Citrus Sinensis ID: 013549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MRTVFKLSRLATTVSGINRLPGPTSHEPCLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccccccccccHHHHHcccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEHHHHHHHHHccccccccccccEcccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHccccccccEEEEEEEcccc
Coil and Loop (DISEMBL)
MRTVFKLSRLATTvsginrlpgptshepcllsastlppprrlvhdangngnringlnsnPVVLQMINYALSHArsqksdesySQGMLVLEQClstqpsdgqlaESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQlgqddtssvVADKCLQlcekhkpenyktygavnsRANAVKGLVELAHGNLESAESFFKGLqeeegctgsaalSYGEYLHATRNFLLAKKFYQKVIEVLAEqkdfsdmntlgsCNMALEEVALAATFALGQLEahmgnfgdAEEILTRTLTKTeelfgshhpkvGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEflkapplesegvetkvdrtDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEalnfsepsnkplvidartsrtm
Flexible Loop (DISEMBL)
mrtvfklsrlattvsginrlpgptshEPCLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEkhkpenyktygavNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEelfgshhpkvGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKapplesegvetkvdrTDIVALARGgyaealsvqqnrkdegERMKRWAEAAWRNRRVSLaealnfsepsnkplvidartsrtm
Low Complexity Region (SEG)
MRTVFKLSRLATTVSGINRLPGPTSHEPCLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM
Disordered region (IsUnstruct)
****************************************************INGLNSNPVVLQMINYAL****************LVLEQCL*******QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL***GVETKVDRTDIVALARGGYAEAL***************WAEAAWRNRRV**************************
Disordered Region (DISOPRED)
*******SRLATTVSGINRLPGPTSHEPC******LPPPRRLVHDAN*N******LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP******ETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM
Disordered Region (DISEMBL)
MRTVFKLSRLATTVSGINRLPGPTSHEPCLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVLQMINYALSH***********QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALS*************RWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM
Disordered Region (DISPRO)
*RTVFKLSRLATTVSGINRLPGPTSHEPCLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTVFKLSRLATTVSGINRLPGPTSHEPCLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.482	0.160	0.260	0.0006

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 102/253 (40%), Gaps = 40/253 (15%)

Query: 111  LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVAD 170
            L A++TL ++   Y +A       E+F+   + +R  A      LY         +++  
Sbjct: 1025 LEALATLYHKQNKYEQA-------EHFRKKSVIIRQQATRRKGSLY-------GFALLRR 1070

Query: 171  KCLQLCE----KHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK-GLQEEEGCT 225
            + LQL E    K KPEN +T   +        G++     NLE+AE F K  L+  E   
Sbjct: 1071 RALQLEELTLGKDKPENARTLNEL--------GVLYFLQNNLETAEQFLKRSLEMRERVL 1122

Query: 226  GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 285
            G       + L+        KK Y+K  E+     D           +A +  +LA T  
Sbjct: 1123 GPDHPDCAQSLNNLAALCNEKKQYEKAEELYERALDIRRR------ALAPDHPSLAYTVK 1176

Query: 286  -LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 344
             L  L    G    A  +    +   ++ FG  HP V   L  LA++  +  M++HS AL
Sbjct: 1177 HLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVL--HSQMKKHSEAL 1234

Query: 345  LIQEGLYRRALEF 357
                 LY RAL+ 
Sbjct: 1235 ----PLYERALKI 1243

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
224063175	434	predicted protein [Populus trichocarpa]	0.963	0.979	0.616	1e-142
255581496	421	conserved hypothetical protein [Ricinus	0.900	0.942	0.638	1e-138
225440428	434	PREDICTED: uncharacterized protein LOC10	0.877	0.891	0.639	1e-137
359481754	437	PREDICTED: uncharacterized protein LOC10	0.877	0.885	0.634	1e-135
297740338	381	unnamed protein product [Vitis vinifera]	0.854	0.989	0.640	1e-133
118481187	380	unknown [Populus trichocarpa]	0.854	0.992	0.639	1e-133
15241687	420	kinesin light chain-like protein [Arabid	0.879	0.923	0.578	1e-127
21537022	420	unknown [Arabidopsis thaliana]	0.879	0.923	0.568	1e-124
297810309	420	hypothetical protein ARALYDRAFT_486989 [	0.879	0.923	0.563	1e-123
449440321	438	PREDICTED: uncharacterized protein LOC10	0.897	0.904	0.543	1e-117

>gi|224063175|ref|XP_002301027.1| predicted protein [Populus trichocarpa] gi|222842753|gb|EEE80300.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/441 (61%), Positives = 331/441 (75%), Gaps = 16/441 (3%)

Query: 5   FKLSRLAT-TVSGINRLPGPTSHEPCLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVL 63
            KLSR+AT TV+   RL G TS +   LS+S+   P RL+HD       I  LN+NPV L
Sbjct: 6   LKLSRVATATVARTARL-GLTSIK---LSSSS---PYRLIHDG-----IIKSLNANPVAL 53

Query: 64  QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ--LAESWRGISLLAMSTLLYES 121
           QMI+YALS A+SQKSDES  Q MLVLEQCLS+Q S+ Q  +  + +G+ LLAMS+LL   
Sbjct: 54  QMIDYALSLAKSQKSDESQGQAMLVLEQCLSSQSSENQDVVTHNSKGMVLLAMSSLLSAR 113

Query: 122 GNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181
           G+Y +A+EKLQ +++  NS L VRVAAMEAL GL L++G DDTSSV+ADKCL+L  K + 
Sbjct: 114 GSYNDAMEKLQNIQDLINSHLDVRVAAMEALVGLNLEMGNDDTSSVLADKCLELLGKVEL 173

Query: 182 ENYKTYGAVNS-RANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATR 240
           +N      V S RA A+KGL EL  GNLESAE FF+G  + +GC G+AALSYGE+LHATR
Sbjct: 174 KNSDEGSEVASARAKAIKGLAELVQGNLESAEPFFQGFLDNKGCIGNAALSYGEFLHATR 233

Query: 241 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 300
           NF LAK FYQKVI+ +A +KDF+D+  L +CNMA EEV LAAT ALGQLE HMGNFG+AE
Sbjct: 234 NFSLAKDFYQKVIQEVANKKDFTDVRALAACNMASEEVLLAATCALGQLEVHMGNFGNAE 293

Query: 301 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360
           E LT  L + E+LFGS HPKVGVVLTCLALMF++K+ QEHSS+LLIQEGLYRRA+E LKA
Sbjct: 294 ETLTSALNRAEQLFGSRHPKVGVVLTCLALMFQHKSKQEHSSSLLIQEGLYRRAIELLKA 353

Query: 361 PPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEA 420
           PPL+ E   T     DI+ALARGGYAE L +Q+NRK EGE+MKRWAEAAWRNR +SL+EA
Sbjct: 354 PPLDLEVNRTMRSGMDIIALARGGYAETLCIQENRKGEGEKMKRWAEAAWRNRSLSLSEA 413

Query: 421 LNFSEPSNKPLVIDARTSRTM 441
           L  S+ SN+  V+DAR  R +
Sbjct: 414 LKISDSSNRMPVVDARICRAL 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581496|ref|XP_002531554.1| conserved hypothetical protein [Ricinus communis] gi|223528815|gb|EEF30820.1| conserved hypothetical protein [Ricinus communis]

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/407 (63%), Positives = 305/407 (74%), Gaps = 10/407 (2%)

Query: 39  PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
           P RL+H+       ING  ++PV LQMI+YALS  +SQKSDESY Q MLVLEQCLS+Q S
Sbjct: 21  PLRLIHEG------INGPYASPVALQMIDYALSLPKSQKSDESYGQAMLVLEQCLSSQSS 74

Query: 99  DGQ--LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156
           +GQ  + ++ +G+ LLAMS LL++  N+ EA+EKLQ + +   S LGVRVAA+EAL GL 
Sbjct: 75  EGQDIVTQNSKGMVLLAMSNLLFQRENHDEAMEKLQGIRDLAPSSLGVRVAAVEALVGLN 134

Query: 157 LQLGQDDTSSVVADKCLQ-LCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF 215
           L+LG DD SSV+ADKCL+ L  K + +      A N+RA A KGLVEL  GNL SAES F
Sbjct: 135 LELGNDDASSVLADKCLEELLGKDEHDTTGGVEAANARAKAFKGLVELVRGNLGSAESLF 194

Query: 216 KGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL 275
           +GLQE EGC G+AALSYGE+LHAT+NF +AK  YQ V+  +AE+KDFSDM+ L +CNMA 
Sbjct: 195 QGLQESEGCVGTAALSYGEFLHATKNFSMAKDLYQNVVAEVAEKKDFSDMHALAACNMAS 254

Query: 276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 335
           EEV LAA  ALGQLEAHMG F DAEE LT+ L K E+LFGS HPKVGVVLTCLALMFR K
Sbjct: 255 EEVLLAAICALGQLEAHMGRFNDAEETLTKALNKAEQLFGSRHPKVGVVLTCLALMFRQK 314

Query: 336 AMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYAEALSVQQN 394
           A+QE SS+LLIQEGLYRRA++ LKAP L+SE  V     R D+VALARGGYAE L VQQN
Sbjct: 315 AVQEQSSSLLIQEGLYRRAIDLLKAPSLDSEDIVMMGSPRRDVVALARGGYAETLCVQQN 374

Query: 395 RKDEGERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 441
           RK EGE+MKRWA AAWRN   SL EAL  SE SNK  VIDAR  R M
Sbjct: 375 RKGEGEKMKRWAAAAWRNNSFSLTEALKISESSNKLPVIDARIGRVM 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440428|ref|XP_002269770.1| PREDICTED: uncharacterized protein LOC100251163 isoform 1 [Vitis vinifera]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/391 (63%), Positives = 303/391 (77%), Gaps = 4/391 (1%)

Query: 55  GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS--DGQLAESWRGISLL 112
           G N+ PV LQMI+YALSHARS KSDESY+QG+LVLEQCLST  +  D   +++ RG+ LL
Sbjct: 44  GSNATPVALQMIDYALSHARSLKSDESYAQGLLVLEQCLSTHSNEVDDTTSQNSRGMVLL 103

Query: 113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKC 172
           AMSTLL E G + +AI+KLQ ++    S LGVRVA+ME L GL LQL +DDTS V+ADKC
Sbjct: 104 AMSTLLSERGAFDDAIDKLQIIQGLAESHLGVRVASMEGLVGLNLQLERDDTSRVLADKC 163

Query: 173 LQLCEKHKPENYKTYGA--VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAAL 230
           +QL      +    +G+  +N RA A+KGLVEL HGNLESAESFF+GLQ+E+GCTG+AAL
Sbjct: 164 VQLLGNDTADIGNGFGSKVLNVRAKALKGLVELVHGNLESAESFFQGLQDEKGCTGNAAL 223

Query: 231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 290
           SYGE+LH+   F LAK+ YQK IE ++  K+F+D   L +C+M+  EV LAAT  LGQLE
Sbjct: 224 SYGEFLHSMGKFSLAKELYQKAIEGISANKEFADPYALAACSMSGREVQLAATCDLGQLE 283

Query: 291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 350
             +GNF +AEEILTR LTKTEE FGSHHP VG+VLTC+ALMFR+KA+ EHSS+LLIQEGL
Sbjct: 284 GQLGNFSEAEEILTRVLTKTEEHFGSHHPNVGIVLTCIALMFRHKAIMEHSSSLLIQEGL 343

Query: 351 YRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAW 410
           YRRAL+ LKAP LE+EG +  V + DIVALARG YAE L VQQNRKDEGERMK WA+ AW
Sbjct: 344 YRRALDLLKAPSLETEGSKADVAQRDIVALARGAYAEVLCVQQNRKDEGERMKSWAQTAW 403

Query: 411 RNRRVSLAEALNFSEPSNKPLVIDARTSRTM 441
           RNRR+SLAEAL  SE  +K  +IDAR SR +
Sbjct: 404 RNRRLSLAEALEMSELCSKVPIIDARISRAL 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481754|ref|XP_003632670.1| PREDICTED: uncharacterized protein LOC100251163 isoform 2 [Vitis vinifera]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/394 (63%), Positives = 303/394 (76%), Gaps = 7/394 (1%)

Query: 55  GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS--DGQLAESWRGISLL 112
           G N+ PV LQMI+YALSHARS KSDESY+QG+LVLEQCLST  +  D   +++ RG+ LL
Sbjct: 44  GSNATPVALQMIDYALSHARSLKSDESYAQGLLVLEQCLSTHSNEVDDTTSQNSRGMVLL 103

Query: 113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKC 172
           AMSTLL E G + +AI+KLQ ++    S LGVRVA+ME L GL LQL +DDTS V+ADKC
Sbjct: 104 AMSTLLSERGAFDDAIDKLQIIQGLAESHLGVRVASMEGLVGLNLQLERDDTSRVLADKC 163

Query: 173 LQLCEKHKPENYKTYGA--VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAAL 230
           +QL      +    +G+  +N RA A+KGLVEL HGNLESAESFF+GLQ+E+GCTG+AAL
Sbjct: 164 VQLLGNDTADIGNGFGSKVLNVRAKALKGLVELVHGNLESAESFFQGLQDEKGCTGNAAL 223

Query: 231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 290
           SYGE+LH+   F LAK+ YQK IE ++  K+F+D   L +C+M+  EV LAAT  LGQLE
Sbjct: 224 SYGEFLHSMGKFSLAKELYQKAIEGISANKEFADPYALAACSMSGREVQLAATCDLGQLE 283

Query: 291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 350
             +GNF +AEEILTR LTKTEE FGSHHP VG+VLTC+ALMFR+KA+ EHSS+LLIQEGL
Sbjct: 284 GQLGNFSEAEEILTRVLTKTEEHFGSHHPNVGIVLTCIALMFRHKAIMEHSSSLLIQEGL 343

Query: 351 YRRALEFLKAPPLESEGVE---TKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAE 407
           YRRAL+ LKAP LE+EG+      V + DIVALARG YAE L VQQNRKDEGERMK WA+
Sbjct: 344 YRRALDLLKAPSLETEGMGHDLADVAQRDIVALARGAYAEVLCVQQNRKDEGERMKSWAQ 403

Query: 408 AAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 441
            AWRNRR+SLAEAL  SE  +K  +IDAR SR +
Sbjct: 404 TAWRNRRLSLAEALEMSELCSKVPIIDARISRAL 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740338|emb|CBI30520.3| unnamed protein product [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/381 (64%), Positives = 296/381 (77%), Gaps = 4/381 (1%)

Query: 65  MINYALSHARSQKSDESYSQGMLVLEQCLSTQPS--DGQLAESWRGISLLAMSTLLYESG 122
           MI+YALSHARS KSDESY+QG+LVLEQCLST  +  D   +++ RG+ LLAMSTLL E G
Sbjct: 1   MIDYALSHARSLKSDESYAQGLLVLEQCLSTHSNEVDDTTSQNSRGMVLLAMSTLLSERG 60

Query: 123 NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182
            + +AI+KLQ ++    S LGVRVA+ME L GL LQL +DDTS V+ADKC+QL      +
Sbjct: 61  AFDDAIDKLQIIQGLAESHLGVRVASMEGLVGLNLQLERDDTSRVLADKCVQLLGNDTAD 120

Query: 183 NYKTYGA--VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATR 240
               +G+  +N RA A+KGLVEL HGNLESAESFF+GLQ+E+GCTG+AALSYGE+LH+  
Sbjct: 121 IGNGFGSKVLNVRAKALKGLVELVHGNLESAESFFQGLQDEKGCTGNAALSYGEFLHSMG 180

Query: 241 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 300
            F LAK+ YQK IE ++  K+F+D   L +C+M+  EV LAAT  LGQLE  +GNF +AE
Sbjct: 181 KFSLAKELYQKAIEGISANKEFADPYALAACSMSGREVQLAATCDLGQLEGQLGNFSEAE 240

Query: 301 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360
           EILTR LTKTEE FGSHHP VG+VLTC+ALMFR+KA+ EHSS+LLIQEGLYRRAL+ LKA
Sbjct: 241 EILTRVLTKTEEHFGSHHPNVGIVLTCIALMFRHKAIMEHSSSLLIQEGLYRRALDLLKA 300

Query: 361 PPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEA 420
           P LE+EG +  V + DIVALARG YAE L VQQNRKDEGERMK WA+ AWRNRR+SLAEA
Sbjct: 301 PSLETEGSKADVAQRDIVALARGAYAEVLCVQQNRKDEGERMKSWAQTAWRNRRLSLAEA 360

Query: 421 LNFSEPSNKPLVIDARTSRTM 441
           L  SE  +K  +IDAR SR +
Sbjct: 361 LEMSELCSKVPIIDARISRAL 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481187|gb|ABK92545.1| unknown [Populus trichocarpa]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/380 (63%), Positives = 295/380 (77%), Gaps = 3/380 (0%)

Query: 65  MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ--LAESWRGISLLAMSTLLYESG 122
           MI+YALS A+SQKSDES  Q MLVLEQCLS+Q S+ Q  +  + +G+ LLAMS+LL   G
Sbjct: 1   MIDYALSLAKSQKSDESQGQAMLVLEQCLSSQSSENQDVVTHNSKGMVLLAMSSLLSARG 60

Query: 123 NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182
           +Y +A+EKLQ +++  NS L VRVAAMEAL GL L++G DDTSSV+ADKCL+L  K + +
Sbjct: 61  SYNDAMEKLQNIQDLINSHLDVRVAAMEALVGLNLEMGNDDTSSVLADKCLELLGKVELK 120

Query: 183 NYKTYGAVNS-RANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRN 241
           N      V S RA A+KGL EL  GNLESAE FF+G  + +GC G+AALSYGE+LHATRN
Sbjct: 121 NSDEGSEVASARAKAIKGLAELVQGNLESAEPFFQGFLDNKGCIGNAALSYGEFLHATRN 180

Query: 242 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 301
           F LAK FYQKVI+ +A +KDF+D+  L +CNMA EEV LAAT ALGQLE HMGNFG+AEE
Sbjct: 181 FSLAKDFYQKVIQEVANKKDFTDVRALAACNMASEEVLLAATCALGQLEVHMGNFGNAEE 240

Query: 302 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 361
            LT  L + E+LFGS HPKVGVVLTCLALMF++K+ QEHSS+LLIQEGLYRRA+E LKAP
Sbjct: 241 TLTSALNRAEQLFGSRHPKVGVVLTCLALMFQHKSKQEHSSSLLIQEGLYRRAIELLKAP 300

Query: 362 PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEAL 421
           PL+ E   T     DI+ALARGGYAE L +Q+NRK EGE+MKRWAEAAWRNR +SL+EAL
Sbjct: 301 PLDLEVNRTMRSGMDIIALARGGYAETLCIQENRKGEGEKMKRWAEAAWRNRSLSLSEAL 360

Query: 422 NFSEPSNKPLVIDARTSRTM 441
             S+ SN+  V+DAR  R +
Sbjct: 361 KISDSSNRMPVVDARICRAL 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241687|ref|NP_195833.1| kinesin light chain-like protein [Arabidopsis thaliana] gi|7340687|emb|CAB82986.1| putative protein [Arabidopsis thaliana] gi|98961125|gb|ABF59046.1| At5g02130 [Arabidopsis thaliana] gi|332003051|gb|AED90434.1| kinesin light chain-like protein [Arabidopsis thaliana]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/403 (57%), Positives = 299/403 (74%), Gaps = 15/403 (3%)

Query: 39  PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
           P RL+H        I+  N+N V +QM+NYALSHARSQKSDESY+QGMLVLEQCL  QP+
Sbjct: 33  PLRLIH------GEISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCLGNQPN 86

Query: 99  DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
           D Q++   +   LLAMS LLYESGN  EAIE+L++V    +S L +RV A+EAL GL +Q
Sbjct: 87  DDQVSHDSKATVLLAMSDLLYESGNSSEAIERLKQVMTLTHSSLAIRVVAVEALVGLLIQ 146

Query: 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218
            GQDD S  VAD+ L+L ++   EN +    V +   A+KGL EL  GN+ESAES F+GL
Sbjct: 147 SGQDDASLDVADEFLKLVKESGHENLQ---GVVATVKAIKGLAELVKGNIESAESLFRGL 203

Query: 219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278
           +  E C G+ ALSYGEYLHAT NF LAK+ YQK I+ + E K+     ++ SCNM L+ V
Sbjct: 204 ENHESCKGNIALSYGEYLHATGNFELAKEMYQKAIQGVTETKE-----SMCSCNMNLKAV 258

Query: 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338
           +LAATFALGQLE+H+GNFG AE+ LT  LTKTEE +G +HPKVGV+LT +ALM+ NKA Q
Sbjct: 259 SLAATFALGQLESHIGNFGVAEKTLTDALTKTEEHYGDNHPKVGVILTAVALMYGNKAKQ 318

Query: 339 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 398
           E SS++LIQEGLYR+ALE +KAPPL+S+G+   ++  +++ALAR GYAE L +Q+NRK E
Sbjct: 319 ERSSSILIQEGLYRKALELMKAPPLDSKGI-INMENQEVIALARAGYAELLLIQENRKSE 377

Query: 399 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 441
           GE+MK WAE+AWRN+R+SL+EAL  SEP  K  +IDART+R +
Sbjct: 378 GEKMKSWAESAWRNKRISLSEALTLSEPLGKVAIIDARTTRVL 420

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537022|gb|AAM61363.1| unknown [Arabidopsis thaliana]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/403 (56%), Positives = 295/403 (73%), Gaps = 15/403 (3%)

Query: 39  PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
           P RL+H        I+  N+N V +QM+NYALSHARSQKSDESY+QGMLVLEQC   QP+
Sbjct: 33  PLRLIH------GEISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCFGNQPN 86

Query: 99  DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
           D  ++   +   LLAMS LLYESGN  EA E+L++V    +S L +RV A+EAL GL +Q
Sbjct: 87  DDDVSHDSKATVLLAMSDLLYESGNSSEASERLKQVMTLTHSSLAIRVVAVEALVGLLMQ 146

Query: 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218
            GQDD S  VAD+ L+L ++   EN +    V + A A+KGL EL  GN+ESAES F+GL
Sbjct: 147 SGQDDASLDVADEFLELVKESGHENLQD---VIAAAKAIKGLAELVKGNIESAESLFRGL 203

Query: 219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278
           +  + C G+ ALSYGEYLHAT NF LAK+ YQK I+ + E K+     ++ SCNM L+ V
Sbjct: 204 ENHDSCKGNIALSYGEYLHATGNFELAKEMYQKAIQGVRETKE-----SMCSCNMNLKAV 258

Query: 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338
           +LAATFALGQLE+H+GNFG AE+ LT  LT TEE  G +HPKVGV+LT +ALM+ NKA Q
Sbjct: 259 SLAATFALGQLESHIGNFGVAEKTLTDALTNTEEHHGDNHPKVGVILTAVALMYGNKAKQ 318

Query: 339 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 398
           E SS++LIQEGLYR+ALE +KAPPL+S+G+   ++  +++ALAR GYAE L +Q+NRK E
Sbjct: 319 ERSSSILIQEGLYRKALELMKAPPLDSKGI-INMENQEVIALARAGYAELLLIQENRKSE 377

Query: 399 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 441
           GE+MK WAE+AWRN+R+SL+EAL  SEP  K  +IDART+R +
Sbjct: 378 GEKMKSWAESAWRNKRISLSEALTLSEPLGKVAIIDARTTRVL 420

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810309|ref|XP_002873038.1| hypothetical protein ARALYDRAFT_486989 [Arabidopsis lyrata subsp. lyrata] gi|297318875|gb|EFH49297.1| hypothetical protein ARALYDRAFT_486989 [Arabidopsis lyrata subsp. lyrata]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/403 (56%), Positives = 294/403 (72%), Gaps = 15/403 (3%)

Query: 39  PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
           P RL+H        I+  N+N V +QM+NYALSHARSQKSDESY+QGMLVLEQCL  QP+
Sbjct: 33  PLRLIH------GEISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCLENQPN 86

Query: 99  DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
           D Q++   +   LLAMS LLYESGN  EAIE+L++V    +S L +RV A+EAL GL +Q
Sbjct: 87  DDQVSHDSKATVLLAMSDLLYESGNSSEAIERLKQVMTLTHSSLAIRVVAVEALVGLLIQ 146

Query: 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218
            GQDD S  VAD+ L+L ++   EN +    V + A A+KGL EL  GN+ESAES F+GL
Sbjct: 147 SGQDDASLDVADEFLELVKESGHENLQD---VVATAKAIKGLAELVKGNIESAESLFRGL 203

Query: 219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278
           +  E C G+ ALSYGE+LHAT NF LAK+ Y   I+ + E K      ++ SCNM L+ V
Sbjct: 204 ENHESCKGNIALSYGEFLHATGNFELAKEMYHMAIQGVTETKV-----SMCSCNMNLKAV 258

Query: 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338
           +LAATFALGQLE+H+GNFG AE+ LT  LT  EE +G++HPKVGV+LT +ALM+ NKA Q
Sbjct: 259 SLAATFALGQLESHIGNFGVAEKTLTDALTNAEEHYGNNHPKVGVILTAVALMYGNKAKQ 318

Query: 339 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 398
           E SS++LIQEGL+R+ALE +KAPPL+SEG+   ++   ++ALAR GYAE L +Q+NRK E
Sbjct: 319 ERSSSILIQEGLFRKALELMKAPPLDSEGI-INMENQGVMALARAGYAELLLIQENRKSE 377

Query: 399 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 441
           GE+MK WA +AWRN+R+SL+EA+  SEP  K  +IDART+R +
Sbjct: 378 GEKMKSWAASAWRNKRISLSEAMTLSEPLGKVAIIDARTTRVL 420

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440321|ref|XP_004137933.1| PREDICTED: uncharacterized protein LOC101204931 [Cucumis sativus] gi|449483653|ref|XP_004156650.1| PREDICTED: uncharacterized protein LOC101224842 [Cucumis sativus]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/403 (54%), Positives = 289/403 (71%), Gaps = 7/403 (1%)

Query: 39  PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
           P RL+H        ++  N++PV  QMINY LSHARSQ+S ESY+QG+LVLEQCLS Q S
Sbjct: 43  PWRLLHVG------MDRPNASPVTRQMINYGLSHARSQRSGESYAQGLLVLEQCLSAQSS 96

Query: 99  DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
           +G+ A++ RG  LLAMSTLL E G+  +AI+KLQ++E+  +  L +RVAA+EALAGL+L+
Sbjct: 97  EGEDADNSRGAVLLAMSTLLAERGDIHDAIDKLQRIEDLAHCSLDIRVAALEALAGLHLE 156

Query: 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218
           L  +D+SS +ADKCLQL E  +  +      + +R  AVKGLVEL   NL +AES F+G 
Sbjct: 157 LDLNDSSSAIADKCLQLFETSELADDGDSEVLRARVKAVKGLVELVQNNLGAAESLFEGF 216

Query: 219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278
           Q  E C GSAA +YGE+L A++NF  AK+ Y++VIEV +E KD S+   L   NM+  +V
Sbjct: 217 QTIERCAGSAAFTYGEFLVASQNFSSAKEVYKRVIEVGSEVKDSSEQCALAGGNMSPMDV 276

Query: 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338
            +AAT ALGQLE ++GNF +AE++LT  LTKTEE FGSHHPKVGV+LTC+ALMFR+KAM+
Sbjct: 277 LVAATCALGQLEGNLGNFSEAEDLLTNALTKTEEYFGSHHPKVGVILTCIALMFRHKAMK 336

Query: 339 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 398
           EHSS++LIQEGLYRRA++ +K  P E  G ++KV R DI A+A   YAE L VQ+NRK E
Sbjct: 337 EHSSSILIQEGLYRRAIDLMKVSP-EDRGGQSKVHRCDIAAIAGEAYAEILDVQKNRKPE 395

Query: 399 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 441
            + ++ W   AWRN R+SL E L+  +P +K  VID R  R +
Sbjct: 396 AQIVRSWVRGAWRNGRISLEEVLDIGQPPSKVPVIDTRICRLI 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
TAIR|locus:2185208	420	NDP1 "AT5G02130" [Arabidopsis	0.879	0.923	0.580	4.4e-116

TAIR|locus:2185208 NDP1 "AT5G02130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
 Identities = 234/403 (58%), Positives = 300/403 (74%)

Query:    39 PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
             P RL+H        I+  N+N V +QM+NYALSHARSQKSDESY+QGMLVLEQCL  QP+
Sbjct:    33 PLRLIH------GEISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCLGNQPN 86

Query:    99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
             D Q++   +   LLAMS LLYESGN  EAIE+L++V    +S L +RV A+EAL GL +Q
Sbjct:    87 DDQVSHDSKATVLLAMSDLLYESGNSSEAIERLKQVMTLTHSSLAIRVVAVEALVGLLIQ 146

Query:   159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218
              GQDD S  VAD+ L+L ++   EN +  G V +   A+KGL EL  GN+ESAES F+GL
Sbjct:   147 SGQDDASLDVADEFLKLVKESGHENLQ--GVV-ATVKAIKGLAELVKGNIESAESLFRGL 203

Query:   219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278
             +  E C G+ ALSYGEYLHAT NF LAK+ YQK I+ + E K+     ++ SCNM L+ V
Sbjct:   204 ENHESCKGNIALSYGEYLHATGNFELAKEMYQKAIQGVTETKE-----SMCSCNMNLKAV 258

Query:   279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338
             +LAATFALGQLE+H+GNFG AE+ LT  LTKTEE +G +HPKVGV+LT +ALM+ NKA Q
Sbjct:   259 SLAATFALGQLESHIGNFGVAEKTLTDALTKTEEHYGDNHPKVGVILTAVALMYGNKAKQ 318

Query:   339 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 398
             E SS++LIQEGLYR+ALE +KAPPL+S+G+   ++  +++ALAR GYAE L +Q+NRK E
Sbjct:   319 ERSSSILIQEGLYRKALELMKAPPLDSKGI-INMENQEVIALARAGYAELLLIQENRKSE 377

Query:   399 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 441
             GE+MK WAE+AWRN+R+SL+EAL  SEP  K  +IDART+R +
Sbjct:   378 GEKMKSWAESAWRNKRISLSEALTLSEPLGKVAIIDARTTRVL 420


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      441       441   0.00089  118 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  251 KB (2135 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.83u 0.25s 39.08t   Elapsed:  00:00:02
  Total cpu time:  38.83u 0.25s 39.08t   Elapsed:  00:00:02
  Start:  Sat May 11 03:02:58 2013   End:  Sat May 11 03:03:00 2013

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_II2559 SubName- Full=Putative uncharacterized protein; (434 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	441
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	5e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 13/111 (11%)

Query: 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVAD 170
           LL  ++L+ ESG+  EA+E L++ E     I+  R+A ME  A L L+LG+ +     A+
Sbjct: 7   LLYKNSLIEESGDLEEALEHLEEKE---KQIVD-RLAVMEMRADLLLKLGRKEE----AE 58

Query: 171 KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE 221
              +      PENY  Y  +        GL E++ G++E+  + +  L E+
Sbjct: 59  ATYRALLDRNPENYDYYEGL----QKALGL-EISSGDIEALLALYDELAEK 104

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 339
            AA   L  +   +G++ +A E+L + L +     G  HP+    L  LA ++   A+ +
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKAL-ELARELGEDHPETARALNNLARLYL--ALGD 61

Query: 340 HSSALLIQEGLYRRALEFLKA 360
           +  AL        +AL   +A
Sbjct: 62  YDEALE----YLEKALALREA 78

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.97
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.85
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.82
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.8
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.8
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.8
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.77
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.76
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.75
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.69
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.67
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.64
PRK12370	553	invasion protein regulator; Provisional	99.62
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.59
PRK04841	903	transcriptional regulator MalT; Provisional	99.59
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.58
PRK04841	903	transcriptional regulator MalT; Provisional	99.55
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.54
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.52
PRK11189	296	lipoprotein NlpI; Provisional	99.5
KOG1126	638	consensus DNA-binding cell division cycle control	99.5
PRK12370	553	invasion protein regulator; Provisional	99.49
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.46
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.46
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.45
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.42
PRK11189	296	lipoprotein NlpI; Provisional	99.41
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.4
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.4
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.33
PLN03218	1060	maturation of RBCL 1; Provisional	99.32
PLN03218	1060	maturation of RBCL 1; Provisional	99.29
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.27
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.26
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.26
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.23
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.22
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.22
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.22
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.22
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.16
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.15
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.15
PRK14574	822	hmsH outer membrane protein; Provisional	99.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.13
KOG1129	478	consensus TPR repeat-containing protein [General f	99.13
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.13
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.11
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.09
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.09
PLN03077	857	Protein ECB2; Provisional	99.09
KOG1125	579	consensus TPR repeat-containing protein [General f	99.08
PLN03077	857	Protein ECB2; Provisional	99.07
PRK14574	822	hmsH outer membrane protein; Provisional	99.03
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.03
KOG2003	840	consensus TPR repeat-containing protein [General f	99.02
KOG1129	478	consensus TPR repeat-containing protein [General f	99.01
KOG2003	840	consensus TPR repeat-containing protein [General f	98.99
PRK15359	144	type III secretion system chaperone protein SscB;	98.99
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.98
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.97
PRK15359	144	type III secretion system chaperone protein SscB;	98.94
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.89
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.88
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.88
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.87
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.86
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.86
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.77
KOG2076	895	consensus RNA polymerase III transcription factor	98.76
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.76
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.74
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.73
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.7
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.68
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.68
PF12688	120	TPR_5: Tetratrico peptide repeat	98.68
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.64
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.61
PLN02789	320	farnesyltranstransferase	98.58
KOG1125	579	consensus TPR repeat-containing protein [General f	98.58
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.56
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.53
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.53
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.52
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.51
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.5
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.48
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.48
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.48
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.47
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.43
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.42
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.42
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.38
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.37
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.36
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.35
PF12688	120	TPR_5: Tetratrico peptide repeat	98.34
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.33
KOG2076	895	consensus RNA polymerase III transcription factor	98.32
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.31
PLN02789	320	farnesyltranstransferase	98.29
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.27
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.26
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.24
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.24
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.22
KOG0553	304	consensus TPR repeat-containing protein [General f	98.2
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.17
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.16
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.12
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.12
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.11
KOG0553	304	consensus TPR repeat-containing protein [General f	98.11
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.09
PRK10803	263	tol-pal system protein YbgF; Provisional	98.08
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.07
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.0
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.0
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.99
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.95
PRK10803	263	tol-pal system protein YbgF; Provisional	97.92
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.91
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.89
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.87
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.87
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.86
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.83
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.8
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.8
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.79
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.77
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.77
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.75
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.75
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.73
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.73
PRK15331	165	chaperone protein SicA; Provisional	97.72
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.7
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.66
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.65
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.63
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.52
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.49
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.49
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.44
KOG1585	308	consensus Protein required for fusion of vesicles	97.43
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.41
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.41
PF13371	73	TPR_9: Tetratricopeptide repeat	97.4
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.4
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.31
PF13371	73	TPR_9: Tetratricopeptide repeat	97.3
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.28
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.27
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.25
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.23
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.19
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.11
KOG4555	175	consensus TPR repeat-containing protein [Function	96.98
KOG4234	271	consensus TPR repeat-containing protein [General f	96.98
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.95
KOG1585	308	consensus Protein required for fusion of vesicles	96.95
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.95
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.94
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.93
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.86
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.84
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.82
KOG4555	175	consensus TPR repeat-containing protein [Function	96.79
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.74
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.71
KOG1586	288	consensus Protein required for fusion of vesicles	96.71
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.68
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.62
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.6
PRK15331	165	chaperone protein SicA; Provisional	96.58
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.54
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.49
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.48
KOG1586	288	consensus Protein required for fusion of vesicles	96.4
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.39
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.38
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.29
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.25
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.24
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.24
PRK11906	458	transcriptional regulator; Provisional	96.16
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.08
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.07
KOG4234	271	consensus TPR repeat-containing protein [General f	96.05
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.0
KOG4648	536	consensus Uncharacterized conserved protein, conta	95.99
PF13428	44	TPR_14: Tetratricopeptide repeat	95.96
PF13512	142	TPR_18: Tetratricopeptide repeat	95.91
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.84
PF13512	142	TPR_18: Tetratricopeptide repeat	95.8
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.8
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.79
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.77
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.74
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.71
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.68
PRK11906	458	transcriptional regulator; Provisional	95.61
PF13431	34	TPR_17: Tetratricopeptide repeat	95.48
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.45
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.39
PF13431	34	TPR_17: Tetratricopeptide repeat	95.38
PF13428	44	TPR_14: Tetratricopeptide repeat	95.28
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.28
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.21
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.14
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.07
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.88
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.7
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.64
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.42
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.07
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.06
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.04
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.99
PF09311	181	Rab5-bind: Rabaptin-like protein; InterPro: IPR015	93.94
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.92
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.82
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	93.65
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.48
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.41
KOG0508	615	consensus Ankyrin repeat protein [General function	93.29
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.26
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.15
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.1
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.02
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.9
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	92.84
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.82
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.72
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	92.52
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.24
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	92.22
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.13
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	91.6
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.21
KOG2471	696	consensus TPR repeat-containing protein [General f	90.74
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	90.59
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.76
KOG2796	366	consensus Uncharacterized conserved protein [Funct	89.39
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.92
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	88.89
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	88.43
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.19
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	88.18
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.87
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.68
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	87.5
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.45
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	87.36
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	87.28
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	86.95
KOG2471	696	consensus TPR repeat-containing protein [General f	86.51
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	86.12
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	85.7
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	85.42
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	84.03
PF09311	181	Rab5-bind: Rabaptin-like protein; InterPro: IPR015	84.0
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	83.03
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	82.87
COG3118	304	Thioredoxin domain-containing protein [Posttransla	82.39
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	82.24
KOG0687	393	consensus 26S proteasome regulatory complex, subun	82.19
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	81.82
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.73
KOG4507	886	consensus Uncharacterized conserved protein, conta	81.36
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	81.15
KOG4507	886	consensus Uncharacterized conserved protein, conta	80.59
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	80.44
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	80.28
KOG2041	1189	consensus WD40 repeat protein [General function pr	80.27

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=9.9e-32  Score=282.13  Aligned_cols=278  Identities=21%  Similarity=0.257  Sum_probs=239.2

Q ss_pred             cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      .|..+|.+.-...+++..|.    .+|+|+.|++++++|+.+..+..|.+||.++..++++|.+|..+|+|.+|+.+|++
T Consensus       191 ~~~~~P~~~~~~~~La~~y~----~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~  266 (508)
T KOG1840|consen  191 LGDEDPERLRTLRNLAEMYA----VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE  266 (508)
T ss_pred             cccCCchHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            57888999988889999983    48999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhh----HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHH
Q 013549          134 VENFKNSILGVR----VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE  209 (441)
Q Consensus       134 al~i~~~~lg~~----~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~  209 (441)
                      |++|.+..+|.+    +.+++||+.+|..+|++.+|+.+++++++|.++....                           
T Consensus       267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~---------------------------  319 (508)
T KOG1840|consen  267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA---------------------------  319 (508)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc---------------------------
Confidence            999999988763    3577788888877788888877777777776652210                           


Q ss_pred             HHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH-HHHHHHH
Q 013549          210 SAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQ  288 (441)
Q Consensus       210 eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~-al~nLg~  288 (441)
                                 .++.......+++.++..+++|++|+.+|++++.|..   .     .+|.     +++.++ ..+|||.
T Consensus       320 -----------~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~-----~~g~-----~~~~~a~~~~nl~~  375 (508)
T KOG1840|consen  320 -----------SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---D-----APGE-----DNVNLAKIYANLAE  375 (508)
T ss_pred             -----------ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---h-----hccc-----cchHHHHHHHHHHH
Confidence                       1122233456778899999999999999999999964   2     4452     332333 5689999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcch
Q 013549          289 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV  368 (441)
Q Consensus       289 ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~  368 (441)
                      +|..+|+|+||+++|++|+.|.++.+|..|+.++..+++||..|.+.+++++|      +.+|.+++.|++..+++||++
T Consensus       376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a------~~l~~~~~~i~~~~g~~~~~~  449 (508)
T KOG1840|consen  376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA------EQLFEEAKDIMKLCGPDHPDV  449 (508)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH------HHHHHHHHHHHHHhCCCCCch
Confidence            99999999999999999999999999999999999999999999999998876      999999999998889999999


Q ss_pred             HhhhccHHHHHHHhccHHHHHHHh
Q 013549          369 ETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       369 ~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      ...+.||+.+|..+|+|+.|..+.
T Consensus       450 ~~~~~nL~~~Y~~~g~~e~a~~~~  473 (508)
T KOG1840|consen  450 TYTYLNLAALYRAQGNYEAAEELE  473 (508)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHH
Confidence            999999999999999998776654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.97  E-value=5.6e-30  Score=268.93  Aligned_cols=245  Identities=20%  Similarity=0.250  Sum_probs=200.9

Q ss_pred             cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      .|-+||.|+..++++|.+| +   ++++|+||+.+|++||+|.+..+|++||.+|.+++|||.+|..+|||+||.+++++
T Consensus       233 ~G~~hl~va~~l~~~a~~y-~---~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~  308 (508)
T KOG1840|consen  233 SGLKHLVVASMLNILALVY-R---SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER  308 (508)
T ss_pred             cCccCHHHHHHHHHHHHHH-H---HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            5789999999999999998 3   67999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhh---hH-HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHH
Q 013549          134 VENFKNSILGV---RV-AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE  209 (441)
Q Consensus       134 al~i~~~~lg~---~~-~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~  209 (441)
                      |+.|.+..+|.   ++ ..+.+++.                                              ++..+++|+
T Consensus       309 Al~I~~~~~~~~~~~v~~~l~~~~~----------------------------------------------~~~~~~~~E  342 (508)
T KOG1840|consen  309 ALEIYEKLLGASHPEVAAQLSELAA----------------------------------------------ILQSMNEYE  342 (508)
T ss_pred             HHHHHHHhhccChHHHHHHHHHHHH----------------------------------------------HHHHhcchh
Confidence            99999875433   12 22333333                                              344555666


Q ss_pred             HHHHHHHhhhh-----c---cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH
Q 013549          210 SAESFFKGLQE-----E---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA  281 (441)
Q Consensus       210 eAe~l~~~aL~-----~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~  281 (441)
                      +|+.+|+++++     .   +.+.+..-.+||.+|+.+|+|+||+++|++||.|.++..+   ....+         .-.
T Consensus       343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~---~~~~~---------~~~  410 (508)
T KOG1840|consen  343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG---KKDYG---------VGK  410 (508)
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc---CcChh---------hhH
Confidence            66666665555     1   1122334468899999999999999999999999755443   11111         124


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc-
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-  360 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~-  360 (441)
                      ++++||..|...++|.+|+++|.++..|. +.+|++||+|-.++-|||.+|..||+||+|      +.+..+++.+++. 
T Consensus       411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a------~~~~~~~~~~~~~~  483 (508)
T KOG1840|consen  411 PLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAA------EELEEKVLNAREQR  483 (508)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHH------HHHHHHHHHHHHHc
Confidence            68999999999999999999999999999 999999999999999999999999999997      9999999999864 


Q ss_pred             CCCCCcc
Q 013549          361 PPLESEG  367 (441)
Q Consensus       361 ~~~~~~~  367 (441)
                      .+..+|.
T Consensus       484 ~~~~~~~  490 (508)
T KOG1840|consen  484 LGTASPT  490 (508)
T ss_pred             CCCCCcc
Confidence            4445554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=1.6e-25  Score=231.89  Aligned_cols=148  Identities=17%  Similarity=0.196  Sum_probs=78.1

Q ss_pred             HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549          204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT  283 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al  283 (441)
                      ..|+.+||+.+|.++|.-.+.++.++.|+|++|..||++++|..+|++||+++   -      .+           .++.
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~---p------~~-----------aaa~  391 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF---P------EF-----------AAAH  391 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---h------hh-----------hhhh
Confidence            44555555555555555444455555555555555555555555555555551   0      11           1234


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCC
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL  363 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~  363 (441)
                      +|||.+|..||++++|..+|+.||.|.        |..+.+|+|+|.+|..+|+.+.|      ...|.||+.|.     
T Consensus       392 nNLa~i~kqqgnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke~g~v~~A------~q~y~rAI~~n-----  452 (966)
T KOG4626|consen  392 NNLASIYKQQGNLDDAIMCYKEALRIK--------PTFADALSNMGNTYKEMGDVSAA------IQCYTRAIQIN-----  452 (966)
T ss_pred             hhHHHHHHhcccHHHHHHHHHHHHhcC--------chHHHHHHhcchHHHHhhhHHHH------HHHHHHHHhcC-----
Confidence            555555555555555555555555542        55555555555555555555444      55555554442     


Q ss_pred             CCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          364 ESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       364 ~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                        |..+..-+||+.+|...|.-.+|+..+
T Consensus       453 --Pt~AeAhsNLasi~kDsGni~~AI~sY  479 (966)
T KOG4626|consen  453 --PTFAEAHSNLASIYKDSGNIPEAIQSY  479 (966)
T ss_pred             --cHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence              334444455555555555555555543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=3.4e-25  Score=229.57  Aligned_cols=307  Identities=15%  Similarity=0.131  Sum_probs=215.2

Q ss_pred             ccccccCCCCCcccccccCCCCccc-cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhH
Q 013549           29 CLLSASTLPPPRRLVHDANGNGNRI-NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWR  107 (441)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~  107 (441)
                      ||.+....+++...|..+      + .-|+.   +-...+++.++    |.+|+..||-.+|.+|+.++        |..
T Consensus       159 al~~~~~~~~a~~~~~~a------lqlnP~l---~ca~s~lgnLl----ka~Grl~ea~~cYlkAi~~q--------p~f  217 (966)
T KOG4626|consen  159 ALVTQGDLELAVQCFFEA------LQLNPDL---YCARSDLGNLL----KAEGRLEEAKACYLKAIETQ--------PCF  217 (966)
T ss_pred             HHHhcCCCcccHHHHHHH------HhcCcch---hhhhcchhHHH----HhhcccchhHHHHHHHHhhC--------Cce
Confidence            555666666666666655      4 23333   33334455555    35677888888888888644        456


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                      |.+..|||.++-.+|+..+|+.+|++|+++.+.-+    .++.||+++|..++.++.|..-|.+++.+.-..-       
T Consensus       218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~----dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-------  286 (966)
T KOG4626|consen  218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL----DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-------  286 (966)
T ss_pred             eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch----HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-------
Confidence            77788888888888888888888888888776643    2677888888888888888888887764432111       


Q ss_pred             hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549          188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT  267 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~  267 (441)
                      ...     ..++.+|..||..|-|+..|+|+|+..+..+.+-.|+|+.+...|+..||+.+|.+||...           
T Consensus       287 ~a~-----gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-----------  350 (966)
T KOG4626|consen  287 VAH-----GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-----------  350 (966)
T ss_pred             hhc-----cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-----------
Confidence            111     1235567778888888888888888666677777788888888888888888888888771           


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 013549          268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ  347 (441)
Q Consensus       268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~A  347 (441)
                             |.  ...+++|||++|..||++++|..+|++||+++        |..+...+|||.+|.+||++++|      
T Consensus       351 -------p~--hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~A------  407 (966)
T KOG4626|consen  351 -------PN--HADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDA------  407 (966)
T ss_pred             -------Cc--cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHH------
Confidence                   01  13567888888888888888888888888765        77788888888888888887776      


Q ss_pred             HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh----hchhhHHHHHHHHHHHHHhcc
Q 013549          348 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ----QNRKDEGERMKRWAEAAWRNR  413 (441)
Q Consensus       348 e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~----~~r~~eae~~~~~a~~~~~~~  413 (441)
                      ...|+.||.|-       |..+..++|++.+|.-+|+-..|+..+    +-+-.-||.-.+.|..+.-.+
T Consensus       408 i~~YkealrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG  470 (966)
T KOG4626|consen  408 IMCYKEALRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG  470 (966)
T ss_pred             HHHHHHHHhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC
Confidence            77888887763       566778888888888888877777654    234445565555555544333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=1.4e-20  Score=204.67  Aligned_cols=262  Identities=18%  Similarity=0.171  Sum_probs=214.1

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..++|++|+.+|++++.+.     ..+|..+..++++|.++..+|+|++|+..|++++.+.+...    .++.+++.++.
T Consensus       306 ~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~----~~~~~la~~~~  376 (615)
T TIGR00990       306 ADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT----QSYIKRASMNL  376 (615)
T ss_pred             hhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHH
Confidence            5678999999999999754     45788999999999999999999999999999998876532    36778899999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                      .+|++++|..++++++++.    +..   ..     .....|.++...|+|++|+..|++++...+.......++|.++.
T Consensus       377 ~~g~~~eA~~~~~~al~~~----p~~---~~-----~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~  444 (615)
T TIGR00990       377 ELGDPDKAEEDFDKALKLN----SED---PD-----IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY  444 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhC----CCC---HH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence            9999999999999987652    111   11     22346788889999999999999999977767777788999999


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      .+|+|++|+..|++++.+.   -.                 ....++++|.+|..+|+|++|++.|++|+.+..+ ..+.
T Consensus       445 ~~g~~~eA~~~~~~al~~~---P~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~-~~~~  503 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNF---PE-----------------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE-TKPM  503 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhC---CC-----------------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc-cccc
Confidence            9999999999999999872   10                 1235789999999999999999999999998765 3445


Q ss_pred             CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                      |+.+...++..+.+|..+|++++|      +.+|++|+++-       |+....+.+++.++..+|+|++|+..+++
T Consensus       504 ~~~~~~l~~~a~~~~~~~~~~~eA------~~~~~kAl~l~-------p~~~~a~~~la~~~~~~g~~~eAi~~~e~  567 (615)
T TIGR00990       504 YMNVLPLINKALALFQWKQDFIEA------ENLCEKALIID-------PECDIAVATMAQLLLQQGDVDEALKLFER  567 (615)
T ss_pred             cccHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHhcC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            666777777777777778998887      88999998862       23234567889999999999999987644

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.85  E-value=1.1e-18  Score=189.99  Aligned_cols=187  Identities=14%  Similarity=0.131  Sum_probs=136.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .+.++..+|+|++|+..|++++...+..+.+...+|.++..+|+|++|+..|++++++.                  |+ 
T Consensus       371 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------------------P~-  431 (615)
T TIGR00990       371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------------------PD-  431 (615)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------cc-
Confidence            46666778888888888888888666666777788888888889999999988888771                  11 


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                       ....+.+||.++..+|+|++|+.+|++++.+        +|.....++++|.+|..+|++++|      +..|++|+++
T Consensus       432 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A------~~~~~~Al~l  496 (615)
T TIGR00990       432 -FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDVYNYYGELLLDQNKFDEA------IEKFDTAIEL  496 (615)
T ss_pred             -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHH------HHHHHHHHhc
Confidence             1234678999999999999999999999874        466667889999999999999887      8999999988


Q ss_pred             hhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchh----hHHHHHHHHHHHHHhccChhHH
Q 013549          358 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK----DEGERMKRWAEAAWRNRRVSLA  418 (441)
Q Consensus       358 ~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~----~eae~~~~~a~~~~~~~r~~~~  418 (441)
                      .......+..+...++....++...|+|++|+...++..    +-...+...+..++..+++..|
T Consensus       497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA  561 (615)
T TIGR00990       497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA  561 (615)
T ss_pred             CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            643223344444444444444555789999988764321    1134455677788888876554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.82  E-value=1.3e-17  Score=182.90  Aligned_cols=265  Identities=13%  Similarity=0.051  Sum_probs=152.9

Q ss_pred             CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549           55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      -|+|++.   +.+++.+. .   ..|++++|+..|++++.+.     |++   ..++..+|.++..+|++++|++.|+++
T Consensus        72 ~p~~~~~---l~~l~~~~-l---~~g~~~~A~~~l~~~l~~~-----P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~A  136 (656)
T PRK15174         72 AKNGRDL---LRRWVISP-L---ASSQPDAVLQVVNKLLAVN-----VCQ---PEDVLLVASVLLKSKQYATVADLAEQA  136 (656)
T ss_pred             CCCchhH---HHHHhhhH-h---hcCCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5666655   44555554 2   3689999999999999744     344   456899999999999999999999999


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      +.+.+..    ...+..++.++..+|++++|...+++.+...    +...   ...      .....+..+|++++|+..
T Consensus       137 l~l~P~~----~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----P~~~---~a~------~~~~~l~~~g~~~eA~~~  199 (656)
T PRK15174        137 WLAFSGN----SQIFALHLRTLVLMDKELQAISLARTQAQEV----PPRG---DMI------ATCLSFLNKSRLPEDHDL  199 (656)
T ss_pred             HHhCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----CCCH---HHH------HHHHHHHHcCCHHHHHHH
Confidence            8887653    2366778888999999999988777654221    1100   000      001123456666666666


Q ss_pred             HHhhhhccC-CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549          215 FKGLQEEEG-CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM  293 (441)
Q Consensus       215 ~~~aL~~~~-~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q  293 (441)
                      +++++...+ ........++.++..+|++++|+..|++++++   ..     .            ....+.+||.+|..+
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---~p-----~------------~~~~~~~Lg~~l~~~  259 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---GL-----D------------GAALRRSLGLAYYQS  259 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-----C------------CHHHHHHHHHHHHHc
Confidence            666555221 11112223344555566666666666665554   00     0            012345566666666


Q ss_pred             CCHHH----HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549          294 GNFGD----AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE  369 (441)
Q Consensus       294 G~y~e----Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~  369 (441)
                      |+|++    |+.+|++++.+.        |+....+.++|.+|..+|++++|      ...|++++++    .|+++   
T Consensus       260 G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA------~~~l~~al~l----~P~~~---  318 (656)
T PRK15174        260 GRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKA------IPLLQQSLAT----HPDLP---  318 (656)
T ss_pred             CCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHh----CCCCH---
Confidence            66654    444444444422        44445555555666666665554      5555555543    12222   


Q ss_pred             hhhccHHHHHHHhccHHHHHHHh
Q 013549          370 TKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       370 ~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      ....+++.++..+|+|++|+...
T Consensus       319 ~a~~~La~~l~~~G~~~eA~~~l  341 (656)
T PRK15174        319 YVRAMYARALRQVGQYTAASDEF  341 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHH
Confidence            22334555555555555555443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.80  E-value=3.5e-17  Score=166.78  Aligned_cols=255  Identities=17%  Similarity=0.135  Sum_probs=194.0

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|++++|+..|++++..        +|....++..+|.++..+|+|++|+..+++++.............+..++.+|.
T Consensus        47 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~  118 (389)
T PRK11788         47 LNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL  118 (389)
T ss_pred             hcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            468899999999999974        345567899999999999999999999999876432111112346788999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCc-----hHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCT-----GSAALSY  232 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~-----~~~a~~~  232 (441)
                      .+|++++|..+++++++.    .+.   .     ..+....+.++..+|+|++|+.+|++++...+..     ......+
T Consensus       119 ~~g~~~~A~~~~~~~l~~----~~~---~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDE----GDF---A-----EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL  186 (389)
T ss_pred             HCCCHHHHHHHHHHHHcC----Ccc---h-----HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            999999999999888643    110   0     1112234666778999999999999998833222     1223467


Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      +.++..+|++++|+.+|++++++.   ..                 ...+...||.+|..+|++++|.++|++++.+   
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~---p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---  243 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAAD---PQ-----------------CVRASILLGDLALAQGDYAAAIEALERVEEQ---  243 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHC---cC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence            888999999999999999999871   11                 1235678999999999999999999999875   


Q ss_pred             hhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549          313 LFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSV  391 (441)
Q Consensus       313 ~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~  391 (441)
                           +|. +..+++.|+.+|..+|++++|      ...+++++++.    |+.+    ...+++.++..+|++++|+..
T Consensus       244 -----~p~~~~~~~~~l~~~~~~~g~~~~A------~~~l~~~~~~~----p~~~----~~~~la~~~~~~g~~~~A~~~  304 (389)
T PRK11788        244 -----DPEYLSEVLPKLMECYQALGDEAEG------LEFLRRALEEY----PGAD----LLLALAQLLEEQEGPEAAQAL  304 (389)
T ss_pred             -----ChhhHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCch----HHHHHHHHHHHhCCHHHHHHH
Confidence                 233 356788999999999999987      78888887762    2221    235788899999999999887


Q ss_pred             hhc
Q 013549          392 QQN  394 (441)
Q Consensus       392 ~~~  394 (441)
                      ...
T Consensus       305 l~~  307 (389)
T PRK11788        305 LRE  307 (389)
T ss_pred             HHH
Confidence            643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.80  E-value=2.4e-17  Score=180.97  Aligned_cols=267  Identities=12%  Similarity=-0.009  Sum_probs=201.5

Q ss_pred             CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549           55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      .|++++.   ..++|..+.    ..|++++|+..|++++.+.        |+-..++.+++.++..+|++++|+..++++
T Consensus       106 ~P~~~~a---~~~la~~l~----~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~  170 (656)
T PRK15174        106 NVCQPED---VLLVASVLL----KSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQ  170 (656)
T ss_pred             CCCChHH---HHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            4666554   566777763    3689999999999999754        334557888999999999999999999988


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      +...+...    ..+..+ ..+..+|++++|...+++++...   .. ..   ..    ...+.+.++..+|++++|+..
T Consensus       171 ~~~~P~~~----~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~---~~-~~---~~----~~~~l~~~l~~~g~~~eA~~~  234 (656)
T PRK15174        171 AQEVPPRG----DMIATC-LSFLNKSRLPEDHDLARALLPFF---AL-ER---QE----SAGLAVDTLCAVGKYQEAIQT  234 (656)
T ss_pred             HHhCCCCH----HHHHHH-HHHHHcCCHHHHHHHHHHHHhcC---CC-cc---hh----HHHHHHHHHHHCCCHHHHHHH
Confidence            76655421    123333 34678899999999888775332   10 00   00    112345667789999999999


Q ss_pred             HHhhhhccCCchHHHHHHHHHHHHccChHH----HHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549          215 FKGLQEEEGCTGSAALSYGEYLHATRNFLL----AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE  290 (441)
Q Consensus       215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~e----A~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly  290 (441)
                      |++++...+....+..++|.++..+|++++    |+.+|++++++.                  |+  ...++.+||.++
T Consensus       235 ~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~------------------P~--~~~a~~~lg~~l  294 (656)
T PRK15174        235 GESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN------------------SD--NVRIVTLYADAL  294 (656)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC------------------CC--CHHHHHHHHHHH
Confidence            999999777777788899999999999996    899999999881                  11  134678999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHh
Q 013549          291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVET  370 (441)
Q Consensus       291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~  370 (441)
                      ..+|+|++|+..|++++.+        +|+......+||.+|..+|++++|      ...|+++++.    .|+++   .
T Consensus       295 ~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA------~~~l~~al~~----~P~~~---~  353 (656)
T PRK15174        295 IRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAA------SDEFVQLARE----KGVTS---K  353 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHh----Cccch---H
Confidence            9999999999999999985        455556678899999999999987      7888888775    22322   2


Q ss_pred             hhccHHHHHHHhccHHHHHHHhh
Q 013549          371 KVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       371 ~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      ...+++.++...|++++|+....
T Consensus       354 ~~~~~a~al~~~G~~deA~~~l~  376 (656)
T PRK15174        354 WNRYAAAALLQAGKTSEAESVFE  376 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHH
Confidence            33446778889999999988753

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.80  E-value=5e-17  Score=178.76  Aligned_cols=288  Identities=14%  Similarity=0.139  Sum_probs=190.5

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|++++|+.++++++...        |....++..+|.+|...|+|++|+..|++++...+..    ...+..++.++..
T Consensus       580 ~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~  647 (899)
T TIGR02917       580 KGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS----ALALLLLADAYAV  647 (899)
T ss_pred             CCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHH
Confidence            456666666666665422        2223456666666666666666666666665554322    1234455555666


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCC------------Ccchhhhhh----------HhHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKP------------ENYKTYGAV----------NSRANAVKGLVELAHGNLESAESFFK  216 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~------------~~~~~~~~l----------~~~a~al~gl~~~~qG~y~eAe~l~~  216 (441)
                      +|++++|..++++++.+......            ..++++..+          ........|.++..+|+|++|...|+
T Consensus       648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  727 (899)
T TIGR02917       648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR  727 (899)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            66666666666555433110000            000000000          01112235667778899999999999


Q ss_pred             hhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCH
Q 013549          217 GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF  296 (441)
Q Consensus       217 ~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y  296 (441)
                      +++...+.. .+..+++.++..+|++++|+..++++++..   .               +  ...+++++|.+|..+|++
T Consensus       728 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~---------------~--~~~~~~~la~~~~~~g~~  786 (899)
T TIGR02917       728 KALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH---P---------------N--DAVLRTALAELYLAQKDY  786 (899)
T ss_pred             HHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C---------------C--CHHHHHHHHHHHHHCcCH
Confidence            888844333 556778888888999999999998888751   1               1  124578999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHH
Q 013549          297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTD  376 (441)
Q Consensus       297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~  376 (441)
                      ++|+++|+++++.        +|.-..+++++|.+|..+|+ .+|      ..+|++++++.    ++++.   .+++++
T Consensus       787 ~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A------~~~~~~~~~~~----~~~~~---~~~~~~  844 (899)
T TIGR02917       787 DKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRA------LEYAEKALKLA----PNIPA---ILDTLG  844 (899)
T ss_pred             HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHH------HHHHHHHHhhC----CCCcH---HHHHHH
Confidence            9999999999975        45556778999999999999 665      88999998863    34443   456789


Q ss_pred             HHHHHhccHHHHHHHhhchhh----HHHHHHHHHHHHHhccChhHHHHh
Q 013549          377 IVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEAL  421 (441)
Q Consensus       377 ~~~~~~g~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~~~~~l  421 (441)
                      .++..+|++++|+....+-.+    ..+.+...+..+|+.++...+..+
T Consensus       845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  893 (899)
T TIGR02917       845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE  893 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999997644333    246666789999999998777654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.79  E-value=1.5e-16  Score=162.08  Aligned_cols=246  Identities=17%  Similarity=0.167  Sum_probs=186.0

Q ss_pred             hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549           59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~  138 (441)
                      |+.......++.++.    ..|+|++|+.++++++..-    .........++.+||.+|..+|+|++|+..|+++++..
T Consensus        66 p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  137 (389)
T PRK11788         66 PETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG  137 (389)
T ss_pred             cccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence            344455666777763    3689999999999998631    11223456789999999999999999999999997653


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549          139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL  218 (441)
Q Consensus       139 ~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a  218 (441)
                      +.    ...++..++.++..+|++++|..++++++...    +....  ... .......+.++..+|++++|+.+|+++
T Consensus       138 ~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~--~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a  206 (389)
T PRK11788        138 DF----AEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLR--VEI-AHFYCELAQQALARGDLDAARALLKKA  206 (389)
T ss_pred             cc----hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcch--HHH-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            32    23467889999999999999999988876432    11110  001 111123466677899999999999999


Q ss_pred             hhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549          219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD  298 (441)
Q Consensus       219 L~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e  298 (441)
                      +...+....+...++.++..+|++++|..+|++++++-                  |.. ...++..|+.+|..+|++++
T Consensus       207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------p~~-~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD------------------PEY-LSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------------------hhh-HHHHHHHHHHHHHHcCCHHH
Confidence            98655555667788999999999999999999998761                  000 12356789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      |..++++++.+        +|+... +..++.+|..+|++++|      ..+++++++.
T Consensus       268 A~~~l~~~~~~--------~p~~~~-~~~la~~~~~~g~~~~A------~~~l~~~l~~  311 (389)
T PRK11788        268 GLEFLRRALEE--------YPGADL-LLALAQLLEEQEGPEAA------QALLREQLRR  311 (389)
T ss_pred             HHHHHHHHHHh--------CCCchH-HHHHHHHHHHhCCHHHH------HHHHHHHHHh
Confidence            99999999886        344333 37899999999999987      8899998876

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.77  E-value=3.7e-16  Score=181.48  Aligned_cols=293  Identities=12%  Similarity=0.057  Sum_probs=191.2

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCch------hHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES------WRGISLLAMSTLLYESGNYVEAIEKLQKVE  135 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~------~~a~~l~nLa~l~~~qG~y~eA~e~~~ral  135 (441)
                      +..+..+|.++.    .+|+|++|+.+|++++.+........+.      .....+..+|..+..+|++++|++.|++++
T Consensus       303 ~~a~~~Lg~~~~----~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al  378 (1157)
T PRK11447        303 SEALGALGQAYS----QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR  378 (1157)
T ss_pred             HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344667777773    3689999999999999865332211110      012234567889999999999999999999


Q ss_pred             HhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC-----------CcchhhhhhH-------------
Q 013549          136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP-----------ENYKTYGAVN-------------  191 (441)
Q Consensus       136 ~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~-----------~~~~~~~~l~-------------  191 (441)
                      .+.+..    ..++..|+.++..+|++++|+.++++++++.-....           ..++++....             
T Consensus       379 ~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~  454 (1157)
T PRK11447        379 QVDNTD----SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD  454 (1157)
T ss_pred             HhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence            887643    246778999999999999999999999865211100           0000000000             


Q ss_pred             ------hHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549          192 ------SRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM  265 (441)
Q Consensus       192 ------~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~  265 (441)
                            .......+.++..+|++++|+..|++++...+..+.+...+|.+|..+|++++|+..|+++++..   -.  +.
T Consensus       455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---P~--~~  529 (1157)
T PRK11447        455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---PN--DP  529 (1157)
T ss_pred             HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC--CH
Confidence                  00001134556689999999999999999777777788899999999999999999999998761   11  00


Q ss_pred             CC-c---------c-------------ccccch--hH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          266 NT-L---------G-------------SCNMAL--EE----VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       266 ~~-l---------g-------------~~~~~~--~~----~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      .. +         +             .....+  ..    +.......++..+..+|++++|+.+++            
T Consensus       530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~------------  597 (1157)
T PRK11447        530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR------------  597 (1157)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH------------
Confidence            00 0         0             000000  00    000012345666677777777766654            


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      .||.....+.+||.+|..+|++++|      +..|++++++.    |+++   ..+.+++.++..+|+|++|+...
T Consensus       598 ~~p~~~~~~~~La~~~~~~g~~~~A------~~~y~~al~~~----P~~~---~a~~~la~~~~~~g~~~eA~~~l  660 (1157)
T PRK11447        598 QQPPSTRIDLTLADWAQQRGDYAAA------RAAYQRVLTRE----PGNA---DARLGLIEVDIAQGDLAAARAQL  660 (1157)
T ss_pred             hCCCCchHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCH---HHHHHHHHHHHHCCCHHHHHHHH
Confidence            3455555677889999999998887      78888887752    3333   24456777777777777776544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.77  E-value=2.7e-16  Score=172.95  Aligned_cols=267  Identities=21%  Similarity=0.208  Sum_probs=150.6

Q ss_pred             HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh
Q 013549           63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL  142 (441)
Q Consensus        63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l  142 (441)
                      .....++..+.    ..|++++|+.+|++++.+.        |....++.++|.++...|++++|++.|++++...+.. 
T Consensus       466 ~~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-  532 (899)
T TIGR02917       466 SLHNLLGAIYL----GKGDLAKAREAFEKALSIE--------PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-  532 (899)
T ss_pred             HHHHHHHHHHH----hCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-
Confidence            34455666652    3567888888888887643        2334567778888888888888888888876655432 


Q ss_pred             hhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Q 013549          143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE  222 (441)
Q Consensus       143 g~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~  222 (441)
                         ..++..++.++...|++++|..++++++.......       .     .....+.++..+|++++|..++++++...
T Consensus       533 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  597 (899)
T TIGR02917       533 ---LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI-------E-----PALALAQYYLGKGQLKKALAILNEAADAA  597 (899)
T ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-------h-----HHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence               23556677777777777777777766643211000       0     00112333445555555555555555543


Q ss_pred             CCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013549          223 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI  302 (441)
Q Consensus       223 ~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l  302 (441)
                      +....+...++.++..+|++++|+..|+++++.   ...                 ...++..+|.+|..+|++++|...
T Consensus       598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~  657 (899)
T TIGR02917       598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL---QPD-----------------SALALLLLADAYAVMKNYAKAITS  657 (899)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----------------ChHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444445555555555555555555555544   000                 011234455555555555555555


Q ss_pred             HHHHHHHHHH--------------------------hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          303 LTRTLTKTEE--------------------------LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       303 ~~rAL~i~e~--------------------------~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                      |++++.+...                          .+...+|.....+..+|.+|..+|++++|      ...|++++.
T Consensus       658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~  731 (899)
T TIGR02917       658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA------IQAYRKALK  731 (899)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH------HHHHHHHHh
Confidence            5555443211                          11223455566677788888888888876      777777766


Q ss_pred             HhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549          357 FLKAPPLESEGVETKVDRTDIVALARGGYAEALSV  391 (441)
Q Consensus       357 i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~  391 (441)
                      +..    +.    ..+.+++.++...|++.+|+..
T Consensus       732 ~~~----~~----~~~~~l~~~~~~~g~~~~A~~~  758 (899)
T TIGR02917       732 RAP----SS----QNAIKLHRALLASGNTAEAVKT  758 (899)
T ss_pred             hCC----Cc----hHHHHHHHHHHHCCCHHHHHHH
Confidence            521    11    2334556666666666666543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.76  E-value=8.4e-16  Score=178.51  Aligned_cols=293  Identities=15%  Similarity=0.103  Sum_probs=201.4

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh----------HH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR----------VA  147 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~----------~~  147 (441)
                      ..|+|++|+..|++++.+.        |....++..||.+|..+|+|++|+..|++++++.+......          ..
T Consensus       281 ~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        281 DSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            4689999999999999854        33467899999999999999999999999998876532110          01


Q ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchH
Q 013549          148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGS  227 (441)
Q Consensus       148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~  227 (441)
                      ....++..+..+|++++|..++++++.+.    +.   +     ..+...+|.++..+|++++|+.+|++++...+....
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~----P~---~-----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVD----NT---D-----SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CC---C-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            22345667889999999999999987652    11   1     112234577888999999999999999984333322


Q ss_pred             HHHH------------------------------------------HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549          228 AALS------------------------------------------YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM  265 (441)
Q Consensus       228 ~a~~------------------------------------------~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~  265 (441)
                      +...                                          +|.++..+|++++|+..|++++++.         
T Consensus       421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---------  491 (1157)
T PRK11447        421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---------  491 (1157)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------
Confidence            2222                                          3455667899999999999998871         


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhH
Q 013549          266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL  345 (441)
Q Consensus       266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~  345 (441)
                               |+  ......+||.+|..+|++++|+..|++++.+     -|++|   ..+..+|..+..+|++++|....
T Consensus       492 ---------P~--~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-----~P~~~---~~~~a~al~l~~~~~~~~Al~~l  552 (1157)
T PRK11447        492 ---------PG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-----KPNDP---EQVYAYGLYLSGSDRDRAALAHL  552 (1157)
T ss_pred             ---------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHhCCCHHHHHHHH
Confidence                     11  1234678999999999999999999998863     23343   44556667777777777663221


Q ss_pred             HH-------------------------------HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          346 IQ-------------------------------EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       346 ~A-------------------------------e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                      ..                               .+-+..|+++++. .|+++   ....+++.++..+|+|++|+..+..
T Consensus       553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~---~~~~~La~~~~~~g~~~~A~~~y~~  628 (1157)
T PRK11447        553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPST---RIDLTLADWAQQRGDYAAARAAYQR  628 (1157)
T ss_pred             HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCc---hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            10                               1112334444442 23333   3445789999999999999887643


Q ss_pred             hhh----HHHHHHHHHHHHHhccChhHHHHhc
Q 013549          395 RKD----EGERMKRWAEAAWRNRRVSLAEALN  422 (441)
Q Consensus       395 r~~----eae~~~~~a~~~~~~~r~~~~~~l~  422 (441)
                      -..    -.+.+...+..+...+++..|.+.-
T Consensus       629 al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l  660 (1157)
T PRK11447        629 VLTREPGNADARLGLIEVDIAQGDLAAARAQL  660 (1157)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            221    1466667777777777776665443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.75  E-value=4.1e-16  Score=176.78  Aligned_cols=264  Identities=14%  Similarity=0.027  Sum_probs=197.3

Q ss_pred             CCchH--HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           56 LNSNP--VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        56 ~~h~~--~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      |..|+  .+....+++.++.     .|++++|+..|.+++...     +++    .....+|.++...|+|++|+..|++
T Consensus       469 ~~~p~~~~~~a~~~LG~~l~-----~~~~~eAi~a~~~Al~~~-----Pd~----~~~L~lA~al~~~Gr~eeAi~~~rk  534 (987)
T PRK09782        469 GDMSPSYDAAAWNRLAKCYR-----DTLPGVALYAWLQAEQRQ-----PDA----WQHRAVAYQAYQVEDYATALAAWQK  534 (987)
T ss_pred             ccCCCCCCHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHhC-----Cch----HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44555  6778889999872     368999999999999755     222    1366778888999999999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549          134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES  213 (441)
Q Consensus       134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~  213 (441)
                      ++...+..     ..+.+++.++.+.|+..+|..++++++++.    +..+    .+    ....+.....+|++++|+.
T Consensus       535 a~~~~p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~----P~~~----~l----~~~La~~l~~~Gr~~eAl~  597 (987)
T PRK09782        535 ISLHDMSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRG----LGDN----AL----YWWLHAQRYIPGQPELALN  597 (987)
T ss_pred             HhccCCCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CccH----HH----HHHHHHHHHhCCCHHHHHH
Confidence            75543221     235677888999999999999999887542    2111    00    0111222235699999999


Q ss_pred             HHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549          214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM  293 (441)
Q Consensus       214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q  293 (441)
                      +|++++...+. ..+..++|.++..+|++++|+..|++++++.                  |+  ...+.++||.++..+
T Consensus       598 ~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------------------Pd--~~~a~~nLG~aL~~~  656 (987)
T PRK09782        598 DLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE------------------PN--NSNYQAALGYALWDS  656 (987)
T ss_pred             HHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHHHC
Confidence            99999996664 6777899999999999999999999999981                  11  124678999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549          294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD  373 (441)
Q Consensus       294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~  373 (441)
                      |++++|+++|++|+.+        +|+-...+.|||.+|..+|++++|      +..|++|+++.       |+.+....
T Consensus       657 G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA------~~~l~~Al~l~-------P~~a~i~~  715 (987)
T PRK09782        657 GDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAAT------QHYARLVIDDI-------DNQALITP  715 (987)
T ss_pred             CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcC-------CCCchhhh
Confidence            9999999999999986        466667899999999999999987      89999998775       22222223


Q ss_pred             cHHHHHHHhccHHHHHHHh
Q 013549          374 RTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       374 nl~~~~~~~g~yaeal~~~  392 (441)
                      -.+.+...+.++..+....
T Consensus       716 ~~g~~~~~~~~~~~a~~~~  734 (987)
T PRK09782        716 LTPEQNQQRFNFRRLHEEV  734 (987)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence            3445555555555555544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.69  E-value=8.8e-15  Score=166.03  Aligned_cols=250  Identities=10%  Similarity=-0.053  Sum_probs=190.7

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESW--RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY  156 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~--~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~  156 (441)
                      .|++.++...++......     +..|.  -+.++.++|.++.. |++.+|+..|.+++...+...     ....++..+
T Consensus       451 ~~~~~~~~~~~~~~~~al-----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-----~~L~lA~al  519 (987)
T PRK09782        451 QSQLPGIADNCPAIVRLL-----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-----QHRAVAYQA  519 (987)
T ss_pred             HhhhhhhhhhHHHHHHhc-----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----HHHHHHHHH
Confidence            456666666666666544     34556  78899999999987 999999999999987765421     233345556


Q ss_pred             HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549          157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL  236 (441)
Q Consensus       157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~  236 (441)
                      .+.|++++|...+++++..    .+. .   ...     ...+.++..+|++++|+.+|++++...+........++..+
T Consensus       520 ~~~Gr~eeAi~~~rka~~~----~p~-~---~a~-----~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l  586 (987)
T PRK09782        520 YQVEDYATALAAWQKISLH----DMS-N---EDL-----LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR  586 (987)
T ss_pred             HHCCCHHHHHHHHHHHhcc----CCC-c---HHH-----HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            7899999999998876321    110 0   111     23466678899999999999999996555555555555555


Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      ..+|++++|+.+|++|+++.                  |+   ...+.++|.++..+|++++|+..|++++.+       
T Consensus       587 ~~~Gr~~eAl~~~~~AL~l~------------------P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------  638 (987)
T PRK09782        587 YIPGQPELALNDLTRSLNIA------------------PS---ANAYVARATIYRQRHNVPAAVSDLRAALEL-------  638 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHhC------------------CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence            56799999999999999881                  11   135789999999999999999999999987       


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                       +|+-...++|||.++..+|++++|      +..|++|+++    .|+++   ....|++.++..+|++++|+....+
T Consensus       639 -~Pd~~~a~~nLG~aL~~~G~~eeA------i~~l~~AL~l----~P~~~---~a~~nLA~al~~lGd~~eA~~~l~~  702 (987)
T PRK09782        639 -EPNNSNYQAALGYALWDSGDIAQS------REMLERAHKG----LPDDP---ALIRQLAYVNQRLDDMAATQHYARL  702 (987)
T ss_pred             -CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHh----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence             355557899999999999999887      8899999887    24444   4677999999999999999886533

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.67  E-value=1.9e-14  Score=132.78  Aligned_cols=196  Identities=18%  Similarity=0.117  Sum_probs=155.3

Q ss_pred             CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549          102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP  181 (441)
Q Consensus       102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~  181 (441)
                      .+.+..+..+.++|..|..+|+|++|+..+++++...+..    ...+..++.++..+|++++|..++++++++....  
T Consensus        25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--   98 (234)
T TIGR02521        25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLGELEKAEDSFRRALTLNPNN--   98 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Confidence            4556678999999999999999999999999998776543    2366778999999999999999999987542111  


Q ss_pred             CcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc--cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549          182 ENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE--EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ  259 (441)
Q Consensus       182 ~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~--~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~  259 (441)
                                .......+.++..+|+|++|+.+|++++..  .+.......+++.++..+|++++|..+|++++.+.   
T Consensus        99 ----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---  165 (234)
T TIGR02521        99 ----------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID---  165 (234)
T ss_pred             ----------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence                      012234577788999999999999999983  23334566778999999999999999999999871   


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchh
Q 013549          260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE  339 (441)
Q Consensus       260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~e  339 (441)
                      ..     .            ..++..+|.++..+|+|++|..++++++.+     .+.+|   ..+..++.++..+|+.+
T Consensus       166 ~~-----~------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~  220 (234)
T TIGR02521       166 PQ-----R------------PESLLELAELYYLRGQYKDARAYLERYQQT-----YNQTA---ESLWLGIRIARALGDVA  220 (234)
T ss_pred             cC-----C------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHH
Confidence            11     1            134679999999999999999999999987     23343   44557789999999988


Q ss_pred             hh
Q 013549          340 HS  341 (441)
Q Consensus       340 eA  341 (441)
                      +|
T Consensus       221 ~a  222 (234)
T TIGR02521       221 AA  222 (234)
T ss_pred             HH
Confidence            87

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=1.8e-14  Score=152.03  Aligned_cols=290  Identities=18%  Similarity=0.169  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      -.-|-.+|..| +.- ++-+..+|+.+|++ +.       ..|+.|.-++.++|..|+++++|++|+..|+.+-++.+--
T Consensus       317 ~~llr~~~~~~-~~~-s~y~~~~A~~~~~k-lp-------~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r  386 (638)
T KOG1126|consen  317 MELLRGLGEGY-RSL-SQYNCREALNLFEK-LP-------SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR  386 (638)
T ss_pred             HHHHHHHHHHH-HHH-HHHHHHHHHHHHHh-hH-------HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            33344477776 333 67778899999998 65       4589999999999999999999999999999986655432


Q ss_pred             hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 013549          142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE  221 (441)
Q Consensus       142 lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~  221 (441)
                      +    ..++-...+.+.+.+..+-..+++..++.. +..|+.|           -..|..+..|+++++|+++|+||+..
T Consensus       387 v----~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-~~sPesW-----------ca~GNcfSLQkdh~~Aik~f~RAiQl  450 (638)
T KOG1126|consen  387 V----KGMEIYSTTLWHLQDEVALSYLAQDLIDTD-PNSPESW-----------CALGNCFSLQKDHDTAIKCFKRAIQL  450 (638)
T ss_pred             c----cchhHHHHHHHHHHhhHHHHHHHHHHHhhC-CCCcHHH-----------HHhcchhhhhhHHHHHHHHHHHhhcc
Confidence            2    122222333334444444344443332111 0112112           23466677788899999999988884


Q ss_pred             cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013549          222 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE  301 (441)
Q Consensus       222 ~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~  301 (441)
                      ++...-+-.-+|-=+..+-.|+.|...|++||.+   .               |.|  -.+++.||.+|.+|++|+.|+-
T Consensus       451 dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---~---------------~rh--YnAwYGlG~vy~Kqek~e~Ae~  510 (638)
T KOG1126|consen  451 DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---D---------------PRH--YNAWYGLGTVYLKQEKLEFAEF  510 (638)
T ss_pred             CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---C---------------chh--hHHHHhhhhheeccchhhHHHH
Confidence            4433222111232334567888888888888876   1               222  3577888999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH
Q 013549          302 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA  381 (441)
Q Consensus       302 l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~  381 (441)
                      +|++|++|        .|.-...+..+|.+|.+.|+.|+|      ..+|++|+.+-.      .+++..+ +.+.++..
T Consensus       511 ~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~A------L~~~~~A~~ld~------kn~l~~~-~~~~il~~  569 (638)
T KOG1126|consen  511 HFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKA------LQLYEKAIHLDP------KNPLCKY-HRASILFS  569 (638)
T ss_pred             HHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHH------HHHHHHHHhcCC------CCchhHH-HHHHHHHh
Confidence            99988877        588888888888888888888876      778888866531      1233333 36667777


Q ss_pred             hccHHHHHHHhhc----hhhHHHHHHHHHHHHHhccChhHH
Q 013549          382 RGGYAEALSVQQN----RKDEGERMKRWAEAAWRNRRVSLA  418 (441)
Q Consensus       382 ~g~yaeal~~~~~----r~~eae~~~~~a~~~~~~~r~~~~  418 (441)
                      .++|.||+...+.    .-+|+-..+-......+-++..+|
T Consensus       570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence            7888888876432    233455555566666655554444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.64  E-value=6.3e-14  Score=129.34  Aligned_cols=210  Identities=12%  Similarity=0.155  Sum_probs=166.8

Q ss_pred             cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      ..++.+..+....+++..+.    ..|+|++|+.++++++..        +|....++..+|.+|..+|++++|++.|++
T Consensus        23 ~~~~~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~   90 (234)
T TIGR02521        23 RTTDRNKAAKIRVQLALGYL----EQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRR   90 (234)
T ss_pred             hcccCCcHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45667778888899999984    368999999999999864        355568899999999999999999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549          134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES  213 (441)
Q Consensus       134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~  213 (441)
                      ++.+.+..    ...+.+++.++..+|++++|..+++++++...  .+.   .     .......+.++..+|++++|+.
T Consensus        91 al~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~---~-----~~~~~~l~~~~~~~g~~~~A~~  156 (234)
T TIGR02521        91 ALTLNPNN----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL--YPQ---P-----ARSLENAGLCALKAGDFDKAEK  156 (234)
T ss_pred             HHhhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--ccc---c-----hHHHHHHHHHHHHcCCHHHHHH
Confidence            98876543    23677889999999999999999998875321  110   0     1112235778889999999999


Q ss_pred             HHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549          214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM  293 (441)
Q Consensus       214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q  293 (441)
                      +|++++...+....+...++.++..+|++++|..++++++.+.   ..     .            ...+..++.++..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-----~------------~~~~~~~~~~~~~~  216 (234)
T TIGR02521       157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTY---NQ-----T------------AESLWLGIRIARAL  216 (234)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----C------------HHHHHHHHHHHHHH
Confidence            9999999665566677888999999999999999999999871   11     1            12345788999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 013549          294 GNFGDAEEILTRTLTK  309 (441)
Q Consensus       294 G~y~eAe~l~~rAL~i  309 (441)
                      |++++|..+.++...+
T Consensus       217 ~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       217 GDVAAAQRYGAQLQKL  232 (234)
T ss_pred             hhHHHHHHHHHHHHhh
Confidence            9999999988877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.62  E-value=3.5e-13  Score=145.38  Aligned_cols=248  Identities=13%  Similarity=0.025  Sum_probs=179.3

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhhhhhhhhhHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE---------SGNYVEAIEKLQKVENFKNSILGVRVAA  148 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~---------qG~y~eA~e~~~ral~i~~~~lg~~~~a  148 (441)
                      ..+.+++|+.+|++++++.        |..+..+.+||.+|..         .|++++|+..+++++++.+...    .+
T Consensus       273 ~~~~~~~A~~~~~~Al~ld--------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~----~a  340 (553)
T PRK12370        273 TPYSLQQALKLLTQCVNMS--------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP----QA  340 (553)
T ss_pred             CHHHHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH----HH
Confidence            4567899999999999743        4446677788877653         3458999999999998876542    35


Q ss_pred             HHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHH
Q 013549          149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSA  228 (441)
Q Consensus       149 l~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~  228 (441)
                      +..++.++..+|++++|...+++++++.    |..   ..     +....|.++..+|++++|+..|++++...+.....
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~----P~~---~~-----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~  408 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLS----PIS---AD-----IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA  408 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC----CCC---HH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence            6778888999999999999999997553    211   11     22345788889999999999999999966655544


Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ...++.++..+|+|++|+..+++++...    .    +.           ....+.+||.+|..+|++++|+..+.+.+ 
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~----p~-----------~~~~~~~la~~l~~~G~~~eA~~~~~~~~-  468 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQH----L----QD-----------NPILLSMQVMFLSLKGKHELARKLTKEIS-  468 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhc----c----cc-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHhh-
Confidence            4555666778999999999999988761    0    00           11346889999999999999999987753 


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHH
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA  388 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaea  388 (441)
                             +..|.-....+.|+.+|..+|+  +|      ...+++.++..+. .+.++..      ...++-.+|+-+.+
T Consensus       469 -------~~~~~~~~~~~~l~~~~~~~g~--~a------~~~l~~ll~~~~~-~~~~~~~------~~~~~~~~g~~~~~  526 (553)
T PRK12370        469 -------TQEITGLIAVNLLYAEYCQNSE--RA------LPTIREFLESEQR-IDNNPGL------LPLVLVAHGEAIAE  526 (553)
T ss_pred             -------hccchhHHHHHHHHHHHhccHH--HH------HHHHHHHHHHhhH-hhcCchH------HHHHHHHHhhhHHH
Confidence                   3466666778899999999984  43      5666665555432 2333332      45566666665555


Q ss_pred             HHH
Q 013549          389 LSV  391 (441)
Q Consensus       389 l~~  391 (441)
                      ..+
T Consensus       527 ~~~  529 (553)
T PRK12370        527 KMW  529 (553)
T ss_pred             HHH
Confidence            554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.59  E-value=1.9e-12  Score=144.79  Aligned_cols=284  Identities=13%  Similarity=0.032  Sum_probs=198.6

Q ss_pred             CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549           56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE  135 (441)
Q Consensus        56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral  135 (441)
                      ..+|.+...+.++..+..    -.|++++|+.+++++..+        .|.-+..+.++|.++..+|++.+|++.|++++
T Consensus         9 ~~~~~~~~~~~d~~~ia~----~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al   76 (765)
T PRK10049          9 LKSALSNNQIADWLQIAL----WAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKAL   76 (765)
T ss_pred             hccCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456677777888777753    368999999999999852        35567889999999999999999999999999


Q ss_pred             HhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF  215 (441)
Q Consensus       136 ~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~  215 (441)
                      .+.+...    ....+++.++..+|++++|..+++++++.    .|..   ..      ....+.++..+|++++|+..|
T Consensus        77 ~~~P~~~----~a~~~la~~l~~~g~~~eA~~~l~~~l~~----~P~~---~~------~~~la~~l~~~g~~~~Al~~l  139 (765)
T PRK10049         77 SLEPQND----DYQRGLILTLADAGQYDEALVKAKQLVSG----APDK---AN------LLALAYVYKRAGRHWDELRAM  139 (765)
T ss_pred             HhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCC---HH------HHHHHHHHHHCCCHHHHHHHH
Confidence            8876542    24567888899999999999998888644    2211   11      123577788999999999999


Q ss_pred             HhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHH---------------------------------------HH
Q 013549          216 KGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIE---------------------------------------VL  256 (441)
Q Consensus       216 ~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~---------------------------------------i~  256 (441)
                      ++++...+....+...++.++...|..++|...+++++.                                       .+
T Consensus       140 ~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~  219 (765)
T PRK10049        140 TQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY  219 (765)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence            999997777777778888888888888888877763221                                       11


Q ss_pred             HhhcccCCCCCccccccchhHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549          257 AEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK  335 (441)
Q Consensus       257 ~~~~~~~~~~~lg~~~~~~~~~~~~al~-nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q  335 (441)
                      +....     .. +.++........+.. .++.+ ..+|++++|+..|++++..     +++-|..+..+  +|.+|..+
T Consensus       220 ~~ll~-----~~-~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~~--la~~yl~~  285 (765)
T PRK10049        220 DALEA-----LW-HDNPDATADYQRARIDRLGAL-LARDRYKDVISEYQRLKAE-----GQIIPPWAQRW--VASAYLKL  285 (765)
T ss_pred             HHHHh-----hc-ccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhcc-----CCCCCHHHHHH--HHHHHHhc
Confidence            11000     00 000000000112223 36655 5779999999999997765     44446554433  58899999


Q ss_pred             hchhhhhhhHHHHHHHHHHHHHhhcCCCCCcc-hHhhhccHHHHHHHhccHHHHHHHh
Q 013549          336 AMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       336 G~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~-~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      |++++|      +..|+++++.    .+..+. ......++..++..+|+|++|+...
T Consensus       286 g~~e~A------~~~l~~~l~~----~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l  333 (765)
T PRK10049        286 HQPEKA------QSILTELFYH----PETIADLSDEELADLFYSLLESENYPGALTVT  333 (765)
T ss_pred             CCcHHH------HHHHHHHhhc----CCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence            999987      8899998753    122211 1123345666778899999998763

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.59  E-value=2.1e-12  Score=146.01  Aligned_cols=286  Identities=13%  Similarity=0.012  Sum_probs=206.2

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCc-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAE-SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEALAGLY  156 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h-~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-~~~al~~La~l~  156 (441)
                      .|++++|..+++++...........+ ...+.....+|.++..+|+|++|+..+++++...+..... ...+++.++.++
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~  501 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH  501 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            57899999999999876533221122 2256667778999999999999999999998754322111 234567788889


Q ss_pred             HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----cCCc---hHH
Q 013549          157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE-----EGCT---GSA  228 (441)
Q Consensus       157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-----~~~~---~~~  228 (441)
                      ..+|++++|..++++++.+....++..      .........+.++..+|++++|+.++++++..     ....   ..+
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~g~~~------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  575 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQHDVYH------YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL  575 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhcchH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            999999999999999998877654321      11222334577788999999999999999981     1111   122


Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ...++.++..+|++++|..++++++++...  .       +     +. ....++.++|.++..+|++++|...+.+++.
T Consensus       576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~--~-------~-----~~-~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        576 LRIRAQLLWEWARLDEAEQCARKGLEVLSN--Y-------Q-----PQ-QQLQCLAMLAKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhHHhhhc--c-------C-----ch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345688899999999999999999999531  1       1     00 1234677899999999999999999999988


Q ss_pred             HHHHhh--------------------CC----------------CCc-hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549          309 KTEELF--------------------GS----------------HHP-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLY  351 (441)
Q Consensus       309 i~e~~l--------------------G~----------------~HP-~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly  351 (441)
                      +..+..                    |.                ..+ .....+.++|.++..+|++++|      ..++
T Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A------~~~l  714 (903)
T PRK04841        641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEA------EIIL  714 (903)
T ss_pred             HHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHH------HHHH
Confidence            765421                    00                000 0112246889999999999887      8899


Q ss_pred             HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      +++++..+..+. ..+.+..+..++.++..+|++++|....
T Consensus       715 ~~al~~~~~~g~-~~~~a~~~~~la~a~~~~G~~~~A~~~L  754 (903)
T PRK04841        715 EELNENARSLRL-MSDLNRNLILLNQLYWQQGRKSEAQRVL  754 (903)
T ss_pred             HHHHHHHHHhCc-hHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999998765443 2345566778999999999999887754

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.58  E-value=6.8e-13  Score=148.31  Aligned_cols=279  Identities=11%  Similarity=-0.037  Sum_probs=179.9

Q ss_pred             HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------
Q 013549           65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF-------  137 (441)
Q Consensus        65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i-------  137 (441)
                      ...+|.++.    ..|++.+|+..|++++.+.     |++   ...+..++.++...|+.++|+..++++...       
T Consensus       119 ~~~la~~l~----~~g~~~~Al~~l~~al~~~-----P~~---~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l  186 (765)
T PRK10049        119 LLALAYVYK----RAGRHWDELRAMTQALPRA-----PQT---QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDL  186 (765)
T ss_pred             HHHHHHHHH----HCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHH
Confidence            556677762    3578888888888888743     333   344456677777777777777666632210       


Q ss_pred             --------------------------------hhhhhh-------hh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 013549          138 --------------------------------KNSILG-------VR---VAAMEALAGLYLQLGQDDTSSVVADKCLQL  175 (441)
Q Consensus       138 --------------------------------~~~~lg-------~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i  175 (441)
                                                      .+..+.       ..   ..+.....+.+..+|++++|...++++++.
T Consensus       187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~  266 (765)
T PRK10049        187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE  266 (765)
T ss_pred             HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence                                            000000       00   000001122334667777777777665422


Q ss_pred             HHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCc----hHHHHHHHHHHHHccChHHHHHHHHH
Q 013549          176 CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCT----GSAALSYGEYLHATRNFLLAKKFYQK  251 (441)
Q Consensus       176 ~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~----~~~a~~~a~~~~~qG~y~eA~~ly~r  251 (441)
                          .+..+       ..+....+.+++.+|++++|+.+|++++...+..    ......++.++..+|++++|..++++
T Consensus       267 ----~~~~P-------~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~  335 (765)
T PRK10049        267 ----GQIIP-------PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH  335 (765)
T ss_pred             ----CCCCC-------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence                11001       1122234778889999999999999988743322    23445566677899999999999999


Q ss_pred             HHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 013549          252 VIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM  331 (441)
Q Consensus       252 AL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l  331 (441)
                      +++......     ..++....+|+.........+|.++..+|++++|++++++++..        +|.-...+.++|.+
T Consensus       336 ~~~~~P~~~-----~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l  402 (765)
T PRK10049        336 TINNSPPFL-----RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASV  402 (765)
T ss_pred             HhhcCCceE-----eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            887621000     01111112233333456679999999999999999999999876        35555688999999


Q ss_pred             HHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          332 FRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       332 y~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      |..+|++++|      +..+++++++.    |+.+.   ..-.++.+++..|+|++|+...
T Consensus       403 ~~~~g~~~~A------~~~l~~al~l~----Pd~~~---l~~~~a~~al~~~~~~~A~~~~  450 (765)
T PRK10049        403 LQARGWPRAA------ENELKKAEVLE----PRNIN---LEVEQAWTALDLQEWRQMDVLT  450 (765)
T ss_pred             HHhcCCHHHH------HHHHHHHHhhC----CCChH---HHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999887      89999998874    44443   3345777888999999988765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.55  E-value=6.3e-12  Score=142.22  Aligned_cols=277  Identities=17%  Similarity=0.076  Sum_probs=199.3

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|.+.+|+.++..+         ++.+..+..+...+..+..+|++..+...++.. .....  ..........+.++..
T Consensus       354 ~g~~~~Al~~a~~a---------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~~--~~~~~l~~~~a~~~~~  421 (903)
T PRK04841        354 QGFPSEAIHHALAA---------GDAQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEVL--LENPRLVLLQAWLAQS  421 (903)
T ss_pred             CCCHHHHHHHHHHC---------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHHH--hcCcchHHHHHHHHHH
Confidence            46666776655443         355678888889999999999999877776543 11100  0001122345666778


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--Cc---hHHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG--CT---GSAALSYG  233 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~--~~---~~~a~~~a  233 (441)
                      .|+++++..+++.+.+........   ...........+.+.++..+|+|++|+.++++++...+  ..   ..+...++
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg  498 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIE---LDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG  498 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcc---cchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence            899999998888876554332200   00111122234467777899999999999999987211  11   12345678


Q ss_pred             HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      .++..+|++++|..++++++++..+...              .+..+.+++++|.++..+|++++|+.++++++.+.++.
T Consensus       499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~--------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  564 (903)
T PRK04841        499 EVHHCKGELARALAMMQQTEQMARQHDV--------------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ  564 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhhcc--------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999998542111              11234567899999999999999999999999999998


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      .++.+|.....+.++|.++..+|++++|      +..+++++++.+..+  .......+.+++.++..+|++++|....
T Consensus       565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A------~~~~~~al~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~l  635 (903)
T PRK04841        565 HLEQLPMHEFLLRIRAQLLWEWARLDEA------EQCARKGLEVLSNYQ--PQQQLQCLAMLAKISLARGDLDNARRYL  635 (903)
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHHHH------HHHHHHhHHhhhccC--chHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888887777888999999999999987      899999999986433  2233456667899999999999997654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.54  E-value=2.6e-13  Score=136.62  Aligned_cols=296  Identities=19%  Similarity=0.121  Sum_probs=219.4

Q ss_pred             HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh
Q 013549           65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRG-ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG  143 (441)
Q Consensus        65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a-~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg  143 (441)
                      ...+|+-- ....-.|+|...+..|+.|+.     .|.++..+. ..|..||+.|+-.++|.+|+++...-+.+.+. +|
T Consensus        17 CleLalEG-ERLck~gdcraGv~ff~aA~q-----vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-lg   89 (639)
T KOG1130|consen   17 CLELALEG-ERLCKMGDCRAGVDFFKAALQ-----VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-LG   89 (639)
T ss_pred             HHHHHHHH-HHHHhccchhhhHHHHHHHHH-----hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-hc
Confidence            44555442 222346899999999999997     556665554 56889999999999999999999888877765 45


Q ss_pred             hh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC-------------
Q 013549          144 VR---VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN-------------  207 (441)
Q Consensus       144 ~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~-------------  207 (441)
                      ..   +.+-.||++.+.-+|.+++|...+.+-|++.+..+.      .....|+...+|.+|...|+             
T Consensus        90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgD------rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f  163 (639)
T KOG1130|consen   90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGD------RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAF  163 (639)
T ss_pred             chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhH------HHhhhHHHhhhhhhhhhcccccCCCChhhcccc
Confidence            53   346678999999999999999999999999877763      34556666677888887665             


Q ss_pred             -------HHHHHHHHHhhhh------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          208 -------LESAESFFKGLQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       208 -------y~eAe~l~~~aL~------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                             ++.|.++|+.-|.      .....+.+.-++|+.|+..|+|++|+..++.=|.|.++   |++...       
T Consensus       164 ~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---fGDrAa-------  233 (639)
T KOG1130|consen  164 NAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---FGDRAA-------  233 (639)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---hhhHHH-------
Confidence                   3446666666555      11122344457888999999999999999999999543   212110       


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHH
Q 013549          275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA  354 (441)
Q Consensus       275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rA  354 (441)
                          .-.+..|||+.|.-.|+|+.|.++|+++|.+..++ |.. ..-+-+...||..|.-...+++|      ..+++|=
T Consensus       234 ----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r-~vEAQscYSLgNtytll~e~~kA------I~Yh~rH  301 (639)
T KOG1130|consen  234 ----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNR-TVEAQSCYSLGNTYTLLKEVQKA------ITYHQRH  301 (639)
T ss_pred             ----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cch-hHHHHHHHHhhhHHHHHHHHHHH------HHHHHHH
Confidence                12367899999999999999999999999998774 433 23456677899999988888776      8999999


Q ss_pred             HHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchh
Q 013549          355 LEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK  396 (441)
Q Consensus       355 L~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~  396 (441)
                      |+|-.... |--.-+.....++..+-+-|...+|+..-+.-.
T Consensus       302 LaIAqeL~-DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  302 LAIAQELE-DRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHHHH-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99976533 222234566677888888899999888754433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.53  E-value=4.7e-13  Score=134.72  Aligned_cols=272  Identities=19%  Similarity=0.165  Sum_probs=197.0

Q ss_pred             CCCchHHHHHHHH-HHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           55 GLNSNPVVLQMIN-YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        55 g~~h~~~a~~m~n-~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      |++--.+...+-. ++..|  |  ..++|.+|+.+...-|......+  +...-|.+..|||+++.-.|.|+||+-+.+|
T Consensus        47 GTeDl~tLSAIYsQLGNAy--f--yL~DY~kAl~yH~hDltlar~lg--dklGEAKssgNLGNtlKv~G~fdeA~~cc~r  120 (639)
T KOG1130|consen   47 GTEDLSTLSAIYSQLGNAY--F--YLKDYEKALKYHTHDLTLARLLG--DKLGEAKSSGNLGNTLKVKGAFDEALTCCFR  120 (639)
T ss_pred             cchHHHHHHHHHHHhcchh--h--hHhhHHHHHhhhhhhHHHHHHhc--chhccccccccccchhhhhcccchHHHHHHH
Confidence            6665555544433 66665  3  35789999999888877655443  5567788999999999999999999999999


Q ss_pred             HHHhhhhhhhhhH---HHHHHHHHHHHhcCCc--------------------chhHHHHHHHHHHHHhcCCCcchhhhhh
Q 013549          134 VENFKNSILGVRV---AAMEALAGLYLQLGQD--------------------DTSSVVADKCLQLCEKHKPENYKTYGAV  190 (441)
Q Consensus       134 al~i~~~~lg~~~---~al~~La~l~~~~G~~--------------------~~A~~l~~~~L~i~~~~~~~~~~~~~~l  190 (441)
                      -|++.++ +|+++   .+++||+++|-..|+.                    ..|..+|..-|++.++.+.      ...
T Consensus       121 hLd~are-LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD------r~a  193 (639)
T KOG1130|consen  121 HLDFARE-LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD------RLA  193 (639)
T ss_pred             HhHHHHH-HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh------HHh
Confidence            9999988 78875   4899999999877753                    2233444444444444331      111


Q ss_pred             HhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----ccC-CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCC
Q 013549          191 NSRANAVKGLVELAHGNLESAESFFKGLQE-----EEG-CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD  264 (441)
Q Consensus       191 ~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~~~-~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~  264 (441)
                      ..|+...+|..|+-.|+|++|+.+.+.-|.     +.. ..-.+..|+|+.+.-.|+|+.|.++|++++.+..+.+.   
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---  270 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---  270 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---
Confidence            223333346666779999999999988777     111 11234467888999999999999999999988654332   


Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549          265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL  344 (441)
Q Consensus       265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~  344 (441)
                                 ..+...+-+.||++|.-..+|.+|++++.|=|.|..+.-  +-..-+.++..||..|...|..++|  +
T Consensus       271 -----------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~RacwSLgna~~alg~h~kA--l  335 (639)
T KOG1130|consen  271 -----------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACWSLGNAFNALGEHRKA--L  335 (639)
T ss_pred             -----------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhhhhHHHH--H
Confidence                       223456678999999999999999999999999998762  1223467888999999999999998  3


Q ss_pred             HHHHHHHHHHHHH
Q 013549          345 LIQEGLYRRALEF  357 (441)
Q Consensus       345 ~~Ae~ly~rAL~i  357 (441)
                      ..||...+-++++
T Consensus       336 ~fae~hl~~s~ev  348 (639)
T KOG1130|consen  336 YFAELHLRSSLEV  348 (639)
T ss_pred             HHHHHHHHHHHHh
Confidence            3455555544444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.52  E-value=6.1e-14  Score=111.37  Aligned_cols=74  Identities=22%  Similarity=0.364  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      ++.+++++|.+|..+|+|++|+++|++|+++ .+.+|++||.++.+++|||.+|..+|++++|      +.+|++|++|+
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A------~~~~~~al~i~   76 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEA------LEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhh
Confidence            4557899999999999999999999999999 8899999999999999999999999999987      99999999998


Q ss_pred             h
Q 013549          359 K  359 (441)
Q Consensus       359 ~  359 (441)
                      +
T Consensus        77 ~   77 (78)
T PF13424_consen   77 E   77 (78)
T ss_dssp             H
T ss_pred             c
Confidence            6

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.50  E-value=5.3e-12  Score=125.82  Aligned_cols=227  Identities=16%  Similarity=0.122  Sum_probs=163.8

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      +....++.-+.|+|....    -+.+..+..+.++|.+|...|++++|+..|++++.+.+..    ..++++++.++..+
T Consensus        40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~  111 (296)
T PRK11189         40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQA  111 (296)
T ss_pred             hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHC
Confidence            456788888889886431    2345668999999999999999999999999999887653    34789999999999


Q ss_pred             CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549          160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT  239 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q  239 (441)
                      |++++|...+++++++.    |..        ..+....|.++..+|+|++|...|++++...+..+... .+..+....
T Consensus       112 g~~~~A~~~~~~Al~l~----P~~--------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~  178 (296)
T PRK11189        112 GNFDAAYEAFDSVLELD----PTY--------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESK  178 (296)
T ss_pred             CCHHHHHHHHHHHHHhC----CCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHcc
Confidence            99999999999997543    111        11223468888899999999999999999655444211 122345567


Q ss_pred             cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549          240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP  319 (441)
Q Consensus       240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP  319 (441)
                      +++++|...+++++...    .   ++.                ...+.++..+|+++++ ..++++++-.++.. .-.|
T Consensus       179 ~~~~~A~~~l~~~~~~~----~---~~~----------------~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~  233 (296)
T PRK11189        179 LDPKQAKENLKQRYEKL----D---KEQ----------------WGWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAE  233 (296)
T ss_pred             CCHHHHHHHHHHHHhhC----C---ccc----------------cHHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHH
Confidence            89999999998876441    1   111                1235566667888765 34455543321110 0024


Q ss_pred             hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          320 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       320 ~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      ....++.+||.+|..+|++++|      ...|++|+++-
T Consensus       234 ~~~ea~~~Lg~~~~~~g~~~~A------~~~~~~Al~~~  266 (296)
T PRK11189        234 RLCETYFYLAKYYLSLGDLDEA------AALFKLALANN  266 (296)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC
Confidence            4567899999999999999987      89999998763

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=2.7e-13  Score=143.22  Aligned_cols=238  Identities=16%  Similarity=0.123  Sum_probs=177.5

Q ss_pred             CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCC--------------------------CCchhHHH
Q 013549           56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ--------------------------LAESWRGI  109 (441)
Q Consensus        56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g--------------------------~~h~~~a~  109 (441)
                      ..|+.+--.+.++|..|  |  ..+.|++|+.+|+.+-.+..-.+.                          +..|.--.
T Consensus       347 ~h~~nt~wvl~q~Gray--F--El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPe  422 (638)
T KOG1126|consen  347 SHHYNTGWVLSQLGRAY--F--ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPE  422 (638)
T ss_pred             HhcCCchHHHHHHHHHH--H--HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcH
Confidence            35667777778888888  5  378999999999988766544331                          12233334


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549          110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA  189 (441)
Q Consensus       110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~  189 (441)
                      +...+|++|.-|++++.|++.|+||+.+.+.-    +.++--++-=+....+++.|...|+++|.+.    +.||     
T Consensus       423 sWca~GNcfSLQkdh~~Aik~f~RAiQldp~f----aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~----~rhY-----  489 (638)
T KOG1126|consen  423 SWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF----AYAYTLLGHESIATEEFDKAMKSFRKALGVD----PRHY-----  489 (638)
T ss_pred             HHHHhcchhhhhhHHHHHHHHHHHhhccCCcc----chhhhhcCChhhhhHHHHhHHHHHHhhhcCC----chhh-----
Confidence            56778899999999999999999998877632    1111111212333345666666666665332    2222     


Q ss_pred             hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 013549          190 VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG  269 (441)
Q Consensus       190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg  269 (441)
                         ++..-.|++|+.|++|+.|+-+|++|+...+........+|.+++..|+.++|..+|++|+.+   ...    +.  
T Consensus       490 ---nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~k----n~--  557 (638)
T KOG1126|consen  490 ---NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPK----NP--  557 (638)
T ss_pred             ---HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCC----Cc--
Confidence               344457999999999999999999999987777667778899999999999999999999988   111    11  


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          270 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       270 ~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                 .+...-|.++...++|+||...+++--++.        |+=+.++.-||.+|.+.|+.+.|
T Consensus       558 -----------l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  558 -----------LCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             -----------hhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHccchHH
Confidence                       246789999999999999999998866553        78889999999999999998876

>PRK12370 invasion protein regulator; Provisional

Probab=99.49  E-value=4.9e-12  Score=136.54  Aligned_cols=210  Identities=12%  Similarity=0.044  Sum_probs=160.1

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..+++++|+..+++++++.     |+   -+.++..+|.++..+|+|++|+..|++++.+.+...    .++..++.++.
T Consensus       316 ~~~~~~~A~~~~~~Al~ld-----P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~  383 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELD-----HN---NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA----DIKYYYGWNLF  383 (553)
T ss_pred             cchHHHHHHHHHHHHHhcC-----CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Confidence            3467999999999999753     44   456788999999999999999999999999887642    36788899999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCchHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE-EGCTGSAALSYGEYL  236 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~  236 (441)
                      .+|++++|..++++++++.    |...   ..     ....+.+++.+|+|++|+..+++++.. .+..+....++|.+|
T Consensus       384 ~~G~~~eAi~~~~~Al~l~----P~~~---~~-----~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l  451 (553)
T PRK12370        384 MAGQLEEALQTINECLKLD----PTRA---AA-----GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL  451 (553)
T ss_pred             HCCCHHHHHHHHHHHHhcC----CCCh---hh-----HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence            9999999999999987553    2110   01     112233456799999999999999984 345566667889999


Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      ..+|++++|+..+++.+...                  |+  .....+.|+.+|..+|  ++|...+++.++...  -++
T Consensus       452 ~~~G~~~eA~~~~~~~~~~~------------------~~--~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~--~~~  507 (553)
T PRK12370        452 SLKGKHELARKLTKEISTQE------------------IT--GLIAVNLLYAEYCQNS--ERALPTIREFLESEQ--RID  507 (553)
T ss_pred             HhCCCHHHHHHHHHHhhhcc------------------ch--hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh--Hhh
Confidence            99999999999998865441                  11  1345788999999999  488888888666555  344


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhh
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      .+|..      ++.+|.-+|+-+.+
T Consensus       508 ~~~~~------~~~~~~~~g~~~~~  526 (553)
T PRK12370        508 NNPGL------LPLVLVAHGEAIAE  526 (553)
T ss_pred             cCchH------HHHHHHHHhhhHHH
Confidence            45554      78899999987664

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.46  E-value=1.8e-11  Score=133.69  Aligned_cols=333  Identities=17%  Similarity=0.149  Sum_probs=203.9

Q ss_pred             cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      ...++|+.+..++-=|...  +  .-++|..|+.+|.++|.|.+..  +..     ....+|..++..|+-+.|+--++|
T Consensus       156 Vl~~sp~Nil~LlGkA~i~--y--nkkdY~~al~yyk~al~inp~~--~aD-----~rIgig~Cf~kl~~~~~a~~a~~r  224 (1018)
T KOG2002|consen  156 VLKQSPDNILALLGKARIA--Y--NKKDYRGALKYYKKALRINPAC--KAD-----VRIGIGHCFWKLGMSEKALLAFER  224 (1018)
T ss_pred             HHhhCCcchHHHHHHHHHH--h--ccccHHHHHHHHHHHHhcCccc--CCC-----ccchhhhHHHhccchhhHHHHHHH
Confidence            4677888888888877775  2  3478999999999999887543  222     345677889999999999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549          134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES  213 (441)
Q Consensus       134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~  213 (441)
                      ++.+.+..+    .++-.|+.+... .+..   .-+++.+.++.+...+...+..     +.+++...+...|+|..+..
T Consensus       225 alqLdp~~v----~alv~L~~~~l~-~~d~---~s~~~~~~ll~~ay~~n~~nP~-----~l~~LAn~fyfK~dy~~v~~  291 (1018)
T KOG2002|consen  225 ALQLDPTCV----SALVALGEVDLN-FNDS---DSYKKGVQLLQRAYKENNENPV-----ALNHLANHFYFKKDYERVWH  291 (1018)
T ss_pred             HHhcChhhH----HHHHHHHHHHHH-ccch---HHHHHHHHHHHHHHhhcCCCcH-----HHHHHHHHHhhcccHHHHHH
Confidence            998887543    233334443322 1111   2234455444444322222112     22233444557778888777


Q ss_pred             HHHhhhh-ccCCc--hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549          214 FFKGLQE-EEGCT--GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE  290 (441)
Q Consensus       214 l~~~aL~-~~~~~--~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly  290 (441)
                      +...++. +...+  ....+.+|..||.||+|++|..+|.+++..   ...   +..             -++..||+.|
T Consensus       292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d---~~~-------------l~~~GlgQm~  352 (1018)
T KOG2002|consen  292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DND---NFV-------------LPLVGLGQMY  352 (1018)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCC---Ccc-------------ccccchhHHH
Confidence            7777777 21111  223345577777888888888888777766   111   111             1246777777


Q ss_pred             HHcCCHHHHHHHHHHHHHHHH------HhhCCCC------------------------chHHHHHHHHHHHHHHhhchhh
Q 013549          291 AHMGNFGDAEEILTRTLTKTE------ELFGSHH------------------------PKVGVVLTCLALMFRNKAMQEH  340 (441)
Q Consensus       291 ~~qG~y~eAe~l~~rAL~i~e------~~lG~~H------------------------P~va~~l~nLa~ly~~qG~~ee  340 (441)
                      ..+|++.+|...|++.+....      +++|.-|                        |.-....-+||.+|..+.-+  
T Consensus       353 i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~--  430 (1018)
T KOG2002|consen  353 IKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW--  430 (1018)
T ss_pred             HHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH--
Confidence            777777777777777776542      1222222                        22222344455555443322  


Q ss_pred             hhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchhhHH-------H-------HHHHHH
Q 013549          341 SSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEG-------E-------RMKRWA  406 (441)
Q Consensus       341 A~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~~ea-------e-------~~~~~a  406 (441)
                           .+...|.+|++|+...+-.-|  ...+||+|..+...|.+.+|+.-+....+.+       |       .-++.|
T Consensus       431 -----~sL~~~~~A~d~L~~~~~~ip--~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla  503 (1018)
T KOG2002|consen  431 -----ASLDAYGNALDILESKGKQIP--PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA  503 (1018)
T ss_pred             -----HHHHHHHHHHHHHHHcCCCCC--HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence                 236788999988854332223  3688999999998899888887664333331       1       234566


Q ss_pred             HHHHhccChhHHHHhcccCCCCCCceeeeccc
Q 013549          407 EAAWRNRRVSLAEALNFSEPSNKPLVIDARTS  438 (441)
Q Consensus       407 ~~~~~~~r~~~~~~l~~~~~~~~~~~~~~r~~  438 (441)
                      .-.-...+.++|+....+=..-+|.-||+|+|
T Consensus       504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylR  535 (1018)
T KOG2002|consen  504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLR  535 (1018)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHH
Confidence            66666667777777776555556677888776

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.46  E-value=1.4e-12  Score=123.22  Aligned_cols=158  Identities=19%  Similarity=0.170  Sum_probs=132.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      +|+-|+.+|++..|...+++||...+....+...+|.+|+.+|..+.|.+.|++||.+.   .+     . |        
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~-----~-G--------  103 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PN-----N-G--------  103 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CC-----c-c--------
Confidence            58889999999999999999999888888888999999999999999999999999982   11     1 1        


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                         ..+||.|.-++.||+|++|...|++|+.      -|.-|....++.|+|..-.++|+.+.|      +..|+|+|++
T Consensus       104 ---dVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A------~~~l~raL~~  168 (250)
T COG3063         104 ---DVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQA------EEYLKRALEL  168 (250)
T ss_pred             ---chhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhH------HHHHHHHHHh
Confidence               3579999999999999999999999986      577888999999999999999999887      9999999998


Q ss_pred             hhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          358 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       358 ~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                      .-    +-|.+...   ++-.....|+|.+|-...+.
T Consensus       169 dp----~~~~~~l~---~a~~~~~~~~y~~Ar~~~~~  198 (250)
T COG3063         169 DP----QFPPALLE---LARLHYKAGDYAPARLYLER  198 (250)
T ss_pred             Cc----CCChHHHH---HHHHHHhcccchHHHHHHHH
Confidence            52    33332222   33455677899999776543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.45  E-value=6.2e-13  Score=130.69  Aligned_cols=257  Identities=21%  Similarity=0.188  Sum_probs=101.2

Q ss_pred             HHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhH
Q 013549           67 NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV  146 (441)
Q Consensus        67 n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~  146 (441)
                      .+|.++++    .|++++|+.++.+.....      ..|+-...+..+|.+.+..|++++|+..|++.+.+.+...    
T Consensus        13 ~~A~~~~~----~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~----   78 (280)
T PF13429_consen   13 RLARLLYQ----RGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP----   78 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccc----cccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc----
Confidence            56888754    589999999997766422      0122235566789999999999999999999987655432    


Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc--CC
Q 013549          147 AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE--GC  224 (441)
Q Consensus       147 ~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~--~~  224 (441)
                      ..+.+++.+ ...+++.+|..++.+..+   +...     ...+.     ...-++...|++++++.+++++....  +.
T Consensus        79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~---~~~~-----~~~l~-----~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~  144 (280)
T PF13429_consen   79 QDYERLIQL-LQDGDPEEALKLAEKAYE---RDGD-----PRYLL-----SALQLYYRLGDYDEAEELLEKLEELPAAPD  144 (280)
T ss_dssp             -----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred             ccccccccc-cccccccccccccccccc---cccc-----cchhh-----HHHHHHHHHhHHHHHHHHHHHHHhccCCCC
Confidence            245667777 577888888777665532   1111     01111     11223468999999999999977622  33


Q ss_pred             chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT  304 (441)
Q Consensus       225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~  304 (441)
                      .......+|.++..+|++++|+..|++||+..                  |+.  ....+.|+.++..+|+++++.+.++
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------P~~--~~~~~~l~~~li~~~~~~~~~~~l~  204 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELD------------------PDD--PDARNALAWLLIDMGDYDEAREALK  204 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------------------TT---HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCC--HHHHHHHHHHHHHCCChHHHHHHHH
Confidence            34455678999999999999999999999982                  111  2346789999999999999877777


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhcc
Q 013549          305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG  384 (441)
Q Consensus       305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~  384 (441)
                      +.....     +..|.+   +..+|.+|...|++++|      ...|+++++..    |++|.   .+.+++.++...|+
T Consensus       205 ~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~A------l~~~~~~~~~~----p~d~~---~~~~~a~~l~~~g~  263 (280)
T PF13429_consen  205 RLLKAA-----PDDPDL---WDALAAAYLQLGRYEEA------LEYLEKALKLN----PDDPL---WLLAYADALEQAGR  263 (280)
T ss_dssp             HHHHH------HTSCCH---CHHHHHHHHHHT-HHHH------HHHHHHHHHHS----TT-HH---HHHHHHHHHT----
T ss_pred             HHHHHC-----cCHHHH---HHHHHHHhccccccccc------ccccccccccc----ccccc---cccccccccccccc
Confidence            665554     566664   55678999999999987      88999987653    34443   44567778878888


Q ss_pred             HHHHHHHh
Q 013549          385 YAEALSVQ  392 (441)
Q Consensus       385 yaeal~~~  392 (441)
                      +++|..+.
T Consensus       264 ~~~A~~~~  271 (280)
T PF13429_consen  264 KDEALRLR  271 (280)
T ss_dssp             --------
T ss_pred             cccccccc
Confidence            88777664

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.44  E-value=3.4e-13  Score=107.07  Aligned_cols=77  Identities=18%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             chHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 013549           58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF  137 (441)
Q Consensus        58 h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i  137 (441)
                      ||+++..+.|+|..|.    .+|+|++|+.+|++++.+ .+..|++||.++.++++||.+|..+|+|++|++++++++++
T Consensus         1 H~~~a~~~~~la~~~~----~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    1 HPDTANAYNNLARVYR----ELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             -HHHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999999999999994    378999999999999999 77789999999999999999999999999999999999988


Q ss_pred             hh
Q 013549          138 KN  139 (441)
Q Consensus       138 ~~  139 (441)
                      .+
T Consensus        76 ~~   77 (78)
T PF13424_consen   76 FE   77 (78)
T ss_dssp             HH
T ss_pred             hc
Confidence            75

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.42  E-value=2.6e-10  Score=114.88  Aligned_cols=309  Identities=11%  Similarity=-0.008  Sum_probs=189.6

Q ss_pred             hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549           59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~  138 (441)
                      |+-+.....+|..+.    ..|++.+|...+.++.......     ++........+.++..+|++++|++.+++++...
T Consensus         3 p~~~~a~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~   73 (355)
T cd05804           3 PDFALGHAAAALLLL----LGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDDY   73 (355)
T ss_pred             CccHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            555666777777762    3577889888998888766433     2344456678889999999999999999998876


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549          139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL  218 (441)
Q Consensus       139 ~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a  218 (441)
                      +...    .++.. +..+..+|.+..+...+.+++..   ..+.++     .......+.+.++..+|+|++|+..|+++
T Consensus        74 P~~~----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-----~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  140 (355)
T cd05804          74 PRDL----LALKL-HLGAFGLGDFSGMRDHVARVLPL---WAPENP-----DYWYLLGMLAFGLEEAGQYDRAEEAARRA  140 (355)
T ss_pred             CCcH----HHHHH-hHHHHHhcccccCchhHHHHHhc---cCcCCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5432    12222 22334445544444444444433   111111     11223345677888999999999999999


Q ss_pred             hhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549          219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD  298 (441)
Q Consensus       219 L~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e  298 (441)
                      +...+....+...++.++..+|++++|+.++++++...   ..   ++.          ........+|.+|..+|++++
T Consensus       141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~---~~---~~~----------~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW---DC---SSM----------LRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc---CC---Ccc----------hhHHHHHHHHHHHHHCCCHHH
Confidence            99666666777889999999999999999999999873   11   000          122345689999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCchHHHHHH--HHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHH
Q 013549          299 AEEILTRTLTKTEELFGSHHPKVGVVLT--CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTD  376 (441)
Q Consensus       299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~--nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~  376 (441)
                      |+.+|++++...     +..+.....++  .+...+..+|..+.+       .-.+..........+++......+ +.+
T Consensus       205 A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~-------~~w~~~~~~~~~~~~~~~~~~~~~-~~a  271 (355)
T cd05804         205 ALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVG-------DRWEDLADYAAWHFPDHGLAFNDL-HAA  271 (355)
T ss_pred             HHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChH-------HHHHHHHHHHHhhcCcccchHHHH-HHH
Confidence            999999994421     22233332212  223333444432221       111222222211112232223333 477


Q ss_pred             HHHHHhccHHHHHHHhhchhhHHH-------------HHHHHHHHHHhccChhHH
Q 013549          377 IVALARGGYAEALSVQQNRKDEGE-------------RMKRWAEAAWRNRRVSLA  418 (441)
Q Consensus       377 ~~~~~~g~yaeal~~~~~r~~eae-------------~~~~~a~~~~~~~r~~~~  418 (441)
                      .++..+|+.++|...-..-...++             ...-.|...|+.+.+..+
T Consensus       272 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A  326 (355)
T cd05804         272 LALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA  326 (355)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence            778889999888775422222222             222367777777765444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.41  E-value=2.2e-11  Score=121.48  Aligned_cols=226  Identities=13%  Similarity=0.014  Sum_probs=157.7

Q ss_pred             hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549           59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~  138 (441)
                      +..+....+.|..+.    ..|++++|+..|++++.+.        |....+++++|.+|..+|+|++|++.|++++.+.
T Consensus        61 ~~~a~~~~~~g~~~~----~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~  128 (296)
T PRK11189         61 EERAQLHYERGVLYD----SLGLRALARNDFSQALALR--------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD  128 (296)
T ss_pred             HhhHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            344666778888873    4689999999999999853        4446789999999999999999999999999887


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549          139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL  218 (441)
Q Consensus       139 ~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a  218 (441)
                      +...    .++.+++.++..+|++++|...+++++.+.    |..+       .+  .+........+++++|...|+++
T Consensus       129 P~~~----~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~-------~~--~~~~~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        129 PTYN----YAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDP-------YR--ALWLYLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCH-------HH--HHHHHHHHccCCHHHHHHHHHHH
Confidence            6642    367889999999999999999999887432    2111       01  11111223578999999999887


Q ss_pred             hhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549          219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD  298 (441)
Q Consensus       219 L~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e  298 (441)
                      +...+.. ..  .++.++...|++.++. .++.+++..   ..   ...++     |.  ...++.+||.+|..+|++++
T Consensus       192 ~~~~~~~-~~--~~~~~~~~lg~~~~~~-~~~~~~~~~---~~---~~~l~-----~~--~~ea~~~Lg~~~~~~g~~~~  254 (296)
T PRK11189        192 YEKLDKE-QW--GWNIVEFYLGKISEET-LMERLKAGA---TD---NTELA-----ER--LCETYFYLAKYYLSLGDLDE  254 (296)
T ss_pred             HhhCCcc-cc--HHHHHHHHccCCCHHH-HHHHHHhcC---CC---cHHHH-----HH--HHHHHHHHHHHHHHCCCHHH
Confidence            7532111 11  1344555678887763 555555431   10   11111     11  23468999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH
Q 013549          299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN  334 (441)
Q Consensus       299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~  334 (441)
                      |+.+|++|+++.    -++.+.....+..|..+...
T Consensus       255 A~~~~~~Al~~~----~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        255 AAALFKLALANN----VYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHhC----CchHHHHHHHHHHHHHHHhh
Confidence            999999999653    23556666666666666443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.40  E-value=2.1e-12  Score=126.94  Aligned_cols=223  Identities=18%  Similarity=0.176  Sum_probs=100.7

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      +.+++++|+..|++.+.+.     +   .....+.+++.+ ...|+|.+|+++++++..-...     ...+...+.++.
T Consensus        56 ~~~~~~~A~~ay~~l~~~~-----~---~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-----~~~l~~~l~~~~  121 (280)
T PF13429_consen   56 SLGDYDEAIEAYEKLLASD-----K---ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-----PRYLLSALQLYY  121 (280)
T ss_dssp             ----------------------------------------------------------------------------H-HH
T ss_pred             ccccccccccccccccccc-----c---cccccccccccc-cccccccccccccccccccccc-----cchhhHHHHHHH
Confidence            5688999999999998643     2   244457778887 7999999999999887543322     124455667788


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                      ..|+++++..+++++.....  .+   .+     .......+.++..+|++++|+.+|++++...|....+...++.++.
T Consensus       122 ~~~~~~~~~~~l~~~~~~~~--~~---~~-----~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li  191 (280)
T PF13429_consen  122 RLGDYDEAEELLEKLEELPA--AP---DS-----ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI  191 (280)
T ss_dssp             HTT-HHHHHHHHHHHHH-T--------T------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred             HHhHHHHHHHHHHHHHhccC--CC---CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            88999888877776542110  11   00     1122245677789999999999999999987777788888999999


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      .+|++++|.++.++.....   ..   .+.              ....+|.+|..+|++++|.++|++++.        .
T Consensus       192 ~~~~~~~~~~~l~~~~~~~---~~---~~~--------------~~~~la~~~~~lg~~~~Al~~~~~~~~--------~  243 (280)
T PF13429_consen  192 DMGDYDEAREALKRLLKAA---PD---DPD--------------LWDALAAAYLQLGRYEEALEYLEKALK--------L  243 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHH----HT---SCC--------------HCHHHHHHHHHHT-HHHHHHHHHHHHH--------H
T ss_pred             HCCChHHHHHHHHHHHHHC---cC---HHH--------------HHHHHHHHhcccccccccccccccccc--------c
Confidence            9999999888888876652   11   111              236899999999999999999999884        3


Q ss_pred             CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +|.=..++.++|.++...|++++|      ..++++++.-+
T Consensus       244 ~p~d~~~~~~~a~~l~~~g~~~~A------~~~~~~~~~~l  278 (280)
T PF13429_consen  244 NPDDPLWLLAYADALEQAGRKDEA------LRLRRQALRLL  278 (280)
T ss_dssp             STT-HHHHHHHHHHHT-------------------------
T ss_pred             cccccccccccccccccccccccc------ccccccccccc
Confidence            455556677888999999999987      88999988754

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.40  E-value=1.2e-11  Score=116.82  Aligned_cols=164  Identities=20%  Similarity=0.220  Sum_probs=132.1

Q ss_pred             CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549          102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP  181 (441)
Q Consensus       102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~  181 (441)
                      .++...+.+...||.-|..+|++..|...+++||.+.++.-                                       
T Consensus        29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~---------------------------------------   69 (250)
T COG3063          29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY---------------------------------------   69 (250)
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------------------------------
Confidence            46677889999999999999999999999999877766531                                       


Q ss_pred             CcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          182 ENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       182 ~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                                 .+......+|..+|+.+-|.+.|++|+...+..+++.+|||.+++.||+|++|...|++|++-      
T Consensus        70 -----------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------  132 (250)
T COG3063          70 -----------LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------  132 (250)
T ss_pred             -----------HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------
Confidence                       111234666778999999999999999988888899999999999999999999999999875      


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                          |..+      +  ...++-|+|.+-..+|+++.|+++|+|+|.+-        |....++-.++......|+|-.|
T Consensus       133 ----P~Y~------~--~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--------p~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         133 ----PAYG------E--PSDTLENLGLCALKAGQFDQAEEYLKRALELD--------PQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             ----CCCC------C--cchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--------cCCChHHHHHHHHHHhcccchHH
Confidence                1223      0  12467899999999999999999999999853        44445556667888888988776

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.40  E-value=1.5e-10  Score=126.63  Aligned_cols=254  Identities=15%  Similarity=0.187  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      ..+..++-|+..--.+..+ ..|+.|+.++.++..+.     +++|.   +++.|++-|+..|+|..+..+.+.++....
T Consensus       231 ~~v~alv~L~~~~l~~~d~-~s~~~~~~ll~~ay~~n-----~~nP~---~l~~LAn~fyfK~dy~~v~~la~~ai~~t~  301 (1018)
T KOG2002|consen  231 TCVSALVALGEVDLNFNDS-DSYKKGVQLLQRAYKEN-----NENPV---ALNHLANHFYFKKDYERVWHLAEHAIKNTE  301 (1018)
T ss_pred             hhHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHhhc-----CCCcH---HHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence            4455555554444334333 35666777776666654     34444   455666666666666666666666655442


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 013549          140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQ  219 (441)
Q Consensus       140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL  219 (441)
                      .. .+...+.+.++..|-.+|++++|-.+|..++......+        .+   ...-+|-.|+.+|++++|+.+|++++
T Consensus       302 ~~-~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~--------~l---~~~GlgQm~i~~~dle~s~~~fEkv~  369 (1018)
T KOG2002|consen  302 NK-SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF--------VL---PLVGLGQMYIKRGDLEESKFCFEKVL  369 (1018)
T ss_pred             hh-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc--------cc---cccchhHHHHHhchHHHHHHHHHHHH
Confidence            21 12233556666666666666666666666653322211        00   00013445556666666666666665


Q ss_pred             h--------------------------------------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          220 E--------------------------------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       220 ~--------------------------------------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      .                                      ..+....+.+.++.++ .+++.-.+...|.+|++|.+....
T Consensus       370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~-e~~d~~~sL~~~~~A~d~L~~~~~  448 (1018)
T KOG2002|consen  370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL-EQTDPWASLDAYGNALDILESKGK  448 (1018)
T ss_pred             HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHcCC
Confidence            5                                      2222223444455444 345555569999999999765433


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC-chH-HHHHHHHHHHHHHhhchh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH-PKV-GVVLTCLALMFRNKAMQE  339 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H-P~v-a~~l~nLa~ly~~qG~~e  339 (441)
                           .+.     |     -.+||+|.+++..|.|.+|..+|.+|+.+.....-++- -+| .+...|||.++...++++
T Consensus       449 -----~ip-----~-----E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~  513 (1018)
T KOG2002|consen  449 -----QIP-----P-----EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE  513 (1018)
T ss_pred             -----CCC-----H-----HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence                 222     2     24799999999999999999999999999665544333 233 456899999999999998


Q ss_pred             hhhhhHHHHHHHHHHHH
Q 013549          340 HSSALLIQEGLYRRALE  356 (441)
Q Consensus       340 eA~~~~~Ae~ly~rAL~  356 (441)
                      .|      +.+|...+.
T Consensus       514 ~A------~e~Yk~Ilk  524 (1018)
T KOG2002|consen  514 VA------EEMYKSILK  524 (1018)
T ss_pred             HH------HHHHHHHHH
Confidence            87      889987644

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=2.8e-11  Score=126.14  Aligned_cols=212  Identities=17%  Similarity=0.223  Sum_probs=169.3

Q ss_pred             CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC-
Q 013549          102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK-  180 (441)
Q Consensus       102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~-  180 (441)
                      ..+|+.+.+...+|..|...|++.+|...|-++..+.+. .|.   +|-..+..+-..|+.++|..-|.++-+++...+ 
T Consensus       306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl  381 (611)
T KOG1173|consen  306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL  381 (611)
T ss_pred             HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc
Confidence            568888999999999999999999999999999777655 443   666777777778888888888887776665544 


Q ss_pred             CCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549          181 PENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK  260 (441)
Q Consensus       181 ~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~  260 (441)
                      |       .+      ..|+=|...++++-|+.+|.+|++..|..+-+..-+|-+....+.|.+|..+|+.+|+......
T Consensus       382 P-------~L------Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~  448 (611)
T KOG1173|consen  382 P-------SL------YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL  448 (611)
T ss_pred             h-------HH------HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence            2       11      2577777799999999999999997777777777788888899999999999999996643222


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh
Q 013549          261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH  340 (441)
Q Consensus       261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee  340 (441)
                      .    ...   -      .-...+|||.+|+.+++|++|+..|++||..        -|.-+.++..+|.+|..+|+.+.
T Consensus       449 ~----e~~---~------w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~  507 (611)
T KOG1173|consen  449 N----EKI---F------WEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDK  507 (611)
T ss_pred             c----ccc---c------hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHH
Confidence            1    110   0      1124689999999999999999999999975        36677888899999999999988


Q ss_pred             hhhhHHHHHHHHHHHHH
Q 013549          341 SSALLIQEGLYRRALEF  357 (441)
Q Consensus       341 A~~~~~Ae~ly~rAL~i  357 (441)
                      |      ...|.+||.|
T Consensus       508 A------id~fhKaL~l  518 (611)
T KOG1173|consen  508 A------IDHFHKALAL  518 (611)
T ss_pred             H------HHHHHHHHhc
Confidence            7      7888888776

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.32  E-value=2.2e-09  Score=123.16  Aligned_cols=234  Identities=14%  Similarity=0.046  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG  188 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~  188 (441)
                      .+++.|-..|.+.|++++|+++|.+.....   +.++..+++.|...|.+.|+.++|..++++....-   .+..+    
T Consensus       508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~G---v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~gi~P----  577 (1060)
T PLN03218        508 HTFGALIDGCARAGQVAKAFGAYGIMRSKN---VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET---HPIDP----  577 (1060)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CCCCC----
Confidence            455555566666666666666665543221   12233455666666666666666665555443210   00000    


Q ss_pred             hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549          189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEE-EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT  267 (441)
Q Consensus       189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~  267 (441)
                      +.. ... ..-.+|...|++++|+.+|++.... -.....+...+...|...|++++|..+|++..+.     +      
T Consensus       578 D~v-Tyn-aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G------  644 (1060)
T PLN03218        578 DHI-TVG-ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G------  644 (1060)
T ss_pred             cHH-HHH-HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C------
Confidence            000 011 1223456788888888888887772 2333344455666677788888888888775432     1      


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 013549          268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ  347 (441)
Q Consensus       268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~A  347 (441)
                      +-     |+   ..+++.|-..|...|++++|.+++.+..+.       ..+....+++.|...|.++|++++|      
T Consensus       645 v~-----PD---~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA------  703 (1060)
T PLN03218        645 VK-----PD---EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKA------  703 (1060)
T ss_pred             CC-----CC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHH------
Confidence            01     22   234666777777777777777777765531       1222234677777777777777765      


Q ss_pred             HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          348 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       348 e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      +.+|++..+.    + -.|++ .+.+.+-..|...|++++|+.+.
T Consensus       704 ~~lf~eM~~~----g-~~Pdv-vtyN~LI~gy~k~G~~eeAlelf  742 (1060)
T PLN03218        704 LELYEDIKSI----K-LRPTV-STMNALITALCEGNQLPKALEVL  742 (1060)
T ss_pred             HHHHHHHHHc----C-CCCCH-HHHHHHHHHHHHCCCHHHHHHHH
Confidence            5566554321    1 12332 24455555566667777776654

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.29  E-value=1.4e-09  Score=124.94  Aligned_cols=258  Identities=10%  Similarity=0.013  Sum_probs=178.4

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|++++|+.+|++.....   .   .|+ ..+++.|-..|.+.|++++|.++|++....... +.++..+++.|...|..
T Consensus       520 ~G~~eeAl~lf~~M~~~G---v---~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k  591 (1060)
T PLN03218        520 AGQVAKAFGAYGIMRSKN---V---KPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACAN  591 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcC---C---CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHH
Confidence            478899999998887532   2   233 467999999999999999999999988653211 22344588889999999


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCchHHHHHHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE-EGCTGSAALSYGEYLH  237 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~~  237 (441)
                      .|+.++|..+++...+   .....      ..  ...+.....|...|++++|..+|.+.... ......+...+...|.
T Consensus       592 ~G~ldeA~elf~~M~e---~gi~p------~~--~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~  660 (1060)
T PLN03218        592 AGQVDRAKEVYQMIHE---YNIKG------TP--EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG  660 (1060)
T ss_pred             CCCHHHHHHHHHHHHH---cCCCC------Ch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            9999999998887642   11110      11  11122334466899999999999998873 2223344556677888


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      ..|++++|..++++.++.     +      +.     |   ...+++.|...|...|++++|+++|++....     | -
T Consensus       661 k~G~~eeA~~l~~eM~k~-----G------~~-----p---d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g-~  715 (1060)
T PLN03218        661 HAGDLDKAFEILQDARKQ-----G------IK-----L---GTVSYSSLMGACSNAKNWKKALELYEDIKSI-----K-L  715 (1060)
T ss_pred             hCCCHHHHHHHHHHHHHc-----C------CC-----C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-C
Confidence            999999999999987643     1      11     1   1346788999999999999999998875432     3 2


Q ss_pred             CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549          318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      .|++ .+++.|-..|.+.|++++|      ..++++..+.    + -.|+.. +++.+-..+...|++++|..++.
T Consensus       716 ~Pdv-vtyN~LI~gy~k~G~~eeA------lelf~eM~~~----G-i~Pd~~-Ty~sLL~a~~k~G~le~A~~l~~  778 (1060)
T PLN03218        716 RPTV-STMNALITALCEGNQLPKA------LEVLSEMKRL----G-LCPNTI-TYSILLVASERKDDADVGLDLLS  778 (1060)
T ss_pred             CCCH-HHHHHHHHHHHHCCCHHHH------HHHHHHHHHc----C-CCCCHH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence            3554 5689999999999998887      6777665322    1 123322 34444456677788888877653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.27  E-value=4.8e-10  Score=124.12  Aligned_cols=253  Identities=11%  Similarity=-0.000  Sum_probs=131.0

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      |++++|..+|++...          + ...+++.|...|...|++++|+++|++.....   +.++..+++.+...|...
T Consensus       273 g~~~~A~~vf~~m~~----------~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~pd~~t~~~ll~a~~~~  338 (697)
T PLN03081        273 GDIEDARCVFDGMPE----------K-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---VSIDQFTFSIMIRIFSRL  338 (697)
T ss_pred             CCHHHHHHHHHhCCC----------C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc
Confidence            567777777765431          1 23467777777777777777777777653321   222334556666666666


Q ss_pred             CCcchhHHHHHHHHHHHHhcCCCc---c-------------hhh---------hhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          160 GQDDTSSVVADKCLQLCEKHKPEN---Y-------------KTY---------GAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~~~---~-------------~~~---------~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      |+.+++..++...++.   ..+..   +             +++         .++.  ..+.....|...|++++|..+
T Consensus       339 g~~~~a~~i~~~m~~~---g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~--t~n~lI~~y~~~G~~~~A~~l  413 (697)
T PLN03081        339 ALLEHAKQAHAGLIRT---GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI--SWNALIAGYGNHGRGTKAVEM  413 (697)
T ss_pred             cchHHHHHHHHHHHHh---CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee--eHHHHHHHHHHcCCHHHHHHH
Confidence            6666666555444311   10000   0             000         0000  001122233455555555555


Q ss_pred             HHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549          215 FKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM  293 (441)
Q Consensus       215 ~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q  293 (441)
                      |++.+. +..+...+...+-..+...|++++|..+|+...+.    .+  ..         |   ...+++.+..+|...
T Consensus       414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~----~g--~~---------p---~~~~y~~li~~l~r~  475 (697)
T PLN03081        414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HR--IK---------P---RAMHYACMIELLGRE  475 (697)
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cC--CC---------C---CccchHhHHHHHHhc
Confidence            555554 22222223333444455556666666655554432    11  00         1   112355666777777


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549          294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD  373 (441)
Q Consensus       294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~  373 (441)
                      |++++|++++++.         +..|++ .+++.|...|...|+++.|      +..+++.+++    .|++..   ...
T Consensus       476 G~~~eA~~~~~~~---------~~~p~~-~~~~~Ll~a~~~~g~~~~a------~~~~~~l~~~----~p~~~~---~y~  532 (697)
T PLN03081        476 GLLDEAYAMIRRA---------PFKPTV-NMWAALLTACRIHKNLELG------RLAAEKLYGM----GPEKLN---NYV  532 (697)
T ss_pred             CCHHHHHHHHHHC---------CCCCCH-HHHHHHHHHHHHcCCcHHH------HHHHHHHhCC----CCCCCc---chH
Confidence            7777777766542         233443 3467777777777777665      4455544322    333333   333


Q ss_pred             cHHHHHHHhccHHHHHHHh
Q 013549          374 RTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       374 nl~~~~~~~g~yaeal~~~  392 (441)
                      .+..+|...|++++|..+.
T Consensus       533 ~L~~~y~~~G~~~~A~~v~  551 (697)
T PLN03081        533 VLLNLYNSSGRQAEAAKVV  551 (697)
T ss_pred             HHHHHHHhCCCHHHHHHHH
Confidence            4555788899999998864

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.26  E-value=3.9e-09  Score=109.55  Aligned_cols=228  Identities=11%  Similarity=0.047  Sum_probs=159.9

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      .+|++++|..+|+++.+..     +++ .++..+. .+.++..+|+|++|+..+++..+..+.+.    ..+.-++.+|.
T Consensus       130 ~~g~~~~A~~~l~~A~~~~-----~~~-~~~~~l~-~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~  198 (398)
T PRK10747        130 QRGDEARANQHLERAAELA-----DND-QLPVEIT-RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYI  198 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcC-----Ccc-hHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHH
Confidence            4689999999999998643     222 2333222 38899999999999999999988887653    35566788899


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhh---------------------hh-------------HhHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYG---------------------AV-------------NSRANAVKGLVEL  203 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~---------------------~l-------------~~~a~al~gl~~~  203 (441)
                      ++|+++++..++.+..+....    ...+..                     .+             ........+..+.
T Consensus       199 ~~gdw~~a~~~l~~l~k~~~~----~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~  274 (398)
T PRK10747        199 RTGAWSSLLDILPSMAKAHVG----DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI  274 (398)
T ss_pred             HHHhHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH
Confidence            999999988766655422100    000000                     00             0001112344556


Q ss_pred             HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549          204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT  283 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al  283 (441)
                      ..|++++|+...+++++.. .++..+.-++.+  ..|++++|....++.+.-.                  |++  ...+
T Consensus       275 ~~g~~~~A~~~L~~~l~~~-~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~------------------P~~--~~l~  331 (398)
T PRK10747        275 ECDDHDTAQQIILDGLKRQ-YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQH------------------GDT--PLLW  331 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcC-CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhC------------------CCC--HHHH
Confidence            7899999999998888843 344455555544  3488888888888876541                  111  1246


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      ..+|.++..+|+|++|++.|++++++        +|+... +.-||.++..+|+.++|      ..+|+++|...
T Consensus       332 l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~~~-~~~La~~~~~~g~~~~A------~~~~~~~l~~~  391 (398)
T PRK10747        332 STLGQLLMKHGEWQEASLAFRAALKQ--------RPDAYD-YAWLADALDRLHKPEEA------AAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCHHH-HHHHHHHHHHcCCHHHH------HHHHHHHHhhh
Confidence            78999999999999999999999986        566544 44699999999999987      89999999875

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.5e-09  Score=111.23  Aligned_cols=227  Identities=14%  Similarity=0.113  Sum_probs=178.9

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchh--H------------------------HHHHHHHHHHHHHcCChHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESW--R------------------------GISLLAMSTLLYESGNYVEAIEKL  131 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~--~------------------------a~~l~nLa~l~~~qG~y~eA~e~~  131 (441)
                      ++-+||+|+.+||..+....-.++.=|.-  +                        -.|+.-+|+.|.-+++.++|+..|
T Consensus       274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF  353 (559)
T KOG1155|consen  274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF  353 (559)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence            45679999999999887654444322110  0                        012233567778888999999999


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHH
Q 013549          132 QKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESA  211 (441)
Q Consensus       132 ~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eA  211 (441)
                      +||+++.+..++    +|--++-=|+.+-+-..|..-|+++++|-....            |+..-+|-+|-..+=..=|
T Consensus       354 kRALkLNp~~~~----aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy------------RAWYGLGQaYeim~Mh~Ya  417 (559)
T KOG1155|consen  354 KRALKLNPKYLS----AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY------------RAWYGLGQAYEIMKMHFYA  417 (559)
T ss_pred             HHHHhcCcchhH----HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH------------HHHhhhhHHHHHhcchHHH
Confidence            999999987653    343445558888888889888998886654433            3333457777777778889


Q ss_pred             HHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549          212 ESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA  291 (441)
Q Consensus       212 e~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~  291 (441)
                      .-+|++|+.-.|........+|++|.+.++.+||+.+|.||+..-       +  +           .-.++..||.+|.
T Consensus       418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-------d--t-----------e~~~l~~LakLye  477 (559)
T KOG1155|consen  418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-------D--T-----------EGSALVRLAKLYE  477 (559)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-------c--c-----------chHHHHHHHHHHH
Confidence            999999999777777888999999999999999999999999871       1  1           1246889999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      .++++.+|-.+|++.++.. ..-|..-|.|-.+..-||.-+...++|++|
T Consensus       478 ~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A  526 (559)
T KOG1155|consen  478 ELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEA  526 (559)
T ss_pred             HHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence            9999999999999999988 678999999998888899999999999998

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.23  E-value=6.8e-10  Score=105.89  Aligned_cols=178  Identities=20%  Similarity=0.186  Sum_probs=132.3

Q ss_pred             CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549          102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP  181 (441)
Q Consensus       102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~  181 (441)
                      +..+..+..+.++|..+...|+|++|+..|++++...+... ....++..++.++..+|++++|...++++++..-....
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            34456788999999999999999999999999988876531 12236788999999999999999999988754432111


Q ss_pred             CcchhhhhhHhHHHHHHHHHHHHc--------CCHHHHHHHHHhhhhccCCchHH-----------------HHHHHHHH
Q 013549          182 ENYKTYGAVNSRANAVKGLVELAH--------GNLESAESFFKGLQEEEGCTGSA-----------------ALSYGEYL  236 (441)
Q Consensus       182 ~~~~~~~~l~~~a~al~gl~~~~q--------G~y~eAe~l~~~aL~~~~~~~~~-----------------a~~~a~~~  236 (441)
                              . ..+....|.++...        |++++|...|++++...+....+                 ...+|.+|
T Consensus       106 --------~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~  176 (235)
T TIGR03302       106 --------A-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFY  176 (235)
T ss_pred             --------h-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    0 11223456666544        89999999999999844433211                 12467889


Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      ..+|+|.+|+..|+++++..   ..   .         |.  ...++.++|.+|..+|+|++|.+++++.
T Consensus       177 ~~~g~~~~A~~~~~~al~~~---p~---~---------~~--~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       177 LKRGAYVAAINRFETVVENY---PD---T---------PA--TEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHcCChHHHHHHHHHHHHHC---CC---C---------cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999873   11   0         11  2346789999999999999999977654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.23  E-value=8.2e-10  Score=121.68  Aligned_cols=129  Identities=8%  Similarity=0.029  Sum_probs=112.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      +++-+...+|+||+|+.++++++...+.+..+..+++.++..+++++||...++++|.+-                  |+
T Consensus        91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------------------p~  152 (694)
T PRK15179         91 LVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------------------SS  152 (694)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------------------CC
Confidence            456666789999999999999999888888888999999999999999999999999881                  11


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                        ...+++.+|.++..+|+|+||+++|++++.        .||+-..++.++|.++..+|+.++|      ...|++|++
T Consensus       153 --~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A------~~~~~~a~~  216 (694)
T PRK15179        153 --SAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRA------RDVLQAGLD  216 (694)
T ss_pred             --CHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHH
Confidence              234678999999999999999999999986        6788888899999999999999987      889999988


Q ss_pred             Hhh
Q 013549          357 FLK  359 (441)
Q Consensus       357 i~~  359 (441)
                      ...
T Consensus       217 ~~~  219 (694)
T PRK15179        217 AIG  219 (694)
T ss_pred             hhC
Confidence            863

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.22  E-value=7.3e-10  Score=111.67  Aligned_cols=208  Identities=13%  Similarity=0.050  Sum_probs=147.4

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      .|+-+..+..+|.+|...|++.+|...+.++....+..+... ......+.++...|++++|..+++++++.    .|..
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~P~~   76 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER-ERAHVEALSAWIAGDLPKALALLEQLLDD----YPRD   76 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCc
Confidence            577889999999999999999999999999877766543221 22333456677889999999888888643    2211


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcC----CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549          184 YKTYGAVNSRANAVKGLVELAHG----NLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ  259 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG----~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~  259 (441)
                         ...+     .+ +..+...|    +.+.+...+......++........++.++..+|+|++|+..+++++++   .
T Consensus        77 ---~~a~-----~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~  144 (355)
T cd05804          77 ---LLAL-----KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---N  144 (355)
T ss_pred             ---HHHH-----HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C
Confidence               1111     11 33334444    4444444444422233334445556788999999999999999999998   1


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH-HHHHHHHHHHHHhhch
Q 013549          260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQ  338 (441)
Q Consensus       260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va-~~l~nLa~ly~~qG~~  338 (441)
                      ..     .            ......+|.+|..+|++++|+.++++++.....     +|... ..+.++|.+|..+|++
T Consensus       145 p~-----~------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         145 PD-----D------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             CC-----C------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCH
Confidence            11     1            134689999999999999999999999987653     44443 4567899999999999


Q ss_pred             hhhhhhHHHHHHHHHHHH
Q 013549          339 EHSSALLIQEGLYRRALE  356 (441)
Q Consensus       339 eeA~~~~~Ae~ly~rAL~  356 (441)
                      ++|      ...|++++.
T Consensus       203 ~~A------~~~~~~~~~  214 (355)
T cd05804         203 EAA------LAIYDTHIA  214 (355)
T ss_pred             HHH------HHHHHHHhc
Confidence            987      888888844

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=99.22  E-value=2.8e-09  Score=110.94  Aligned_cols=240  Identities=12%  Similarity=0.057  Sum_probs=149.5

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      .+|++++|..+++++....     +++.  ..+....+.++..+|+|++|...+++.++..+.+.    .++.-++.+|.
T Consensus       130 ~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~  198 (409)
T TIGR00540       130 QRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYI  198 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Confidence            3577777777777776422     1221  01122237777777777777777777777665542    24455666677


Q ss_pred             hcCCcchhHHHHHHHHHHHHhc-------------------CCC--------cchhhhh---hHhHHHHHHHHHHHHcCC
Q 013549          158 QLGQDDTSSVVADKCLQLCEKH-------------------KPE--------NYKTYGA---VNSRANAVKGLVELAHGN  207 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~-------------------~~~--------~~~~~~~---l~~~a~al~gl~~~~qG~  207 (441)
                      ++|+++++..++.+.++.-...                   ...        .+.....   -........+..+..+|+
T Consensus       199 ~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~  278 (409)
T TIGR00540       199 RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD  278 (409)
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC
Confidence            7777776666665555320000                   000        0000000   011222234556678999


Q ss_pred             HHHHHHHHHhhhhccCCchHHH-HHH-HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH
Q 013549          208 LESAESFFKGLQEEEGCTGSAA-LSY-GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA  285 (441)
Q Consensus       208 y~eAe~l~~~aL~~~~~~~~~a-~~~-a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n  285 (441)
                      +++|+..++++++..+...... ..+ .......++.++++...++++...                  |+.+....+..
T Consensus       279 ~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~------------------p~~~~~~ll~s  340 (409)
T TIGR00540       279 HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV------------------DDKPKCCINRA  340 (409)
T ss_pred             hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC------------------CCChhHHHHHH
Confidence            9999999999999544333211 111 112233578888888888888661                  11111234679


Q ss_pred             HHHHHHHcCCHHHHHHHHHH--HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          286 LGQLEAHMGNFGDAEEILTR--TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       286 Lg~ly~~qG~y~eAe~l~~r--AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                      ||.++..+|+|++|.++|++  ++++        +|+... +..||.++..+|+.++|      ..+|+++|...-+.
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A------~~~~~~~l~~~~~~  403 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKE--------QLDAND-LAMAADAFDQAGDKAEA------AAMRQDSLGLMLAI  403 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHH------HHHHHHHHHHHhcc
Confidence            99999999999999999995  5544        566655 44899999999999887      89999999887653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.22  E-value=6.5e-09  Score=115.17  Aligned_cols=218  Identities=11%  Similarity=-0.019  Sum_probs=142.8

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|++++|+.+|+.....     ++..|+ ..+++.+-..+...|+++.|..++.......   +..++.+++.|...|.
T Consensus        99 ~~g~~~~Al~~f~~m~~~-----~~~~~~-~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~~~~~~n~Li~~y~  169 (697)
T PLN03081         99 ACGRHREALELFEILEAG-----CPFTLP-ASTYDALVEACIALKSIRCVKAVYWHVESSG---FEPDQYMMNRVLLMHV  169 (697)
T ss_pred             cCCCHHHHHHHHHHHHhc-----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCcchHHHHHHHHHHh
Confidence            357899999999987642     122232 3568888888889999999999988765432   2334567888999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-CCch----------
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE-GCTG----------  226 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~-~~~~----------  226 (441)
                      ..|+.++|..++++..      .+       +...  .+.....+...|++++|..+|++.+... ....          
T Consensus       170 k~g~~~~A~~lf~~m~------~~-------~~~t--~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~  234 (697)
T PLN03081        170 KCGMLIDARRLFDEMP------ER-------NLAS--WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS  234 (697)
T ss_pred             cCCCHHHHHHHHhcCC------CC-------Ceee--HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence            9999988888776542      01       0101  1122334567899999999999887621 1111          


Q ss_pred             -------------------------HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH
Q 013549          227 -------------------------SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA  281 (441)
Q Consensus       227 -------------------------~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~  281 (441)
                                               .+.+.+-..|.+.|++++|..+|++.       ..   +             .+.
T Consensus       235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-------~~---~-------------~~v  291 (697)
T PLN03081        235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-------PE---K-------------TTV  291 (697)
T ss_pred             hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-------CC---C-------------Chh
Confidence                                     11233455677778888877777542       11   0             134


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL  355 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL  355 (441)
                      +++.|...|...|++++|..+|.+....     | -.|+ ..+++.+-..|...|++++|      +.++...+
T Consensus       292 t~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~~~ll~a~~~~g~~~~a------~~i~~~m~  352 (697)
T PLN03081        292 AWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTFSIMIRIFSRLALLEHA------KQAHAGLI  352 (697)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhccchHHH------HHHHHHHH
Confidence            5788888999999999998888876431     2 1233 24777788888888887776      45554443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=9.4e-10  Score=114.87  Aligned_cols=272  Identities=16%  Similarity=0.148  Sum_probs=183.8

Q ss_pred             CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549           55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      +.+-+++..+-.+...-.       ++|.+-..+.+..|++.     |=|+..-  -..|| .+...|+..+=-.+-.+.
T Consensus       240 l~~~~dll~~~ad~~y~~-------c~f~~c~kit~~lle~d-----pfh~~~~--~~~ia-~l~el~~~n~Lf~lsh~L  304 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYG-------CRFKECLKITEELLEKD-----PFHLPCL--PLHIA-CLYELGKSNKLFLLSHKL  304 (611)
T ss_pred             hhhcHHHHHHHHHHHHHc-------ChHHHHHHHhHHHHhhC-----CCCcchH--HHHHH-HHHHhcccchHHHHHHHH
Confidence            344455555554443332       34556566665555533     3444433  33445 566667665544443443


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      .+..+..    ..+|.+++-.|+..|++++|..++.+|-.+-..-++            +..-.|-.+..+|..|||...
T Consensus       305 V~~yP~~----a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp------------aWl~fghsfa~e~EhdQAmaa  368 (611)
T KOG1173|consen  305 VDLYPSK----ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP------------AWLAFGHSFAGEGEHDQAMAA  368 (611)
T ss_pred             HHhCCCC----CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH------------HHHHHhHHhhhcchHHHHHHH
Confidence            3333322    237888888899999999999999988433222221            112235555679999999999


Q ss_pred             HHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549          215 FKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM  293 (441)
Q Consensus       215 ~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q  293 (441)
                      |-.|-. -..+|... +-+|.=|..+++++-|+.+|.+|++|.   -.    +.             -.++-+|.+....
T Consensus       369 Y~tAarl~~G~hlP~-LYlgmey~~t~n~kLAe~Ff~~A~ai~---P~----Dp-------------lv~~Elgvvay~~  427 (611)
T KOG1173|consen  369 YFTAARLMPGCHLPS-LYLGMEYMRTNNLKLAEKFFKQALAIA---PS----DP-------------LVLHELGVVAYTY  427 (611)
T ss_pred             HHHHHHhccCCcchH-HHHHHHHHHhccHHHHHHHHHHHHhcC---CC----cc-------------hhhhhhhheeehH
Confidence            998877 33344222 223445667999999999999999993   11    11             1368899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549          294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD  373 (441)
Q Consensus       294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~  373 (441)
                      +.|.+|..+|+.+| +..+..+++-|....+++|||-+|+.+++|++|      ...|++||..-.    ..+   .+..
T Consensus       428 ~~y~~A~~~f~~~l-~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA------I~~~q~aL~l~~----k~~---~~~a  493 (611)
T KOG1173|consen  428 EEYPEALKYFQKAL-EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA------IDYYQKALLLSP----KDA---STHA  493 (611)
T ss_pred             hhhHHHHHHHHHHH-HHhhhccccccchhHHHHhHHHHHHHHhhHHHH------HHHHHHHHHcCC----Cch---hHHH
Confidence            99999999999999 556667777778999999999999999999987      899999987642    122   2333


Q ss_pred             cHHHHHHHhccHHHHHHHh
Q 013549          374 RTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       374 nl~~~~~~~g~yaeal~~~  392 (441)
                      .+|.+|...|+.+.|+..+
T Consensus       494 sig~iy~llgnld~Aid~f  512 (611)
T KOG1173|consen  494 SIGYIYHLLGNLDKAIDHF  512 (611)
T ss_pred             HHHHHHHHhcChHHHHHHH
Confidence            4678888888888887654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.16  E-value=3.5e-09  Score=101.02  Aligned_cols=183  Identities=13%  Similarity=0.016  Sum_probs=134.4

Q ss_pred             CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549           56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE  135 (441)
Q Consensus        56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral  135 (441)
                      |.-+..+..+.+.+..+.    ..|+|++|+..|++++...     +++|....++..+|.+|..+|+|++|+..|++++
T Consensus        27 ~~~~~~~~~~~~~g~~~~----~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l   97 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEAL----DSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI   97 (235)
T ss_pred             CcccCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            445566778888888873    3689999999999999865     6677788899999999999999999999999999


Q ss_pred             HhhhhhhhhhHHHHHHHHHHHHhc--------CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHh---------HHHHHH
Q 013549          136 NFKNSILGVRVAAMEALAGLYLQL--------GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNS---------RANAVK  198 (441)
Q Consensus       136 ~i~~~~lg~~~~al~~La~l~~~~--------G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~---------~a~al~  198 (441)
                      ...+..... ..++..++.++.++        |++++|...+++++...-...    .....+..         ......
T Consensus        98 ~~~p~~~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~a~~~~~~~~~~~~~~~~~~  172 (235)
T TIGR03302        98 RLHPNHPDA-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE----YAPDAKKRMDYLRNRLAGKELYV  172 (235)
T ss_pred             HHCcCCCch-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence            888754321 23567777777765        677788888877764421111    00001100         001124


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccC---CchHHHHHHHHHHHHccChHHHHHHHHHH
Q 013549          199 GLVELAHGNLESAESFFKGLQEEEG---CTGSAALSYGEYLHATRNFLLAKKFYQKV  252 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~~~---~~~~~a~~~a~~~~~qG~y~eA~~ly~rA  252 (441)
                      +.++..+|+|++|...|+++++..+   ....+...++.++...|++++|.++++..
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5677899999999999999999433   33466788899999999999999976654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR00540 hemY_coli hemY protein

Probab=99.15  E-value=1.2e-08  Score=106.16  Aligned_cols=254  Identities=10%  Similarity=0.121  Sum_probs=150.7

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|+|.+|+..+.++....        |.-...+.-.|.++..+|++++|.+.++++.+..+.. +  ....-..+.++.
T Consensus        96 ~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-~--l~~~~~~a~l~l  164 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND-N--ILVEIARTRILL  164 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-c--hHHHHHHHHHHH
Confidence            4689999999999887643        2234455677888999999999999999987655432 1  111122477888


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--------------
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG--------------  223 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~--------------  223 (441)
                      ++|++++|...+++.++.    .|.+.        .+..+.+.++..+|++++|.+++++.++...              
T Consensus       165 ~~~~~~~Al~~l~~l~~~----~P~~~--------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~  232 (409)
T TIGR00540       165 AQNELHAARHGVDKLLEM----APRHK--------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE  232 (409)
T ss_pred             HCCCHHHHHHHHHHHHHh----CCCCH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999998877666422    23221        1223567788899999999988887775100              


Q ss_pred             ----------------------------CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549          224 ----------------------------CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL  275 (441)
Q Consensus       224 ----------------------------~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~  275 (441)
                                                  ..+.....++..+...|++++|+...+++++..   -   +....       
T Consensus       233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---p---d~~~~-------  299 (409)
T TIGR00540       233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---G---DDRAI-------  299 (409)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---C---Ccccc-------
Confidence                                        011222345556666677777777777766651   0   00000       


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH--HHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549          276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG--VVLTCLALMFRNKAMQEHSSALLIQEGLYRR  353 (441)
Q Consensus       276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va--~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r  353 (441)
                         ...  .-....+...++.+++++.+++++.        .||+-.  ..+..||.++.++|++++|      ...+++
T Consensus       300 ---~~~--~l~~~~~l~~~~~~~~~~~~e~~lk--------~~p~~~~~~ll~sLg~l~~~~~~~~~A------~~~le~  360 (409)
T TIGR00540       300 ---SLP--LCLPIPRLKPEDNEKLEKLIEKQAK--------NVDDKPKCCINRALGQLLMKHGEFIEA------ADAFKN  360 (409)
T ss_pred             ---hhH--HHHHhhhcCCCChHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHHHcccHHHH------HHHHHH
Confidence               000  1111122234556666666655553        344444  6677777888888887776      666664


Q ss_pred             HHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          354 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       354 AL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      +..+-..  |+++.    ...++.++...|+.++|...+
T Consensus       361 a~a~~~~--p~~~~----~~~La~ll~~~g~~~~A~~~~  393 (409)
T TIGR00540       361 VAACKEQ--LDAND----LAMAADAFDQAGDKAEAAAMR  393 (409)
T ss_pred             hHHhhcC--CCHHH----HHHHHHHHHHcCCHHHHHHHH
Confidence            3333221  22221    124566666666666665544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.15  E-value=2.2e-09  Score=106.38  Aligned_cols=201  Identities=16%  Similarity=0.107  Sum_probs=130.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhh---ccCCchHHHHHH---HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549          199 GLVELAHGNLESAESFFKGLQE---EEGCTGSAALSY---GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN  272 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~---~~~~~~~~a~~~---a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~  272 (441)
                      |..|...|+|++|...|.++.+   .......++..|   +.+| .++++++|+.+|++|++++.+...           
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~-----------  109 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGR-----------  109 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT------------
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCc-----------
Confidence            4456689999999999999987   222233344433   4454 445999999999999999854322           


Q ss_pred             cchhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549          273 MALEEVALAATFALGQLEAHM-GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY  351 (441)
Q Consensus       273 ~~~~~~~~~al~nLg~ly~~q-G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly  351 (441)
                        +. .-...+.++|.+|..+ |++++|.++|++|+++++..-  ..-....++.++|.++...|+|++|      ..+|
T Consensus       110 --~~-~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A------~~~~  178 (282)
T PF14938_consen  110 --FS-QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEA------IEIY  178 (282)
T ss_dssp             --HH-HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHH------HHHH
T ss_pred             --HH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHH------HHHH
Confidence              11 1123567999999999 999999999999999999753  3334557889999999999999987      8899


Q ss_pred             HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc---------hhhHHHHHHHHHHHHHhccChhHHHHhc
Q 013549          352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN---------RKDEGERMKRWAEAAWRNRRVSLAEALN  422 (441)
Q Consensus       352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~---------r~~eae~~~~~a~~~~~~~r~~~~~~l~  422 (441)
                      ++..............+-..+-+..++++..|++-.|......         .-.|+.-+.....++-.+.-=.+.+++.
T Consensus       179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~  258 (282)
T PF14938_consen  179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA  258 (282)
T ss_dssp             HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9987764221112223333344667889999998777654321         2345554545555555444334444443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.14  E-value=3e-08  Score=111.30  Aligned_cols=165  Identities=13%  Similarity=0.050  Sum_probs=106.1

Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCC----chHH--HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcc--cc
Q 013549          200 LVELAHGNLESAESFFKGLQEEEGC----TGSA--ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG--SC  271 (441)
Q Consensus       200 l~~~~qG~y~eAe~l~~~aL~~~~~----~~~~--a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg--~~  271 (441)
                      -+|+.+++.++|+++|++++...+.    ....  ...+--.|..+|+|++|..+.++..+----...     .+|  ..
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~-----~~~~~~~  409 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG-----VYGLPGK  409 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe-----ccCCCCC
Confidence            3455677777777777777662211    1111  123334566788888888888887652000000     011  01


Q ss_pred             ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549          272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY  351 (441)
Q Consensus       272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly  351 (441)
                      .++|+  .......+++++...|++.+|++.+++.+.+     .   |.-...+..+|.++..+|+..+|      +..+
T Consensus       410 ~pn~d--~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-----a---P~n~~l~~~~A~v~~~Rg~p~~A------~~~~  473 (822)
T PRK14574        410 EPNDD--WIEGQTLLVQSLVALNDLPTAQKKLEDLSST-----A---PANQNLRIALASIYLARDLPRKA------EQEL  473 (822)
T ss_pred             CCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHhcCCHHHH------HHHH
Confidence            22233  3356678999999999999999999998764     3   44555566888999999998887      7778


Q ss_pred             HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      ++++.+       +|+-....-+.+.+++.+|++.+|....
T Consensus       474 k~a~~l-------~P~~~~~~~~~~~~al~l~e~~~A~~~~  507 (822)
T PRK14574        474 KAVESL-------APRSLILERAQAETAMALQEWHQMELLT  507 (822)
T ss_pred             HHHhhh-------CCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            666554       2333334447888999999999995543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.13  E-value=1.2e-09  Score=99.46  Aligned_cols=119  Identities=12%  Similarity=0.006  Sum_probs=89.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCC---chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGC---TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                      ..|..+..+|+|++|+.+|++++...+.   ...+..++|.++..+|++++|+.+|++|+.+.   ..     . +    
T Consensus        40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~-----~-~----  106 (168)
T CHL00033         40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PF-----L-P----  106 (168)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC-----c-H----
Confidence            4577778899999999999999984322   34567889999999999999999999999982   11     1 1    


Q ss_pred             chhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHH
Q 013549          274 ALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV---GVVLTCLA  329 (441)
Q Consensus       274 ~~~~~~~~-al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v---a~~l~nLa  329 (441)
                       ..+..++ .+.++|.++..+|++++|...|.+|+.++++.+|.+|+.+   ...|.++|
T Consensus       107 -~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~  165 (168)
T CHL00033        107 -QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITG  165 (168)
T ss_pred             -HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence             0011112 2345555555999999999999999999999999999554   44444443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=1.3e-09  Score=107.55  Aligned_cols=223  Identities=15%  Similarity=0.110  Sum_probs=175.0

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|-+.+|..-++++|+-+      .||+   |+.-|+.+|.+..+-..|+..|...++..+.    +|.-+-..+.+|..
T Consensus       236 Lgm~r~AekqlqssL~q~------~~~d---TfllLskvY~ridQP~~AL~~~~~gld~fP~----~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  236 LGMPRRAEKQLQSSLTQF------PHPD---TFLLLSKVYQRIDQPERALLVIGEGLDSFPF----DVTYLLGQARIHEA  302 (478)
T ss_pred             hcChhhhHHHHHHHhhcC------Cchh---HHHHHHHHHHHhccHHHHHHHHhhhhhcCCc----hhhhhhhhHHHHHH
Confidence            355889999999998755      5665   5777888999999999999988887776653    23445567888999


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA  238 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~  238 (441)
                      ++++++|..+|...++.    ++++   .+.     .+..+..|..-++.+-|..+|+|.|.-....+...+|+|.+...
T Consensus       303 m~~~~~a~~lYk~vlk~----~~~n---vEa-----iAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y  370 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKL----HPIN---VEA-----IACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY  370 (478)
T ss_pred             HHhHHHHHHHHHHHHhc----CCcc---cee-----eeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence            99999999999887633    3221   112     23456677889999999999999999666677788899888888


Q ss_pred             ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549          239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH  318 (441)
Q Consensus       239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H  318 (441)
                      -++|+-+.+.|+||+...+. .+                .......|||.+....|++.-|...|+-||.        +.
T Consensus       371 aqQ~D~~L~sf~RAlstat~-~~----------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d  425 (478)
T KOG1129|consen  371 AQQIDLVLPSFQRALSTATQ-PG----------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SD  425 (478)
T ss_pred             hcchhhhHHHHHHHHhhccC-cc----------------hhhhhhhccceeEEeccchHHHHHHHHHHhc--------cC
Confidence            89999999999999988421 11                1234578999999999999999999998884        56


Q ss_pred             chHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          319 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       319 P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      |+-+.+|||||.+-.+.|+.++|      ..+|.-|-..
T Consensus       426 ~~h~ealnNLavL~~r~G~i~~A------rsll~~A~s~  458 (478)
T KOG1129|consen  426 AQHGEALNNLAVLAARSGDILGA------RSLLNAAKSV  458 (478)
T ss_pred             cchHHHHHhHHHHHhhcCchHHH------HHHHHHhhhh
Confidence            77899999999999999998887      6777777544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=8.2e-09  Score=105.88  Aligned_cols=257  Identities=13%  Similarity=0.081  Sum_probs=179.8

Q ss_pred             hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---------------
Q 013549           81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---------------  145 (441)
Q Consensus        81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---------------  145 (441)
                      ..+++++=+++-.++.       =|.--..-+..|.+.+.+-+|++|+..|+...+-.+=-++..               
T Consensus       242 q~~e~~~k~e~l~~~g-------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk  314 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVG-------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK  314 (559)
T ss_pred             HHHHHHHHHHHHHhcc-------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence            4667777777766542       122334566788899999999999999998754322111110               


Q ss_pred             ---------------HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549          146 ---------------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES  210 (441)
Q Consensus       146 ---------------~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e  210 (441)
                                     ..+.--+++.|.-.+++..|.++++++|++-.+..            .+..|.|-=|....+-..
T Consensus       315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~------------~aWTLmGHEyvEmKNt~A  382 (559)
T KOG1155|consen  315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL------------SAWTLMGHEYVEMKNTHA  382 (559)
T ss_pred             HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh------------HHHHHhhHHHHHhcccHH
Confidence                           00000134444455556667777777764432221            123355655666677777


Q ss_pred             HHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549          211 AESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE  290 (441)
Q Consensus       211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly  290 (441)
                      |..-|++|++..+....+...+|..|-.++-..=|.-+|+||++.    +.   ++             -.....||+.|
T Consensus       383 Ai~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~----kP---nD-------------sRlw~aLG~CY  442 (559)
T KOG1155|consen  383 AIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL----KP---ND-------------SRLWVALGECY  442 (559)
T ss_pred             HHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc----CC---Cc-------------hHHHHHHHHHH
Confidence            777788887766656667777888888888888888888888876    11   01             12357899999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHh
Q 013549          291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVET  370 (441)
Q Consensus       291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~  370 (441)
                      .+.++.+||+..|++|+..-..        -...|..||.+|.+.+++++|      -..|.+.++.....+...|.+..
T Consensus       443 ~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eA------a~~yek~v~~~~~eg~~~~~t~k  508 (559)
T KOG1155|consen  443 EKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEA------AQYYEKYVEVSELEGEIDDETIK  508 (559)
T ss_pred             HHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHhhcccchHHHH
Confidence            9999999999999999875432        357899999999999999887      78999999988666777777777


Q ss_pred             hhccHHHHHHHhccHHHHHH
Q 013549          371 KVDRTDIVALARGGYAEALS  390 (441)
Q Consensus       371 ~l~nl~~~~~~~g~yaeal~  390 (441)
                      ..-.|+.-+...++|++|-.
T Consensus       509 a~~fLA~~f~k~~~~~~As~  528 (559)
T KOG1155|consen  509 ARLFLAEYFKKMKDFDEASY  528 (559)
T ss_pred             HHHHHHHHHHhhcchHHHHH
Confidence            77778999999999988855

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.11  E-value=8.1e-10  Score=100.65  Aligned_cols=139  Identities=12%  Similarity=0.098  Sum_probs=94.4

Q ss_pred             cCCHHHHHHHHHhhhh--ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          205 HGNLESAESFFKGLQE--EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       205 qG~y~eAe~l~~~aL~--~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      +..|..+...+...+.  ...........+|.++..+|+|++|+.+|++|+.+.   ..   +.           ....+
T Consensus        12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~---~~-----------~~~~~   74 (168)
T CHL00033         12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---ID---PY-----------DRSYI   74 (168)
T ss_pred             ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cc---ch-----------hhHHH
Confidence            4445555555544443  122223445677889999999999999999999982   11   10           02346


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cC
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-AP  361 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~  361 (441)
                      ++++|.+|..+|++++|+.+|++|+.+... .+..|+.++.++.++|.++..+|++++|      ...|.+++++++ +.
T Consensus        75 ~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A------~~~~~~a~~~~~~a~  147 (168)
T CHL00033         75 LYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIA------EAWFDQAAEYWKQAI  147 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHH------HHHHHHHHHHHHHHH
Confidence            899999999999999999999999988322 2223344444444444444488888776      888999999985 44


Q ss_pred             CCCCcc
Q 013549          362 PLESEG  367 (441)
Q Consensus       362 ~~~~~~  367 (441)
                      +.+++.
T Consensus       148 ~~~p~~  153 (168)
T CHL00033        148 ALAPGN  153 (168)
T ss_pred             HhCccc
Confidence            555544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.09  E-value=4.6e-08  Score=101.53  Aligned_cols=246  Identities=12%  Similarity=0.110  Sum_probs=162.5

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|+|++|+....++-..      .++|.+.  +...+.....+|++++|...|+++.+..+...   ....--.+.++..
T Consensus        97 eGd~~~A~k~l~~~~~~------~~~p~l~--~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~---~~~~l~~a~l~l~  165 (398)
T PRK10747         97 EGDYQQVEKLMTRNADH------AEQPVVN--YLLAAEAAQQRGDEARANQHLERAAELADNDQ---LPVEITRVRIQLA  165 (398)
T ss_pred             CCCHHHHHHHHHHHHhc------ccchHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHH
Confidence            58899999777765432      2344433  44446666999999999999999977655431   1111123678889


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----------------
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE-----------------  221 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-----------------  221 (441)
                      +|++++|...+++..+..    |.+.        .+..+...+|..+|++++|..++.+..+.                 
T Consensus       166 ~g~~~~Al~~l~~~~~~~----P~~~--------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~  233 (398)
T PRK10747        166 RNENHAARHGVDKLLEVA----PRHP--------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI  233 (398)
T ss_pred             CCCHHHHHHHHHHHHhcC----CCCH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999998887775332    2211        12224566677889999998766655430                 


Q ss_pred             -------------------------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          222 -------------------------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       222 -------------------------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                                               .+..+.+...|+..+...|+.++|+...++++..   ..             ++ 
T Consensus       234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~-------------~~-  296 (398)
T PRK10747        234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QY-------------DE-  296 (398)
T ss_pred             HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-------------CH-
Confidence                                     0112334556788888899999999999888763   10             01 


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                        .+  ..-.+.+  ..|+++++.+..++.+        +.||+-...+..+|.++..+|++++|      ...|+++++
T Consensus       297 --~l--~~l~~~l--~~~~~~~al~~~e~~l--------k~~P~~~~l~l~lgrl~~~~~~~~~A------~~~le~al~  356 (398)
T PRK10747        297 --RL--VLLIPRL--KTNNPEQLEKVLRQQI--------KQHGDTPLLWSTLGQLLMKHGEWQEA------SLAFRAALK  356 (398)
T ss_pred             --HH--HHHHhhc--cCCChHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHh
Confidence              11  1112222  3488888877777666        57888888899999999999999887      888999887


Q ss_pred             HhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          357 FLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       357 i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      +.    |+.+.    .-.++.++..+|+.++|...+
T Consensus       357 ~~----P~~~~----~~~La~~~~~~g~~~~A~~~~  384 (398)
T PRK10747        357 QR----PDAYD----YAWLADALDRLHKPEEAAAMR  384 (398)
T ss_pred             cC----CCHHH----HHHHHHHHHHcCCHHHHHHHH
Confidence            62    22222    224777778888877776654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.09  E-value=7.9e-09  Score=102.37  Aligned_cols=179  Identities=15%  Similarity=0.102  Sum_probs=117.2

Q ss_pred             CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549          103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE  182 (441)
Q Consensus       103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~  182 (441)
                      +..+.+..+..-|..|...|+|++|.+.|.++.++... .                 +....+...+..           
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~-~-----------------~~~~~Aa~~~~~-----------   80 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK-L-----------------GDKFEAAKAYEE-----------   80 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-T-----------------T-HHHHHHHHHH-----------
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-c-----------------CCHHHHHHHHHH-----------
Confidence            56667777888888888888888888888887555443 1                 221111111111           


Q ss_pred             cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh---ccCCc---hHHHHHHHHHHHHc-cChHHHHHHHHHHHHH
Q 013549          183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE---EEGCT---GSAALSYGEYLHAT-RNFLLAKKFYQKVIEV  255 (441)
Q Consensus       183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~---~~~~~---~~~a~~~a~~~~~q-G~y~eA~~ly~rAL~i  255 (441)
                                     .+.++ ..+++++|..+|++++.   .....   ......+|.+|..+ |++++|.++|++|+++
T Consensus        81 ---------------Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   81 ---------------AANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             ---------------HHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             ---------------HHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                           12222 44488888888888887   22222   23345679999999 9999999999999999


Q ss_pred             HHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549          256 LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK  335 (441)
Q Consensus       256 ~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q  335 (441)
                      ++....              .......+.++|.++..+|+|++|.++|++......+.-.. .+.+...+.+...++-.+
T Consensus       145 y~~e~~--------------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-~~~~~~~~l~a~l~~L~~  209 (282)
T PF14938_consen  145 YEQEGS--------------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-KYSAKEYFLKAILCHLAM  209 (282)
T ss_dssp             HHHTT---------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-GHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCC--------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHc
Confidence            754221              11133467899999999999999999999987754333222 235667778888899999


Q ss_pred             hchhhh
Q 013549          336 AMQEHS  341 (441)
Q Consensus       336 G~~eeA  341 (441)
                      |++..|
T Consensus       210 ~D~v~A  215 (282)
T PF14938_consen  210 GDYVAA  215 (282)
T ss_dssp             T-HHHH
T ss_pred             CCHHHH
Confidence            987665

>PLN03077 Protein ECB2; Provisional

Probab=99.09  E-value=3.6e-08  Score=111.73  Aligned_cols=181  Identities=15%  Similarity=0.076  Sum_probs=95.4

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh--hh----------------
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK--NS----------------  140 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~--~~----------------  140 (441)
                      .|++++|..+|++...          |+ ..+++.|-..|.+.|++++|+++|++.....  +.                
T Consensus       235 ~g~~~~A~~lf~~m~~----------~d-~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~  303 (857)
T PLN03077        235 CGDVVSARLVFDRMPR----------RD-CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD  303 (857)
T ss_pred             CCCHHHHHHHHhcCCC----------CC-cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence            3567777777776531          11 1357777777777777777777777654321  00                


Q ss_pred             --------------hhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcC
Q 013549          141 --------------ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG  206 (441)
Q Consensus       141 --------------~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG  206 (441)
                                    .+..++.+++.|...|...|+.++|..++++..    ....      ..     .+.....|...|
T Consensus       304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~------~s-----~n~li~~~~~~g  368 (857)
T PLN03077        304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA------VS-----WTAMISGYEKNG  368 (857)
T ss_pred             hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe------ee-----HHHHHHHHHhCC
Confidence                          011233455666666666677666666655431    0000      01     111233445677


Q ss_pred             CHHHHHHHHHhhhhc-cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH
Q 013549          207 NLESAESFFKGLQEE-EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA  285 (441)
Q Consensus       207 ~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n  285 (441)
                      ++++|..+|++.... -.+...+..++-..+...|++++|.++++.++..     +      +.     +   ...+.+.
T Consensus       369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-----g------~~-----~---~~~~~n~  429 (857)
T PLN03077        369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-----G------LI-----S---YVVVANA  429 (857)
T ss_pred             CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-----C------CC-----c---chHHHHH
Confidence            777777777766551 1111122223333445566666666666655433     1      00     0   1223455


Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q 013549          286 LGQLEAHMGNFGDAEEILT  304 (441)
Q Consensus       286 Lg~ly~~qG~y~eAe~l~~  304 (441)
                      |-..|...|++++|+++|.
T Consensus       430 Li~~y~k~g~~~~A~~vf~  448 (857)
T PLN03077        430 LIEMYSKCKCIDKALEVFH  448 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            6666666666666666654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=3.5e-09  Score=110.95  Aligned_cols=209  Identities=16%  Similarity=0.177  Sum_probs=160.9

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|...+|.-.||.+..        +.|.-+.+-.-||.+...-++=..||.-+++++++.+.-+    .++-+|+.-|..
T Consensus       298 nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----eaLmaLAVSytN  365 (579)
T KOG1125|consen  298 NGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----EALMALAVSYTN  365 (579)
T ss_pred             cCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----HHHHHHHHHHhh
Confidence            3557799999999884        6888899999999999999999999999999998876654    366777887888


Q ss_pred             cCCcchhHHHHHHHHHHH-------HhcCCCc---------chhhhh---------------hHhHHHHHHHHHHHHcCC
Q 013549          159 LGQDDTSSVVADKCLQLC-------EKHKPEN---------YKTYGA---------------VNSRANAVKGLVELAHGN  207 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~-------~~~~~~~---------~~~~~~---------------l~~~a~al~gl~~~~qG~  207 (441)
                      .|...+|..++++=+..-       ....+..         ......               +..-....+|++|...|+
T Consensus       366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e  445 (579)
T KOG1125|consen  366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE  445 (579)
T ss_pred             hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence            888777777666643221       0000000         000000               111122346888889999


Q ss_pred             HHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHH
Q 013549          208 LESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG  287 (441)
Q Consensus       208 y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg  287 (441)
                      ||+|..+|+.||...|......+.||..+-.--+.+||+.-|+|||++   .-+                 .+.+-+|||
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~-----------------yVR~RyNlg  505 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPG-----------------YVRVRYNLG  505 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCC-----------------eeeeehhhh
Confidence            999999999999988878888899999999999999999999999999   222                 234678999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549          288 QLEAHMGNFGDAEEILTRTLTKTEELFGSHHP  319 (441)
Q Consensus       288 ~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP  319 (441)
                      ..+..+|.|+||.++|..||.+.++..+..--
T Consensus       506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~  537 (579)
T KOG1125|consen  506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKA  537 (579)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhhhcccccccC
Confidence            99999999999999999999999996554443

>PLN03077 Protein ECB2; Provisional

Probab=99.07  E-value=3e-08  Score=112.34  Aligned_cols=189  Identities=11%  Similarity=0.041  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549          110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA  189 (441)
Q Consensus       110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~  189 (441)
                      +++.|-..|.+.|++++|++.|++..       ...+.+++.+...|.+.|+..+|..++++.+.   ...+..    .+
T Consensus       426 ~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~---~~~pd~----~t  491 (857)
T PLN03077        426 VANALIEMYSKCKCIDKALEVFHNIP-------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL---TLKPNS----VT  491 (857)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh---CCCCCH----hH
Confidence            44555566666666666666666531       11233667777777777777777777776642   111110    00


Q ss_pred             hHhHHH------------------------------HHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549          190 VNSRAN------------------------------AVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT  239 (441)
Q Consensus       190 l~~~a~------------------------------al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q  239 (441)
                      +.....                              +.+-..|...|++++|...|.+. .   ....+.+.+...|...
T Consensus       492 ~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~---~d~~s~n~lI~~~~~~  567 (857)
T PLN03077        492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E---KDVVSWNILLTGYVAH  567 (857)
T ss_pred             HHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C---CChhhHHHHHHHHHHc
Confidence            000000                              00113455678888888777775 1   1222344555566777


Q ss_pred             cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549          240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP  319 (441)
Q Consensus       240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP  319 (441)
                      |+.++|+.+|++..+.     +      +.     |+.   .+++.+=..+.+.|++++|..+|++....+    | -.|
T Consensus       568 G~~~~A~~lf~~M~~~-----g------~~-----Pd~---~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~----g-i~P  623 (857)
T PLN03077        568 GKGSMAVELFNRMVES-----G------VN-----PDE---VTFISLLCACSRSGMVTQGLEYFHSMEEKY----S-ITP  623 (857)
T ss_pred             CCHHHHHHHHHHHHHc-----C------CC-----CCc---ccHHHHHHHHhhcChHHHHHHHHHHHHHHh----C-CCC
Confidence            8888888888775532     1      01     222   234455556777788777777777654322    1 234


Q ss_pred             hHHHHHHHHHHHHHHhhchhhh
Q 013549          320 KVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       320 ~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      ++ .++++|..+|.+.|++++|
T Consensus       624 ~~-~~y~~lv~~l~r~G~~~eA  644 (857)
T PLN03077        624 NL-KHYACVVDLLGRAGKLTEA  644 (857)
T ss_pred             ch-HHHHHHHHHHHhCCCHHHH
Confidence            43 5677777778887777776

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.03  E-value=6e-08  Score=108.88  Aligned_cols=171  Identities=11%  Similarity=-0.017  Sum_probs=128.6

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Q 013549           99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK  178 (441)
Q Consensus        99 ~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~  178 (441)
                      .+.+.||.   +...-+.+..++|+|++|++.|+++++..+....    ++..++.++..+|++++|+.++++++    .
T Consensus        28 ~~~p~~~~---~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~----av~dll~l~~~~G~~~~A~~~~eka~----~   96 (822)
T PRK14574         28 VVNPAMAD---TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG----QVDDWLQIAGWAGRDQEVIDVYERYQ----S   96 (822)
T ss_pred             ccCccchh---HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh----hHHHHHHHHHHcCCcHHHHHHHHHhc----c
Confidence            45566655   7788889999999999999999999988876421    22367777888899999999999886    1


Q ss_pred             cCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Q 013549          179 HKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAE  258 (441)
Q Consensus       179 ~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~  258 (441)
                      ..+        ...+.....+.++..+|+|++|+.+|+++++..+..+.+...++.++...|++++|+..+++++...  
T Consensus        97 p~n--------~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--  166 (822)
T PRK14574         97 SMN--------ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--  166 (822)
T ss_pred             CCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--
Confidence            111        1112222235578889999999999999999766666676777888999999999999999987761  


Q ss_pred             hcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          259 QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       259 ~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                        .              +   ......++.++..++++.+|++.|+++++.
T Consensus       167 --p--------------~---~~~~l~layL~~~~~~~~~AL~~~ekll~~  198 (822)
T PRK14574        167 --P--------------T---VQNYMTLSYLNRATDRNYDALQASSEAVRL  198 (822)
T ss_pred             --c--------------c---hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence              1              0   111245677777789998899999998875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=4.8e-08  Score=100.88  Aligned_cols=296  Identities=16%  Similarity=0.092  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCC-----chhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLA-----ESWRGISLLAMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~-----h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      ..+.-+.-|-.++.+   ....|..|.+..++.-...+.....+     -...|.+|+-.|..+.-.|++-.|.+.+..+
T Consensus       276 sDa~l~~~l~~l~~~---~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~  352 (606)
T KOG0547|consen  276 SDAALAEALEALEKG---LEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA  352 (606)
T ss_pred             chhhHHHHHHHHHhh---CchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence            445555666666622   45679999998888766555544322     2346899999999999999999999999999


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      +.+.+....    .+-.++.+|+++.+..+....++++.++--.       +.+...-     .|-+++-.++|++|..=
T Consensus       353 I~l~~~~~~----lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-------n~dvYyH-----RgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  353 IKLDPAFNS----LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-------NPDVYYH-----RGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             HhcCcccch----HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-------CCchhHh-----HHHHHHHHHHHHHHHHH
Confidence            888765421    2556778888888888888888887644322       1122222     35566678999999999


Q ss_pred             HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549          215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG  294 (441)
Q Consensus       215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG  294 (441)
                      |++++...+.+.-...-++-+.++++++++++..|+.+..-+      +  ..       |+     .++-.|+++.+|+
T Consensus       417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF------P--~~-------~E-----vy~~fAeiLtDqq  476 (606)
T KOG0547|consen  417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF------P--NC-------PE-----VYNLFAEILTDQQ  476 (606)
T ss_pred             HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------C--CC-------ch-----HHHHHHHHHhhHH
Confidence            999999666555555666778889999999999999987653      0  00       11     3567899999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH-HhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549          295 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR-NKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD  373 (441)
Q Consensus       295 ~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~-~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~  373 (441)
                      +|++|++.|.+|+.+-.+.-+ -|-.. ..|.+=|.+.. =.++      |..|+.|.++|+++-       |..--...
T Consensus       477 qFd~A~k~YD~ai~LE~~~~~-~~v~~-~plV~Ka~l~~qwk~d------~~~a~~Ll~KA~e~D-------pkce~A~~  541 (606)
T KOG0547|consen  477 QFDKAVKQYDKAIELEPREHL-IIVNA-APLVHKALLVLQWKED------INQAENLLRKAIELD-------PKCEQAYE  541 (606)
T ss_pred             hHHHHHHHHHHHHhhcccccc-ccccc-hhhhhhhHhhhchhhh------HHHHHHHHHHHHccC-------chHHHHHH
Confidence            999999999999988765211 11111 12222222221 1234      455689999998773       22223344


Q ss_pred             cHHHHHHHhccHHHHHHHhhchh----hHHHHHH--HHHHHH
Q 013549          374 RTDIVALARGGYAEALSVQQNRK----DEGERMK--RWAEAA  409 (441)
Q Consensus       374 nl~~~~~~~g~yaeal~~~~~r~----~eae~~~--~~a~~~  409 (441)
                      .++-+.+.||+-++|+..++...    .|.|+++  ..++++
T Consensus       542 tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~aeAA  583 (606)
T KOG0547|consen  542 TLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSLAEAA  583 (606)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            67888899999999999885533    2345544  355655

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=9.9e-09  Score=104.86  Aligned_cols=103  Identities=16%  Similarity=0.233  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549           61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus        61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      +-..+.|+|.-|    +...-|.||+..||-.....      --|..+..-.|||++|.++..|.+|+..|+-+++-.++
T Consensus       200 tfsvl~nlaqqy----~~ndm~~ealntyeiivknk------mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps  269 (840)
T KOG2003|consen  200 TFSVLFNLAQQY----EANDMTAEALNTYEIIVKNK------MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS  269 (840)
T ss_pred             hHHHHHHHHHHh----hhhHHHHHHhhhhhhhhccc------ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc
Confidence            334455555554    34556888888888766543      13344556678888888888888888888888877666


Q ss_pred             hhhh-hHHHHHHHHHHHHhcCCcchhHHHHHHHH
Q 013549          141 ILGV-RVAAMEALAGLYLQLGQDDTSSVVADKCL  173 (441)
Q Consensus       141 ~lg~-~~~al~~La~l~~~~G~~~~A~~l~~~~L  173 (441)
                      .-.. +...++|++..+.+.|+|+.|...++.|+
T Consensus       270 ink~~rikil~nigvtfiq~gqy~dainsfdh~m  303 (840)
T KOG2003|consen  270 INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCM  303 (840)
T ss_pred             cchhhHHHHHhhcCeeEEecccchhhHhhHHHHH
Confidence            5332 45677777777788888888877777765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=5.4e-08  Score=96.37  Aligned_cols=274  Identities=12%  Similarity=0.074  Sum_probs=183.7

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHH--HHHHHHHHHHcCChHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGIS--LLAMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~--l~nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      .-|.++..+-.|-.-|      ..+-..|-......++........+|-.+-.-  -+.||..|.+.|-+.+|++-++.+
T Consensus       176 ~~p~l~kaLFey~fyh------enDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekqlqss  249 (478)
T KOG1129|consen  176 ERPTLVKALFEYLFYH------ENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSS  249 (478)
T ss_pred             cChHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHH
Confidence            4577777777776655      12344444444444444433333333333222  267999999999999999999999


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      ++-.+-.     .+.--|.-+|....+-..|+.++..-++.+       +.+..-+     .-...++...+++++|.++
T Consensus       250 L~q~~~~-----dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~VT~l-----~g~ARi~eam~~~~~a~~l  312 (478)
T KOG1129|consen  250 LTQFPHP-----DTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFDVTYL-----LGQARIHEAMEQQEDALQL  312 (478)
T ss_pred             hhcCCch-----hHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------Cchhhhh-----hhhHHHHHHHHhHHHHHHH
Confidence            8765431     133346677777776655555444333211       1111111     1123455679999999999


Q ss_pred             HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549          215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG  294 (441)
Q Consensus       215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG  294 (441)
                      |+++++.++.+..+.-++|.-|..-|+.+-|.-+|+|-|.+-          .     .+|+     -.+|+|..-..-+
T Consensus       313 Yk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG----------~-----~spe-----Lf~NigLCC~yaq  372 (478)
T KOG1129|consen  313 YKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG----------A-----QSPE-----LFCNIGLCCLYAQ  372 (478)
T ss_pred             HHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc----------C-----CChH-----HHhhHHHHHHhhc
Confidence            999999766665555556666777899999999999999871          1     1122     2689999888899


Q ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549          295 NFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD  373 (441)
Q Consensus       295 ~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~  373 (441)
                      +||-+.+.|+|||...+      .|.. +.+..|||.+-..-|++.-|          .|++.|.-...   ++-...++
T Consensus       373 Q~D~~L~sf~RAlstat------~~~~aaDvWYNlg~vaV~iGD~nlA----------~rcfrlaL~~d---~~h~ealn  433 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTAT------QPGQAADVWYNLGFVAVTIGDFNLA----------KRCFRLALTSD---AQHGEALN  433 (478)
T ss_pred             chhhhHHHHHHHHhhcc------CcchhhhhhhccceeEEeccchHHH----------HHHHHHHhccC---cchHHHHH
Confidence            99999999999998865      3554 47889999999999986543          45555543222   33457899


Q ss_pred             cHHHHHHHhccHHHHHHHh
Q 013549          374 RTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       374 nl~~~~~~~g~yaeal~~~  392 (441)
                      |++++....|+..+|-+..
T Consensus       434 NLavL~~r~G~i~~Arsll  452 (478)
T KOG1129|consen  434 NLAVLAARSGDILGARSLL  452 (478)
T ss_pred             hHHHHHhhcCchHHHHHHH
Confidence            9999998888887776654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=3.8e-08  Score=100.65  Aligned_cols=238  Identities=20%  Similarity=0.263  Sum_probs=165.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549          112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG--QDDTSSVVADKCLQLCEKHKPENYKTYGA  189 (441)
Q Consensus       112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G--~~~~A~~l~~~~L~i~~~~~~~~~~~~~~  189 (441)
                      .|-+..|.++|+|+.|++.+.-- .-...  ....++.+||..++.-||  +...|..|++.++.+-+      |     
T Consensus       423 i~ka~~~lk~~d~~~aieilkv~-~~kdn--k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr------y-----  488 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKVF-EKKDN--KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR------Y-----  488 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHHH-Hhccc--hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc------c-----
Confidence            35566788999999999887532 11110  112347788988877666  45677888887764421      1     


Q ss_pred             hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 013549          190 VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG  269 (441)
Q Consensus       190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg  269 (441)
                       +.-+....|.+....|+||.|..+|+++|.....-..+.+++|..+..+|+.+||.++|-+--.|..   .        
T Consensus       489 -n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~---n--------  556 (840)
T KOG2003|consen  489 -NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL---N--------  556 (840)
T ss_pred             -CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH---h--------
Confidence             1111223455556899999999999999995443345778999999999999999999999888842   1        


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh--------
Q 013549          270 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS--------  341 (441)
Q Consensus       270 ~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA--------  341 (441)
                               .+..+.-++++|..+.+-.+|+++|.|+..     +-|+.|.+   |..||.+|.+-|+-.+|        
T Consensus       557 ---------n~evl~qianiye~led~aqaie~~~q~~s-----lip~dp~i---lskl~dlydqegdksqafq~~ydsy  619 (840)
T KOG2003|consen  557 ---------NAEVLVQIANIYELLEDPAQAIELLMQANS-----LIPNDPAI---LSKLADLYDQEGDKSQAFQCHYDSY  619 (840)
T ss_pred             ---------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-----cCCCCHHH---HHHHHHHhhcccchhhhhhhhhhcc
Confidence                     134578999999999999999999999864     45777765   55677999998887766        


Q ss_pred             -------------hhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          342 -------------SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       342 -------------~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                                   -+|-+--.+.++++..++...+-.|.....---++.++...|.|..|+..+
T Consensus       620 ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y  683 (840)
T KOG2003|consen  620 RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence                         011122345577888876545555654333223677788889998887654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.99  E-value=3.8e-09  Score=94.40  Aligned_cols=109  Identities=12%  Similarity=0.059  Sum_probs=69.0

Q ss_pred             HHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549          212 ESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA  291 (441)
Q Consensus       212 e~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~  291 (441)
                      +.+|++++...+..   ..++|.++..+|+|++|..+|++++.+   .     +.            ...+++++|.++.
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~---~-----P~------------~~~a~~~lg~~~~   69 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA---Q-----PW------------SWRAHIALAGTWM   69 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc---C-----CC------------cHHHHHHHHHHHH
Confidence            45566666643322   334566667777777777777777665   1     00            1234567777777


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      .+|+|++|+..|.+|+.+        .|.-...+.++|.+|..+|++++|      ...|++|+++
T Consensus        70 ~~g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eA------i~~~~~Al~~  121 (144)
T PRK15359         70 MLKEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLA------REAFQTAIKM  121 (144)
T ss_pred             HHhhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHH------HHHHHHHHHh
Confidence            777777777777777764        345556667777777777777665      6677777665

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.98  E-value=7e-10  Score=76.97  Aligned_cols=41  Identities=29%  Similarity=0.443  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch
Q 013549          280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK  320 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~  320 (441)
                      +.+++|||.+|..+|+|++|++++++++.|+++++|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            45789999999999999999999999999999999999996

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.97  E-value=1.8e-07  Score=92.57  Aligned_cols=223  Identities=19%  Similarity=0.191  Sum_probs=160.7

Q ss_pred             hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549           81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG  160 (441)
Q Consensus        81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G  160 (441)
                      .-|+|+..|-..+.        ..|++-.+...||++|+++|.-+.||-+.|--++.-.-....+.-++..|+.=|+..|
T Consensus        50 Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG  121 (389)
T COG2956          50 QPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG  121 (389)
T ss_pred             CcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence            35689999988885        5778999999999999999999999999886543322222334557778888888888


Q ss_pred             CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHH--HHHHHHHcCCHHHHHHHHHhhhhccC--CchHHHHHH---H
Q 013549          161 QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAV--KGLVELAHGNLESAESFFKGLQEEEG--CTGSAALSY---G  233 (441)
Q Consensus       161 ~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al--~gl~~~~qG~y~eAe~l~~~aL~~~~--~~~~~a~~~---a  233 (441)
                      -+|.|+..+....+.-+-              .-.++  +-.+|....++++|+..-++-.+..+  ....++.-|   |
T Consensus       122 l~DRAE~~f~~L~de~ef--------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA  187 (389)
T COG2956         122 LLDRAEDIFNQLVDEGEF--------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA  187 (389)
T ss_pred             hhhHHHHHHHHHhcchhh--------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence            888888877665421111              11111  23345677789999988888777322  223445443   4


Q ss_pred             HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      ..+....+++.|..+.+||+..   .+.     .            +.+..-||.++..+|+|..|.+.++++++     
T Consensus       188 q~~~~~~~~d~A~~~l~kAlqa---~~~-----c------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~e-----  242 (389)
T COG2956         188 QQALASSDVDRARELLKKALQA---DKK-----C------------VRASIILGRVELAKGDYQKAVEALERVLE-----  242 (389)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhh---Ccc-----c------------eehhhhhhHHHHhccchHHHHHHHHHHHH-----
Confidence            4455668899999999999987   332     1            23456799999999999888776666554     


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                        .+|--+..++.-|...|..+|+.++.      +...+++.+..
T Consensus       243 --Qn~~yl~evl~~L~~~Y~~lg~~~~~------~~fL~~~~~~~  279 (389)
T COG2956         243 --QNPEYLSEVLEMLYECYAQLGKPAEG------LNFLRRAMETN  279 (389)
T ss_pred             --hChHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHcc
Confidence              56666778999999999999998876      77788887765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.97  E-value=3e-08  Score=109.45  Aligned_cols=137  Identities=8%  Similarity=0.001  Sum_probs=115.4

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      -|.....+.+||.+..++|+|+||+.++++++.+.+.+.+    +..+++.+..+++++++|...+++++...    +  
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~~~~eeA~~~~~~~l~~~----p--  151 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQQGIEAGRAEIELYFSGG----S--  151 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhccHHHHHHHHHHHhhcC----C--
Confidence            4556889999999999999999999999999999987653    66788899999999999999888886332    2  


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549          184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVL  256 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~  256 (441)
                       +....     ..+.+.+....|+|++|+.+|++++..++...++..++|.++..+|+.++|...|++|++..
T Consensus       152 -~~~~~-----~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        152 -SSARE-----ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             -CCHHH-----HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence             12222     23456666799999999999999999666677899999999999999999999999999873

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.94  E-value=1.5e-08  Score=90.60  Aligned_cols=108  Identities=14%  Similarity=0.115  Sum_probs=89.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|.+...+|+|++|..+|++++...+....+..++|.++..+|+|++|+..|++|+++   .-.                
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p~----------------   90 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML---DAS----------------   90 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCC----------------
Confidence            3667789999999999999999977778888899999999999999999999999987   111                


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR  333 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~  333 (441)
                       ...+++++|.++..+|++++|++.|.+|+.+.     |++|.   .+.+++.+..
T Consensus        91 -~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-----p~~~~---~~~~~~~~~~  137 (144)
T PRK15359         91 -HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-----YADAS---WSEIRQNAQI  137 (144)
T ss_pred             -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChH---HHHHHHHHHH
Confidence             12467999999999999999999999999854     45544   4455555543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.89  E-value=2.2e-08  Score=86.99  Aligned_cols=112  Identities=12%  Similarity=-0.014  Sum_probs=88.6

Q ss_pred             HHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549          213 SFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH  292 (441)
Q Consensus       213 ~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~  292 (441)
                      .+|++++...+....+...++..+..+|+|++|..++++++.+.   -     .            ......++|.+|..
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p-----~------------~~~~~~~la~~~~~   63 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---P-----Y------------NSRYWLGLAACCQM   63 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---C-----C------------cHHHHHHHHHHHHH
Confidence            35677777555556677788888999999999999999988771   1     0            12356789999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          293 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +|+|++|+++|++++.+        +|.....+.++|.+|..+|++++|      ...|++++++.
T Consensus        64 ~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~  115 (135)
T TIGR02552        64 LKEYEEAIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESA------LKALDLAIEIC  115 (135)
T ss_pred             HHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhc
Confidence            99999999999998886        466777788899999999998887      78888888764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.3e-07  Score=97.85  Aligned_cols=229  Identities=13%  Similarity=0.109  Sum_probs=172.3

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|++-.|.+-+..+....        |..-..|-.+|..|.++.+-.+-...|.+|.++.+...    ..+...+-++.-
T Consensus       339 ~g~~~~a~~d~~~~I~l~--------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~----dvYyHRgQm~fl  406 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLD--------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP----DVYYHRGQMRFL  406 (606)
T ss_pred             cCCchhhhhhHHHHHhcC--------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----chhHhHHHHHHH
Confidence            467788888888888643        33344499999999999999999999999988877642    245667777777


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA  238 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~  238 (441)
                      +++|++|..=+++|..+.    |+      .+...  .=++.+.+.|+++++++..|+.+....|.-+.+-.-+|+++..
T Consensus       407 L~q~e~A~aDF~Kai~L~----pe------~~~~~--iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD  474 (606)
T KOG0547|consen  407 LQQYEEAIADFQKAISLD----PE------NAYAY--IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD  474 (606)
T ss_pred             HHHHHHHHHHHHHHhhcC----hh------hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence            889999998899886443    11      11111  1134445689999999999999999776666666667999999


Q ss_pred             ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA--LGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n--Lg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      |++|++|+..|.+|+++-   .. .+...++          .+.+.+  +..+.. .+++++|+.++.+|+++       
T Consensus       475 qqqFd~A~k~YD~ai~LE---~~-~~~~~v~----------~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~-------  532 (606)
T KOG0547|consen  475 QQQFDKAVKQYDKAIELE---PR-EHLIIVN----------AAPLVHKALLVLQW-KEDINQAENLLRKAIEL-------  532 (606)
T ss_pred             HHhHHHHHHHHHHHHhhc---cc-ccccccc----------chhhhhhhHhhhch-hhhHHHHHHHHHHHHcc-------
Confidence            999999999999999982   11 1222222          223333  333333 39999999999999976       


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                       .|.--..+..||.+--+||+.++|      ..||++++.+-+.
T Consensus       533 -Dpkce~A~~tlaq~~lQ~~~i~eA------ielFEksa~lArt  569 (606)
T KOG0547|consen  533 -DPKCEQAYETLAQFELQRGKIDEA------IELFEKSAQLART  569 (606)
T ss_pred             -CchHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHh
Confidence             688888999999999999999887      8999999888653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.88  E-value=3.7e-07  Score=91.58  Aligned_cols=237  Identities=16%  Similarity=0.194  Sum_probs=167.1

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHHH
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAGLY  156 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~La~l~  156 (441)
                      ..+.+++.+-.-+++.--..-| ..  -+..+..||..+...|.|+++++.||+|+.++... +++   ....-.|+.++
T Consensus        97 ~~f~kt~~y~k~~l~lpgt~~~-~~--~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~-~D~~LElqvcv~Lgslf  172 (518)
T KOG1941|consen   97 CEFHKTISYCKTCLGLPGTRAG-QL--GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN-DDAMLELQVCVSLGSLF  172 (518)
T ss_pred             HHhhhHHHHHHHHhcCCCCCcc-cc--cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc-CCceeeeehhhhHHHHH
Confidence            3566777777777764433322 11  23566679999999999999999999999988764 332   12344577888


Q ss_pred             HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHH--HHHHHHHcCCHHHHHHHHHhhhh-----ccC-CchHH
Q 013549          157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAV--KGLVELAHGNLESAESFFKGLQE-----EEG-CTGSA  228 (441)
Q Consensus       157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al--~gl~~~~qG~y~eAe~l~~~aL~-----~~~-~~~~~  228 (441)
                      -++-++++|.-+..++.+|.....-..|+    ...+..++  ...++..+|+..+|.+..+++.+     +.. .+...
T Consensus       173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~----~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc  248 (518)
T KOG1941|consen  173 AQLKDYEKALFFPCKAAELVNSYGLKDWS----LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARC  248 (518)
T ss_pred             HHHHhhhHHhhhhHhHHHHHHhcCcCchh----HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHH
Confidence            88899999999999999998877621221    22222222  45566789999999999999977     111 12334


Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH-----HHcCCHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE-----AHMGNFGDAEEIL  303 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly-----~~qG~y~eAe~l~  303 (441)
                      ...+|.+|+..|+.+.|..-|++|..+......     -+|         .+.++...|..+     ...|.--+|.++-
T Consensus       249 ~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd-----rmg---------qv~al~g~Akc~~~~r~~~k~~~Crale~n  314 (518)
T KOG1941|consen  249 LLCFADIYRSRGDLERAFRRYEQAMGTMASLGD-----RMG---------QVEALDGAAKCLETLRLQNKICNCRALEFN  314 (518)
T ss_pred             HHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh-----hHH---------HHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence            567899999999999999999999998643221     333         233444444332     2333446799999


Q ss_pred             HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh
Q 013549          304 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH  340 (441)
Q Consensus       304 ~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee  340 (441)
                      +|+++|.+.+ |.+| .|......||.+|+.+|.-++
T Consensus       315 ~r~levA~~I-G~K~-~vlK~hcrla~iYrs~gl~d~  349 (518)
T KOG1941|consen  315 TRLLEVASSI-GAKL-SVLKLHCRLASIYRSKGLQDE  349 (518)
T ss_pred             HHHHHHHHHh-hhhH-HHHHHHHHHHHHHHhccchhH
Confidence            9999999875 6666 467788889999999997765

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.87  E-value=5.1e-07  Score=90.58  Aligned_cols=252  Identities=16%  Similarity=0.157  Sum_probs=181.4

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHHH
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAGLY  156 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~La~l~  156 (441)
                      ..+.+|+..+.+.|.-.     .+-.+.-.+|-.+..++.++|+|.+++..---.++.+.+- .+.   ..+.-||+.-+
T Consensus        20 ~~~~~al~~w~~~L~~l-----~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-~ds~~~~ea~lnlar~~   93 (518)
T KOG1941|consen   20 NQTEKALQVWTKVLEKL-----SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-EDSDFLLEAYLNLARSN   93 (518)
T ss_pred             chHHHHHHHHHHHHHHH-----HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            46889999999999754     3444677788889999999999999886654444443321 111   23445566656


Q ss_pred             HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh--ccCCc----hHHHH
Q 013549          157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE--EEGCT----GSAAL  230 (441)
Q Consensus       157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~--~~~~~----~~~a~  230 (441)
                      ..+-++.+++.|..-++.+=+...       ......+....+.+++..|.|+++.+.|++|++  ++...    -.+..
T Consensus        94 e~l~~f~kt~~y~k~~l~lpgt~~-------~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv  166 (518)
T KOG1941|consen   94 EKLCEFHKTISYCKTCLGLPGTRA-------GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV  166 (518)
T ss_pred             HHHHHhhhHHHHHHHHhcCCCCCc-------ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence            666666677776665553321111       111122333468888899999999999999998  22111    13456


Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      .++.++-...+|++|.-+-.+|++|...         ++....+..+ ...++..++..|+.+|+..+|.++.++|.++.
T Consensus       167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s---------~~l~d~~~ky-r~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  167 SLGSLFAQLKDYEKALFFPCKAAELVNS---------YGLKDWSLKY-RAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             hHHHHHHHHHhhhHHhhhhHhHHHHHHh---------cCcCchhHHH-HHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            7899999999999999999999999532         2212233332 34568899999999999999999999999987


Q ss_pred             HHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549          311 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP  362 (441)
Q Consensus       311 e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~  362 (441)
                      -+.  -+-|.-+..+..+|.+|+..|+.|.|      -+-|++|..++...+
T Consensus       237 l~~--Gdra~~arc~~~~aDIyR~~gd~e~a------f~rYe~Am~~m~~~g  280 (518)
T KOG1941|consen  237 LQH--GDRALQARCLLCFADIYRSRGDLERA------FRRYEQAMGTMASLG  280 (518)
T ss_pred             HHh--CChHHHHHHHHHHHHHHHhcccHhHH------HHHHHHHHHHHhhhh
Confidence            754  35678889999999999999999987      788999999986544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.86  E-value=9.8e-08  Score=89.94  Aligned_cols=121  Identities=14%  Similarity=0.115  Sum_probs=102.7

Q ss_pred             HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549          204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT  283 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al  283 (441)
                      ..++.+++...+++++...+........+|.+|..+|+|++|...|++|+.+.   -.                 ....+
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~-----------------~~~~~  110 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GE-----------------NAELY  110 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-----------------CHHHH
Confidence            36778899999999999877788888999999999999999999999999981   11                 12457


Q ss_pred             HHHHHH-HHHcCC--HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          284 FALGQL-EAHMGN--FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       284 ~nLg~l-y~~qG~--y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      .++|.+ |...|+  +++|.+++++++.+        +|.-..++.+||..+..+|+|++|      ...|++++++.
T Consensus       111 ~~lA~aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~A------i~~~~~aL~l~  174 (198)
T PRK10370        111 AALATVLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQA------IELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC
Confidence            899996 578888  59999999999974        455567899999999999999987      89999998885

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.86  E-value=6.5e-08  Score=88.59  Aligned_cols=117  Identities=18%  Similarity=0.247  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      ....++|.++..+|+|++|..+|++++.+.   ..     .       ++  ....+.++|.+|..+|+|++|+.+|+++
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~-----~-------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLE---ED-----P-------ND--RSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hc-----c-------ch--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345677889999999999999999999882   11     0       01  1245789999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh-hhhHHHHHHHHHHHHHhhc-CCCCCcch
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS-SALLIQEGLYRRALEFLKA-PPLESEGV  368 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA-~~~~~Ae~ly~rAL~i~~~-~~~~~~~~  368 (441)
                      +.+        +|.....+.++|.+|..+|+...+ ..+..|...|++|+++++. ...++.+.
T Consensus        99 l~~--------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         99 LEL--------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHh--------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            986        566677788899999888775443 1233457888888888753 33344433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.1e-06  Score=89.41  Aligned_cols=270  Identities=16%  Similarity=0.101  Sum_probs=150.3

Q ss_pred             ccCCCchHHHHHHHH-HHHHhhhhccChhhHHHHHHH--HHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHH
Q 013549           53 INGLNSNPVVLQMIN-YALSHARSQKSDESYSQGMLV--LEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIE  129 (441)
Q Consensus        53 ~~g~~h~~~a~~m~n-~a~~~~~~~~~~g~y~eAl~~--~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e  129 (441)
                      |.-|+|.+.-..-+. ||..+      .+++..|.+.  +-.-+...        |.--..+..+|.+++..|++++|+.
T Consensus       188 ~~~~~~~dwls~wika~Aq~~------~~~hs~a~~t~l~le~~~~l--------r~NvhLl~~lak~~~~~Gdn~~a~~  253 (564)
T KOG1174|consen  188 ATVPDHFDWLSKWIKALAQMF------NFKHSDASQTFLMLHDNTTL--------RCNEHLMMALGKCLYYNGDYFQAED  253 (564)
T ss_pred             eecCCCccHHHHHHHHHHHHH------hcccchhhhHHHHHHhhccC--------CccHHHHHHHhhhhhhhcCchHHHH
Confidence            356788887766665 66665      2334444443  32222211        1223457778889999999999999


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC-------cchh---hhhhHhH------
Q 013549          130 KLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE-------NYKT---YGAVNSR------  193 (441)
Q Consensus       130 ~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~-------~~~~---~~~l~~~------  193 (441)
                      .|++++-+.+-.+    .++.-.+.+..+-|++..-..+-...+.+....-..       .|..   ..++..-      
T Consensus       254 ~Fe~~~~~dpy~i----~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~  329 (564)
T KOG1174|consen  254 IFSSTLCANPDNV----EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS  329 (564)
T ss_pred             HHHHHhhCChhhh----hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence            9998876655432    233334444445555555444444443332111000       0000   0111111      


Q ss_pred             ------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549          194 ------ANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT  267 (441)
Q Consensus       194 ------a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~  267 (441)
                            +..++|.+.+..||.++|.-.|+.|..-.++....-..+-..|..+|++.||.-+-.-++..+...-.  .-.-
T Consensus       330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~--~LtL  407 (564)
T KOG1174|consen  330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR--SLTL  407 (564)
T ss_pred             CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh--hhhh
Confidence                  11245666678889999999998887743333222222333344455555554444444333211100  0000


Q ss_pred             ccc--cccch----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 013549          268 LGS--CNMAL----------------EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLA  329 (441)
Q Consensus       268 lg~--~~~~~----------------~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa  329 (441)
                      +|+  +-..|                +...+.+.+.+|.+...-|+++++..+++++|.++-..         ...+.||
T Consensus       408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~---------~LH~~Lg  478 (564)
T KOG1174|consen  408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV---------NLHNHLG  478 (564)
T ss_pred             hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc---------HHHHHHH
Confidence            110  00000                00134577899999999999999999999999987432         3456789


Q ss_pred             HHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          330 LMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       330 ~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      .++..+..+.+|      ...|..||.+
T Consensus       479 d~~~A~Ne~Q~a------m~~y~~ALr~  500 (564)
T KOG1174|consen  479 DIMRAQNEPQKA------MEYYYKALRQ  500 (564)
T ss_pred             HHHHHhhhHHHH------HHHHHHHHhc
Confidence            999999988877      6777777655

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.76  E-value=8.3e-06  Score=89.63  Aligned_cols=295  Identities=16%  Similarity=0.153  Sum_probs=183.7

Q ss_pred             CCccccCCCchHH-HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHH
Q 013549           49 NGNRINGLNSNPV-VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEA  127 (441)
Q Consensus        49 ~~~~~~g~~h~~~-a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA  127 (441)
                      -|-+..+..-+++ +.+|...|...  +  ..|++.+|+.++..+..        ..|.....+..||.+|..+|+-.++
T Consensus       125 ~~~~~r~~~~l~~~l~~ll~eAN~l--f--arg~~eeA~~i~~EvIk--------qdp~~~~ay~tL~~IyEqrGd~eK~  192 (895)
T KOG2076|consen  125 RGRRSRGKSKLAPELRQLLGEANNL--F--ARGDLEEAEEILMEVIK--------QDPRNPIAYYTLGEIYEQRGDIEKA  192 (895)
T ss_pred             cCCCCCcccccCHHHHHHHHHHHHH--H--HhCCHHHHHHHHHHHHH--------hCccchhhHHHHHHHHHHcccHHHH
Confidence            3444455555555 77888888776  4  35999999999999985        4556677899999999999999888


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC
Q 013549          128 IEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN  207 (441)
Q Consensus       128 ~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~  207 (441)
                      .-..--|-.+.+...    .-|..++-+-.++|.+.+|.-+|.++++.-    |..|   .-+..+     ...|...|+
T Consensus       193 l~~~llAAHL~p~d~----e~W~~ladls~~~~~i~qA~~cy~rAI~~~----p~n~---~~~~er-----s~L~~~~G~  256 (895)
T KOG2076|consen  193 LNFWLLAAHLNPKDY----ELWKRLADLSEQLGNINQARYCYSRAIQAN----PSNW---ELIYER-----SSLYQKTGD  256 (895)
T ss_pred             HHHHHHHHhcCCCCh----HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----Ccch---HHHHHH-----HHHHHHhCh
Confidence            877666654444332    356667777778888888888888876332    1111   111111     112223344


Q ss_pred             H---------------------------------------HHHHHHHHhhhhcc--CCchHHHHHHHHHHHHccChHHHH
Q 013549          208 L---------------------------------------ESAESFFKGLQEEE--GCTGSAALSYGEYLHATRNFLLAK  246 (441)
Q Consensus       208 y---------------------------------------~eAe~l~~~aL~~~--~~~~~~a~~~a~~~~~qG~y~eA~  246 (441)
                      +                                       +.|.+.++.++..+  .........+++++.....|+.|.
T Consensus       257 ~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~  336 (895)
T KOG2076|consen  257 LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKAL  336 (895)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhh
Confidence            4                                       44444444444411  111223345666776666677666


Q ss_pred             HHHHHHHHHHHhhcccC-----------------CCCC---------ccccccch-------------------hHHHHH
Q 013549          247 KFYQKVIEVLAEQKDFS-----------------DMNT---------LGSCNMAL-------------------EEVALA  281 (441)
Q Consensus       247 ~ly~rAL~i~~~~~~~~-----------------~~~~---------lg~~~~~~-------------------~~~~~~  281 (441)
                      ..-..--.+ +..+..+                 .+..         +..|..|.                   ..-...
T Consensus       337 ~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~d  415 (895)
T KOG2076|consen  337 MKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVD  415 (895)
T ss_pred             HHHHHHhcc-ccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHH
Confidence            554443331 0000000                 0000         00011110                   001122


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH--HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v--a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      -+.+++.+|..-|+|++|.++|.+...         ||..  +.+..++|..|..+|.|++|      ...|.++|..  
T Consensus       416 L~~d~a~al~~~~~~~~Al~~l~~i~~---------~~~~~~~~vw~~~a~c~~~l~e~e~A------~e~y~kvl~~--  478 (895)
T KOG2076|consen  416 LYLDLADALTNIGKYKEALRLLSPITN---------REGYQNAFVWYKLARCYMELGEYEEA------IEFYEKVLIL--  478 (895)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHhc---------CccccchhhhHHHHHHHHHHhhHHHH------HHHHHHHHhc--
Confidence            367899999999999999999998763         3333  55888999999999999987      7889998765  


Q ss_pred             cCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          360 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       360 ~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                        .|+|-++..+   |+.++..+|+.++|+..-.+
T Consensus       479 --~p~~~D~Ri~---Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  479 --APDNLDARIT---LASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             --CCCchhhhhh---HHHHHHhcCCHHHHHHHHhc
Confidence              3666664433   56788999999999886533

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.76  E-value=3.1e-07  Score=84.09  Aligned_cols=113  Identities=12%  Similarity=0.102  Sum_probs=86.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhhccCC---chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549          196 AVKGLVELAHGNLESAESFFKGLQEEEGC---TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN  272 (441)
Q Consensus       196 al~gl~~~~qG~y~eAe~l~~~aL~~~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~  272 (441)
                      ...|.++...|+|++|..+|++++...+.   ...+..++|.++...|+|++|+.+|++|+.+.   ..     .     
T Consensus        39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-----~-----  105 (172)
T PRK02603         39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PK-----Q-----  105 (172)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-----c-----
Confidence            35678888999999999999999983222   24567888999999999999999999999982   11     1     


Q ss_pred             cchhHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 013549          273 MALEEVALAATFALGQLEAH-------MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCL  328 (441)
Q Consensus       273 ~~~~~~~~~al~nLg~ly~~-------qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nL  328 (441)
                             ..++.++|.+|..       +|++++|+..|.+|++++++.+..++..+-.+++.+
T Consensus       106 -------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  161 (172)
T PRK02603        106 -------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL  161 (172)
T ss_pred             -------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Confidence                   1234455655555       567999999999999999999998888755554433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.74  E-value=4.6e-07  Score=80.70  Aligned_cols=120  Identities=17%  Similarity=0.198  Sum_probs=95.5

Q ss_pred             HcCCHHHHHHHHHhhhhccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHH
Q 013549          204 AHGNLESAESFFKGLQEEEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL  280 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~  280 (441)
                      ..|+++.+...+++.+...+.+   ..+.+.+|.++..+|+|++|...|+++++-   ...    +.          +..
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d----~~----------l~~   85 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---APD----PE----------LKP   85 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCC----HH----------HHH
Confidence            6899999999999999865555   344567899999999999999999999885   211    01          122


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHH
Q 013549          281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL  355 (441)
Q Consensus       281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL  355 (441)
                      .+...||.++..+|+|++|...+++         .++.+.......-+|.+|..+|++++|      ...|++||
T Consensus        86 ~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~~~~~~~~Gdi~~~~g~~~~A------~~~y~~Al  145 (145)
T PF09976_consen   86 LARLRLARILLQQGQYDEALATLQQ---------IPDEAFKALAAELLGDIYLAQGDYDEA------RAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcchHHHHHHHHHHHHHHCCCHHHH------HHHHHHhC
Confidence            3456899999999999999999855         345566677788899999999999997      88898885

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.73  E-value=1.5e-06  Score=81.86  Aligned_cols=103  Identities=12%  Similarity=0.131  Sum_probs=84.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH-HHccC--hHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549          196 AVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL-HATRN--FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN  272 (441)
Q Consensus       196 al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~-~~qG~--y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~  272 (441)
                      ..+|.++...|+|++|...|++++...+....+..++|.++ ...|+  +++|..++++++.+   .-            
T Consensus        77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~---dP------------  141 (198)
T PRK10370         77 ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL---DA------------  141 (198)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---CC------------
Confidence            35688889999999999999999997777888889999864 67788  59999999999998   11            


Q ss_pred             cchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549          273 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG  322 (441)
Q Consensus       273 ~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va  322 (441)
                         .  ...++.+||..+..+|+|++|+.+|+++|++.    +++-+...
T Consensus       142 ---~--~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~----~~~~~r~~  182 (198)
T PRK10370        142 ---N--EVTALMLLASDAFMQADYAQAIELWQKVLDLN----SPRVNRTQ  182 (198)
T ss_pred             ---C--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCccHHH
Confidence               1  13468999999999999999999999998764    34444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=1.9e-06  Score=90.94  Aligned_cols=240  Identities=11%  Similarity=0.135  Sum_probs=152.7

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHH-HH-HHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVA-AM-EALAGL  155 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~-al-~~La~l  155 (441)
                      .+|+|++|+..-.+.|.+.     ++.++   .+..--..+...++|++|+.+.+.-       .+..+. .. +.-+.+
T Consensus        24 ~~~e~e~a~k~~~Kil~~~-----pdd~~---a~~cKvValIq~~ky~~ALk~ikk~-------~~~~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIV-----PDDED---AIRCKVVALIQLDKYEDALKLIKKN-------GALLVINSFFFEKAYC   88 (652)
T ss_pred             cchHHHHHHHHHHHHHhcC-----CCcHh---hHhhhHhhhhhhhHHHHHHHHHHhc-------chhhhcchhhHHHHHH
Confidence            5689999999999999755     34333   3444445677899999999655542       111111 11 244677


Q ss_pred             HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCch--HHHHHH-
Q 013549          156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTG--SAALSY-  232 (441)
Q Consensus       156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~--~~a~~~-  232 (441)
                      .+++++.++|...++-+    ....           ....-+.+-+.+.+|+|++|...|+..+..+....  ..-.|+ 
T Consensus        89 ~Yrlnk~Dealk~~~~~----~~~~-----------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~  153 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLKGL----DRLD-----------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL  153 (652)
T ss_pred             HHHcccHHHHHHHHhcc----cccc-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            88889888876655411    1111           11122445556689999999999999877322221  111121 


Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      +..-..++     -  ..+++.+           .       |+ -+-..++|.|..+...|+|++|++++++|+.|..+
T Consensus       154 a~~a~l~~-----~--~~q~v~~-----------v-------~e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e  207 (652)
T KOG2376|consen  154 AVAAALQV-----Q--LLQSVPE-----------V-------PE-DSYELLYNTACILIENGKYNQAIELLEKALRICRE  207 (652)
T ss_pred             HHHHhhhH-----H--HHHhccC-----------C-------Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            11111111     0  1111111           1       11 02245789999999999999999999999999999


Q ss_pred             hhCCCCc-------hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHh
Q 013549          313 LFGSHHP-------KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR  382 (441)
Q Consensus       313 ~lG~~HP-------~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~  382 (441)
                      .|-.+.-       .+..+-.-||.++..+|+-+||      ...|...+   +....|.|..+...||+-.+-..+
T Consensus       208 ~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea------~~iy~~~i---~~~~~D~~~~Av~~NNLva~~~d~  275 (652)
T KOG2376|consen  208 KLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA------SSIYVDII---KRNPADEPSLAVAVNNLVALSKDQ  275 (652)
T ss_pred             hhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHH---HhcCCCchHHHHHhcchhhhcccc
Confidence            8754433       3777888899999999999987      55676553   334578888898999987765444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.68  E-value=9e-07  Score=99.27  Aligned_cols=241  Identities=10%  Similarity=0.027  Sum_probs=149.3

Q ss_pred             CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549           55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      ++--|+.......+...+    +.++++++|+++.+.++.        .+|.....+.-+|.++.+++++++|.-.  ++
T Consensus        24 ~~~~p~n~~a~~~Li~~~----~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~   89 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAY----KSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSNLL--NL   89 (906)
T ss_pred             ccCCcchHHHHHHHHHHH----HhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhhhh--hh
Confidence            344444445555555554    235677788888777774        4666667777777777778877777655  44


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      +++....                  .++...+.+++..++.....             ++.--++.+|...|++++|...
T Consensus        90 l~~~~~~------------------~~~~~ve~~~~~i~~~~~~k-------------~Al~~LA~~Ydk~g~~~ka~~~  138 (906)
T PRK14720         90 IDSFSQN------------------LKWAIVEHICDKILLYGENK-------------LALRTLAEAYAKLNENKKLKGV  138 (906)
T ss_pred             hhhcccc------------------cchhHHHHHHHHHHhhhhhh-------------HHHHHHHHHHHHcCChHHHHHH
Confidence            3333221                  12222222232222211111             1111246677789999999999


Q ss_pred             HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC--ccccccchhHHHH------------
Q 013549          215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT--LGSCNMALEEVAL------------  280 (441)
Q Consensus       215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~--lg~~~~~~~~~~~------------  280 (441)
                      |+++|.-.+..+.++++||-.|..+ ++++|+.||.+|+..+-..+....-..  ..-+...|+.+..            
T Consensus       139 yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~  217 (906)
T PRK14720        139 WERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR  217 (906)
T ss_pred             HHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence            9999996677788899999999988 999999999999988654433110000  0001111221111            


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHH
Q 013549          281 ------AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA  354 (441)
Q Consensus       281 ------~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rA  354 (441)
                            ..+.-|=.-|....+|+++.+.++++|++..+    +++    ....|+..|.  ++|..       .++++..
T Consensus       218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~----n~~----a~~~l~~~y~--~kY~~-------~~~~ee~  280 (906)
T PRK14720        218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK----NNK----AREELIRFYK--EKYKD-------HSLLEDY  280 (906)
T ss_pred             ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc----chh----hHHHHHHHHH--HHccC-------cchHHHH
Confidence                  11223337888999999999999999998765    332    3788888887  67765       5666666


Q ss_pred             HHHh
Q 013549          355 LEFL  358 (441)
Q Consensus       355 L~i~  358 (441)
                      |.+-
T Consensus       281 l~~s  284 (906)
T PRK14720        281 LKMS  284 (906)
T ss_pred             HHHh
Confidence            6664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.4e-06  Score=88.77  Aligned_cols=207  Identities=16%  Similarity=0.171  Sum_probs=136.9

Q ss_pred             chHHHHHHHHHHHHhhhhc------------------------------cChhhHHHHHHHHHHhhhccccCCCCCchhH
Q 013549           58 SNPVVLQMINYALSHARSQ------------------------------KSDESYSQGMLVLEQCLSTQPSDGQLAESWR  107 (441)
Q Consensus        58 h~~~a~~m~n~a~~~~~~~------------------------------~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~  107 (441)
                      -|.+..+|.-||+++++..                              +..-+|..|+.+-+++....++    .||. 
T Consensus       262 dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r----~~~a-  336 (564)
T KOG1174|consen  262 NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR----NHEA-  336 (564)
T ss_pred             ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc----cchH-
Confidence            4778889999999885532                              0112344444444444432211    2222 


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                         |.-=|.++...|+..+|+-.|+.|+.+++.-    ...+..|...|..+|+.-+|...++.....+.+.-       
T Consensus       337 ---lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r----L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA-------  402 (564)
T KOG1174|consen  337 ---LILKGRLLIALERHTQAVIAFRTAQMLAPYR----LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA-------  402 (564)
T ss_pred             ---HHhccHHHHhccchHHHHHHHHHHHhcchhh----HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch-------
Confidence               4445666666777777777776666655432    23566777777777877777777766655443321       


Q ss_pred             hhhHhHHHHHHH-HHHHH-cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549          188 GAVNSRANAVKG-LVELA-HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM  265 (441)
Q Consensus       188 ~~l~~~a~al~g-l~~~~-qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~  265 (441)
                      .++     .+.| .+..- ----++|.++++++|..+|....+.+-+|+++..-|+++.++.+.+++|.++.   .    
T Consensus       403 ~~L-----tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---D----  470 (564)
T KOG1174|consen  403 RSL-----TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP---D----  470 (564)
T ss_pred             hhh-----hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc---c----
Confidence            111     1233 22221 11238899999999997776767888899999999999999999999999841   1    


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                           |+         -.+-||+++..+..|.+|.++|..||.+
T Consensus       471 -----~~---------LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  471 -----VN---------LHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             -----cH---------HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                 11         1257999999999999999999999975

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.68  E-value=4.9e-07  Score=78.64  Aligned_cols=92  Identities=15%  Similarity=0.138  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      +.+..|.++..+|+.++|+++|++|++.   ...       +       .....++.+||..|..+|++++|+.++++++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~-------~-------~~~~~a~i~lastlr~LG~~deA~~~L~~~~   65 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA---GLS-------G-------ADRRRALIQLASTLRNLGRYDEALALLEEAL   65 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC-------c-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567888999999999999999999985   111       1       1133578899999999999999999999987


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      .-+     |+.+-....-..+|.+...+|++++|
T Consensus        66 ~~~-----p~~~~~~~l~~f~Al~L~~~gr~~eA   94 (120)
T PF12688_consen   66 EEF-----PDDELNAALRVFLALALYNLGRPKEA   94 (120)
T ss_pred             HHC-----CCccccHHHHHHHHHHHHHCCCHHHH
Confidence            421     22122555556688999999999988

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.64  E-value=4.2e-07  Score=78.89  Aligned_cols=94  Identities=12%  Similarity=0.071  Sum_probs=80.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..+..+..+|+|++|..+|++++...+..+.+..++|.++..+|+|++|..+|++++.+.   .     .          
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p-----~----------   83 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---P-----D----------   83 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C-----C----------
Confidence            456777899999999999999999766677788899999999999999999999999871   1     1          


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                        ....+.++|.+|..+|++++|.+.|++++...
T Consensus        84 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        84 --DPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence              12356899999999999999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.61  E-value=8.5e-07  Score=74.38  Aligned_cols=104  Identities=15%  Similarity=0.192  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .+..+.|..+..+|+|++|...|++++...   .+   ++ .          ...+...+|.++...|+|++|..+|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~---~~-~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~   65 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PK---ST-Y----------APNAHYWLGEAYYAQGKYADAAKAFLAV   65 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CC---cc-c----------cHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            345677888899999999999999998761   11   11 1          1235678999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +..     .|+||.+..++.++|.+|..+|++++|      ...|+++++..
T Consensus        66 ~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~~~~~~  106 (119)
T TIGR02795        66 VKK-----YPKSPKAPDALLKLGMSLQELGDKEKA------KATLQQVIKRY  106 (119)
T ss_pred             HHH-----CCCCCcccHHHHHHHHHHHHhCChHHH------HHHHHHHHHHC
Confidence            965     378888888999999999999999887      88899887773

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN02789 farnesyltranstransferase

Probab=98.58  E-value=2.8e-05  Score=78.75  Aligned_cols=206  Identities=16%  Similarity=0.047  Sum_probs=146.7

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY  156 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG-~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~  156 (441)
                      ..+++.+|+.++++++.+        +|.-.++.+..+.++...| ++.+|+..+.+++...+...    .+++..+.+.
T Consensus        49 ~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l  116 (320)
T PLN02789         49 SDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLA  116 (320)
T ss_pred             cCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHH
Confidence            567899999999999974        5666788999999999999 68999999999987766542    2577777777


Q ss_pred             HhcCCc--chhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHH
Q 013549          157 LQLGQD--DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGE  234 (441)
Q Consensus       157 ~~~G~~--~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~  234 (441)
                      ..+|++  .++..++++++++-.       .+....     .-.+.+....|+|++|..++.++|...+....+-+..+.
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dp-------kNy~AW-----~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~  184 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDA-------KNYHAW-----SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYF  184 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCc-------ccHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHH
Confidence            777764  455666666653321       111223     234555667899999999999999966555556566666


Q ss_pred             HHHHc---cCh----HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH----cCCHHHHHHHH
Q 013549          235 YLHAT---RNF----LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEIL  303 (441)
Q Consensus       235 ~~~~q---G~y----~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~----qG~y~eAe~l~  303 (441)
                      ++...   |++    ++++.+..++|.+   .-     .     |       -.+.+.++.++..    .+++.+|.+.+
T Consensus       185 vl~~~~~l~~~~~~~e~el~y~~~aI~~---~P-----~-----N-------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~  244 (320)
T PLN02789        185 VITRSPLLGGLEAMRDSELKYTIDAILA---NP-----R-----N-------ESPWRYLRGLFKDDKEALVSDPEVSSVC  244 (320)
T ss_pred             HHHhccccccccccHHHHHHHHHHHHHh---CC-----C-----C-------cCHHHHHHHHHhcCCcccccchhHHHHH
Confidence            66655   444    4677777888877   11     1     1       1246788888888    45677788777


Q ss_pred             HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549          304 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNK  335 (441)
Q Consensus       304 ~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q  335 (441)
                      .+++.        ..|...-.|.-|+.+|...
T Consensus       245 ~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        245 LEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            77665        3577777888899999853

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=4.4e-06  Score=88.09  Aligned_cols=199  Identities=15%  Similarity=0.093  Sum_probs=149.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhH
Q 013549          112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVN  191 (441)
Q Consensus       112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~  191 (441)
                      ...|..+.+.|+..+|.-.|+.++.-.+.+.    .+|--|+-.+-+-++...|..-+++|+++-       +.+.+.+.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha----eAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P~NleaLm  357 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA----EAWQKLGITQAENENEQNAISALRRCLELD-------PTNLEALM  357 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHH----HHHHHhhhHhhhccchHHHHHHHHHHHhcC-------CccHHHHH
Confidence            4568888999999999999999987776653    477778888888888888888888887442       11112221


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----------------------------------------ccC--CchHH
Q 013549          192 SRANAVKGLVELAHGNLESAESFFKGLQE-----------------------------------------EEG--CTGSA  228 (441)
Q Consensus       192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----------------------------------------~~~--~~~~~  228 (441)
                      .     +++-|..+|--.+|..++.+-+.                                         ..+  ..+.+
T Consensus       358 a-----LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv  432 (579)
T KOG1125|consen  358 A-----LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV  432 (579)
T ss_pred             H-----HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence            1     13334456666666666665544                                         111  22344


Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      -..+|-+|+.-|+|++|.++|+.||..    +              |..  -..-|-||.++..-.+..||..-|.|||+
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~v----~--------------Pnd--~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQV----K--------------PND--YLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHhc----C--------------Cch--HHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            456788999999999999999999987    1              110  12347899999999999999999999999


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      ++        |....+-.|||..|..+|-|+||      .+.|-.||.+.+.
T Consensus       493 Lq--------P~yVR~RyNlgIS~mNlG~ykEA------~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  493 LQ--------PGYVRVRYNLGISCMNLGAYKEA------VKHLLEALSMQRK  530 (579)
T ss_pred             cC--------CCeeeeehhhhhhhhhhhhHHHH------HHHHHHHHHhhhc
Confidence            86        88999999999999999999887      8899999999854

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.56  E-value=1.9e-06  Score=83.30  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=123.2

Q ss_pred             HHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh
Q 013549           66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR  145 (441)
Q Consensus        66 ~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~  145 (441)
                      .+++..+.    ..|+=+++..+..+++-        .||.-...++..|......|+|.+|+..++++..+.+.-    
T Consensus        70 ~~~a~a~~----~~G~a~~~l~~~~~~~~--------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d----  133 (257)
T COG5010          70 AKLATALY----LRGDADSSLAVLQKSAI--------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD----  133 (257)
T ss_pred             HHHHHHHH----hcccccchHHHHhhhhc--------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC----
Confidence            55666552    23555566666666552        466666677779999999999999999999998887643    


Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCc
Q 013549          146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCT  225 (441)
Q Consensus       146 ~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~  225 (441)
                      ...++.++..|.+.|+.++|..-|.+++++..+...            ..+++|..+.-+|+++.|+.++.++....+..
T Consensus       134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~------------~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad  201 (257)
T COG5010         134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS------------IANNLGMSLLLRGDLEDAETLLLPAYLSPAAD  201 (257)
T ss_pred             hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch------------hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence            247788999999999999999999999988765542            12345777778999999999999998866666


Q ss_pred             hHHHHHHHHHHHHccChHHHHHHHH
Q 013549          226 GSAALSYGEYLHATRNFLLAKKFYQ  250 (441)
Q Consensus       226 ~~~a~~~a~~~~~qG~y~eA~~ly~  250 (441)
                      ..+..|++.+...+|++.+|+..-.
T Consensus       202 ~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         202 SRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             hHHHHHHHHHHhhcCChHHHHhhcc
Confidence            6788899999999999999997543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=7.7e-06  Score=81.25  Aligned_cols=205  Identities=15%  Similarity=0.143  Sum_probs=143.9

Q ss_pred             HHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHH
Q 013549           68 YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVA  147 (441)
Q Consensus        68 ~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~  147 (441)
                      ++.++ |   +.|.-|+||.+.+--+. ....   .-.....++..||.-|...|=|+.|+.+|..-.+..+-    ...
T Consensus        75 LGnLf-R---sRGEvDRAIRiHQ~L~~-spdl---T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef----a~~  142 (389)
T COG2956          75 LGNLF-R---SRGEVDRAIRIHQTLLE-SPDL---TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF----AEG  142 (389)
T ss_pred             HHHHH-H---hcchHHHHHHHHHHHhc-CCCC---chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh----hHH
Confidence            45554 3   56899999999865553 2221   22346788999999999999999999999986543221    123


Q ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchH
Q 013549          148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGS  227 (441)
Q Consensus       148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~  227 (441)
                      ++-.|..+|.+.-++.+|...+.+...+-....    .  ..+... ..=+...+...-+.+.|..++.+++...+.-..
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~--~eIAqf-yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR  215 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----R--VEIAQF-YCELAQQALASSDVDRARELLKKALQADKKCVR  215 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----h--hHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence            677788999888888777776666543322211    1  001000 001233334577899999999999995443345


Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      +...+|.++..+|+|..|.+-++++++-   .     +.+++           -.+.-|-..|..+|+.++.+..+.++.
T Consensus       216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQ---n-----~~yl~-----------evl~~L~~~Y~~lg~~~~~~~fL~~~~  276 (389)
T COG2956         216 ASIILGRVELAKGDYQKAVEALERVLEQ---N-----PEYLS-----------EVLEMLYECYAQLGKPAEGLNFLRRAM  276 (389)
T ss_pred             hhhhhhHHHHhccchHHHHHHHHHHHHh---C-----hHHHH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            6677899999999999999999998876   2     22332           245678999999999999999999998


Q ss_pred             HHH
Q 013549          308 TKT  310 (441)
Q Consensus       308 ~i~  310 (441)
                      +.+
T Consensus       277 ~~~  279 (389)
T COG2956         277 ETN  279 (389)
T ss_pred             Hcc
Confidence            765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.53  E-value=2.5e-06  Score=71.52  Aligned_cols=104  Identities=18%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                      .+..+..+|+|++|+..|++++...+..   ..+...+|.++...|+|++|..+|++++...   .+   ++.       
T Consensus         8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~---~~~-------   74 (119)
T TIGR02795         8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PK---SPK-------   74 (119)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CC---CCc-------
Confidence            4666778999999999999999844332   4566778999999999999999999999862   11   111       


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHH
Q 013549          275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV  323 (441)
Q Consensus       275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~  323 (441)
                          ...++.++|.+|..+|++++|+.+|.+++..     .|+++.+-.
T Consensus        75 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~  114 (119)
T TIGR02795        75 ----APDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKL  114 (119)
T ss_pred             ----ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHH
Confidence                1235789999999999999999999999987     355655433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.53  E-value=2.3e-06  Score=76.12  Aligned_cols=122  Identities=21%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .++++.+...+++...-.     ++.+........+|..+..+|+|++|++.|+.++...+.. .....+...|+.+++.
T Consensus        24 ~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~   97 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRLARILLQ   97 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHH
Confidence            567777777777777533     5556678888999999999999999999999987654221 1122234445666666


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQ  219 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL  219 (441)
                      +|++++|...++.       ..+      ......+..+.|.++..+|++++|...|+++|
T Consensus        98 ~~~~d~Al~~L~~-------~~~------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   98 QGQYDEALATLQQ-------IPD------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             cCCHHHHHHHHHh-------ccC------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            6666555544322       111      01112223345555555666666666555553

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=2.4e-06  Score=87.11  Aligned_cols=274  Identities=16%  Similarity=0.086  Sum_probs=183.2

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      +-+|.+|+..|..|....     +   +-+.-+.|-+.+|...|+|++|.-.+++.+.+...-.-    .--....++.+
T Consensus        62 ~k~Y~nal~~yt~Ai~~~-----p---d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k----~~~r~~~c~~a  129 (486)
T KOG0550|consen   62 QKTYGNALKNYTFAIDMC-----P---DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK----GQLREGQCHLA  129 (486)
T ss_pred             HhhHHHHHHHHHHHHHhC-----c---cchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc----cccchhhhhhh
Confidence            447999999999999744     3   33888999999999999999999999988766543210    11112233333


Q ss_pred             cCCcchhHHHHH--------HHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHH
Q 013549          159 LGQDDTSSVVAD--------KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAAL  230 (441)
Q Consensus       159 ~G~~~~A~~l~~--------~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~  230 (441)
                      ++.-.+|+..++        +++..+++.-+.+..  +.-..+++.+..-.+..+|+|++|...--..++.......+..
T Consensus       130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~--~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~  207 (486)
T KOG0550|consen  130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSR--EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY  207 (486)
T ss_pred             hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccC--CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence            343333333322        122222222222211  1223455556666667899999999988888885444444444


Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      --+.+++..++.+.|...|+++|..-      +++...+...+-|..  +-..-.=|+-...+|+|.+|.+.|+.||.|-
T Consensus       208 vrg~~~yy~~~~~ka~~hf~qal~ld------pdh~~sk~~~~~~k~--le~~k~~gN~~fk~G~y~~A~E~Yteal~id  279 (486)
T KOG0550|consen  208 VRGLCLYYNDNADKAINHFQQALRLD------PDHQKSKSASMMPKK--LEVKKERGNDAFKNGNYRKAYECYTEALNID  279 (486)
T ss_pred             hcccccccccchHHHHHHHhhhhccC------hhhhhHHhHhhhHHH--HHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence            45778888999999999999999772      122222222222221  2234466888899999999999999999975


Q ss_pred             HHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHH
Q 013549          311 EELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL  389 (441)
Q Consensus       311 e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal  389 (441)
                           |+|-. .+..|.|.|.++.+.|+.++|      ..-...|++|-       +.....+.-.+.+++..+.|.+|.
T Consensus       280 -----P~n~~~naklY~nra~v~~rLgrl~ea------isdc~~Al~iD-------~syikall~ra~c~l~le~~e~AV  341 (486)
T KOG0550|consen  280 -----PSNKKTNAKLYGNRALVNIRLGRLREA------ISDCNEALKID-------SSYIKALLRRANCHLALEKWEEAV  341 (486)
T ss_pred             -----ccccchhHHHHHHhHhhhcccCCchhh------hhhhhhhhhcC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 44544 567899999999999999887      77888888873       234456666778888888888876


Q ss_pred             HHh
Q 013549          390 SVQ  392 (441)
Q Consensus       390 ~~~  392 (441)
                      .-+
T Consensus       342 ~d~  344 (486)
T KOG0550|consen  342 EDY  344 (486)
T ss_pred             HHH
Confidence            643

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.9e-05  Score=82.75  Aligned_cols=196  Identities=13%  Similarity=0.143  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549          107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT  186 (441)
Q Consensus       107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~  186 (441)
                      .+.-.-++|+..+..-++..|+.+|..++.+. ...+    -+++.+.+|...|.+.+....++++++--..    .+..
T Consensus       223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it----~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre----~rad  293 (539)
T KOG0548|consen  223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDIT----YLNNIAAVYLERGKYAECIELCEKAVEVGRE----LRAD  293 (539)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhH----HHHHHHHHHHhccHHHHhhcchHHHHHHhHH----HHHH
Confidence            56778899999999999999999999999887 3332    4577888999999998877777765432111    1111


Q ss_pred             hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHH---------------------------HHHHHHHc
Q 013549          187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALS---------------------------YGEYLHAT  239 (441)
Q Consensus       187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~---------------------------~a~~~~~q  239 (441)
                       ..+..++.+..|.+|...|+|+.|..+|+++|..+.. ++....                           =|+-+...
T Consensus       294 -~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~  371 (539)
T KOG0548|consen  294 -YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK  371 (539)
T ss_pred             -HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc
Confidence             1223344455677888899999999999999984332 111111                           13344455


Q ss_pred             cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549          240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP  319 (441)
Q Consensus       240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP  319 (441)
                      |+|.+|+..|-+||..     .             |+  ....++|.|..|...|.|.+|..-.+.+++.        ||
T Consensus       372 gdy~~Av~~YteAIkr-----~-------------P~--Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p  423 (539)
T KOG0548|consen  372 GDYPEAVKHYTEAIKR-----D-------------PE--DARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DP  423 (539)
T ss_pred             cCHHHHHHHHHHHHhc-----C-------------Cc--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------Cc
Confidence            5555555555554432     0             00  0123455555555555555555555555544        55


Q ss_pred             hHHHHHHHHHHHHHHhhchhhh
Q 013549          320 KVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       320 ~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      .....+..=|.++..+.+|++|
T Consensus       424 ~~~kgy~RKg~al~~mk~ydkA  445 (539)
T KOG0548|consen  424 NFIKAYLRKGAALRAMKEYDKA  445 (539)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            5555554445555554444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=6.7e-05  Score=81.89  Aligned_cols=279  Identities=15%  Similarity=0.184  Sum_probs=160.9

Q ss_pred             hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549           81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG  160 (441)
Q Consensus        81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G  160 (441)
                      -..||+.+|.|+-.                +.-|-.+|.++|.|++|.++-+.-=.|   ++   ..++++-++.....+
T Consensus       815 MlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HL---r~Tyy~yA~~Lear~  872 (1416)
T KOG3617|consen  815 MLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAETKDRI---HL---RNTYYNYAKYLEARR  872 (1416)
T ss_pred             hHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhhccce---eh---hhhHHHHHHHHHhhc
Confidence            34577777777763                334556888999999998776532111   01   135666666666667


Q ss_pred             CcchhHHHHHHHH----HHHHhcCCCcchhhhhhHhHHH-----HH---HHHHHHHcCCHHHHHHHHHhhhh--------
Q 013549          161 QDDTSSVVADKCL----QLCEKHKPENYKTYGAVNSRAN-----AV---KGLVELAHGNLESAESFFKGLQE--------  220 (441)
Q Consensus       161 ~~~~A~~l~~~~L----~i~~~~~~~~~~~~~~l~~~a~-----al---~gl~~~~qG~y~eAe~l~~~aL~--------  220 (441)
                      +...|+.+|+++-    ++..-...    +...+..+.+     .|   -|-+.-.+|+.|-|..+|..|-+        
T Consensus       873 Di~~AleyyEK~~~hafev~rmL~e----~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~  948 (1416)
T KOG3617|consen  873 DIEAALEYYEKAGVHAFEVFRMLKE----YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIK  948 (1416)
T ss_pred             cHHHHHHHHHhcCChHHHHHHHHHh----ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeE
Confidence            7777777777652    11111110    0011111111     01   13333479999999999998877        


Q ss_pred             ---cc--------CCchHH--HHHHHHHHHHccChHHHHHHHHHHHHH----HHhhcccCCCCCccccccchhH-HHHHH
Q 013549          221 ---EE--------GCTGSA--ALSYGEYLHATRNFLLAKKFYQKVIEV----LAEQKDFSDMNTLGSCNMALEE-VALAA  282 (441)
Q Consensus       221 ---~~--------~~~~~~--a~~~a~~~~~qG~y~eA~~ly~rAL~i----~~~~~~~~~~~~lg~~~~~~~~-~~~~a  282 (441)
                         +.        ...++.  .+-+|.-|.++|++.+|..+|-||-+.    +. -|.    +.+-      +. .+++.
T Consensus       949 C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl-cKE----nd~~------d~L~nlal 1017 (1416)
T KOG3617|consen  949 CIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL-CKE----NDMK------DRLANLAL 1017 (1416)
T ss_pred             eeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHh----cCHH------HHHHHHHh
Confidence               00        111222  244588899999999999999998643    11 111    0110      00 01111


Q ss_pred             ------HHHHHHHHHHcC-CHHHHHHHHHHH------------------HHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549          283 ------TFALGQLEAHMG-NFGDAEEILTRT------------------LTKTEELFGSHHPKVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       283 ------l~nLg~ly~~qG-~y~eAe~l~~rA------------------L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~  337 (441)
                            +..-|.-|...| .++.|..+|.||                  |++--+-|.+..  =...++.-|..+..-.+
T Consensus      1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s--Dp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS--DPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred             hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC--CHHHHHHHHHHHHhHHH
Confidence                  111222333444 455555555443                  444333333322  12356667789999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhcCCC---------------CCcc---hHhhhccHHHHHHHhccHHHHHHHhhchhhH
Q 013549          338 QEHSSALLIQEGLYRRALEFLKAPPL---------------ESEG---VETKVDRTDIVALARGGYAEALSVQQNRKDE  398 (441)
Q Consensus       338 ~eeA~~~~~Ae~ly~rAL~i~~~~~~---------------~~~~---~~~~l~nl~~~~~~~g~yaeal~~~~~r~~e  398 (441)
                      |++|..+.-+-.-|++||.|.+-.+.               +.|+   -...|..++.+++.||.|.-|...+.+..+.
T Consensus      1096 yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence            99999999999999999999753221               1121   1234557889999999999999988664433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.50  E-value=7.2e-07  Score=71.84  Aligned_cols=82  Identities=16%  Similarity=0.272  Sum_probs=63.4

Q ss_pred             HcCCHHHHHHHHHhhhhccCC--chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH
Q 013549          204 AHGNLESAESFFKGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA  281 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~--~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~  281 (441)
                      .+|+|++|+.+|++++...+.  .......+|.+|..+|+|++|.+++++ +.+-   ..                 ...
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---~~-----------------~~~   59 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---PS-----------------NPD   59 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---HC-----------------HHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---CC-----------------CHH
Confidence            379999999999999995442  334556679999999999999999999 4441   11                 123


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      ...-+|.++..+|+|++|++.|++|
T Consensus        60 ~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   60 IHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            4456799999999999999999986

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.48  E-value=1.9e-06  Score=88.44  Aligned_cols=103  Identities=11%  Similarity=0.065  Sum_probs=86.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHH
Q 013549          199 GLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV  278 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~  278 (441)
                      |...+.+|+|++|+.+|++++...+....+..++|.+|..+|+|++|+..+++||.+.   ..                 
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~-----------------   68 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD---PS-----------------   68 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC-----------------
Confidence            3444689999999999999999777777788889999999999999999999999981   11                 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH
Q 013549          279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT  326 (441)
Q Consensus       279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~  326 (441)
                      ...++.++|.+|..+|+|++|+..|++++.+     .+++|.+...+.
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~  111 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL-----APGDSRFTKLIK  111 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Confidence            1245789999999999999999999999975     477887665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.48  E-value=3.9e-06  Score=81.11  Aligned_cols=116  Identities=20%  Similarity=0.181  Sum_probs=96.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|......|+|.+|+..|+++....+....+...+|-+|-..|++++|..-|.+|++..   -.   ++           
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---~~---~p-----------  168 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA---PN---EP-----------  168 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc---cC---Cc-----------
Confidence            46666799999999999999999777677777888999999999999999999999983   11   11           


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                         ..++|||..|.-.|+++.|+.++.++-.     .++..+   .+..||+.+...||++++|
T Consensus       169 ---~~~nNlgms~~L~gd~~~A~~lll~a~l-----~~~ad~---~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         169 ---SIANNLGMSLLLRGDLEDAETLLLPAYL-----SPAADS---RVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             ---hhhhhHHHHHHHcCCHHHHHHHHHHHHh-----CCCCch---HHHHHHHHHHhhcCChHHH
Confidence               2479999999999999999999988743     333343   4568999999999999887

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.48  E-value=2.1e-06  Score=66.19  Aligned_cols=95  Identities=21%  Similarity=0.306  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ..++|.++..+|++++|+..+++++.+.   ..     .            ..+..++|.+|..+|++++|..+|++++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~-----~------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   62 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD---PD-----N------------ADAYYNLAAAYYKLGKYEEALEDYEKALE   62 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC---Cc-----c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567888889999999999999998871   11     0            13567999999999999999999999988


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +     .+.++   .++.++|.+|..+|++++|      ...+.+++++
T Consensus        63 ~-----~~~~~---~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~   97 (100)
T cd00189          63 L-----DPDNA---KAYYNLGLAYYKLGKYEEA------LEAYEKALEL   97 (100)
T ss_pred             C-----CCcch---hHHHHHHHHHHHHHhHHHH------HHHHHHHHcc
Confidence            5     34444   7788999999999998887      7778777654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.47  E-value=1.7e-06  Score=66.67  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=76.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .+..+..+|++++|...|++++...+....+...+|.++..+|++++|..+|++++.+.   ..     .          
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~-----~----------   67 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PD-----N----------   67 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---Cc-----c----------
Confidence            45666789999999999999999655555667788999999999999999999999872   11     0          


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                        ..+...+|.++..+|++++|..++.+++.+
T Consensus        68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          68 --AKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             --hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence              134689999999999999999999998864

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.43  E-value=0.0001  Score=80.17  Aligned_cols=279  Identities=16%  Similarity=0.036  Sum_probs=171.8

Q ss_pred             HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHhhhh
Q 013549           65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----YVEAIEKLQKVENFKNS  140 (441)
Q Consensus        65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~----y~eA~e~~~ral~i~~~  140 (441)
                      |.-+..++    ++.+.+.|++.+-.+++...   +|....-...++.-+|..|..+-.    ..+=..+.++++...++
T Consensus       397 Lmasklc~----e~l~~~eegldYA~kai~~~---~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~  469 (799)
T KOG4162|consen  397 LMASKLCI----ERLKLVEEGLDYAQKAISLL---GGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE  469 (799)
T ss_pred             HHHHHHHH----hchhhhhhHHHHHHHHHHHh---hhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence            44444554    36788999999999999966   333333556777777777765432    34444444444443333


Q ss_pred             hhhh---hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHh
Q 013549          141 ILGV---RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKG  217 (441)
Q Consensus       141 ~lg~---~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~  217 (441)
                      .+..   +..+.+.++.-|..+++.+.|.++..+++++-.....           -+.-+..++...+++|.+|+.+-.-
T Consensus       470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~-----------~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA-----------KAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH-----------HHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            3221   2346677888888999999999999998877544431           1223567777899999999999999


Q ss_pred             hhhccCCchHHHHHH-------------------------------------------HHHHHHccChHHHHHHHHHHHH
Q 013549          218 LQEEEGCTGSAALSY-------------------------------------------GEYLHATRNFLLAKKFYQKVIE  254 (441)
Q Consensus       218 aL~~~~~~~~~a~~~-------------------------------------------a~~~~~qG~y~eA~~ly~rAL~  254 (441)
                      ++++.+.....+..-                                           +.+...+++-.+|...+++++.
T Consensus       539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            998322210000000                                           1111122344456666666665


Q ss_pred             HHHhhcccCC------CCCccccccchhHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 013549          255 VLAEQKDFSD------MNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTC  327 (441)
Q Consensus       255 i~~~~~~~~~------~~~lg~~~~~~~~~~~~al~-nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~n  327 (441)
                      +.........      ..+.-+.++++ +.+...+. -.+.++...+.-++|.-++.+|-.|.        |..+..+.-
T Consensus       619 l~a~~~~~~~se~~Lp~s~~~~~~~~~-~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~  689 (799)
T KOG4162|consen  619 LVASQLKSAGSELKLPSSTVLPGPDSL-WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYL  689 (799)
T ss_pred             HHHhhhhhcccccccCcccccCCCCch-HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHH
Confidence            5432211000      00111112221 11222232 45778888899999999999998887        888899999


Q ss_pred             HHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhc
Q 013549          328 LALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG  383 (441)
Q Consensus       328 La~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g  383 (441)
                      .|.++..+|+.+||      ...|.-|+.+    .|+|+..   +.-+|.+++-.|
T Consensus       690 ~G~~~~~~~~~~EA------~~af~~Al~l----dP~hv~s---~~Ala~~lle~G  732 (799)
T KOG4162|consen  690 RGLLLEVKGQLEEA------KEAFLVALAL----DPDHVPS---MTALAELLLELG  732 (799)
T ss_pred             hhHHHHHHHhhHHH------HHHHHHHHhc----CCCCcHH---HHHHHHHHHHhC
Confidence            99999999999987      6777777665    5788763   334566666555

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.42  E-value=2.3e-06  Score=77.50  Aligned_cols=89  Identities=16%  Similarity=0.122  Sum_probs=77.2

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      ..+|+|++|+.+|+-.....+....-..++|.+++.+|+|++|+..|.+|+.+   ...     .       |     .+
T Consensus        46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~~d-----d-------p-----~~  105 (157)
T PRK15363         46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---KID-----A-------P-----QA  105 (157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCC-----C-------c-----hH
Confidence            47999999999999998866666677789999999999999999999999988   221     1       1     24


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e  311 (441)
                      ..|+|.+|...|+.+.|+..|+.|+.+..
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999883

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.42  E-value=2.3e-06  Score=97.22  Aligned_cols=197  Identities=18%  Similarity=0.156  Sum_probs=144.3

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      .+|.+.+|.. .-+++....+..|.-||+++.++..|+.++...|++++|+...+++.-+.++.+|.+.           
T Consensus       944 ~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds----------- 1011 (1236)
T KOG1839|consen  944 LEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS----------- 1011 (1236)
T ss_pred             cccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC-----------
Confidence            5777888888 7888888888888899999999999999999999999999999998877777665321           


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----ccCCchHH---H
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-----EEGCTGSA---A  229 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~~~~~~~~---a  229 (441)
                          ...+..                           ...+.+.+..+.+...|...+.+++.     ..+.|+.+   -
T Consensus      1012 ----~~t~~~---------------------------y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~ 1060 (1236)
T KOG1839|consen 1012 ----PNTKLA---------------------------YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSF 1060 (1236)
T ss_pred             ----HHHHHH---------------------------hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhh
Confidence                000000                           01122333344455555555555554     11223333   3


Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      .++..+++..++++.|..+.+.|+.+   .+.     .+|+....    +.-+.+-++.++..+|+|..|....+.+..|
T Consensus      1061 ~nle~l~~~v~e~d~al~~le~A~a~---~~~-----v~g~~~l~----~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1061 INLELLLLGVEEADTALRYLESALAK---NKK-----VLGPKELE----TALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHH---Hhh-----hcCccchh----hhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            56777889999999999999999997   333     44422111    2235578999999999999999999999999


Q ss_pred             HHHhhCCCCchHHHHHHHHH
Q 013549          310 TEELFGSHHPKVGVVLTCLA  329 (441)
Q Consensus       310 ~e~~lG~~HP~va~~l~nLa  329 (441)
                      +.+.+|++|+.+..+-..+-
T Consensus      1129 y~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1129 YKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred             HHHhhCCCcccchhhHHHHH
Confidence            99999999999998776554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.38  E-value=2.3e-06  Score=65.81  Aligned_cols=63  Identities=21%  Similarity=0.329  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh-chhhhhhhHHHHHHHHHHHHH
Q 013549          281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG-~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      .++.++|..+..+|+|++|+.+|++|+.+        +|+-...+.++|.+|..+| ++++|      ...+++|+++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A------~~~~~~al~l   67 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEA------IEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHH------HHHHHHHHHc
Confidence            35789999999999999999999999998        4777789999999999999 78887      8999999886

...

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=0.00014  Score=76.41  Aligned_cols=245  Identities=15%  Similarity=0.112  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549           61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus        61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      -|....+++....+.    -++..|++.|.+++.+.         ....-++|.+.+|...|+|.+.+.....+++....
T Consensus       223 ~a~~ek~lgnaaykk----k~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre  289 (539)
T KOG0548|consen  223 KAHKEKELGNAAYKK----KDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE  289 (539)
T ss_pred             hhhHHHHHHHHHHHh----hhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence            455566666665432    26899999999999754         34556889999999999999999988887665544


Q ss_pred             hhhhh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC--C-Cc-chhh-----------hhhHhHHHHHHHHHH
Q 013549          141 ILGVR---VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK--P-EN-YKTY-----------GAVNSRANAVKGLVE  202 (441)
Q Consensus       141 ~lg~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~--~-~~-~~~~-----------~~l~~~a~al~gl~~  202 (441)
                      ....-   ..++-.++..|..+++++.+..+++++|.-...-.  . .. .+..           .......+ ..|.-+
T Consensus       290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r-~kGne~  368 (539)
T KOG0548|consen  290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEER-EKGNEA  368 (539)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHH-HHHHHH
Confidence            32211   11222255567778899999999999874432200  0 00 0000           00000001 135666


Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      +..|+|..|...|.+++...+..+..-.|.|.+|-..|.|.+|..--+.+++.        +++            -+..
T Consensus       369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~------------~~kg  428 (539)
T KOG0548|consen  369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPN------------FIKA  428 (539)
T ss_pred             HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------Cch------------HHHH
Confidence            78999999999999999977767767778888999999999999999999887        111            1235


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR  353 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r  353 (441)
                      +.-=|.++..+.+|++|.+.|+++|+.-        |+-......+...+..|-..+.      .+..+++
T Consensus       429 y~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~~~~~rc~~a~~~~~~------~ee~~~r  485 (539)
T KOG0548|consen  429 YLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAIDGYRRCVEAQRGDET------PEETKRR  485 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHHhhcCCC------HHHHHHh
Confidence            5666999999999999999999999754        7777777766666665532222      3667777

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.36  E-value=2.4e-05  Score=89.19  Aligned_cols=323  Identities=14%  Similarity=0.103  Sum_probs=194.5

Q ss_pred             ccccCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHH
Q 013549           51 NRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEK  130 (441)
Q Consensus        51 ~~~~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~  130 (441)
                      +|..|-+||++..+....+.++.+-+    -..+|+.+--..+-..-...|.-||.++.++.|....-...|  +=+...
T Consensus       696 Erll~~~iPd~~Ks~~d~sv~p~dgq----~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~Rs  769 (1236)
T KOG1839|consen  696 ERLLGLDIPDTMKSYGDLSVFPYDGQ----HLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRS  769 (1236)
T ss_pred             HHHhccccchhHHhccccceeeeccc----HHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHH
Confidence            45579999999999999997775422    357888888888887777888999999988777766555555  334444


Q ss_pred             HHHHHHhhhhhhhhh---H---HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhc---CCCcch----------------
Q 013549          131 LQKVENFKNSILGVR---V---AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH---KPENYK----------------  185 (441)
Q Consensus       131 ~~ral~i~~~~lg~~---~---~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~---~~~~~~----------------  185 (441)
                      ...+++-..+.++..   +   ..++.+.++|..-.+..+...-.-+..++..+.   +.....                
T Consensus       770 lKhvlK~~~r~l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~  849 (1236)
T KOG1839|consen  770 LKHVLKDNLRLLGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLK  849 (1236)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHH
Confidence            444444333333332   1   245555555433333222211111111111000   000000                


Q ss_pred             -------hhhhhHhHHHHHHHHHHHHcCCHHHH---HHHHHhhhh---------c-------------------cCCchH
Q 013549          186 -------TYGAVNSRANAVKGLVELAHGNLESA---ESFFKGLQE---------E-------------------EGCTGS  227 (441)
Q Consensus       186 -------~~~~l~~~a~al~gl~~~~qG~y~eA---e~l~~~aL~---------~-------------------~~~~~~  227 (441)
                             ..-......... ..+....|.+.-+   +..+.+-+.         .                   +.+.+.
T Consensus       850 ~I~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~  928 (1236)
T KOG1839|consen  850 YITADSKNKFTAAHDVKSR-ETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPT  928 (1236)
T ss_pred             hccccccccccchhhhhHH-HHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCc
Confidence                   000000000000 1111112221111   111111111         0                   000111


Q ss_pred             HHH---H--HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013549          228 AAL---S--YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI  302 (441)
Q Consensus       228 ~a~---~--~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l  302 (441)
                      +..   .  -+...-.+|.+.+|-. .-+++..+...        .+  -+||+  ....+..|+.++...|++++|...
T Consensus       929 ~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--------~~--~~h~~--~~~~~~~La~l~~~~~d~~~Ai~~  995 (1236)
T KOG1839|consen  929 VSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV--------MG--VLHPE--VASKYRSLAKLSNRLGDNQEAIAQ  995 (1236)
T ss_pred             cchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh--------hh--hcchh--HHHHHHHHHHHHhhhcchHHHHHh
Confidence            111   1  1223345678888877 66677664322        23  23343  234688999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHHHHHHH
Q 013549          303 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVALA  381 (441)
Q Consensus       303 ~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~~~~~~  381 (441)
                      -.+|.-|.|+++|.+||.+...+.||+..+....+...|      ...+.|+++++. ..+++||.++.+-.|++.++..
T Consensus       996 ~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~a------l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~ 1069 (1236)
T KOG1839|consen  996 QRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGA------LKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG 1069 (1236)
T ss_pred             cccceeeechhccCCCHHHHHHhhHHHHHHHhccCccch------hhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh
Confidence            999999999999999999999999999988888866555      788999999986 4577999999888999999988


Q ss_pred             hccHHHHHHHhhchhhHH
Q 013549          382 RGGYAEALSVQQNRKDEG  399 (441)
Q Consensus       382 ~g~yaeal~~~~~r~~ea  399 (441)
                      .++++.|+...+...+..
T Consensus      1070 v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1070 VEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            889999988875544443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.35  E-value=3.2e-05  Score=87.11  Aligned_cols=157  Identities=9%  Similarity=-0.056  Sum_probs=115.2

Q ss_pred             CCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhc
Q 013549          100 GQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH  179 (441)
Q Consensus       100 ~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~  179 (441)
                      .+.-.|+-...+..|...|.++|++++|+.+++.+++..+..+    ..+.-++.++.+.+++..+..+  .++++..  
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i----~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--   94 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI----SALYISGILSLSRRPLNDSNLL--NLIDSFS--   94 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce----ehHHHHHHHHHhhcchhhhhhh--hhhhhcc--
Confidence            4566888999999999999999999999999998877766543    2455566688888887665543  3332222  


Q ss_pred             CCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549          180 KPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ  259 (441)
Q Consensus       180 ~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~  259 (441)
                                              ...++ ++..+|.+.+-.......+..++|.+|..+|++++|...|+++|++   .
T Consensus        95 ------------------------~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D  146 (906)
T PRK14720         95 ------------------------QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---D  146 (906)
T ss_pred             ------------------------cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---C
Confidence                                    22334 2333333333323334457789999999999999999999999998   1


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                                     |+  ...++||+|-.|..+ ++++|++++.+|+..+
T Consensus       147 ---------------~~--n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        147 ---------------RD--NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             ---------------cc--cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence                           11  135799999999999 9999999999998654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.34  E-value=1.5e-05  Score=69.24  Aligned_cols=114  Identities=22%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                      +.+++|.++..+|+.++|+++|++|++     .|..-+.-...+.++|..|+..|++++|      +.++++++.-  .+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA------~~~L~~~~~~--~p   69 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEA------LALLEEALEE--FP   69 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHH--CC
Confidence            357899999999999999999999988     4777777788999999999999999997      7888887542  22


Q ss_pred             CCCCcchHhhhccHHHHHHHhccHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013549          362 PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAW  410 (441)
Q Consensus       362 ~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~~eae~~~~~a~~~~  410 (441)
                      ..+-.+...  -.++.+....|++.||+.+...-..+--..++.|...|
T Consensus        70 ~~~~~~~l~--~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y  116 (120)
T PF12688_consen   70 DDELNAALR--VFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFY  116 (120)
T ss_pred             CccccHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211112222  23677888899999999876444433333344444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.33  E-value=4.2e-06  Score=85.85  Aligned_cols=94  Identities=12%  Similarity=0.168  Sum_probs=79.0

Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      .-|.-+...|+|++|+.+|++||++   .-.                 ....+.++|.+|..+|+|++|+..+.+|+.+.
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~---~P~-----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDL---DPN-----------------NAELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3466677899999999999999987   111                 12457899999999999999999999999973


Q ss_pred             HHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          311 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       311 e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                              |.-...+.++|.+|..+|+|++|      +..|++++++.
T Consensus        67 --------P~~~~a~~~lg~~~~~lg~~~eA------~~~~~~al~l~  100 (356)
T PLN03088         67 --------PSLAKAYLRKGTACMKLEEYQTA------KAALEKGASLA  100 (356)
T ss_pred             --------cCCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHhC
Confidence                    55566789999999999999987      89999998873

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.32  E-value=4.2e-05  Score=84.26  Aligned_cols=228  Identities=15%  Similarity=0.143  Sum_probs=139.4

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-------------
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-------------  144 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-------------  144 (441)
                      .+|.+++|.-+|.+|+...        |..=.....-+.+|...|++..|.+-|++.+...+..-..             
T Consensus       219 ~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~  290 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF  290 (895)
T ss_pred             hcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence            4688999999999999744        3335668888889999999999999998887665511000             


Q ss_pred             -----hHHH-------------------HHHHHHHHHhcCCcchhHHHHHHHHHH-HHhcCCCcch--------------
Q 013549          145 -----RVAA-------------------MEALAGLYLQLGQDDTSSVVADKCLQL-CEKHKPENYK--------------  185 (441)
Q Consensus       145 -----~~~a-------------------l~~La~l~~~~G~~~~A~~l~~~~L~i-~~~~~~~~~~--------------  185 (441)
                           +..+                   ++-++.+++...+++.+.+....--.. .++..++ +.              
T Consensus       291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e-~~~~~~~~~~~~~~~~  369 (895)
T KOG2076|consen  291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE-WDTDERRREEPNALCE  369 (895)
T ss_pred             HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh-hhhhhhcccccccccc
Confidence                 0011                   122344444444444443322211110 0000000 00              


Q ss_pred             --hhhhhHhHH-HHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          186 --TYGAVNSRA-NAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       186 --~~~~l~~~a-~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                        +..+...+. ....+++.+.-++..+++..|..--. ....+......++.+|...|+|.+|.++|-.....-     
T Consensus       370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-----  444 (895)
T KOG2076|consen  370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-----  444 (895)
T ss_pred             CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-----
Confidence              000111111 23346666677777776655543222 122344556788999999999999999998865431     


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                           ...         .......+|..|..+|.|++|.+.|+++|..     -|+|-++.++   |+.+|..+|+.|+|
T Consensus       445 -----~~~---------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p~~~D~Ri~---Lasl~~~~g~~Eka  502 (895)
T KOG2076|consen  445 -----GYQ---------NAFVWYKLARCYMELGEYEEAIEFYEKVLIL-----APDNLDARIT---LASLYQQLGNHEKA  502 (895)
T ss_pred             -----ccc---------chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCchhhhhh---HHHHHHhcCCHHHH
Confidence                 111         1234579999999999999999999999964     4666666555   45999999997654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.31  E-value=9e-07  Score=61.07  Aligned_cols=41  Identities=22%  Similarity=0.203  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc-CCCCCcc
Q 013549          321 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPLESEG  367 (441)
Q Consensus       321 va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~-~~~~~~~  367 (441)
                      |+.+++|||.+|..+|++++|      +.+++++++|++. .|++||+
T Consensus         1 ta~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEA------LELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHH------HHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchh------hHHHHHHHHHHHHHhcccccC
Confidence            688999999999999999987      9999999999965 5899996

>PLN02789 farnesyltranstransferase

Probab=98.29  E-value=0.00015  Score=73.36  Aligned_cols=187  Identities=10%  Similarity=0.039  Sum_probs=131.6

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      ++|.+|+.+++.++.                         ..+++.+|+..+.+++.+.+...    .+++..+.++..+
T Consensus        34 ~~~~~a~~~~ra~l~-------------------------~~e~serAL~lt~~aI~lnP~~y----taW~~R~~iL~~L   84 (320)
T PLN02789         34 PEFREAMDYFRAVYA-------------------------SDERSPRALDLTADVIRLNPGNY----TVWHFRRLCLEAL   84 (320)
T ss_pred             HHHHHHHHHHHHHHH-------------------------cCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHc
Confidence            578888888887775                         45789999999999998887653    3667777777777


Q ss_pred             C-CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC--HHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549          160 G-QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN--LESAESFFKGLQEEEGCTGSAALSYGEYL  236 (441)
Q Consensus       160 G-~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~--y~eAe~l~~~aL~~~~~~~~~a~~~a~~~  236 (441)
                      | ++.++..++++++..--+.       ......     .+.+....|+  ++++..++.+++...+....+-...+.++
T Consensus        85 ~~~l~eeL~~~~~~i~~npkn-------yqaW~~-----R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l  152 (320)
T PLN02789         85 DADLEEELDFAEDVAEDNPKN-------YQIWHH-----RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVL  152 (320)
T ss_pred             chhHHHHHHHHHHHHHHCCcc-------hHHhHH-----HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            7 4577777777775332111       122222     2444445666  37889999999996666666777778899


Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHH
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM---GNF----GDAEEILTRTLTK  309 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q---G~y----~eAe~l~~rAL~i  309 (441)
                      ...|+|++|++++.++|++   .-.          |       ..+.+..+.+....   |++    +++.++..+++.+
T Consensus       153 ~~l~~~~eeL~~~~~~I~~---d~~----------N-------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~  212 (320)
T PLN02789        153 RTLGGWEDELEYCHQLLEE---DVR----------N-------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA  212 (320)
T ss_pred             HHhhhHHHHHHHHHHHHHH---CCC----------c-------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence            9999999999999999998   111          1       13567777777766   444    3566666677665


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549          310 TEELFGSHHPKVGVVLTCLALMFRNK  335 (441)
Q Consensus       310 ~e~~lG~~HP~va~~l~nLa~ly~~q  335 (441)
                              .|.-.++.+.++.+|...
T Consensus       213 --------~P~N~SaW~Yl~~ll~~~  230 (320)
T PLN02789        213 --------NPRNESPWRYLRGLFKDD  230 (320)
T ss_pred             --------CCCCcCHHHHHHHHHhcC
Confidence                    466677888888999873

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.27  E-value=5.2e-06  Score=63.81  Aligned_cols=63  Identities=21%  Similarity=0.359  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEEILTR  305 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG-~y~eAe~l~~r  305 (441)
                      .+...+|.++..+|+|++|+..|.+|+++   .               |+  ...++.++|.+|..+| +|++|++.+++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~---------------p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL---D---------------PN--NAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHH---S---------------TT--HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C---------------CC--CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            34567788899999999999999999988   1               11  2346789999999999 79999999999


Q ss_pred             HHHH
Q 013549          306 TLTK  309 (441)
Q Consensus       306 AL~i  309 (441)
                      |+++
T Consensus        64 al~l   67 (69)
T PF13414_consen   64 ALKL   67 (69)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9876

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.26  E-value=0.00061  Score=59.64  Aligned_cols=226  Identities=23%  Similarity=0.263  Sum_probs=157.6

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      +.+..+...+...+......      ........++..+...|++.++...+...+..  .........+..++..+...
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  108 (291)
T COG0457          37 GELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEAL  108 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHH
Confidence            45777888888888655322      35778899999999999999999999988653  00111123455566666677


Q ss_pred             CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHH-HHHHcCCHHHHHHHHHhhhhccC---CchHHHHHHHHH
Q 013549          160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGL-VELAHGNLESAESFFKGLQEEEG---CTGSAALSYGEY  235 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl-~~~~qG~y~eAe~l~~~aL~~~~---~~~~~a~~~a~~  235 (441)
                      +++..+...+..++......            .......+. ++...|++++|...|++++...+   .........+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (291)
T COG0457         109 GKYEEALELLEKALALDPDP------------DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL  176 (291)
T ss_pred             hhHHHHHHHHHHHHcCCCCc------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence            77666666665554221111            011122344 67799999999999999977322   233344555666


Q ss_pred             HHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549          236 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG  315 (441)
Q Consensus       236 ~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG  315 (441)
                      +...|++++|...+.+++.+.   ..     .           ......+++..+..+|++++|...+.+++.....   
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~---~~-----~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---  234 (291)
T COG0457         177 LEALGRYEEALELLEKALKLN---PD-----D-----------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---  234 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhC---cc-----c-----------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---
Confidence            788999999999999999983   11     0           0134689999999999999999999999998876   


Q ss_pred             CCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          316 SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       316 ~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                           ....+..++..+...|.++++      ...+.+++...
T Consensus       235 -----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  266 (291)
T COG0457         235 -----NAEALYNLALLLLELGRYEEA------LEALEKALELD  266 (291)
T ss_pred             -----cHHHHhhHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence                 556677777877766666665      66777776654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.25  E-value=3.9e-06  Score=63.93  Aligned_cols=58  Identities=16%  Similarity=0.213  Sum_probs=52.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      .|..+..+|+|++|+..|++++...+....+...+|.++..+|++++|+.+|++++++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3667789999999999999999988888889999999999999999999999999987

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.24  E-value=0.00022  Score=76.53  Aligned_cols=209  Identities=20%  Similarity=0.307  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549          110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA  189 (441)
Q Consensus       110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~  189 (441)
                      ++.-...++.+.|+|++|+++++.....    +-+++..++..+.++..+|++++|+..+...++.    .|+.+.....
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----NPdn~~Yy~~   77 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR----NPDNYDYYRG   77 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHH
Confidence            4555667888999999999998764222    2233456778889999999999998888777532    1211110001


Q ss_pred             hHhHHHHHHHHHH-HHcCCHHHHHHHHHhhhh--------------------------------ccCCchHHHHHHHHHH
Q 013549          190 VNSRANAVKGLVE-LAHGNLESAESFFKGLQE--------------------------------EEGCTGSAALSYGEYL  236 (441)
Q Consensus       190 l~~~a~al~gl~~-~~qG~y~eAe~l~~~aL~--------------------------------~~~~~~~~a~~~a~~~  236 (441)
                      +   ..++ |+-. ..-...+.-..+|++.-.                                .....|.+..++-.+|
T Consensus        78 L---~~~~-g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly  153 (517)
T PF12569_consen   78 L---EEAL-GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLY  153 (517)
T ss_pred             H---HHHH-hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            0   0000 0000 000111222222222211                                0112334445555555


Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      ....+..--+.+.+.-+.-.+....+...+  . ....+....+.+++-||+.|...|+|++|.++..+|++.       
T Consensus       154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~--~-~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-------  223 (517)
T PF12569_consen  154 KDPEKAAIIESLVEEYVNSLESNGSFSNGD--D-EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-------  223 (517)
T ss_pred             cChhHHHHHHHHHHHHHHhhcccCCCCCcc--c-cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------
Confidence            544443333333333222211111100000  0 001122234678899999999999999999999999975       


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhh
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                       -|.....+..-|.+|..+|++++|
T Consensus       224 -tPt~~ely~~KarilKh~G~~~~A  247 (517)
T PF12569_consen  224 -TPTLVELYMTKARILKHAGDLKEA  247 (517)
T ss_pred             -CCCcHHHHHHHHHHHHHCCCHHHH
Confidence             388889999999999999999998

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.24  E-value=3.2e-05  Score=70.04  Aligned_cols=95  Identities=11%  Similarity=-0.008  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      ++..+..+|..+..+|+|++|+.+|+-...+        .|.......|||.+++.+|+|++|      ...|.+|+.+-
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~A------I~aY~~A~~L~   99 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEA------IYAYGRAAQIK   99 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC
Confidence            4667899999999999999999999877665        488889999999999999999987      89999997663


Q ss_pred             hcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          359 KAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       359 ~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                          +++|.   ..-|++++++..|+.+.|...+..
T Consensus       100 ----~ddp~---~~~~ag~c~L~lG~~~~A~~aF~~  128 (157)
T PRK15363        100 ----IDAPQ---APWAAAECYLACDNVCYAIKALKA  128 (157)
T ss_pred             ----CCCch---HHHHHHHHHHHcCCHHHHHHHHHH
Confidence                46664   456899999999999999887633

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=4.9e-05  Score=77.71  Aligned_cols=236  Identities=17%  Similarity=0.112  Sum_probs=153.0

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhhhhhhhhh-HHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYV--------EAIEKLQKVENFKNSILGVR-VAAM  149 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~--------eA~e~~~ral~i~~~~lg~~-~~al  149 (441)
                      -|+|++|+--+++.+.+..... ..|-...++...++.+-..+-.+.        .|.+.+++.   .+++.... -..+
T Consensus        96 ~~~~~~a~~dar~~~r~kd~~~-k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~---~~s~s~~pac~~a  171 (486)
T KOG0550|consen   96 LGRFEEALGDARQSVRLKDGFS-KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKL---APSHSREPACFKA  171 (486)
T ss_pred             HHhHhhcccchhhheecCCCcc-ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcc---cccccCCchhhHH
Confidence            4788999999999888775443 345555555555554433322221        111111111   11100000 0011


Q ss_pred             HHH-HHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHH
Q 013549          150 EAL-AGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSA  228 (441)
Q Consensus       150 ~~L-a~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~  228 (441)
                      .-| +.++..+|++++|....-..+.+   +.         .+..+..+.|+++...++.+.|..+|+++|...+.+..+
T Consensus       172 ~~lka~cl~~~~~~~~a~~ea~~ilkl---d~---------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s  239 (486)
T KOG0550|consen  172 KLLKAECLAFLGDYDEAQSEAIDILKL---DA---------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS  239 (486)
T ss_pred             HHhhhhhhhhcccchhHHHHHHHHHhc---cc---------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH
Confidence            111 45677789998887554433322   11         112223356888889999999999999999954444222


Q ss_pred             H------------HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCH
Q 013549          229 A------------LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF  296 (441)
Q Consensus       229 a------------~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y  296 (441)
                      -            -.-|+-..++|+|.+|.++|-.||.|        +++...        ..+-.+.|.|.+....|+.
T Consensus       240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i--------dP~n~~--------~naklY~nra~v~~rLgrl  303 (486)
T KOG0550|consen  240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI--------DPSNKK--------TNAKLYGNRALVNIRLGRL  303 (486)
T ss_pred             HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC--------Cccccc--------hhHHHHHHhHhhhcccCCc
Confidence            1            11266677899999999999999999        222211        1223568999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      .||+.-...|+.|-        |.....|.--|..|...++|++|      ...|++|+..-+.
T Consensus       304 ~eaisdc~~Al~iD--------~syikall~ra~c~l~le~~e~A------V~d~~~a~q~~~s  353 (486)
T KOG0550|consen  304 REAISDCNEALKID--------SSYIKALLRRANCHLALEKWEEA------VEDYEKAMQLEKD  353 (486)
T ss_pred             hhhhhhhhhhhhcC--------HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhccc
Confidence            99999999999984        56778888899999999999998      7888888776543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=6.7e-06  Score=80.96  Aligned_cols=91  Identities=20%  Similarity=0.271  Sum_probs=76.9

Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      |+=+..-++|.+|+..|.+||++   .-.                 ....++|-|.+|..+|.|+.|.+=.+.||.|   
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l---~P~-----------------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---  144 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIEL---DPT-----------------NAVYYCNRAAAYSKLGEYEDAVKDCESALSI---  144 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhc---CCC-----------------cchHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence            33445668899999999999988   111                 1234789999999999999999999999987   


Q ss_pred             hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                           .|....++..||.+|..+|++++|      +.-|++||+|
T Consensus       145 -----Dp~yskay~RLG~A~~~~gk~~~A------~~aykKaLel  178 (304)
T KOG0553|consen  145 -----DPHYSKAYGRLGLAYLALGKYEEA------IEAYKKALEL  178 (304)
T ss_pred             -----ChHHHHHHHHHHHHHHccCcHHHH------HHHHHhhhcc
Confidence                 588899999999999999999987      7779999988

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=0.001  Score=70.80  Aligned_cols=258  Identities=14%  Similarity=0.069  Sum_probs=160.3

Q ss_pred             hhhHHHHHHHHHHhhhcccc-----------------------CCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPS-----------------------DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE  135 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~-----------------------~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral  135 (441)
                      .|+|++|+.+|+.-......                       .......++=..+.|.|.++...|+|.+|+++++.|+
T Consensus       123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~  202 (652)
T KOG2376|consen  123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL  202 (652)
T ss_pred             HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            68999999999987443222                       1122223466789999999999999999999999999


Q ss_pred             Hhhhhhhhhh----------H-HHHHHHHHHHHhcCCcchhHHHHHHHHHHH----------HhcC-----CCcchhhhh
Q 013549          136 NFKNSILGVR----------V-AAMEALAGLYLQLGQDDTSSVVADKCLQLC----------EKHK-----PENYKTYGA  189 (441)
Q Consensus       136 ~i~~~~lg~~----------~-~al~~La~l~~~~G~~~~A~~l~~~~L~i~----------~~~~-----~~~~~~~~~  189 (441)
                      +++.+.+-..          + ...--|+.++..+|+-.+|...|..++..-          .+..     .-.+.+-..
T Consensus       203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~  282 (652)
T KOG2376|consen  203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDL  282 (652)
T ss_pred             HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHH
Confidence            9988765321          1 122347888999999999998777765321          1100     000111000


Q ss_pred             hHhHH------------------H-H---HHHHHHHHcCC----------------------------------HHHHHH
Q 013549          190 VNSRA------------------N-A---VKGLVELAHGN----------------------------------LESAES  213 (441)
Q Consensus       190 l~~~a------------------~-a---l~gl~~~~qG~----------------------------------y~eAe~  213 (441)
                      +..+-                  + +   ..++..+..++                                  +..|+.
T Consensus       283 l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e  362 (652)
T KOG2376|consen  283 LKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIE  362 (652)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHH
Confidence            00000                  0 0   01111111222                                  222222


Q ss_pred             HHHhhhhccCCc-hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549          214 FFKGLQEEEGCT-GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH  292 (441)
Q Consensus       214 l~~~aL~~~~~~-~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~  292 (441)
                      ++...-+.+++. ..+++..+.+...+|+++.|...++.-++.+....        ..-...|.     +.+.+=.+|..
T Consensus       363 ~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~--------~~~~~~P~-----~V~aiv~l~~~  429 (652)
T KOG2376|consen  363 LLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI--------LEAKHLPG-----TVGAIVALYYK  429 (652)
T ss_pred             HHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh--------hhhccChh-----HHHHHHHHHHh
Confidence            222222234444 33556678888999999999999997775432211        11111122     33455667888


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          293 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                      -++-+-|-..+.+|+..+....-.. +.....+--+|.+-.+-|+-++|      -.+|+.-++
T Consensus       430 ~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea------~s~leel~k  486 (652)
T KOG2376|consen  430 IKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEA------SSLLEELVK  486 (652)
T ss_pred             ccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHH------HHHHHHHHH
Confidence            8888999999999999999886555 77778888888888888988877      556655443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.16  E-value=1.6e-05  Score=79.47  Aligned_cols=239  Identities=16%  Similarity=0.133  Sum_probs=132.5

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|.|..++.-++  +..      .+.+.-.....-+...|..+|+|+..+.-....      . .+...++..++..+.
T Consensus        13 y~G~Y~~~i~e~~--~~~------~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~------~-~~~l~av~~la~y~~   77 (290)
T PF04733_consen   13 YLGNYQQCINEAS--LKS------FSPENKLERDFYQYRSYIALGQYDSVLSEIKKS------S-SPELQAVRLLAEYLS   77 (290)
T ss_dssp             CTT-HHHHCHHHH--CHT------STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT------S-SCCCHHHHHHHHHHC
T ss_pred             HhhhHHHHHHHhh--ccC------CCchhHHHHHHHHHHHHHHcCChhHHHHHhccC------C-ChhHHHHHHHHHHHh
Confidence            4688998886655  211      123345666777888899999998876544321      1 111223444444332


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                      ...+.       ++.+.-+........   .........+.+.++...|++++|..++.+.    . ......-.-.+|.
T Consensus        78 ~~~~~-------e~~l~~l~~~~~~~~---~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~-~lE~~al~Vqi~L  142 (290)
T PF04733_consen   78 SPSDK-------ESALEELKELLADQA---GESNEIVQLLAATILFHEGDYEEALKLLHKG----G-SLELLALAVQILL  142 (290)
T ss_dssp             TSTTH-------HCHHHHHHHCCCTS------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----T-CHHHHHHHHHHHH
T ss_pred             Cccch-------HHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----C-cccHHHHHHHHHH
Confidence            11111       222222222221111   1111223345677777899999998887765    1 1122222345778


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH--HHHHcC--CHHHHHHHHHHHHHHHHHh
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ--LEAHMG--NFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~--ly~~qG--~y~eAe~l~~rAL~i~e~~  313 (441)
                      .++|++.|...+++.-++   .     .          |    .++.+|+.  +....|  +|.+|-       -+|++ 
T Consensus       143 ~~~R~dlA~k~l~~~~~~---~-----e----------D----~~l~qLa~awv~l~~g~e~~~~A~-------y~f~E-  192 (290)
T PF04733_consen  143 KMNRPDLAEKELKNMQQI---D-----E----------D----SILTQLAEAWVNLATGGEKYQDAF-------YIFEE-  192 (290)
T ss_dssp             HTT-HHHHHHHHHHHHCC---S-----C----------C----HHHHHHHHHHHHHHHTTTCCCHHH-------HHHHH-
T ss_pred             HcCCHHHHHHHHHHHHhc---C-----C----------c----HHHHHHHHHHHHHHhCchhHHHHH-------HHHHH-
Confidence            999999999888775433   1     1          1    12345554  444456  455554       45555 


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHH
Q 013549          314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL  389 (441)
Q Consensus       314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal  389 (441)
                      +....|.+..+++.+|.++..+|+|++|      +.++++|++.    .+.+|+   ++-|+.++....|+-.++.
T Consensus       193 l~~~~~~t~~~lng~A~~~l~~~~~~eA------e~~L~~al~~----~~~~~d---~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  193 LSDKFGSTPKLLNGLAVCHLQLGHYEEA------EELLEEALEK----DPNDPD---TLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             HHCCS--SHHHHHHHHHHHHHCT-HHHH------HHHHHHHCCC-----CCHHH---HHHHHHHHHHHTT-TCHHH
T ss_pred             HHhccCCCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHh----ccCCHH---HHHHHHHHHHHhCCChhHH
Confidence            2345566778899999999999999997      8888887532    234444   6678888888888774433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.12  E-value=1.1e-05  Score=83.79  Aligned_cols=73  Identities=11%  Similarity=-0.037  Sum_probs=63.4

Q ss_pred             CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549           56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE  135 (441)
Q Consensus        56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral  135 (441)
                      +.-|+.+...+|++..|.    ..|+|++|+.+|+++|++.     |+++....+++|+|.+|..+|++++|++.+++++
T Consensus        69 ~~dP~~a~a~~NLG~AL~----~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLF----SKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             cCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445677788999999983    4789999999999999865     6676666889999999999999999999999998


Q ss_pred             Hh
Q 013549          136 NF  137 (441)
Q Consensus       136 ~i  137 (441)
                      ++
T Consensus       140 el  141 (453)
T PLN03098        140 RD  141 (453)
T ss_pred             Hh
Confidence            76

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.0031  Score=61.22  Aligned_cols=157  Identities=22%  Similarity=0.274  Sum_probs=115.9

Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA  238 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~  238 (441)
                      .|+.+.    +++|++.+....|..        .|..-+.++.+-..|+|++|+++|++.|.+++.+..+--.=-.+...
T Consensus        65 ~~~~~l----Aq~C~~~L~~~fp~S--------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka  132 (289)
T KOG3060|consen   65 TGRDDL----AQKCINQLRDRFPGS--------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA  132 (289)
T ss_pred             hcchHH----HHHHHHHHHHhCCCC--------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence            355544    456666655555432        24444677777899999999999999999765442222222236778


Q ss_pred             ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549          239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH  318 (441)
Q Consensus       239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H  318 (441)
                      ||+--+|+.....=|+.|-           +      |   ..+-.-|+.+|...|+|++|.-+|++.+-|.        
T Consensus       133 ~GK~l~aIk~ln~YL~~F~-----------~------D---~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~--------  184 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLDKFM-----------N------D---QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ--------  184 (289)
T ss_pred             cCCcHHHHHHHHHHHHHhc-----------C------c---HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------
Confidence            9999999998888888851           1      0   1356789999999999999999999998763        


Q ss_pred             chHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          319 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       319 P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      |..-.....||.++..+|-.   .++..|..+|.|||++-
T Consensus       185 P~n~l~f~rlae~~Yt~gg~---eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  185 PFNPLYFQRLAEVLYTQGGA---ENLELARKYYERALKLN  221 (289)
T ss_pred             CCcHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhC
Confidence            66667788889999999974   44667899999999985

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.11  E-value=0.00081  Score=68.61  Aligned_cols=248  Identities=16%  Similarity=0.119  Sum_probs=134.4

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      -.|++++|=.++.++-+.-       ..++..++..++.++-.+|+|..|.+...+.+...+...-    .+.=...+|.
T Consensus       130 qrgd~~~an~yL~eaae~~-------~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~----vlrLa~r~y~  198 (400)
T COG3071         130 QRGDEDRANRYLAEAAELA-------GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPE----VLRLALRAYI  198 (400)
T ss_pred             hcccHHHHHHHHHHHhccC-------CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH----HHHHHHHHHH
Confidence            3567777777777776532       1135566777777888888888888877777666655421    1222334566


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH---HHHhhhhccCCchHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES---FFKGLQEEEGCTGSAALSYGE  234 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~---l~~~aL~~~~~~~~~a~~~a~  234 (441)
                      ..|++.+...+..+.    .+..-.+.++...+...  +..|+.. ..++-+.++.   +.++.......++....+|+.
T Consensus       199 ~~g~~~~ll~~l~~L----~ka~~l~~~e~~~le~~--a~~glL~-q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~  271 (400)
T COG3071         199 RLGAWQALLAILPKL----RKAGLLSDEEAARLEQQ--AWEGLLQ-QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAE  271 (400)
T ss_pred             HhccHHHHHHHHHHH----HHccCCChHHHHHHHHH--HHHHHHH-HHhccccchHHHHHHHhccHHhhcChhHHHHHHH
Confidence            677765544333322    22221111122222111  2222221 1111111221   222222222333455555665


Q ss_pred             HHHHccChHHHHHHHHHHHHHHHh--------hcccCCCCCcc-----ccccchhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013549          235 YLHATRNFLLAKKFYQKVIEVLAE--------QKDFSDMNTLG-----SCNMALEEVALAATFALGQLEAHMGNFGDAEE  301 (441)
Q Consensus       235 ~~~~qG~y~eA~~ly~rAL~i~~~--------~~~~~~~~~lg-----~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~  301 (441)
                      -+...|++++|..+-+.+|.-..+        ...+.++..+-     ....||+.+  ..+..||.+|...+.|.+|.+
T Consensus       272 ~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~  349 (400)
T COG3071         272 RLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASE  349 (400)
T ss_pred             HHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHH
Confidence            556666666666666666542100        00000000000     000011111  124689999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          302 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       302 l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      +|+.||...-         -+..++-||.+|..+|+.++|      +..++.+|-....
T Consensus       350 ~leaAl~~~~---------s~~~~~~la~~~~~~g~~~~A------~~~r~e~L~~~~~  393 (400)
T COG3071         350 ALEAALKLRP---------SASDYAELADALDQLGEPEEA------EQVRREALLLTRQ  393 (400)
T ss_pred             HHHHHHhcCC---------ChhhHHHHHHHHHHcCChHHH------HHHHHHHHHHhcC
Confidence            9999887542         357788999999999999887      9999999955543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=1.3e-05  Score=78.97  Aligned_cols=87  Identities=14%  Similarity=0.091  Sum_probs=74.2

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      ...++|.+|...|.+||...+..+.-..+-|.+|...|.|+.|.+-.+.||.|        +++            ..-+
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~------------yska  151 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------DPH------------YSKA  151 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------ChH------------HHHH
Confidence            47899999999999999965555444567788999999999999999999999        112            3457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      +.-||.+|..+|+|.+|++.|++||+|
T Consensus       152 y~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  152 YGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence            899999999999999999999999876

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=5.2e-05  Score=75.75  Aligned_cols=169  Identities=20%  Similarity=0.231  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549          110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA  189 (441)
Q Consensus       110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~  189 (441)
                      +..-.|.+|...|++++|+.++.+.-     .+    ...--..-+|..+++.+.|...+++.-    +..     +...
T Consensus       104 ~~~~~A~i~~~~~~~~~AL~~l~~~~-----~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~----~~~-----eD~~  165 (290)
T PF04733_consen  104 VQLLAATILFHEGDYEEALKLLHKGG-----SL----ELLALAVQILLKMNRPDLAEKELKNMQ----QID-----EDSI  165 (290)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCCCTTTT-----CH----HHHHHHHHHHHHTT-HHHHHHHHHHHH----CCS-----CCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHccC-----cc----cHHHHHHHHHHHcCCHHHHHHHHHHHH----hcC-----CcHH
Confidence            44556677888999999998887631     01    111123456888999998887665542    211     1122


Q ss_pred             hHhHHHHHHHHHHHHcC--CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549          190 VNSRANAVKGLVELAHG--NLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT  267 (441)
Q Consensus       190 l~~~a~al~gl~~~~qG--~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~  267 (441)
                      +...+.   +.+.+..|  +|.+|-.+|++.-...+.++.+.+..|.++..+|+|+||+.++++|++.     .   +  
T Consensus       166 l~qLa~---awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~---~--  232 (290)
T PF04733_consen  166 LTQLAE---AWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----D---P--  232 (290)
T ss_dssp             HHHHHH---HHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------C--
T ss_pred             HHHHHH---HHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----c---c--
Confidence            323322   33444555  6999999999966665556677778898999999999999999998753     1   0  


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549          268 LGSCNMALEEVALAATFALGQLEAHMGNF-GDAEEILTRTLTKTEELFGSHHPKVGVV  324 (441)
Q Consensus       268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y-~eAe~l~~rAL~i~e~~lG~~HP~va~~  324 (441)
                              .  ...++.|+..+...+|+- +.+++++.+..     ..-|+||-+...
T Consensus       233 --------~--~~d~LaNliv~~~~~gk~~~~~~~~l~qL~-----~~~p~h~~~~~~  275 (290)
T PF04733_consen  233 --------N--DPDTLANLIVCSLHLGKPTEAAERYLSQLK-----QSNPNHPLVKDL  275 (290)
T ss_dssp             --------C--HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH-----HHTTTSHHHHHH
T ss_pred             --------C--CHHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HhCCCChHHHHH
Confidence                    0  124678999999999999 56666766632     357889987643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.09  E-value=8.4e-06  Score=62.04  Aligned_cols=60  Identities=20%  Similarity=0.297  Sum_probs=53.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          285 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      .+|..+..+|+|++|++.|++++.        .+|.-...+..+|.+|..+|++++|      ...|++++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A------~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEA------LAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence            589999999999999999999985        5599999999999999999999987      89999998763

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.08  E-value=4.3e-05  Score=75.25  Aligned_cols=103  Identities=17%  Similarity=0.226  Sum_probs=81.4

Q ss_pred             HHHHHHHHH-HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          228 AALSYGEYL-HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       228 ~a~~~a~~~-~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      ..+..|..+ ..+|+|++|...|++.+..+   -.    +.+          .-.++..||.+|..+|+|++|...|+++
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~----s~~----------a~~A~y~LG~~y~~~g~~~~A~~~f~~v  206 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PD----STY----------QPNANYWLGQLNYNKGKKDDAAYYFASV  206 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cC----Ccc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334444433 56799999999999999873   11    111          1246789999999999999999999998


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +..+     |+||.+...+..+|.+|..+|++++|      ...|++.++.+
T Consensus       207 v~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A------~~~~~~vi~~y  247 (263)
T PRK10803        207 VKNY-----PKSPKAADAMFKVGVIMQDKGDTAKA------KAVYQQVIKKY  247 (263)
T ss_pred             HHHC-----CCCcchhHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence            8876     79999999999999999999999887      78888876554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=6.2e-05  Score=76.94  Aligned_cols=138  Identities=19%  Similarity=0.218  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh-----------hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-----------LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ  174 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~-----------lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~  174 (441)
                      ..|...---|+.|+..|+|..|...|++++...+..           ....+....||+.+|..+.+|.+|...++++|.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            456777788999999999999999999987655411           223466788999999999999999988888774


Q ss_pred             HHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHH-HHHHHHHHH
Q 013549          175 LCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLL-AKKFYQKVI  253 (441)
Q Consensus       175 i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~e-A~~ly~rAL  253 (441)
                      +-.       .+..++..     .|.+++.+|+|+.|...|++++...|..-.+..-+..+.....++.+ ...+|.+.+
T Consensus       286 ~~~-------~N~KALyR-----rG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  286 LDP-------NNVKALYR-----RGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             cCC-------CchhHHHH-----HHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            321       12234443     47777899999999999999999766665565666655555555544 588999988


Q ss_pred             HH
Q 013549          254 EV  255 (441)
Q Consensus       254 ~i  255 (441)
                      .-
T Consensus       354 ~k  355 (397)
T KOG0543|consen  354 AK  355 (397)
T ss_pred             hc
Confidence            76

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.07  E-value=2.1e-05  Score=63.23  Aligned_cols=83  Identities=25%  Similarity=0.354  Sum_probs=62.4

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      +|+|++|+.++++.++....     .+ -...+.++|.+|+.+|+|.+|++.+++ +...+..+    ....-++.++.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~----~~~~l~a~~~~~   70 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP----DIHYLLARCLLK   70 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH----HHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH----HHHHHHHHHHHH
Confidence            57899999999999986633     22 455677799999999999999999998 44444322    233456788999


Q ss_pred             cCCcchhHHHHHHH
Q 013549          159 LGQDDTSSVVADKC  172 (441)
Q Consensus       159 ~G~~~~A~~l~~~~  172 (441)
                      +|++++|...++++
T Consensus        71 l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   71 LGKYEEAIKALEKA   84 (84)
T ss_dssp             TT-HHHHHHHHHHH
T ss_pred             hCCHHHHHHHHhcC
Confidence            99999998877653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.04  E-value=0.00037  Score=77.72  Aligned_cols=215  Identities=14%  Similarity=0.098  Sum_probs=156.3

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      .+..|..+.-||.+|++.-+...|-..|++|.++...    ++.+....+..|....+.++|...   ++...++.....
T Consensus       488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat----daeaaaa~adtyae~~~we~a~~I---~l~~~qka~a~~  560 (1238)
T KOG1127|consen  488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT----DAEAAAASADTYAEESTWEEAFEI---CLRAAQKAPAFA  560 (1238)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----hhhhHHHHHHHhhccccHHHHHHH---HHHHhhhchHHH
Confidence            5678889999999999988999999999999776532    234556677777777777766654   443333332100


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549          184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                             ......-.|.+|+..+++-+|...|+.++...+..-+....+|++|...|+|.-|...|-||....       
T Consensus       561 -------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------  626 (1238)
T KOG1127|consen  561 -------CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------  626 (1238)
T ss_pred             -------HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------
Confidence                   000001258889999999999999999999877777899999999999999999999999998772       


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhh
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSA  343 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~  343 (441)
                                 |+  ...+-.-.+.+.+++|+|.+|...+...+..+..-.-- --..+.++..++..+..+|=+-+|  
T Consensus       627 -----------P~--s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~-q~gLaE~~ir~akd~~~~gf~~ka--  690 (1238)
T KOG1127|consen  627 -----------PL--SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG-QNGLAESVIRDAKDSAITGFQKKA--  690 (1238)
T ss_pred             -----------cH--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhhhh--
Confidence                       11  12345678889999999999999999888777654211 123566666677777777766555  


Q ss_pred             hHHHHHHHHHHHHHhh
Q 013549          344 LLIQEGLYRRALEFLK  359 (441)
Q Consensus       344 ~~~Ae~ly~rAL~i~~  359 (441)
                          ...++++++++.
T Consensus       691 ----vd~~eksie~f~  702 (1238)
T KOG1127|consen  691 ----VDFFEKSIESFI  702 (1238)
T ss_pred             ----hHHHHHHHHHHH
Confidence                566677776654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.00  E-value=0.00059  Score=66.42  Aligned_cols=165  Identities=10%  Similarity=0.003  Sum_probs=108.4

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|+|++|+..|++.+...     |..+........+|.+|+.+|+|++|+..+++.+...+.+... ..++.-++..+..
T Consensus        45 ~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~  118 (243)
T PRK10866         45 DGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA  118 (243)
T ss_pred             CCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence            589999999999999866     4556778889999999999999999999999999998876433 2344555544433


Q ss_pred             cCC-----------cchhHHHHHHH---HHHHHhcCCCcchhhhhhHhHHHH----------HHHHHHHHcCCHHHHHHH
Q 013549          159 LGQ-----------DDTSSVVADKC---LQLCEKHKPENYKTYGAVNSRANA----------VKGLVELAHGNLESAESF  214 (441)
Q Consensus       159 ~G~-----------~~~A~~l~~~~---L~i~~~~~~~~~~~~~~l~~~a~a----------l~gl~~~~qG~y~eAe~l  214 (441)
                      +++           .+.-.....++   ++.+.+..|...- ......+...          ..+..|...|+|..|..-
T Consensus       119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-a~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r  197 (243)
T PRK10866        119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-TTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNR  197 (243)
T ss_pred             cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            331           11101111222   2223333332210 1111111111          135567789999999999


Q ss_pred             HHhhhhccCC---chHHHHHHHHHHHHccChHHHHHHHH
Q 013549          215 FKGLQEEEGC---TGSAALSYGEYLHATRNFLLAKKFYQ  250 (441)
Q Consensus       215 ~~~aL~~~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~  250 (441)
                      |+.+++.-+.   ...+...+...|...|..++|.....
T Consensus       198 ~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        198 VEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            9999994333   34566777889999999999977543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.00  E-value=0.0015  Score=71.33  Aligned_cols=209  Identities=10%  Similarity=0.032  Sum_probs=144.3

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|+|..+...||+++...   +|. |    ..++.++..|..-|.-..|+-+.+..+.+.+.--.+. .-+-.---++..
T Consensus       336 ~g~f~~lae~fE~~~~~~---~~~-~----e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s-~~Lmasklc~e~  406 (799)
T KOG4162|consen  336 CGQFEVLAEQFEQALPFS---FGE-H----ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS-VLLMASKLCIER  406 (799)
T ss_pred             HHHHHHHHHHHHHHhHhh---hhh-H----HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch-HHHHHHHHHHhc
Confidence            467888888888887644   222 2    2366777777788888888888887766663211111 111111224557


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcC---C--------HHHHHHHHHhhhhccCCchH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG---N--------LESAESFFKGLQEEEGCTGS  227 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG---~--------y~eAe~l~~~aL~~~~~~~~  227 (441)
                      .+.+.+++.|+.++++..+...       ..+..+..-..|++|..+-   +        ..++...+++|+...+..+.
T Consensus       407 l~~~eegldYA~kai~~~~~~~-------~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~  479 (799)
T KOG4162|consen  407 LKLVEEGLDYAQKAISLLGGQR-------SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL  479 (799)
T ss_pred             hhhhhhHHHHHHHHHHHhhhhh-------hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            7889999999999988664332       2344555556777775322   1        34566777777776666667


Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      +.+.++--|-.+++.+.|.+.-+++|+.   ..+     +           .+.+..-|+.++..+++|.+|+.+..-||
T Consensus       480 ~if~lalq~A~~R~l~sAl~~~~eaL~l---~~~-----~-----------~~~~whLLALvlSa~kr~~~Al~vvd~al  540 (799)
T KOG4162|consen  480 VIFYLALQYAEQRQLTSALDYAREALAL---NRG-----D-----------SAKAWHLLALVLSAQKRLKEALDVVDAAL  540 (799)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHh---cCC-----c-----------cHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            7777777788899999999999999998   333     1           23467899999999999999999999999


Q ss_pred             HHHHHhhCCCCchHH
Q 013549          308 TKTEELFGSHHPKVG  322 (441)
Q Consensus       308 ~i~e~~lG~~HP~va  322 (441)
                      +-+.+-++-.|-.+-
T Consensus       541 ~E~~~N~~l~~~~~~  555 (799)
T KOG4162|consen  541 EEFGDNHVLMDGKIH  555 (799)
T ss_pred             HHhhhhhhhchhhhh
Confidence            988886655554443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.012  Score=61.64  Aligned_cols=263  Identities=14%  Similarity=0.162  Sum_probs=172.7

Q ss_pred             CCCccccCCCchHHHHHHHH---HHHHhhhhc---cChhhHHHHHHHHHHhhhccccCCCCCchhH--------HHHHHH
Q 013549           48 GNGNRINGLNSNPVVLQMIN---YALSHARSQ---KSDESYSQGMLVLEQCLSTQPSDGQLAESWR--------GISLLA  113 (441)
Q Consensus        48 ~~~~~~~g~~h~~~a~~m~n---~a~~~~~~~---~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~--------a~~l~n  113 (441)
                      +-|+++.|..-|..-..+-+   ++++|--..   --.|=|++|..+-++++...++.-  ..+..        ..++-+
T Consensus       251 ~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk--q~d~~srilsm~km~~LE~  328 (629)
T KOG2300|consen  251 GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK--QADLMSRILSMFKMILLEH  328 (629)
T ss_pred             CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc--cccchhHHHHHHHHHHHHH
Confidence            34556887777776666555   444442111   134668899998888887755543  23322        234555


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh-----HHHHHHHHHHH-HhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          114 MSTLLYESGNYVEAIEKLQKVENFKNSILGVR-----VAAMEALAGLY-LQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       114 La~l~~~qG~y~eA~e~~~ral~i~~~~lg~~-----~~al~~La~l~-~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                      +..+---+|+|.+|++-...+.+.+.+..+.-     ..-+.-|.|+| ...+.|+.|+..+..|.+..+.         
T Consensus       329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~---------  399 (629)
T KOG2300|consen  329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES---------  399 (629)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH---------
Confidence            66666679999999999999888877665521     12344455654 4667788888888777655433         


Q ss_pred             hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCc-------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549          188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCT-------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK  260 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~-------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~  260 (441)
                      .++....+...+..|+.+|+-++--+..+..=..+...       +++.+-+|-....|++|.||.-+.++.|.+.   +
T Consensus       400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---n  476 (629)
T KOG2300|consen  400 IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---N  476 (629)
T ss_pred             HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---c
Confidence            34555566677888999887654322222211111100       1233445777889999999999999999993   1


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549          261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~  337 (441)
                      .   + .       .-..+.-.+.-||.+....|+-.|++.+..-+++...|.  +|||-..-+..-+-.+|...|.
T Consensus       477 a---e-d-------~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  477 A---E-D-------LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGE  540 (629)
T ss_pred             h---h-h-------HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCc
Confidence            1   0 0       111233356789999999999999999999999998876  6788777666666677777765

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.95  E-value=0.00055  Score=64.56  Aligned_cols=168  Identities=21%  Similarity=0.163  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549          107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT  186 (441)
Q Consensus       107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~  186 (441)
                      .+..+...|..+..+|+|.+|+..|++.+...+.+. ....+...++..+..+|++++|...+++.+...    |.+...
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----P~~~~~   78 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----PNSPKA   78 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TT-TTH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCcch
Confidence            567789999999999999999999999987776531 122466788999999999999998888776433    322211


Q ss_pred             hhhhHhHHHHHHHHHH-----------HHcCCHHHHHHHHHhhhhccCCch---HH--------------HHHHHHHHHH
Q 013549          187 YGAVNSRANAVKGLVE-----------LAHGNLESAESFFKGLQEEEGCTG---SA--------------ALSYGEYLHA  238 (441)
Q Consensus       187 ~~~l~~~a~al~gl~~-----------~~qG~y~eAe~l~~~aL~~~~~~~---~~--------------a~~~a~~~~~  238 (441)
                           ..+.-+.|+.+           ..++...+|...|+..+...|...   .+              -...|..|..
T Consensus        79 -----~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~  153 (203)
T PF13525_consen   79 -----DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK  153 (203)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -----hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 12222334443           234556789999999988333221   11              1235788999


Q ss_pred             ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013549          239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE  301 (441)
Q Consensus       239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~  301 (441)
                      +|+|.-|..-|+.+++-+   .+     +       +  ..-.++.-|...|..+|..+.|..
T Consensus       154 ~~~y~aA~~r~~~v~~~y---p~-----t-------~--~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  154 RGKYKAAIIRFQYVIENY---PD-----T-------P--AAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             TT-HHHHHHHHHHHHHHS---TT-----S-------H--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             cccHHHHHHHHHHHHHHC---CC-----C-------c--hHHHHHHHHHHHHHHhCChHHHHH
Confidence            999999999999998873   11     1       0  012378899999999999996643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.92  E-value=7.4e-05  Score=73.62  Aligned_cols=91  Identities=14%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA  279 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~  279 (441)
                      +.+|+|++|...|++.+...+..   +++..-+|.+|..+|+|++|...|++++.-+   .   +++.           .
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P---~s~~-----------~  216 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---P---KSPK-----------A  216 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---C---CCcc-----------h
Confidence            45899999999999999954433   5677888999999999999999999999873   1   1111           2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          280 LAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      ..++..+|.+|..+|++++|...|++.+..+
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            2468899999999999999999999988754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.91  E-value=4.2e-05  Score=79.69  Aligned_cols=67  Identities=15%  Similarity=0.064  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      ..+.+|||.+|..+|+|++|...|++||++     .|+|+....+++|+|.+|..+|++++|      ...|++|+++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEA------la~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKA------ADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHh
Confidence            457899999999999999999999999998     477777778899999999999999987      8999999997

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.89  E-value=0.0062  Score=67.76  Aligned_cols=262  Identities=15%  Similarity=0.106  Sum_probs=162.6

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHH------HHhhhhhhhh------------------hHHHHH---H----H
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKV------ENFKNSILGV------------------RVAAME---A----L  152 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra------l~i~~~~lg~------------------~~~al~---~----L  152 (441)
                      ++.....+.+=+.-+...|.-++|+++--+|      -++.+.. |.                  ....+.   .    -
T Consensus       343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~-~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~  421 (894)
T COG2909         343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQL-EWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ  421 (894)
T ss_pred             CCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhh-hhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence            4555666777777778888888888776543      2222111 10                  000000   0    1


Q ss_pred             HHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc--cC--CchH-
Q 013549          153 AGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE--EG--CTGS-  227 (441)
Q Consensus       153 a~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~--~~--~~~~-  227 (441)
                      +.....+++++++..+..++..-.....   ......+.....++.+.+.+.+|+++.|+++-+.++..  +.  .... 
T Consensus       422 aW~~~s~~r~~ea~~li~~l~~~l~~~~---~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         422 AWLLASQHRLAEAETLIARLEHFLKAPM---HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHhCcCc---ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            3345678899999888877754443321   11124555556778899999999999999999999992  11  1112 


Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      .....+.+.+.+|+|++|..+.+++.++.+....              .+..+.+.+--+.+...||+-..|+.  +++.
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--------------~~l~~~~~~~~s~il~~qGq~~~a~~--~~~~  562 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--------------YHLALWSLLQQSEILEAQGQVARAEQ--EKAF  562 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHHHHHhhHHHHHHH--HHHH
Confidence            2345688999999999999999999999643221              22345567788999999994433333  3344


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHH
Q 013549          308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE  387 (441)
Q Consensus       308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yae  387 (441)
                      ...+...++.-|.-+-.+---+.++...-+++.+      +.-.+..+++.....+..-+.--.+.+++.++..+|++++
T Consensus       563 ~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~------~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~  636 (894)
T COG2909         563 NLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLA------EAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK  636 (894)
T ss_pred             HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhh------hHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH
Confidence            4444445555555444444444555555556654      6666777777643222111122233578999999999999


Q ss_pred             HHHH
Q 013549          388 ALSV  391 (441)
Q Consensus       388 al~~  391 (441)
                      |...
T Consensus       637 A~~~  640 (894)
T COG2909         637 ALAQ  640 (894)
T ss_pred             HHHH
Confidence            8654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.87  E-value=0.0013  Score=62.00  Aligned_cols=172  Identities=15%  Similarity=0.100  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549           61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus        61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      .+..+-+.|....    ..|+|.+|+..|++.....     |.+|....+...+|..++.+|+|.+|+..+++-+...+.
T Consensus         4 ~~~~lY~~a~~~~----~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~   74 (203)
T PF13525_consen    4 TAEALYQKALEAL----QQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN   74 (203)
T ss_dssp             -HHHHHHHHHHHH----HCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred             CHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            3445556666652    3689999999999999866     678889999999999999999999999999999988877


Q ss_pred             hhhhhHHHHHHHHHHHHhcCC-----------cchhHHHHHHHHHHHHhcCCCc-ch-hhhhhHhHHH-------HHHHH
Q 013549          141 ILGVRVAAMEALAGLYLQLGQ-----------DDTSSVVADKCLQLCEKHKPEN-YK-TYGAVNSRAN-------AVKGL  200 (441)
Q Consensus       141 ~lg~~~~al~~La~l~~~~G~-----------~~~A~~l~~~~L~i~~~~~~~~-~~-~~~~l~~~a~-------al~gl  200 (441)
                      +.-. ..++.-++..+..+.+           ..+|...++..+    +..|.. +. ++........       .-.+.
T Consensus        75 ~~~~-~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li----~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~  149 (203)
T PF13525_consen   75 SPKA-DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI----KRYPNSEYAEEAKKRLAELRNRLAEHELYIAR  149 (203)
T ss_dssp             -TTH-HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH----HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccch-hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH----HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6322 2344444444443321           113333333332    333222 11 1111000000       11356


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCch---HHHHHHHHHHHHccChHHHH
Q 013549          201 VELAHGNLESAESFFKGLQEEEGCTG---SAALSYGEYLHATRNFLLAK  246 (441)
Q Consensus       201 ~~~~qG~y~eAe~l~~~aL~~~~~~~---~~a~~~a~~~~~qG~y~eA~  246 (441)
                      .|...|+|..|..-|+.+++.-+.+.   .+...+...|...|..+.|.
T Consensus       150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            67789999999999999999655443   44556688888999888554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.87  E-value=0.00032  Score=75.47  Aligned_cols=129  Identities=10%  Similarity=0.055  Sum_probs=88.8

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHhhhhccCCchHHHHHHHHHHHHc--------cChHHHHHHHHHHHHHHHhhcccCC
Q 013549          196 AVKGLVELAHGN---LESAESFFKGLQEEEGCTGSAALSYGEYLHAT--------RNFLLAKKFYQKVIEVLAEQKDFSD  264 (441)
Q Consensus       196 al~gl~~~~qG~---y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q--------G~y~eA~~ly~rAL~i~~~~~~~~~  264 (441)
                      .+.|.-++.+++   +++|..+|+++++.++....+.-.++.++..+        ++..+|....++++++.   ..   
T Consensus       343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~---~~---  416 (517)
T PRK10153        343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP---EL---  416 (517)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc---cC---
Confidence            355666655554   88999999999996655543333333333222        23345555555555441   11   


Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549          265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL  344 (441)
Q Consensus       265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~  344 (441)
                        ..          ...++.-+|..+..+|++++|+..|+||+.+.        |+ +..+..+|.+|..+|++++|   
T Consensus       417 --~~----------~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA---  472 (517)
T PRK10153        417 --NV----------LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLA---  472 (517)
T ss_pred             --cC----------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHH---
Confidence              00          11235567888888999999999999999987        55 67999999999999999987   


Q ss_pred             HHHHHHHHHHHHH
Q 013549          345 LIQEGLYRRALEF  357 (441)
Q Consensus       345 ~~Ae~ly~rAL~i  357 (441)
                         ...|++|+.+
T Consensus       473 ---~~~~~~A~~L  482 (517)
T PRK10153        473 ---ADAYSTAFNL  482 (517)
T ss_pred             ---HHHHHHHHhc
Confidence               8999999765

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.86  E-value=0.0011  Score=71.25  Aligned_cols=222  Identities=17%  Similarity=0.151  Sum_probs=149.7

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      +.|...+...++.|.        .+|..+.++.-.|..+...|+-+||-++....+.....+                  
T Consensus        21 kQYkkgLK~~~~iL~--------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------------------   74 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILK--------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------------------   74 (700)
T ss_pred             HHHHhHHHHHHHHHH--------hCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc------------------
Confidence            345555555555554        345556677778888888888888877766543322111                  


Q ss_pred             CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549          160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT  239 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q  239 (441)
                                .-|           |           ...|+++..-.+|++|+++|+.||..++....+...++.+...+
T Consensus        75 ----------~vC-----------w-----------Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm  122 (700)
T KOG1156|consen   75 ----------HVC-----------W-----------HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM  122 (700)
T ss_pred             ----------chh-----------H-----------HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                      011           2           24588888899999999999999997777767777777777778


Q ss_pred             cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549          240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP  319 (441)
Q Consensus       240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP  319 (441)
                      |+|+-...--.+-|+..   .+                 .-++...++..+.-.|+|..|.+..+.-..-.+     .-|
T Consensus       123 Rd~~~~~~tr~~LLql~---~~-----------------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-----~~~  177 (700)
T KOG1156|consen  123 RDYEGYLETRNQLLQLR---PS-----------------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-----TSP  177 (700)
T ss_pred             HhhhhHHHHHHHHHHhh---hh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCC
Confidence            99988777777767662   11                 124567888899999999999888776555544     456


Q ss_pred             hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          320 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       320 ~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      +.-..=.....+|+.|-..+.        +.++.|+++.....+.--+-.......+.++...+++++|..++
T Consensus       178 s~~~~e~se~~Ly~n~i~~E~--------g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y  242 (700)
T KOG1156|consen  178 SKEDYEHSELLLYQNQILIEA--------GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY  242 (700)
T ss_pred             CHHHHHHHHHHHHHHHHHHHc--------ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence            666666667788888765543        44888988874322222222334445667778888888887765

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.83  E-value=0.00095  Score=72.44  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHh---------hCCCCchHH-HHHHHHHHHHHHhhchhhhh
Q 013549          279 ALAATFALGQLEAHMGNFGDAEEIL------TRTLTKTEEL---------FGSHHPKVG-VVLTCLALMFRNKAMQEHSS  342 (441)
Q Consensus       279 ~~~al~nLg~ly~~qG~y~eAe~l~------~rAL~i~e~~---------lG~~HP~va-~~l~nLa~ly~~qG~~eeA~  342 (441)
                      ++..+..-++=+..+|+|.|||.+|      .+|+.+|.+.         .|..||+.. .+.-.+|.-|...|+...| 
T Consensus       823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaa-  901 (1636)
T KOG3616|consen  823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAA-  901 (1636)
T ss_pred             HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHH-
Confidence            3445567788888999999999998      5788888764         577888855 6788899999999997765 


Q ss_pred             hhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchhhHHHHHHHHHHHHHh
Q 013549          343 ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWR  411 (441)
Q Consensus       343 ~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~~eae~~~~~a~~~~~  411 (441)
                           |..|-+|-+..           ..+|    +|.+.+.+.+|..+-  |..-|+.|.+...-+|.
T Consensus       902 -----e~~flea~d~k-----------aavn----myk~s~lw~dayria--ktegg~n~~k~v~flwa  948 (1636)
T KOG3616|consen  902 -----EEHFLEAGDFK-----------AAVN----MYKASELWEDAYRIA--KTEGGANAEKHVAFLWA  948 (1636)
T ss_pred             -----HHHHHhhhhHH-----------HHHH----HhhhhhhHHHHHHHH--hccccccHHHHHHHHHH
Confidence                 77776664432           1222    566777777776653  12224556555555553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.80  E-value=0.0055  Score=65.97  Aligned_cols=118  Identities=11%  Similarity=0.067  Sum_probs=83.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh-----------------
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ-----------------  259 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~-----------------  259 (441)
                      +++..|...|+|++|..+.+++|...|.....-..-|.+|...|++.+|...++.|-.+=...                 
T Consensus       199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~  278 (517)
T PF12569_consen  199 FLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI  278 (517)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH
Confidence            445556689999999999999999766666666677999999999999999888776430000                 


Q ss_pred             -------cccCCCCCccccccchhHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          260 -------KDFSDMNTLGSCNMALEEV-ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       260 -------~~~~~~~~lg~~~~~~~~~-~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                             ..|..++. ++... ..++ -++....-|..|..+|+|..|...|...+.+++...-+
T Consensus       279 e~A~~~~~~Ftr~~~-~~~~~-L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D  341 (517)
T PF12569_consen  279 EEAEKTASLFTREDV-DPLSN-LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED  341 (517)
T ss_pred             HHHHHHHHhhcCCCC-CcccC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence                   00001111 11111 1111 12334678999999999999999999999999988653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.80  E-value=0.00046  Score=64.18  Aligned_cols=116  Identities=13%  Similarity=0.184  Sum_probs=87.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhc-cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          199 GLVELAHGNLESAESFFKGLQEE-EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      +.+....|+|.||+++|++++.+ ....+...++++......+++.+|.+..++..+-   .      +..    .+|+ 
T Consensus        96 a~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~---~------pa~----r~pd-  161 (251)
T COG4700          96 ANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY---N------PAF----RSPD-  161 (251)
T ss_pred             HHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc---C------Ccc----CCCC-
Confidence            44445799999999999999994 3334556788999999999999999999887665   1      111    1122 


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                          .+.-+|.+|..+|+|.+||.-|+.+++-+-      -|.-...   -+....+||+.++|
T Consensus       162 ----~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~---Y~e~La~qgr~~ea  212 (251)
T COG4700         162 ----GHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIY---YAEMLAKQGRLREA  212 (251)
T ss_pred             ----chHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHH---HHHHHHHhcchhHH
Confidence                256889999999999999999999998652      1222223   35888999998887

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.79  E-value=0.0005  Score=74.66  Aligned_cols=204  Identities=17%  Similarity=0.147  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHH---------HHHhcC-
Q 013549          111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ---------LCEKHK-  180 (441)
Q Consensus       111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~---------i~~~~~-  180 (441)
                      ---++.++.+.|--.+|+..|+|-            ..|...+.+|...|+..+|+....+-++         +++... 
T Consensus       401 q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhcc
Confidence            344666777778778887777763            1344445555566655555444333221         000000 


Q ss_pred             -CCcch----hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          181 -PENYK----TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       181 -~~~~~----~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                       +.-|+    -......+++.-.|.....+++|+++..+|++++...+-...+.+++|.+....+++..|...|.+.+..
T Consensus       469 d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL  548 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL  548 (777)
T ss_pred             ChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence             00000    0112222222222333345788888888888888866656667788888888888888888888888876


Q ss_pred             HHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549          256 LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK  335 (441)
Q Consensus       256 ~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q  335 (441)
                         .               |++  ..+-|||+..|...|+-.+|-..+++||+-.     -+|+.+=..+.   .+-..-
T Consensus       549 ---~---------------Pd~--~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-----~~~w~iWENym---lvsvdv  600 (777)
T KOG1128|consen  549 ---E---------------PDN--AEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-----YQHWQIWENYM---LVSVDV  600 (777)
T ss_pred             ---C---------------CCc--hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-----CCCCeeeechh---hhhhhc
Confidence               1               111  2357888888888888888888888888654     67888776666   566777


Q ss_pred             hchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          336 AMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       336 G~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      |.+++|      ...|.|-+++.+.
T Consensus       601 ge~eda------~~A~~rll~~~~~  619 (777)
T KOG1128|consen  601 GEFEDA------IKAYHRLLDLRKK  619 (777)
T ss_pred             ccHHHH------HHHHHHHHHhhhh
Confidence            887776      7888888888754

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.79  E-value=0.013  Score=59.13  Aligned_cols=226  Identities=12%  Similarity=0.104  Sum_probs=157.0

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|.|..|+.-|..|.+        -.|.-=.++...|++|..+|+-.-|+.-+.+++.+.+.-.|    +.-..+.+++
T Consensus        50 a~~Q~sDALt~yHaAve--------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~----ARiQRg~vll  117 (504)
T KOG0624|consen   50 ARGQLSDALTHYHAAVE--------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA----ARIQRGVVLL  117 (504)
T ss_pred             HhhhHHHHHHHHHHHHc--------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH----HHHHhchhhh
Confidence            35789999999999995        35667788999999999999999999999999999877544    3344577888


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhH--hHHHHHH--HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVN--SRANAVK--GLVELAHGNLESAESFFKGLQEEEGCTGSAALSYG  233 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~--~~a~al~--gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a  233 (441)
                      .+|++++|+.=++..|+---.... ..+.+.-+.  .-...+.  ..-+...|++..|+++..+.|..-+-....-.--+
T Consensus       118 K~Gele~A~~DF~~vl~~~~s~~~-~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra  196 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQHEPSNGL-VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA  196 (504)
T ss_pred             hcccHHHHHHHHHHHHhcCCCcch-hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence            999999999888877632111100 000000000  0000011  11234689999999999999986543333333347


Q ss_pred             HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      .+|...|+...|+.-.+.|-.+   ...                 ....+..+.++++..|+..++..-.+++|.     
T Consensus       197 kc~i~~~e~k~AI~Dlk~askL---s~D-----------------nTe~~ykis~L~Y~vgd~~~sL~~iRECLK-----  251 (504)
T KOG0624|consen  197 KCYIAEGEPKKAIHDLKQASKL---SQD-----------------NTEGHYKISQLLYTVGDAENSLKEIRECLK-----  251 (504)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhc---ccc-----------------chHHHHHHHHHHHhhhhHHHHHHHHHHHHc-----
Confidence            7889999999999988887665   111                 123578999999999999999888887775     


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          314 FGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       314 lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      |.|+|-.--..+-.|-.+-......+++
T Consensus       252 ldpdHK~Cf~~YKklkKv~K~les~e~~  279 (504)
T KOG0624|consen  252 LDPDHKLCFPFYKKLKKVVKSLESAEQA  279 (504)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7899987766666666555544444443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.77  E-value=0.0053  Score=66.14  Aligned_cols=277  Identities=16%  Similarity=0.185  Sum_probs=164.7

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|++.+-+..|..|.....-.  ..+-+..+....+|.+|..-|+.+.|...++++..+--..+..-...|-+-+..-+.
T Consensus       360 e~~~~~~i~tyteAv~~vdP~--ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr  437 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPK--KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR  437 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcc--cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence            466788888888887633111  124456778899999999999999999999999776654432222334334433333


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHH-HHHH-----HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA-NAVK-----GLVELAHGNLESAESFFKGLQEEEGCTGSAALSY  232 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a-~al~-----gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~  232 (441)
                      ..+.+.|..+.+++..+=....-..+++......+. +++.     .-+.-..|-++.-...|.+.++-.-.++....||
T Consensus       438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny  517 (835)
T KOG2047|consen  438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY  517 (835)
T ss_pred             hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            334444444444443220000000011112222221 1221     1222368888889999999999767788899999


Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~-al~nLg~ly~~qG~y~eAe~l~~rAL~i~e  311 (441)
                      |.++..-.-|++|...|+|-+.++   +   -+..+          .+. ++..-..--..--+.+.|..+|+|||+.. 
T Consensus       518 AmfLEeh~yfeesFk~YErgI~LF---k---~p~v~----------diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-  580 (835)
T KOG2047|consen  518 AMFLEEHKYFEESFKAYERGISLF---K---WPNVY----------DIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-  580 (835)
T ss_pred             HHHHHhhHHHHHHHHHHHcCCccC---C---CccHH----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence            999999999999999999999884   1   11111          112 11111111222347889999999999832 


Q ss_pred             HhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHHH-----H---HHHh
Q 013549          312 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDI-----V---ALAR  382 (441)
Q Consensus       312 ~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~~-----~---~~~~  382 (441)
                          |  |.-+.++.   .+|..   +||=      -+|-++|++|++ +...-++.-.-.+.|+=+     +   ...+
T Consensus       581 ----p--p~~aKtiy---LlYA~---lEEe------~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR  642 (835)
T KOG2047|consen  581 ----P--PEHAKTIY---LLYAK---LEEE------HGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTR  642 (835)
T ss_pred             ----C--HHHHHHHH---HHHHH---HHHH------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence                2  66666665   55643   4442      689999999985 333334432222223221     1   2356


Q ss_pred             ccHHHHHHHh
Q 013549          383 GGYAEALSVQ  392 (441)
Q Consensus       383 g~yaeal~~~  392 (441)
                      +-|.+|+..-
T Consensus       643 ~iYekaIe~L  652 (835)
T KOG2047|consen  643 EIYEKAIESL  652 (835)
T ss_pred             HHHHHHHHhC
Confidence            7788887764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.77  E-value=0.00038  Score=72.62  Aligned_cols=114  Identities=18%  Similarity=0.099  Sum_probs=90.2

Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHH
Q 013549          200 LVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA  279 (441)
Q Consensus       200 l~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~  279 (441)
                      +.++..|++++|++.++..++..+..+......+.++...+++.+|.+.+++++...        ++.            
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------P~~------------  373 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--------PNS------------  373 (484)
T ss_pred             HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCc------------
Confidence            445568889999999999888666555555556889999999999999999999871        111            


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      ..--.|+|++|...|++++|+..+.+.+.        +.|+-...+.-||..|..||+..++
T Consensus       374 ~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         374 PLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             cHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHH
Confidence            01236999999999999999998887763        5677777888888999999987776

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.75  E-value=0.014  Score=50.96  Aligned_cols=196  Identities=22%  Similarity=0.229  Sum_probs=141.5

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH-HH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAG-LY  156 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~-l~  156 (441)
                      ..+.+.+++..++..+..      ...+.....+..++..+...++|.++++.+..++........    ....... ++
T Consensus        71 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  140 (291)
T COG0457          71 KLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL----AEALLALGAL  140 (291)
T ss_pred             HcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch----HHHHHHHHHH
Confidence            356788999999888865      245678889999999999999999999999998765543211    1111222 78


Q ss_pred             HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-chHHHHHHHHH
Q 013549          157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC-TGSAALSYGEY  235 (441)
Q Consensus       157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~-~~~~a~~~a~~  235 (441)
                      ...|+++.+...+.+++.+.....  ..  ....     ...+..+...|++++|...+.+++...+. ......+++..
T Consensus       141 ~~~~~~~~a~~~~~~~~~~~~~~~--~~--~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  211 (291)
T COG0457         141 YELGDYEEALELYEKALELDPELN--EL--AEAL-----LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL  211 (291)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcc--ch--HHHH-----HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHH
Confidence            889999999999988854111000  00  0011     01222256799999999999999995544 45566778889


Q ss_pred             HHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          236 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       236 ~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      +..+|++.+|...+.+++...   ..                 .......++..+...|++++|...+.+++.....
T Consensus       212 ~~~~~~~~~a~~~~~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         212 YLKLGKYEEALEYYEKALELD---PD-----------------NAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHcccHHHHHHHHHHHHhhC---cc-----------------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999999882   11                 0123567777777888899999999999988776

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.75  E-value=0.019  Score=56.82  Aligned_cols=136  Identities=15%  Similarity=0.096  Sum_probs=94.9

Q ss_pred             cChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhhhhh-----h-----hhh
Q 013549           77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSI-----L-----GVR  145 (441)
Q Consensus        77 ~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG-~y~eA~e~~~ral~i~~~~-----l-----g~~  145 (441)
                      +.+|+++.|..++.|+-..........-..++..+.|+|.-...++ +|++|...++++.++.+..     .     ..+
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            3579999999999999987754444556679999999999999999 9999999999999986441     1     123


Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 013549          146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE  221 (441)
Q Consensus       146 ~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~  221 (441)
                      ...+..|+..|.+.+.++-... +.+.++..+...+.++   .........+     ...++.++++..+.+.+..
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~~~---~~~~L~l~il-----~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGNKP---EVFLLKLEIL-----LKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCCCc---HHHHHHHHHH-----hccCChhHHHHHHHHHHHh
Confidence            4577778888988776643222 3444444555554322   1111111111     2378999999999999883

It is also involved in sporulation [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.73  E-value=0.0016  Score=70.83  Aligned_cols=137  Identities=12%  Similarity=-0.015  Sum_probs=104.5

Q ss_pred             HHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHH
Q 013549          154 GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYG  233 (441)
Q Consensus       154 ~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a  233 (441)
                      .+....+++.++-+.++.++++..-+..       ...     ..|-+.+..+++..|-..|.+++..++.+..+.+|++
T Consensus       493 ~~~~~~~~fs~~~~hle~sl~~nplq~~-------~wf-----~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls  560 (777)
T KOG1128|consen  493 LLILSNKDFSEADKHLERSLEINPLQLG-------TWF-----GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS  560 (777)
T ss_pred             cccccchhHHHHHHHHHHHhhcCccchh-------HHH-----hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence            3334457777777766666544322221       111     2466778999999999999999998888889999999


Q ss_pred             HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      ..|...|+-.+|--.+++||.-   +..          |.       ..--|.-.+..+.|.+++|.+.|.|-+.+....
T Consensus       561 ~ayi~~~~k~ra~~~l~EAlKc---n~~----------~w-------~iWENymlvsvdvge~eda~~A~~rll~~~~~~  620 (777)
T KOG1128|consen  561 TAYIRLKKKKRAFRKLKEALKC---NYQ----------HW-------QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY  620 (777)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhc---CCC----------CC-------eeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999976   211          11       112477778899999999999999999999998


Q ss_pred             hCCCCchHH
Q 013549          314 FGSHHPKVG  322 (441)
Q Consensus       314 lG~~HP~va  322 (441)
                      ..++||...
T Consensus       621 ~d~~vl~~i  629 (777)
T KOG1128|consen  621 KDDEVLLII  629 (777)
T ss_pred             ccchhhHHH
Confidence            877776543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.73  E-value=6.5e-05  Score=50.97  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      ++++||.+|..+|+|++|+++|+++|.+.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            47899999999999999999999999888764

>PRK15331 chaperone protein SicA; Provisional

Probab=97.72  E-value=0.00029  Score=64.32  Aligned_cols=86  Identities=19%  Similarity=0.231  Sum_probs=70.1

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      ..+|+|++|+.+|+-..--.+....-...+|.+++.+|+|++|+++|-.|..+   .+.     .+.            .
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---~~~-----dp~------------p  107 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---LKN-----DYR------------P  107 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccC-----CCC------------c
Confidence            47999999999998766633334455688999999999999999999999988   222     111            1


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ....|+.|..+|+.++|+..|+.+++
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            46889999999999999999999988

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.70  E-value=0.0029  Score=61.61  Aligned_cols=171  Identities=15%  Similarity=0.133  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549          107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT  186 (441)
Q Consensus       107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~  186 (441)
                      ....+...|..+...|+|++|++.|++.+...+.. .....+...++.+|..+++|++|...+++.++..    |.++..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----P~~~~~  105 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----PTHPNI  105 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----cCCCch
Confidence            45667888999999999999999999998887754 2233456789999999999999999999887544    322211


Q ss_pred             hhhhHhHHHHHHHHHHHHcC------------------CHHHHHHHHHhhhhccCCch---H-----------H---HHH
Q 013549          187 YGAVNSRANAVKGLVELAHG------------------NLESAESFFKGLQEEEGCTG---S-----------A---ALS  231 (441)
Q Consensus       187 ~~~l~~~a~al~gl~~~~qG------------------~y~eAe~l~~~aL~~~~~~~---~-----------~---a~~  231 (441)
                           ..+....|+.+...+                  ...+|..-|++.++..|...   .           .   -..
T Consensus       106 -----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~  180 (243)
T PRK10866        106 -----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS  180 (243)
T ss_pred             -----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence                 122233454432222                  23567788888888433221   0           0   123


Q ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          232 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT  304 (441)
Q Consensus       232 ~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~  304 (441)
                      .|..|...|+|.-|..=++.+++-.   .+   .+.           .-.++.-|...|..+|.-++|.+...
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Y---p~---t~~-----------~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDY---PD---TQA-----------TRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHC---CC---Cch-----------HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            5778999999999999999888763   11   111           22478899999999999999987653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.66  E-value=0.00094  Score=61.93  Aligned_cols=132  Identities=17%  Similarity=0.195  Sum_probs=103.5

Q ss_pred             HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCc
Q 013549           83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD  162 (441)
Q Consensus        83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~  162 (441)
                      ++-+.-++.-|...++.+|++  ++-+.+..+|..|.+.|++++|++.|.++.+-+.. .+.....+-++..+....|++
T Consensus        13 ~~~~~~Le~elk~~~~n~~ke--sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~   89 (177)
T PF10602_consen   13 AEELEKLEAELKDAKSNLGKE--SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDW   89 (177)
T ss_pred             HHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCH
Confidence            344556666666666666554  69999999999999999999999999998776544 455556677788888889999


Q ss_pred             chhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Q 013549          163 DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG  223 (441)
Q Consensus       163 ~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~  223 (441)
                      .....+..++-.+.+..++  |    ....+.+...|++++.+|+|.+|-.+|-.++.+..
T Consensus        90 ~~v~~~i~ka~~~~~~~~d--~----~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen   90 SHVEKYIEKAESLIEKGGD--W----ERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHHHHHHHHhccch--H----HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence            9999999998777766442  2    34455566789999999999999999999988543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.024  Score=62.72  Aligned_cols=170  Identities=19%  Similarity=0.227  Sum_probs=96.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHH
Q 013549          115 STLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA  194 (441)
Q Consensus       115 a~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a  194 (441)
                      |.+-...|..+||+.+|.+.    ++        ..-|.-+|..+|.+++|..+       .+....+|..  .+...++
T Consensus       807 AvLAieLgMlEeA~~lYr~c----kR--------~DLlNKlyQs~g~w~eA~ei-------AE~~DRiHLr--~Tyy~yA  865 (1416)
T KOG3617|consen  807 AVLAIELGMLEEALILYRQC----KR--------YDLLNKLYQSQGMWSEAFEI-------AETKDRIHLR--NTYYNYA  865 (1416)
T ss_pred             HHHHHHHhhHHHHHHHHHHH----HH--------HHHHHHHHHhcccHHHHHHH-------Hhhccceehh--hhHHHHH
Confidence            44445556666666666653    11        11133456677776555443       3333322210  1111222


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhh----------ccC-Cc--------hHHHHH-HHHHHHHccChHHHHHHHHHHHH
Q 013549          195 NAVKGLVELAHGNLESAESFFKGLQE----------EEG-CT--------GSAALS-YGEYLHATRNFLLAKKFYQKVIE  254 (441)
Q Consensus       195 ~al~gl~~~~qG~y~eAe~l~~~aL~----------~~~-~~--------~~~a~~-~a~~~~~qG~y~eA~~ly~rAL~  254 (441)
                      +.|     -..|+.+.|.++|+++-.          ..+ ..        .....+ +|..+.++|+.+-|+.+|..|-+
T Consensus       866 ~~L-----ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  866 KYL-----EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHH-----HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence            221     257888999999998744          111 00        112233 47778899999999999999988


Q ss_pred             HHHhhcccCCCCCcccccc----chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          255 VLAEQKDFSDMNTLGSCNM----ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       255 i~~~~~~~~~~~~lg~~~~----~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      -+...+-   +-..|....    ..+.-..++-+.||.-|.++|++.+|..+|+||-..-..+
T Consensus       941 ~fs~VrI---~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen  941 YFSMVRI---KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred             hhhheee---EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            7643321   111221000    0000123455689999999999999999999987765555

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.66  E-value=0.0022  Score=64.67  Aligned_cols=218  Identities=11%  Similarity=0.118  Sum_probs=154.0

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|++.-|+++..+.|+|.        |.-+..+-..+..|...|+...||.-.+.+.++....    ....+.+..+++
T Consensus       167 ~~GD~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn----Te~~ykis~L~Y  234 (504)
T KOG0624|consen  167 GSGDCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN----TEGHYKISQLLY  234 (504)
T ss_pred             cCCchhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc----hHHHHHHHHHHH
Confidence            4689999999999999876        4457778888999999999999999999887765433    346788889999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhh---hhhHhHHHHHHH-HHHHHcCCHHHHHHHHHhhhhccCCchHHHH---
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTY---GAVNSRANAVKG-LVELAHGNLESAESFFKGLQEEEGCTGSAAL---  230 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~---~~l~~~a~al~g-l~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~---  230 (441)
                      ..|+...++...+.||++-    |+|..=.   ..+....+.+.. -....+++|.++..-++++++.++.....-.   
T Consensus       235 ~vgd~~~sL~~iRECLKld----pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~  310 (504)
T KOG0624|consen  235 TVGDAENSLKEIRECLKLD----PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGF  310 (504)
T ss_pred             hhhhHHHHHHHHHHHHccC----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence            9999999988888887542    2221100   111111111211 1123689999999999999996654322211   


Q ss_pred             -HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          231 -SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       231 -~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                       .+..++..-|++.||+.-..++|++-                  |+  .+.+++.-|..|.--..||+|+.-|++|++.
T Consensus       311 r~~c~C~~~d~~~~eAiqqC~evL~~d------------------~~--dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  311 RVLCTCYREDEQFGEAIQQCKEVLDID------------------PD--DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             heeeecccccCCHHHHHHHHHHHHhcC------------------ch--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence             23445667899999999999999981                  11  2567899999999999999999999999875


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549          310 TEELFGSHHPKVGVVLTCLALMFRNKA  336 (441)
Q Consensus       310 ~e~~lG~~HP~va~~l~nLa~ly~~qG  336 (441)
                      -     ++|-.+-.-+..--.+...-|
T Consensus       371 n-----~sn~~~reGle~Akrlkkqs~  392 (504)
T KOG0624|consen  371 N-----ESNTRAREGLERAKRLKKQSG  392 (504)
T ss_pred             C-----cccHHHHHHHHHHHHHHHHhc
Confidence            4     455555555543333433333

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.0026  Score=64.33  Aligned_cols=252  Identities=16%  Similarity=0.124  Sum_probs=147.7

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      -+|.-|+.++|-.+..     +.+..  -.+-.-+|..+++.|+|++|...|.-...-.    ......+-+|+-++..+
T Consensus        36 rDytGAislLefk~~~-----~~EEE--~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~~~el~vnLAcc~FyL  104 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNL-----DREEE--DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DAPAELGVNLACCKFYL  104 (557)
T ss_pred             ccchhHHHHHHHhhcc-----chhhh--HHHHHHHHHHHHhhccHHHHHHHHHHHhccC----CCCcccchhHHHHHHHH
Confidence            4688999999998843     22322  4556678999999999999999998764411    11122345788888888


Q ss_pred             CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549          160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT  239 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q  239 (441)
                      |.|.+|.....+|       ..      ..+..|  .+..+++ ..|+=++=.. |.+.|.+   +..--+++|.+.+.+
T Consensus       105 g~Y~eA~~~~~ka-------~k------~pL~~R--Llfhlah-klndEk~~~~-fh~~LqD---~~EdqLSLAsvhYmR  164 (557)
T KOG3785|consen  105 GQYIEAKSIAEKA-------PK------TPLCIR--LLFHLAH-KLNDEKRILT-FHSSLQD---TLEDQLSLASVHYMR  164 (557)
T ss_pred             HHHHHHHHHHhhC-------CC------ChHHHH--HHHHHHH-HhCcHHHHHH-HHHHHhh---hHHHHHhHHHHHHHH
Confidence            9998887665544       11      123222  1222222 3444333223 3333321   112236788888899


Q ss_pred             cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549          240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH  318 (441)
Q Consensus       240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~-nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H  318 (441)
                      -.|.||++.|.|+|.-   .+.     .             .++| ++|..|.++.-|+-+-+.    |+.+-+    .|
T Consensus       165 ~HYQeAIdvYkrvL~d---n~e-----y-------------~alNVy~ALCyyKlDYydvsqev----l~vYL~----q~  215 (557)
T KOG3785|consen  165 MHYQEAIDVYKRVLQD---NPE-----Y-------------IALNVYMALCYYKLDYYDVSQEV----LKVYLR----QF  215 (557)
T ss_pred             HHHHHHHHHHHHHHhc---Chh-----h-------------hhhHHHHHHHHHhcchhhhHHHH----HHHHHH----hC
Confidence            9999999999998854   222     2             2344 899999999999987654    445554    45


Q ss_pred             chHHHHHHHHHHHHHH--hhchhhh----------hhhHHHHHHHHHHHHHhhcCCCC----Ccch----HhhhccHHHH
Q 013549          319 PKVGVVLTCLALMFRN--KAMQEHS----------SALLIQEGLYRRALEFLKAPPLE----SEGV----ETKVDRTDIV  378 (441)
Q Consensus       319 P~va~~l~nLa~ly~~--qG~~eeA----------~~~~~Ae~ly~rAL~i~~~~~~~----~~~~----~~~l~nl~~~  378 (441)
                      |+.-...|-.+-...+  .|+..++          ++|.+++.+.+--|-+++- +.+    -|+.    -..--|+.+-
T Consensus       216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn-gEgALqVLP~L~~~IPEARlNL~iY  294 (557)
T KOG3785|consen  216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN-GEGALQVLPSLMKHIPEARLNLIIY  294 (557)
T ss_pred             CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC-CccHHHhchHHHhhChHhhhhheee
Confidence            5544444433332222  2333322          2233455555544443321 111    1221    1222377788


Q ss_pred             HHHhccHHHHHHHh
Q 013549          379 ALARGGYAEALSVQ  392 (441)
Q Consensus       379 ~~~~g~yaeal~~~  392 (441)
                      |+.|++..||..+-
T Consensus       295 yL~q~dVqeA~~L~  308 (557)
T KOG3785|consen  295 YLNQNDVQEAISLC  308 (557)
T ss_pred             ecccccHHHHHHHH
Confidence            99999999997753

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.65  E-value=0.0029  Score=66.20  Aligned_cols=147  Identities=16%  Similarity=0.027  Sum_probs=106.0

Q ss_pred             HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHH
Q 013549          150 EALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAA  229 (441)
Q Consensus       150 ~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a  229 (441)
                      +..+--+++.|+++.|+..++..+    +..|..        .....+.+-+++..+++++|.+.|+++++-.+..+..-
T Consensus       310 YG~A~~~~~~~~~d~A~~~l~~L~----~~~P~N--------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~  377 (484)
T COG4783         310 YGRALQTYLAGQYDEALKLLQPLI----AAQPDN--------PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ  377 (484)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHH----HhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHH
Confidence            344444666777777776666532    222211        12233567778899999999999999999666557778


Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      .+||.+|...|++.+|+...++.+.-   .     +..       |     ....-||+.|..+|+-.+|..        
T Consensus       378 ~~~a~all~~g~~~eai~~L~~~~~~---~-----p~d-------p-----~~w~~LAqay~~~g~~~~a~~--------  429 (484)
T COG4783         378 LNLAQALLKGGKPQEAIRILNRYLFN---D-----PED-------P-----NGWDLLAQAYAELGNRAEALL--------  429 (484)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhc---C-----CCC-------c-----hHHHHHHHHHHHhCchHHHHH--------
Confidence            99999999999999999888886643   1     111       1     246789999999999887754        


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          310 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       310 ~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                                       ..|..|...|++++|      ..++.+|.+-.+
T Consensus       430 -----------------A~AE~~~~~G~~~~A------~~~l~~A~~~~~  456 (484)
T COG4783         430 -----------------ARAEGYALAGRLEQA------IIFLMRASQQVK  456 (484)
T ss_pred             -----------------HHHHHHHhCCCHHHH------HHHHHHHHHhcc
Confidence                             446778899999987      677777766654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.63  E-value=0.0017  Score=60.50  Aligned_cols=132  Identities=19%  Similarity=0.179  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549          110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA  189 (441)
Q Consensus       110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~  189 (441)
                      -...||..+-+.|+|.||+++|++++.--   +..+...+-.++......++..++....++..+    .++.--.-...
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~---fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e----~~pa~r~pd~~  163 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGI---FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME----YNPAFRSPDGH  163 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccc---cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh----cCCccCCCCch
Confidence            35678889999999999999999997543   223344555666666677777777666655432    22110000011


Q ss_pred             hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          190 VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      +      +.+.++..+|+|++|+.-|+.+++.-+ -+..-.-|++.+-+||+.+||..-|....+-
T Consensus       164 L------l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         164 L------LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             H------HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            2      456677799999999999999999433 2234567899999999999999888776655

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.60  E-value=0.027  Score=62.93  Aligned_cols=240  Identities=13%  Similarity=0.014  Sum_probs=153.9

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchh----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh-hhhhHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESW----RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-LGVRVAAMEAL  152 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~----~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~-lg~~~~al~~L  152 (441)
                      ++.+|+||..+..+........   .|+.    .|.-..--|.+...+|+.++|+.+.+.++...+.. ...++..+.++
T Consensus       427 s~~r~~ea~~li~~l~~~l~~~---~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         427 SQHRLAEAETLIARLEHFLKAP---MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HccChHHHHHHHHHHHHHhCcC---cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            6789999999999987755331   2222    22222233556778999999999999997665432 22345566778


Q ss_pred             HHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC--HHHHHHHHHhhhh----ccCCch
Q 013549          153 AGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN--LESAESFFKGLQE----EEGCTG  226 (441)
Q Consensus       153 a~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~--y~eAe~l~~~aL~----~~~~~~  226 (441)
                      +.+..-.|++++|..+...+.++.......+      +...+......+...||+  |++.+.-|...-.    ..+.++
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~------l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~  577 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQHDVYH------LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE  577 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHcccHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence            8888889999999999999988877666422      112222233455568994  4444544544333    223334


Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      -.....+.++...-++++++.-..+.+++....         .   .++. ..-..+++|+.++.-+|++++|-....+.
T Consensus       578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~---------~---~~~~-~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~  644 (894)
T COG2909         578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY---------T---PQPL-LSRLALSMLAELEFLRGDLDKALAQLDEL  644 (894)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc---------c---cchh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            455667778888777999999888888873111         1   0111 11123469999999999999998887776


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHH-HHHHHhhchhhh
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLA-LMFRNKAMQEHS  341 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa-~ly~~qG~~eeA  341 (441)
                      ......-  ..|++.-...+-.. .+...||+++++
T Consensus       645 ~~l~~~~--~~~~~~~a~~~~v~~~lwl~qg~~~~a  678 (894)
T COG2909         645 ERLLLNG--QYHVDYLAAAYKVKLILWLAQGDKELA  678 (894)
T ss_pred             HHHhcCC--CCCchHHHHHHHhhHHHhcccCCHHHH
Confidence            5554332  14666444444333 344567888776

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00024  Score=72.67  Aligned_cols=107  Identities=19%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      |+.|...|+|..|...|+||+..+.....+..+.     ..-.....+.+++||+.+|..+++|.+|++...++|.+   
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee-----~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---  286 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE-----QKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---  286 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHH-----HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence            6678899999999999999999864333211100     00012234556789999999999999999999999874   


Q ss_pred             hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                        +++   -...|..-|..|..+|.|+.|      ...|++|+++.
T Consensus       287 --~~~---N~KALyRrG~A~l~~~e~~~A------~~df~ka~k~~  321 (397)
T KOG0543|consen  287 --DPN---NVKALYRRGQALLALGEYDLA------RDDFQKALKLE  321 (397)
T ss_pred             --CCC---chhHHHHHHHHHHhhccHHHH------HHHHHHHHHhC
Confidence              333   446788999999999999987      89999998874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.52  E-value=0.00013  Score=55.72  Aligned_cols=53  Identities=11%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      +.+|+|++|+.+|++++...+....+...++.+|..+|++++|+.++++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            47899999999999999988878888899999999999999999999998865

...

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.49  E-value=0.00021  Score=48.49  Aligned_cols=31  Identities=19%  Similarity=0.368  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549          110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus       110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      ++++||.+|.++|+|++|+++|++++.+..+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            5899999999999999999999999877654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.49  E-value=0.066  Score=58.17  Aligned_cols=277  Identities=18%  Similarity=0.172  Sum_probs=145.2

Q ss_pred             CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Q 013549          101 QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK  180 (441)
Q Consensus       101 g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~  180 (441)
                      |-+..+.=.+.++-+..+..++.++-|...|..+|.+.+..-    ..|-..+.+-..-|.-++-+.++++++.-.-+..
T Consensus       509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~----slWlra~~~ek~hgt~Esl~Allqkav~~~pkae  584 (913)
T KOG0495|consen  509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK----SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE  584 (913)
T ss_pred             ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch
Confidence            355566777888888888889999999999988887765421    2333444444444555555555555542211110


Q ss_pred             C-------CcchhhhhhHhHHHHHHHH-----------------HHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549          181 P-------ENYKTYGAVNSRANAVKGL-----------------VELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL  236 (441)
Q Consensus       181 ~-------~~~~~~~~l~~~a~al~gl-----------------~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~  236 (441)
                      .       +.|. +.++ .-+..+++.                 +....-+||+|..+|.++....+ +..+..-++.+.
T Consensus       585 ~lwlM~ake~w~-agdv-~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~e  661 (913)
T KOG0495|consen  585 ILWLMYAKEKWK-AGDV-PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLE  661 (913)
T ss_pred             hHHHHHHHHHHh-cCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHH
Confidence            0       0000 0000 000111111                 12235567777777777766322 334555566677


Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      +.+|+.+||..+.+++|.++.         .+   +        -...-+|+++..+++.+.|.+-|.+-+.        
T Consensus       662 r~ld~~eeA~rllEe~lk~fp---------~f---~--------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--------  713 (913)
T KOG0495|consen  662 RYLDNVEEALRLLEEALKSFP---------DF---H--------KLWLMLGQIEEQMENIEMAREAYLQGTK--------  713 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHhCC---------ch---H--------HHHHHHhHHHHHHHHHHHHHHHHHhccc--------
Confidence            777888888888877777631         00   0        1235677788888877777777765442        


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHH--HHHhccHHHHHHHhhc
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV--ALARGGYAEALSVQQN  394 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~--~~~~g~yaeal~~~~~  394 (441)
                      .-|..-...--|+.+-..+|..-.|      ...+.|+       -...|..  .+-+++.+  .+..|.-++|.....+
T Consensus       714 ~cP~~ipLWllLakleEk~~~~~rA------R~ildra-------rlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmak  778 (913)
T KOG0495|consen  714 KCPNSIPLWLLLAKLEEKDGQLVRA------RSILDRA-------RLKNPKN--ALLWLESIRMELRAGNKEQAELLMAK  778 (913)
T ss_pred             cCCCCchHHHHHHHHHHHhcchhhH------HHHHHHH-------HhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHH
Confidence            2255444445555666666543333      3333333       1222221  11122222  2233444444333222


Q ss_pred             hhhHH-HHHHHHHHHHH----hccChhHHHHhcccCCC
Q 013549          395 RKDEG-ERMKRWAEAAW----RNRRVSLAEALNFSEPS  427 (441)
Q Consensus       395 r~~ea-e~~~~~a~~~~----~~~r~~~~~~l~~~~~~  427 (441)
                      ...|- ..=.-|++++|    .+++..--+||.+.++.
T Consensus       779 ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~d  816 (913)
T KOG0495|consen  779 ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHD  816 (913)
T ss_pred             HHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCC
Confidence            11110 00113899998    46666777899888877

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.074  Score=56.00  Aligned_cols=240  Identities=14%  Similarity=0.123  Sum_probs=152.1

Q ss_pred             cCChHHHHHHHHHHHHhhhhhhh----------hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhh
Q 013549          121 SGNYVEAIEKLQKVENFKNSILG----------VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAV  190 (441)
Q Consensus       121 qG~y~eA~e~~~ral~i~~~~lg----------~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l  190 (441)
                      .|=|++|.++-.+++...+..-.          ..+..+++++.+-.-.|++.+|+.-.....+...+...  +.--...
T Consensus       288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~--~~Llr~~  365 (629)
T KOG2300|consen  288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT--PLLLRAH  365 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc--hHHHHHh
Confidence            35577777766666544332211          12457788888888899999987655555544433321  0000111


Q ss_pred             HhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHHH--HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549          191 NSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSAA--LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT  267 (441)
Q Consensus       191 ~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~a--~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~  267 (441)
                      ....-.+.|++-..-|.|+.||..|..|.+ ++.....+.  .|+|-+|-.+|+-   +.+| ++++..    +..+.++
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~---ed~y-~~ld~i----~p~nt~s  437 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA---EDLY-KALDLI----GPLNTNS  437 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH---HHHH-HHHHhc----CCCCCCc
Confidence            111223678888899999999999999998 443332332  4567788887764   4444 455541    1011111


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 013549          268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ  347 (441)
Q Consensus       268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~A  347 (441)
                      +.     ..-.....+.--|...+.|++|.||..++.+.|++... - +..--|+-+|.-|+.++..-|+..|+      
T Consensus       438 ~s-----sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana-e-d~~rL~a~~LvLLs~v~lslgn~~es------  504 (629)
T KOG2300|consen  438 LS-----SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA-E-DLNRLTACSLVLLSHVFLSLGNTVES------  504 (629)
T ss_pred             ch-----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch-h-hHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence            11     11122334567788899999999999999999999721 1 12234778899999999999998876      


Q ss_pred             HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhcc
Q 013549          348 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG  384 (441)
Q Consensus       348 e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~  384 (441)
                      +...+-++..-++ .+|+|-...+..-+-.++.+-|.
T Consensus       505 ~nmvrpamqlAkK-i~Di~vqLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  505 RNMVRPAMQLAKK-IPDIPVQLWSSSILTDLYQALGE  540 (629)
T ss_pred             HhccchHHHHHhc-CCCchHHHHHHHHHHHHHHHhCc
Confidence            8889999998875 56777655444444455566554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.047  Score=53.03  Aligned_cols=33  Identities=6%  Similarity=0.033  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFG  315 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG  315 (441)
                      +...+.+|....+|+||-..+.+-..+..++--
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            345566666666666666666666666655533

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.012  Score=58.41  Aligned_cols=193  Identities=16%  Similarity=0.224  Sum_probs=111.2

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      -+|..|++++.--.+        ..|.+-..++-||..|+..-+|.+|-++|++.-.+.+..-.-+   +.. +.-.++.
T Consensus        24 ~ry~DaI~~l~s~~E--------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr---lY~-AQSLY~A   91 (459)
T KOG4340|consen   24 ARYADAIQLLGSELE--------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR---LYQ-AQSLYKA   91 (459)
T ss_pred             hhHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH---HHH-HHHHHHh
Confidence            378899998776553        4565667789999999999999999999999654444321111   000 1111233


Q ss_pred             CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549          160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT  239 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q  239 (441)
                      +.+..|+.+....+       +     .+.+-.+..-+-.-+....|++.-+..+.++-...  ....+.++.|.+...-
T Consensus        92 ~i~ADALrV~~~~~-------D-----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllyke  157 (459)
T KOG4340|consen   92 CIYADALRVAFLLL-------D-----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKE  157 (459)
T ss_pred             cccHHHHHHHHHhc-------C-----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheeecc
Confidence            44444433322111       0     01111111111122223556666665555544321  1223456677777888


Q ss_pred             cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549          240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP  319 (441)
Q Consensus       240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP  319 (441)
                      |+|++|.+-|+.|++.    .|+  .+              ..-.|++..+...|+|+.|..+..+.++---    .+||
T Consensus       158 gqyEaAvqkFqaAlqv----sGy--qp--------------llAYniALaHy~~~qyasALk~iSEIieRG~----r~HP  213 (459)
T KOG4340|consen  158 GQYEAAVQKFQAALQV----SGY--QP--------------LLAYNLALAHYSSRQYASALKHISEIIERGI----RQHP  213 (459)
T ss_pred             ccHHHHHHHHHHHHhh----cCC--Cc--------------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh----hcCC
Confidence            8899998888888887    220  01              1136888888888888888888776554333    3666


Q ss_pred             hHH
Q 013549          320 KVG  322 (441)
Q Consensus       320 ~va  322 (441)
                      ..+
T Consensus       214 Elg  216 (459)
T KOG4340|consen  214 ELG  216 (459)
T ss_pred             ccC
Confidence            543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.41  E-value=0.0054  Score=66.15  Aligned_cols=138  Identities=12%  Similarity=0.031  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchh-HHHHHHHHHHHHhcCCCcch
Q 013549          110 SLLAMSTLLYESG---NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTS-SVVADKCLQLCEKHKPENYK  185 (441)
Q Consensus       110 ~l~nLa~l~~~qG---~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A-~~l~~~~L~i~~~~~~~~~~  185 (441)
                      .+.--|.-|..++   .+.+|+.+|++|+++.+.- +   .++-.++..|.....+... ..-..++.+...+..... .
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~-a---~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~-~  415 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF-T---YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP-E  415 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc-H---HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc-c
Confidence            3334444444444   4889999999999888753 1   1222223333322222210 111123333333211100 0


Q ss_pred             hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          186 TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       186 ~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                        .....+.....++....+|++++|+..|++++...+. ..+...+|.++..+|++++|.+.|++|+.+
T Consensus       416 --~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        416 --LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             --CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence              0111233334577777899999999999999996553 445566799999999999999999999987

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.40  E-value=0.00051  Score=53.12  Aligned_cols=59  Identities=24%  Similarity=0.194  Sum_probs=52.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          286 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       286 Lg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      |..+|..+++|++|.+.+++++.+        +|+-...+...|.+|..+|++++|      ...+++++++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A------~~~l~~~l~~~   59 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEA------LEDLERALELS   59 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHH------HHHHHHHHHHC
Confidence            467899999999999999999998        677778888999999999999987      88899998663

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0066  Score=58.99  Aligned_cols=164  Identities=16%  Similarity=0.112  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      ...++-+|.+.      -|+.+-|..++.+-..-+     |..+.   +.--=|..+...|.|++|++.|..-+.-.+-.
T Consensus        54 l~EqV~IAAld------~~~~~lAq~C~~~L~~~f-----p~S~R---V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~  119 (289)
T KOG3060|consen   54 LYEQVFIAALD------TGRDDLAQKCINQLRDRF-----PGSKR---VGKLKAMLLEATGNYKEAIEYYESLLEDDPTD  119 (289)
T ss_pred             HHHHHHHHHHH------hcchHHHHHHHHHHHHhC-----CCChh---HHHHHHHHHHHhhchhhHHHHHHHHhccCcch
Confidence            34555566664      245667777777655433     22323   33334678899999999999999876544432


Q ss_pred             hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 013549          142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE  221 (441)
Q Consensus       142 lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~  221 (441)
                      ..+    ...-..+...+|+-.+|..-....++.+..+..       ..     .-+.-+|+..|+|++|.-+|++.+-.
T Consensus       120 ~v~----~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E-------AW-----~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  120 TVI----RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE-------AW-----HELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             hHH----HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH-------HH-----HHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            222    222233445679888888777777776644432       21     11345678999999999999999987


Q ss_pred             cCCchHHHHHHHHHHHHcc---ChHHHHHHHHHHHHH
Q 013549          222 EGCTGSAALSYGEYLHATR---NFLLAKKFYQKVIEV  255 (441)
Q Consensus       222 ~~~~~~~a~~~a~~~~~qG---~y~eA~~ly~rAL~i  255 (441)
                      .|..+.-...||++++.+|   ++.-|..+|.|||++
T Consensus       184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            7767777788999998887   667899999999999

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.04  Score=54.05  Aligned_cols=133  Identities=18%  Similarity=0.124  Sum_probs=83.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhc-cCCch-HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          199 GLVELAHGNLESAESFFKGLQEE-EGCTG-SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~-~~~~~-~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      --+.+..-++|-|+...++.... +..+. ..+..+-.+....+++.+|.-+|+.--      .+      ..     | 
T Consensus       144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s------~k------~~-----~-  205 (299)
T KOG3081|consen  144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS------EK------TP-----P-  205 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh------cc------cC-----C-
Confidence            33445677788888877777773 22221 133333333334456666666665411      11      11     1 


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                        +...++..+.+...||+|+||+.+++.||.-.        |....+|.|+=..-..+|+-.++         -.|-+.
T Consensus       206 --T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~~~Gkd~~~---------~~r~l~  266 (299)
T KOG3081|consen  206 --TPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLALHLGKDAEV---------TERNLS  266 (299)
T ss_pred             --ChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCChHH---------HHHHHH
Confidence              23457899999999999999999999999743        44466677777888889998765         234444


Q ss_pred             HhhcCCCCCcch
Q 013549          357 FLKAPPLESEGV  368 (441)
Q Consensus       357 i~~~~~~~~~~~  368 (441)
                      -++...|.||-+
T Consensus       267 QLk~~~p~h~~v  278 (299)
T KOG3081|consen  267 QLKLSHPEHPFV  278 (299)
T ss_pred             HHHhcCCcchHH
Confidence            455556777753

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.30  E-value=0.00083  Score=51.92  Aligned_cols=56  Identities=14%  Similarity=0.089  Sum_probs=51.1

Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          200 LVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       200 l~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      .+|..+++|++|...+++++..++........+|.++..+|+|++|...+++++++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35679999999999999999977777777888999999999999999999999987

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.28  E-value=0.044  Score=56.22  Aligned_cols=195  Identities=13%  Similarity=0.110  Sum_probs=117.2

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-hHHHHHHH--HH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEAL--AG  154 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-~~~al~~L--a~  154 (441)
                      .+|+|.-|..-..+.++..     +.||.+   +.-.-.+|.++|+|.+...+..+.-+-.-  ++. ...-+++.  -+
T Consensus       165 ~~~d~~aA~~~v~~ll~~~-----pr~~~v---lrLa~r~y~~~g~~~~ll~~l~~L~ka~~--l~~~e~~~le~~a~~g  234 (400)
T COG3071         165 NRRDYPAARENVDQLLEMT-----PRHPEV---LRLALRAYIRLGAWQALLAILPKLRKAGL--LSDEEAARLEQQAWEG  234 (400)
T ss_pred             hCCCchhHHHHHHHHHHhC-----cCChHH---HHHHHHHHHHhccHHHHHHHHHHHHHccC--CChHHHHHHHHHHHHH
Confidence            4688999999999999744     677765   44566789999999999877655321110  110 11112221  12


Q ss_pred             HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh--------------
Q 013549          155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE--------------  220 (441)
Q Consensus       155 l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~--------------  220 (441)
                      +..+..+..-++.+ ..++   +... .+-.....+    ..-...-+...|++++|..+.+++|+              
T Consensus       235 lL~q~~~~~~~~gL-~~~W---~~~p-r~lr~~p~l----~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l  305 (400)
T COG3071         235 LLQQARDDNGSEGL-KTWW---KNQP-RKLRNDPEL----VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL  305 (400)
T ss_pred             HHHHHhccccchHH-HHHH---Hhcc-HHhhcChhH----HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhc
Confidence            22222222222221 1111   1111 000000011    00011223467777777777777766              


Q ss_pred             -----------------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549          221 -----------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT  283 (441)
Q Consensus       221 -----------------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al  283 (441)
                                       .++..+.....+|.++...+.|.+|...++.||...    .                 .....
T Consensus       306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~----~-----------------s~~~~  364 (400)
T COG3071         306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR----P-----------------SASDY  364 (400)
T ss_pred             CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC----C-----------------ChhhH
Confidence                             233445566778999999999999999999988761    1                 11246


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      +-||.++..+|+..+|++.++.+|..+..
T Consensus       365 ~~la~~~~~~g~~~~A~~~r~e~L~~~~~  393 (400)
T COG3071         365 AELADALDQLGEPEEAEQVRREALLLTRQ  393 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence            78999999999999999999999966654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.27  E-value=0.072  Score=57.92  Aligned_cols=64  Identities=23%  Similarity=0.355  Sum_probs=45.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHH--------HHhhCCCCchHH--------------HHHHHHHHHHHHhhchhhhhhhHH
Q 013549          289 LEAHMGNFGDAEEILTRTLTKT--------EELFGSHHPKVG--------------VVLTCLALMFRNKAMQEHSSALLI  346 (441)
Q Consensus       289 ly~~qG~y~eAe~l~~rAL~i~--------e~~lG~~HP~va--------------~~l~nLa~ly~~qG~~eeA~~~~~  346 (441)
                      +-...|.-++|+.+..|||+-+        |.++=..||.--              -+|.-+|.+++...++++|     
T Consensus       762 ~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~ka-----  836 (913)
T KOG0495|consen  762 MELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKA-----  836 (913)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH-----
Confidence            4556799999999999999743        344333333211              1455677999999999887     


Q ss_pred             HHHHHHHHHHHh
Q 013549          347 QEGLYRRALEFL  358 (441)
Q Consensus       347 Ae~ly~rAL~i~  358 (441)
                       ...|.||+++-
T Consensus       837 -r~Wf~Ravk~d  847 (913)
T KOG0495|consen  837 -REWFERAVKKD  847 (913)
T ss_pred             -HHHHHHHHccC
Confidence             78899998774

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.25  E-value=0.029  Score=60.62  Aligned_cols=144  Identities=17%  Similarity=0.150  Sum_probs=108.0

Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                      ..++|...+..++..|.    ..++|.   +++     ++.|+.....|+-++|-.+-+..+......+-...-+|-+++
T Consensus        19 E~kQYkkgLK~~~~iL~----k~~eHg---esl-----AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILK----KFPEHG---ESL-----AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHhHHHHHHHHHH----hCCccc---hhH-----HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34677777777776654    233332   223     467888889999999999999999854433345567888999


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      ...+|+||+.+|+.||.|   .+.                 ....+-+|+.+...+|+|+-...--.+-|+.        
T Consensus        87 ~dK~Y~eaiKcy~nAl~~---~~d-----------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------  138 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKI---EKD-----------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------  138 (700)
T ss_pred             hhhhHHHHHHHHHHHHhc---CCC-----------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------
Confidence            999999999999999999   222                 2346789999999999998776666665554        


Q ss_pred             CchHHHHHHHHHHHHHHhhchhhh
Q 013549          318 HPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      -|.........|..+.-.|.|..|
T Consensus       139 ~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen  139 RPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            477788888899999888877666

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.23  E-value=0.00043  Score=52.74  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      +|+|++|+.+|++++..        +|.-..+...||.+|..+|+|++|+..+++++...+.
T Consensus         4 ~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             TTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             ccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            58999999999999974        4556677889999999999999999999998766654

...

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.19  E-value=0.14  Score=55.60  Aligned_cols=169  Identities=15%  Similarity=0.195  Sum_probs=112.3

Q ss_pred             HHHHcCCHHHHHHHHHhhhhc------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          201 VELAHGNLESAESFFKGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       201 ~~~~qG~y~eAe~l~~~aL~~------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                      +-+..|++.+-..-|.+|+..      ....+.....+|.+|..-|+.+.|..++++|+..   .-+       +     
T Consensus       356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V---~y~-------~-----  420 (835)
T KOG2047|consen  356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV---PYK-------T-----  420 (835)
T ss_pred             hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC---Ccc-------c-----
Confidence            345689999999999999871      2233456688999999999999999999999987   111       1     


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh-HHHHH
Q 013549          275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE----ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL-LIQEG  349 (441)
Q Consensus       275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e----~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~-~~Ae~  349 (441)
                      .++ .....++-|..-....+|+.|..+.++|...=.    ..+...||--+..... -.+...--+++|+.+. .--..
T Consensus       421 v~d-La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS-lkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  421 VED-LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS-LKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             hHH-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh-HHHHHHHHHHHHHhccHHHHHH
Confidence            111 123467888888889999999999999987533    3456666654443333 3444444556665221 11356


Q ss_pred             HHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549          350 LYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       350 ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      .|.|.++++-+.    |.   ++-|-|.....+.-+.++...++
T Consensus       499 vYdriidLriaT----Pq---ii~NyAmfLEeh~yfeesFk~YE  535 (835)
T KOG2047|consen  499 VYDRIIDLRIAT----PQ---IIINYAMFLEEHKYFEESFKAYE  535 (835)
T ss_pred             HHHHHHHHhcCC----HH---HHHHHHHHHHhhHHHHHHHHHHH
Confidence            788888776542    33   44466666666666666666653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.15  E-value=0.024  Score=63.82  Aligned_cols=202  Identities=9%  Similarity=-0.009  Sum_probs=142.1

Q ss_pred             hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549           81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG  160 (441)
Q Consensus        81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G  160 (441)
                      +.-+|-.+|.+|.++.        +.-+.+--.++.+|-+.-.|++|.+...++-...+..  .....|-.++-+|..-|
T Consensus       507 Dm~RA~kCf~KAFeLD--------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~--~~k~nW~~rG~yyLea~  576 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELD--------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF--ACKENWVQRGPYYLEAH  576 (1238)
T ss_pred             HHHHHHHHHHHHhcCC--------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH--HHHhhhhhccccccCcc
Confidence            5679999999999754        3456666778999999999999999866554333321  11123333566677888


Q ss_pred             CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc
Q 013549          161 QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATR  240 (441)
Q Consensus       161 ~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG  240 (441)
                      +...+...++.++.+.-+..            +...-+|-+|...|+|.-|.+.|.++..-.|.+--.-+-.+.+.+..|
T Consensus       577 n~h~aV~~fQsALR~dPkD~------------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  577 NLHGAVCEFQSALRTDPKDY------------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG  644 (1238)
T ss_pred             chhhHHHHHHHHhcCCchhH------------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence            88888888888874432221            122235888999999999999999998855544334445577889999


Q ss_pred             ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          241 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       241 ~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      +|.+|..-++..+..+....-  .-..           .+-++.-++-.+..+|=+.+|..+++++++++.-++-+.
T Consensus       645 kYkeald~l~~ii~~~s~e~~--~q~g-----------LaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~  708 (1238)
T KOG1127|consen  645 KYKEALDALGLIIYAFSLERT--GQNG-----------LAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS  708 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH--hhhh-----------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence            999999999998877532221  0001           112445666777888999999999999999888776544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.11  E-value=0.0093  Score=62.10  Aligned_cols=48  Identities=15%  Similarity=-0.002  Sum_probs=22.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchh
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE  339 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~e  339 (441)
                      +-.+..+..+|+|+.|.++.++|..+.        |+--.+...||.+|..+|+++
T Consensus       238 ~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  238 NLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHH
Confidence            344444444455544444444444432        444444444445554444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.98  E-value=0.028  Score=49.71  Aligned_cols=97  Identities=21%  Similarity=0.090  Sum_probs=79.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      +.|++...-|+.+.|.+.|.++|..-+..+.+.+|-+..++-||+.++|.+-..+||++.   .+    ..-.       
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~----~trt-------  113 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA---GD----QTRT-------  113 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Cc----cchH-------
Confidence            456666789999999999999999766667777888999999999999999999999982   11    1111       


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                        .-.+++--|.+|+.+|+-|.|..-|+.|-.+
T Consensus       114 --acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  114 --ACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             --HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence              1135678899999999999999999998654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.98  E-value=0.0089  Score=56.38  Aligned_cols=97  Identities=18%  Similarity=0.128  Sum_probs=80.3

Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      |+-+...|.|++|..-|++||++.   -     +.       +.++....+.|-|.....+++++.|+.-..+|+++.  
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~c---p-----~~-------~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--  164 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESC---P-----ST-------STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--  164 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhC---c-----cc-------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--
Confidence            455678899999999999999993   1     11       334455567799999999999999999999999874  


Q ss_pred             hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                            |..-..|..-|.+|..+.+|++|      ..-|++.+++.
T Consensus       165 ------pty~kAl~RRAeayek~ek~eea------leDyKki~E~d  198 (271)
T KOG4234|consen  165 ------PTYEKALERRAEAYEKMEKYEEA------LEDYKKILESD  198 (271)
T ss_pred             ------chhHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHhC
Confidence                  77888888999999999999987      78898887763

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.95  E-value=0.019  Score=59.79  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=84.7

Q ss_pred             HHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHH
Q 013549          151 ALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAAL  230 (441)
Q Consensus       151 ~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~  230 (441)
                      .|..++...+++++|..++++..    ...++           ...+...+++..++-.+|..+..+++...+.......
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~----~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~  238 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLR----ERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN  238 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHH----hcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            34455555677766666665542    11111           1223455666788999999999999986665656666


Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL  303 (441)
Q Consensus       231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~  303 (441)
                      -.+.++..+|+|+.|.++.++|.++.                  |.  ...+...|+.+|..+|+|++|.-.+
T Consensus       239 ~Qa~fLl~k~~~~lAL~iAk~av~ls------------------P~--~f~~W~~La~~Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  239 LQAEFLLSKKKYELALEIAKKAVELS------------------PS--EFETWYQLAECYIQLGDFENALLAL  291 (395)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhC------------------ch--hHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            67999999999999999999999882                  22  1346778999999999999996443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.11  Score=50.45  Aligned_cols=124  Identities=13%  Similarity=0.042  Sum_probs=85.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhc---cCCchHHHHH---HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549          199 GLVELAHGNLESAESFFKGLQEE---EGCTGSAALS---YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN  272 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~---~~~~~~~a~~---~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~  272 (441)
                      ...|....+|++|...+.++.+.   ....-.++-.   -+.+.....++.|+..+|+||..++.+...           
T Consensus        38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs-----------  106 (308)
T KOG1585|consen   38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS-----------  106 (308)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-----------
Confidence            34456788999999999999972   1222233333   356778899999999999999999754321           


Q ss_pred             cchhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH-HHHHHHHHHHHHhhchhhh
Q 013549          273 MALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       273 ~~~~~~~~~-al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va-~~l~nLa~ly~~qG~~eeA  341 (441)
                        |+  +.+ ++---|. ...--+.++|..+|+|++++.+.-   +.-..+ ..+.-.+.+|-+-.+|+||
T Consensus       107 --pd--tAAmaleKAak-~lenv~Pd~AlqlYqralavve~~---dr~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  107 --PD--TAAMALEKAAK-ALENVKPDDALQLYQRALAVVEED---DRDQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             --cc--hHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHhhhHhhhhHHhhHH
Confidence              22  111 2223333 344578999999999999999862   222233 5677788999999999887

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.95  E-value=0.0017  Score=42.86  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      |.++.++|.+|..+|+|++|++.|++++++.+.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            568999999999999999999999999988764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.043  Score=53.85  Aligned_cols=170  Identities=20%  Similarity=0.202  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG  188 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~  188 (441)
                      ..+.-=|.+|..-|+|++|+....+..       +..+.++++  .++..+++.+.|+....+..+|.         +..
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~id---------ed~  170 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNV--QILLKMHRFDLAEKELKKMQQID---------EDA  170 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccc---------hHH
Confidence            444555678999999999998887732       222334433  33445566666665555554332         222


Q ss_pred             hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549          189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL  268 (441)
Q Consensus       189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~l  268 (441)
                      .+...+.+...++- ..+++.+|--+|+.--..-+.++.+.+..|.+...+|||+||+.+.+.||.-     .   +.+ 
T Consensus       171 tLtQLA~awv~la~-ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-----d---~~d-  240 (299)
T KOG3081|consen  171 TLTQLAQAWVKLAT-GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-----D---AKD-  240 (299)
T ss_pred             HHHHHHHHHHHHhc-cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-----c---CCC-
Confidence            34334444333321 3456899999999877745557677777888888999999999999999975     1   111 


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH
Q 013549          269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV  321 (441)
Q Consensus       269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v  321 (441)
                            |     .++.|+=.+-..+|+-+++.+-+.--|    +.+-|+||-|
T Consensus       241 ------p-----etL~Nliv~a~~~Gkd~~~~~r~l~QL----k~~~p~h~~v  278 (299)
T KOG3081|consen  241 ------P-----ETLANLIVLALHLGKDAEVTERNLSQL----KLSHPEHPFV  278 (299)
T ss_pred             ------H-----HHHHHHHHHHHHhCCChHHHHHHHHHH----HhcCCcchHH
Confidence                  2     256788778888999988876555433    4466777755

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.1  Score=53.11  Aligned_cols=60  Identities=17%  Similarity=0.127  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 013549           61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ  132 (441)
Q Consensus        61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~  132 (441)
                      +.-.-..+|..++-    .--|+||+.+|.+.|.        +.|..-..--+||..|+...=|+-+.+.+.
T Consensus       150 ~~EdqLSLAsvhYm----R~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~  209 (557)
T KOG3785|consen  150 TLEDQLSLASVHYM----RMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLK  209 (557)
T ss_pred             hHHHHHhHHHHHHH----HHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence            33344445555521    2358999999999995        566777777788888888888776665543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.86  E-value=0.21  Score=55.02  Aligned_cols=69  Identities=22%  Similarity=0.271  Sum_probs=47.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH-------------------HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549          284 FALGQLEAHMGNFGDAEEILTR-------------------TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL  344 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~r-------------------AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~  344 (441)
                      ..++.-|...|+|+.||++|.+                   |..+.++.-|++.  |.+.+..-|.=...+|+|.+|   
T Consensus       769 ~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~--t~~~yiakaedldehgkf~ea---  843 (1636)
T KOG3616|consen  769 GEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEA--TISLYIAKAEDLDEHGKFAEA---  843 (1636)
T ss_pred             hHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchh--HHHHHHHhHHhHHhhcchhhh---
Confidence            3567778888888888887754                   4556667777654  555666677788899998887   


Q ss_pred             HHHHHHH------HHHHHHhhc
Q 013549          345 LIQEGLY------RRALEFLKA  360 (441)
Q Consensus       345 ~~Ae~ly------~rAL~i~~~  360 (441)
                         |.||      .+|+.+++.
T Consensus       844 ---eqlyiti~~p~~aiqmydk  862 (1636)
T KOG3616|consen  844 ---EQLYITIGEPDKAIQMYDK  862 (1636)
T ss_pred             ---hheeEEccCchHHHHHHHh
Confidence               6666      355555543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.84  E-value=0.0081  Score=58.86  Aligned_cols=95  Identities=21%  Similarity=0.242  Sum_probs=76.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhc---cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549          199 GLVELAHGNLESAESFFKGLQEE---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL  275 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~  275 (441)
                      ++-++..|+|++|+.-|..-++.   ..-.+++.+-||+++..||+|++|...|.++..-+   .   .++ -+     |
T Consensus       148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~---P---~s~-KA-----p  215 (262)
T COG1729         148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY---P---KSP-KA-----P  215 (262)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC---C---CCC-CC-----h
Confidence            44456899999999999999993   33457788889999999999999999999988752   1   111 11     3


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                           .+|.-||.....+|+-++|...|++.++-|
T Consensus       216 -----dallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         216 -----DALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence                 368999999999999999999999887644

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.82  E-value=0.0045  Score=62.43  Aligned_cols=107  Identities=14%  Similarity=0.055  Sum_probs=82.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHH
Q 013549          199 GLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV  278 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~  278 (441)
                      |.-|+.||+|+||+.+|.++++..+..+....|-|..|..+.+|..|+.-..-|+++   .+.                 
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~-----------------  163 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKL-----------------  163 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHH-----------------
Confidence            666889999999999999999966655556677888999999999999999999988   222                 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 013549          279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL  330 (441)
Q Consensus       279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~  330 (441)
                      .+-++..-|..-..+|+..||.+-++++|.+     -|+.-.+-..+..++.
T Consensus       164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L-----EP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL-----EPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh-----CcccHHHHHHHHHhcc
Confidence            3456777788888888899999999888864     3444444445554444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.79  E-value=0.02  Score=50.62  Aligned_cols=92  Identities=14%  Similarity=0.149  Sum_probs=74.6

Q ss_pred             HHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013549          235 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF  314 (441)
Q Consensus       235 ~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~l  314 (441)
                      .+..-|+.+.|++.|.+||.+.                  |+  ...++||-++.|+-||+-++|..-+.+||++.    
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~------------------P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----  107 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA------------------PE--RASAYNNRAQALRLQGDDEEALDDLNKALELA----  107 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc------------------cc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhc----
Confidence            3456799999999999999983                  11  23578999999999999999999999999764    


Q ss_pred             CCCCchHH-HHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          315 GSHHPKVG-VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       315 G~~HP~va-~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      |+. ..++ -++..-|.+|+.+|+.+.|      ..-|++|-.+
T Consensus       108 g~~-trtacqa~vQRg~lyRl~g~dd~A------R~DFe~AA~L  144 (175)
T KOG4555|consen  108 GDQ-TRTACQAFVQRGLLYRLLGNDDAA------RADFEAAAQL  144 (175)
T ss_pred             Ccc-chHHHHHHHHHHHHHHHhCchHHH------HHhHHHHHHh
Confidence            555 3444 5788899999999999887      6778777665

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.74  E-value=0.0034  Score=41.34  Aligned_cols=29  Identities=28%  Similarity=0.458  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      ++.++|.+|..+|+|++|++.|++||++.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            57899999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.71  E-value=0.0033  Score=41.07  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      |..+..+|.+|..+|+|++|++.|++++.+.+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            467899999999999999999999999887653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.079  Score=51.20  Aligned_cols=53  Identities=17%  Similarity=0.117  Sum_probs=39.7

Q ss_pred             HcCCHHHHHHHHHhhhhccCCc---hHH---HHHHHHHHHHc-cChHHHHHHHHHHHHHH
Q 013549          204 AHGNLESAESFFKGLQEEEGCT---GSA---ALSYGEYLHAT-RNFLLAKKFYQKVIEVL  256 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~~---~~~---a~~~a~~~~~q-G~y~eA~~ly~rAL~i~  256 (441)
                      ..++.++|..+++++++.....   ..+   ...+|++|..- -++++|+..|++|-+-+
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y  144 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY  144 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            5778888888998888821111   122   24678888765 89999999999999985

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.015  Score=57.74  Aligned_cols=112  Identities=16%  Similarity=0.183  Sum_probs=87.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATR---NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG---~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                      ++|-+|..+|+++.|..-|.+++...+..+.....||+++..+.   .-.+|..++++||..        ++.       
T Consensus       161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--------D~~-------  225 (287)
T COG4235         161 LLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--------DPA-------  225 (287)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--------CCc-------
Confidence            57889999999999999999999977777888889998766553   345899999999976        111       


Q ss_pred             chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549          274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly  332 (441)
                           .+.++.-||.-+..+|+|.+|...++.-|+    .+-++-|.+..+=-.++...
T Consensus       226 -----~iral~lLA~~afe~g~~~~A~~~Wq~lL~----~lp~~~~rr~~ie~~ia~~~  275 (287)
T COG4235         226 -----NIRALSLLAFAAFEQGDYAEAAAAWQMLLD----LLPADDPRRSLIERSIARAL  275 (287)
T ss_pred             -----cHHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHHHH
Confidence                 246788999999999999999988877664    56677777665555444443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.62  E-value=0.17  Score=59.05  Aligned_cols=207  Identities=14%  Similarity=0.179  Sum_probs=138.0

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh---hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK---NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK  180 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~---~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~  180 (441)
                      ||.-+....+-=..+.+.++.++|.+..+|||.--   ++  ......|-++.++....|..+.-..+++++-+...   
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe--eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE--EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh--HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc---
Confidence            45545544444446778899999999999997422   22  11223444555554455765555666666532221   


Q ss_pred             CCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549          181 PENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK  260 (441)
Q Consensus       181 ~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~  260 (441)
                              .+... ..|.+ +|..-+++++|.++|++.++...+...+...|+..+..|.+-++|..+.+|||.-..+  
T Consensus      1529 --------~~~V~-~~L~~-iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-- 1596 (1710)
T KOG1070|consen 1529 --------AYTVH-LKLLG-IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-- 1596 (1710)
T ss_pred             --------hHHHH-HHHHH-HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch--
Confidence                    11111 11333 4567899999999999999965577778899999999999999999999999987321  


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh
Q 013549          261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH  340 (441)
Q Consensus       261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee  340 (441)
                                    .+  ++..+.--|++-+.-|+-+++..+|+--|.        .||.--...+-....-..+|..+.
T Consensus      1597 --------------~e--Hv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1597 --------------QE--HVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred             --------------hh--hHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHH
Confidence                          11  244567889999999999999988887765        445543333333344445554444


Q ss_pred             hhhhHHHHHHHHHHHHH
Q 013549          341 SSALLIQEGLYRRALEF  357 (441)
Q Consensus       341 A~~~~~Ae~ly~rAL~i  357 (441)
                            ...+|+|+++.
T Consensus      1653 ------vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1653 ------VRDLFERVIEL 1663 (1710)
T ss_pred             ------HHHHHHHHHhc
Confidence                  48999999876

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.60  E-value=0.21  Score=43.55  Aligned_cols=111  Identities=16%  Similarity=0.163  Sum_probs=77.7

Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      ++-...-|-|++|..-|++|+++-   +.-+....+.     .+....-+...|+..+..+|+|+++..--.+||..+.+
T Consensus        16 ae~ql~~g~~~eAa~s~r~AM~~s---rtiP~eEaFD-----h~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen   16 AERQLQDGAYEEAAASCRKAMEVS---RTIPAEEAFD-----HDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHH---TTS-TTS--------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHh---ccCChHhhcc-----cccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            443445589999999999999993   3312222221     12222223457999999999999999999999999887


Q ss_pred             hhCCCCchHHH----HHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          313 LFGSHHPKVGV----VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       313 ~lG~~HP~va~----~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                       -|+=|.+.+.    +..+-|..+...|+.++|      .+-|+.+-+..
T Consensus        88 -RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA------~~~fr~agEMi  130 (144)
T PF12968_consen   88 -RGELHQDEGKLWIAAVFSRAVALEGLGRKEEA------LKEFRMAGEMI  130 (144)
T ss_dssp             -H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHH
T ss_pred             -ccccccccchhHHHHHHHHHHHHHhcCChHHH------HHHHHHHHHHH
Confidence             4777777553    566788889999999987      88999999987

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK15331 chaperone protein SicA; Provisional

Probab=96.58  E-value=0.031  Score=51.20  Aligned_cols=95  Identities=9%  Similarity=-0.003  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      ....+|--+..+|+|++|+.+|+-..-.     .          +..+     .-..+||.+++.+|+|++|.++|..|.
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d----------~~n~-----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~   98 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIY-----D----------FYNP-----DYTMGLAAVCQLKKQFQKACDLYAVAF   98 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C----------cCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666678999999999999875543     1          1111     235799999999999999999999998


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                      .+..     +.|..   ....|..|..+|+.++|      ...|.-+++
T Consensus        99 ~l~~-----~dp~p---~f~agqC~l~l~~~~~A------~~~f~~a~~  133 (165)
T PRK15331         99 TLLK-----NDYRP---VFFTGQCQLLMRKAAKA------RQCFELVNE  133 (165)
T ss_pred             Hccc-----CCCCc---cchHHHHHHHhCCHHHH------HHHHHHHHh
Confidence            7653     44443   66788999999998887      666666655

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=1  Score=45.18  Aligned_cols=252  Identities=17%  Similarity=0.133  Sum_probs=152.4

Q ss_pred             cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      ++...|.+-+.+.-++.+|++.+    +|.+|-.+|+|--        -.||..+.--.--|..++.-|.|.+|+.....
T Consensus        36 ~~Er~p~~rAgLSlLgyCYY~~Q----~f~~AA~CYeQL~--------ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~  103 (459)
T KOG4340|consen   36 ELERSPRSRAGLSLLGYCYYRLQ----EFALAAECYEQLG--------QLHPELEQYRLYQAQSLYKACIYADALRVAFL  103 (459)
T ss_pred             HHhcCccchHHHHHHHHHHHHHH----HHHHHHHHHHHHH--------hhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            46667777777888888887643    7999999999854        46898888888888888999999999866655


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549          134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES  213 (441)
Q Consensus       134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~  213 (441)
                      ..+- + .+-.+  .+.--+.+.++-++..-+.       .++++..++  .++..++     ..|-+....|+|++|.+
T Consensus       104 ~~D~-~-~L~~~--~lqLqaAIkYse~Dl~g~r-------sLveQlp~e--n~Ad~~i-----n~gCllykegqyEaAvq  165 (459)
T KOG4340|consen  104 LLDN-P-ALHSR--VLQLQAAIKYSEGDLPGSR-------SLVEQLPSE--NEADGQI-----NLGCLLYKEGQYEAAVQ  165 (459)
T ss_pred             hcCC-H-HHHHH--HHHHHHHHhcccccCcchH-------HHHHhccCC--Cccchhc-----cchheeeccccHHHHHH
Confidence            4221 0 00000  0100112222223322221       222222211  1112221     12444458999999999


Q ss_pred             HHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc--cchh--------HH----H
Q 013549          214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN--MALE--------EV----A  279 (441)
Q Consensus       214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~--~~~~--------~~----~  279 (441)
                      -|+.++....-.+-.+.|+|..+...|+|+.|..+--..++-     |..+||.+|.+-  ..++        .+    .
T Consensus       166 kFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR-----G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal  240 (459)
T KOG4340|consen  166 KFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER-----GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL  240 (459)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh-----hhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence            999999955556678999999999999999999988776553     223555555311  1111        00    1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHH-----------------HHHHHHHHH-----------hhCCCCchHHHHHHHHHHH
Q 013549          280 LAATFALGQLEAHMGNFGDAEEIL-----------------TRTLTKTEE-----------LFGSHHPKVGVVLTCLALM  331 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~-----------------~rAL~i~e~-----------~lG~~HP~va~~l~nLa~l  331 (441)
                      +.++|--+.++...|+|+-|.+-+                 ..||.-.+.           .+|- .|---.+..||=.+
T Consensus       241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~-nPfP~ETFANlLll  319 (459)
T KOG4340|consen  241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ-NPFPPETFANLLLL  319 (459)
T ss_pred             HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc-CCCChHHHHHHHHH
Confidence            112333366889999999887644                 344433322           1333 45555677777788


Q ss_pred             HHHhhchhhh
Q 013549          332 FRNKAMQEHS  341 (441)
Q Consensus       332 y~~qG~~eeA  341 (441)
                      |+...-|+-|
T Consensus       320 yCKNeyf~lA  329 (459)
T KOG4340|consen  320 YCKNEYFDLA  329 (459)
T ss_pred             HhhhHHHhHH
Confidence            8775544433

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.49  E-value=0.039  Score=47.95  Aligned_cols=102  Identities=14%  Similarity=0.026  Sum_probs=59.2

Q ss_pred             CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----c--cC----CchHH
Q 013549          160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-----E--EG----CTGSA  228 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~--~~----~~~~~  228 (441)
                      |.|.+|..-+.+++++...-.++..-++.......-+-+.-+....|+|+++..--+++|.     +  +.    ....+
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa  102 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA  102 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence            4444444445555544443332211122222222223334455689999999888888887     1  11    12345


Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      ..+-+..+...|+.+||...|+.|-++..++|+
T Consensus       103 Vfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG  135 (144)
T PF12968_consen  103 VFSRAVALEGLGRKEEALKEFRMAGEMIAERKG  135 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence            577788899999999999999999999888887

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.48  E-value=0.036  Score=54.37  Aligned_cols=101  Identities=17%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      .++.|--+...|+|.+|+.-|+.=+.-+       +...+          +-.+++.||++++.||+|++|...|..+..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-------P~s~~----------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k  206 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-------PNSTY----------TPNAYYWLGESLYAQGDYEDAAYIFARVVK  206 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCcc----------cchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            4444555667899999999999876542       11122          224789999999999999999999999988


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      -+     |+||..-..|.-||.+....|+-++|      -..|++.++-
T Consensus       207 ~~-----P~s~KApdallKlg~~~~~l~~~d~A------~atl~qv~k~  244 (262)
T COG1729         207 DY-----PKSPKAPDALLKLGVSLGRLGNTDEA------CATLQQVIKR  244 (262)
T ss_pred             hC-----CCCCCChHHHHHHHHHHHHhcCHHHH------HHHHHHHHHH
Confidence            43     78999999999999999999999987      5667766443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.27  Score=47.63  Aligned_cols=69  Identities=19%  Similarity=0.180  Sum_probs=52.2

Q ss_pred             HHHHHHHHHH--HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH--HHHHHHHHHHc-CCHHHHHH
Q 013549          227 SAALSYGEYL--HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA--TFALGQLEAHM-GNFGDAEE  301 (441)
Q Consensus       227 ~~a~~~a~~~--~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a--l~nLg~ly~~q-G~y~eAe~  301 (441)
                      .++.+|.+..  .+.++..+|....++|++|++....|                +.++  ...+|.+|..- -++++|+.
T Consensus        72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf----------------~~aAk~~~~iaEiyEsdl~d~ekaI~  135 (288)
T KOG1586|consen   72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRF----------------TMAAKHHIEIAEIYESDLQDFEKAIA  135 (288)
T ss_pred             hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHH----------------HHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence            4667775543  45679999999999999998754432                2222  34789988765 89999999


Q ss_pred             HHHHHHHHHH
Q 013549          302 ILTRTLTKTE  311 (441)
Q Consensus       302 l~~rAL~i~e  311 (441)
                      +|++|-+.|.
T Consensus       136 ~YE~Aae~yk  145 (288)
T KOG1586|consen  136 HYEQAAEYYK  145 (288)
T ss_pred             HHHHHHHHHc
Confidence            9999988875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.39  E-value=0.041  Score=45.40  Aligned_cols=66  Identities=21%  Similarity=0.308  Sum_probs=54.8

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCC-chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLA-ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR  145 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~-h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~  145 (441)
                      .|+|.+|++-+.+.+.......... .-....++.++|.++...|++++|+..+++++++.+.. ++.
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~-~D~   77 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN-GDR   77 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-CCH
Confidence            4789999999999999877665444 22466779999999999999999999999999999874 443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.38  E-value=0.13  Score=50.87  Aligned_cols=111  Identities=18%  Similarity=0.252  Sum_probs=78.6

Q ss_pred             HHcCCHHHHHHHHHhhhhcc-CCc-------hHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHh-hcccCCCCCccccc
Q 013549          203 LAHGNLESAESFFKGLQEEE-GCT-------GSAALSYGEYLHATR-NFLLAKKFYQKVIEVLAE-QKDFSDMNTLGSCN  272 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~-~~~-------~~~a~~~a~~~~~qG-~y~eA~~ly~rAL~i~~~-~~~~~~~~~lg~~~  272 (441)
                      ..||+++-|+.+|.|+-... ...       ....+++|.-...++ +|++|..+.+||+++... .+.       ...+
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~-------~~~~   76 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM-------DKLS   76 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc-------cccC
Confidence            47999999999999997721 111       233466777778888 999999999999999743 221       1112


Q ss_pred             cchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549          273 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG  322 (441)
Q Consensus       273 ~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va  322 (441)
                      ....+..+.++..|+.+|...+.++-.+. -.+++..-+.-+| +||.+-
T Consensus        77 ~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~  124 (278)
T PF08631_consen   77 PDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF  124 (278)
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH
Confidence            22345677788999999999998865554 5556666666666 577766

It is also involved in sporulation [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.29  E-value=0.0097  Score=38.79  Aligned_cols=29  Identities=31%  Similarity=0.461  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      ++..+|.+|..+|+|++|++.|++++.+.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            46799999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.25  E-value=0.04  Score=52.70  Aligned_cols=98  Identities=18%  Similarity=0.254  Sum_probs=69.4

Q ss_pred             cCCHHHHHHHHHhhhh----ccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          205 HGNLESAESFFKGLQE----EEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       205 qG~y~eAe~l~~~aL~----~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .-.+++|..-|.-|+-    ....+   +...+.+|.+|+.+|+-++...++++|++.+++.-...+.+.   +.|.   
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~---~~~~---  163 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI---EGMD---  163 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC---CCch---
Confidence            3457888888887776    12122   344566799999999999999999999998766544112211   2222   


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                       ....+.-+|.+++..|++++|...|.+.+.-
T Consensus       164 -~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  164 -EATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             -HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence             2345678999999999999999998887753

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.24  E-value=0.13  Score=49.24  Aligned_cols=201  Identities=15%  Similarity=0.154  Sum_probs=120.7

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGL-YLQLGQDDTSSVVADKCLQLCEKHKPE  182 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l-~~~~G~~~~A~~l~~~~L~i~~~~~~~  182 (441)
                      ....|..+.-.|.+|.+.|=++=|.--|.+++.|.+...     ...|..|+ +.+-|+++.|..-++..+++-   .. 
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~-----~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~-  131 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP-----EVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PT-  131 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH-----HHHHHHHHHHHhcccchHHHHHhhhHhccC---Cc-
Confidence            446788899999999999999999999999998887653     44565555 557788988888777665332   11 


Q ss_pred             cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh--------------cc-CCch-HHHHHHHH------------
Q 013549          183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE--------------EE-GCTG-SAALSYGE------------  234 (441)
Q Consensus       183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~--------------~~-~~~~-~~a~~~a~------------  234 (441)
                       +       .++.-..|+....-|||.-|..=|.+--.              .+ +..+ .+-.++..            
T Consensus       132 -y-------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~  203 (297)
T COG4785         132 -Y-------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGW  203 (297)
T ss_pred             -c-------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhH
Confidence             1       12222345555678888777644433222              00 1111 11122211            


Q ss_pred             --HHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          235 --YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       235 --~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                        +-...|+..+ +.+++++.+..++      ...++      ++ ..-++.-||-.|..+|+.++|..+|+-|+.-.--
T Consensus       204 ~iV~~yLgkiS~-e~l~~~~~a~a~~------n~~~A------e~-LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy  269 (297)
T COG4785         204 NIVEFYLGKISE-ETLMERLKADATD------NTSLA------EH-LTETYFYLGKYYLSLGDLDEATALFKLAVANNVY  269 (297)
T ss_pred             HHHHHHHhhccH-HHHHHHHHhhccc------hHHHH------HH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence              2223455554 5667777766321      11232      22 2357889999999999999999999987654322


Q ss_pred             hhCCCCchHHHHHHHHHHHHHHhhchh
Q 013549          313 LFGSHHPKVGVVLTCLALMFRNKAMQE  339 (441)
Q Consensus       313 ~lG~~HP~va~~l~nLa~ly~~qG~~e  339 (441)
                      -|    ..-.-.+..|+.++..|...+
T Consensus       270 nf----VE~RyA~~EL~~l~q~~~~l~  292 (297)
T COG4785         270 NF----VEHRYALLELSLLGQDQDDLA  292 (297)
T ss_pred             HH----HHHHHHHHHHHHhccccchhh
Confidence            12    112334555666666554433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.24  E-value=0.08  Score=50.63  Aligned_cols=102  Identities=15%  Similarity=0.167  Sum_probs=77.8

Q ss_pred             ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549          239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH  318 (441)
Q Consensus       239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H  318 (441)
                      --.+++|...|.-||-...-.+.   ++.          ........||-+|..+|+-++...++++|+..+++.+-.+.
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~---~~s----------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~  156 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKE---KPS----------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED  156 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCC---CHH----------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence            35688999999999977532221   110          12223458999999999999999999999999999975554


Q ss_pred             c-----hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          319 P-----KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       319 P-----~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      .     +-...+.=+|.++.+.|++++|      ...|.+.+...+
T Consensus       157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA------~~~fs~vi~~~~  196 (214)
T PF09986_consen  157 FPIEGMDEATLLYLIGELNRRLGNYDEA------KRWFSRVIGSKK  196 (214)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHcCCC
Confidence            4     2357788899999999999987      788888866544

>PRK11906 transcriptional regulator; Provisional

Probab=96.16  E-value=0.18  Score=53.08  Aligned_cols=129  Identities=11%  Similarity=0.075  Sum_probs=79.9

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES---GNYVEAIEKLQKVENFKNSILGVRVAAMEALAG  154 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~q---G~y~eA~e~~~ral~i~~~~lg~~~~al~~La~  154 (441)
                      ......+|+.++++|+..+     +-.|..+.++..+|.+++..   |-.+ -+.-                        
T Consensus       270 t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~------------------------  319 (458)
T PRK11906        270 TPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSE-LELA------------------------  319 (458)
T ss_pred             CHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCC-chHH------------------------
Confidence            3456889999999999654     34678888888888887653   2211 0000                        


Q ss_pred             HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHH
Q 013549          155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGE  234 (441)
Q Consensus       155 l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~  234 (441)
                             -.+|..++++++++-       .     ....+....|.+....|+++.|..+|++|+.-.+....+...+|.
T Consensus       320 -------~~~a~~~A~rAveld-------~-----~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~  380 (458)
T PRK11906        320 -------AQKALELLDYVSDIT-------T-----VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL  380 (458)
T ss_pred             -------HHHHHHHHHHHHhcC-------C-----CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence                   011222223332111       0     011223345666667777888888888888865555555555666


Q ss_pred             HHHHccChHHHHHHHHHHHHH
Q 013549          235 YLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       235 ~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      +..--|+.++|.+..++|+..
T Consensus       381 ~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        381 VHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             HHHHcCCHHHHHHHHHHHhcc
Confidence            666778888888888888876

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.08  E-value=0.045  Score=45.17  Aligned_cols=82  Identities=13%  Similarity=0.216  Sum_probs=60.5

Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      ..|+|.+|.+...+..+.......   ...        ......++.++|.++...|++++|...+++|+.+.++.  .+
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~---~~~--------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D   76 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNN---SSS--------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GD   76 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhccc---chh--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CC
Confidence            679999999999999998532221   000        00122357899999999999999999999999999986  34


Q ss_pred             CchHHHHHHHHHHHH
Q 013549          318 HPKVGVVLTCLALMF  332 (441)
Q Consensus       318 HP~va~~l~nLa~ly  332 (441)
                      +..++.++..+..+.
T Consensus        77 ~~~l~~al~~~~~l~   91 (94)
T PF12862_consen   77 RRCLAYALSWLANLL   91 (94)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            556666666666554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.07  E-value=0.078  Score=46.66  Aligned_cols=100  Identities=17%  Similarity=0.102  Sum_probs=74.6

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCc--------------hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAE--------------SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV  144 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h--------------~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~  144 (441)
                      .|...+++..+++++.++...+-++.              .....++..++..+...|+|++|+..+++++.+.+-.   
T Consensus        19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---   95 (146)
T PF03704_consen   19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD---   95 (146)
T ss_dssp             TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---
Confidence            35678999999999998866554442              2356778888889999999999999999998877542   


Q ss_pred             hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549          145 RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE  182 (441)
Q Consensus       145 ~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~  182 (441)
                       -..+..++.+|..+|+..+|..+|+++...+....+.
T Consensus        96 -E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~  132 (146)
T PF03704_consen   96 -EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI  132 (146)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred             -HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence             1255668889999999999999999998887765543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.05  E-value=0.082  Score=50.04  Aligned_cols=104  Identities=20%  Similarity=0.091  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY  184 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~  184 (441)
                      .-+..+-.=|+-++..|+|.+|...|+.||.++++.... +...+.                                  
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~----------------------------------  138 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYS----------------------------------  138 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHh----------------------------------
Confidence            456777788899999999999999999999999875311 000011                                  


Q ss_pred             hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                                  ..+.+.+.+++++.|+.-..+++...+....+...-|.+|..+.+|++|++-|++.+++
T Consensus       139 ------------Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  139 ------------NRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             ------------hhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence                        12334457888888888888888865555555566688888888999999999988877

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.00  E-value=0.016  Score=37.93  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      |.++..+|.+|..+|++++|++.|++++++.+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            46789999999999999999999999988765

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=95.99  E-value=0.036  Score=56.11  Aligned_cols=91  Identities=11%  Similarity=0.020  Sum_probs=68.6

Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      |+-|..||+|+||+++|-++++..      .+++              ....|-|..|..+.+|..||.-.+.|+.+-..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~------P~Np--------------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVY------PHNP--------------VYHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccC------CCCc--------------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            677899999999999999999871      1111              12468999999999999999999999987654


Q ss_pred             hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      .        ...|..-+..-...|+.+||      ..-|+++|++
T Consensus       164 Y--------~KAYSRR~~AR~~Lg~~~EA------KkD~E~vL~L  194 (536)
T KOG4648|consen  164 Y--------VKAYSRRMQARESLGNNMEA------KKDCETVLAL  194 (536)
T ss_pred             H--------HHHHHHHHHHHHHHhhHHHH------HHhHHHHHhh
Confidence            3        34555556666666665554      7778888766

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.96  E-value=0.02  Score=40.29  Aligned_cols=38  Identities=26%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV  324 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~  324 (441)
                      +...||.+|..+|++++|+.+|+++++.     .|++|.+-..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHHHH
Confidence            4678999999999999999999999984     4666654443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.91  E-value=0.17  Score=45.35  Aligned_cols=88  Identities=16%  Similarity=0.152  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      ...+-|.-....|+|++|+..++....-+          ..|.       ..-.+...|+-+|..+|+|++|..-+++-+
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry----------P~g~-------ya~qAqL~l~yayy~~~~y~~A~a~~~rFi   74 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRY----------PFGE-------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFI   74 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcC----------CCCc-------ccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34455666678899999999988855431          2221       112467899999999999999999998887


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549          308 TKTEELFGSHHPKVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~  337 (441)
                      .     |-|.||.+--++.-.|..+..|..
T Consensus        75 r-----LhP~hp~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   75 R-----LHPTHPNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             H-----hCCCCCCccHHHHHHHHHHHHHhh
Confidence            6     569999999999999999888764

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.84  E-value=0.19  Score=44.24  Aligned_cols=95  Identities=18%  Similarity=0.105  Sum_probs=67.9

Q ss_pred             HHcCCHHHHHHHHHhhhh--------ccCC--------------chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549          203 LAHGNLESAESFFKGLQE--------EEGC--------------TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK  260 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~--------~~~~--------------~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~  260 (441)
                      ...|+.+++...+++++.        +...              ...+...++..+...|++++|+.++++++.+-    
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d----   92 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD----   92 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS----
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC----
Confidence            357778888888888877        1011              01233456777889999999999999999981    


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                            .+      .+    .....|-.+|..+|++.+|...|++.-....+-+|-+
T Consensus        93 ------P~------~E----~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   93 ------PY------DE----EAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             ------TT-------H----HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred             ------CC------CH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence                  11      01    2456788899999999999999999999999999964

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.80  E-value=0.083  Score=47.26  Aligned_cols=57  Identities=19%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccC---CchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          199 GLVELAHGNLESAESFFKGLQEEEG---CTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~~~---~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      |...+..|+|++|++.|+......+   -...+-+.++.+|..+|+|++|..-|+|=|..
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3344689999999999999988332   33456678899999999999999999998887

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.80  E-value=0.02  Score=37.43  Aligned_cols=30  Identities=23%  Similarity=0.521  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e  311 (441)
                      ++..+|.+|..+|++++|...|++++++..
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            468999999999999999999999999864

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.79  E-value=0.12  Score=48.04  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhhhhccCCchHHHHHHHHHHHHccCh---HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH
Q 013549          208 LESAESFFKGLQEEEGCTGSAALSYGEYLHATRNF---LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF  284 (441)
Q Consensus       208 y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y---~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~  284 (441)
                      |++|.+-++......+.......+.|.++..+.++   .++..||+.|+.=+++...      +     .|+  .-.++.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~------I-----~P~--~hdAlw   73 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK------I-----NPN--KHDALW   73 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH------H------TT---HHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh------c-----CCc--hHHHHH
Confidence            45555555555555555566677777766655444   4566677766665443322      0     021  125789


Q ss_pred             HHHHHHHHcCC----HHHHHHHHHHHHHHHHHhh
Q 013549          285 ALGQLEAHMGN----FGDAEEILTRTLTKTEELF  314 (441)
Q Consensus       285 nLg~ly~~qG~----y~eAe~l~~rAL~i~e~~l  314 (441)
                      +||++|..+|.    -.+|+++|++|..-+++..
T Consensus        74 ~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv  107 (186)
T PF06552_consen   74 CLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV  107 (186)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence            99999999876    4688899999988888763

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.77  E-value=1.2  Score=52.45  Aligned_cols=211  Identities=14%  Similarity=0.088  Sum_probs=136.8

Q ss_pred             CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549           55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      +..-..+=..|.||-..|+       .-+.-..++|+|-..-         +--.++..|..+|..-+++++|.++|++.
T Consensus      1493 eeEKLNiWiA~lNlEn~yG-------~eesl~kVFeRAcqyc---------d~~~V~~~L~~iy~k~ek~~~A~ell~~m 1556 (1710)
T KOG1070|consen 1493 EEEKLNIWIAYLNLENAYG-------TEESLKKVFERACQYC---------DAYTVHLKLLGIYEKSEKNDEADELLRLM 1556 (1710)
T ss_pred             hHHHHHHHHHHHhHHHhhC-------cHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence            4455666677777777763       1234566777776533         34567888888999999999999999988


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      ++-..+.    ...|--.+...+.+.+-.+|..+..++|..+.++.      +..+..    -.+...+..|+-+.+..+
T Consensus      1557 ~KKF~q~----~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e------Hv~~Is----kfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1557 LKKFGQT----RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE------HVEFIS----KFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred             HHHhcch----hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh------hHHHHH----HHHHHHhhcCCchhhHHH
Confidence            7765433    34555555556666666677778888877665522      111111    123445689999999999


Q ss_pred             HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH-Hc
Q 013549          215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA-HM  293 (441)
Q Consensus       215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~-~q  293 (441)
                      |+..|...|--.+...-|...-..+|.-+-+..+|+|+++.           .+.     +.  .+-.+++-=.-|. .-
T Consensus      1623 fEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-----------~l~-----~k--kmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1623 FEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-----------KLS-----IK--KMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred             HHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-----------CCC-----hh--HhHHHHHHHHHHHHhc
Confidence            99999966555567777776667789999999999999987           122     11  1122332222222 33


Q ss_pred             CCHHHHHHHHHHHHHHHHHh
Q 013549          294 GNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       294 G~y~eAe~l~~rAL~i~e~~  313 (441)
                      |+-...|..=.||++.-+.+
T Consensus      1685 Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1685 GDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred             CchhhHHHHHHHHHHHHHHh
Confidence            66666666666666655543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=0.73  Score=43.45  Aligned_cols=134  Identities=18%  Similarity=0.184  Sum_probs=83.8

Q ss_pred             HHhcCCcc---hhHHHHHHHHHHHHhcCCCcchhhh--------hhHhHHHH-HHHHHHHHcCCHHHHHHHHHhhhh---
Q 013549          156 YLQLGQDD---TSSVVADKCLQLCEKHKPENYKTYG--------AVNSRANA-VKGLVELAHGNLESAESFFKGLQE---  220 (441)
Q Consensus       156 ~~~~G~~~---~A~~l~~~~L~i~~~~~~~~~~~~~--------~l~~~a~a-l~gl~~~~qG~y~eAe~l~~~aL~---  220 (441)
                      |++.++-+   +|...|++.++......+......+        .......+ -..-.+...|++++|+..++.+++   
T Consensus        41 ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~  120 (207)
T COG2976          41 YWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK  120 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch
Confidence            55555544   6777788877666443331111111        11000001 122344579999999999999997   


Q ss_pred             ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHH
Q 013549          221 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE  300 (441)
Q Consensus       221 ~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe  300 (441)
                      ++.-..-+..++|.+...+|+|++|.......       ++    +.+.          .....--|.++..+|+-++|.
T Consensus       121 De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~----~~w~----------~~~~elrGDill~kg~k~~Ar  179 (207)
T COG2976         121 DENLKALAALRLARVQLQQKKADAALKTLDTI-------KE----ESWA----------AIVAELRGDILLAKGDKQEAR  179 (207)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------cc----ccHH----------HHHHHHhhhHHHHcCchHHHH
Confidence            22222344578899999999999998765431       21    1111          011234699999999999999


Q ss_pred             HHHHHHHHHH
Q 013549          301 EILTRTLTKT  310 (441)
Q Consensus       301 ~l~~rAL~i~  310 (441)
                      .-|++||.+.
T Consensus       180 ~ay~kAl~~~  189 (207)
T COG2976         180 AAYEKALESD  189 (207)
T ss_pred             HHHHHHHHcc
Confidence            9999999874

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.17  Score=50.41  Aligned_cols=38  Identities=5%  Similarity=-0.003  Sum_probs=25.8

Q ss_pred             CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549          103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus       103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      .+|.-+....-||.+|..+|+++.|..-|.+|+.+..+
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~  188 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD  188 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC
Confidence            35555666667777777777777777777777666543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.68  E-value=1.1  Score=50.36  Aligned_cols=171  Identities=17%  Similarity=0.133  Sum_probs=96.9

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      .||..-...+==|+++.|    +|+++||..++|---.     .++++   -.||..+-.+|.++|++++|..+|+++..
T Consensus        38 k~Pn~~~a~vLkaLsl~r----~gk~~ea~~~Le~~~~-----~~~~D---~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~  105 (932)
T KOG2053|consen   38 KHPNALYAKVLKALSLFR----LGKGDEALKLLEALYG-----LKGTD---DLTLQFLQNVYRDLGKLDEAVHLYERANQ  105 (932)
T ss_pred             HCCCcHHHHHHHHHHHHH----hcCchhHHHHHhhhcc-----CCCCc---hHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            456555555555666644    6899999966654332     22332   34577778899999999999999999876


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH------
Q 013549          137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES------  210 (441)
Q Consensus       137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e------  210 (441)
                      ..++ .    ..+..+...|.+-+.|.+-.   +-+++++...+...|        +..+...++...+-..++      
T Consensus       106 ~~P~-e----ell~~lFmayvR~~~yk~qQ---kaa~~LyK~~pk~~y--------yfWsV~Slilqs~~~~~~~~~~i~  169 (932)
T KOG2053|consen  106 KYPS-E----ELLYHLFMAYVREKSYKKQQ---KAALQLYKNFPKRAY--------YFWSVISLILQSIFSENELLDPIL  169 (932)
T ss_pred             hCCc-H----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCcccc--------hHHHHHHHHHHhccCCcccccchh
Confidence            6654 1    12233344455555554332   223444544442211        222333443333333222      


Q ss_pred             ---HHHHHHhhhhccCCchHH--HHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          211 ---AESFFKGLQEEEGCTGSA--ALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       211 ---Ae~l~~~aL~~~~~~~~~--a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                         |+..+++.++........  +.-|-.++..+|+|+||.+.+..-+.-
T Consensus       170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~  219 (932)
T KOG2053|consen  170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE  219 (932)
T ss_pred             HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence               555666666533222222  234556778899999999998766654

>PRK11906 transcriptional regulator; Provisional

Probab=95.61  E-value=0.27  Score=51.81  Aligned_cols=127  Identities=13%  Similarity=0.080  Sum_probs=90.1

Q ss_pred             HHHHHHHHcCC---HHHHHHHHHhhh---hccCCchHHHHHHHHHHHH---------ccChHHHHHHHHHHHHHHHhhcc
Q 013549          197 VKGLVELAHGN---LESAESFFKGLQ---EEEGCTGSAALSYGEYLHA---------TRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       197 l~gl~~~~qG~---y~eAe~l~~~aL---~~~~~~~~~a~~~a~~~~~---------qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      +.|+.++.++.   .++|..+|.+++   ..++....+...++.++..         ...-.+|..+-+||+++   ...
T Consensus       260 lrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel---d~~  336 (458)
T PRK11906        260 LAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI---TTV  336 (458)
T ss_pred             HHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---CCC
Confidence            45665555554   578999999999   4333333222223333221         23345788888888887   111


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                       ...++..+|.++...|+++.|..+|+||+.+        .|..+.++.-.|.+..--|+.++|
T Consensus       337 -----------------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a  391 (458)
T PRK11906        337 -----------------DGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEA  391 (458)
T ss_pred             -----------------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHH
Confidence                             1246778999999999999999999999975        488888889899999999999887


Q ss_pred             hhhHHHHHHHHHHHHH
Q 013549          342 SALLIQEGLYRRALEF  357 (441)
Q Consensus       342 ~~~~~Ae~ly~rAL~i  357 (441)
                            ....++|+..
T Consensus       392 ------~~~i~~alrL  401 (458)
T PRK11906        392 ------RICIDKSLQL  401 (458)
T ss_pred             ------HHHHHHHhcc
Confidence                  7777787655

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.48  E-value=0.009  Score=40.02  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=27.7

Q ss_pred             HHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHH
Q 013549           89 LEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIE  129 (441)
Q Consensus        89 ~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e  129 (441)
                      |+++++        .+|.-..++++||.+|..+|++++|++
T Consensus         2 y~kAie--------~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIE--------LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHH--------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            667775        356778899999999999999999973

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.45  E-value=1.2  Score=43.63  Aligned_cols=179  Identities=20%  Similarity=0.247  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR-VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT  186 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~-~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~  186 (441)
                      +..+.+=|....+.|+|++|+..|+....-.+  .+.- -.+.-.++..++.-++|++|....++-+.+.-.....    
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p--~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP--FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh----
Confidence            45566666677799999999999998753222  1111 1245557777888999999999888887555433322    


Q ss_pred             hhhhHhHHHHHHHHHHHH--------cCCHHHHHHHHHhhhhccCCc---hHH------------H--HHHHHHHHHccC
Q 013549          187 YGAVNSRANAVKGLVELA--------HGNLESAESFFKGLQEEEGCT---GSA------------A--LSYGEYLHATRN  241 (441)
Q Consensus       187 ~~~l~~~a~al~gl~~~~--------qG~y~eAe~l~~~aL~~~~~~---~~~------------a--~~~a~~~~~qG~  241 (441)
                           .++..+.|+.+..        |.--.+|..-|+..+..-|..   +++            .  ...|..|...|.
T Consensus       108 -----dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~  182 (254)
T COG4105         108 -----DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA  182 (254)
T ss_pred             -----hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                 2334466777653        222345666667776622211   111            1  234778999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH
Q 013549          242 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV  321 (441)
Q Consensus       242 y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v  321 (441)
                      |.-|.--++++++-...+.      .           .--++.-|...|..+|-.++|..        ..+++|.+-|+.
T Consensus       183 ~~AA~nR~~~v~e~y~~t~------~-----------~~eaL~~l~eaY~~lgl~~~a~~--------~~~vl~~N~p~s  237 (254)
T COG4105         183 YVAAINRFEEVLENYPDTS------A-----------VREALARLEEAYYALGLTDEAKK--------TAKVLGANYPDS  237 (254)
T ss_pred             hHHHHHHHHHHHhcccccc------c-----------hHHHHHHHHHHHHHhCChHHHHH--------HHHHHHhcCCCC
Confidence            9999999999887632111      0           11357788999999999999965        467788777765


Q ss_pred             H
Q 013549          322 G  322 (441)
Q Consensus       322 a  322 (441)
                      -
T Consensus       238 ~  238 (254)
T COG4105         238 Q  238 (254)
T ss_pred             c
Confidence            4

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.39  E-value=1.3  Score=47.39  Aligned_cols=171  Identities=16%  Similarity=0.167  Sum_probs=102.9

Q ss_pred             cCChHHHHHHHHHHHHhhhhhhhhh----HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHH
Q 013549          121 SGNYVEAIEKLQKVENFKNSILGVR----VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANA  196 (441)
Q Consensus       121 qG~y~eA~e~~~ral~i~~~~lg~~----~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~a  196 (441)
                      .|+-+.++.++.++.+ .....++-    .-.++............+.-...++++|+-..+..|.     ..+.   .-
T Consensus       201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~-----s~lf---l~  271 (468)
T PF10300_consen  201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN-----SALF---LF  271 (468)
T ss_pred             CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC-----cHHH---HH
Confidence            7899999999988754 21111111    0111111111111100122223334444444444432     1111   12


Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCc---h-HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCT---G-SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN  272 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~---~-~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~  272 (441)
                      ..|.++..+|+.++|+..|++++......   . -....++..+..+++|++|...+.+-++.   .+       ..   
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---s~-------WS---  338 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---SK-------WS---  338 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---cc-------cH---
Confidence            35777889999999999999999722111   1 12244577888999999999999987765   11       11   


Q ss_pred             cchhHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhhCCCCc
Q 013549          273 MALEEVALAATFALGQLEAHMGNF-------GDAEEILTRTLTKTEELFGSHHP  319 (441)
Q Consensus       273 ~~~~~~~~~al~nLg~ly~~qG~y-------~eAe~l~~rAL~i~e~~lG~~HP  319 (441)
                            ...-.+-.|..|...|+.       ++|.+++.++-....++.|..-|
T Consensus       339 ------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp  386 (468)
T PF10300_consen  339 ------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP  386 (468)
T ss_pred             ------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence                  111235678888889999       99999999999999998885555

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.38  E-value=0.013  Score=39.17  Aligned_cols=34  Identities=12%  Similarity=0.009  Sum_probs=30.3

Q ss_pred             HHHhhhhccCCchHHHHHHHHHHHHccChHHHHH
Q 013549          214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKK  247 (441)
Q Consensus       214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~  247 (441)
                      +|+++|+.+|....+..++|.+|..+|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999888888999999999999999999963

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.28  E-value=0.04  Score=38.71  Aligned_cols=33  Identities=18%  Similarity=0.117  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      .++..+|.+|..+|++++|+..|+++++..+..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            357899999999999999999999999887764

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.28  E-value=1.6  Score=43.40  Aligned_cols=229  Identities=14%  Similarity=0.209  Sum_probs=136.0

Q ss_pred             hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHHh
Q 013549           81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RVAAMEALAGLYLQ  158 (441)
Q Consensus        81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~--~~~al~~La~l~~~  158 (441)
                      ..++|+.-|+++|+..    |+.-..--.++-.|-.+++++|+|.+-.+.|.+.+.--.+.+--  .-.+.|++...-..
T Consensus        42 ~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt  117 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST  117 (440)
T ss_pred             CHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence            6889999999999876    33333445788899999999999999999999988766654311  01233443332111


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCC-cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh------ccCCc--hH-H
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE------EEGCT--GS-A  228 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~-~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~------~~~~~--~~-~  228 (441)
                      ..+-+.-..+|+.-|+.++....+ -|-       .-+.-+|-+|+..|.|..-+++.++.-.      ++...  +. .
T Consensus       118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWF-------KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL  190 (440)
T KOG1464|consen  118 SKNMDLLQEFYETTLDALKDAKNERLWF-------KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL  190 (440)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcceeee-------eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence            122233344555555555443311 121       1112246777888888887777665433      11111  11 1


Q ss_pred             HHHHH---HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH-HHHHHHHHcCCHHHHHHHHH
Q 013549          229 ALSYG---EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILT  304 (441)
Q Consensus       229 a~~~a---~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~-nLg~ly~~qG~y~eAe~l~~  304 (441)
                      .--||   ..|..|.+-.+=..+|++||.|-   -.      +      |+...++..- .=|-.+..-|+|++|-.-|-
T Consensus       191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiK---SA------I------PHPlImGvIRECGGKMHlreg~fe~AhTDFF  255 (440)
T KOG1464|consen  191 LEIYALEIQMYTEQKNNKKLKALYEQALHIK---SA------I------PHPLIMGVIRECGGKMHLREGEFEKAHTDFF  255 (440)
T ss_pred             hhhHhhHhhhhhhhcccHHHHHHHHHHHHhh---cc------C------CchHHHhHHHHcCCccccccchHHHHHhHHH
Confidence            22233   36778889899999999999992   11      0      1112333332 23556777899999999998


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549          305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKA  336 (441)
Q Consensus       305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG  336 (441)
                      +|..-+.+.-.|... +-.-+--||.+....|
T Consensus       256 EAFKNYDEsGspRRt-tCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  256 EAFKNYDESGSPRRT-TCLKYLVLANMLMKSG  286 (440)
T ss_pred             HHHhcccccCCcchh-HHHHHHHHHHHHHHcC
Confidence            888887765443332 2222334555554444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.37  Score=48.02  Aligned_cols=120  Identities=18%  Similarity=0.158  Sum_probs=80.3

Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHH---------------HHHHHHhhcccCCCC
Q 013549          202 ELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQK---------------VIEVLAEQKDFSDMN  266 (441)
Q Consensus       202 ~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~r---------------AL~i~~~~~~~~~~~  266 (441)
                      ....|++.+|.++|..++...+....+...|+++|-..|++++|..++..               -|+....-....+..
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~  223 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ  223 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence            35799999999999999995555677889999999999999998888765               133322222100000


Q ss_pred             Ccc-ccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH
Q 013549          267 TLG-SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT  326 (441)
Q Consensus       267 ~lg-~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~  326 (441)
                      .+- ...-.|++  ...-..||..|...|++++|.+++   |.|.++..|.+.+.+...+-
T Consensus       224 ~l~~~~aadPdd--~~aa~~lA~~~~~~g~~e~Ale~L---l~~l~~d~~~~d~~~Rk~ll  279 (304)
T COG3118         224 DLQRRLAADPDD--VEAALALADQLHLVGRNEAALEHL---LALLRRDRGFEDGEARKTLL  279 (304)
T ss_pred             HHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH---HHHHHhcccccCcHHHHHHH
Confidence            000 00111222  234678999999999999997766   55666666666666666655

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.43  Score=48.46  Aligned_cols=160  Identities=16%  Similarity=0.091  Sum_probs=104.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHH
Q 013549          115 STLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA  194 (441)
Q Consensus       115 a~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a  194 (441)
                      +.+++-+|++.+|-....+.|+-.+.-+    .+++--..+|..+|+.+.....+.+.+.-....        .....+ 
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDl----la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d--------lp~~sY-  176 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDL----LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD--------LPCYSY-  176 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhh----hhhhhhhhHHHhccchhhhhhHHHHhccccCCC--------CcHHHH-
Confidence            4567889999999999988876554321    233333445666777766666555543211111        112222 


Q ss_pred             HHHHHHHH---HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549          195 NAVKGLVE---LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC  271 (441)
Q Consensus       195 ~al~gl~~---~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~  271 (441)
                        +.|++.   ...|-|++||+.-.+++...+...-+....+-++...|++.|+.++.++.=+-+.  .+     .    
T Consensus       177 --v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s-----~----  243 (491)
T KOG2610|consen  177 --VHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QS-----W----  243 (491)
T ss_pred             --HHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hh-----h----
Confidence              334332   3699999999999999996555555677788899999999999999888666642  11     1    


Q ss_pred             ccchhHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 013549          272 NMALEEVALAATF--ALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       272 ~~~~~~~~~~al~--nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                             .+++.|  .-|..|..-+.|+.|++.|.+-+
T Consensus       244 -------mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  244 -------MLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             -------HHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence                   123333  45666777789999999887744

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.07  E-value=0.15  Score=47.47  Aligned_cols=77  Identities=17%  Similarity=0.289  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          280 LAATFALGQLEAHMGNF---GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y---~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                      ..++++-|.++..+.++   .++.++++.|+..+++.+- =+|.--.++.|||..|..+|.+..-  ..+|+.+|++|.+
T Consensus        25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d--~~~A~~~F~kA~~  101 (186)
T PF06552_consen   25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPD--TAEAEEYFEKATE  101 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHH
Confidence            35678888888887777   5699999999999999864 3577778999999999999985432  2356788888887


Q ss_pred             Hhh
Q 013549          357 FLK  359 (441)
Q Consensus       357 i~~  359 (441)
                      -++
T Consensus       102 ~Fq  104 (186)
T PF06552_consen  102 YFQ  104 (186)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.88  E-value=0.29  Score=52.21  Aligned_cols=123  Identities=17%  Similarity=0.124  Sum_probs=89.8

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      ....++|..+++..+..        +|.=+--+..-|.++..+|+.++|++.|++++........+....+..++.++..
T Consensus       246 ~~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~  317 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF  317 (468)
T ss_pred             CCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence            44577888888888863        4566777999999999999999999999998765544433344466778888999


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCH-------HHHHHHHHhhhh
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNL-------ESAESFFKGLQE  220 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y-------~eAe~l~~~aL~  220 (441)
                      +++|.+|..++.++.+..      .|+  ..+..+   +.|..+...|+.       ++|..+|.++..
T Consensus       318 ~~~w~~A~~~f~~L~~~s------~WS--ka~Y~Y---~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  318 QHDWEEAAEYFLRLLKES------KWS--KAFYAY---LAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HchHHHHHHHHHHHHhcc------ccH--HHHHHH---HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            999999998888775321      232  222222   456667778887       777788877766

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.70  E-value=7.2  Score=41.61  Aligned_cols=167  Identities=19%  Similarity=0.147  Sum_probs=110.8

Q ss_pred             HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh
Q 013549           65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV  144 (441)
Q Consensus        65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~  144 (441)
                      -+|||+-- . . ...+.+.+.++|+.||.+.    .-.|-.-+..-.--|....+|-+...|...+-.|+-.++..   
T Consensus       368 WinYalye-E-l-e~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---  437 (677)
T KOG1915|consen  368 WINYALYE-E-L-EAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---  437 (677)
T ss_pred             HHHHHHHH-H-H-HhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---
Confidence            35666542 1 1 2346789999999999855    34577888888888999999999999999888887666553   


Q ss_pred             hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-C
Q 013549          145 RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE-G  223 (441)
Q Consensus       145 ~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~-~  223 (441)
                        .....-..+-.++++       +++|-.++++-..-.+++-...     .--+-.....|+.|.|-.+|+-|+... .
T Consensus       438 --KlFk~YIelElqL~e-------fDRcRkLYEkfle~~Pe~c~~W-----~kyaElE~~LgdtdRaRaifelAi~qp~l  503 (677)
T KOG1915|consen  438 --KLFKGYIELELQLRE-------FDRCRKLYEKFLEFSPENCYAW-----SKYAELETSLGDTDRARAIFELAISQPAL  503 (677)
T ss_pred             --hHHHHHHHHHHHHhh-------HHHHHHHHHHHHhcChHhhHHH-----HHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence              233334444445555       4566666555442112111111     111333457999999999999999832 2


Q ss_pred             CchHH-HHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          224 CTGSA-ALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       224 ~~~~~-a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      ..+.+ .-.|-.+-...|.++.|..+|+|-|+.
T Consensus       504 dmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  504 DMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            23322 345655666889999999999999986

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.64  E-value=2  Score=42.09  Aligned_cols=164  Identities=17%  Similarity=0.139  Sum_probs=100.3

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV-AAMEALAGLYL  157 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~-~al~~La~l~~  157 (441)
                      .|+|.+|+..|+....-.     +-.|-.=+++..++-.++..|+|++|+....+=+...+.+..++- .=+-.|.. +.
T Consensus        47 ~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~-~~  120 (254)
T COG4105          47 KGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY-FF  120 (254)
T ss_pred             cCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH-hc
Confidence            589999999999988543     333445788999999999999999999999998888877644331 11112221 11


Q ss_pred             hcCC---cchhHHHHHHHHHHHHhcCCC-cch-hhhhhHhHHH-H------HHHHHHHHcCCHHHHHHHHHhhhhccCC-
Q 013549          158 QLGQ---DDTSSVVADKCLQLCEKHKPE-NYK-TYGAVNSRAN-A------VKGLVELAHGNLESAESFFKGLQEEEGC-  224 (441)
Q Consensus       158 ~~G~---~~~A~~l~~~~L~i~~~~~~~-~~~-~~~~l~~~a~-a------l~gl~~~~qG~y~eAe~l~~~aL~~~~~-  224 (441)
                      +..+   +..+..-.-..++-+....|. .|. ++.......+ .      -.+..|+..|.|.-|..-+++++...+. 
T Consensus       121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t  200 (254)
T COG4105         121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT  200 (254)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence            1121   222221112222222233322 121 1111101111 1      1366788899999999999999994333 


Q ss_pred             --chHHHHHHHHHHHHccChHHHHHH
Q 013549          225 --TGSAALSYGEYLHATRNFLLAKKF  248 (441)
Q Consensus       225 --~~~~a~~~a~~~~~qG~y~eA~~l  248 (441)
                        ...+..-+.+.|..+|-.++|...
T Consensus       201 ~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         201 SAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             cchHHHHHHHHHHHHHhCChHHHHHH
Confidence              344556678889999999999753

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.42  E-value=0.57  Score=44.15  Aligned_cols=56  Identities=11%  Similarity=0.110  Sum_probs=33.2

Q ss_pred             hhHHHHHHHHHHhhhccccCC--------------CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           80 ESYSQGMLVLEQCLSTQPSDG--------------QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~--------------g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      +...+|-..|+++........              |..+ .-......+|..+.+.|++++|+..++.++.
T Consensus        48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~-Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~  117 (207)
T COG2976          48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTI-YAVLAALELAKAEVEANNLDKAEAQLKQALA  117 (207)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence            345577778887776442211              1111 2233444566777888888888888777653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.07  E-value=5.9  Score=42.20  Aligned_cols=202  Identities=18%  Similarity=0.186  Sum_probs=123.9

Q ss_pred             hhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 013549           74 RSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALA  153 (441)
Q Consensus        74 ~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La  153 (441)
                      +...+|..+++|..++|+||...-    ..||    .-..-+..-...-....|.-++-||+++.+..-.    -+....
T Consensus        81 qwEesq~e~~RARSv~ERALdvd~----r~it----LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq----lWyKY~  148 (677)
T KOG1915|consen   81 QWEESQKEIQRARSVFERALDVDY----RNIT----LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ----LWYKYI  148 (677)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhccc----ccch----HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH----HHHHHH
Confidence            344789999999999999997431    1232    2333444444455566777777777776665321    233333


Q ss_pred             HHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHH
Q 013549          154 GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYG  233 (441)
Q Consensus       154 ~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a  233 (441)
                      .+-..+|+..-|..++.+=++    -.|+    ......     --...+.....+.|-.+|++-+-.|+.. ..-+.|+
T Consensus       149 ymEE~LgNi~gaRqiferW~~----w~P~----eqaW~s-----fI~fElRykeieraR~IYerfV~~HP~v-~~wikya  214 (677)
T KOG1915|consen  149 YMEEMLGNIAGARQIFERWME----WEPD----EQAWLS-----FIKFELRYKEIERARSIYERFVLVHPKV-SNWIKYA  214 (677)
T ss_pred             HHHHHhcccHHHHHHHHHHHc----CCCc----HHHHHH-----HHHHHHHhhHHHHHHHHHHHHheecccH-HHHHHHH
Confidence            333345666555555554321    1111    111111     1122346778899999999988755433 3456788


Q ss_pred             HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 013549          234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT-----  308 (441)
Q Consensus       234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~-----  308 (441)
                      .+-..-|+..-|...|++|++-+            |.     ++..-...+..|.--..|..|+.|..+|+=||+     
T Consensus       215 rFE~k~g~~~~aR~VyerAie~~------------~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~  277 (677)
T KOG1915|consen  215 RFEEKHGNVALARSVYERAIEFL------------GD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG  277 (677)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHh------------hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            88888999999999999999873            10     110111245677777788888888888776653     


Q ss_pred             ----------HHHHhhCCCC
Q 013549          309 ----------KTEELFGSHH  318 (441)
Q Consensus       309 ----------i~e~~lG~~H  318 (441)
                                .+|+.+|+..
T Consensus       278 raeeL~k~~~~fEKqfGd~~  297 (677)
T KOG1915|consen  278 RAEELYKKYTAFEKQFGDKE  297 (677)
T ss_pred             cHHHHHHHHHHHHHHhcchh
Confidence                      6788888643

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.06  E-value=0.075  Score=34.10  Aligned_cols=31  Identities=29%  Similarity=0.435  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549          110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus       110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      ++.++|.+|..+|++++|+..|++.++-.+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5789999999999999999999998766543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.04  E-value=1.9  Score=42.61  Aligned_cols=140  Identities=15%  Similarity=0.156  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549          107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT  186 (441)
Q Consensus       107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~  186 (441)
                      ...+++.+..++.-.|.|.-...++.++++-.+.   ........|+.+-+|.|+...|..++++.-+...+....+.. 
T Consensus       176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e---~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~-  251 (366)
T KOG2796|consen  176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE---QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK-  251 (366)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc---ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh-
Confidence            5678999999999999999999999998774422   223356778889999999999999998764433333322110 


Q ss_pred             hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                           ....-....+++-+.+|.+|-..|.+++..++.++.+.++=|.++...|+...|..-.+.++++
T Consensus       252 -----~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  252 -----IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             -----HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                 0111123556777899999999999999977777766677787888899999999999999888

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.99  E-value=0.17  Score=35.00  Aligned_cols=36  Identities=28%  Similarity=0.296  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      ++.-||.+-...++|++|.+=|++||+|+++.+.++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~   38 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE   38 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            356899999999999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5

Probab=93.94  E-value=0.13  Score=47.80  Aligned_cols=43  Identities=23%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH
Q 013549          279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV  321 (441)
Q Consensus       279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v  321 (441)
                      .+.+++||-.-|..+|+|..|.++.++||+-.++..|.+||+|
T Consensus       139 rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v  181 (181)
T PF09311_consen  139 RLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV  181 (181)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence            6788999999999999999999999999999999999999986

This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.

>smart00028 TPR Tetratricopeptide repeats

Probab=93.92  E-value=0.088  Score=31.90  Aligned_cols=29  Identities=24%  Similarity=0.457  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      +..++|.+|..+|+|++|...|++++.+.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            46799999999999999999999998763

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.82  E-value=0.43  Score=44.20  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhc---cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEE---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                      +|..|...|++++|.+.|.++.+.   ..+..+..+++-.+...+|+|.....+..||-.+..+  +       +  ...
T Consensus        42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~-------~--d~~  110 (177)
T PF10602_consen   42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--G-------G--DWE  110 (177)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--c-------c--hHH
Confidence            467788999999999999998882   2223445566677778899999999999999998532  1       1  000


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                       ....+.  +--|..+..+++|.+|-++|..++..+
T Consensus       111 -~~nrlk--~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  111 -RRNRLK--VYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             -HHHHHH--HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence             001122  233445556799999999999998665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=93.65  E-value=1.6  Score=42.14  Aligned_cols=191  Identities=15%  Similarity=0.202  Sum_probs=109.9

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      |-|-.+-|.-=+.|+|+|+        |..+.++|-||..+-.-|+|+-|.+.|.-++++.+..   .-+-+|.=..+| 
T Consensus        77 SlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~lNRgi~~Y-  144 (297)
T COG4785          77 SLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALY-  144 (297)
T ss_pred             hhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---hHHHhccceeee-
Confidence            4556666777777888765        5577889999999999999999999999887776532   001111111122 


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCC--------------cchh-hhhhHhHHHHHH------HHHHHHcCCHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPE--------------NYKT-YGAVNSRANAVK------GLVELAHGNLESAESFFK  216 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~--------------~~~~-~~~l~~~a~al~------gl~~~~qG~y~eAe~l~~  216 (441)
                      .-|+|..|..   ..+..+.....+              .+.+ ...+..|+.-+.      .++....|+..+ +.+|+
T Consensus       145 Y~gR~~LAq~---d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~  220 (297)
T COG4785         145 YGGRYKLAQD---DLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLME  220 (297)
T ss_pred             ecCchHhhHH---HHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHH
Confidence            2356655432   112222111111              1111 122222322111      234455676654 56777


Q ss_pred             hhhhc--cCCc-----hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHH
Q 013549          217 GLQEE--EGCT-----GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL  289 (441)
Q Consensus       217 ~aL~~--~~~~-----~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~l  289 (441)
                      ++...  ++..     ..+-.-+|..+.++|..++|..+|+-|++-.  .-+      +      .+|.  -++..|+.+
T Consensus       221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann--Vyn------f------VE~R--yA~~EL~~l  284 (297)
T COG4785         221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN--VYN------F------VEHR--YALLELSLL  284 (297)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--HHH------H------HHHH--HHHHHHHHh
Confidence            77762  1111     1222345888899999999999999988752  111      0      1221  256788888


Q ss_pred             HHHcCCHHHHH
Q 013549          290 EAHMGNFGDAE  300 (441)
Q Consensus       290 y~~qG~y~eAe  300 (441)
                      +..+.+..+++
T Consensus       285 ~q~~~~l~~~~  295 (297)
T COG4785         285 GQDQDDLAESD  295 (297)
T ss_pred             ccccchhhhhh
Confidence            88887776654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.48  E-value=0.094  Score=33.64  Aligned_cols=28  Identities=21%  Similarity=0.464  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      ++.++|.+|..+|++++|...|++.++-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999874

>smart00028 TPR Tetratricopeptide repeats

Probab=93.41  E-value=0.11  Score=31.45  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      .++.++|.++..+|+|++|+..|++++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            4678999999999999999999999876543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.29  E-value=0.045  Score=57.30  Aligned_cols=124  Identities=16%  Similarity=0.193  Sum_probs=80.3

Q ss_pred             cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHH-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA-LA-ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~-~~-al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      .+.-.|..++.+|++.... .+   +..+-.....|-+.. .. -.++-.++-.-.++.   .++--++|-|+|+++|+.
T Consensus       260 ~D~~~al~~w~~aMe~r~~-~~---e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~---d~~RmqaLiirerILgps  332 (615)
T KOG0508|consen  260 RDLLGALKYWRRAMEERES-DG---ESILEKEPLEPVLAYGYGREVNNREELEELVEDP---DEMRMQALIIRERILGPS  332 (615)
T ss_pred             HHHHHHHHHHHHHHHhhhh-cc---ccccccCCCCchhhhhhhhhcCCHHHHHHHhcCh---HHHHHHHHHHHHHHhCCC
Confidence            3566788889999988543 11   111111110010000 00 012333333333443   356789999999999999


Q ss_pred             CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc-CCCCCcchHhhhccHH
Q 013549          318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPLESEGVETKVDRTD  376 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~-~~~~~~~~~~~l~nl~  376 (441)
                      ||+|.-.+.--|.+|..+|+++.-      ..|..-||++.++ ..|-.|.|++++-..+
T Consensus       333 h~d~sYyir~rgavyad~g~~~rC------i~LWkyAL~mqQk~l~PlspmT~ssllsFa  386 (615)
T KOG0508|consen  333 HPDVSYYIRYRGAVYADSGEFERC------IRLWKYALDMQQKNLEPLSPMTASSLLSFA  386 (615)
T ss_pred             CCCceeEEEeeeeeecCCccHHHH------HHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Confidence            999999999999999999998775      8999999999854 5567777777664333

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.26  E-value=10  Score=39.46  Aligned_cols=175  Identities=14%  Similarity=0.037  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH---cCCHHHHHHHHHhhhh-ccC
Q 013549          148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA---HGNLESAESFFKGLQE-EEG  223 (441)
Q Consensus       148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~---qG~y~eAe~l~~~aL~-~~~  223 (441)
                      .+-+|.--|...-+|+.+..+.+..-.+-....    .+...+    +-..+.+...   .|+.++|...+..++. .+.
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~----~~~~~i----~~~yafALnRrn~~gdre~Al~il~~~l~~~~~  214 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDV----ANQHNI----KFQYAFALNRRNKPGDREKALQILLPVLESDEN  214 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccch----hcchHH----HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence            444555557666677776666554422200000    000111    1122333334   8999999999999777 444


Q ss_pred             CchHHHHHHHHHHHHc---------cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549          224 CTGSAALSYGEYLHAT---------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG  294 (441)
Q Consensus       224 ~~~~~a~~~a~~~~~q---------G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG  294 (441)
                      ..+.+..-.|.+|..+         ..+++|+..|+|+.++   . .   ..+.              -.|++.++.-.|
T Consensus       215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~-~---~~Y~--------------GIN~AtLL~~~g  273 (374)
T PF13281_consen  215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI---E-P---DYYS--------------GINAATLLMLAG  273 (374)
T ss_pred             CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---C-c---cccc--------------hHHHHHHHHHcC
Confidence            4455544456655432         3577899999998888   2 1   1122              258888888888


Q ss_pred             CHHHHHHHHHHHHHHHHHhhCCCC---chHHH-HHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          295 NFGDAEEILTRTLTKTEELFGSHH---PKVGV-VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       295 ~y~eAe~l~~rAL~i~e~~lG~~H---P~va~-~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      .-.+...-.++.-......+|.+-   +..-- .+..++.++---|++++|      ...+++++..
T Consensus       274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka------~~a~e~~~~l  334 (374)
T PF13281_consen  274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKA------IQAAEKAFKL  334 (374)
T ss_pred             CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHH------HHHHHHHhhc
Confidence            755554334443333333344321   11000 122233444556777665      5666666544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.15  E-value=3.8  Score=42.52  Aligned_cols=206  Identities=12%  Similarity=0.075  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh--
Q 013549           81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ--  158 (441)
Q Consensus        81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~--  158 (441)
                      .|..|..-+.+.|......++.-.--.+.++.+|=..|++.-+|+.=+.+.+..-.+-.-.+......-.-.+-.+..  
T Consensus       114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn  193 (374)
T PF13281_consen  114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN  193 (374)
T ss_pred             HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc
Confidence            344444555566665555555444455667788888899999999998888775433100011111122223333334  


Q ss_pred             -cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH---------cCCHHHHHHHHHhhhhccCCchHH
Q 013549          159 -LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA---------HGNLESAESFFKGLQEEEGCTGSA  228 (441)
Q Consensus       159 -~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~---------qG~y~eAe~l~~~aL~~~~~~~~~  228 (441)
                       .|+.++|.......+   ....+..   .+.+     .+.|-+|..         ....++|+..|.++-...+ +.-.
T Consensus       194 ~~gdre~Al~il~~~l---~~~~~~~---~d~~-----gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~  261 (374)
T PF13281_consen  194 KPGDREKALQILLPVL---ESDENPD---PDTL-----GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYS  261 (374)
T ss_pred             cCCCHHHHHHHHHHHH---hccCCCC---hHHH-----HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccc
Confidence             688877776655442   2222111   1222     244555531         2247889999999888553 4456


Q ss_pred             HHHHHHHHHHccCh-HHHHHHHHHHHHH--HHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNF-LLAKKFYQKVIEV--LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR  305 (441)
Q Consensus       229 a~~~a~~~~~qG~y-~eA~~ly~rAL~i--~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~r  305 (441)
                      +.|++.++...|.- +...++-+-...+  ....++     .+.  .+ .   .-.....++.+..-.|++++|.+.+++
T Consensus       262 GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg-----~~~--~~-~---dYWd~ATl~Ea~vL~~d~~ka~~a~e~  330 (374)
T PF13281_consen  262 GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG-----SLE--KM-Q---DYWDVATLLEASVLAGDYEKAIQAAEK  330 (374)
T ss_pred             hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc-----ccc--cc-c---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            78899888888864 4333443333222  111222     222  11 1   223345666677778999999999999


Q ss_pred             HHHH
Q 013549          306 TLTK  309 (441)
Q Consensus       306 AL~i  309 (441)
                      ++..
T Consensus       331 ~~~l  334 (374)
T PF13281_consen  331 AFKL  334 (374)
T ss_pred             Hhhc
Confidence            9865

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.10  E-value=17  Score=40.18  Aligned_cols=247  Identities=15%  Similarity=0.115  Sum_probs=148.6

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh-----h-hhhHHHHHHHH
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-----L-GVRVAAMEALA  153 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~-----l-g~~~~al~~La  153 (441)
                      +++..|+..++.........+  +......+..-.+.++...|..+++++..+++.......     . -+...++.-+.
T Consensus       153 ~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll  230 (608)
T PF10345_consen  153 KDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL  230 (608)
T ss_pred             ccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence            678899999988888665332  333445555566677788899999999999986655432     0 01122333333


Q ss_pred             HH--HHhcCCcchhHHHHHHHHHHHHhcCCCc------------------------------chhhhhhHhHHHHHHHHH
Q 013549          154 GL--YLQLGQDDTSSVVADKCLQLCEKHKPEN------------------------------YKTYGAVNSRANAVKGLV  201 (441)
Q Consensus       154 ~l--~~~~G~~~~A~~l~~~~L~i~~~~~~~~------------------------------~~~~~~l~~~a~al~gl~  201 (441)
                      .+  +...|++..+....+..-+.+.......                              |-..+.+......+.|+.
T Consensus       231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~  310 (608)
T PF10345_consen  231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH  310 (608)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence            33  4566766677665554433332222110                              111122333334456777


Q ss_pred             HHHcCCHHHHHHHHHhhhh---c-c----CCch---HHH----------H-----HHHHHHHHccChHHHHHHHHHHHHH
Q 013549          202 ELAHGNLESAESFFKGLQE---E-E----GCTG---SAA----------L-----SYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       202 ~~~qG~y~eAe~l~~~aL~---~-~----~~~~---~~a----------~-----~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      ....|..+.|++++++++.   . .    ....   ..+          .     -.+.....+|++.+|....+.....
T Consensus       311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~  390 (608)
T PF10345_consen  311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL  390 (608)
T ss_pred             HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            7788888999999999988   1 1    0000   000          0     0133445679999999999998877


Q ss_pred             HHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch--HH-HHHHHHHHHH
Q 013549          256 LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK--VG-VVLTCLALMF  332 (441)
Q Consensus       256 ~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~--va-~~l~nLa~ly  332 (441)
                      ..   .. +...+       +....-...-.|.-++..|+.+.|+..|.+.....-...++..+.  +. .+.-|+..++
T Consensus       391 ~~---~~-~~~~~-------~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~  459 (608)
T PF10345_consen  391 CQ---RS-PSKLY-------ESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIIL  459 (608)
T ss_pred             Hh---cC-ccchh-------hhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHh
Confidence            32   10 11011       111222346778889999999999999997776666666655444  33 4567888899


Q ss_pred             HHhhchh
Q 013549          333 RNKAMQE  339 (441)
Q Consensus       333 ~~qG~~e  339 (441)
                      ...+.-.
T Consensus       460 ~~~~~~~  466 (608)
T PF10345_consen  460 QYESSRD  466 (608)
T ss_pred             Hhhcccc
Confidence            8777543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.02  E-value=8.4  Score=39.46  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=102.1

Q ss_pred             HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh----ccCCchHHHH
Q 013549          155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE----EEGCTGSAAL  230 (441)
Q Consensus       155 l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~----~~~~~~~~a~  230 (441)
                      +..-.|+..+|....++.|+    ..|      .++.  +....-.++...|+.+.-.+.+++++.    +-||..-+.-
T Consensus       112 i~~~~g~~h~a~~~wdklL~----d~P------tDll--a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~G  179 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKLLD----DYP------TDLL--AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHG  179 (491)
T ss_pred             HhhccccccHHHHHHHHHHH----hCc------hhhh--hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence            34445777777666666652    222      1111  111234567789999999999999998    2333333333


Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      -|+--+...|-|++|+..-.|||+|   +..                 ...+.+.++.++.-.|++.|+.++..+.=.-+
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqi---N~~-----------------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W  239 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQI---NRF-----------------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW  239 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccC---CCc-----------------chHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence            4565677889999999999999999   322                 12456788999999999999999887765555


Q ss_pred             HHhhCCCCchHHHH--HHHHHHHHHHhhchhhhhhhHHHHHHHHHH
Q 013549          311 EELFGSHHPKVGVV--LTCLALMFRNKAMQEHSSALLIQEGLYRRA  354 (441)
Q Consensus       311 e~~lG~~HP~va~~--l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rA  354 (441)
                      ..      .....+  +-..|..|-..+.|+.|      ++.|.+-
T Consensus       240 r~------s~mlasHNyWH~Al~~iE~aeye~a------leIyD~e  273 (491)
T KOG2610|consen  240 RQ------SWMLASHNYWHTALFHIEGAEYEKA------LEIYDRE  273 (491)
T ss_pred             hh------hhHHHhhhhHHHHHhhhcccchhHH------HHHHHHH
Confidence            42      222222  34456667666776665      6666654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.90  E-value=0.96  Score=36.41  Aligned_cols=71  Identities=15%  Similarity=0.036  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549           61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus        61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      +|-..+.-++-++.    +...++|+.+++++|...     ++.++--.++..|...|.+.|+|.+.++.-.+=+.+.++
T Consensus         5 ~ak~~ie~GlkLY~----~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~e   75 (80)
T PF10579_consen    5 QAKQQIEKGLKLYH----QNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEE   75 (80)
T ss_pred             HHHHHHHHHHHHhc----cchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555554444432    346889999999999866     456678888999999999999999998887766555543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.84  E-value=2.5  Score=41.97  Aligned_cols=145  Identities=20%  Similarity=0.306  Sum_probs=94.5

Q ss_pred             HHHHcCCHHHHHHHHHhhhh------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          201 VELAHGNLESAESFFKGLQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       201 ~~~~qG~y~eAe~l~~~aL~------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                      ++..+|+|++-...|.+.|.      +.+......+++-..-..-.+.+-=..+|+..|+...+.+.+            
T Consensus        74 I~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNe------------  141 (440)
T KOG1464|consen   74 INFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNE------------  141 (440)
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcc------------
Confidence            34579999999999999887      111111111222212223344555668899998886555441            


Q ss_pred             hhHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH----HHHHHHHHhhchhhhhhhHHHH
Q 013549          275 LEEVALA--ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT----CLALMFRNKAMQEHSSALLIQE  348 (441)
Q Consensus       275 ~~~~~~~--al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~----nLa~ly~~qG~~eeA~~~~~Ae  348 (441)
                          .+.  +-..||.+|.+.|.|.+-...+++--.-...-=|++...-++-|-    -=-.+|-.|.+-.+=      .
T Consensus       142 ----RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkL------K  211 (440)
T KOG1464|consen  142 ----RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKL------K  211 (440)
T ss_pred             ----eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHH------H
Confidence                122  124799999999999999999999888888888888776554333    223466666654432      6


Q ss_pred             HHHHHHHHHhhcCCCCCcchH
Q 013549          349 GLYRRALEFLKAPPLESEGVE  369 (441)
Q Consensus       349 ~ly~rAL~i~~~~~~~~~~~~  369 (441)
                      .+|++||.|-.+  ..||-+.
T Consensus       212 ~lYeqalhiKSA--IPHPlIm  230 (440)
T KOG1464|consen  212 ALYEQALHIKSA--IPHPLIM  230 (440)
T ss_pred             HHHHHHHHhhcc--CCchHHH
Confidence            799999999644  5677644

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.82  E-value=0.15  Score=31.84  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTR  305 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~r  305 (441)
                      +..+||.++..+|++++|+.++++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            467999999999999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.72  E-value=4.8  Score=41.56  Aligned_cols=167  Identities=12%  Similarity=0.003  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHHhhhcccc----CCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhH---------
Q 013549           80 ESYSQGMLVLEQCLSTQPS----DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV---------  146 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~----~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~---------  146 (441)
                      ..|+++...|.+++...--    .+=..||....+|..++.++..||++..|-++.+|||-..+..+...-         
T Consensus         8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~   87 (360)
T PF04910_consen    8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS   87 (360)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence            4788999999888874410    001468888999999999999999999999999999877775533211         


Q ss_pred             ----------------HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549          147 ----------------AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES  210 (441)
Q Consensus       147 ----------------~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e  210 (441)
                                      .++...+....+.|-+..|..++.-.+.+--..        +.+..+  ...-.+.+..++|+-
T Consensus        88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~--------DP~g~l--l~ID~~ALrs~~y~~  157 (360)
T PF04910_consen   88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE--------DPLGVL--LFIDYYALRSRQYQW  157 (360)
T ss_pred             CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--------CcchhH--HHHHHHHHhcCCHHH
Confidence                            012222222335555555555544333221110        111111  112223357888988


Q ss_pred             HHHHHHhhhh--cc---CCchHHHHHHHHHHHHccCh---------------HHHHHHHHHHHHHH
Q 013549          211 AESFFKGLQE--EE---GCTGSAALSYGEYLHATRNF---------------LLAKKFYQKVIEVL  256 (441)
Q Consensus       211 Ae~l~~~aL~--~~---~~~~~~a~~~a~~~~~qG~y---------------~eA~~ly~rAL~i~  256 (441)
                      =+.+++....  ..   ...++.+.+.+-.+...++-               ++|....++|+..+
T Consensus       158 Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  158 LIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            8888877665  11   13567888888888888877               89999999998763

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=92.52  E-value=2.6  Score=41.80  Aligned_cols=122  Identities=12%  Similarity=0.196  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH-ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH
Q 013549          206 GNLESAESFFKGLQEEEGCTGSAALSYGEYLHA-TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF  284 (441)
Q Consensus       206 G~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~-qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~  284 (441)
                      +..+.|-..|++|+....++..+...+|.+-+. .++.+.|..+|++++..+-..                    .....
T Consensus        15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--------------------~~~~~   74 (280)
T PF05843_consen   15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--------------------PDFWL   74 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---------------------HHHHH
T ss_pred             CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC--------------------HHHHH
Confidence            348999999999998666676777778888555 667777999999999874110                    11233


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          285 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      .....+...|+.+.|..+|++++..    ++.+. .......-....=...|+.+..      ..+++|+.+++
T Consensus        75 ~Y~~~l~~~~d~~~aR~lfer~i~~----l~~~~-~~~~iw~~~i~fE~~~Gdl~~v------~~v~~R~~~~~  137 (280)
T PF05843_consen   75 EYLDFLIKLNDINNARALFERAISS----LPKEK-QSKKIWKKFIEFESKYGDLESV------RKVEKRAEELF  137 (280)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHCCT----SSCHH-HCHHHHHHHHHHHHHHS-HHHH------HHHHHHHHHHT
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHh----cCchh-HHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHh
Confidence            4445667889999999999999865    22222 1223344444555555665543      66777777775

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.24  E-value=8.1  Score=43.89  Aligned_cols=64  Identities=14%  Similarity=0.109  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          192 SRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      ..++++.++....+|++++|..+++-.-...+....+...+-.+|..+|++++|..+|+|++.-
T Consensus        43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~  106 (932)
T KOG2053|consen   43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK  106 (932)
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            3566788999999999999996654332222223445566778999999999999999999865

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.22  E-value=2  Score=42.09  Aligned_cols=105  Identities=17%  Similarity=0.106  Sum_probs=73.9

Q ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          232 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA-----TFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       232 ~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a-----l~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      -|+-+..+|+|.||...|+.|+.+...-.- ...|  |    .|+.+.+..     +.|..+.+...|+|=++++.....
T Consensus       184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~l-kEkP--~----e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  184 EGNRLFKLGRYKEASSKYREAIICLRNLQL-KEKP--G----EPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhhhhhhhccHHHHHHHHHHHHHHHHHHHh-ccCC--C----ChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            366778999999999999999987542211 1111  2    144444442     469999999999999999988877


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      |.        .||.....|..-|.....-=+-+      +|+.-++++|+.
T Consensus       257 L~--------~~~~nvKA~frRakAhaa~Wn~~------eA~~D~~~vL~l  293 (329)
T KOG0545|consen  257 LR--------HHPGNVKAYFRRAKAHAAVWNEA------EAKADLQKVLEL  293 (329)
T ss_pred             Hh--------cCCchHHHHHHHHHHHHhhcCHH------HHHHHHHHHHhc
Confidence            74        68888888877776665443333      457788887765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.13  E-value=0.56  Score=49.85  Aligned_cols=89  Identities=12%  Similarity=0.013  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHhhhccccCCCCC----chh-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh
Q 013549           81 SYSQGMLVLEQCLSTQPSDGQLA----ESW-------------RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG  143 (441)
Q Consensus        81 ~y~eAl~~~eqaL~i~~~~~g~~----h~~-------------~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg  143 (441)
                      --.||+.+|+|+++.-+..+|.+    |.+             ..-+-..||...++.|+.+||+++++..++..+.  .
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~--~  292 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN--L  292 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc--c
Confidence            36799999999999888888754    211             1233457899999999999999999998765542  1


Q ss_pred             hhHHHHHHHHHHHHhcCCcchhHHHHHH
Q 013549          144 VRVAAMEALAGLYLQLGQDDTSSVVADK  171 (441)
Q Consensus       144 ~~~~al~~La~l~~~~G~~~~A~~l~~~  171 (441)
                      ......+||...+..++.|+++..+..+
T Consensus       293 ~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  293 DNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            1123568899999999999887766543

The molecular function of this protein is uncertain.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=91.60  E-value=1  Score=43.82  Aligned_cols=90  Identities=11%  Similarity=0.093  Sum_probs=70.7

Q ss_pred             HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549          204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT  283 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al  283 (441)
                      .-.+|+.|+..|.+++...+..+.--.|-+..+....+|+..+.--+|||++.   -.                 .+-..
T Consensus        22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~---~N-----------------~vk~h   81 (284)
T KOG4642|consen   22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD---PN-----------------LVKAH   81 (284)
T ss_pred             chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC---hH-----------------HHHHH
Confidence            45579999999999999655333223455667778999999999999999981   11                 23356


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      .-||+.......|++|++.+++|.......
T Consensus        82 ~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   82 YFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            789999999999999999999998877654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.21  E-value=0.24  Score=30.86  Aligned_cols=25  Identities=28%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHH
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      .+..++|.++..+|++++|+..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            4678999999999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.74  E-value=6.7  Score=41.94  Aligned_cols=112  Identities=13%  Similarity=0.155  Sum_probs=75.8

Q ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549          232 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       232 ~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e  311 (441)
                      =..+++.+|+|.+|..+..+. .|.++ .+       |  -..|+-.+-.+-||||-++..+|.|.-+..+|++||.-.-
T Consensus       246 Ksq~eY~~gn~~kA~KlL~~s-ni~~~-~g-------~--~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  246 KSQLEYAHGNHPKAMKLLLVS-NIHKE-AG-------G--TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             HHHHHHHhcchHHHHHHHHhc-ccccc-cC-------c--cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            366788899999999887653 33111 11       1  0112211111237999999999999999999999996333


Q ss_pred             HhhCCC-Cch---------HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          312 ELFGSH-HPK---------VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       312 ~~lG~~-HP~---------va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      ..+-.. .|.         --..+.|.|..|-.-||.-.|      -..|.+|...+..
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~A------fqCf~~av~vfh~  367 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLA------FQCFQKAVHVFHR  367 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHH------HHHHHHHHHHHhc
Confidence            332222 222         124688999999999998776      7888899888754

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.59  E-value=3.4  Score=40.54  Aligned_cols=117  Identities=16%  Similarity=0.024  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549          107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT  186 (441)
Q Consensus       107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~  186 (441)
                      ...++..-|+-++.+|+|.||+..|+.|+...+..           ..     -                ++-++..|-+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L-----------~l-----k----------------EkP~e~eW~e  224 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNL-----------QL-----K----------------EKPGEPEWLE  224 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH-----------Hh-----c----------------cCCCChHHHH
Confidence            34567888899999999999999999885443221           00     0                0111101111


Q ss_pred             hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      -+..+.-...+..-.++..|+|=++++....+|..++...-+.+.-|...-.--+.+||+.-++++|+.
T Consensus       225 Ldk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  225 LDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             HHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            000000000111223457899999999999999977666566666677777778899999999999987

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.76  E-value=1.2  Score=35.81  Aligned_cols=62  Identities=18%  Similarity=0.139  Sum_probs=48.8

Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG  315 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG  315 (441)
                      +.+-+..+|+...++||....   .     .       ++  ...++..|.++|.+.|+|.+...+-.+=++|.++.=.
T Consensus        17 Y~~~~~~~Al~~W~~aL~k~~---~-----~-------~~--rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled   78 (80)
T PF10579_consen   17 YHQNETQQALQKWRKALEKIT---D-----R-------ED--RFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED   78 (80)
T ss_pred             hccchHHHHHHHHHHHHhhcC---C-----h-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            367788899999999998731   1     0       11  4557889999999999999999999999999887533

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.39  E-value=25  Score=35.11  Aligned_cols=200  Identities=18%  Similarity=0.181  Sum_probs=123.8

Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------Hhhhhhhh------h---h-HHHHHHHHHHHHh
Q 013549           96 QPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE-------NFKNSILG------V---R-VAAMEALAGLYLQ  158 (441)
Q Consensus        96 ~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral-------~i~~~~lg------~---~-~~al~~La~l~~~  158 (441)
                      +...-|.-=|--.+.++..  +....|.-.+.+..+...+       .+.+....      .   + ....+.+++++.-
T Consensus       112 yp~rrGSmVPFsmR~lhAe--~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG  189 (366)
T KOG2796|consen  112 YPGRRGSMVPFSMRILHAE--LQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLG  189 (366)
T ss_pred             CCCCcCccccHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333444445555555544  3445676666665544332       22221111      1   1 1245667888888


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----ccCCc-hHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-----EEGCT-GSAALSY  232 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~~~~~-~~~a~~~  232 (441)
                      +++|.-+...+.+..+   +..+..    +.+.    .-+|.+...-|+.+-|+..|+++-+     .+.+. ..+.-+.
T Consensus       190 ~kEy~iS~d~~~~vi~---~~~e~~----p~L~----s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIK---YYPEQE----PQLL----SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             chhhhhhHHHHHHHHH---hCCccc----HHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            8888888877776653   221211    1221    1235555678999999999997765     11111 2334566


Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      +.+|--+.+|.+|--.|-+.+..        |+.            +..+.||=|..+...|+..+|.+-.++++.+   
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~--------D~~------------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~---  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRM--------DPR------------NAVANNNKALCLLYLGKLKDALKQLEAMVQQ---  315 (366)
T ss_pred             hhheecccchHHHHHHHhhcccc--------CCC------------chhhhchHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence            77888899999998888876644        111            2345678888888899999999999988876   


Q ss_pred             hhCCCCchHHHHHHHHHHHHH
Q 013549          313 LFGSHHPKVGVVLTCLALMFR  333 (441)
Q Consensus       313 ~lG~~HP~va~~l~nLa~ly~  333 (441)
                        -|.|-.+-+.+.||-.+|.
T Consensus       316 --~P~~~l~es~~~nL~tmyE  334 (366)
T KOG2796|consen  316 --DPRHYLHESVLFNLTTMYE  334 (366)
T ss_pred             --CCccchhhhHHHHHHHHHH
Confidence              3566666677778877774

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.92  E-value=41  Score=37.09  Aligned_cols=313  Identities=14%  Similarity=0.070  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      |.....||.++..   ...++++|+..++|+..+-.+ .+-.+ -.-.+-.-++.+|..++... |.....+.+...+..
T Consensus        59 a~~~l~la~iL~~---eT~n~~~Ae~~L~k~~~l~~~-~~~~d-~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~  132 (608)
T PF10345_consen   59 ARVRLRLASILLE---ETENLDLAETYLEKAILLCER-HRLTD-LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY  132 (608)
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccc-cchHH-HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence            4445668888743   345799999999999987765 22111 12344445589999999888 999999988777651


Q ss_pred             hhhh-HHHHHHHH--HHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549          142 LGVR-VAAMEALA--GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL  218 (441)
Q Consensus       142 lg~~-~~al~~La--~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a  218 (441)
                       +.. ..-...+.  .++...+++..|...++....+....++      ..+...+....+++.+..|..+++.+..+++
T Consensus       133 -~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d------~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~  205 (608)
T PF10345_consen  133 -GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD------PAVFVLASLSEALLHLRRGSPDDVLELLQRA  205 (608)
T ss_pred             -CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence             111 11222222  2333336777788877777666654332      1222333345677788899999999999988


Q ss_pred             hh---c-----cCCch--HHHHHHHH--HHHHccChHHHHHHHHHHHHHHHhhcccC-----CCC---------------
Q 013549          219 QE---E-----EGCTG--SAALSYGE--YLHATRNFLLAKKFYQKVIEVLAEQKDFS-----DMN---------------  266 (441)
Q Consensus       219 L~---~-----~~~~~--~~a~~~a~--~~~~qG~y~eA~~ly~rAL~i~~~~~~~~-----~~~---------------  266 (441)
                      ..   .     ..+.+  .+..-+-.  .+-.+|++..+.+..++-=..+.+.+...     +++               
T Consensus       206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~  285 (608)
T PF10345_consen  206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG  285 (608)
T ss_pred             HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence            66   1     11111  12222222  34467888888877665544433333311     000               


Q ss_pred             --CccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH------------------HHHH
Q 013549          267 --TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG------------------VVLT  326 (441)
Q Consensus       267 --~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va------------------~~l~  326 (441)
                        .+.-.-+.-++..+-.+.-=|..+...|..++|++++.++|...++..+...+...                  .++.
T Consensus       286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~  365 (608)
T PF10345_consen  286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF  365 (608)
T ss_pred             CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH
Confidence              00000011122222222222666777788889999999999999999832222111                  1333


Q ss_pred             HHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCC-CcchHhh-hccHHHHHHHhccHHHHHHHhh
Q 013549          327 CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLE-SEGVETK-VDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       327 nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~-~~~~~~~-l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      .++....-.|++.++      ..............+.. .+..... .--.|+.+...|+.+.|+..+.
T Consensus       366 y~~~~~~~~~~~~~a------~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  366 YQIWCNFIRGDWSKA------TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHCcCHHHH------HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            445556666776654      55666555554332221 1111112 2235666778889998988774

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=88.89  E-value=1.2  Score=43.20  Aligned_cols=60  Identities=18%  Similarity=0.081  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhhhhh
Q 013549           82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~~~~  141 (441)
                      -++|...|++|+.+..+.+++.||-......|.+.+|++ .|+.++|+++.++|++-+-+.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~  202 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            478999999999999998999999999999999999866 899999999999986655443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=88.43  E-value=6.5  Score=38.93  Aligned_cols=130  Identities=8%  Similarity=0.050  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHHHhcCCCcchhhhh
Q 013549          111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDT-SSVVADKCLQLCEKHKPENYKTYGA  189 (441)
Q Consensus       111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~-A~~l~~~~L~i~~~~~~~~~~~~~~  189 (441)
                      +..+.....+.+..+.|...|++|+.-...  ...  .+-..|.+.+..+++.+ |..++++.++.+....       .-
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~--vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~-------~~   72 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYH--VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP-------DF   72 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---TH--HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-------HH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-------HH
Confidence            444556666667799999999999633221  122  33444555455455555 8888888876553322       11


Q ss_pred             hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---chHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549          190 VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC---TGSAALSYGEYLHATRNFLLAKKFYQKVIEVL  256 (441)
Q Consensus       190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~  256 (441)
                      +..+   +  -..+..|+.+.|..+|++++..-+.   ...+...+...-...|+.+....+++|+.+.+
T Consensus        73 ~~~Y---~--~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   73 WLEY---L--DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             HHHH---H--HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             HHHH---H--HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            2111   1  1124789999999999999993222   23345667777788999999999999999884

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.40  E-value=14  Score=36.75  Aligned_cols=150  Identities=14%  Similarity=0.066  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhhccccCCC--CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013549           84 QGMLVLEQCLSTQPSDGQ--LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ  161 (441)
Q Consensus        84 eAl~~~eqaL~i~~~~~g--~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~  161 (441)
                      .-....+..|.++...+.  .....++.++..++.+.+.+|+|+-|...+.++.......-.........-+-+.+..|+
T Consensus       120 ~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~  199 (352)
T PF02259_consen  120 DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE  199 (352)
T ss_pred             cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC
Confidence            345566666666665554  224468999999999999999999999999988664421100011122334566778898


Q ss_pred             cchhHHHHHHHHH-HHHhcC-CCc------------------chhh--hhhHhHHHHHHHHHHHHc------CCHHHHHH
Q 013549          162 DDTSSVVADKCLQ-LCEKHK-PEN------------------YKTY--GAVNSRANAVKGLVELAH------GNLESAES  213 (441)
Q Consensus       162 ~~~A~~l~~~~L~-i~~~~~-~~~------------------~~~~--~~l~~~a~al~gl~~~~q------G~y~eAe~  213 (441)
                      ..+|....+..+. ...... ...                  ....  .....++....|.....+      ++++++..
T Consensus       200 ~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~  279 (352)
T PF02259_consen  200 QEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILK  279 (352)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence            8888877777765 222221 000                  0001  111112222233333345      88899999


Q ss_pred             HHHhhhhccCCchHHHHHHH
Q 013549          214 FFKGLQEEEGCTGSAALSYG  233 (441)
Q Consensus       214 l~~~aL~~~~~~~~~a~~~a  233 (441)
                      .|+++....+....+...+|
T Consensus       280 ~~~~a~~~~~~~~k~~~~~a  299 (352)
T PF02259_consen  280 YYKEATKLDPSWEKAWHSWA  299 (352)
T ss_pred             HHHHHHHhChhHHHHHHHHH
Confidence            99999885444444444444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.19  E-value=9.9  Score=40.76  Aligned_cols=159  Identities=13%  Similarity=0.013  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhhcccc--CC--CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           84 QGMLVLEQCLSTQPS--DG--QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        84 eAl~~~eqaL~i~~~--~~--g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      |.+.+|.--|+.+.-  -+  ..|+-.-+.   .+-.--++.-+...-++.-++||++.+..-    .++.-|+.=  .-
T Consensus       143 epLTyYDMNLSAQDHQtfFtcd~D~~r~Aq---~IMq~AWRERnp~aRIkaA~eALei~pdCA----dAYILLAEE--eA  213 (539)
T PF04184_consen  143 EPLTYYDMNLSAQDHQTFFTCDTDALRPAQ---EIMQKAWRERNPQARIKAAKEALEINPDCA----DAYILLAEE--EA  213 (539)
T ss_pred             CCcccccCCccccccceeEecCCCccCHHH---HHHHHHHhcCCHHHHHHHHHHHHHhhhhhh----HHHhhcccc--cc
Confidence            566666666654311  11  123322232   334445778888888888889988876541    112111110  01


Q ss_pred             CCcchhHHHHHHHHHHHHhcCCCcc---------hh----hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--C
Q 013549          160 GQDDTSSVVADKCLQLCEKHKPENY---------KT----YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG--C  224 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~~~~---------~~----~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~--~  224 (441)
                      -...+++.+++++++..+.......         +.    ......+++.-.++.....|+.+||.++|+..++..+  .
T Consensus       214 ~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~  293 (539)
T PF04184_consen  214 STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD  293 (539)
T ss_pred             cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc
Confidence            1246788888888877654442110         00    0011122232345555689999999999999998433  3


Q ss_pred             chHHHHHHHHHHHHccChHHHHHHHHH
Q 013549          225 TGSAALSYGEYLHATRNFLLAKKFYQK  251 (441)
Q Consensus       225 ~~~~a~~~a~~~~~qG~y~eA~~ly~r  251 (441)
                      +.++..++-+.+-.+++|.++..+..|
T Consensus       294 ~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  294 NLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            456677888899999999999988777

The molecular function of this protein is uncertain.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=88.18  E-value=2.3  Score=41.24  Aligned_cols=63  Identities=14%  Similarity=0.129  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH-HHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          296 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly-~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      -++|...|++|+.+.++.+.|.||--....-|.+..| .-.|+.++|  +..|..-|..|+.-+..
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A--~~ia~~afd~a~~~l~~  205 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKA--IEIAKQAFDEAISELDT  205 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHH--HHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHH--HHHHHHHHHHHHhhhcc
Confidence            3679999999999999999999999887777777766 558888887  45566666666665543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.87  E-value=3.3  Score=42.79  Aligned_cols=109  Identities=21%  Similarity=0.226  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHH------------HHHHHHHHHhhchhhhhhhHHH
Q 013549          280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL------------TCLALMFRNKAMQEHSSALLIQ  347 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l------------~nLa~ly~~qG~~eeA~~~~~A  347 (441)
                      +.++.-++.++..||+++.|-++.+|||-++++.+.+.=+......            .|- .+|..--+|-.+   ..-
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR-~fflal~r~i~~---L~~  115 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR-QFFLALFRYIQS---LGR  115 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch-HHHHHHHHHHHH---HHh
Confidence            5689999999999999999999999999999987654332101000            010 122222222221   122


Q ss_pred             HHHHHHHHHHhhcC-CCCCc-chHhhhccHHHHHHHhccHHHHHHHh
Q 013549          348 EGLYRRALEFLKAP-PLESE-GVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       348 e~ly~rAL~i~~~~-~~~~~-~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      .+.++.|+++.|-. ..|.. |..-++--++...+..++|+-.+...
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~  162 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFS  162 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHH
Confidence            67899999998842 23332 43345555666666667777666654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.68  E-value=1  Score=31.10  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL  142 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l  142 (441)
                      |.++..||.+-...++|.+|++-|++++.|.++.+
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~   35 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELL   35 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            45788999999999999999999999998887653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.50  E-value=4.5  Score=42.15  Aligned_cols=127  Identities=13%  Similarity=0.082  Sum_probs=85.9

Q ss_pred             HHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhH
Q 013549           87 LVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSS  166 (441)
Q Consensus        87 ~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~  166 (441)
                      .-++.-|+.....++.+  ++=+.+..+|.-|.+-|+.+.|+..|-|+-+-+.+. +.....+-|+.-+-+.+|++..-.
T Consensus       131 e~L~~eLk~yK~n~iKE--siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-khvInm~ln~i~VSI~~~nw~hv~  207 (466)
T KOG0686|consen  131 EKLDNELKSYKDNLIKE--SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-KHVINMCLNLILVSIYMGNWGHVL  207 (466)
T ss_pred             HHHHHHHHHhhcchhhH--HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-HHHHHHHHHHHHHHHhhcchhhhh
Confidence            34455566665555444  688899999999999999999999999987777664 333344455556656678876665


Q ss_pred             HHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 013549          167 VVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE  220 (441)
Q Consensus       167 ~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~  220 (441)
                      .+..++-..... . .  .-...+..+.....|++.+..++|.+|..+|-.+..
T Consensus       208 sy~~~A~st~~~-~-~--~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~  257 (466)
T KOG0686|consen  208 SYISKAESTPDA-N-E--NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEF  257 (466)
T ss_pred             hHHHHHHhCchh-h-h--hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            555555322100 0 0  001233345566789999999999999999988766

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.45  E-value=12  Score=35.47  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=52.9

Q ss_pred             HcCCHHHHHHHHHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          204 AHGNLESAESFFKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      .+-.=++|..-|.+.=. ..-.++..-..+|..|. .-+-++|+.+|-+||+..   ..  + +     +.+|     ..
T Consensus       118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~---~~--~-~-----~~n~-----ei  180 (203)
T PF11207_consen  118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS---NP--D-D-----NFNP-----EI  180 (203)
T ss_pred             hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc---CC--C-C-----CCCH-----HH
Confidence            45445677776666544 22233444556665554 778999999999999993   32  1 0     1122     34


Q ss_pred             HHHHHHHHHHcCCHHHH
Q 013549          283 TFALGQLEAHMGNFGDA  299 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eA  299 (441)
                      +..|+.+|+.+|+|++|
T Consensus       181 l~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  181 LKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHhcchhhh
Confidence            68999999999999987

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=87.36  E-value=7.5  Score=46.43  Aligned_cols=241  Identities=17%  Similarity=0.154  Sum_probs=145.2

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh----
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK----  178 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~----  178 (441)
                      ..++..-.+|+++---|+|.+|+..|..|+.+.+.. ++-   ..+++.++.+..-++-...-......+-.+...    
T Consensus       240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~-~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~  318 (1185)
T PF08626_consen  240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS-NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST  318 (1185)
T ss_pred             hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc-CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence            578888899999999999999999999999888764 332   346676654422222111000000001000000    


Q ss_pred             --cCCCc--------chhhhhhHh---HHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCc-----hHHHHHHHHHHHHc
Q 013549          179 --HKPEN--------YKTYGAVNS---RANAVKGLVELAHGNLESAESFFKGLQE-EEGCT-----GSAALSYGEYLHAT  239 (441)
Q Consensus       179 --~~~~~--------~~~~~~l~~---~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~-----~~~a~~~a~~~~~q  239 (441)
                        ..+..        +........   .-..+..+...-.-.+++|..+|.++.. .....     ..+...++.++..+
T Consensus       319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~  398 (1185)
T PF08626_consen  319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ  398 (1185)
T ss_pred             CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence              00000        000000000   0000112222335568999999999986 11112     24456677777777


Q ss_pred             c--------------------ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549          240 R--------------------NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA  299 (441)
Q Consensus       240 G--------------------~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA  299 (441)
                      .                    .-.++-.+..||+.+.   ..     .+.     +. ..+..+..||.+|...|=.-++
T Consensus       399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~---l~-----~l~-----~~-dqi~i~~~lA~vy~~lG~~RK~  464 (1185)
T PF08626_consen  399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQ---LK-----DLS-----VE-DQIRIYSGLASVYGSLGFHRKK  464 (1185)
T ss_pred             hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhh---hh-----hCC-----HH-HHHHHHHHHHHHHHhcchhHHH
Confidence            7                    7888999999999883   22     121     22 2456788999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh----h-----h-hhHHHHHHHHHHHHHhhcC
Q 013549          300 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH----S-----S-ALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       300 e~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee----A-----~-~~~~Ae~ly~rAL~i~~~~  361 (441)
                      --+.+.++...-..+...|+++...|..+..+|.-....++    +     . +...+..+.+.++.+.++.
T Consensus       465 AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l  536 (1185)
T PF08626_consen  465 AFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEAL  536 (1185)
T ss_pred             HHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhc
Confidence            99999999888776755567777777777777765322211    0     1 3455677888888887764

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=87.28  E-value=5.7  Score=34.85  Aligned_cols=89  Identities=13%  Similarity=0.023  Sum_probs=59.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-------HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-------GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-------a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                      .++|......+++-.+.-+|++||.+-++.--.+.-++       ..+..|||..|+.+|+.+=.      ..+.+=|-+
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yE------LkYLqlASE   78 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYE------LKYLQLASE   78 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHH------HHHHHHHHH
Confidence            47888888999999999999999999999843333332       35789999999999986543      444554544


Q ss_pred             HhhcCCCCCcc--hHhhhccHHHH
Q 013549          357 FLKAPPLESEG--VETKVDRTDIV  378 (441)
Q Consensus       357 i~~~~~~~~~~--~~~~l~nl~~~  378 (441)
                      -.-+..|.=|.  .-.-+++++.+
T Consensus        79 ~VltLiPQCp~~~C~afi~sLGCC  102 (140)
T PF10952_consen   79 KVLTLIPQCPNTECEAFIDSLGCC  102 (140)
T ss_pred             HHHHhccCCCCcchHHHHHhhhcc
Confidence            43333443332  23334444443

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=86.95  E-value=33  Score=33.71  Aligned_cols=215  Identities=17%  Similarity=0.105  Sum_probs=0.0

Q ss_pred             HcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHH
Q 013549          120 ESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKG  199 (441)
Q Consensus       120 ~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~g  199 (441)
                      .+++|++|++++.....+.-++                  |++..+.++..-.++++++......++...-      +..
T Consensus         2 ~~kky~eAidLL~~Ga~~ll~~------------------~Q~~sg~DL~~lliev~~~~~~~~~~~~~~r------l~~   57 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSGALILLKH------------------GQYGSGADLALLLIEVYEKSEDPVDEESIAR------LIE   57 (260)
T ss_dssp             HTT-HHHHHHHHHHHHHHHHHT------------------T-HHHHHHHHHHHHHHHHHTT---SHHHHHH------HHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHC------------------CCcchHHHHHHHHHHHHHHcCCCCCHHHHHH------HHH


Q ss_pred             HHHHHcCCHHHHHHHHHhhhh------ccCCchHHHHHHHHHHHHccChHHHHHHHHHH--------HHHHHhhcccCCC
Q 013549          200 LVELAHGNLESAESFFKGLQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKV--------IEVLAEQKDFSDM  265 (441)
Q Consensus       200 l~~~~qG~y~eAe~l~~~aL~------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rA--------L~i~~~~~~~~~~  265 (441)
                      ++...-..-.+=.++..++++      ...-++....-+|..|..-|+|.+|+.++-..        ............+
T Consensus        58 l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~  137 (260)
T PF04190_consen   58 LISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYP  137 (260)
T ss_dssp             HHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCC


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHH---------HHHHHHHHHHHhh
Q 013549          266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV---------VLTCLALMFRNKA  336 (441)
Q Consensus       266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~---------~l~nLa~ly~~qG  336 (441)
                      +..+           -.+.-.=.-|...|+...|...+..-++..-+.    ||.+..         .+-|...+.-..=
T Consensus       138 ~e~d-----------lfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~----~p~~~~~~~~~~~~~PllnF~~lLl~t~  202 (260)
T PF04190_consen  138 SEAD-----------LFIARAVLQYLCLGNLRDANELFDTFTSKLIES----HPKLENSDIEYPPSYPLLNFLQLLLLTC  202 (260)
T ss_dssp             --HH-----------HHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH-------EEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred             cchh-----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc----CcchhccccCCCCCCchHHHHHHHHHHH


Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHH
Q 013549          337 MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL  380 (441)
Q Consensus       337 ~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~  380 (441)
                      +.+.+       ++|..-.+-++......|....-++-++.+|.
T Consensus       203 e~~~~-------~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yF  239 (260)
T PF04190_consen  203 ERDNL-------PLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYF  239 (260)
T ss_dssp             HHT-H-------HHHHHHHHHTHH---HHHHTHHHHHHHHHHHH
T ss_pred             hcCcH-------HHHHHHHHHhCccccccHHHHHHHHHHHHHHC

; PDB: 3LKU_E 2WPV_G.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.51  E-value=2.1  Score=45.57  Aligned_cols=109  Identities=16%  Similarity=0.123  Sum_probs=73.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhh-ccC---Cch----HHH-HHHHHHHHHccChHHHHHHHHHHHHHHHhhc--ccCCCCC
Q 013549          199 GLVELAHGNLESAESFFKGLQE-EEG---CTG----SAA-LSYGEYLHATRNFLLAKKFYQKVIEVLAEQK--DFSDMNT  267 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~-~~~---~~~----~~a-~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~--~~~~~~~  267 (441)
                      .-.++..|+|..|.+++..+=. .++   -++    -.. +|+|-++...|.|.-+.-+|++||.-.+...  ++.+.+.
T Consensus       247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            3445578999999888876533 111   122    112 6788899999999999999999996323222  2112221


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549          268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e  311 (441)
                      +.   ++.. -..-.++|.|.+|.+.|+.-.|-++|.+|...|.
T Consensus       327 ~t---ls~n-ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  327 FT---LSQN-KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             ee---hhcc-cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            11   1100 0122478999999999999999999999998875

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=86.12  E-value=3.7  Score=40.07  Aligned_cols=105  Identities=10%  Similarity=0.041  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      ..|.++..-+--+  |  -.-+|+.|+..|-+++.+        .|.++.-+.|-+..|...-+|+..++-..+++.+.+
T Consensus         8 ~~a~qlkE~gnk~--f--~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~   75 (284)
T KOG4642|consen    8 ESAEQLKEQGNKC--F--IPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP   75 (284)
T ss_pred             hHHHHHHhccccc--c--chhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh
Confidence            3344444444444  2  134699999999999964        466788899999999999999999999999988865


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Q 013549          140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK  180 (441)
Q Consensus       140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~  180 (441)
                      ..    +....-|+....+...|+++...++++.++...+.
T Consensus        76 N~----vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   76 NL----VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             HH----HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            53    34556677778888999999999999998887665

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=85.70  E-value=1.5  Score=36.06  Aligned_cols=53  Identities=26%  Similarity=0.352  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhhCCCCchHHHHHHHHHHHH
Q 013549          280 LAATFALGQLEAHMGNFGDAEEILTRTLTK---------------TEELFGSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i---------------~e~~lG~~HP~va~~l~nLa~ly  332 (441)
                      +.+...||..+...|+|++|.+.+.+.+..               .=+.+|+.||-|...-..|+++.
T Consensus        22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL   89 (90)
T PF14561_consen   22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL   89 (90)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence            357889999999999999999988665532               22468999999988888877764

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=85.42  E-value=5.6  Score=34.91  Aligned_cols=62  Identities=13%  Similarity=0.171  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh-----------hhhHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 013549          111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSIL-----------GVRVAAMEALAGLYLQLGQDDTSSVVADKC  172 (441)
Q Consensus       111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l-----------g~~~~al~~La~l~~~~G~~~~A~~l~~~~  172 (441)
                      +..+|......+++-.++-+||+|+.+.+...           -+.+.+..||+..+..+|+.+-.+.|.+-+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA   76 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA   76 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence            56788889999999999999999998877541           124678899999999999987777766544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=84.03  E-value=44  Score=32.58  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=93.9

Q ss_pred             HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 013549           63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~----qG~y~eA~e~~~ral~i~  138 (441)
                      ....+++..|........++.+|+.+|+++..          ........+||..|..    ..++.+|...|+++-...
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g  143 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG  143 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence            45666777664333344458899999996653          2345568889999877    448999999999985543


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCC--------cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH----cC
Q 013549          139 NSILGVRVAAMEALAGLYLQLGQ--------DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA----HG  206 (441)
Q Consensus       139 ~~~lg~~~~al~~La~l~~~~G~--------~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~----qG  206 (441)
                      ... +  ..+...++..|.. |.        ...|..++.++-..              ....+....|..|..    --
T Consensus       144 ~~~-a--~~~~~~l~~~~~~-g~~~~~~~~~~~~A~~~~~~aa~~--------------~~~~a~~~lg~~y~~G~Gv~~  205 (292)
T COG0790         144 NVE-A--ALAMYRLGLAYLS-GLQALAVAYDDKKALYLYRKAAEL--------------GNPDAQLLLGRMYEKGLGVPR  205 (292)
T ss_pred             Chh-H--HHHHHHHHHHHHc-ChhhhcccHHHHhHHHHHHHHHHh--------------cCHHHHHHHHHHHHcCCCCCc
Confidence            221 1  1124455555433 32        11233333332110              011222334544422    23


Q ss_pred             CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc---------------ChHHHHHHHHHHHHH
Q 013549          207 NLESAESFFKGLQEEEGCTGSAALSYGEYLHATR---------------NFLLAKKFYQKVIEV  255 (441)
Q Consensus       207 ~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG---------------~y~eA~~ly~rAL~i  255 (441)
                      ++.+|..+|.++-+..+  ......++ ++...|               +...|..+|.++-..
T Consensus       206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence            78999999999988443  45556666 555555               566666666665543

>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5

Probab=84.00  E-value=1.5  Score=40.82  Aligned_cols=51  Identities=24%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             HhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh-hcCCCCCcch
Q 013549          312 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLESEGV  368 (441)
Q Consensus       312 ~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~-~~~~~~~~~~  368 (441)
                      ..-|.+.|.-..+|.||-.-|.+||+|+-|      .++.++||+-+ +..+.+||++
T Consensus       130 ~~~~~E~~~rl~tL~nlv~q~~~q~r~eva------v~~~KqalEdl~~~~~~~~~~v  181 (181)
T PF09311_consen  130 QSQGYEIPARLRTLHNLVIQYESQGRYEVA------VPLCKQALEDLEKESGHKHPDV  181 (181)
T ss_dssp             --S-TTS-HHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHHH-SSSHHH
T ss_pred             HhccccchHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHhhhcccCC
Confidence            456789999999999999999999999865      89999999998 4557788864

This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.03  E-value=4.3  Score=32.34  Aligned_cols=31  Identities=19%  Similarity=0.242  Sum_probs=24.7

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Q 013549          292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL  325 (441)
Q Consensus       292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l  325 (441)
                      ..|+|++|.++|.+||+.+..   ...|..-.++
T Consensus        18 ~~gny~eA~~lY~~ale~~~~---ekn~~~k~~i   48 (75)
T cd02680          18 EKGNAEEAIELYTEAVELCIN---TSNETMDQAL   48 (75)
T ss_pred             HhhhHHHHHHHHHHHHHHHHH---hcChhhHHHH
Confidence            459999999999999999998   4566655444

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=82.87  E-value=2.8  Score=42.35  Aligned_cols=53  Identities=17%  Similarity=0.295  Sum_probs=48.7

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      ..+|+.|+|..+|+.|++-.+.++.+...+|.+...-.+.-+|..+|-|||.|
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            37999999999999999987888889999998888788999999999999998

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=82.39  E-value=57  Score=32.88  Aligned_cols=27  Identities=22%  Similarity=0.075  Sum_probs=15.1

Q ss_pred             CCchHHHHHHHHHHHHccChHHHHHHH
Q 013549          223 GCTGSAALSYGEYLHATRNFLLAKKFY  249 (441)
Q Consensus       223 ~~~~~~a~~~a~~~~~qG~y~eA~~ly  249 (441)
                      +...++++.+|..++.+|++++|.+.+
T Consensus       233 Pdd~~aa~~lA~~~~~~g~~e~Ale~L  259 (304)
T COG3118         233 PDDVEAALALADQLHLVGRNEAALEHL  259 (304)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            334455555666666666666665544

>smart00101 14_3_3 14-3-3 homologues

Probab=82.24  E-value=4.6  Score=39.47  Aligned_cols=57  Identities=11%  Similarity=0.001  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhh
Q 013549           82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES-GNYVEAIEKLQKVENFK  138 (441)
Q Consensus        82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~q-G~y~eA~e~~~ral~i~  138 (441)
                      -++|...|++|+++..+.+.+.||-......|.+.+|++. ++-++|+++-++|++-+
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4589999999999988889999999999999999998875 99999999998885544

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=82.19  E-value=28  Score=35.53  Aligned_cols=126  Identities=17%  Similarity=0.186  Sum_probs=83.9

Q ss_pred             HHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHH---HHHHHHhcCC
Q 013549           85 GMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEA---LAGLYLQLGQ  161 (441)
Q Consensus        85 Al~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~---La~l~~~~G~  161 (441)
                      =+.-++...+-.+..+|+.  .+...+.+.|..|++.|+-+.|++.+.+...-.-+ +|.+......   |+-.|   ++
T Consensus        83 ki~eld~~iedaeenlGE~--ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs-~g~kiDVvf~~iRlglfy---~D  156 (393)
T KOG0687|consen   83 KIKELDEKIEDAEENLGES--EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS-LGHKIDVVFYKIRLGLFY---LD  156 (393)
T ss_pred             HHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh-cccchhhHHHHHHHHHhh---cc
Confidence            3444555555555555544  58899999999999999999999999887544333 3443333333   33334   44


Q ss_pred             cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Q 013549          162 DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE  222 (441)
Q Consensus       162 ~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~  222 (441)
                      .+--....+++-.+.++.+  +|+    ...|.+.-.|+...+..+|.+|-.+|-.++.+.
T Consensus       157 ~~lV~~~iekak~liE~Gg--DWe----RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  157 HDLVTESIEKAKSLIEEGG--DWE----RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCC--Chh----hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence            4444555666666676666  353    234455567888888999999999999999843

>smart00101 14_3_3 14-3-3 homologues

Probab=81.82  E-value=6.5  Score=38.45  Aligned_cols=64  Identities=6%  Similarity=0.000  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH-HhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          296 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR-NKAMQEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~-~qG~~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                      -++|.+.|++|+++.++.+.|.||--....-|.+..|. -+++.++|  ...|..-|..|+.-+...
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A--~~lAk~afd~Ai~~ld~l  208 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRA--CNLAKQAFDEAIAELDTL  208 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhcc
Confidence            35899999999999999999999998877777766555 45888877  445666677776665543

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.73  E-value=15  Score=29.24  Aligned_cols=50  Identities=10%  Similarity=0.050  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHH
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~l-G~~HP~va~~l~nLa~ly  332 (441)
                      +..-|.-.-..|+|++|..+|.+||+.+...+ +...|.....+..--.-|
T Consensus         9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY   59 (77)
T cd02683           9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEY   59 (77)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            44556667778999999999999999999975 666666666655444444

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=81.36  E-value=1.9  Score=46.72  Aligned_cols=105  Identities=17%  Similarity=0.127  Sum_probs=78.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCch-HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          199 GLVELAHGNLESAESFFKGLQEEEGCTG-SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~~~~~~-~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      |++...+|+-..|..++++|+...+... ....++|+++...|-...|-.+..++|+|.    -  .++           
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~----~--sep-----------  676 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN----S--SEP-----------  676 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc----c--cCc-----------
Confidence            4444569999999999999998433222 235678888888888999999999999993    1  111           


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCL  328 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nL  328 (441)
                         -+...+|..|..+.+.+.|.+.|++|++.     .++.|..-..|--+
T Consensus       677 ---l~~~~~g~~~l~l~~i~~a~~~~~~a~~~-----~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  677 ---LTFLSLGNAYLALKNISGALEAFRQALKL-----TTKCPECENSLKLI  719 (886)
T ss_pred             ---hHHHhcchhHHHHhhhHHHHHHHHHHHhc-----CCCChhhHHHHHHH
Confidence               13468899999999999999999999974     46666666555533

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=81.15  E-value=9.3  Score=39.02  Aligned_cols=102  Identities=14%  Similarity=0.075  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESW-RGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~-~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      +|...-.=+.-|.++    -+|..|+..|..+|...     ...|+ -+.+|+|.|......|+|..|+.-..+++.+.+
T Consensus        80 ~Aen~KeeGN~~fK~----Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P  150 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKE----KRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP  150 (390)
T ss_pred             HHHHHHHHhHHHHHh----hhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            444444445555332    26999999999999754     33444 577899999999999999999999999999988


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 013549          140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL  175 (441)
Q Consensus       140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i  175 (441)
                      .++...    ..=+-++.++.+.++|..+++..+.+
T Consensus       151 ~h~Ka~----~R~Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  151 THLKAY----IRGAKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             chhhhh----hhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence            775432    22223344445566666666665544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=80.59  E-value=2.4  Score=46.04  Aligned_cols=96  Identities=19%  Similarity=0.187  Sum_probs=72.7

Q ss_pred             HHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh
Q 013549           66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR  145 (441)
Q Consensus        66 ~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~  145 (441)
                      .|+|-+|||   .+|+-..|+.++..|+-..     |..  --..+-|||.++..-|-..+|-.++.+++.+..+..   
T Consensus       610 ln~aglywr---~~gn~~~a~~cl~~a~~~~-----p~~--~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep---  676 (886)
T KOG4507|consen  610 LNEAGLYWR---AVGNSTFAIACLQRALNLA-----PLQ--QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP---  676 (886)
T ss_pred             eecccceee---ecCCcHHHHHHHHHHhccC-----hhh--hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc---
Confidence            477889998   6899999999999999644     222  234588999999999999999999999988874431   


Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 013549          146 VAAMEALAGLYLQLGQDDTSSVVADKCLQL  175 (441)
Q Consensus       146 ~~al~~La~l~~~~G~~~~A~~l~~~~L~i  175 (441)
                       -....++..|..+++.+.|...+..+++.
T Consensus       677 -l~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  677 -LTFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             -hHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence             13345666777777887777777777644

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.44  E-value=16  Score=28.86  Aligned_cols=47  Identities=11%  Similarity=0.029  Sum_probs=35.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHH
Q 013549          286 LGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       286 Lg~ly~~qG~y~eAe~l~~rAL~i~e~~l-G~~HP~va~~l~nLa~ly  332 (441)
                      -|.-.-..|+|++|..+|.++|+.+...+ .+..|..-..+..-..-|
T Consensus        12 ~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~ey   59 (75)
T cd02684          12 QAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQY   59 (75)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            33444456999999999999999999975 777777766666444444

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=80.28  E-value=17  Score=35.31  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh--hhhhHHHHHHHHHHHHhcC
Q 013549           83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI--LGVRVAAMEALAGLYLQLG  160 (441)
Q Consensus        83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~--lg~~~~al~~La~l~~~~G  160 (441)
                      ...++++++|.+.+.+..  .+-........||..|...|+|++|..+|+.+.....+.  ..+....+..+..++..+|
T Consensus       155 ~~iI~lL~~A~~~f~~~~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYG--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             HHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            367888888888776654  344567777899999999999999999999986554422  1122334555666666666


Q ss_pred             Ccc
Q 013549          161 QDD  163 (441)
Q Consensus       161 ~~~  163 (441)
                      +.+
T Consensus       233 ~~~  235 (247)
T PF11817_consen  233 DVE  235 (247)
T ss_pred             CHH
Confidence            543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=80.27  E-value=1.1e+02  Score=34.57  Aligned_cols=57  Identities=14%  Similarity=0.036  Sum_probs=42.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHH
Q 013549          101 QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVA  169 (441)
Q Consensus       101 g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~  169 (441)
                      +.++.....+.++||..+.++-+|.+|.+.|.+.        +.    .++++.+++.+.++++-+.+.
T Consensus       789 d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~--------~~----~e~~~ecly~le~f~~LE~la  845 (1189)
T KOG2041|consen  789 DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC--------GD----TENQIECLYRLELFGELEVLA  845 (1189)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cc----hHhHHHHHHHHHhhhhHHHHH
Confidence            4667778899999999999999999999999874        21    245556666656665555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	441
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	6e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	7e-04

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 33/250 (13%), Positives = 73/250 (29%), Gaps = 30/250 (12%)

Query: 119 YESGNYVEAIEKLQKVENFKNSILGVRVAAMEA---LAGLYLQLGQDDTSSVVADKCLQL 175
           ++   YVEAI   ++ E     +      A E    +A  Y  + Q   S     + L +
Sbjct: 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKA-EFHFKVAEAYYHMKQTHVSMYHILQALDI 170

Query: 176 CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK---GLQEEEGCTGSAALSY 232
            + H   + +T  ++      V         + + A    +    L  +       A+S 
Sbjct: 171 YQNHPLYSIRTIQSLF-----VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225

Query: 233 ---GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL 289
                    + +  +A + +QK  +V  E+        L               F L   
Sbjct: 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL---------------FGLSWT 270

Query: 290 EAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEG 349
               G    A + +   L          + ++ + L  +     ++       +   ++ 
Sbjct: 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330

Query: 350 LYRRALEFLK 359
           L+       +
Sbjct: 331 LHAYIEACAR 340

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 45/267 (16%), Positives = 88/267 (32%), Gaps = 48/267 (17%)

Query: 111 LLAMSTLLYESGNYVEAIEKLQKV-ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVA 169
           +++++   Y + ++    +    V E           + +    G  ++L + +    ++
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSVVMEKDPF-----HASCLPVHIGTLVELNKANELFYLS 79

Query: 170 DKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNL-ESAESFF-KGLQEEEGCTGS 227
            K + L     P N  ++ AV        G   L  G+  E A  +  K    E+   G 
Sbjct: 80  HKLVDL----YPSNPVSWFAV--------GCYYLMVGHKNEHARRYLSKATTLEKTY-GP 126

Query: 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD-MNTLGSCNMALEEVALAATF-- 284
           A ++YG           A   Y    ++    K     M  +G          LA  F  
Sbjct: 127 AWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLTNNSKLAERFFS 183

Query: 285 --------------ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH-PKVGVVLTCLA 329
                          +G +    G +  AE+     L K + +       K   +L  L 
Sbjct: 184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243

Query: 330 LMFRNKAMQEHSSALLIQEGLYRRALE 356
            + R   +++++ AL      +R+AL 
Sbjct: 244 HVCRK--LKKYAEALD----YHRQALV 264

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 28/224 (12%)

Query: 64  QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQL--------AESWRGISLLAMS 115
           Q ++  L    +        Q +    Q ++      ++                   ++
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 116 TLLYESGNYVEAIEKLQKV-ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ 174
               ++ NY +A    +++ +   N+     V  +EA A + +  GQ+  +  + +K LQ
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKAPNN-----VDCLEACAEMQVCRGQEKDALRMYEKILQ 116

Query: 175 LCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGE 234
           L    + +N           N      E      +  E+ +K L         A    G 
Sbjct: 117 L----EADNLAAN---IFLGNYYYLTAEQ---EKKKLETDYKKLSSPTKMQ-YARYRDGL 165

Query: 235 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278
               T  +  A+   QKVI             TL       +EV
Sbjct: 166 SKLFTTRYEKARNSLQKVILR---FPSTEAQKTLDKILRIEKEV 206

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 49/270 (18%)

Query: 119 YESGNYVEAIEKLQKVENFKNSILGVRVAAMEA---LAGLYLQLGQDDTSSVVADKCLQL 175
            +   Y+ AI+  +K E+    +   R+   E    ++  Y  + Q   S   A +  ++
Sbjct: 114 LDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172

Query: 176 CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK---GLQEEEGCTGSAALSY 232
            ++H+  N +     +     +     L     E A S F+    + E E        + 
Sbjct: 173 YKEHEAYNIRLLQCHS-----LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTL 227

Query: 233 ---GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL 289
              G   ++   +  A  ++++ I V  E      +    +  +            + Q+
Sbjct: 228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL--PQAYFL------------ITQI 273

Query: 290 EAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQE 348
              +G    A E  ++ +  +++     +      L  L L   + +A+Q     L  + 
Sbjct: 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM 333

Query: 349 -------------------GLYRRALEFLK 359
                                +++A  +  
Sbjct: 334 LYADLEDFAIDVAKYYHERKNFQKASAYFL 363

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 11/151 (7%)

Query: 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR--VAAMEALAGLYLQLGQDDTS 165
           G +L  +         Y +AI   ++          +     A   +  ++ +LG+ D +
Sbjct: 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283

Query: 166 SVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE--G 223
                K +   +K     Y       S    +K L  L+  + E+ + FF  L+ +    
Sbjct: 284 HEYHSKGMAYSQKAGDVIYL------SEFEFLKSLY-LSGPDEEAIQGFFDFLESKMLYA 336

Query: 224 CTGSAALSYGEYLHATRNFLLAKKFYQKVIE 254
                A+   +Y H  +NF  A  ++ KV +
Sbjct: 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 43/318 (13%), Positives = 93/318 (29%), Gaps = 49/318 (15%)

Query: 53  INGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLL 112
           +  LN +    +   +  S    + +  S+   +   E  LS+     + ++       L
Sbjct: 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL-----L 309

Query: 113 AMSTLLYESGNYVEAIEKLQKV-ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADK 171
             +  L+    +++ +    K+ E          +           + G+ +   ++++ 
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPY-----NLDVYPLHLASLHESGEKNKLYLISND 364

Query: 172 CLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF-KGLQEEEGCTGSAAL 230
            +       PE   T+ AV        G+  L    +  A  +F K    +    G A +
Sbjct: 365 LVDR----HPEKAVTWLAV--------GIYYLCVNKISEARRYFSKSSTMDPQF-GPAWI 411

Query: 231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF------ 284
            +            A   Y     +   Q        LG  +M L  + LA  +      
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

Query: 285 ----------ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR- 333
                      LG +  +  +   A       L   ++   S+          L   +R 
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRK 528

Query: 334 ----NKAMQEHSSALLIQ 347
               + A+   +  LL+ 
Sbjct: 529 LKMYDAAIDALNQGLLLS 546

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 31/260 (11%), Positives = 58/260 (22%), Gaps = 29/260 (11%)

Query: 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAME--ALAGLYLQLGQDDTSS 166
           +S  A +      G+               +   G     +E           G      
Sbjct: 9   LSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68

Query: 167 VVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK---GLQEEEG 223
                 +Q   +        Y  +        G      G+   A  + K    L +   
Sbjct: 69  AFFQAAIQAGTEDLRTLSAIYSQL--------GNAYFYLGDYNKAMQYHKHDLTLAKSMN 120

Query: 224 CTGSAALSY---GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM----NTLGSCNMALE 276
                A S    G  L     F  A    ++ + +  +  D          LG+   A  
Sbjct: 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180

Query: 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 336
           +            +        A E     L    +L        G     L   +    
Sbjct: 181 KHLGQRNPGKFGDDV-KEALTRAVEFYQENLKLMRDLGD--RGAQGRACGNLGNTYYL-- 235

Query: 337 MQEHSSALLIQEGLYRRALE 356
           + +  +A+      ++  L 
Sbjct: 236 LGDFQAAI----EHHQERLR 251

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 39/231 (16%)

Query: 82  YSQGMLVLEQCLSTQPSDGQ-LAESW--RGISLLAMSTLLYESGNYVEAIEKLQKV--EN 136
           +  G   + Q     PS  Q  A     RG          + + N+ EAI+  Q     +
Sbjct: 3   HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHF-------FTAKNFNEAIKYYQYAIELD 55

Query: 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANA 196
               +          ++  Y+  G  +       K L++    KP++ K       RA+A
Sbjct: 56  PNEPV------FYSNISACYISTGDLEKVIEFTTKALEI----KPDHSKAL---LRRASA 102

Query: 197 VKGLVELAHGNLESAESFFKGLQ---EEEGCTGSAALSYGEYLHATRNFL-LAKKFYQKV 252
            + L     GN   A      L    + +G +    L       A +       K   + 
Sbjct: 103 NESL-----GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157

Query: 253 IEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 303
            +VL      +  +  G  +  LE   +++       +       DA + L
Sbjct: 158 SQVLPSNTSLA--SFFGIFDSHLE---VSSVNTSSNYDTAYALLSDALQRL 203

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 38/288 (13%), Positives = 79/288 (27%), Gaps = 57/288 (19%)

Query: 76  QKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135
            K+DES+++   + E+ L     D +L E    ISL       +   + + A E ++K  
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEK-LAISLEHTGIFKFLKNDPLGAHEDIKKAI 264

Query: 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK---HKPENYKTYGAVNS 192
                    RV +   +A +               +     +K       N   Y     
Sbjct: 265 ELFP-----RVNSYIYMALIMADRNDS-------TEYYNYFDKALKLDSNNSSVY---YH 309

Query: 193 RANAVKGLVELAHGNLESAESFF-KGLQEEEGCTGSAALSY---GEYLHATRNFLLAKKF 248
           R      L      N + A   F K  + +          Y       +    F   +  
Sbjct: 310 RGQMNFIL-----QNYDQAGKDFDKAKELDP----ENIFPYIQLACLAYRENKFDDCETL 360

Query: 249 YQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308
           + +         +  +                       ++     +F  A +     + 
Sbjct: 361 FSEAKRK---FPEAPE-----------------VPNFFAEILTDKNDFDKALKQYDLAI- 399

Query: 309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356
           + E      +  +  ++    L+ RN  ++    A      L  +A +
Sbjct: 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT----NLLEKASK 443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 31/208 (14%)

Query: 101 QLAESW--RGISLLAMSTLLYESGNYVEAIEKLQKV-ENFKNSILGVRVAAMEALAGLYL 157
           + A +   +G          + +  Y +AI+      E  ++ +          L+  Y+
Sbjct: 4   KYALALKDKGNQF-------FRNKKYDDAIKYYNWALELKEDPV------FYSNLSACYV 50

Query: 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKG 217
            +G       ++ K L+L    KP+  K       RA+A +GL     G    A      
Sbjct: 51  SVGDLKKVVEMSTKALEL----KPDYSKVL---LRRASANEGL-----GKFADAMFDLSV 98

Query: 218 LQEEEGCTGSAALSY---GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274
           L        ++            A                   E                
Sbjct: 99  LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158

Query: 275 LEEVALAATFALGQLEAHMGNFGDAEEI 302
               ++A+ F + + E    N+ ++ E 
Sbjct: 159 PSVTSMASFFGIFKPELTFANYDESNEA 186

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 42/306 (13%), Positives = 78/306 (25%), Gaps = 50/306 (16%)

Query: 89  LEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE-----NFKNSILG 143
            E  +  +             +LLA   L +  G    A+E L+K E        +    
Sbjct: 34  FEDKVFYRTEFQNREFKATMCNLLAY--LKHLKGQNEAALECLRKAEELIQQEHADQAEI 91

Query: 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVEL 203
             +      A +Y  +G+     +  DK   +CEK           ++         ++ 
Sbjct: 92  RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC--EEGWTRLKC 149

Query: 204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFL---LAKKFYQKVIEVLAEQK 260
                E A+  F+   E++              +   N+     A    ++ I +     
Sbjct: 150 GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL---NP 206

Query: 261 DFSDM-----NTLGSCNMALEEVALA----------------ATFALGQLEAHMGNFGDA 299
           D   +       L       EE                       +  +          A
Sbjct: 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKA 266

Query: 300 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ------EHSSALLIQEGLYRR 353
            E+L + L         + P    +   +   +R K  Q                 L   
Sbjct: 267 IELLKKAL--------EYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318

Query: 354 ALEFLK 359
           A+  LK
Sbjct: 319 AVAHLK 324

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 32/258 (12%), Positives = 75/258 (29%), Gaps = 41/258 (15%)

Query: 66  INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYV 125
           +  AL   + ++  E   +G  ++E+ L   P      +  R       +          
Sbjct: 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV---TDVLRS-----AAKFYRRKDEPD 264

Query: 126 EAIEKLQKVENFK------NSILGVR-----VAAMEALAGLYLQLGQDDTSSVVADKCLQ 174
           +AIE L+K   +       +  +G          M           +       A   L+
Sbjct: 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324

Query: 175 LCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK---GLQEEEGCTGSAALS 231
             ++     ++     +  A+             E AE +F+     +          L 
Sbjct: 325 KADEANDNLFRVC---SILASL---HALA--DQYEEAEYYFQKEFSKELTPVAKQLLHLR 376

Query: 232 YGEYL-HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-------AT 283
           YG +  +  +    A   + + +++    +   +   +      + ++ L+       A 
Sbjct: 377 YGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMKDKLQKIAKMRLSKNGADSEAL 433

Query: 284 FALGQLEAHMGNFGDAEE 301
             L  L+        A+E
Sbjct: 434 HVLAFLQELNEKMQQADE 451

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 38/310 (12%), Positives = 91/310 (29%), Gaps = 48/310 (15%)

Query: 82  YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF--KN 139
             +   + +  L   P         R ++   +  +L+  G    ++  +Q+ E    ++
Sbjct: 30  PDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86

Query: 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKG 199
            +    + ++   + +    G   T+    +K  QL  +   E       ++     ++ 
Sbjct: 87  DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE----QLPMHEFLVRIRA 142

Query: 200 LVELAHGNLESAESFF-KGLQEEEGCTGSAALSYGEYL----HATRNFLLAKKFYQKVIE 254
            +  A   L+ AE+    G++          L     L     A  +   A+    ++  
Sbjct: 143 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202

Query: 255 VLAEQKDFSDMNTLGSCNMAL-------------------------EEVALAATFALGQL 289
           +L   K  SD  +  +    +                                   + + 
Sbjct: 203 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262

Query: 290 EAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-----RNKAMQEHSSAL 344
           +  +G F  AE +L         L       +   L  L  ++     ++ A +    AL
Sbjct: 263 QILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320

Query: 345 LI--QEGLYR 352
            +  + G   
Sbjct: 321 KLANRTGFIS 330

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 5/138 (3%)

Query: 51  NRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGIS 110
           N +     +P   Q + +    A        Y   +L L++ L+ Q +            
Sbjct: 100 NELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID--VYQNLYI 157

Query: 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSI---LGVRVAAMEALAGLYLQLGQDDTSSV 167
             A++ +  E+G   + I+  +++     ++       V      A       + + S  
Sbjct: 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217

Query: 168 VADKCLQLCEKHKPENYK 185
             +K +++  +       
Sbjct: 218 QVNKAIEISCRINSMALI 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.95
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.93
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.93
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.93
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.92
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.92
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.91
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.9
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.9
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.89
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.88
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.88
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.88
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.88
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.88
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.87
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.87
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.87
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.86
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.86
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.86
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.86
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.86
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.86
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.85
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.85
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.84
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.81
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.81
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.8
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.79
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.78
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.77
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.77
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.77
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.77
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.77
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.76
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.75
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.73
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.72
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.72
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.71
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.71
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.71
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.71
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.7
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.69
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.69
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.69
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.68
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.65
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.65
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.63
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.61
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.6
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.59
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.55
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.54
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.51
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.51
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.49
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.47
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.44
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.43
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.43
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.41
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.4
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.4
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.39
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.39
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.39
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.39
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.39
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.37
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.37
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.36
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.36
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.33
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.32
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.32
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.32
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.3
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.3
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.29
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.28
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.28
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.28
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.27
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.27
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.27
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.27
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.25
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.22
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.22
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.19
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.17
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.15
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.15
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.14
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.13
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.11
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.1
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.1
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.1
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.09
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.09
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.05
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.02
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.01
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.01
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.0
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.0
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.99
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.98
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.97
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.95
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.93
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.93
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.92
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.91
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.91
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.9
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.9
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.9
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.84
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.73
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.69
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.68
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.66
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.65
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.64
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.56
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.55
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.55
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.54
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.43
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.31
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.27
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.24
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.19
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.14
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.09
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.08
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.08
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.94
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.85
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.74
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.73
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.66
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.49
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.38
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.34
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.32
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.25
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.23
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.13
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.09
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.99
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.94
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.82
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.34
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.86
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.78
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.76
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.72
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.41
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.14
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	90.68
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	90.22
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.65
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.5
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	88.95
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	88.71
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.86
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	87.67
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.36
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.18
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	85.82
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	85.66
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	85.37
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	84.82
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	84.46
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	83.4
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	83.18
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	82.6
2npm_A	260	14-3-3 domain containing protein; cell regulator p	82.35
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	82.14
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	81.67
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	81.25
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	81.2
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	81.1
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	80.8

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.95  E-value=3.6e-25  Score=221.18  Aligned_cols=301  Identities=17%  Similarity=0.152  Sum_probs=242.4

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      ..+..+..+...|..+.    ..|+|++|+.+|++++.+.    ..+....+.++.++|.+|..+|+|++|++.|++++.
T Consensus        43 ~~~~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (411)
T 4a1s_A           43 GGSSMCLELALEGERLC----NAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT  114 (411)
T ss_dssp             -CHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHH----HhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34788888999999874    3689999999999999973    223445788999999999999999999999999998


Q ss_pred             hhhhhhh--hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC-------
Q 013549          137 FKNSILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN-------  207 (441)
Q Consensus       137 i~~~~lg--~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~-------  207 (441)
                      +.+..-.  ....++.+++.+|..+|++++|..++++++++.......      ..........|.++..+|+       
T Consensus       115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~~~~~  188 (411)
T 4a1s_A          115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR------LSEGRALYNLGNVYHAKGKHLGQRNP  188 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHHHHcCcccccccc
Confidence            8755311  124578889999999999999999999999988765421      1112333456888889999       


Q ss_pred             ----------HHHHHHHHHhhhhc---cC---CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549          208 ----------LESAESFFKGLQEE---EG---CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC  271 (441)
Q Consensus       208 ----------y~eAe~l~~~aL~~---~~---~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~  271 (441)
                                |++|+.+|++++..   ..   ....+..++|.+|..+|+|++|+.+|++++++......          
T Consensus       189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------  258 (411)
T 4a1s_A          189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD----------  258 (411)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC----------
Confidence                      99999999999881   11   12345567899999999999999999999999643211          


Q ss_pred             ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549          272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY  351 (441)
Q Consensus       272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly  351 (441)
                          ......++.++|.+|..+|+|++|+.+|++++.+..+.  .+++..+.++.++|.+|..+|++++|      ..+|
T Consensus       259 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~  326 (411)
T 4a1s_A          259 ----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTA------IEYH  326 (411)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred             ----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHH------HHHH
Confidence                11134567899999999999999999999999999986  56677889999999999999999987      8999


Q ss_pred             HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                      ++++++.... .+.+.....+.+++.++..+|+|++|+....+
T Consensus       327 ~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          327 NRHLAIAQEL-GDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            9999998643 34455677888999999999999999887644

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.95  E-value=1.3e-24  Score=214.76  Aligned_cols=297  Identities=16%  Similarity=0.116  Sum_probs=239.2

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      ..+..+...|..+.    ..|+|++|+.+|++++.+.    ..+.+..+.++.++|.+|..+|+|++|++.|++++.+.+
T Consensus         7 ~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   78 (406)
T 3sf4_A            7 ASCLELALEGERLC----KSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR   78 (406)
T ss_dssp             CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            34566777888873    3689999999999999973    234455689999999999999999999999999998876


Q ss_pred             hhhhh---hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC---------
Q 013549          140 SILGV---RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN---------  207 (441)
Q Consensus       140 ~~lg~---~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~---------  207 (441)
                      .. +.   ...++.+++.+|..+|++++|..++++++++.......      ..........|.++..+|+         
T Consensus        79 ~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~~~~~~~  151 (406)
T 3sf4_A           79 TI-GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK------VGEARALYNLGNVYHAKGKSFGCPGPQD  151 (406)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHTCC------
T ss_pred             hc-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHcCCcccccccch
Confidence            53 22   24578889999999999999999999999998765521      1112333456888889999         


Q ss_pred             -----------HHHHHHHHHhhhhc------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccc
Q 013549          208 -----------LESAESFFKGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS  270 (441)
Q Consensus       208 -----------y~eAe~l~~~aL~~------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~  270 (441)
                                 |++|+.+|++++..      .+....+..++|.++..+|+|++|+.+|++++++......         
T Consensus       152 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------  222 (406)
T 3sf4_A          152 VGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------  222 (406)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------
Confidence                       99999999999881      1112334567899999999999999999999999643211         


Q ss_pred             cccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHH
Q 013549          271 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL  350 (441)
Q Consensus       271 ~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~l  350 (441)
                          + .....++.++|.+|..+|+|++|+.+|++++.+..+.  .+++..+.++.++|.+|..+|++++|      ...
T Consensus       223 ----~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~  289 (406)
T 3sf4_A          223 ----K-AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDY  289 (406)
T ss_dssp             ----H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHH
T ss_pred             ----c-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHH------HHH
Confidence                1 1134478899999999999999999999999999875  46778899999999999999999987      899


Q ss_pred             HHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          351 YRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       351 y~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                      |++++++.... .+++.....+.+++.++..+|+|++|+.....
T Consensus       290 ~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  332 (406)
T 3sf4_A          290 HLKHLAIAQEL-NDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  332 (406)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999998653 34555677888999999999999999887644

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.94  E-value=4.8e-24  Score=203.23  Aligned_cols=295  Identities=16%  Similarity=0.109  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      ...+...|..+.    ..|+|++|+.+|++++.+.    ..+.+..+.++.++|.+|..+|+|++|++.+++++.+.+..
T Consensus         5 ~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   76 (338)
T 3ro2_A            5 CLELALEGERLC----KSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI   76 (338)
T ss_dssp             HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence            345556666663    3689999999999999973    23455568999999999999999999999999999887653


Q ss_pred             hhh--hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC------------
Q 013549          142 LGV--RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN------------  207 (441)
Q Consensus       142 lg~--~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~------------  207 (441)
                      -..  ...++..++.+|..+|++++|..++++++++.......      ..........|.++..+|+            
T Consensus        77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  150 (338)
T 3ro2_A           77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK------VGEARALYNLGNVYHAKGKSFGCPGPQDTGE  150 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred             cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc------hHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence            111  24577889999999999999999999999988765421      1112233456788889999            


Q ss_pred             --------HHHHHHHHHhhhhc---cC---CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          208 --------LESAESFFKGLQEE---EG---CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       208 --------y~eAe~l~~~aL~~---~~---~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                              |++|..+|++++..   ..   ....+..++|.++..+|+|++|+.+|++++++......            
T Consensus       151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------  218 (338)
T 3ro2_A          151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------  218 (338)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------------
Confidence                    99999999999871   11   12334567799999999999999999999999643211            


Q ss_pred             chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549          274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR  353 (441)
Q Consensus       274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r  353 (441)
                        ......++.++|.+|..+|+|++|+++|++++.+..+.  .+++....++.++|.+|..+|++++|      ...|++
T Consensus       219 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~  288 (338)
T 3ro2_A          219 --KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYHLK  288 (338)
T ss_dssp             --HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHH------HHHHHH
Confidence              11134578899999999999999999999999999885  46778899999999999999999987      899999


Q ss_pred             HHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549          354 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       354 AL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      ++++.... .+.+.....+.+++.++..+|++++|+....
T Consensus       289 a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (338)
T 3ro2_A          289 HLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAE  327 (338)
T ss_dssp             HHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            99998542 2345566677889999999999998887753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.94  E-value=4.4e-24  Score=210.94  Aligned_cols=297  Identities=15%  Similarity=0.106  Sum_probs=238.6

Q ss_pred             CCCchH-HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           55 GLNSNP-VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        55 g~~h~~-~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      .|+.|. .+..+.++|..+.    ..|+|++|+.++++++.+....  .++|..+.++.++|.+|..+|+|++|+..+++
T Consensus        39 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  112 (406)
T 3sf4_A           39 GTEDLKTLSAIYSQLGNAYF----YLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR  112 (406)
T ss_dssp             CCSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            444444 5677888999884    3689999999999999987666  47889999999999999999999999999999


Q ss_pred             HHHhhhhhhhh--hHHHHHHHHHHHHhcCC--------------------cchhHHHHHHHHHHHHhcCCCcchhhhhhH
Q 013549          134 VENFKNSILGV--RVAAMEALAGLYLQLGQ--------------------DDTSSVVADKCLQLCEKHKPENYKTYGAVN  191 (441)
Q Consensus       134 al~i~~~~lg~--~~~al~~La~l~~~~G~--------------------~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~  191 (441)
                      ++.+.+..-..  ...++.+++.+|..+|+                    +++|..++++++.+.......      ...
T Consensus       113 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~------~~~  186 (406)
T 3sf4_A          113 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR------AAQ  186 (406)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH------HHH
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc------HHH
Confidence            99988764221  23478889999999999                    999999999999887765421      111


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549          192 SRANAVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM  265 (441)
Q Consensus       192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~  265 (441)
                      .......|.++..+|+|++|+.+|++++..   .+..   ..+..++|.++..+|+|++|+.+|++++++......    
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----  262 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----  262 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC----
Confidence            223345688888999999999999999982   1111   234567899999999999999999999999643211    


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhH
Q 013549          266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL  345 (441)
Q Consensus       266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~  345 (441)
                                ......++.++|.+|..+|+|++|+++|++++.+..+.  .+++....++.++|.+|..+|++++|    
T Consensus       263 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A----  326 (406)
T 3sf4_A          263 ----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQA----  326 (406)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH----
T ss_pred             ----------chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCCHHHH----
Confidence                      11134567899999999999999999999999999886  34788899999999999999999987    


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHH
Q 013549          346 IQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA  386 (441)
Q Consensus       346 ~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~ya  386 (441)
                        ...|++++++.+.. .+.+.....+.+++.++...|+..
T Consensus       327 --~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          327 --MHFAEKHLEISREV-GDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             --HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             --HHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHhhHhH
Confidence              89999999998754 344556677778899998888763

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.93  E-value=3.4e-24  Score=213.53  Aligned_cols=289  Identities=15%  Similarity=0.107  Sum_probs=171.5

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      |++++|+.++++++.+        +|..+.++.++|.+|..+|+|++|++.|++++.+.+..    ..++.+++.++..+
T Consensus        47 ~~~~~a~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~  114 (388)
T 1w3b_A           47 RRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF----IDGYINLAAALVAA  114 (388)
T ss_dssp             TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch----HHHHHHHHHHHHHc
Confidence            4555555555555542        23344455555555555555555555555555544332    12344455555555


Q ss_pred             CCcchhHHHHHHHHHHHHhcCC------------Ccchhhhh----------hHhHHHHHHHHHHHHcCCHHHHHHHHHh
Q 013549          160 GQDDTSSVVADKCLQLCEKHKP------------ENYKTYGA----------VNSRANAVKGLVELAHGNLESAESFFKG  217 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~------------~~~~~~~~----------l~~~a~al~gl~~~~qG~y~eAe~l~~~  217 (441)
                      |++++|...+++++.+......            ..++++..          -...+....|.++..+|++++|+..|++
T Consensus       115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  194 (388)
T 1w3b_A          115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK  194 (388)
T ss_dssp             SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555555554432100000            00000000          0001112235555566666666666666


Q ss_pred             hhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHH
Q 013549          218 LQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG  297 (441)
Q Consensus       218 aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~  297 (441)
                      ++...+....+..++|.++..+|+|++|+..|++++.+   .               |+  ...++.++|.+|..+|+++
T Consensus       195 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~---------------p~--~~~~~~~l~~~~~~~g~~~  254 (388)
T 1w3b_A          195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---S---------------PN--HAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---C---------------TT--CHHHHHHHHHHHHHTTCHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C---------------cC--CHHHHHHHHHHHHHcCCHH
Confidence            66644445555556666666666666666666666665   1               11  1235678899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHH
Q 013549          298 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI  377 (441)
Q Consensus       298 eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~  377 (441)
                      +|++.|++++.+        +|....++.++|.+|..+|++++|      +..|++++++.    |++   ...+.+++.
T Consensus       255 ~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~----p~~---~~~~~~l~~  313 (388)
T 1w3b_A          255 LAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEA------EDCYNTALRLC----PTH---ADSLNNLAN  313 (388)
T ss_dssp             HHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHC----TTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC----ccc---HHHHHHHHH
Confidence            999999998874        344445688899999999998887      88899998772    233   345678888


Q ss_pred             HHHHhccHHHHHHHhhchh----hHHHHHHHHHHHHHhccChhHHHHh
Q 013549          378 VALARGGYAEALSVQQNRK----DEGERMKRWAEAAWRNRRVSLAEAL  421 (441)
Q Consensus       378 ~~~~~g~yaeal~~~~~r~----~eae~~~~~a~~~~~~~r~~~~~~l  421 (441)
                      ++..+|++++|+....+-.    ...+.+...+..+++.+++..|..+
T Consensus       314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  361 (388)
T 1w3b_A          314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999988763321    1256667788888888887766443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.93  E-value=1.7e-23  Score=208.46  Aligned_cols=290  Identities=17%  Similarity=0.135  Sum_probs=197.7

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|+|++|+..+++++...        |+...++..+|.++..+|++++|+..+++++...+..    ..++..++.+|.
T Consensus        11 ~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~~~   78 (388)
T 1w3b_A           11 QAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYK   78 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHH
Confidence            3689999999999999743        4445678899999999999999999999999887543    347889999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCC------------CcchhhhhhHh----------HHHHHHHHHHHHcCCHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKP------------ENYKTYGAVNS----------RANAVKGLVELAHGNLESAESFF  215 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~------------~~~~~~~~l~~----------~a~al~gl~~~~qG~y~eAe~l~  215 (441)
                      .+|++++|..++++++.+......            ..++++.....          ......|.++..+|++++|+.+|
T Consensus        79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (388)
T 1w3b_A           79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999999999865211000            00000000000          01112344455566666666666


Q ss_pred             HhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC
Q 013549          216 KGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN  295 (441)
Q Consensus       216 ~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~  295 (441)
                      ++++...+....+..++|.++..+|++++|+..|++++.+   ..               +  ...++.++|.++..+|+
T Consensus       159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p---------------~--~~~~~~~lg~~~~~~~~  218 (388)
T 1w3b_A          159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---DP---------------N--FLDAYINLGNVLKEARI  218 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CT---------------T--CHHHHHHHHHHHHTTTC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC---------------C--cHHHHHHHHHHHHHcCC
Confidence            6666654445555556666666666666666666666665   10               0  12346677777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccH
Q 013549          296 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRT  375 (441)
Q Consensus       296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl  375 (441)
                      |++|+..|++++.+        +|....++.++|.+|..+|++++|      +..|++++++    .|+++   ....++
T Consensus       219 ~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~----~p~~~---~~~~~l  277 (388)
T 1w3b_A          219 FDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLA------IDTYRRAIEL----QPHFP---DAYCNL  277 (388)
T ss_dssp             TTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHT----CSSCH---HHHHHH
T ss_pred             HHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhh----CCCCH---HHHHHH
Confidence            77777777777765        355566778888999999988876      8888888775    23333   456788


Q ss_pred             HHHHHHhccHHHHHHHhhchhh----HHHHHHHHHHHHHhccChhHHHH
Q 013549          376 DIVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEA  420 (441)
Q Consensus       376 ~~~~~~~g~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~~~~~  420 (441)
                      +.++..+|++++|+.....-..    ..+.+...+..+.+.+++..+..
T Consensus       278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  326 (388)
T 1w3b_A          278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR  326 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            8899999999999887643221    24566667777777777666544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.93  E-value=4.1e-24  Score=203.47  Aligned_cols=282  Identities=16%  Similarity=0.149  Sum_probs=210.8

Q ss_pred             ccccCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHH
Q 013549           51 NRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEK  130 (441)
Q Consensus        51 ~~~~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~  130 (441)
                      ....|+++|..+..+.++|..+.    ..|+|++|+.++++++.+.....++++|..+.++.++|.+|..+|+|++|++.
T Consensus        16 ~q~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~   91 (311)
T 3nf1_A           16 FQGGGYEIPARLRTLHNLVIQYA----SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL   91 (311)
T ss_dssp             CSSSCTTSCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccCCCCcchHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34579999999999999999984    36899999999999999998888889999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhh----hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcC
Q 013549          131 LQKVENFKNSILG----VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG  206 (441)
Q Consensus       131 ~~ral~i~~~~lg----~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG  206 (441)
                      |++++.+.+...+    ....++.+++.+|..+|++++|..++++++++.....+...    ..........|.++..+|
T Consensus        92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~  167 (311)
T 3nf1_A           92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH----PDVAKQLNNLALLCQNQG  167 (311)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHcC
Confidence            9999998765422    22457888999999999999999999999998766521110    111223344677888999


Q ss_pred             CHHHHHHHHHhhhhc--------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHH
Q 013549          207 NLESAESFFKGLQEE--------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV  278 (441)
Q Consensus       207 ~y~eAe~l~~~aL~~--------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~  278 (441)
                      +|++|+.+|++++..        .+....+...+|.+|..+|++++|+.+|++++++..+..-....+...     .-..
T Consensus       168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~  242 (311)
T 3nf1_A          168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK-----PIWM  242 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C-----CHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH-----HHHH
Confidence            999999999999982        222234557789999999999999999999999854322100001100     1112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      ....+..++..+...+++.+|...+++++.        .+|....++.+||.+|..+|++++|      ...|++|+++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~l~  308 (311)
T 3nf1_A          243 HAEEREECKGKQKDGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAA------ETLEEAAMRSR  308 (311)
T ss_dssp             HHHHHHHC-------CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHH
T ss_pred             HHHHHHHhcCchhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHh
Confidence            334556777788888888888888877664        7899999999999999999999987      89999999986


Q ss_pred             h
Q 013549          359 K  359 (441)
Q Consensus       359 ~  359 (441)
                      +
T Consensus       309 ~  309 (311)
T 3nf1_A          309 K  309 (311)
T ss_dssp             C
T ss_pred             h
Confidence            4

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=8.4e-24  Score=208.62  Aligned_cols=285  Identities=13%  Similarity=0.052  Sum_probs=213.5

Q ss_pred             CCCch-HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           55 GLNSN-PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        55 g~~h~-~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      .+++| ..+..+.++|..+.+    .|+|++|+.+|++++.+.        |..+.++.++|.+|..+|+|++|++.|++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  124 (365)
T 4eqf_A           57 HTENPFKDWPGAFEEGLKRLK----EGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQR  124 (365)
T ss_dssp             CSSCTTTTCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCCcccchhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34444 345567888888743    689999999999999854        44577899999999999999999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549          134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES  213 (441)
Q Consensus       134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~  213 (441)
                      ++.+.+..    ..++.+++.+|..+|++++|..++++++.+.......... .... .......+.++..+|++++|+.
T Consensus       125 al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~  198 (365)
T 4eqf_A          125 CLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN-KKGS-PGLTRRMSKSPVDSSVLEGVKE  198 (365)
T ss_dssp             HHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------CCHHHHHHHH
T ss_pred             HHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhh-hccc-hHHHHHHHHHHhhhhhHHHHHH
Confidence            99887653    3478899999999999999999999998764332211000 0000 0011124667778999999999


Q ss_pred             HHHhhhhccCC--chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549          214 FFKGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA  291 (441)
Q Consensus       214 l~~~aL~~~~~--~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~  291 (441)
                      +|++++...+.  ...+..++|.+|..+|+|++|+.+|++++++.   ..                 ...++++||.+|.
T Consensus       199 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~-----------------~~~~~~~l~~~~~  258 (365)
T 4eqf_A          199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR---PE-----------------DYSLWNRLGATLA  258 (365)
T ss_dssp             HHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-----------------CHHHHHHHHHHHH
Confidence            99999996555  56778889999999999999999999999981   11                 1246789999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc-CCCCCcch--
Q 013549          292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPLESEGV--  368 (441)
Q Consensus       292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~-~~~~~~~~--  368 (441)
                      .+|+|++|+++|++++.+        +|....++.+||.+|..+|++++|      ...|++++++... .++.++..  
T Consensus       259 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~~~~~  324 (365)
T 4eqf_A          259 NGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREA------VSNFLTALSLQRKSRNQQQVPHPA  324 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHH------HHHHHHHHHHHHCC----------
T ss_pred             HcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCcccCCCcccchhh
Confidence            999999999999999997        677788999999999999999987      8999999999853 23334332  


Q ss_pred             --HhhhccHHHHHHHhccHHHHHHH
Q 013549          369 --ETKVDRTDIVALARGGYAEALSV  391 (441)
Q Consensus       369 --~~~l~nl~~~~~~~g~yaeal~~  391 (441)
                        .....+++.++...|+++.+...
T Consensus       325 ~~~~~~~~l~~~~~~~g~~~~a~~~  349 (365)
T 4eqf_A          325 ISGNIWAALRIALSLMDQPELFQAA  349 (365)
T ss_dssp             --CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCcHHHHHHH
Confidence              34556777777777777655443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.92  E-value=1.6e-24  Score=228.36  Aligned_cols=143  Identities=10%  Similarity=0.071  Sum_probs=126.6

Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      +..+..||+|++|+++|+++|+|+   +.     .+|++|  |+  ++.+++|||.+|..||+|++|+++|+++|+|+++
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~---~~-----~lg~~H--p~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~  383 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQ---EP-----VFADTN--LY--VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK  383 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHH---TT-----TBCTTS--HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHH---HH-----hcCCCC--HH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            445789999999999999999995   33     566433  32  5668999999999999999999999999999999


Q ss_pred             hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549          313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVALARGGYAEALSV  391 (441)
Q Consensus       313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~  391 (441)
                      ++|++||+|+.+++|||.+|..||+|++|      +++|+|||+|++ ..|++||+|+..+++++.++..++.|.+|...
T Consensus       384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~  457 (490)
T 3n71_A          384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVG------HGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM  457 (490)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987      999999999995 67999999999999999999888888766666


Q ss_pred             hh
Q 013549          392 QQ  393 (441)
Q Consensus       392 ~~  393 (441)
                      +.
T Consensus       458 ~~  459 (490)
T 3n71_A          458 YH  459 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.92  E-value=1.6e-22  Score=192.56  Aligned_cols=271  Identities=15%  Similarity=0.116  Sum_probs=215.8

Q ss_pred             CCchH-HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549           56 LNSNP-VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        56 ~~h~~-~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      |++|. .+..+.++|..+.    ..|+|++|+.++++++.+....  ++++..+.++.++|.+|..+|+|++|++.++++
T Consensus        36 ~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  109 (338)
T 3ro2_A           36 TEDLKTLSAIYSQLGNAYF----YLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH  109 (338)
T ss_dssp             CSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            44444 4677788999884    3689999999999999987665  468889999999999999999999999999999


Q ss_pred             HHhhhhhhhh--hHHHHHHHHHHHHhcCC--------------------cchhHHHHHHHHHHHHhcCCCcchhhhhhHh
Q 013549          135 ENFKNSILGV--RVAAMEALAGLYLQLGQ--------------------DDTSSVVADKCLQLCEKHKPENYKTYGAVNS  192 (441)
Q Consensus       135 l~i~~~~lg~--~~~al~~La~l~~~~G~--------------------~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~  192 (441)
                      +.+.+..-..  ...++.+++.+|..+|+                    +++|..++++++.+.......      ....
T Consensus       110 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~------~~~~  183 (338)
T 3ro2_A          110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR------AAQG  183 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCH------HHHH
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH------HHHH
Confidence            9988764221  23477889999999999                    899999999988887665421      1112


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCC
Q 013549          193 RANAVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMN  266 (441)
Q Consensus       193 ~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~  266 (441)
                      ......+.++..+|+|++|+.+|++++..   ....   ..+..++|.++..+|++++|+.+|++++++......     
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----  258 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----  258 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-----
Confidence            23344677888999999999999999982   1111   234567899999999999999999999999543211     


Q ss_pred             CccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHH
Q 013549          267 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI  346 (441)
Q Consensus       267 ~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~  346 (441)
                               ......++.++|.+|..+|+|++|.++|++++.+..+.-  +++....++.+||.+|..+|++++|     
T Consensus       259 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A-----  322 (338)
T 3ro2_A          259 ---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQA-----  322 (338)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHH-----
T ss_pred             ---------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCChHHH-----
Confidence                     112345678999999999999999999999999998763  4677889999999999999999987     


Q ss_pred             HHHHHHHHHHHhhc
Q 013549          347 QEGLYRRALEFLKA  360 (441)
Q Consensus       347 Ae~ly~rAL~i~~~  360 (441)
                       ...|++++++.+.
T Consensus       323 -~~~~~~a~~~~~~  335 (338)
T 3ro2_A          323 -MHFAEKHLEISRE  335 (338)
T ss_dssp             -HHHHHHHHHC---
T ss_pred             -HHHHHHHHHHHHh
Confidence             8999999999764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.92  E-value=2.3e-22  Score=200.76  Aligned_cols=288  Identities=16%  Similarity=0.092  Sum_probs=226.7

Q ss_pred             CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549          103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE  182 (441)
Q Consensus       103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~  182 (441)
                      ..+..+..+..+|..+..+|+|++|+..|++++.+.+........++..++.+|..+|++++|..++++++.+.......
T Consensus        43 ~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  122 (411)
T 4a1s_A           43 GGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR  122 (411)
T ss_dssp             -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             chhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence            34788999999999999999999999999999998665433234578899999999999999999999999988765421


Q ss_pred             cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc------cCCchHHHHHHHHHHHHccC---------------
Q 013549          183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE------EGCTGSAALSYGEYLHATRN---------------  241 (441)
Q Consensus       183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~------~~~~~~~a~~~a~~~~~qG~---------------  241 (441)
                            .....+....|.++..+|+|++|+.+|++++..      .+....+..++|.+|..+|+               
T Consensus       123 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~  196 (411)
T 4a1s_A          123 ------LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK  196 (411)
T ss_dssp             ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred             ------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence                  111233345688888999999999999999982      22233456778999999999               


Q ss_pred             --hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549          242 --FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP  319 (441)
Q Consensus       242 --y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP  319 (441)
                        |++|+.+|++++++......             + .....++.++|.+|..+|+|++|+++|++++.+..+.  .+++
T Consensus       197 ~~~~~A~~~~~~al~~~~~~~~-------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  260 (411)
T 4a1s_A          197 EALTRAVEFYQENLKLMRDLGD-------------R-GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRA  260 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC-------------H-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcH
Confidence              99999999999998643221             0 1134578899999999999999999999999999984  3667


Q ss_pred             hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchh---
Q 013549          320 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK---  396 (441)
Q Consensus       320 ~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~---  396 (441)
                      .++.++.++|.+|..+|++++|      +..|++++++.... .+++.....+.+++.++..+|+|++|+.....-.   
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  333 (411)
T 4a1s_A          261 AERRANSNLGNSHIFLGQFEDA------AEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA  333 (411)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHH------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            7889999999999999999987      89999999998643 3444566788899999999999999987653322   


Q ss_pred             -------hHHHHHHHHHHHHHhccChhHHH
Q 013549          397 -------DEGERMKRWAEAAWRNRRVSLAE  419 (441)
Q Consensus       397 -------~eae~~~~~a~~~~~~~r~~~~~  419 (441)
                             ..+..+...+..+++.+++..|.
T Consensus       334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  363 (411)
T 4a1s_A          334 QELGDRIGEARACWSLGNAHSAIGGHERAL  363 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence                   22344555677777766655443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.92  E-value=4.4e-22  Score=199.12  Aligned_cols=255  Identities=11%  Similarity=0.031  Sum_probs=210.4

Q ss_pred             HHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh-h--
Q 013549           68 YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG-V--  144 (441)
Q Consensus        68 ~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg-~--  144 (441)
                      .|..+.    ..|+|++|+.+|++++.+....  ++++..+.++.++|.+|..+|+|++|+..+++++++.+..-. .  
T Consensus       109 ~g~~~~----~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          109 RGMYEL----DQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHH----HTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHH----HhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence            455542    4689999999999999987665  577889999999999999999999999999999999876522 1  


Q ss_pred             hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh----
Q 013549          145 RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE----  220 (441)
Q Consensus       145 ~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~----  220 (441)
                      ...++++++.+|..+|++++|..++++++++.......      .....+....|.++..+|+|++|+.+|++++.    
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            23578899999999999999999999999998766421      12223334578889999999999999999999    


Q ss_pred             -cc-CCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549          221 -EE-GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD  298 (441)
Q Consensus       221 -~~-~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e  298 (441)
                       .. +....+..++|.++..+|++++|..+|++|+++..+...             +.  ....+.+||.+|..+|++  
T Consensus       257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~--~~~~~~~l~~~~~~~~~~--  319 (383)
T 3ulq_A          257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-------------VI--YLSEFEFLKSLYLSGPDE--  319 (383)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------HH--HHHHHHHHHHHHTSSCCH--
T ss_pred             hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-------------HH--HHHHHHHHHHHHhCCCcH--
Confidence             23 444566788899999999999999999999999643211             11  123367899999999998  


Q ss_pred             HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                        +.+++|+.++++.  ..+|.+..++.+||.+|..+|++++|      ...|++|+++.+..
T Consensus       320 --~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A------~~~~~~al~~~~~i  372 (383)
T 3ulq_A          320 --EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKA------SAYFLKVEQVRQLI  372 (383)
T ss_dssp             --HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHTSC
T ss_pred             --HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHh
Confidence              6788888888887  77899999999999999999999987      89999999998754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=5.4e-22  Score=200.14  Aligned_cols=310  Identities=15%  Similarity=0.066  Sum_probs=240.5

Q ss_pred             CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549           56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE  135 (441)
Q Consensus        56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral  135 (441)
                      +.+|+.+..+..+|..+.+    .|+|++|+.+|++++.+        +|....++.++|.+|..+|+|++|+..|++++
T Consensus        20 ~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           20 FQSMADVEKHLELGKKLLA----AGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             ---CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4678888889999998843    68999999999999975        34457899999999999999999999999998


Q ss_pred             HhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH-------HHHHHHHHHHHcCCH
Q 013549          136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR-------ANAVKGLVELAHGNL  208 (441)
Q Consensus       136 ~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~-------a~al~gl~~~~qG~y  208 (441)
                      .+.+..    ..++..++.+|..+|++++|..++++++.+    .+............       .....+..+..+|+|
T Consensus        88 ~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  159 (450)
T 2y4t_A           88 QLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY  159 (450)
T ss_dssp             HHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             hcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            887553    347788999999999999999999888642    11110000111000       111246667899999


Q ss_pred             HHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH
Q 013549          209 ESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ  288 (441)
Q Consensus       209 ~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~  288 (441)
                      ++|..+|++++...+....+...+|.+|..+|++++|+.+|++++++.   ..                 ...+++++|.
T Consensus       160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-----------------~~~~~~~l~~  219 (450)
T 2y4t_A          160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---ND-----------------NTEAFYKIST  219 (450)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CS-----------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-----------------CHHHHHHHHH
Confidence            999999999999766677788889999999999999999999999882   11                 1246789999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHH---------HHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          289 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL---------TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       289 ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l---------~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      +|..+|++++|+.+|++++.+     .++++.+...+         .++|.+|..+|++++|      ..+|++++++. 
T Consensus       220 ~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~l~~~-  287 (450)
T 2y4t_A          220 LYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA------TSKYESVMKTE-  287 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC-
Confidence            999999999999999999954     67777766655         4559999999999987      89999999863 


Q ss_pred             cCCCCCcc-hHhhhccHHHHHHHhccHHHHHHHhhchh----hHHHHHHHHHHHHHhccChhHHHH
Q 013549          360 APPLESEG-VETKVDRTDIVALARGGYAEALSVQQNRK----DEGERMKRWAEAAWRNRRVSLAEA  420 (441)
Q Consensus       360 ~~~~~~~~-~~~~l~nl~~~~~~~g~yaeal~~~~~r~----~eae~~~~~a~~~~~~~r~~~~~~  420 (441)
                         |+++. ....+.+++.++...|+|++|+.....-.    ...+.+...+..++..+++..|..
T Consensus       288 ---p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~  350 (450)
T 2y4t_A          288 ---PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ  350 (450)
T ss_dssp             ---CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ---CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence               33443 24567789999999999999988764322    225777788888888888776643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.91  E-value=6.5e-23  Score=191.69  Aligned_cols=258  Identities=15%  Similarity=0.142  Sum_probs=198.1

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh----hhHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG----VRVAAMEALA  153 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg----~~~~al~~La  153 (441)
                      +.|++++|+.+|++++.+..+..++++|..+.++.++|.+|..+|+|++|++.|++++.+.....|    ....++.+++
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999998765422    2345788999


Q ss_pred             HHHHhcCCcchhHHHHHHHHHHHHhcCCC-cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc--------cCC
Q 013549          154 GLYLQLGQDDTSSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE--------EGC  224 (441)
Q Consensus       154 ~l~~~~G~~~~A~~l~~~~L~i~~~~~~~-~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~--------~~~  224 (441)
                      .+|..+|++++|..++++++.+.....+. ++     ....+....|.++..+|+|++|+.+|++++..        .+.
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  167 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHP-----DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN  167 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            99999999999999999999998665421 11     11223334677888999999999999999983        222


Q ss_pred             chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT  304 (441)
Q Consensus       225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~  304 (441)
                      ...+..++|.++..+|++++|+.+|++++++...... .....        .  ....+..++..+...+.+..+.. |.
T Consensus       168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~-~~  235 (283)
T 3edt_B          168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF-GSVNG--------D--NKPIWMHAEEREESKDKRRDSAP-YG  235 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS-SSCCS--------S--CCCHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCcch--------h--HHHHHHHHHHHHhcCCchhHHHH-HH
Confidence            3445678899999999999999999999999644322 11010        0  11235677777777777776655 33


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      ++ ....+.++++||....++.+||.+|..+|++++|      ..+|++++++.|
T Consensus       236 ~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~k  283 (283)
T 3edt_B          236 EY-GSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA------HTLEDCASRNRK  283 (283)
T ss_dssp             --------CCCCCCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC-
T ss_pred             HH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhhC
Confidence            33 4455678889999999999999999999999987      899999998753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.90  E-value=3.1e-22  Score=196.21  Aligned_cols=279  Identities=12%  Similarity=0.069  Sum_probs=217.0

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      +..+.++|..+.+    .|+|++|+.+|++++.+        +|....++.++|.+|..+|+|++|++.|++++.+.+..
T Consensus        64 ~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  131 (368)
T 1fch_A           64 HPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN  131 (368)
T ss_dssp             CSSHHHHHHHHHH----TTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence            4556778888743    68999999999999975        34456789999999999999999999999999887653


Q ss_pred             hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh------hhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY------GAVNSRANAVKGLVELAHGNLESAESFF  215 (441)
Q Consensus       142 lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~------~~l~~~a~al~gl~~~~qG~y~eAe~l~  215 (441)
                          ..++.+++.+|..+|++++|..++++++.+....... +...      ... .......+.++ .+|++++|+.+|
T Consensus       132 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~A~~~~  204 (368)
T 1fch_A          132 ----QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL-VTPAEEGAGGAGL-GPSKRILGSLL-SDSLFLEVKELF  204 (368)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG-CC----------------CTTHHHH-HHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHHHHHhhhhcc-cHHHHHHHHHh-hcccHHHHHHHH
Confidence                3478889999999999999999999987653221100 0000      000 00000234455 899999999999


Q ss_pred             HhhhhccCC--chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549          216 KGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM  293 (441)
Q Consensus       216 ~~aL~~~~~--~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q  293 (441)
                      ++++...+.  ...+..++|.++..+|+|++|+.+|++++.+   ...                 ...+++++|.+|..+
T Consensus       205 ~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~-----------------~~~~~~~l~~~~~~~  264 (368)
T 1fch_A          205 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPN-----------------DYLLWNKLGATLANG  264 (368)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHT
T ss_pred             HHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcC-----------------CHHHHHHHHHHHHHc
Confidence            999996555  5667788999999999999999999999988   111                 124678999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC-CC---CCcchH
Q 013549          294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PL---ESEGVE  369 (441)
Q Consensus       294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~-~~---~~~~~~  369 (441)
                      |+|++|+.+|++++.+        +|....++.++|.+|..+|++++|      ...|++++++.... ++   .++...
T Consensus       265 g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~~~~~~~  330 (368)
T 1fch_A          265 NQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREA------VEHFLEALNMQRKSRGPRGEGGAMSE  330 (368)
T ss_dssp             TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHTC------CCCCCH
T ss_pred             CCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCCCCCCccccccchhh
Confidence            9999999999999987        466678899999999999999987      89999999997432 22   234556


Q ss_pred             hhhccHHHHHHHhccHHHHHHHhh
Q 013549          370 TKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       370 ~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      ....+++.++...|++++|.....
T Consensus       331 ~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          331 NIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             HHHHHHHHHHHHhCChHhHHHhHH
Confidence            677889999999998888777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.90  E-value=5.7e-22  Score=190.19  Aligned_cols=269  Identities=14%  Similarity=0.126  Sum_probs=215.8

Q ss_pred             HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh
Q 013549           65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV  144 (441)
Q Consensus        65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~  144 (441)
                      +...|..+.    ..|+|++|+.++++++...        |....++..++.++..+|++++|+..+++++...+..   
T Consensus        25 ~~~~a~~~~----~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---   89 (330)
T 3hym_B           25 VVSLAERHY----YNCDFKMCYKLTSVVMEKD--------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN---   89 (330)
T ss_dssp             HHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---
T ss_pred             HHHHHHHHH----HcCCHHHHHHHHHHHHHcC--------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---
Confidence            445555552    2489999999999999743        3334567888999999999999999999998876543   


Q ss_pred             hHHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Q 013549          145 RVAAMEALAGLYLQLG-QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG  223 (441)
Q Consensus       145 ~~~al~~La~l~~~~G-~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~  223 (441)
                       ..++..++.++..+| ++++|..++++++.+.    +..        ..+....|.++..+|+|++|+..|++++...+
T Consensus        90 -~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~----~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  156 (330)
T 3hym_B           90 -PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE----KTY--------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK  156 (330)
T ss_dssp             -THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC----TTC--------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----Ccc--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence             236788999999999 8999999999886432    111        11223467778899999999999999999655


Q ss_pred             CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          224 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL  303 (441)
Q Consensus       224 ~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~  303 (441)
                      ....+...+|.++..+|++++|+.+|++++++.   ..                 ...+++++|.+|..+|+|++|+.+|
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~  216 (330)
T 3hym_B          157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PE-----------------DPFVMHEVGVVAFQNGEWKTAEKWF  216 (330)
T ss_dssp             TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CC-----------------ChHHHHHHHHHHHHcccHHHHHHHH
Confidence            555677779999999999999999999999871   11                 1245789999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC-chHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHh
Q 013549          304 TRTLTKTEELFGSHH-PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR  382 (441)
Q Consensus       304 ~rAL~i~e~~lG~~H-P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~  382 (441)
                      ++++.+..+.-++.. |....++.++|.+|..+|++++|      ...|++++++.    ++++   ..+.+++.++..+
T Consensus       217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~a~~~~----~~~~---~~~~~la~~~~~~  283 (330)
T 3hym_B          217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA------LDYHRQALVLI----PQNA---STYSAIGYIHSLM  283 (330)
T ss_dssp             HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----TTCS---HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHhhC----ccch---HHHHHHHHHHHHh
Confidence            999999988766554 56678999999999999999987      89999999873    2333   4667899999999


Q ss_pred             ccHHHHHHHhhc
Q 013549          383 GGYAEALSVQQN  394 (441)
Q Consensus       383 g~yaeal~~~~~  394 (441)
                      |+|++|+....+
T Consensus       284 g~~~~A~~~~~~  295 (330)
T 3hym_B          284 GNFENAVDYFHT  295 (330)
T ss_dssp             TCHHHHHHHHHT
T ss_pred             ccHHHHHHHHHH
Confidence            999999987643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.90  E-value=1.5e-22  Score=199.67  Aligned_cols=252  Identities=13%  Similarity=0.084  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      +.+..+.++|..+.+    .|+|++|+.+|++++.+.        |....++.++|.+|..+|+|++|++.|++++.+.+
T Consensus        97 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  164 (365)
T 4eqf_A           97 GDAEAWQFLGITQAE----NENEQAAIVALQRCLELQ--------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP  164 (365)
T ss_dssp             TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred             CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence            335567788888743    689999999999999863        44577899999999999999999999999998877


Q ss_pred             hhhhhh------HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549          140 SILGVR------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES  213 (441)
Q Consensus       140 ~~lg~~------~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~  213 (441)
                      ......      ......++.++..+|++++|..++++++.+.....  .        .......|.++..+|+|++|+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~--------~~~~~~l~~~~~~~g~~~~A~~  234 (365)
T 4eqf_A          165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI--D--------PDLQTGLGVLFHLSGEFNRAID  234 (365)
T ss_dssp             HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC--C--------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc--C--------HHHHHHHHHHHHHCCCHHHHHH
Confidence            642211      22345568889999999999999999986532110  0        1122346788889999999999


Q ss_pred             HHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549          214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM  293 (441)
Q Consensus       214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q  293 (441)
                      +|++++...+....+..++|.+|..+|+|++|+..|++++++   ...                 ...++.+||.+|..+
T Consensus       235 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~-----------------~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          235 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPG-----------------FIRSRYNLGISCINL  294 (365)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-----------------chHHHHHHHHHHHHC
Confidence            999999977777778889999999999999999999999998   111                 124678999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhCCCCchH----HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          294 GNFGDAEEILTRTLTKTEELFGSHHPKV----GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       294 G~y~eAe~l~~rAL~i~e~~lG~~HP~v----a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      |+|++|..+|++++.+..+..|+.||..    ...+.+|+.+|..+|+.+.+      +...++++++++
T Consensus       295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a------~~~~~~~l~~~~  358 (365)
T 4eqf_A          295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF------QAANLGDLDVLL  358 (365)
T ss_dssp             TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH------HHHHTTCCGGGT
T ss_pred             CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH------HHHHHhhHHHHH
Confidence            9999999999999999999999888776    67899999999999999876      778888888874

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.2e-22  Score=206.85  Aligned_cols=299  Identities=12%  Similarity=0.004  Sum_probs=210.0

Q ss_pred             CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCC-CCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549           55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ-LAESWRGISLLAMSTLLYESGNYVEAIEKLQK  133 (441)
Q Consensus        55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g-~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r  133 (441)
                      --+++..+...+++|.++.    .+|+|++|+..|++|+++.....+ ..||..+.+++|+|.+|..+|+|++|+..|++
T Consensus        44 ~~~~~~~a~~yn~Lg~~~~----~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k  119 (472)
T 4g1t_A           44 FQNREFKATMCNLLAYLKH----LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK  119 (472)
T ss_dssp             SCC---CCHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hCCChhHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            4456666778888999983    479999999999999998776655 45899999999999999999999999999999


Q ss_pred             HHHhhhhhhhh----hHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC
Q 013549          134 VENFKNSILGV----RVAAMEALAGLYLQ--LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN  207 (441)
Q Consensus       134 al~i~~~~lg~----~~~al~~La~l~~~--~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~  207 (441)
                      ++.+.+...+.    ...++.+++..+..  .++|++|..++++++.+-    |..+   ......  +.........|+
T Consensus       120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~~~---~~~~~~--~~~~~~l~~~~~  190 (472)
T 4g1t_A          120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNP---EFTSGL--AIASYRLDNWPP  190 (472)
T ss_dssp             HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TTCH---HHHHHH--HHHHHHHHHSCC
T ss_pred             HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCH---HHHHHH--HHHHHHhcCchH
Confidence            99998764332    12345555554444  457899999999998653    2111   111111  111112236899


Q ss_pred             HHHHHHHHHhhhhccCCchHHHHHHH----HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549          208 LESAESFFKGLQEEEGCTGSAALSYG----EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT  283 (441)
Q Consensus       208 y~eAe~l~~~aL~~~~~~~~~a~~~a----~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al  283 (441)
                      +++|...|++++...+....+..+++    .++...|++++|+.+|++++.+   ...                 ...++
T Consensus       191 ~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~-----------------~~~~~  250 (472)
T 4g1t_A          191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APG-----------------VTDVL  250 (472)
T ss_dssp             CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSS-----------------CHHHH
T ss_pred             HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---Ccc-----------------HHHHH
Confidence            99999999999996555555544444    4455678999999999999988   111                 12457


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhh------hhHHHHHHHHHHHHH
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS------ALLIQEGLYRRALEF  357 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~------~~~~Ae~ly~rAL~i  357 (441)
                      .++|.+|..+|++++|.+.|++|+.+        +|+.+.++.+||.+|..++....+.      ....+...+++|++.
T Consensus       251 ~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  322 (472)
T 4g1t_A          251 RSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH  322 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence            89999999999999999999999986        7888899999999998876654320      111234555666665


Q ss_pred             hhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          358 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       358 ~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                      ++.....+|.......+++.++..+|+|++|+..+++
T Consensus       323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k  359 (472)
T 4g1t_A          323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK  359 (472)
T ss_dssp             HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence            5322212334445667899999999999999887643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=5.2e-21  Score=184.92  Aligned_cols=304  Identities=13%  Similarity=0.052  Sum_probs=233.7

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      +..+.++|..+.    ..|+|++|+.+|++++...        |....++.++|.+|..+|+|++|+..|++++.+.+..
T Consensus         3 ~~~~~~~~~~~~----~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   70 (359)
T 3ieg_A            3 VEKHLELGKKLL----AAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF   70 (359)
T ss_dssp             HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence            345667777773    3689999999999999743        3345789999999999999999999999999886643


Q ss_pred             hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH-------HHHHHHHHHHHcCCHHHHHHH
Q 013549          142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR-------ANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       142 lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~-------a~al~gl~~~~qG~y~eAe~l  214 (441)
                      .    .++..++.++..+|++++|..++++++.+.    +............       .....+.++..+|+|++|..+
T Consensus        71 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~  142 (359)
T 3ieg_A           71 T----AARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF  142 (359)
T ss_dssp             H----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             c----hHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            2    467889999999999999999999886432    1000111111100       011235677899999999999


Q ss_pred             HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549          215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG  294 (441)
Q Consensus       215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG  294 (441)
                      |++++...+....+...+|.++..+|++++|+..|++++.+   ...                 ...++.++|.+|..+|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~la~~~~~~~  202 (359)
T 3ieg_A          143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL---KSD-----------------NTEAFYKISTLYYQLG  202 (359)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CSC-----------------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC-----------------CHHHHHHHHHHHHHcC
Confidence            99999976667778888999999999999999999999976   111                 1245789999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH---------HHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCC
Q 013549          295 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLT---------CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES  365 (441)
Q Consensus       295 ~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~---------nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~  365 (441)
                      ++++|...|++++.+     .++++.+...+.         ++|.+|..+|++++|      ...|++++++.    |+.
T Consensus       203 ~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~----~~~  267 (359)
T 3ieg_A          203 DHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA------TSKYESVMKTE----PSV  267 (359)
T ss_dssp             CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----CSS
T ss_pred             CHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC----CCc
Confidence            999999999999964     578887665544         459999999999987      89999998874    333


Q ss_pred             cc-hHhhhccHHHHHHHhccHHHHHHHhhchhh----HHHHHHHHHHHHHhccChhHHHH
Q 013549          366 EG-VETKVDRTDIVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEA  420 (441)
Q Consensus       366 ~~-~~~~l~nl~~~~~~~g~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~~~~~  420 (441)
                      +. ....+.+++.++..+|+|++|+.....-..    ..+.+...+..+++.+++..|..
T Consensus       268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  327 (359)
T 3ieg_A          268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ  327 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            33 234456789999999999999987644322    25677788888888888766654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.89  E-value=2.2e-21  Score=184.53  Aligned_cols=275  Identities=15%  Similarity=0.127  Sum_probs=198.5

Q ss_pred             ccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh----hhhHHHHHHHHHHHHhcCCcchhHHHHH
Q 013549           95 TQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL----GVRVAAMEALAGLYLQLGQDDTSSVVAD  170 (441)
Q Consensus        95 i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l----g~~~~al~~La~l~~~~G~~~~A~~l~~  170 (441)
                      ......|+++|..+.++.++|.+|..+|+|++|+..|++++.+.....    .....++..++.+|..+|++++|..+++
T Consensus        14 ~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~   93 (311)
T 3nf1_A           14 LYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLN   93 (311)
T ss_dssp             GSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            345567899999999999999999999999999999999999876543    1234578889999999999999999999


Q ss_pred             HHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc------c--CCchHHHHHHHHHHHHccCh
Q 013549          171 KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE------E--GCTGSAALSYGEYLHATRNF  242 (441)
Q Consensus       171 ~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~------~--~~~~~~a~~~a~~~~~qG~y  242 (441)
                      +++.+.....+...    ..........+.++..+|+|++|+.+|++++..      .  +....+..++|.++..+|+|
T Consensus        94 ~al~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  169 (311)
T 3nf1_A           94 DALAIREKTLGKDH----PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY  169 (311)
T ss_dssp             HHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHhCCCC----hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence            99998766521110    111223345677888999999999999999982      1  22234456789999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCCchH
Q 013549          243 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL-FGSHHPKV  321 (441)
Q Consensus       243 ~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~-lG~~HP~v  321 (441)
                      ++|+.+|++++++..+..+        .  .++.  ...++.+||.+|..+|+|++|+++|++++.+..+. +|..+|..
T Consensus       170 ~~A~~~~~~a~~~~~~~~~--------~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  237 (311)
T 3nf1_A          170 EEVEYYYQRALEIYQTKLG--------P--DDPN--VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN  237 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTSC--------T--TCHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHhC--------C--CCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence            9999999999999644322        0  0121  34568899999999999999999999999997765 78888887


Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          322 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       322 a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      .....+++.++...+.+..+..+.++...++++       ...+|.....+.+++.++..+|+|++|+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  301 (311)
T 3nf1_A          238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC-------KVDSPTVTTTLKNLGALYRRQGKFEAAETLE  301 (311)
T ss_dssp             CCHHHHHHHHHHC-------CCSCCCC----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc-------CCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            777777777777766666543333333344333       3466778888899999999999998887765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=7.4e-22  Score=193.46  Aligned_cols=284  Identities=15%  Similarity=0.113  Sum_probs=214.4

Q ss_pred             ChhhHHHHHH-HHHHhhhccccCCCCCchh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 013549           78 SDESYSQGML-VLEQCLSTQPSDGQLAESW-RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGL  155 (441)
Q Consensus        78 ~~g~y~eAl~-~~eqaL~i~~~~~g~~h~~-~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l  155 (441)
                      ..|+|++|+. .|++++.+..     +.|. .+..+.++|.++..+|+|++|+..|++++.+.+..    ..++..++.+
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~  107 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEE-----ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTT  107 (368)
T ss_dssp             ---------CHHHHCCCCCCS-----SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCC-----CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Confidence            3578999999 9999997653     3332 35668899999999999999999999999876543    3477889999


Q ss_pred             HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHH-----
Q 013549          156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAAL-----  230 (441)
Q Consensus       156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~-----  230 (441)
                      |..+|++++|..++++++.+.    +..        ..+....+.++..+|++++|..+|++++...+.......     
T Consensus       108 ~~~~g~~~~A~~~~~~al~~~----~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T 1fch_A          108 QAENEQELLAISALRRCLELK----PDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG  175 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred             HHHCcCHHHHHHHHHHHHhcC----CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            999999999999999997653    111        112234677888999999999999999984332222211     


Q ss_pred             -----------HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549          231 -----------SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA  299 (441)
Q Consensus       231 -----------~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA  299 (441)
                                 .++.++ .+|++++|+.+|++++.+.   ..     ..          ...++.++|.+|..+|+|++|
T Consensus       176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~---p~-----~~----------~~~~~~~l~~~~~~~g~~~~A  236 (368)
T 1fch_A          176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD---PT-----SI----------DPDVQCGLGVLFNLSGEYDKA  236 (368)
T ss_dssp             ----------CTTHHHH-HHHHHHHHHHHHHHHHHHS---TT-----SC----------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC---cC-----cc----------cHHHHHHHHHHHHHcCCHHHH
Confidence                       345555 8999999999999999881   11     00          124578999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHH
Q 013549          300 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA  379 (441)
Q Consensus       300 e~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~  379 (441)
                      +.+|++++.+        +|....++.++|.+|..+|++++|      +..|++++++.       |+......+++.++
T Consensus       237 ~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~-------~~~~~~~~~l~~~~  295 (368)
T 1fch_A          237 VDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEA------VAAYRRALELQ-------PGYIRSRYNLGISC  295 (368)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCcHHHHHHHHHHH
Confidence            9999999987        456667899999999999999987      89999999872       33345677899999


Q ss_pred             HHhccHHHHHHHhhchhhH---------------HHHHHHHHHHHHhccChhHHHHhc
Q 013549          380 LARGGYAEALSVQQNRKDE---------------GERMKRWAEAAWRNRRVSLAEALN  422 (441)
Q Consensus       380 ~~~g~yaeal~~~~~r~~e---------------ae~~~~~a~~~~~~~r~~~~~~l~  422 (441)
                      ..+|+|++|+.....-...               ...|...+..+.+.+++..++++.
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  353 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD  353 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence            9999999998865332111               466777888888889988888775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.89  E-value=6.9e-21  Score=190.64  Aligned_cols=248  Identities=10%  Similarity=0.043  Sum_probs=203.1

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG---VRVAAMEALAG  154 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg---~~~~al~~La~  154 (441)
                      ..|+|++|+..|++++.+....  ++.+..+.++.+||.+|..+|+|++|+..+++++++.+...+   ....++++++.
T Consensus       113 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  190 (378)
T 3q15_A          113 DQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG  190 (378)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            4689999999999999988765  467899999999999999999999999999999999876432   12457889999


Q ss_pred             HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----ccCCchHHH
Q 013549          155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-----EEGCTGSAA  229 (441)
Q Consensus       155 l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~~~~~~~~a  229 (441)
                      +|..+|++++|..++++++++.......      .....+....|.++..+|+|++|+.+|++++.     ..+....+.
T Consensus       191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  264 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEAALELAMDIQND------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL  264 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence            9999999999999999999998765421      12223334568889999999999999999999     444445667


Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      .++|.++..+|++++|..+|++|+++.   ... +.         +.  ....+..|+.+|...|+.    ..+.+|+.+
T Consensus       265 ~~la~~~~~~g~~~~A~~~~~~al~~~---~~~-~~---------~~--~~~~~~~l~~ly~~~~~~----~~~~~al~~  325 (378)
T 3q15_A          265 FGLSWTLCKAGQTQKAFQFIEEGLDHI---TAR-SH---------KF--YKELFLFLQAVYKETVDE----RKIHDLLSY  325 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC---CTT-CC---------SC--HHHHHHHHHHHHSSSCCH----HHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHH---HHc-CC---------HH--HHHHHHHHHHHHhCCCcH----HHHHHHHHH
Confidence            888999999999999999999999993   220 01         11  123467899999999995    566667777


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          310 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       310 ~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      +++  ...+|.+...+.+||.+|..+|++++|      ...|++++++.+.
T Consensus       326 ~~~--~~~~~~~~~~~~~la~~y~~~g~~~~A------~~~~~~al~~~~~  368 (378)
T 3q15_A          326 FEK--KNLHAYIEACARSAAAVFESSCHFEQA------AAFYRKVLKAQED  368 (378)
T ss_dssp             HHH--TTCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHH
T ss_pred             HHh--CCChhHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHH
Confidence            766  457889999999999999999999987      8899999999753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=1.5e-20  Score=181.62  Aligned_cols=282  Identities=11%  Similarity=0.044  Sum_probs=213.6

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh--
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN--  139 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~--  139 (441)
                      ...+.++|..+.    ..|+|++|+.++++++.+.        |....++..+|.+|..+|+|++|+..|++++.+.+  
T Consensus        37 ~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  104 (359)
T 3ieg_A           37 YIAYYRRATVFL----AMGKSKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE  104 (359)
T ss_dssp             HHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH
T ss_pred             HHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Confidence            346677888873    3689999999999999863        33347899999999999999999999999998876  


Q ss_pred             -hhhhhh--------HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549          140 -SILGVR--------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES  210 (441)
Q Consensus       140 -~~lg~~--------~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e  210 (441)
                       ......        ......++.++..+|++++|..++++++++.    +..        .......+.++..+|++++
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~  172 (359)
T 3ieg_A          105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC----VWD--------AELRELRAECFIKEGEPRK  172 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHTTCHHH
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCc--------hHHHHHHHHHHHHCCCHHH
Confidence             432111        0112334788999999999999999887542    111        1122346778889999999


Q ss_pred             HHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549          211 AESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE  290 (441)
Q Consensus       211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly  290 (441)
                      |+..|++++...+....+...+|.++..+|++++|...|++++++.   ..    +.... ........+....++|.++
T Consensus       173 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~-~~~~~~~~~~~~~~~a~~~  244 (359)
T 3ieg_A          173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QD----HKRCF-AHYKQVKKLNKLIESAEEL  244 (359)
T ss_dssp             HHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT----CHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cc----chHHH-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999777777888899999999999999999999999872   11    00000 0000000112245679999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549          291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE  369 (441)
Q Consensus       291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~  369 (441)
                      ..+|+|++|..+|++++.+.     +++|.. ...+.++|.+|..+|++++|      ...|++++++.       |+..
T Consensus       245 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-------~~~~  306 (359)
T 3ieg_A          245 IRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEA------IRICSEVLQME-------PDNV  306 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCH
T ss_pred             HHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC-------cccH
Confidence            99999999999999999864     555554 35688999999999999987      89999999872       3333


Q ss_pred             hhhccHHHHHHHhccHHHHHHHhh
Q 013549          370 TKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       370 ~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      ..+.+++.++...|+|++|+....
T Consensus       307 ~~~~~~~~~~~~~g~~~~A~~~~~  330 (359)
T 3ieg_A          307 NALKDRAEAYLIEEMYDEAIQDYE  330 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            567789999999999999988763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.88  E-value=1.2e-20  Score=190.24  Aligned_cols=284  Identities=12%  Similarity=0.065  Sum_probs=215.9

Q ss_pred             hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549           59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~  138 (441)
                      |+.+..+.++|..+.    ..|+|++|+.+|++++.+.        |....++.++|.+|..+|+|++|+..|++++.+.
T Consensus        57 p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  124 (450)
T 2y4t_A           57 PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN  124 (450)
T ss_dssp             TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             CccHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            334566777888873    3689999999999999853        3446789999999999999999999999998876


Q ss_pred             hhhh---hhh--------HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC
Q 013549          139 NSIL---GVR--------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN  207 (441)
Q Consensus       139 ~~~l---g~~--------~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~  207 (441)
                      +...   ...        ......++..+...|++++|..++++++.+.    +..        .......+.++..+|+
T Consensus       125 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~--------~~~~~~l~~~~~~~g~  192 (450)
T 2y4t_A          125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VWD--------AELRELRAECFIKEGE  192 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHTTC
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--------hHHHHHHHHHHHHCCC
Confidence            5432   110        0123445777999999999999999887542    111        1122346778889999


Q ss_pred             HHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch-hHHHHHHHHHH
Q 013549          208 LESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL-EEVALAATFAL  286 (441)
Q Consensus       208 y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~-~~~~~~al~nL  286 (441)
                      +++|..+|++++...+....+...+|.+|..+|++++|+.+|++++.+.   ..     ... ..... .-..+....++
T Consensus       193 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~-----~~~-~~~~~~~~~~~~~~~~~  263 (450)
T 2y4t_A          193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QD-----HKR-CFAHYKQVKKLNKLIES  263 (450)
T ss_dssp             GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----CHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----hHH-HHHHHHHHHHHHHHHHH
Confidence            9999999999999666667788889999999999999999999999871   11     100 00000 00001123456


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCC
Q 013549          287 GQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES  365 (441)
Q Consensus       287 g~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~  365 (441)
                      |.++..+|+|++|.++|++++.+     .+++|.. ...+.++|.+|..+|++++|      +..|++++++.       
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~-------  325 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEA------IRVCSEVLQME-------  325 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHC-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC-------
Confidence            99999999999999999999984     4667765 57899999999999999987      89999999872       


Q ss_pred             cchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549          366 EGVETKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       366 ~~~~~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      |+....+.+++.++..+|+|++|+....
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~  353 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYE  353 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3334567789999999999999988763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.88  E-value=4e-20  Score=183.33  Aligned_cols=304  Identities=13%  Similarity=0.030  Sum_probs=221.0

Q ss_pred             ccCCCchHHHHHHH-HHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHH
Q 013549           53 INGLNSNPVVLQMI-NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKL  131 (441)
Q Consensus        53 ~~g~~h~~~a~~m~-n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~  131 (441)
                      |...+.|..-..+. ..+..+.    ..|++++|+.++++++....   ..+....+.+++++|.+|..+|+|++|+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~   76 (373)
T 1hz4_A            4 IKDIREDTMHAEFNALRAQVAI----NDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALM   76 (373)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhccHHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            43333444433333 3555542    36899999999999998662   2234557889999999999999999999999


Q ss_pred             HHHHHhhhhhhhhh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCH
Q 013549          132 QKVENFKNSILGVR---VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNL  208 (441)
Q Consensus       132 ~ral~i~~~~lg~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y  208 (441)
                      ++++.+.+.. +..   ..++.+++.++..+|++++|..++++++++.........    ..........+.++..+|++
T Consensus        77 ~~al~~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~  151 (373)
T 1hz4_A           77 QQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL----PMHEFLVRIRAQLLWAWARL  151 (373)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS----THHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhc-CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHhcCH
Confidence            9999988764 332   346788999999999999999999999999876552100    11122233467788899999


Q ss_pred             HHHHHHHHhhhhccC-----CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549          209 ESAESFFKGLQEEEG-----CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT  283 (441)
Q Consensus       209 ~eAe~l~~~aL~~~~-----~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al  283 (441)
                      ++|+.+|++++...+     ....+..+++.++..+|++++|..++++++.+..   .      .+  .  +........
T Consensus       152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~---~------~~--~--~~~~~~~~~  218 (373)
T 1hz4_A          152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG---N------GK--Y--HSDWISNAN  218 (373)
T ss_dssp             HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---T------SC--C--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---c------cC--c--chhHHHHHH
Confidence            999999999998211     1233456789999999999999999999999842   1      01  0  000111112


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCC
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL  363 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~  363 (441)
                      ..++.++..+|++++|+.++++++.+.   .+..|.. ...+.++|.+|..+|++++|      ...+++++++....+ 
T Consensus       219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~-~~~~~~la~~~~~~g~~~~A------~~~l~~a~~~~~~~~-  287 (373)
T 1hz4_A          219 KVRVIYWQMTGDKAAAANWLRHTAKPE---FANNHFL-QGQWRNIARAQILLGEFEPA------EIVLEELNENARSLR-  287 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCCCC---CTTCGGG-HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCCC---CCcchhh-HHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHhCc-
Confidence            245677999999999999999998643   2222332 33578999999999999987      899999999986533 


Q ss_pred             CCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          364 ESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       364 ~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      ..+.......+++.++..+|++++|....
T Consensus       288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          288 LMSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            22344456668899999999999998765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.88  E-value=5.5e-21  Score=183.12  Aligned_cols=290  Identities=13%  Similarity=0.011  Sum_probs=216.2

Q ss_pred             cCCCch-HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 013549           54 NGLNSN-PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ  132 (441)
Q Consensus        54 ~g~~h~-~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~  132 (441)
                      +.++.| ..+..+.+.|..+.    ..|+|++|+.+|++++...        |....++..+|.++..+|+|++|+..|+
T Consensus        12 ~~~~~~~~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~   79 (327)
T 3cv0_A           12 FEANNPYMYHENPMEEGLSML----KLANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEKDGLAIIALN   79 (327)
T ss_dssp             CCSSCGGGGSSCHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhccchhhhHHHHHHHHHHH----HhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344444 34455677788773    3689999999999999743        4456788999999999999999999999


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhh---HhHHHHHHHH-HHHHcCCH
Q 013549          133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAV---NSRANAVKGL-VELAHGNL  208 (441)
Q Consensus       133 ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l---~~~a~al~gl-~~~~qG~y  208 (441)
                      +++.+.+..    ..++..++.+|..+|++++|..++++++.+....... +......   ......+.+. ++..+|++
T Consensus        80 ~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (327)
T 3cv0_A           80 HARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL-GSVNLQADVDIDDLNVQSEDFFFAAPNEY  154 (327)
T ss_dssp             HHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------CCTTSHHHH
T ss_pred             HHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH-HHHHhHHHHHHHHHHHHHHhHHHHHcccH
Confidence            998886543    2467889999999999999999999987553222110 0000000   0000001022 36689999


Q ss_pred             HHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH
Q 013549          209 ESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ  288 (441)
Q Consensus       209 ~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~  288 (441)
                      ++|..+|++++...+....+...+|.++..+|++++|+.+|++++++   ...                 ...++.++|.
T Consensus       155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~l~~  214 (327)
T 3cv0_A          155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPD-----------------DAQLWNKLGA  214 (327)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCC-----------------cHHHHHHHHH
Confidence            99999999999966666777888999999999999999999999987   111                 1235789999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC-CCCCcc
Q 013549          289 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESEG  367 (441)
Q Consensus       289 ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~-~~~~~~  367 (441)
                      +|..+|+|++|..+|++++.+        +|....++.++|.+|..+|++++|      ...|++++++.... .+.+..
T Consensus       215 ~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~~~~~~~~~~  280 (327)
T 3cv0_A          215 TLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLA------AKQLVRAIYMQVGGTTPTGEA  280 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHTTSCC-----
T ss_pred             HHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhCCccccccccc
Confidence            999999999999999999986        345556788999999999999987      89999999987432 122111


Q ss_pred             ----hHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          368 ----VETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       368 ----~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                          ......+++.++...|++++|......
T Consensus       281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                455677899999999999988887643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.88  E-value=1.6e-20  Score=196.60  Aligned_cols=284  Identities=13%  Similarity=0.123  Sum_probs=227.0

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|++++|+.+|++++..         |....+++.++..|..+|+|++|++.|++++...+..    ..++..++.++.
T Consensus       284 ~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~  350 (597)
T 2xpi_A          284 HEDELRRAEDYLSSINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN----LDVYPLHLASLH  350 (597)
T ss_dssp             THHHHHHHHHHHHTSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----CTTHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc----HHHHHHHHHHHH
Confidence            578999999999999864         2346789999999999999999999999998776542    235778889999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                      .+|++++|..++++++..    .+..        .......+.++..+|++++|..+|++++...+....+...++.+|.
T Consensus       351 ~~g~~~~A~~~~~~~~~~----~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  418 (597)
T 2xpi_A          351 ESGEKNKLYLISNDLVDR----HPEK--------AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA  418 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHH----CTTS--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhh----Cccc--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999888632    2111        1122345777889999999999999999966666677788999999


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      .+|++++|+.+|++++++.   ..     .            ..++++||.+|..+|++++|+++|++++.+     .++
T Consensus       419 ~~g~~~~A~~~~~~~~~~~---~~-----~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~  473 (597)
T 2xpi_A          419 IEGEHDQAISAYTTAARLF---QG-----T------------HLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQY  473 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHTT---TT-----C------------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCC
T ss_pred             HcCCHHHHHHHHHHHHHhC---cc-----c------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Confidence            9999999999999998761   11     1            135789999999999999999999999975     344


Q ss_pred             CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcc-hHhhhccHHHHHHHhccHHHHHHHhhchh
Q 013549          318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYAEALSVQQNRK  396 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~-~~~~l~nl~~~~~~~g~yaeal~~~~~r~  396 (441)
                      +|   .+++++|.+|..+|++++|      +.+|++++++.... +..|+ ....+.+++.++..+|+|++|+....+-.
T Consensus       474 ~~---~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (597)
T 2xpi_A          474 DP---LLLNELGVVAFNKSDMQTA------INHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL  543 (597)
T ss_dssp             CH---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHS-CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             Ch---HHHHHHHHHHHHhCCHHHH------HHHHHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44   6699999999999999987      89999999997543 23444 36678899999999999999998764422


Q ss_pred             h----HHHHHHHHHHHHHhccChhHHHHh
Q 013549          397 D----EGERMKRWAEAAWRNRRVSLAEAL  421 (441)
Q Consensus       397 ~----eae~~~~~a~~~~~~~r~~~~~~l  421 (441)
                      .    ..+.+...+..+++.+++..+...
T Consensus       544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  572 (597)
T 2xpi_A          544 LLSTNDANVHTAIALVYLHKKIPGLAITH  572 (597)
T ss_dssp             HHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            2    256777788888888888776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.88  E-value=4.7e-21  Score=195.13  Aligned_cols=264  Identities=16%  Similarity=0.135  Sum_probs=196.2

Q ss_pred             hhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-----hHHH
Q 013549           74 RSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-----RVAA  148 (441)
Q Consensus        74 ~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-----~~~a  148 (441)
                      .|.|..++++.++..+++.+.......  +++..+..+++||.+|..+|+|++|++.|++|+++.+...+.     ...+
T Consensus        19 hf~w~l~~~~~~l~~~e~~~~~~~~~~--~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~   96 (472)
T 4g1t_A           19 HFTWNLMEGENSLDDFEDKVFYRTEFQ--NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVT   96 (472)
T ss_dssp             TTTSCTTTTCCCHHHHHHHHHHHTTSC--C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHH
T ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence            366677788899999999888776665  455678899999999999999999999999999987764332     2457


Q ss_pred             HHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC-cchhhhhhHhHHHHHHHHHHH--HcCCHHHHHHHHHhhhhccCCc
Q 013549          149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVEL--AHGNLESAESFFKGLQEEEGCT  225 (441)
Q Consensus       149 l~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~-~~~~~~~l~~~a~al~gl~~~--~qG~y~eAe~l~~~aL~~~~~~  225 (441)
                      ++|++.+|..+|++++|..++++++.+....... +...     .......|.++.  .+++|++|+.+|++++...+..
T Consensus        97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~  171 (472)
T 4g1t_A           97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES-----PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN  171 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh-----HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence            8999999999999999999999999998765521 1111     111223454444  4668999999999999977777


Q ss_pred             hHHHHHHHHHH---HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHH----HHHHHcCCHHH
Q 013549          226 GSAALSYGEYL---HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG----QLEAHMGNFGD  298 (441)
Q Consensus       226 ~~~a~~~a~~~---~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg----~ly~~qG~y~e  298 (441)
                      +.+..+++.++   ...|++++|++.|++|+++   ...     .            ..+..++|    .++..+|++++
T Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l---~p~-----~------------~~~~~~l~~~~~~~~~~~~~~~~  231 (472)
T 4g1t_A          172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL---NPD-----N------------QYLKVLLALKLHKMREEGEEEGE  231 (472)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH---CSS-----C------------HHHHHHHHHHHHHCC------CH
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc---CCc-----c------------hHHHHHHHHHHHHHHhhhhHHHH
Confidence            77777777664   4568889999999999998   111     1            12334454    45566789999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHH
Q 013549          299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV  378 (441)
Q Consensus       299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~  378 (441)
                      |+++|++++.+        +|....++.++|.+|..+|++++|      ...|++|+++.       |+......+++.+
T Consensus       232 a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~-------p~~~~~~~~lg~~  290 (472)
T 4g1t_A          232 GEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKA------IELLKKALEYI-------PNNAYLHCQIGCC  290 (472)
T ss_dssp             HHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-------TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--------CccHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHhC-------CChHHHHHHHHHH
Confidence            99999999875        566677899999999999999987      89999998873       4445667788888


Q ss_pred             HHHhccH
Q 013549          379 ALARGGY  385 (441)
Q Consensus       379 ~~~~g~y  385 (441)
                      |..++.+
T Consensus       291 y~~~~~~  297 (472)
T 4g1t_A          291 YRAKVFQ  297 (472)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8765443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.88  E-value=1.8e-22  Score=209.68  Aligned_cols=122  Identities=8%  Similarity=0.055  Sum_probs=108.1

Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      ..+|+|+||+++|+++|+|.   +.     .+|++|  |.  ++.+++|||.+|..||+|++|+++|+|+|+|+++++|+
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~---~~-----~lg~~H--p~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~  376 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKM---SS-----VFEDSN--VY--MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV  376 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHH---TT-----TBCTTS--HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             hhccCHHHHHHHHHHHHHHh---hC-----ccChhc--hH--HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence            35699999999999999995   33     566443  22  45689999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHH
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTD  376 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~  376 (441)
                      +||+|+.+|+|||.+|..||+|++|      +.+|+|||+|++ ..|++||.|....+||.
T Consensus       377 ~Hp~~a~~l~nLa~~~~~qg~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          377 YSLNVASMWLKLGRLYMGLENKAAG------EKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhccCHHHH------HHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999999999999999987      999999999995 67999999997776653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=7.1e-21  Score=182.56  Aligned_cols=255  Identities=13%  Similarity=0.063  Sum_probs=197.8

Q ss_pred             HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhhhhhhh
Q 013549           65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSILG  143 (441)
Q Consensus        65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG-~y~eA~e~~~ral~i~~~~lg  143 (441)
                      +..++..+.    ..|++++|+.++++++...        |....++..+|.++..+| ++++|++.|++++.+.+..  
T Consensus        59 ~~~~~~~~~----~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~--  124 (330)
T 3hym_B           59 LPVHIGTLV----ELNKANELFYLSHKLVDLY--------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY--  124 (330)
T ss_dssp             HHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC--
T ss_pred             HHHHHHHHH----HhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc--
Confidence            344555553    3579999999999999743        334567999999999999 9999999999998877653  


Q ss_pred             hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Q 013549          144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG  223 (441)
Q Consensus       144 ~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~  223 (441)
                        ..++..++.++..+|++++|..++++++.+.....            ......+.++..+|++++|+.+|++++...+
T Consensus       125 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  190 (330)
T 3hym_B          125 --GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------------LPMLYIGLEYGLTNNSKLAERFFSQALSIAP  190 (330)
T ss_dssp             --THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence              23678899999999999999999999876642211            1122367888899999999999999999766


Q ss_pred             CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          224 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL  303 (441)
Q Consensus       224 ~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~  303 (441)
                      ....+...+|.++..+|+|++|+.+|++++.+......   ....      +.  ...++.++|.+|..+|+|++|+.+|
T Consensus       191 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~------~~--~~~~~~~la~~~~~~g~~~~A~~~~  259 (330)
T 3hym_B          191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN---EVTV------DK--WEPLLNNLGHVCRKLKKYAEALDYH  259 (330)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---SCTT------TT--CCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---cccc------cH--HHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            67778889999999999999999999999999532211   1100      11  1246789999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHH
Q 013549          304 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA  379 (441)
Q Consensus       304 ~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~  379 (441)
                      ++++.+.        |....++.++|.+|..+|++++|      ...|++++++.    |+++   ....+++.++
T Consensus       260 ~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~----p~~~---~~~~~l~~~~  314 (330)
T 3hym_B          260 RQALVLI--------PQNASTYSAIGYIHSLMGNFENA------VDYFHTALGLR----RDDT---FSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHH------HHHHHTTTTTC----SCCH---HHHHHHHHHH
T ss_pred             HHHHhhC--------ccchHHHHHHHHHHHHhccHHHH------HHHHHHHHccC----CCch---HHHHHHHHHH
Confidence            9999872        44556789999999999999887      78888876552    3333   3444555555

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.88  E-value=2.4e-20  Score=186.41  Aligned_cols=249  Identities=14%  Similarity=0.126  Sum_probs=197.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549          112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA  189 (441)
Q Consensus       112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~--~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~  189 (441)
                      ..+|.++..+|+|++|++.|++++.+.+..-..  ...++.+++.+|..+|++++|..++++++++........     .
T Consensus       107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~  181 (383)
T 3ulq_A          107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN-----I  181 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH-----H
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch-----H
Confidence            348999999999999999999999886653111  235788999999999999999999999999987765311     1


Q ss_pred             hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549          190 VNSRANAVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                      ....+....|.++..+|+|++|+.+|++++..   .+..   ..+..++|.+|..+|+|++|+.+|++|+++......  
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--  259 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--
Confidence            11233445788899999999999999999982   1112   245578899999999999999999999999643211  


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhh
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSA  343 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~  343 (441)
                         .       |.  ...++.+||.+|..+|+|++|.++|++|+.+..+.   ..|.....+.+||.+|..+|++     
T Consensus       260 ---~-------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~-----  319 (383)
T 3ulq_A          260 ---L-------PS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDE-----  319 (383)
T ss_dssp             ---G-------GG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCH-----
T ss_pred             ---c-------hh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH-----
Confidence               0       11  24578999999999999999999999999999886   3455556688999999999985     


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549          344 LLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       344 ~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                           ..+++|+++++.. ...+.......+++.++..+|+|++|+..+.
T Consensus       320 -----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~  363 (383)
T 3ulq_A          320 -----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFL  363 (383)
T ss_dssp             -----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                 3577888887653 4556677778899999999999998887763

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.87  E-value=2.2e-20  Score=195.46  Aligned_cols=271  Identities=13%  Similarity=0.011  Sum_probs=217.4

Q ss_pred             hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549           59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~  138 (441)
                      |+.....+.++..+.+    .|+|++|+.+|++++...     +++   ..+++.++.+|...|++++|++.+++++...
T Consensus       302 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  369 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFV----RSRFIDVLAITTKILEID-----PYN---LDVYPLHLASLHESGEKNKLYLISNDLVDRH  369 (597)
T ss_dssp             GGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC-----TTC---CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHcC-----ccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence            4556667778888743    689999999999999754     222   3458899999999999999999999998665


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549          139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL  218 (441)
Q Consensus       139 ~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a  218 (441)
                      +..    ..+++.++.+|...|++++|..++++++++.    +.   .     .......+.++..+|++++|+.+|+++
T Consensus       370 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~  433 (597)
T 2xpi_A          370 PEK----AVTWLAVGIYYLCVNKISEARRYFSKSSTMD----PQ---F-----GPAWIGFAHSFAIEGEHDQAISAYTTA  433 (597)
T ss_dssp             TTS----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---C-----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CC---C-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            432    3477889999999999999999999987542    11   0     112234577788999999999999999


Q ss_pred             hhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549          219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD  298 (441)
Q Consensus       219 L~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e  298 (441)
                      +...+....+...++.+|..+|++++|+.+|++++++   ...                 ...+++++|.+|..+|++++
T Consensus       434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~l~~~~~~~g~~~~  493 (597)
T 2xpi_A          434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQY-----------------DPLLLNELGVVAFNKSDMQT  493 (597)
T ss_dssp             HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCC-----------------CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----------------ChHHHHHHHHHHHHhCCHHH
Confidence            9966556667788999999999999999999999987   111                 12457899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHH
Q 013549          299 AEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI  377 (441)
Q Consensus       299 Ae~l~~rAL~i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~  377 (441)
                      |+++|++++.+..+.  +.+|. ...++.++|.+|..+|++++|      +..|++++++.    |++   .....+++.
T Consensus       494 A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~----p~~---~~~~~~l~~  558 (597)
T 2xpi_A          494 AINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAA------IDALNQGLLLS----TND---ANVHTAIAL  558 (597)
T ss_dssp             HHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----SCC---HHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC----CCC---hHHHHHHHH
Confidence            999999999987754  34566 489999999999999999987      89999998873    233   346678889


Q ss_pred             HHHHhccHHHHHHHh
Q 013549          378 VALARGGYAEALSVQ  392 (441)
Q Consensus       378 ~~~~~g~yaeal~~~  392 (441)
                      ++..+|++++|+...
T Consensus       559 ~~~~~g~~~~A~~~~  573 (597)
T 2xpi_A          559 VYLHKKIPGLAITHL  573 (597)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHH
Confidence            999999998887765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.87  E-value=6.1e-22  Score=208.68  Aligned_cols=139  Identities=12%  Similarity=0.068  Sum_probs=120.5

Q ss_pred             HHHcCCHHHHHHHHHhhhh-----ccCCch---HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          202 ELAHGNLESAESFFKGLQE-----EEGCTG---SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       202 ~~~qG~y~eAe~l~~~aL~-----~~~~~~---~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                      +..||+|++|+++|+++|+     -++.|+   .+..++|.+|..||+|++|+++|++||+|+++        .+|+.| 
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~--------~lG~~H-  389 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK--------LYHHNN-  389 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HSCTTC-
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--------HcCCCC-
Confidence            3479999999999999998     233343   44578899999999999999999999999755        445322 


Q ss_pred             chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549          274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR  353 (441)
Q Consensus       274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r  353 (441)
                       |+  ++.+++|||.+|..||+|++|+++|+|||+|+++++|++||.|+.++++|+..+..+|+|++|      |.+|++
T Consensus       390 -p~--~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a------e~~~~~  460 (490)
T 3n71_A          390 -AQ--LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN------EFMYHK  460 (490)
T ss_dssp             -HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred             -HH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence             32  455789999999999999999999999999999999999999999999999999999999887      999999


Q ss_pred             HHHHh
Q 013549          354 ALEFL  358 (441)
Q Consensus       354 AL~i~  358 (441)
                      +.+-.
T Consensus       461 ~~~~~  465 (490)
T 3n71_A          461 MREAA  465 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97754

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.87  E-value=4.8e-20  Score=189.74  Aligned_cols=277  Identities=13%  Similarity=0.107  Sum_probs=203.6

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      +.+..+..+.+.|..+.+    .|+|++|+.+|++++.+.        |....++.++|.+|..+|+|++|+..|++++.
T Consensus        20 ~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   87 (537)
T 3fp2_A           20 QRQAYAVQLKNRGNHFFT----AKNFNEAIKYYQYAIELD--------PNEPVFYSNISACYISTGDLEKVIEFTTKALE   87 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHH----TTCCC-CHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345578888999999843    689999999999999854        34467899999999999999999999999998


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHH------------------------HHHhcCC-----------
Q 013549          137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ------------------------LCEKHKP-----------  181 (441)
Q Consensus       137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~------------------------i~~~~~~-----------  181 (441)
                      +.+..    ..++..++.++..+|++++|...++ .+.                        .+.....           
T Consensus        88 ~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~  162 (537)
T 3fp2_A           88 IKPDH----SKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP  162 (537)
T ss_dssp             HCTTC----HHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred             cCCch----HHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            87653    2467889999999999999988763 221                        1110000           


Q ss_pred             --------------------------------------------------------------------CcchhhhhhH--
Q 013549          182 --------------------------------------------------------------------ENYKTYGAVN--  191 (441)
Q Consensus       182 --------------------------------------------------------------------~~~~~~~~l~--  191 (441)
                                                                                          ..+.......  
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~  242 (537)
T 3fp2_A          163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA  242 (537)
T ss_dssp             CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred             hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHH
Confidence                                                                                0000000000  


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549          192 SRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC  271 (441)
Q Consensus       192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~  271 (441)
                      ..+....|..+..+|++++|+.+|++++...+. ..+...+|.++..+|+|++|+.+|++++++.   ..          
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~----------  308 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN---PE----------  308 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---TT----------
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CC----------
Confidence            011123455666788888888888888885554 5666778888888889999999998888771   11          


Q ss_pred             ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549          272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY  351 (441)
Q Consensus       272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly  351 (441)
                             ...++.++|.+|..+|+|++|+++|++++.+     .++++   .++.++|.+|..+|++++|      ...|
T Consensus       309 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~---~~~~~la~~~~~~g~~~~A------~~~~  367 (537)
T 3fp2_A          309 -------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-----NPENV---YPYIQLACLLYKQGKFTES------EAFF  367 (537)
T ss_dssp             -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCS---HHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred             -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHH------HHHH
Confidence                   1235789999999999999999999999885     34444   5688899999999999887      8889


Q ss_pred             HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      ++++++.    |+++   ....+++.++..+|+|++|+...
T Consensus       368 ~~~~~~~----~~~~---~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          368 NETKLKF----PTLP---EVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             HHHHHHC----TTCT---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhC----CCCh---HHHHHHHHHHHHhCCHHHHHHHH
Confidence            9998873    3333   35567889999999999988765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=5.2e-20  Score=170.27  Aligned_cols=234  Identities=12%  Similarity=0.019  Sum_probs=194.9

Q ss_pred             hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549           59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~  138 (441)
                      ++.+..+.++|..+.    ..|+|++|+.+|++++.+.      ++   ..++.++|.+|..+|+|++|++.+++++.+.
T Consensus         2 ~~~a~~~~~~g~~~~----~~~~~~~A~~~~~~a~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~   68 (258)
T 3uq3_A            2 GSMADKEKAEGNKFY----KARQFDEAIEHYNKAWELH------KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQG   68 (258)
T ss_dssp             HHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHS------CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHhh------cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            456788889999984    3689999999999999865      12   4679999999999999999999999999988


Q ss_pred             hhhhhh---hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          139 NSILGV---RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF  215 (441)
Q Consensus       139 ~~~lg~---~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~  215 (441)
                      +.....   ....+..++.+|..+|++++|..++++++.+...                    +.++...|++++|...|
T Consensus        69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~a~~~~  128 (258)
T 3uq3_A           69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------------ADILTKLRNAEKELKKA  128 (258)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------------hHHHHHHhHHHHHHHHH
Confidence            753111   1357888999999999999999999998754311                    23356789999999999


Q ss_pred             HhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC
Q 013549          216 KGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN  295 (441)
Q Consensus       216 ~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~  295 (441)
                      ++++...+....+...+|.++..+|+|++|+.+|++++++.   ..                 ...++.++|.+|..+|+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~-----------------~~~~~~~l~~~~~~~~~  188 (258)
T 3uq3_A          129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PE-----------------DARGYSNRAAALAKLMS  188 (258)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---cc-----------------cHHHHHHHHHHHHHhCC
Confidence            99999666566777889999999999999999999999881   11                 12457899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          296 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      |++|+.+|++++.+        .|....++.++|.+|..+|++++|      ...|++++++..
T Consensus       189 ~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~  238 (258)
T 3uq3_A          189 FPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASA------LETLDAARTKDA  238 (258)
T ss_dssp             HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHhCh
Confidence            99999999999986        355567789999999999999987      899999999974

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.86  E-value=3.2e-20  Score=174.49  Aligned_cols=250  Identities=11%  Similarity=0.079  Sum_probs=199.2

Q ss_pred             HHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh
Q 013549           64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG  143 (441)
Q Consensus        64 ~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg  143 (441)
                      .+.++|..+.    ..|+|++|+.+|++++.+.     +++   ..++.++|.+|..+|+|++|++.+++++... ....
T Consensus         5 ~~~~~a~~~~----~~~~~~~A~~~~~~~l~~~-----p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~   71 (272)
T 3u4t_A            5 VEFRYADFLF----KNNNYAEAIEVFNKLEAKK-----YNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATK   71 (272)
T ss_dssp             CHHHHHHHHH----TTTCHHHHHHHHHHHHHTT-----CCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTT
T ss_pred             HHHHHHHHHH----HhcCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-Cchh
Confidence            3567777773    4689999999999999864     223   3379999999999999999999999998833 2222


Q ss_pred             hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Q 013549          144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG  223 (441)
Q Consensus       144 ~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~  223 (441)
                      ....++.+++.+|..+|++++|..++++++++.....            ......|.++..+|+|++|+.+|++++...+
T Consensus        72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  139 (272)
T 3u4t_A           72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT  139 (272)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence            2244678999999999999999999999986532111            1223468888899999999999999999766


Q ss_pred             CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC---HHHHH
Q 013549          224 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN---FGDAE  300 (441)
Q Consensus       224 ~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~---y~eAe  300 (441)
                      ....+..++|......++|++|+..|++++++.   ..                 ...++.++|.++..+|+   +++|.
T Consensus       140 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~-----------------~~~~~~~~~~~~~~~~~~~~~~~A~  199 (272)
T 3u4t_A          140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK---PN-----------------IYIGYLWRARANAAQDPDTKQGLAK  199 (272)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-----------------CHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cc-----------------chHHHHHHHHHHHHcCcchhhHHHH
Confidence            677778888855555679999999999999981   11                 12457899999999999   99999


Q ss_pred             HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcch
Q 013549          301 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV  368 (441)
Q Consensus       301 ~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~  368 (441)
                      +.|++++.+.++.-.++.+....++.+||.+|..+|++++|      ...|++++++.    |+++..
T Consensus       200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~al~~~----p~~~~a  257 (272)
T 3u4t_A          200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA------DAAWKNILALD----PTNKKA  257 (272)
T ss_dssp             HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCHHH
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC----ccHHHH
Confidence            99999999998766555455778999999999999999987      89999999873    455543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.86  E-value=3.3e-20  Score=173.26  Aligned_cols=252  Identities=15%  Similarity=0.106  Sum_probs=193.6

Q ss_pred             HHHcCChHHHHHHHHHHHHhhhhhhhh----hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH
Q 013549          118 LYESGNYVEAIEKLQKVENFKNSILGV----RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR  193 (441)
Q Consensus       118 ~~~qG~y~eA~e~~~ral~i~~~~lg~----~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~  193 (441)
                      ....|++++|+.+|++++.+....++.    ...++.+++.+|..+|++++|..++++++++.....+...    .....
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~   86 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH----PAVAA   86 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC----HHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc----hHHHH
Confidence            457899999999999999998776532    3457889999999999999999999999999876632111    11123


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhhc--------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549          194 ANAVKGLVELAHGNLESAESFFKGLQEE--------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM  265 (441)
Q Consensus       194 a~al~gl~~~~qG~y~eAe~l~~~aL~~--------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~  265 (441)
                      .....|.++..+|+|++|+.+|++++..        .+....+..++|.++..+|+|++|+.+|++++++.....+    
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----  162 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG----  162 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC----
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----
Confidence            3345688888999999999999999982        1223455678899999999999999999999999654322    


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549          266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL-FGSHHPKVGVVLTCLALMFRNKAMQEHSSAL  344 (441)
Q Consensus       266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~-lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~  344 (441)
                          .  .+|.  ...++.+||.+|..+|+|++|+++|++++.+..+. ++..+|.....+..++..+..++.+..+   
T Consensus       163 ----~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  231 (283)
T 3edt_B          163 ----P--DDPN--VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS---  231 (283)
T ss_dssp             ----T--TCHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----
T ss_pred             ----C--CCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHH---
Confidence                0  0121  34578899999999999999999999999996665 8888999999999999999988887664   


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          345 LIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       345 ~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                          ..|.++....+....++|.....+.+++.++..+|+|++|+...
T Consensus       232 ----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  275 (283)
T 3edt_B          232 ----APYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE  275 (283)
T ss_dssp             ---------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                56778877777777888998889999999999999999888765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.86  E-value=1e-21  Score=203.68  Aligned_cols=129  Identities=18%  Similarity=0.132  Sum_probs=114.9

Q ss_pred             HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      .-+..+|+|++|+++|+++|+|.   +.     .+|++|.  .  ++.+++|||.+|..||+|++|+++|+|+|.|++++
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~---~~-----~lg~~h~--~--~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~  362 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSN---SE-----RLPDINI--Y--QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF  362 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCS---SC-----CCCTTSH--H--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhc---cC-----cCCccch--H--HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence            34668999999999999999993   44     6774442  2  56689999999999999999999999999999999


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHHHHHH
Q 013549          314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVAL  380 (441)
Q Consensus       314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~~~~~  380 (441)
                      +|++||+|+.+++|||.+|..||+|++|      +.+|+||++|++ ..|++||.|+..++|++.+..
T Consensus       363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          363 FPGSHPVRGVQVMKVGKLQLHQGMFPQA------MKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987      999999999995 679999999999988877753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.86  E-value=2.8e-19  Score=183.99  Aligned_cols=297  Identities=14%  Similarity=0.114  Sum_probs=212.0

Q ss_pred             HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh-
Q 013549           61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN-  139 (441)
Q Consensus        61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~-  139 (441)
                      ....+.++|.++.    ..|+|++|+.+|++++.+.        |....++..+|.+|..+|+|++|+..|+ ++.+.+ 
T Consensus        58 ~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~  124 (537)
T 3fp2_A           58 EPVFYSNISACYI----STGDLEKVIEFTTKALEIK--------PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGD  124 (537)
T ss_dssp             CHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred             CcHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCC
Confidence            3466788888874    3689999999999999853        3445789999999999999999998774 331111 


Q ss_pred             --------------------------------------------------------------------------------
Q 013549          140 --------------------------------------------------------------------------------  139 (441)
Q Consensus       140 --------------------------------------------------------------------------------  139 (441)
                                                                                                      
T Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  204 (537)
T 3fp2_A          125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY  204 (537)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------hhhhh----------hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          140 ----------------------SILGV----------RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       140 ----------------------~~lg~----------~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                                            ..+..          ...++..++.++..+|++++|..++++++.+.    +.     
T Consensus       205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----~~-----  275 (537)
T 3fp2_A          205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH----PT-----  275 (537)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC-----
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----CC-----
Confidence                                  00000          01245566777888888888888888886542    11     


Q ss_pred             hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549          188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT  267 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~  267 (441)
                          .......|.++..+|+|++|..+|++++...+....+...+|.++..+|+|++|+..|++++.+   ...     .
T Consensus       276 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-----~  343 (537)
T 3fp2_A          276 ----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL---NPE-----N  343 (537)
T ss_dssp             ----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----C
T ss_pred             ----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-----C
Confidence                1122345777788999999999999999976667778888999999999999999999999987   111     1


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 013549          268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ  347 (441)
Q Consensus       268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~A  347 (441)
                                  ..++.++|.+|..+|+|++|+.+|++++.+        +|....++.++|.+|..+|++++|      
T Consensus       344 ------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A------  397 (537)
T 3fp2_A          344 ------------VYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTA------  397 (537)
T ss_dssp             ------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHH------
T ss_pred             ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHH------
Confidence                        135789999999999999999999999987        344456788899999999999987      


Q ss_pred             HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHh----------ccHHHHHHHhhchhh----HHHHHHHHHHHHHhcc
Q 013549          348 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR----------GGYAEALSVQQNRKD----EGERMKRWAEAAWRNR  413 (441)
Q Consensus       348 e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~----------g~yaeal~~~~~r~~----eae~~~~~a~~~~~~~  413 (441)
                      ...|++++++.......+. ....+.+++.++..+          |+|++|+.....-..    ..+.+...+..+++.+
T Consensus       398 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g  476 (537)
T 3fp2_A          398 IKQYDIAKRLEEVQEKIHV-GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME  476 (537)
T ss_dssp             HHHHHHHHHHHHHCSSCSS-TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCcchhhHH-HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            8888888888633211111 122234556666666          777777765532211    1344555555555555


Q ss_pred             ChhHH
Q 013549          414 RVSLA  418 (441)
Q Consensus       414 r~~~~  418 (441)
                      ++..|
T Consensus       477 ~~~~A  481 (537)
T 3fp2_A          477 KIDEA  481 (537)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            54443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.86  E-value=1.7e-19  Score=180.40  Aligned_cols=253  Identities=13%  Similarity=0.075  Sum_probs=198.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg--~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                      .+..+|..+..+|+|++|++.|++++.+.+....  ....++.+++.+|..+|++++|..++++++++........    
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~----  178 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS----  178 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH----
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch----
Confidence            5667899999999999999999999988765321  1245788999999999999999999999999987755211    


Q ss_pred             hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCC---chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEE---EGC---TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                       ..........|.++..+|+|++|+.+|++++..   .+.   ...+..++|.+|..+|+|++|+.+|++|+++......
T Consensus       179 -~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  257 (378)
T 3q15_A          179 -IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP  257 (378)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred             -hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence             111233345788899999999999999999981   111   2345578899999999999999999999999643221


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                   |.  ...++.+||.+|..+|++++|.+++++|+.+.++.   ..|.....+.+|+.+|..+|+.   
T Consensus       258 -------------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~---  316 (378)
T 3q15_A          258 -------------DL--LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDE---  316 (378)
T ss_dssp             -------------GG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCH---
T ss_pred             -------------hh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH---
Confidence                         22  24578999999999999999999999999998764   2355555789999999988873   


Q ss_pred             hhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchh
Q 013549          342 SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK  396 (441)
Q Consensus       342 ~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~  396 (441)
                             ..+.+|+++++. ....+++.....+++.++..+|+|++|+..+..-.
T Consensus       317 -------~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          317 -------RKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             -------HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                   457778887764 23456666677789999999999999998874433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=8.3e-20  Score=186.26  Aligned_cols=282  Identities=13%  Similarity=0.062  Sum_probs=219.4

Q ss_pred             hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCC--CCC----chhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 013549           59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDG--QLA----ESWRGISLLAMSTLLYESGNYVEAIEKLQ  132 (441)
Q Consensus        59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~--g~~----h~~~a~~l~nLa~l~~~qG~y~eA~e~~~  132 (441)
                      |+.+......+..+... ...|+|++|+.+|++++...+...  .++    .|..+.++..+|.++..+|+|++|+..|+
T Consensus       183 ~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  261 (514)
T 2gw1_A          183 SNEADKELMNGLSNLYK-RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK  261 (514)
T ss_dssp             SCHHHHHHHHHHHHHSS-CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHh-hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34455555666654211 136899999999999998432211  233    38899999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHH
Q 013549          133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAE  212 (441)
Q Consensus       133 ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe  212 (441)
                      +++...+.     ...+..++.+|..+|++++|..++++++.+.    +..        .......+.++..+|++++|.
T Consensus       262 ~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~--------~~~~~~l~~~~~~~~~~~~A~  324 (514)
T 2gw1_A          262 KAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLD----SNN--------SSVYYHRGQMNFILQNYDQAG  324 (514)
T ss_dssp             HHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC----TTC--------THHHHHHHHHHHHTTCTTHHH
T ss_pred             HHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC----cCC--------HHHHHHHHHHHHHhCCHHHHH
Confidence            99988755     3477889999999999999999999886432    111        112234677888999999999


Q ss_pred             HHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549          213 SFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH  292 (441)
Q Consensus       213 ~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~  292 (441)
                      ..|++++...+....+...+|.++..+|++++|+.+|++++++.   ..     .            ..++.++|.+|..
T Consensus       325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-----~------------~~~~~~la~~~~~  384 (514)
T 2gw1_A          325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---PE-----A------------PEVPNFFAEILTD  384 (514)
T ss_dssp             HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---TT-----C------------SHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cc-----C------------HHHHHHHHHHHHH
Confidence            99999999666666778889999999999999999999999871   11     1            1357899999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH---hhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549          293 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN---KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE  369 (441)
Q Consensus       293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~---qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~  369 (441)
                      +|+|++|+.+|++++.+....  ++......++.++|.+|..   +|++++|      ...|++++++.    +++   .
T Consensus       385 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A------~~~~~~a~~~~----~~~---~  449 (514)
T 2gw1_A          385 KNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEA------TNLLEKASKLD----PRS---E  449 (514)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHH------HHHHHHHHHHC----TTC---H
T ss_pred             CCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHH------HHHHHHHHHhC----ccc---H
Confidence            999999999999999875432  1111224589999999999   9999987      89999998873    222   3


Q ss_pred             hhhccHHHHHHHhccHHHHHHHhh
Q 013549          370 TKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       370 ~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      ....+++.++..+|+|++|+....
T Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~  473 (514)
T 2gw1_A          450 QAKIGLAQMKLQQEDIDEAITLFE  473 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHH
Confidence            456689999999999999988763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.85  E-value=5.5e-19  Score=175.12  Aligned_cols=264  Identities=14%  Similarity=0.113  Sum_probs=204.2

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      ..+..+.+++..+.    ..|+|++|+.++++++.+.....  +....+.+++++|.++..+|+|++|++.|++++.+.+
T Consensus        51 ~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  124 (373)
T 1hz4_A           51 SRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQHD--VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  124 (373)
T ss_dssp             HHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            35566778888873    36899999999999999887653  4557789999999999999999999999999999887


Q ss_pred             hhhhh----hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          140 SILGV----RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF  215 (441)
Q Consensus       140 ~~lg~----~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~  215 (441)
                      ...+.    ....+.+++.++..+|++++|..++++++.+.....+.      . ........+.++..+|++++|..++
T Consensus       125 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~-~~~~~~~la~~~~~~g~~~~A~~~l  197 (373)
T 1hz4_A          125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------Q-QLQCLAMLIQCSLARGDLDNARSQL  197 (373)
T ss_dssp             HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG------G-GHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH------H-HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            64221    23467789999999999999999999999887654421      1 1122334677888999999999999


Q ss_pred             Hhhhhc--c-CCc-hHHHH---HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH
Q 013549          216 KGLQEE--E-GCT-GSAAL---SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ  288 (441)
Q Consensus       216 ~~aL~~--~-~~~-~~~a~---~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~  288 (441)
                      ++++..  . ... .....   ..+.++..+|++++|..++++++.+   ..+   .+.          .....+.++|.
T Consensus       198 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~---~~~----------~~~~~~~~la~  261 (373)
T 1hz4_A          198 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFA---NNH----------FLQGQWRNIAR  261 (373)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCT---TCG----------GGHHHHHHHHH
T ss_pred             HHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCC---cch----------hhHHHHHHHHH
Confidence            999872  1 111 11111   3455688999999999999998865   111   000          01224679999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          289 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       289 ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      ++..+|++++|.+++++++.+.++ .| .++....++..+|.+|..+|++++|      ...|++++++...
T Consensus       262 ~~~~~g~~~~A~~~l~~a~~~~~~-~~-~~~~~~~~~~~la~~~~~~g~~~~A------~~~l~~al~~~~~  325 (373)
T 1hz4_A          262 AQILLGEFEPAEIVLEELNENARS-LR-LMSDLNRNLLLLNQLYWQAGRKSDA------QRVLLDALKLANR  325 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TT-CHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHh-Cc-chhhHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHhcc
Confidence            999999999999999999999987 33 2456667999999999999999887      8999999999753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.85  E-value=2.5e-20  Score=173.44  Aligned_cols=196  Identities=19%  Similarity=0.123  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                      +..+.++|.++..+|+|++|+..|++++.+.+..    ..++.+++.++..+|++++|...+++++++.    |..    
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~----   72 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVART----PRY----   72 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCc----
Confidence            4578999999999999999999999999887654    2478899999999999999999999997553    211    


Q ss_pred             hhhHhHHHHHHHHHHHHc-----------CCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549          188 GAVNSRANAVKGLVELAH-----------GNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVL  256 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~~q-----------G~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~  256 (441)
                          ..+....|.++..+           |++++|+..|++++...+....+..++|.++..+|++++|+..|++|+++ 
T Consensus        73 ----~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-  147 (217)
T 2pl2_A           73 ----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-  147 (217)
T ss_dssp             ----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             ----HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-
Confidence                11223457777788           99999999999999977777788899999999999999999999999999 


Q ss_pred             HhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549          257 AEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA  336 (441)
Q Consensus       257 ~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG  336 (441)
                        . .     .            ..++.+||.+|..+|+|++|+..|++++.+        +|+-...+.++|.+|..+|
T Consensus       148 --~-~-----~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g  199 (217)
T 2pl2_A          148 --E-D-----T------------PEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKG  199 (217)
T ss_dssp             --C-C-----C------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC--
T ss_pred             --c-c-----c------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcc
Confidence              2 2     1            235789999999999999999999999986        4666678899999999999


Q ss_pred             chhhhhhhHHHHHHHHHH
Q 013549          337 MQEHSSALLIQEGLYRRA  354 (441)
Q Consensus       337 ~~eeA~~~~~Ae~ly~rA  354 (441)
                      ++++|      ...|+++
T Consensus       200 ~~~~A------~~~~~~~  211 (217)
T 2pl2_A          200 KAEEA------ARAAALE  211 (217)
T ss_dssp             ------------------
T ss_pred             CHHHH------HHHHHHH
Confidence            99887      5555554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.8e-19  Score=180.61  Aligned_cols=265  Identities=14%  Similarity=0.094  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhhhhhh----------hhhHHHHHHHHHHHHhcCCcchhHHHHHHHH
Q 013549          107 RGISLLAMSTLLYE---SGNYVEAIEKLQKVENFKNSIL----------GVRVAAMEALAGLYLQLGQDDTSSVVADKCL  173 (441)
Q Consensus       107 ~a~~l~nLa~l~~~---qG~y~eA~e~~~ral~i~~~~l----------g~~~~al~~La~l~~~~G~~~~A~~l~~~~L  173 (441)
                      ....+..+|..+..   +|+|++|++.|++++...+..+          .....++..++.++..+|++++|..++++++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  264 (514)
T 2gw1_A          185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI  264 (514)
T ss_dssp             HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            37777888888776   9999999999999998332211          1224577889999999999999999999887


Q ss_pred             HHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHH
Q 013549          174 QLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVI  253 (441)
Q Consensus       174 ~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL  253 (441)
                      .+.    +.         .......+.++..+|++++|..+|++++...+....+...+|.++..+|++++|+..|++++
T Consensus       265 ~~~----~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  331 (514)
T 2gw1_A          265 ELF----PR---------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK  331 (514)
T ss_dssp             HHC----CC---------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             hhC----cc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            542    11         12223457788899999999999999999766667778889999999999999999999999


Q ss_pred             HHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH
Q 013549          254 EVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR  333 (441)
Q Consensus       254 ~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~  333 (441)
                      ++   ...     .            ..++.++|.+|..+|+|++|+.+|++++.+        +|....++.++|.+|.
T Consensus       332 ~~---~~~-----~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~  383 (514)
T 2gw1_A          332 EL---DPE-----N------------IFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPNFFAEILT  383 (514)
T ss_dssp             HT---CSS-----C------------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHH
T ss_pred             Hh---Chh-----h------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccCHHHHHHHHHHHH
Confidence            87   111     1            135789999999999999999999999976        3334467899999999


Q ss_pred             HhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH---hccHHHHHHHhhchhh----HHHHHHHHH
Q 013549          334 NKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA---RGGYAEALSVQQNRKD----EGERMKRWA  406 (441)
Q Consensus       334 ~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~---~g~yaeal~~~~~r~~----eae~~~~~a  406 (441)
                      .+|++++|      ...|++++++.... ++.......+.+++.++..   .|+|++|+.....-..    ..+.+...+
T Consensus       384 ~~~~~~~A------~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  456 (514)
T 2gw1_A          384 DKNDFDKA------LKQYDLAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA  456 (514)
T ss_dssp             HTTCHHHH------HHHHHHHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HCCCHHHH------HHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            99999987      89999999986432 1212223467789999999   9999999887633221    145566677


Q ss_pred             HHHHhccChhHHH
Q 013549          407 EAAWRNRRVSLAE  419 (441)
Q Consensus       407 ~~~~~~~r~~~~~  419 (441)
                      ..+++.+++..|.
T Consensus       457 ~~~~~~g~~~~A~  469 (514)
T 2gw1_A          457 QMKLQQEDIDEAI  469 (514)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHhcCHHHHH
Confidence            7777777766554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.84  E-value=1.3e-18  Score=170.16  Aligned_cols=239  Identities=11%  Similarity=0.056  Sum_probs=162.5

Q ss_pred             ChhhHHHHHHHHHHhhhcccc-CC--CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPS-DG--QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEA  151 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~-~~--g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~  151 (441)
                      +.|+|++|+.+++++.....+ .+  +++....+..+...|.+|..+|+|++|++.|++++.+.+.. +..   ..++++
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~   81 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN-RSLFHAAKAFEQ   81 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            468999999999999886543 12  35666667777777777777777777777777776665432 211   112233


Q ss_pred             HHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCC---c
Q 013549          152 LAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE---EGC---T  225 (441)
Q Consensus       152 La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~---~  225 (441)
                                                                    .|.++..+|+|++|+.+|++++..   ...   .
T Consensus        82 ----------------------------------------------lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~  115 (307)
T 2ifu_A           82 ----------------------------------------------AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA  115 (307)
T ss_dssp             ----------------------------------------------HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred             ----------------------------------------------HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                                                          344555666666666666666651   111   1


Q ss_pred             hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013549          226 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR  305 (441)
Q Consensus       226 ~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~r  305 (441)
                      ..+..++|.+|.. |+|++|+.+|++|+++......             + .....+++++|.+|..+|+|++|+++|++
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~-------------~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  180 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER-------------L-RQAAELIGKASRLLVRQQKFDEAAASLQK  180 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC-------------h-hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            2344677888888 9999999999999999643211             0 11245688999999999999999999999


Q ss_pred             HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccH
Q 013549          306 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGY  385 (441)
Q Consensus       306 AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~y  385 (441)
                      ++.+..+.-  .++.++.++.++|.+|..+|++++|      ...|++++ +.  +..........+.++...+ ..|+.
T Consensus       181 al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A------~~~~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d~  248 (307)
T 2ifu_A          181 EKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAA------QKCVRESY-SI--PGFSGSEDCAALEDLLQAY-DEQDE  248 (307)
T ss_dssp             HHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcCH
Confidence            999998753  2667788999999999999999887      88999998 43  2111222233444555444 34555


Q ss_pred             HHHHH
Q 013549          386 AEALS  390 (441)
Q Consensus       386 aeal~  390 (441)
                      ++...
T Consensus       249 ~~~~~  253 (307)
T 2ifu_A          249 EQLLR  253 (307)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.8e-18  Score=159.95  Aligned_cols=230  Identities=16%  Similarity=0.092  Sum_probs=186.0

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549          105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY  184 (441)
Q Consensus       105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~  184 (441)
                      ++.+..+.++|..+..+|+|++|++.|++++.+. ..    ..++..++.+|..+|++++|..++++++++.....+.. 
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-   75 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY-   75 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH-
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch-
Confidence            4578899999999999999999999999998886 32    24788899999999999999999999998875543211 


Q ss_pred             hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCC
Q 013549          185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD  264 (441)
Q Consensus       185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~  264 (441)
                          ..........|.++..+|++++|..+|++++...+.        +.++...|++++|...+++++.+.        
T Consensus        76 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~--------  135 (258)
T 3uq3_A           76 ----KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVN--------  135 (258)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             ----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcC--------
Confidence                111223345678888999999999999999995433        346778899999999999998761        


Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549          265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL  344 (441)
Q Consensus       265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~  344 (441)
                                |.  ...++.++|.+|..+|+|++|+.+|++++.+        +|....++.++|.+|..+|++++|   
T Consensus       136 ----------~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A---  192 (258)
T 3uq3_A          136 ----------PE--KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEA---  192 (258)
T ss_dssp             ----------HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH---
T ss_pred             ----------cc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHH---
Confidence                      11  2346789999999999999999999999986        355567899999999999999987   


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549          345 LIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       345 ~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                         ...|++++++.       |+......+++.++..+|++++|+....
T Consensus       193 ---~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          193 ---IADCNKAIEKD-------PNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             ---HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---HHHHHHHHHhC-------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence               89999998873       2223466789999999999998887653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.84  E-value=1.2e-19  Score=173.72  Aligned_cols=248  Identities=10%  Similarity=0.065  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      +..+.++|..+.+    .|+|++|+.++++++.+.        |....++.++|.+|..+|+|++|++.|++++.+.+..
T Consensus        55 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  122 (327)
T 3cv0_A           55 EEAWRSLGLTQAE----NEKDGLAIIALNHARMLD--------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  122 (327)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence            3445667777733    589999999999999863        3346789999999999999999999999998876654


Q ss_pred             hhhhHH---------HHHHH-HH-HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549          142 LGVRVA---------AMEAL-AG-LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES  210 (441)
Q Consensus       142 lg~~~~---------al~~L-a~-l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e  210 (441)
                      ......         ....+ +. ++..+|++++|..++++++.+...    .        .......+.++..+|++++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~--------~~~~~~la~~~~~~~~~~~  190 (327)
T 3cv0_A          123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN----D--------AQLHASLGVLYNLSNNYDS  190 (327)
T ss_dssp             TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT----C--------HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC----C--------HHHHHHHHHHHHHhccHHH
Confidence            221100         11122 33 377788899999888888754211    0        1222346778889999999


Q ss_pred             HHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549          211 AESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE  290 (441)
Q Consensus       211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly  290 (441)
                      |..+|++++...+....+...+|.++..+|++++|+.+|++++++.   ..                 ...++.++|.+|
T Consensus       191 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~-----------------~~~~~~~l~~~~  250 (327)
T 3cv0_A          191 AAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN---PG-----------------YVRVMYNMAVSY  250 (327)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-----------------CHHHHHHHHHHH
Confidence            9999999999766667778889999999999999999999999871   11                 123578999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          291 AHMGNFGDAEEILTRTLTKTEELFGSHHPK----VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~----va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      ..+|+|++|.++|++++.+.....++.+..    ...++.++|.+|..+|++++|      ...+++++++..
T Consensus       251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~l~~~~  317 (327)
T 3cv0_A          251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV------ELTYAQNVEPFA  317 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH------HHHTTCCSHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHhcc
Confidence            999999999999999999875543333322    678899999999999999987      888999998874

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.81  E-value=9.4e-18  Score=159.32  Aligned_cols=222  Identities=15%  Similarity=0.207  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENF  137 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~----qG~y~eA~e~~~ral~i  137 (441)
                      +..+.++|..+.    ..|+|++|+.+|++++.       +.+   ..++.+||.+|..    +|++++|+..|++++++
T Consensus         6 ~~a~~~lg~~~~----~~~~~~~A~~~~~~a~~-------~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~   71 (273)
T 1ouv_A            6 PKELVGLGAKSY----KEKDFTQAKKYFEKACD-------LKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   71 (273)
T ss_dssp             HHHHHHHHHHHH----HTTCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHH----hCCCHHHHHHHHHHHHH-------CCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence            445677888873    35799999999999997       223   3679999999999    99999999999999876


Q ss_pred             hhhhhhhhHHHHHHHHHHHHh----cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH----cCCHH
Q 013549          138 KNSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA----HGNLE  209 (441)
Q Consensus       138 ~~~~lg~~~~al~~La~l~~~----~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~----qG~y~  209 (441)
                      .      ...++.+++.+|..    .+++++|..+++++++.   ..           ..+....|.++..    +|+++
T Consensus        72 ~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~-----------~~a~~~lg~~~~~~~~~~~~~~  131 (273)
T 1ouv_A           72 N------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---KY-----------AEGCASLGGIYHDGKVVTRDFK  131 (273)
T ss_dssp             T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TC-----------HHHHHHHHHHHHHCSSSCCCHH
T ss_pred             C------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---CC-----------ccHHHHHHHHHHcCCCcccCHH
Confidence            4      23478899999999    99999999999998753   11           1122346778888    99999


Q ss_pred             HHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH
Q 013549          210 SAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA  285 (441)
Q Consensus       210 eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n  285 (441)
                      +|+.+|++++...  ...+..++|.+|..    .|++++|+.+|++|++.     +     .            ..++.+
T Consensus       132 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~-----~------------~~a~~~  187 (273)
T 1ouv_A          132 KAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----K-----D------------SPGCFN  187 (273)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----C------------HHHHHH
T ss_pred             HHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----C-----C------------HHHHHH
Confidence            9999999999854  44567888999998    99999999999999875     1     0            235789


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hhchhhhhhhHHHHHHHHHHHHH
Q 013549          286 LGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       286 Lg~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      ||.+|..    +|++++|.++|++++++     |   |  ...+.+||.+|..    ++++++|      ...|++|+++
T Consensus       188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~---~--~~a~~~l~~~~~~g~~~~~~~~~A------~~~~~~a~~~  251 (273)
T 1ouv_A          188 AGNMYHHGEGATKNFKEALARYSKACEL-----E---N--GGGCFNLGAMQYNGEGVTRNEKQA------IENFKKGCKL  251 (273)
T ss_dssp             HHHHHHHTCSSCCCHHHHHHHHHHHHHT-----T---C--HHHHHHHHHHHHTTSSSSCCSTTH------HHHHHHHHHH
T ss_pred             HHHHHHcCCCCCccHHHHHHHHHHHHhC-----C---C--HHHHHHHHHHHHcCCCcccCHHHH------HHHHHHHHHc
Confidence            9999999    99999999999999975     2   2  5678999999999    9999887      8999999887

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.81  E-value=9.2e-18  Score=157.20  Aligned_cols=254  Identities=12%  Similarity=0.037  Sum_probs=194.6

Q ss_pred             cChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 013549           77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY  156 (441)
Q Consensus        77 ~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~  156 (441)
                      ..+|+|++|+.+|++++...    ..+.|..+.++.++|.+|..+|+|++|+..|++++.+.+..    ..++.+++.+|
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~   87 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYL   87 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Confidence            46789999999999999863    23567899999999999999999999999999999886543    34788899999


Q ss_pred             HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549          157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL  236 (441)
Q Consensus       157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~  236 (441)
                      ..+|++++|..++++++.+....            ..+....|.++..+|+|++|..+|++++...+....... +..++
T Consensus        88 ~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~  154 (275)
T 1xnf_A           88 TQAGNFDAAYEAFDSVLELDPTY------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL-WLYLA  154 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHH
T ss_pred             HHccCHHHHHHHHHHHHhcCccc------------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH-HHHHH
Confidence            99999999999999998653111            112234677888999999999999999995544443322 33355


Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      ..+|++++|+.+|++++..   ...    ..              ...+++.++..++++++|...+++++.....    
T Consensus       155 ~~~~~~~~A~~~~~~~~~~---~~~----~~--------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----  209 (275)
T 1xnf_A          155 EQKLDEKQAKEVLKQHFEK---SDK----EQ--------------WGWNIVEFYLGNISEQTLMERLKADATDNTS----  209 (275)
T ss_dssp             HHHHCHHHHHHHHHHHHHH---SCC----CS--------------THHHHHHHHTTSSCHHHHHHHHHHHCCSHHH----
T ss_pred             HHhcCHHHHHHHHHHHHhc---CCc----ch--------------HHHHHHHHHHHhcCHHHHHHHHHHHhccccc----
Confidence            6789999999999999987   111    11              1246888899999999999999999877654    


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      ..|....++.++|.+|..+|++++|      ...|++++++.    |++..      ..+.++...|+|.+|+...
T Consensus       210 ~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~----p~~~~------~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          210 LAEHLSETNFYLGKYYLSLGDLDSA------TALFKLAVANN----VHNFV------EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC----CTTCH------HHHHHHHHHHHHHHC----
T ss_pred             ccccccHHHHHHHHHHHHcCCHHHH------HHHHHHHHhCC----chhHH------HHHHHHHHHHHHHhhHHHH
Confidence            2355678999999999999999987      89999998762    22221      2355667778888887654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.81  E-value=6.4e-19  Score=163.89  Aligned_cols=197  Identities=16%  Similarity=0.115  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      +....++|..+.    ..|+|++|+..|++++.+        .|....++.++|.++..+|++++|+..|++++.+.+..
T Consensus         5 ~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~   72 (217)
T 2pl2_A            5 EQNPLRLGVQLY----ALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY   72 (217)
T ss_dssp             CHHHHHHHHHHH----HTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            345677888873    368999999999999974        34456789999999999999999999999999988764


Q ss_pred             hhhhHHHHHHHHHHHHhc-----------CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549          142 LGVRVAAMEALAGLYLQL-----------GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES  210 (441)
Q Consensus       142 lg~~~~al~~La~l~~~~-----------G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e  210 (441)
                      .    .++.+++.++..+           |++++|...+++++++.    |..        ..+....|.++..+|++++
T Consensus        73 ~----~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----P~~--------~~~~~~lg~~~~~~g~~~~  136 (217)
T 2pl2_A           73 L----GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN----PRY--------APLHLQRGLVYALLGERDK  136 (217)
T ss_dssp             H----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHTTCHHH
T ss_pred             H----HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC----ccc--------HHHHHHHHHHHHHcCChHH
Confidence            2    4678899999999           99999999999987652    211        1122356888899999999


Q ss_pred             HHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549          211 AESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE  290 (441)
Q Consensus       211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly  290 (441)
                      |+..|++++... ..+.+..++|.+|..+|++++|+..|++++++   .               |+  ...++.+||.+|
T Consensus       137 A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~---------------P~--~~~~~~~la~~~  195 (217)
T 2pl2_A          137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---A---------------PK--DLDLRVRYASAL  195 (217)
T ss_dssp             HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---S---------------TT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C---------------CC--ChHHHHHHHHHH
Confidence            999999999965 67778889999999999999999999999998   1               11  124578999999


Q ss_pred             HHcCCHHHHHHHHHHHH
Q 013549          291 AHMGNFGDAEEILTRTL  307 (441)
Q Consensus       291 ~~qG~y~eAe~l~~rAL  307 (441)
                      ..+|++++|++.|+++-
T Consensus       196 ~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          196 LLKGKAEEAARAAALEH  212 (217)
T ss_dssp             TC---------------
T ss_pred             HHccCHHHHHHHHHHHh
Confidence            99999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.81  E-value=2.1e-18  Score=162.05  Aligned_cols=237  Identities=16%  Similarity=0.129  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG  188 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~  188 (441)
                      ..+.++|.++..+|+|++|+..|++++.+.+...    .++..++.+|..+|++++|..++++++...  ..+       
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------   70 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSKV--NAT-------   70 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTT-------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--Cch-------
Confidence            3578899999999999999999999998876532    267889999999999999999999987511  111       


Q ss_pred             hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549          189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL  268 (441)
Q Consensus       189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~l  268 (441)
                      .....+....|.++..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+..|++++++   ...       
T Consensus        71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~-------  140 (272)
T 3u4t_A           71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTT-------  140 (272)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCC-------
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCC-------
Confidence            1112223456888899999999999999999976667778889999999999999999999999876   111       


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc---hhhhhhhH
Q 013549          269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM---QEHSSALL  345 (441)
Q Consensus       269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~---~eeA~~~~  345 (441)
                                ...++.++|......++|++|+..|++++.+.        |+....+.++|.+|..+|+   +++|    
T Consensus       141 ----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~A----  198 (272)
T 3u4t_A          141 ----------DPKVFYELGQAYYYNKEYVKADSSFVKVLELK--------PNIYIGYLWRARANAAQDPDTKQGLA----  198 (272)
T ss_dssp             ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHSTTCSSCTT----
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCcchhhHHH----
Confidence                      12467899944445569999999999999863        4446788899999999998   7776    


Q ss_pred             HHHHHHHHHHHHhhcCC-CCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          346 IQEGLYRRALEFLKAPP-LESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       346 ~Ae~ly~rAL~i~~~~~-~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                        ...|++++++.+..+ ++.+.......+++.++...|+|++|+...
T Consensus       199 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  244 (272)
T 3u4t_A          199 --KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW  244 (272)
T ss_dssp             --HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             --HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence              899999999985422 222224456778999999999998887765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.80  E-value=3e-18  Score=166.52  Aligned_cols=210  Identities=9%  Similarity=0.032  Sum_probs=154.0

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAGL  155 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~La~l  155 (441)
                      .++|++|+.+|+++                      |.+|..+|+|++|++.|++++.+.+.. +..   ..++++++.+
T Consensus        30 ~~~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~   86 (292)
T 1qqe_A           30 SYKFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKA-GNEDEAGNTYVEAYKC   86 (292)
T ss_dssp             HHHHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Confidence            34588888888877                      667899999999999999999997653 332   4588999999


Q ss_pred             HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHc-CCHHHHHHHHHhhhhc---cCCc---hHH
Q 013549          156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH-GNLESAESFFKGLQEE---EGCT---GSA  228 (441)
Q Consensus       156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~q-G~y~eAe~l~~~aL~~---~~~~---~~~  228 (441)
                      |..+|++++|..++++++.+....+..      ..........|.+|..+ |+|++|+.+|++++..   ....   ..+
T Consensus        87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~  160 (292)
T 1qqe_A           87 FKSGGNSVNAVDSLENAIQIFTHRGQF------RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC  160 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence            999999999999999999998665421      01112223467788886 9999999999999982   1112   234


Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ..++|.++..+|+|++|+.+|++++++.   ..   ....       ......++.++|.+|..+|++++|+..|++++.
T Consensus       161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~---~~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          161 FIKCADLKALDGQYIEASDIYSKLIKSS---MG---NRLS-------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT---SS---CTTT-------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHH---hc---CCcc-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5678999999999999999999999982   21   1100       000123678999999999999999999999998


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHH
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFR  333 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~  333 (441)
                      +......   ..-...+.+|+..|.
T Consensus       228 l~p~~~~---~~~~~~l~~l~~~~~  249 (292)
T 1qqe_A          228 EDPNFAD---SRESNFLKSLIDAVN  249 (292)
T ss_dssp             C------------HHHHHHHHHHHH
T ss_pred             hCCCCCC---cHHHHHHHHHHHHHH
Confidence            7654322   122456777888775

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.79  E-value=2.2e-18  Score=189.56  Aligned_cols=173  Identities=17%  Similarity=0.135  Sum_probs=130.7

Q ss_pred             CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549          102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP  181 (441)
Q Consensus       102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~  181 (441)
                      ..+|..+.+++|||.+|.++|+|++|++.|++++++.+...    .++++                              
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----~a~~n------------------------------   48 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----AAHSN------------------------------   48 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHH------------------------------
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHH------------------------------
Confidence            46889999999999999999999999999999987765421    12222                              


Q ss_pred             CcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          182 ENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       182 ~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                                      +|.++..+|+|++|+..|+++++..+....+..++|.+|..+|+|++|+..|++||++   .-.
T Consensus        49 ----------------Lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~  109 (723)
T 4gyw_A           49 ----------------LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---NPA  109 (723)
T ss_dssp             ----------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred             ----------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence                            3555667788888888888888766666677778888888888888888888888877   111


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                       ...+++|||.+|..+|+|++|++.|++||++        .|+....+.|||.+|..+|++++|
T Consensus       110 -----------------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--------~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          110 -----------------FADAHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHhhhhhHHHhcccHHHH
Confidence                             1245778888888888888888888888876        355556778888888888888776


Q ss_pred             hhhHHHHHHHHHHHHHh
Q 013549          342 SALLIQEGLYRRALEFL  358 (441)
Q Consensus       342 ~~~~~Ae~ly~rAL~i~  358 (441)
                            +..|++++++.
T Consensus       165 ------~~~~~kal~l~  175 (723)
T 4gyw_A          165 ------DERMKKLVSIV  175 (723)
T ss_dssp             ------HHHHHHHHHHH
T ss_pred             ------HHHHHHHHHhC
Confidence                  77788888775

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.79  E-value=1.4e-17  Score=148.57  Aligned_cols=167  Identities=17%  Similarity=0.177  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549          107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT  186 (441)
Q Consensus       107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~  186 (441)
                      ++.++.+||.+|..+|+|++|++.|++++++.+...    .++.+++.                                
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~--------------------------------   47 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGK--------------------------------   47 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHH--------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH--------------------------------
Confidence            567899999999999999999999999987765432    23334444                                


Q ss_pred             hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCC
Q 013549          187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMN  266 (441)
Q Consensus       187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~  266 (441)
                                    ++..+|++++|...+++++...+....+...++.++..++++++|...+++++.+.   ..     
T Consensus        48 --------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---~~-----  105 (184)
T 3vtx_A           48 --------------TYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN---TV-----  105 (184)
T ss_dssp             --------------HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----
T ss_pred             --------------HHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-----
Confidence                          44455555566666655555444444455555556666666666666666666551   00     


Q ss_pred             CccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHH
Q 013549          267 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI  346 (441)
Q Consensus       267 ~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~  346 (441)
                                  ...+...+|.+|..+|+|++|++.|++++.+        +|....++.++|.+|..+|++++|     
T Consensus       106 ------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A-----  160 (184)
T 3vtx_A          106 ------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRAYQSIGLAYEGKGLRDEA-----  160 (184)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH-----
T ss_pred             ------------chHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhHHHHHHHHHHHCCCHHHH-----
Confidence                        0123455666666666666666666666654        344445566666666666666554     


Q ss_pred             HHHHHHHHHHH
Q 013549          347 QEGLYRRALEF  357 (441)
Q Consensus       347 Ae~ly~rAL~i  357 (441)
                       ...|++||++
T Consensus       161 -~~~~~~al~~  170 (184)
T 3vtx_A          161 -VKYFKKALEK  170 (184)
T ss_dssp             -HHHHHHHHHT
T ss_pred             -HHHHHHHHhC
Confidence             5566666554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.78  E-value=7.6e-18  Score=171.89  Aligned_cols=223  Identities=10%  Similarity=-0.023  Sum_probs=182.2

Q ss_pred             chHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 013549           58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN-YVEAIEKLQKVEN  136 (441)
Q Consensus        58 h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~-y~eA~e~~~ral~  136 (441)
                      .|+.+..+.+++.++.    ..|+|++|+.+|++++.+        +|.-..+++++|.+|..+|+ |++|+..|++++.
T Consensus        93 ~p~~~~a~~~lg~~~~----~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~  160 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQ----RDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE  160 (382)
T ss_dssp             CHHHHHHHHHHHHHHH----HTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHH----HCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            4677888888998873    368999999999999974        45557789999999999997 9999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK  216 (441)
Q Consensus       137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~  216 (441)
                      +.+...    .++++++.++..+|++++|...+++++++--..            ..+....|.++..+|+|++|+.+|+
T Consensus       161 l~P~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------------~~a~~~lg~~~~~~g~~~eAl~~~~  224 (382)
T 2h6f_A          161 EQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------------YHAWQHRQWVIQEFKLWDNELQYVD  224 (382)
T ss_dssp             HCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             HCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------------HHHHHHHHHHHHHcCChHHHHHHHH
Confidence            887642    478999999999999999999999998653111            1122346888889999999999999


Q ss_pred             hhhhccCCchHHHHHHHHHHHH-ccChHHH-----HHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549          217 GLQEEEGCTGSAALSYGEYLHA-TRNFLLA-----KKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE  290 (441)
Q Consensus       217 ~aL~~~~~~~~~a~~~a~~~~~-qG~y~eA-----~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly  290 (441)
                      ++|...+....+.+++|.++.. .|++++|     +.+|++||.+   .-               +  ...+.++||.+|
T Consensus       225 ~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P---------------~--~~~a~~~l~~ll  284 (382)
T 2h6f_A          225 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VP---------------H--NESAWNYLKGIL  284 (382)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---ST---------------T--CHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CC---------------C--CHHHHHHHHHHH
Confidence            9999877788888999999999 5666888     5999999998   11               1  124678999999


Q ss_pred             HHcC--CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549          291 AHMG--NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       291 ~~qG--~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~  337 (441)
                      ..+|  +|++|++.++++         +.+|+....+.+||.+|..+|+
T Consensus       285 ~~~g~~~~~~a~~~~~~~---------~~~p~~~~al~~La~~~~~~~~  324 (382)
T 2h6f_A          285 QDRGLSKYPNLLNQLLDL---------QPSHSSPYLIAFLVDIYEDMLE  324 (382)
T ss_dssp             TTTCGGGCHHHHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HccCccchHHHHHHHHHh---------ccCCCCHHHHHHHHHHHHHHhc
Confidence            9999  688887766543         5667777889999999999873

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.78  E-value=3.2e-17  Score=152.42  Aligned_cols=205  Identities=9%  Similarity=-0.006  Sum_probs=140.1

Q ss_pred             CchHH-HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549           57 NSNPV-VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE  135 (441)
Q Consensus        57 ~h~~~-a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral  135 (441)
                      ..|.. +..+..+|..+.    ..|+|++|+.+|++++.+.        |....++.++|.+|..+|+|++|++.|++++
T Consensus        31 ~~~~~~~~~~~~~a~~~~----~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~   98 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYL----QRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKAL   98 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHH----HTTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHH----HcCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444 777777888873    3578889999999988753        3346778888999999999999998888876


Q ss_pred             HhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF  215 (441)
Q Consensus       136 ~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~  215 (441)
                      .+.+..    ...+.                                              ..+.++..+|++++|+.+|
T Consensus        99 ~~~~~~----~~~~~----------------------------------------------~la~~~~~~g~~~~A~~~~  128 (252)
T 2ho1_A           99 ASDSRN----ARVLN----------------------------------------------NYGGFLYEQKRYEEAYQRL  128 (252)
T ss_dssp             HHCTTC----HHHHH----------------------------------------------HHHHHHHHTTCHHHHHHHH
T ss_pred             HHCcCc----HHHHH----------------------------------------------HHHHHHHHHhHHHHHHHHH
Confidence            554321    01122                                              2344556677777777777


Q ss_pred             Hhhhh--ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549          216 KGLQE--EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM  293 (441)
Q Consensus       216 ~~aL~--~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q  293 (441)
                      ++++.  ..+....+...+|.++..+|++++|+.+|++++++   ...                 ...++.+||.+|..+
T Consensus       129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~la~~~~~~  188 (252)
T 2ho1_A          129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRN-----------------QPSVALEMADLLYKE  188 (252)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSC-----------------CHHHHHHHHHHHHHT
T ss_pred             HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---Ccc-----------------cHHHHHHHHHHHHHc
Confidence            77777  44444555666777777888888888888887776   111                 023456788888888


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      |++++|..+|++++.+        .|.....+..++.+|..+|++++|      ...+++++++
T Consensus       189 g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~~  238 (252)
T 2ho1_A          189 REYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTA------ASYGLQLKRL  238 (252)
T ss_dssp             TCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHH------HHHHHHHHHH
Confidence            8888888888777652        233344566777788888887776      6777777665

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.77  E-value=1.1e-18  Score=181.33  Aligned_cols=114  Identities=17%  Similarity=0.128  Sum_probs=97.5

Q ss_pred             HcCCHHHHHHHHHhhhh-----ccCCch---HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549          204 AHGNLESAESFFKGLQE-----EEGCTG---SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL  275 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~-----~~~~~~---~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~  275 (441)
                      .+|+|++|+++|+++|+     -++.|+   .+..++|.+|..||+|++|+++|+|+|+|+++.        +|+.|  |
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------lG~~H--p  379 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH--------YPVYS--L  379 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------SCSSC--H
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH--------cCCCC--h
Confidence            47999999999999998     233444   445678999999999999999999999997553        45322  3


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 013549          276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLA  329 (441)
Q Consensus       276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa  329 (441)
                      +  ++.+++|||.+|..||+|++|+++|+|||+|+++++|++||.|+...+||.
T Consensus       380 ~--~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          380 N--VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             H--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            2  455789999999999999999999999999999999999999999999885

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.77  E-value=6.8e-18  Score=165.14  Aligned_cols=212  Identities=14%  Similarity=0.105  Sum_probs=161.7

Q ss_pred             HcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHH
Q 013549          120 ESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKG  199 (441)
Q Consensus       120 ~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~g  199 (441)
                      .+|+|.+|+++++++.+..+..+             +...+++++|..++.++                          +
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~-------------~~~~~~~~~A~~~~~~a--------------------------~   43 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSF-------------MKWKPDYDSAASEYAKA--------------------------A   43 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCS-------------SSCSCCHHHHHHHHHHH--------------------------H
T ss_pred             ccchHHHHHHHHHHHHHHccccc-------------cCCCCCHHHHHHHHHHH--------------------------H
Confidence            46899999999999876554311             10136666666665543                          4


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          200 LVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       200 l~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                      .++..+|+|++|...|++++..   ....   ..+..++|.+|..+|+|++|+.+|++|+++..+...            
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~------------  111 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT------------  111 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC------------
Confidence            4567899999999999999982   1112   234467789999999999999999999999643211            


Q ss_pred             chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549          274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR  353 (441)
Q Consensus       274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r  353 (441)
                       +. ....++++||.+|.. |+|++|+++|++|+.+++.. | +++..+.+++|+|.+|..+|+|++|      ...|++
T Consensus       112 -~~-~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~  180 (307)
T 2ifu_A          112 -PD-TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLLVRQQKFDEA------AASLQK  180 (307)
T ss_dssp             -HH-HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHH
T ss_pred             -HH-HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHHHHcCCHHHH------HHHHHH
Confidence             11 134578899999999 99999999999999999873 2 3345678999999999999999987      899999


Q ss_pred             HHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          354 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       354 AL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                      ++++....+ ..+.....+.+++.+++.+|+|++|+..+..
T Consensus       181 al~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          181 EKSMYKEME-NYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999985432 2344555777899999999999999887643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.77  E-value=1.1e-17  Score=153.85  Aligned_cols=213  Identities=14%  Similarity=0.076  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      ..+..+.++|..+.    ..|+|++|+.+|++++..        .|....++.++|.+|...|+|++|+..|++++.+.+
T Consensus        21 ~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~   88 (243)
T 2q7f_A           21 MASMTGGQQMGRGS----EFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALELDS   88 (243)
T ss_dssp             -------------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            45566677888773    468999999999999973        334477899999999999999999999999988765


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 013549          140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQ  219 (441)
Q Consensus       140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL  219 (441)
                      ..    ..++..++.++..+|++++|..++++++++....            .......+.++..+|++++|+.+|++++
T Consensus        89 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~  152 (243)
T 2q7f_A           89 SA----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------------GDLFYMLGTVLVKLEQPKLALPYLQRAV  152 (243)
T ss_dssp             TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------------HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             cc----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            43    3467889999999999999999999987653111            1122345777889999999999999999


Q ss_pred             hccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549          220 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA  299 (441)
Q Consensus       220 ~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA  299 (441)
                      ...+....+...+|.++..+|++++|+.+|++++.+   ...                 ...++.++|.+|..+|++++|
T Consensus       153 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ---DPG-----------------HADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCTTHH
T ss_pred             HhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Ccc-----------------cHHHHHHHHHHHHHccCHHHH
Confidence            966666677788999999999999999999999987   111                 123578999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCchHHHHH
Q 013549          300 EEILTRTLTKTEELFGSHHPKVGVVL  325 (441)
Q Consensus       300 e~l~~rAL~i~e~~lG~~HP~va~~l  325 (441)
                      ..+|++++.+     .+++|.+...+
T Consensus       213 ~~~~~~~~~~-----~p~~~~~~~~~  233 (243)
T 2q7f_A          213 LEMLDKAIDI-----QPDHMLALHAK  233 (243)
T ss_dssp             HHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             HHHHHHHHcc-----CcchHHHHHHH
Confidence            9999999985     45565544433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.77  E-value=9.3e-17  Score=152.41  Aligned_cols=219  Identities=15%  Similarity=0.147  Sum_probs=176.9

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh----cCCcchhHHHHHHHHHHHHhcC
Q 013549          105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCLQLCEKHK  180 (441)
Q Consensus       105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~----~G~~~~A~~l~~~~L~i~~~~~  180 (441)
                      |.-+.++..+|.+|..+|++++|++.|+++++...      ..++.+++.+|..    ++++++|..++++++++-   .
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~   73 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y   73 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C
Confidence            34467899999999999999999999999987221      2478889999999    999999999999987441   1


Q ss_pred             CCcchhhhhhHhHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHH
Q 013549          181 PENYKTYGAVNSRANAVKGLVELA----HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKV  252 (441)
Q Consensus       181 ~~~~~~~~~l~~~a~al~gl~~~~----qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rA  252 (441)
                                 ..+....|.++..    +|++++|+.+|++++...  ...+..++|.+|..    +|++++|+.+|++|
T Consensus        74 -----------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a  140 (273)
T 1ouv_A           74 -----------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA  140 (273)
T ss_dssp             -----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence                       1223356888888    999999999999999853  45677889999999    99999999999999


Q ss_pred             HHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 013549          253 IEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCL  328 (441)
Q Consensus       253 L~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nL  328 (441)
                      ++.     +     .            ..++.+||.+|..    ++++++|.++|++|++.       ++   ..++.+|
T Consensus       141 ~~~-----~-----~------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l  188 (273)
T 1ouv_A          141 CDL-----N-----D------------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNA  188 (273)
T ss_dssp             HHT-----T-----C------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHH
T ss_pred             Hhc-----C-----c------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHH
Confidence            975     1     0            1357899999999    99999999999999975       23   3678999


Q ss_pred             HHHHHH----hhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH----hccHHHHHHHh
Q 013549          329 ALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQ  392 (441)
Q Consensus       329 a~ly~~----qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~----~g~yaeal~~~  392 (441)
                      |.+|..    ++++++|      ...|++++++      ++   .....+++.++..    .+++++|+..+
T Consensus       189 g~~~~~g~~~~~~~~~A------~~~~~~a~~~------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~  245 (273)
T 1ouv_A          189 GNMYHHGEGATKNFKEA------LARYSKACEL------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENF  245 (273)
T ss_dssp             HHHHHHTCSSCCCHHHH------HHHHHHHHHT------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred             HHHHHcCCCCCccHHHH------HHHHHHHHhC------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence            999999    9999887      8899999876      11   3456688888887    77776666654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.77  E-value=1.4e-17  Score=153.19  Aligned_cols=203  Identities=17%  Similarity=0.156  Sum_probs=149.1

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549          105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY  184 (441)
Q Consensus       105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~  184 (441)
                      ...+..+..+|..+..+|+|++|+..|++++...+..    ..++..++.++..+|++++|..++++++++...    . 
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~-   90 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALELDSS----A-   90 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C-
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----c-
Confidence            3578899999999999999999999999998866543    346788999999999999999999998755211    0 


Q ss_pred             hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCC
Q 013549          185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD  264 (441)
Q Consensus       185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~  264 (441)
                             .......+.++..+|++++|+.+|++++...+....+...+|.++..+|++++|+.+|++++++.   ..   
T Consensus        91 -------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~---  157 (243)
T 2q7f_A           91 -------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---EN---  157 (243)
T ss_dssp             -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TT---
T ss_pred             -------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---Cc---
Confidence                   11223457778899999999999999999666667778889999999999999999999999871   11   


Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549          265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL  344 (441)
Q Consensus       265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~  344 (441)
                                    ...++.++|.+|..+|+|++|+.+|++++.+        +|....++.++|.+|..+|++++|   
T Consensus       158 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A---  212 (243)
T 2q7f_A          158 --------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKA---  212 (243)
T ss_dssp             --------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHH---
T ss_pred             --------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHH---
Confidence                          1235789999999999999999999999986        344456789999999999999987   


Q ss_pred             HHHHHHHHHHHHH
Q 013549          345 LIQEGLYRRALEF  357 (441)
Q Consensus       345 ~~Ae~ly~rAL~i  357 (441)
                         ...|++++++
T Consensus       213 ---~~~~~~~~~~  222 (243)
T 2q7f_A          213 ---LEMLDKAIDI  222 (243)
T ss_dssp             ---HHHHHHHHHH
T ss_pred             ---HHHHHHHHcc
Confidence               8999999887

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.76  E-value=1.7e-17  Score=161.14  Aligned_cols=224  Identities=10%  Similarity=-0.006  Sum_probs=164.7

Q ss_pred             CCchHHHHHHHH-HHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549           56 LNSNPVVLQMIN-YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        56 ~~h~~~a~~m~n-~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      |+-++-|...-+ -+.++ +   ..|+|++|+..|++++.+..+..  +++..+.+++++|.+|..+|+|++|++.|+++
T Consensus        30 ~~~~~~A~~~~~~a~~~~-~---~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A  103 (292)
T 1qqe_A           30 SYKFEEAADLCVQAATIY-R---LRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHH-H---HTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHH-H---HcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            553455555555 55555 3   47899999999999999987663  66788999999999999999999999999999


Q ss_pred             HHhhhhhhhhh---HHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549          135 ENFKNSILGVR---VAAMEALAGLYLQL-GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES  210 (441)
Q Consensus       135 l~i~~~~lg~~---~~al~~La~l~~~~-G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e  210 (441)
                      +.+.+.. |..   ..++++++.+|..+ |++++|..++++++++.......      ..........|.++..+|+|++
T Consensus       104 l~l~~~~-g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A          104 IQIFTHR-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV------ALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHHHHhCCHHH
Confidence            9998763 332   34788999999996 99999999999999998654421      1111122345788889999999


Q ss_pred             HHHHHHhhhhccCCch-------HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549          211 AESFFKGLQEEEGCTG-------SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT  283 (441)
Q Consensus       211 Ae~l~~~aL~~~~~~~-------~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al  283 (441)
                      |..+|++++...+...       .+..++|.++..+|++++|+..|++++++.   ..      +..    ..  ....+
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~------~~~----~~--~~~~l  241 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED---PN------FAD----SR--ESNFL  241 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------------------HHHH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC------CCC----cH--HHHHH
Confidence            9999999999332221       245678899999999999999999999872   11      110    01  12345


Q ss_pred             HHHHHHHH--HcCCHHHHHHHHHHHH
Q 013549          284 FALGQLEA--HMGNFGDAEEILTRTL  307 (441)
Q Consensus       284 ~nLg~ly~--~qG~y~eAe~l~~rAL  307 (441)
                      .+|+..|.  +.++|++|...|.+++
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            67887775  5667777766665543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.76  E-value=4.2e-18  Score=176.59  Aligned_cols=121  Identities=13%  Similarity=0.022  Sum_probs=103.0

Q ss_pred             HHcCCHHHHHHHHHhhhh-----ccCCch---HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          203 LAHGNLESAESFFKGLQE-----EEGCTG---SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~-----~~~~~~---~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                      ..||+|++|+.+|+++|+     -++.|+   .+..+++.+|..||+|++|+++|+|+|+|+++.        +|+.|  
T Consensus       298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~--------lg~~H--  367 (429)
T 3qwp_A          298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF--------FPGSH--  367 (429)
T ss_dssp             HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--------SCSSC--
T ss_pred             HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH--------cCCCC--
Confidence            379999999999999998     233343   445778999999999999999999999997553        44322  


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549          275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK  335 (441)
Q Consensus       275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q  335 (441)
                      |+  +..+++|||.+|..||+|++|+++|+|||+|+++++|++||.|+.+++||+.+....
T Consensus       368 p~--~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          368 PV--RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             hH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            32  455789999999999999999999999999999999999999999999999988654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.76  E-value=5.2e-17  Score=165.73  Aligned_cols=223  Identities=5%  Similarity=-0.089  Sum_probs=177.6

Q ss_pred             CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhcCC
Q 013549          103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ-DDTSSVVADKCLQLCEKHKP  181 (441)
Q Consensus       103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~-~~~A~~l~~~~L~i~~~~~~  181 (441)
                      -.|..+.+++++|.++..+|+|++|+..|++++.+.+...    .++++++.++..+|+ +++|...+++++.+--+.  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~--  165 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--  165 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--
Confidence            4678899999999999999999999999999999887642    478999999999997 999999999997553111  


Q ss_pred             CcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          182 ENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       182 ~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                                ..+....|.++..+|+|++|+.+|+++|...+....+..++|.++..+|+|++|+..|+++|++   .- 
T Consensus       166 ----------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P-  231 (382)
T 2h6f_A          166 ----------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DV-  231 (382)
T ss_dssp             ----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CT-
T ss_pred             ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CC-
Confidence                      1122346888889999999999999999977778888899999999999999999999999998   11 


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAH-MGNFGDA-----EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK  335 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~-qG~y~eA-----e~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q  335 (441)
                          .            ...+++++|.+|.. .|++++|     +++|++|+.+        .|+-...++++|.+|..+
T Consensus       232 ----~------------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~  287 (382)
T 2h6f_A          232 ----R------------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDR  287 (382)
T ss_dssp             ----T------------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTT
T ss_pred             ----C------------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHcc
Confidence                1            13468999999999 5555888     4889998885        355567899999999998


Q ss_pred             h--chhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhc
Q 013549          336 A--MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG  383 (441)
Q Consensus       336 G--~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g  383 (441)
                      |  ++++|      ...++++    + ..   |+....+.+++.++..+|
T Consensus       288 g~~~~~~a------~~~~~~~----~-~~---p~~~~al~~La~~~~~~~  323 (382)
T 2h6f_A          288 GLSKYPNL------LNQLLDL----Q-PS---HSSPYLIAFLVDIYEDML  323 (382)
T ss_dssp             CGGGCHHH------HHHHHHH----T-TT---CCCHHHHHHHHHHHHHHH
T ss_pred             CccchHHH------HHHHHHh----c-cC---CCCHHHHHHHHHHHHHHh
Confidence            8  46665      5555443    2 23   333346667888887764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.75  E-value=2.9e-16  Score=141.90  Aligned_cols=213  Identities=12%  Similarity=0.057  Sum_probs=168.1

Q ss_pred             CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549          103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE  182 (441)
Q Consensus       103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~  182 (441)
                      +.|....++..+|.++..+|+|++|++.|++++.+.+..    ..++..++.++..+|++++|..++++++.+...    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----   74 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD----   74 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----
Confidence            467888999999999999999999999999998876543    246788999999999999999999998765311    


Q ss_pred             cchhhhhhHhHHHHHHHHHHHHc-CCHHHHHHHHHhhhh--ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549          183 NYKTYGAVNSRANAVKGLVELAH-GNLESAESFFKGLQE--EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ  259 (441)
Q Consensus       183 ~~~~~~~l~~~a~al~gl~~~~q-G~y~eAe~l~~~aL~--~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~  259 (441)
                      .        .......+.++... |++++|+.+|++++.  ..+....+...+|.++..+|++++|+.+|++++++.   
T Consensus        75 ~--------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---  143 (225)
T 2vq2_A           75 S--------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---  143 (225)
T ss_dssp             C--------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred             C--------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence            1        11223457777889 999999999999999  444445667888999999999999999999999871   


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHHHHhhch
Q 013549          260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS-HHPKVGVVLTCLALMFRNKAMQ  338 (441)
Q Consensus       260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~-~HP~va~~l~nLa~ly~~qG~~  338 (441)
                      ..                 ...++.++|.+|..+|+|++|.++|++++.+.     + +++.   .+..++.+|...|++
T Consensus       144 ~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~  198 (225)
T 2vq2_A          144 PQ-----------------FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQAD---DLLLGWKIAKALGNA  198 (225)
T ss_dssp             TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCCHH---HHHHHHHHHHHTTCH
T ss_pred             CC-----------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCHH---HHHHHHHHHHhcCcH
Confidence            11                 12357899999999999999999999999853     3 4444   467888999999998


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549          339 EHSSALLIQEGLYRRALEFLKAPPLESEGVE  369 (441)
Q Consensus       339 eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~  369 (441)
                      ++|      ..++++++++    .|+++...
T Consensus       199 ~~a------~~~~~~~~~~----~p~~~~~~  219 (225)
T 2vq2_A          199 QAA------YEYEAQLQAN----FPYSEELQ  219 (225)
T ss_dssp             HHH------HHHHHHHHHH----CTTCHHHH
T ss_pred             HHH------HHHHHHHHHh----CCCCHHHH
Confidence            876      6667666554    35555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=3.1e-16  Score=153.19  Aligned_cols=223  Identities=12%  Similarity=0.112  Sum_probs=158.9

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh--hhhhhhhHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK--NSILGVRVAAMEALAGL  155 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~--~~~lg~~~~al~~La~l  155 (441)
                      .+|+|++|+..++.          .++| ...++..++.++...|++++|++.+++.+...  +..    ...+..++.+
T Consensus        46 ~~g~~~~al~~~~~----------~~~~-~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~----~~~~~~la~~  110 (291)
T 3mkr_A           46 AQRKYGVVLDEIKP----------SSAP-ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN----TTFLLMAASI  110 (291)
T ss_dssp             HTTCHHHHHHHSCT----------TSCH-HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC----HHHHHHHHHH
T ss_pred             HCCCHHHHHHHhcc----------cCCh-hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC----HHHHHHHHHH
Confidence            46788888874433          1334 56888889999999999999999998876542  221    2356778888


Q ss_pred             HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCch--HHHHHHH
Q 013549          156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTG--SAALSYG  233 (441)
Q Consensus       156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~--~~a~~~a  233 (441)
                      +.++|++++|..++++         +..      .  .+....+.++..+|++++|+..|++++...+...  ..+..+.
T Consensus       111 ~~~~g~~~~Al~~l~~---------~~~------~--~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~  173 (291)
T 3mkr_A          111 YFYDQNPDAALRTLHQ---------GDS------L--ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWV  173 (291)
T ss_dssp             HHHTTCHHHHHHHHTT---------CCS------H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhC---------CCC------H--HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHH
Confidence            8899998888776654         111      1  1223456777889999999999999988443332  2223344


Q ss_pred             HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      .++...|++++|..+|+++++..   .     +            ....++++|.+|..+|+|++|++.|+++|.+.   
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~---p-----~------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---  230 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKC---S-----P------------TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---  230 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHS---C-----C------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHhCchHHHHHHHHHHHHHHhC---C-----C------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence            55556789999999999998771   1     1            12457889999999999999999999999753   


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549          314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE  369 (441)
Q Consensus       314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~  369 (441)
                        |++|+   ++.|+|.++..+|+++++     ++.++++++++    .|+||.+.
T Consensus       231 --p~~~~---~l~~l~~~~~~~g~~~ea-----a~~~~~~~~~~----~P~~~~~~  272 (291)
T 3mkr_A          231 --SGHPE---TLINLVVLSQHLGKPPEV-----TNRYLSQLKDA----HRSHPFIK  272 (291)
T ss_dssp             --TTCHH---HHHHHHHHHHHTTCCHHH-----HHHHHHHHHHH----CTTCHHHH
T ss_pred             --CCCHH---HHHHHHHHHHHcCCCHHH-----HHHHHHHHHHh----CCCChHHH
Confidence              45554   588899999999998764     36788888776    46777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.75  E-value=2.2e-17  Score=181.48  Aligned_cols=178  Identities=11%  Similarity=0.093  Sum_probs=148.8

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      .+|+.+..++|+|..+.    .+|+|++|+.+|++++++.        |..+.+++|||.+|..+|+|++|++.|+++++
T Consensus         4 s~P~~a~al~nLG~~~~----~~G~~~eAi~~~~kAl~l~--------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~   71 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKR----EQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR   71 (723)
T ss_dssp             --CHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            37888899999999983    4799999999999999864        44577899999999999999999999999987


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK  216 (441)
Q Consensus       137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~  216 (441)
                      +.+...    .++                                              ..+|.++..+|+|++|+..|+
T Consensus        72 l~P~~~----~a~----------------------------------------------~nLg~~l~~~g~~~~A~~~~~  101 (723)
T 4gyw_A           72 ISPTFA----DAY----------------------------------------------SNMGNTLKEMQDVQGALQCYT  101 (723)
T ss_dssp             HCTTCH----HHH----------------------------------------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCCCCH----HHH----------------------------------------------HHHHHHHHHcCCHHHHHHHHH
Confidence            765421    011                                              124666778999999999999


Q ss_pred             hhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCH
Q 013549          217 GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF  296 (441)
Q Consensus       217 ~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y  296 (441)
                      +++...+....+..++|.+|..+|+|++|+..|++||++   .-.                 ...+++|||.+|..+|+|
T Consensus       102 kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~-----------------~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A          102 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPD-----------------FPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSC-----------------CHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----------------ChHHHhhhhhHHHhcccH
Confidence            999977777888899999999999999999999999998   111                 124689999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCC
Q 013549          297 GDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       297 ~eAe~l~~rAL~i~e~~lG~  316 (441)
                      ++|++.|++++++..+.+..
T Consensus       162 ~~A~~~~~kal~l~~~~~~~  181 (723)
T 4gyw_A          162 TDYDERMKKLVSIVADQLEK  181 (723)
T ss_dssp             TTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhChhHHhh
Confidence            99999999999999876543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.75  E-value=2.3e-17  Score=171.99  Aligned_cols=210  Identities=13%  Similarity=0.082  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549           82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNY-VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG  160 (441)
Q Consensus        82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y-~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G  160 (441)
                      +++++..+++..        ...|..+..+.++|.+|..+|+| ++|++.|++++.+.+..    ..++.+++.+|..+|
T Consensus        84 ~~~al~~l~~~~--------~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g  151 (474)
T 4abn_A           84 MEKTLQQMEEVL--------GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKG  151 (474)
T ss_dssp             HHHHHHHHHHHH--------TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh--------ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC
Confidence            445555555443        34556789999999999999999 99999999999887653    247899999999999


Q ss_pred             CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHc---------CCHHHHHHHHHhhhhccCCchHHHHH
Q 013549          161 QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH---------GNLESAESFFKGLQEEEGCTGSAALS  231 (441)
Q Consensus       161 ~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~q---------G~y~eAe~l~~~aL~~~~~~~~~a~~  231 (441)
                      ++++|..++++++++.    +.         ..+....|.++..+         |+|++|+.+|++++...+....+..+
T Consensus       152 ~~~~A~~~~~~al~~~----p~---------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  218 (474)
T 4abn_A          152 DVTSAHTCFSGALTHC----KN---------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYI  218 (474)
T ss_dssp             CHHHHHHHHHHHHTTC----CC---------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHhhC----CC---------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999997442    21         12223457777788         99999999999999977777788889


Q ss_pred             HHHHHHHc--------cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          232 YGEYLHAT--------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL  303 (441)
Q Consensus       232 ~a~~~~~q--------G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~  303 (441)
                      +|.+|..+        |+|++|+..|++|+++.   ..     .       +.  ...++++||.+|..+|+|++|++.|
T Consensus       219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~-----~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~  281 (474)
T 4abn_A          219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD---RK-----A-------SS--NPDLHLNRATLHKYEESYGEALEGF  281 (474)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC---GG-----G-------GG--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHhC---CC-----c-------cc--CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999        99999999999999981   10     0       01  1346899999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          304 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       304 ~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      ++|+.+        .|.....+.+++.++..+|++++|
T Consensus       282 ~~al~l--------~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          282 SQAAAL--------DPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             HHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999987        355557889999999999998887

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=2.3e-16  Score=154.00  Aligned_cols=241  Identities=14%  Similarity=0.066  Sum_probs=179.8

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWR-GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~-a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      .|+|++|+...++...        ..|.. .....-++..|..+|+|++|+..++..   .    .....++..++.++.
T Consensus        12 ~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~----~~~~~a~~~la~~~~   76 (291)
T 3mkr_A           12 IGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S----APELQAVRMFAEYLA   76 (291)
T ss_dssp             TTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C----ChhHHHHHHHHHHHc
Confidence            6899999999988654        23443 345677799999999999999877552   1    122346777888888


Q ss_pred             hcCCcchhHHHHHHHHHHHHhc-CCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKH-KPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL  236 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~-~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~  236 (441)
                      ..|++++|...+++.+   ... .|..        .......|.++..+|++++|+..|++     +....+...++.+|
T Consensus        77 ~~~~~~~A~~~l~~ll---~~~~~P~~--------~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~  140 (291)
T 3mkr_A           77 SHSRRDAIVAELDREM---SRSVDVTN--------TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQIL  140 (291)
T ss_dssp             CSTTHHHHHHHHHHHH---HSCCCCSC--------HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHH---hcccCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence            8898888887776654   121 1211        11234568888999999999999998     44556778889999


Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      ..+|++++|+..|++++++   .               |+.........+..++..+|+|++|..+|++++..       
T Consensus       141 ~~~g~~~~A~~~l~~~~~~---~---------------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-------  195 (291)
T 3mkr_A          141 LKLDRLDLARKELKKMQDQ---D---------------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-------  195 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---C---------------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------
T ss_pred             HHCCCHHHHHHHHHHHHhh---C---------------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-------
Confidence            9999999999999999987   1               11111111122334555679999999999999975       


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHH
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL  389 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal  389 (441)
                       +|.....++++|.+|..+|++++|      +..|+++|++.    |++++   .+.|++.++..+|++.++.
T Consensus       196 -~p~~~~~~~~la~~~~~~g~~~eA------~~~l~~al~~~----p~~~~---~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          196 -CSPTLLLLNGQAACHMAQGRWEAA------EGVLQEALDKD----SGHPE---TLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             -SCCCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCHH---HHHHHHHHHHHTTCCHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCHH---HHHHHHHHHHHcCCCHHHH
Confidence             566677999999999999999987      99999999873    45554   5788999999999987643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.73  E-value=2.9e-16  Score=148.49  Aligned_cols=206  Identities=14%  Similarity=0.069  Sum_probs=165.0

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      .|..+..+.++|..+..+|+|++|++.|++++...+.. .....++..++.+|..+|++++|...+++++++.-...   
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~---   86 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP---   86 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc---
Confidence            45667899999999999999999999999998876543 11234788999999999999999999999976542211   


Q ss_pred             chhhhhhHhHHHHHHHHHHHH--------cCCHHHHHHHHHhhhhccCCchHHH-----------------HHHHHHHHH
Q 013549          184 YKTYGAVNSRANAVKGLVELA--------HGNLESAESFFKGLQEEEGCTGSAA-----------------LSYGEYLHA  238 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~--------qG~y~eAe~l~~~aL~~~~~~~~~a-----------------~~~a~~~~~  238 (441)
                            ....+....|.++..        +|++++|+..|++++...+....+.                 ..+|.+|..
T Consensus        87 ------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  160 (261)
T 3qky_A           87 ------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER  160 (261)
T ss_dssp             ------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  111223356888888        9999999999999999444332222                 677999999


Q ss_pred             ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHH
Q 013549          239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM----------GNFGDAEEILTRTLT  308 (441)
Q Consensus       239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q----------G~y~eAe~l~~rAL~  308 (441)
                      +|+|++|+..|+++++..   ..   .+           ....++.++|.+|..+          |+|++|+..|++++.
T Consensus       161 ~g~~~~A~~~~~~~l~~~---p~---~~-----------~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          161 RELYEAAAVTYEAVFDAY---PD---TP-----------WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHC---TT---ST-----------THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHC---CC---Cc-----------hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            999999999999999872   11   11           0234688999999987          999999999999998


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      .+     |+||.+..+...|+.++..+++++++
T Consensus       224 ~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          224 IF-----PDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HC-----TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HC-----CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            65     89999999999999999999998876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.72  E-value=2.6e-15  Score=135.62  Aligned_cols=219  Identities=16%  Similarity=0.100  Sum_probs=173.3

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      +.|..+..+..+|..+.+    .|+|++|+.++++++.+.        |....++..+|.+|..+|+|++|++.|++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   70 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMR----GQDYRQATASIEDALKSD--------PKNELAWLVRAEIYQYLKVNDKAQESFRQALS   70 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            456777788888888743    689999999999999854        33366899999999999999999999999988


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549          137 FKNSILGVRVAAMEALAGLYLQL-GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF  215 (441)
Q Consensus       137 i~~~~lg~~~~al~~La~l~~~~-G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~  215 (441)
                      +.+..    ...+.+++.++..+ |++++|..++++++.     .+..+..     .......+.++..+|++++|+.+|
T Consensus        71 ~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~  136 (225)
T 2vq2_A           71 IKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA-----DPTYPTP-----YIANLNKGICSAKQGQFGLAEAYL  136 (225)
T ss_dssp             HCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-----STTCSCH-----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-----CcCCcch-----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            76543    23678899999999 999999999998875     1111111     122234677888999999999999


Q ss_pred             HhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC
Q 013549          216 KGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN  295 (441)
Q Consensus       216 ~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~  295 (441)
                      ++++...+....+...+|.++..+|++++|..+|++++.+.   ..    ..            ...+..++.++...|+
T Consensus       137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----~~------------~~~~~~~~~~~~~~~~  197 (225)
T 2vq2_A          137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV---EV----LQ------------ADDLLLGWKIAKALGN  197 (225)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CS----CC------------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CC------------HHHHHHHHHHHHhcCc
Confidence            99999666667778889999999999999999999999872   10    01            1245788899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Q 013549          296 FGDAEEILTRTLTKTEELFGSHHPKVGVVL  325 (441)
Q Consensus       296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l  325 (441)
                      +++|..++++++.+     .|++|.+...+
T Consensus       198 ~~~a~~~~~~~~~~-----~p~~~~~~~~l  222 (225)
T 2vq2_A          198 AQAAYEYEAQLQAN-----FPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-----CCCCHHHHHHh
Confidence            99999999988764     57888776554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.72  E-value=3.5e-16  Score=139.39  Aligned_cols=169  Identities=14%  Similarity=0.134  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      +++.-..++|..|.    .+|+|++|+..|++++.+.        |.-..++.++|.+|..+|++++|++.+++++...+
T Consensus         3 e~~~iy~~lG~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~   70 (184)
T 3vtx_A            3 ETTTIYMDIGDKKR----TKGDFDGAIRAYKKVLKAD--------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT   70 (184)
T ss_dssp             -CHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            45666788999983    4799999999999999854        44467899999999999999999999998755443


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 013549          140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQ  219 (441)
Q Consensus       140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL  219 (441)
                      ...                                                  .+....|..+...+++++|...+++++
T Consensus        71 ~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~a~~~~~~a~  100 (184)
T 3vtx_A           71 TSA--------------------------------------------------EAYYILGSANFMIDEKQAAIDALQRAI  100 (184)
T ss_dssp             CCH--------------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhH--------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            210                                                  001123556678999999999999999


Q ss_pred             hccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549          220 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA  299 (441)
Q Consensus       220 ~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA  299 (441)
                      ...+....+...+|.+|..+|+|++|+..|++++++   ..     .            ...++.+||.+|..+|+|++|
T Consensus       101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p-----~------------~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A          101 ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KP-----G------------FIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cc-----h------------hhhHHHHHHHHHHHCCCHHHH
Confidence            976767778888999999999999999999999988   11     1            124678999999999999999


Q ss_pred             HHHHHHHHHHH
Q 013549          300 EEILTRTLTKT  310 (441)
Q Consensus       300 e~l~~rAL~i~  310 (441)
                      ++.|++||++.
T Consensus       161 ~~~~~~al~~~  171 (184)
T 3vtx_A          161 VKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhCC
Confidence            99999999864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.71  E-value=1.4e-15  Score=147.07  Aligned_cols=194  Identities=10%  Similarity=0.034  Sum_probs=147.0

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      +|.....+.+.+..+..+|+|++|++.+++++...+... ..                       ...            
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~~-----------------------~~~------------  114 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EF-----------------------QQF------------  114 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-HH-----------------------HHH------------
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-hH-----------------------HHH------------
Confidence            456667788888899999999999999988876543210 00                       000            


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc----cCCc--hHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Q 013549          184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE----EGCT--GSAALSYGEYLHATRNFLLAKKFYQKVIEVLA  257 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~----~~~~--~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~  257 (441)
                              .......|.++..+|+|++|+.+|++++..    ....  ..+..++|.+|..+|+|++|+.+|++|+++..
T Consensus       115 --------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~  186 (293)
T 2qfc_A          115 --------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             --------HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                    000012466677899999999999999971    1111  34557789999999999999999999999964


Q ss_pred             hhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549          258 EQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       258 ~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~  337 (441)
                      ....             .....+.+++|+|.+|..+|+|++|.++|++|+.+..+  ..+++.++.++.++|.+|..+|+
T Consensus       187 ~~~~-------------~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~g~  251 (293)
T 2qfc_A          187 ALHD-------------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHHTTC
T ss_pred             hcCc-------------cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHcCC
Confidence            3211             11122357899999999999999999999999999854  56778899999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          338 QEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       338 ~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                      +++|     .+..|++|+++.+..
T Consensus       252 ~~~A-----i~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          252 EEAE-----IEDAYKKASFFFDIL  270 (293)
T ss_dssp             CHHH-----HHHHHHHHHHHHHHT
T ss_pred             cHHH-----HHHHHHHHHHHHHHh
Confidence            9886     167799999998753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.71  E-value=7.1e-16  Score=160.62  Aligned_cols=197  Identities=12%  Similarity=0.016  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHhcCCc-chhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Q 013549          146 VAAMEALAGLYLQLGQD-DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC  224 (441)
Q Consensus       146 ~~al~~La~l~~~~G~~-~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~  224 (441)
                      ...+..++.++..+|++ ++|+.++++++++.    +..        ..+...+|.++..+|+|++|+.+|++++...+.
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  169 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PEL--------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN  169 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45788899999999999 99999999998653    111        122345688889999999999999999996555


Q ss_pred             chHHHHHHHHHHHHc---------cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc--
Q 013549          225 TGSAALSYGEYLHAT---------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM--  293 (441)
Q Consensus       225 ~~~~a~~~a~~~~~q---------G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q--  293 (441)
                       ..+..++|.++..+         |+|++|+.+|++|+++   ...                 ...++++||.+|..+  
T Consensus       170 -~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~-----------------~~~~~~~lg~~~~~~~~  228 (474)
T 4abn_A          170 -KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVL-----------------DGRSWYILGNAYLSLYF  228 (474)
T ss_dssp             -HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCC-----------------CHHHHHHHHHHHHHHHH
Confidence             57778899999999         9999999999999998   111                 124678999999999  


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcc
Q 013549          294 ------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG  367 (441)
Q Consensus       294 ------G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~  367 (441)
                            |+|++|+..|++|+.+.     |.+|.....+.+||.+|..+|++++|      ...|++|+++.    |+++ 
T Consensus       229 ~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~----p~~~-  292 (474)
T 4abn_A          229 NTGQNPKISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEA------LEGFSQAAALD----PAWP-  292 (474)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCH-
T ss_pred             hhccccchHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCH-
Confidence                  99999999999999982     22338889999999999999999987      89999999873    3333 


Q ss_pred             hHhhhccHHHHHHHhccHHHHHHHhh
Q 013549          368 VETKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       368 ~~~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                        ....+++.++...|++++|+....
T Consensus       293 --~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          293 --EPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhc
Confidence              456788999999999999998763

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.7e-15  Score=152.22  Aligned_cols=242  Identities=10%  Similarity=0.064  Sum_probs=185.7

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCC---------CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh--hH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQ---------LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RV  146 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g---------~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~--~~  146 (441)
                      .+|+|.+|+..|.+++...+....         ...+....++.+||.+|..+|+|++|++.|++++.+....-..  ..
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   95 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK   95 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence            468999999999999997765432         2245567789999999999999999999999999887653111  12


Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----
Q 013549          147 AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE-----  221 (441)
Q Consensus       147 ~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-----  221 (441)
                      ...++++.++...|+++++..++++++.+.......      ....+....++.++..+|+|++|..++++++..     
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV------FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC------SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc------HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            345667777888899999999999999988766522      112233345677888999999999999999871     


Q ss_pred             -cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHH
Q 013549          222 -EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE  300 (441)
Q Consensus       222 -~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe  300 (441)
                       .+....+....+.+|..+|+|++|..+|++++.+......             |.........++|.++..+|+|++|.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~y~~A~  236 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-------------PTQTVAELDLMSGILHCEDKDYKTAF  236 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-------------CHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-------------chHHHHHHHHHHHHHHHHHHhHHHHH
Confidence             1222344567799999999999999999999999532111             22223445678999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhch
Q 013549          301 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ  338 (441)
Q Consensus       301 ~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~  338 (441)
                      .+|.+++.++.......++..+........++.-....
T Consensus       237 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  274 (434)
T 4b4t_Q          237 SYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNL  274 (434)
T ss_dssp             HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999988777666666666555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.71  E-value=1.6e-15  Score=139.91  Aligned_cols=159  Identities=16%  Similarity=0.103  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKN-SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~-~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                      ..+.++|.++..+|+|++|++.|++++.+.+ ...                       .                     
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------------~---------------------   43 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS-----------------------V---------------------   43 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH-----------------------H---------------------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc-----------------------H---------------------
Confidence            7899999999999999999999999876654 110                       0                     


Q ss_pred             hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549          188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT  267 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~  267 (441)
                            .....|.++..+|+|++|+..|++++...+....+...+|.+|..+|+|++|+..|++++++.   ..     .
T Consensus        44 ------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~-----~  109 (228)
T 4i17_A           44 ------TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV---PG-----N  109 (228)
T ss_dssp             ------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-----C
T ss_pred             ------HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CC-----c
Confidence                  001246777889999999999999999777777888899999999999999999999999982   11     1


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch--HHHHHHHHHHHHHHhhch
Q 013549          268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK--VGVVLTCLALMFRNKAMQ  338 (441)
Q Consensus       268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~--va~~l~nLa~ly~~qG~~  338 (441)
                           .........++.++|.++..+|+|++|++.|++|+.+        +|+  ...++.+||.+|..+|+.
T Consensus       110 -----~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          110 -----ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--------TSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--------CCCcccHHHHHHHHHHHHHHHHH
Confidence                 0000112246789999999999999999999999985        788  889999999999999987

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.71  E-value=1e-15  Score=137.28  Aligned_cols=168  Identities=13%  Similarity=0.074  Sum_probs=131.9

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      +..|+|++|+..++...........+...+|.++..+|+|++|+.+|++++++.++...              ......+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~   68 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--------------HTAEHRA   68 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--------------HHHHHHH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--------------cHHHHHH
Confidence            46899999999555444433344566778899999999999999999999999643211              1123457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP  362 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~  362 (441)
                      ++++|.+|..+|+|++|+++|++++.+.+ ..|++++..+.++.++|.+|..+|++++|      +..+++++++.+..+
T Consensus        69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~~~~~  141 (203)
T 3gw4_A           69 LHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGA------RQEYEKSLVYAQQAD  141 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHhcc
Confidence            89999999999999999999999999998 55656668899999999999999999987      899999999976432


Q ss_pred             CCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          363 LESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       363 ~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                       +....+..+.+++.++..+|+|++|+...
T Consensus       142 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~  170 (203)
T 3gw4_A          142 -DQVAIACAFRGLGDLAQQEKNLLEAQQHW  170 (203)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence             23335566789999999999998887665

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.70  E-value=1.6e-15  Score=141.93  Aligned_cols=228  Identities=11%  Similarity=-0.009  Sum_probs=173.9

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      +.|..+..+.++|..+.    ..|+|++|+.+|++++.+.        |....++.++|.+|..+|+|++|++.|++++.
T Consensus        38 ~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  105 (275)
T 1xnf_A           38 TDDERAQLLYERGVLYD----SLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE  105 (275)
T ss_dssp             CHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHH----HcccHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            45778888999999984    3689999999999999863        33456899999999999999999999999998


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK  216 (441)
Q Consensus       137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~  216 (441)
                      +.+..    ..++.+++.+|..+|++++|..++++++.+.    +...    .    .....++. ..+|++++|..+|+
T Consensus       106 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~----~----~~~~~~~~-~~~~~~~~A~~~~~  168 (275)
T 1xnf_A          106 LDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDP----F----RSLWLYLA-EQKLDEKQAKEVLK  168 (275)
T ss_dssp             HCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCH----H----HHHHHHHH-HHHHCHHHHHHHHH
T ss_pred             cCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCh----H----HHHHHHHH-HHhcCHHHHHHHHH
Confidence            87653    2478899999999999999999999997643    1110    0    11122332 56799999999999


Q ss_pred             hhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCH
Q 013549          217 GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF  296 (441)
Q Consensus       217 ~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y  296 (441)
                      +++...+... ....++.++..++++++|...+++++.......              +.  ...++.++|.+|..+|++
T Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~--~~~~~~~la~~~~~~g~~  231 (275)
T 1xnf_A          169 QHFEKSDKEQ-WGWNIVEFYLGNISEQTLMERLKADATDNTSLA--------------EH--LSETNFYLGKYYLSLGDL  231 (275)
T ss_dssp             HHHHHSCCCS-THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH--------------HH--HHHHHHHHHHHHHHTTCH
T ss_pred             HHHhcCCcch-HHHHHHHHHHHhcCHHHHHHHHHHHhccccccc--------------cc--ccHHHHHHHHHHHHcCCH
Confidence            9998433332 234567778889999999999999887621100              11  234678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      ++|..+|++++.+     .|+++.      ..+.++...|++++|
T Consensus       232 ~~A~~~~~~al~~-----~p~~~~------~~~~~~~~l~~~~~a  265 (275)
T 1xnf_A          232 DSATALFKLAVAN-----NVHNFV------EHRYALLELSLLGQD  265 (275)
T ss_dssp             HHHHHHHHHHHTT-----CCTTCH------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC-----CchhHH------HHHHHHHHHHHHHhh
Confidence            9999999999976     243332      236778888888887

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.69  E-value=3.3e-14  Score=147.25  Aligned_cols=266  Identities=11%  Similarity=0.063  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENF  137 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~----qG~y~eA~e~~~ral~i  137 (441)
                      +..+.++|..|..-....+++++|+.+|+++...       .+   ..++.+||.+|..    .+++++|+..|+++.+.
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  144 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------GL---PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            3456677777643112256788888888888752       12   3567788888888    78888888888887665


Q ss_pred             hhhhhhhhHHHHHHHHHHHHh----cCCcchhHHHHHHHHHH------------HHhcC--CCcchhhhhhH--------
Q 013549          138 KNSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCLQL------------CEKHK--PENYKTYGAVN--------  191 (441)
Q Consensus       138 ~~~~lg~~~~al~~La~l~~~----~G~~~~A~~l~~~~L~i------------~~~~~--~~~~~~~~~l~--------  191 (441)
                      ..      ..++.+|+.+|..    .+++++|..+++++++.            +....  ...+.++....        
T Consensus       145 ~~------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~  218 (490)
T 2xm6_A          145 GR------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD  218 (490)
T ss_dssp             TC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            32      1256667777765    66777777777766532            00000  00000000000        


Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhhcccC
Q 013549          192 SRANAVKGLVELA----HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       192 ~~a~al~gl~~~~----qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                      ..+....|.++..    .+++++|..+|+++++..  ...+..++|.+|..    .+++++|..+|++|++.     +  
T Consensus       219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~--  289 (490)
T 2xm6_A          219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----G--  289 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----T--
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----C--
Confidence            0011122333332    455555555555555421  22344555555555    56666666666665432     1  


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh--
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQLEAHM-----GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA--  336 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~q-----G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG--  336 (441)
                                     ...+..+||.+|...     +++++|..+|++|++.       .+|   ..+.+||.+|...|  
T Consensus       290 ---------------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~lg~~y~~~g~~  344 (490)
T 2xm6_A          290 ---------------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------GDA---TAQANLGAIYFRLGSE  344 (490)
T ss_dssp             ---------------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHSCCH
T ss_pred             ---------------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------CCH---HHHHHHHHHHHhCCCc
Confidence                           012456777777777     7777777777777653       233   45677777777655  


Q ss_pred             -chhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH----hccHHHHHHHh
Q 013549          337 -MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQ  392 (441)
Q Consensus       337 -~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~----~g~yaeal~~~  392 (441)
                       ++++|      ..+|++|++.      +++   ....+++.++..    .+++.+|+.++
T Consensus       345 ~~~~~A------~~~~~~a~~~------~~~---~a~~~Lg~~y~~g~g~~~~~~~A~~~~  390 (490)
T 2xm6_A          345 EEHKKA------VEWFRKAAAK------GEK---AAQFNLGNALLQGKGVKKDEQQAAIWM  390 (490)
T ss_dssp             HHHHHH------HHHHHHHHHT------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             ccHHHH------HHHHHHHHHC------CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence             44443      6677777653      222   345567777776    66777777665

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.69  E-value=3.1e-15  Score=144.67  Aligned_cols=207  Identities=10%  Similarity=0.032  Sum_probs=148.2

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549          105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY  184 (441)
Q Consensus       105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~  184 (441)
                      +.....+.+.+..+..+|+|++|+..+++++...+.....                         .              
T Consensus        72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~-------------------------~--------------  112 (293)
T 3u3w_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-------------------------Q--------------  112 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH-------------------------H--------------
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH-------------------------H--------------
Confidence            4556666677777888888888888888775533221000                         0              


Q ss_pred             hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Q 013549          185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAE  258 (441)
Q Consensus       185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~  258 (441)
                          .. .......|.++..+|+|++|..+|++++..   ....   ..+..++|.+|..+|+|++|+.+|++||++..+
T Consensus       113 ----~~-~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  187 (293)
T 3u3w_A          113 ----QF-LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA  187 (293)
T ss_dssp             ----HH-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ----HH-HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence                00 000012355667889999999999999981   1111   234578899999999999999999999998643


Q ss_pred             hcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc-
Q 013549          259 QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM-  337 (441)
Q Consensus       259 ~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~-  337 (441)
                      ...             .......+++|+|.+|..+|+|++|.+++++|+.+..+.  .+++.++.++.++|.+|..+|+ 
T Consensus       188 ~~~-------------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~  252 (293)
T 3u3w_A          188 LHD-------------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYE  252 (293)
T ss_dssp             SSC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTCC
T ss_pred             ccc-------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCCc
Confidence            211             011234578999999999999999999999999999875  5678899999999999999995 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHH
Q 013549          338 QEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV  378 (441)
Q Consensus       338 ~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~  378 (441)
                      +++|      ...|++|+++.+..  +.+.....+.+....
T Consensus       253 ~~~A------~~~~~~Al~i~~~~--~~~~~~~~l~~~~~~  285 (293)
T 3u3w_A          253 EAEI------EDAYKKASFFFDIL--EMHAYKEALVNKISR  285 (293)
T ss_dssp             HHHH------HHHHHHHHHHHHHT--TCTGGGGGGTTC---
T ss_pred             HHHH------HHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence            5887      89999999999753  334445555544333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.69  E-value=3.8e-15  Score=138.27  Aligned_cols=200  Identities=14%  Similarity=0.018  Sum_probs=153.8

Q ss_pred             chh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549          104 ESW-RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE  182 (441)
Q Consensus       104 h~~-~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~  182 (441)
                      .|. .+.++..+|.++..+|+|++|++.|++++.+.+...                                        
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----------------------------------------   71 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----------------------------------------   71 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----------------------------------------
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----------------------------------------
Confidence            344 488999999999999999999999998865532210                                        


Q ss_pred             cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhccc
Q 013549          183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF  262 (441)
Q Consensus       183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~  262 (441)
                                .+....+.++..+|++++|+.+|++++...+....+...++.++..+|++++|+.+|++++..    .. 
T Consensus        72 ----------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~-  136 (252)
T 2ho1_A           72 ----------DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD----TL-  136 (252)
T ss_dssp             ----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC----TT-
T ss_pred             ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC----cc-
Confidence                      001124566778999999999999999966666677788999999999999999999999871    00 


Q ss_pred             CCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhh
Q 013549          263 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS  342 (441)
Q Consensus       263 ~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~  342 (441)
                          .       |.  ...++.++|.+|..+|++++|+.+|++++.+     .   |....++.++|.+|..+|++++| 
T Consensus       137 ----~-------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~la~~~~~~g~~~~A-  194 (252)
T 2ho1_A          137 ----Y-------PE--RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----N---RNQPSVALEMADLLYKEREYVPA-  194 (252)
T ss_dssp             ----C-------TT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---SCCHHHHHHHHHHHHHTTCHHHH-
T ss_pred             ----C-------cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---cccHHHHHHHHHHHHHcCCHHHH-
Confidence                0       11  2346789999999999999999999999986     2   44456788999999999999987 


Q ss_pred             hhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          343 ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       343 ~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                           ...|++++++.    ++.+   ..+..++.++...|++++|....
T Consensus       195 -----~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~g~~~~A~~~~  232 (252)
T 2ho1_A          195 -----RQYYDLFAQGG----GQNA---RSLLLGIRLAKVFEDRDTAASYG  232 (252)
T ss_dssp             -----HHHHHHHHTTS----CCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -----HHHHHHHHHhC----cCcH---HHHHHHHHHHHHccCHHHHHHHH
Confidence                 88898886642    2233   34556788888888888777654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.68  E-value=2.8e-14  Score=147.78  Aligned_cols=267  Identities=15%  Similarity=0.096  Sum_probs=180.3

Q ss_pred             HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 013549           63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~----qG~y~eA~e~~~ral~i~  138 (441)
                      ..+.+++..|.......+++++|+.+|+++...       .+   ..++.+||.+|..    .+++++|++.|+++.+..
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~  181 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG  181 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            345566666633211245677777777777653       12   3457777777776    677777777777776542


Q ss_pred             hhhhhhhHHHHHHHHHHHHh----cCCcchhHHHHHHHHHH------------HHhcC--CCcchhhhhhH--------h
Q 013549          139 NSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCLQL------------CEKHK--PENYKTYGAVN--------S  192 (441)
Q Consensus       139 ~~~lg~~~~al~~La~l~~~----~G~~~~A~~l~~~~L~i------------~~~~~--~~~~~~~~~l~--------~  192 (441)
                      .      ..+..+|+.+|..    .+++++|..+++++++.            .....  ...+.++....        .
T Consensus       182 ~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~  255 (490)
T 2xm6_A          182 N------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS  255 (490)
T ss_dssp             C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred             C------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence            1      1245566666665    56666666666665421            00000  00111110000        1


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc-----cChHHHHHHHHHHHHHHHhhcccC
Q 013549          193 RANAVKGLVELA----HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT-----RNFLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       193 ~a~al~gl~~~~----qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q-----G~y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                      .+...+|.++..    .+++++|..+|+++.+..  .+.+...+|.+|...     +++++|+.+|++|++.     +  
T Consensus       256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~--  326 (490)
T 2xm6_A          256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----G--  326 (490)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----T--
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----C--
Confidence            122235666766    899999999999998742  345778889999888     9999999999999865     1  


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hh
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQLEAHMG---NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KA  336 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG---~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG  336 (441)
                                     ...+..+||.+|...|   ++++|.++|++|++.       .+   ...+.+||.+|..    ++
T Consensus       327 ---------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~  381 (490)
T 2xm6_A          327 ---------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GE---KAAQFNLGNALLQGKGVKK  381 (490)
T ss_dssp             ---------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCC
T ss_pred             ---------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCC
Confidence                           0136789999999977   899999999999864       23   4688999999999    88


Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH----hccHHHHHHHhhc
Q 013549          337 MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQQN  394 (441)
Q Consensus       337 ~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~----~g~yaeal~~~~~  394 (441)
                      ++++|      ..+|++|++.      +++   ....+++.+|..    .+++++|..++.+
T Consensus       382 ~~~~A------~~~~~~A~~~------~~~---~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  428 (490)
T 2xm6_A          382 DEQQA------AIWMRKAAEQ------GLS---AAQVQLGEIYYYGLGVERDYVQAWAWFDT  428 (490)
T ss_dssp             CHHHH------HHHHHHHHHT------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             CHHHH------HHHHHHHHhC------CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            88876      8999999873      223   466789999987    7899988887633

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.68  E-value=8.7e-15  Score=147.05  Aligned_cols=225  Identities=10%  Similarity=0.084  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh-------------hhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 013549          111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSIL-------------GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCE  177 (441)
Q Consensus       111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l-------------g~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~  177 (441)
                      ...-|.-+..+|+|++|++.|+++++..+..-             .....++.+|+.+|..+|++++|..++.+++.+..
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45567788899999999999999988665421             11234688999999999999999999999998876


Q ss_pred             hcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh---c---cCCchHHHHHHHHHHHHccChHHHHHHHHH
Q 013549          178 KHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE---E---EGCTGSAALSYGEYLHATRNFLLAKKFYQK  251 (441)
Q Consensus       178 ~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~---~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~r  251 (441)
                      .....      ........+.+.++..+|++++|..++++++.   .   ......+..++|.+|..+|+|++|..++++
T Consensus        87 ~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  160 (434)
T 4b4t_Q           87 QFAKS------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND  160 (434)
T ss_dssp             TSCHH------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             Hccch------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence            54410      11122234557777789999999999999988   1   122245567889999999999999999999


Q ss_pred             HHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 013549          252 VIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM  331 (441)
Q Consensus       252 AL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l  331 (441)
                      ++.+.   .+..++         +.  .+.++.++|.+|..+|+|++|..+|++++.+..... ..+...+..+.++|.+
T Consensus       161 ~~~~~---~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~  225 (434)
T 4b4t_Q          161 LLREF---KKLDDK---------PS--LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGIL  225 (434)
T ss_dssp             HHHHH---TTSSCS---------TH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHH
T ss_pred             HHHHH---Hhcccc---------hh--HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHH
Confidence            99884   321111         11  345788999999999999999999999999987753 3455678999999999


Q ss_pred             HHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549          332 FRNKAMQEHSSALLIQEGLYRRALEFLKAPP  362 (441)
Q Consensus       332 y~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~  362 (441)
                      |..+|+|++|      ...|.+++++....+
T Consensus       226 ~~~~~~y~~A------~~~~~~a~~~~~~~~  250 (434)
T 4b4t_Q          226 HCEDKDYKTA------FSYFFESFESYHNLT  250 (434)
T ss_dssp             TTSSSCHHHH------HHHHHHHHHHHHHTT
T ss_pred             HHHHHhHHHH------HHHHHHHHHHhhhhh
Confidence            9999999987      889999999986543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.65  E-value=6.7e-15  Score=142.26  Aligned_cols=170  Identities=11%  Similarity=-0.036  Sum_probs=136.5

Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCchH------HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          201 VELAHGNLESAESFFKGLQEEEGCTGS------AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       201 ~~~~qG~y~eAe~l~~~aL~~~~~~~~------~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                      .+..+|+|++|+.+|++++...+..+.      ....++.++..+|+|++|+.+|++|+++.   ..  ..+..      
T Consensus        84 ~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~---~~--~~~~~------  152 (293)
T 3u3w_A           84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ---LT--GIDVY------  152 (293)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC---CC--CSCTT------
T ss_pred             HHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh---cc--cccHH------
Confidence            346899999999999999984332222      12346788888999999999999999972   22  11111      


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHH
Q 013549          275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA  354 (441)
Q Consensus       275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rA  354 (441)
                         ..+.++++||.+|..+|+|++|+++|++||.+.++. +.++|..+.++.|+|.+|..+|+|++|      ...|++|
T Consensus       153 ---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A------~~~~~~a  222 (293)
T 3u3w_A          153 ---QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEES------LYQVNKA  222 (293)
T ss_dssp             ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHH------HHHHHHH
Confidence               134578999999999999999999999999998875 348899999999999999999999987      8999999


Q ss_pred             HHHhhcCCCCCcchHhhhccHHHHHHHhc-cHHHHHHHh
Q 013549          355 LEFLKAPPLESEGVETKVDRTDIVALARG-GYAEALSVQ  392 (441)
Q Consensus       355 L~i~~~~~~~~~~~~~~l~nl~~~~~~~g-~yaeal~~~  392 (441)
                      +++.+.. .+.+..+..+.++|.++..+| .|++|+..+
T Consensus       223 l~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~  260 (293)
T 3u3w_A          223 IEISCRI-NSMALIGQLYYQRGECLRKLEYEEAEIEDAY  260 (293)
T ss_dssp             HHHHHHT-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHc-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            9998643 345567788889999999999 468777665

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.65  E-value=9.9e-15  Score=141.08  Aligned_cols=191  Identities=10%  Similarity=-0.011  Sum_probs=140.3

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      ..|+....+.+.+..+.    .+|+|++|+.++++++.+...  .++....+..+..+|.++..+|+|++|++.|++++.
T Consensus        70 ~~~~~~~~l~~~~~~~~----~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  143 (293)
T 2qfc_A           70 SDIERKKQFKDQVIMLC----KQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHHHHHH----HhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            34566667777777663    468999999999999997654  234456777888999999999999999999999987


Q ss_pred             hhhhhhhhh--HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          137 FKNSILGVR--VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       137 i~~~~lg~~--~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      +........  ..+++                                              ..|.+|..+|+|++|+.+
T Consensus       144 ~~~~~~~~~~~~~~~~----------------------------------------------~lg~~y~~~~~~~~A~~~  177 (293)
T 2qfc_A          144 QQLTGIDVYQNLYIEN----------------------------------------------AIANIYAENGYLKKGIDL  177 (293)
T ss_dssp             TCCCSSCTTHHHHHHH----------------------------------------------HHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCCchHHHHHHHH----------------------------------------------HHHHHHHHcCCHHHHHHH
Confidence            654321100  11222                                              346666677777777777


Q ss_pred             HHhhhh---ccCCc----hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHH
Q 013549          215 FKGLQE---EEGCT----GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG  287 (441)
Q Consensus       215 ~~~aL~---~~~~~----~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg  287 (441)
                      |++++.   ..+..    ..+..++|.+|..+|+|++|+.+|++|+++.... +  +  ...         ...+++++|
T Consensus       178 ~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~--~--~~~---------~~~~~~~lg  243 (293)
T 2qfc_A          178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-N--S--MAL---------IGQLYYQRG  243 (293)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T--B--CSS---------HHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-C--c--HHH---------HHHHHHHHH
Confidence            777774   11111    1456788999999999999999999999995321 1  1  111         235678999


Q ss_pred             HHHHHcCCHHHH-HHHHHHHHHHHHHh
Q 013549          288 QLEAHMGNFGDA-EEILTRTLTKTEEL  313 (441)
Q Consensus       288 ~ly~~qG~y~eA-e~l~~rAL~i~e~~  313 (441)
                      .+|..+|+|++| +.+|++|+.+++..
T Consensus       244 ~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          244 ECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            999999999999 99999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.63  E-value=2.6e-14  Score=134.95  Aligned_cols=215  Identities=11%  Similarity=-0.004  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--
Q 013549          146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG--  223 (441)
Q Consensus       146 ~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~--  223 (441)
                      ...+..++..+..+|++++|..++++++..    .|..     .....+....|.++..+|+|++|+..|++++...+  
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~-----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~   85 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRTH-----EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID   85 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSCS-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCC-----cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence            346778888999999999999999888632    2211     11122334568888999999999999999999433  


Q ss_pred             -CchHHHHHHHHHHHH--------ccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc----chhHHHHHHHHHHHHHH
Q 013549          224 -CTGSAALSYGEYLHA--------TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM----ALEEVALAATFALGQLE  290 (441)
Q Consensus       224 -~~~~~a~~~a~~~~~--------qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~----~~~~~~~~al~nLg~ly  290 (441)
                       ....+...+|.++..        +|++++|+..|+++++..   ..   . .......    ...........++|.+|
T Consensus        86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~---~-~~~~~a~~~~~~~~~~~~~~~~~la~~~  158 (261)
T 3qky_A           86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PN---H-ELVDDATQKIRELRAKLARKQYEAARLY  158 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TT---C-TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cC---c-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             335566788999999        999999999999999882   11   1 1110000    00000001127899999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh----------hchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK----------AMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q----------G~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      ..+|+|++|+..|++++..+     |++|.....+.++|.+|..+          |++++|      ...|+++++..  
T Consensus       159 ~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A------~~~~~~~~~~~--  225 (261)
T 3qky_A          159 ERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA------VELYERLLQIF--  225 (261)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH------HHHHHHHHHHC--
T ss_pred             HHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH------HHHHHHHHHHC--
Confidence            99999999999999999854     67888999999999999988          666665      88888887763  


Q ss_pred             CCCCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549          361 PPLESEGVETKVDRTDIVALARGGYAEALSV  391 (441)
Q Consensus       361 ~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~  391 (441)
                        |+++.+......++.++...++++++...
T Consensus       226 --p~~~~~~~a~~~l~~~~~~~~~~~~~~~~  254 (261)
T 3qky_A          226 --PDSPLLRTAEELYTRARQRLTELEGDASL  254 (261)
T ss_dssp             --TTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             --CCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence              67787777777788888777777665544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.63  E-value=2.1e-14  Score=128.54  Aligned_cols=189  Identities=20%  Similarity=0.149  Sum_probs=133.7

Q ss_pred             HHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHH
Q 013549          119 YESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVK  198 (441)
Q Consensus       119 ~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~  198 (441)
                      ...|+|++|++.++.... .   ......++.+++.++..+|++++|..++++++.+.......      .....+....
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-H---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH------TAEHRALHQV   72 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-S---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH------HHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC-C---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc------HHHHHHHHHH
Confidence            467888888884443321 1   11223467778888888888888888888888887665421      1112233456


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhc---cC-Cc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549          199 GLVELAHGNLESAESFFKGLQEE---EG-CT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC  271 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~---~~-~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~  271 (441)
                      |.++..+|+|++|+.+|++++..   .+ ..   ..+..++|.++..+|+|++|+.++++++++......          
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------  142 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD----------  142 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc----------
Confidence            88888999999999999999982   22 12   344567899999999999999999999999532211          


Q ss_pred             ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH
Q 013549          272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR  333 (441)
Q Consensus       272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~  333 (441)
                         + .....++.+||.+|..+|++++|..++++|+.+.++.  .+.+..+.++.+++.+..
T Consensus       143 ---~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~  198 (203)
T 3gw4_A          143 ---Q-VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNGLEH  198 (203)
T ss_dssp             ---H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCC
T ss_pred             ---h-HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccchhh
Confidence               1 1133467899999999999999999999999999875  244567777877776543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.63  E-value=2.3e-15  Score=163.95  Aligned_cols=206  Identities=17%  Similarity=0.094  Sum_probs=148.1

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|+|++|+..|++++.......+..+|..+..+.++|.+|..+|+|++|+..|++++++.+...    .++        
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~--------  470 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW----RLV--------  470 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH----HHH--------
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH----HHH--------
Confidence            57899999999999995554555566788888999999999999999999999999876654321    011        


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                                                            ...|.++..+|+|++|+..|++++...+....+..++|.++.
T Consensus       471 --------------------------------------~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~  512 (681)
T 2pzi_A          471 --------------------------------------WYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE  512 (681)
T ss_dssp             --------------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             --------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence                                                  134666778888888888888888866666677788888888


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      .+|+|++ +..|++|+++   .-     .            ...++++||.+|..+|+|++|++.|++|+++        
T Consensus       513 ~~g~~~~-~~~~~~al~~---~P-----~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------  563 (681)
T 2pzi_A          513 LAGNTDE-HKFYQTVWST---ND-----G------------VISAAFGLARARSAEGDRVGAVRTLDEVPPT--------  563 (681)
T ss_dssp             HHTCCCT-TCHHHHHHHH---CT-----T------------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------
T ss_pred             HcCChHH-HHHHHHHHHh---CC-----c------------hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------
Confidence            8899988 8899988887   11     1            1235788899999999998888888888753        


Q ss_pred             CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcc
Q 013549          318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG  367 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~  367 (441)
                      .|.....+.|+|.+|...|+.+++     ++.-+++|++.++...++.|.
T Consensus       564 ~P~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~l~~~~~~~~~  608 (681)
T 2pzi_A          564 SRHFTTARLTSAVTLLSGRSTSEV-----TEEQIRDAARRVEALPPTEPR  608 (681)
T ss_dssp             STTHHHHHHHHHHHTC-------C-----CHHHHHHHHHHHHTSCTTSTT
T ss_pred             CcccHHHHHHHHHHHHccCCCCCC-----CHHHHHHHHHHHhhCCCCcHH
Confidence            477777888888888777765554     256677777777654444444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.62  E-value=2.3e-14  Score=124.87  Aligned_cols=171  Identities=18%  Similarity=0.210  Sum_probs=129.7

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      ....+..+.++|.++..+|+|++|+..+++++...+..    ...+                                  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~----------------------------------   45 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD----VDVA----------------------------------   45 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC----HHHH----------------------------------
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC----hHHH----------------------------------
Confidence            44567889999999999999999999988864433211    0011                                  


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549          184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                                  ...+.++..+|++++|..+|++++...+....+...+|.++..+|++++|..+|++++.+.   ..  
T Consensus        46 ------------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~--  108 (186)
T 3as5_A           46 ------------LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN---PI--  108 (186)
T ss_dssp             ------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT--
T ss_pred             ------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---cH--
Confidence                        1235566678888888888888888655566677788888889999999999999988871   11  


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhh
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSA  343 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~  343 (441)
                                     ....+.++|.+|..+|+|++|+++|++++.+.        |....++.++|.+|..+|++++|  
T Consensus       109 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A--  163 (186)
T 3as5_A          109 ---------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--------PNEGKVHRAIAFSYEQMGRHEEA--  163 (186)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHH--
T ss_pred             ---------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHHHcCCHHHH--
Confidence                           12346788999999999999999999988763        44456778889999999998887  


Q ss_pred             hHHHHHHHHHHHHHh
Q 013549          344 LLIQEGLYRRALEFL  358 (441)
Q Consensus       344 ~~~Ae~ly~rAL~i~  358 (441)
                          ...|++++++.
T Consensus       164 ----~~~~~~~~~~~  174 (186)
T 3as5_A          164 ----LPHFKKANELD  174 (186)
T ss_dssp             ----HHHHHHHHHHH
T ss_pred             ----HHHHHHHHHcC
Confidence                78888888875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.61  E-value=9e-14  Score=135.46  Aligned_cols=222  Identities=14%  Similarity=0.089  Sum_probs=168.8

Q ss_pred             HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-hhhhhhhhhHH
Q 013549           83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLY-------ESGNY-------VEAIEKLQKVEN-FKNSILGVRVA  147 (441)
Q Consensus        83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~-------~qG~y-------~eA~e~~~ral~-i~~~~lg~~~~  147 (441)
                      ++|+.+|++++.+.        |.....+.++|.++.       .+|++       ++|+..|++++. +.+..    ..
T Consensus        33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~  100 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----ML  100 (308)
T ss_dssp             HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HH
T ss_pred             HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc----HH
Confidence            79999999999743        445667888888876       46986       999999999998 55543    23


Q ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchH
Q 013549          148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGS  227 (441)
Q Consensus       148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~  227 (441)
                      .+.+++.++..+|++++|...+++++++    .+..   ..    .+....+.++..+|++++|...|++++...+....
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~---~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  169 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAI----EDID---PT----LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  169 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTS----SSSC---TH----HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc----cccC---cc----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence            6888999999999999999999999753    2211   11    01223456667899999999999999995555545


Q ss_pred             HHHHHHHHHH-HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          228 AALSYGEYLH-ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       228 ~a~~~a~~~~-~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      +...++.+.. .+|++++|..+|+++|++.   -.                 ......++|.++..+|++++|..+|++|
T Consensus       170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~-----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a  229 (308)
T 2ond_A          170 VYVTAALMEYYCSKDKSVAFKIFELGLKKY---GD-----------------IPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TT-----------------CHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5555555433 4799999999999999983   11                 1235689999999999999999999999


Q ss_pred             HHHHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          307 LTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       307 L~i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +...     +-.|+ -.....+++.++...|++++|      ..+++|++++.
T Consensus       230 l~~~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a------~~~~~~a~~~~  271 (308)
T 2ond_A          230 LTSG-----SLPPEKSGEIWARFLAFESNIGDLASI------LKVEKRRFTAF  271 (308)
T ss_dssp             HHSS-----SSCGGGCHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHT
T ss_pred             Hhcc-----CCCHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHc
Confidence            8741     11343 455677888999999999887      88999998886

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.60  E-value=9.8e-14  Score=117.80  Aligned_cols=143  Identities=17%  Similarity=0.167  Sum_probs=118.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 013549          196 AVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG  269 (441)
Q Consensus       196 al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg  269 (441)
                      ...|.++..+|+|++|+.+|++++..   ....   ..+...+|.++..+|+|++|+.+|++++++......        
T Consensus        13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------   84 (164)
T 3ro3_A           13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--------   84 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------
Confidence            34677888999999999999999982   1111   234567899999999999999999999999643211        


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 013549          270 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEG  349 (441)
Q Consensus       270 ~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~  349 (441)
                           + .....++.++|.+|..+|+|++|++++++++.+.++.  .+++..+.++.++|.+|..+|++++|      ..
T Consensus        85 -----~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~  150 (164)
T 3ro3_A           85 -----R-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQA------MH  150 (164)
T ss_dssp             -----H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH------HH
T ss_pred             -----c-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHH------HH
Confidence                 1 1134567899999999999999999999999998875  35688899999999999999999987      89


Q ss_pred             HHHHHHHHhhc
Q 013549          350 LYRRALEFLKA  360 (441)
Q Consensus       350 ly~rAL~i~~~  360 (441)
                      .+++++++.+.
T Consensus       151 ~~~~a~~~~~~  161 (164)
T 3ro3_A          151 FAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.59  E-value=1.7e-13  Score=126.35  Aligned_cols=151  Identities=13%  Similarity=0.101  Sum_probs=127.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccC-CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEG-CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL  275 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~-~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~  275 (441)
                      ..|..+..+|+|++|+.+|++++...+ ....+..++|.++..+|+|++|+..|++|+.+   ..               
T Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p---------------   73 (228)
T 4i17_A           12 NEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NY---------------   73 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TC---------------
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---Cc---------------
Confidence            468888899999999999999999554 55567778999999999999999999999977   11               


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549          276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK----VGVVLTCLALMFRNKAMQEHSSALLIQEGLY  351 (441)
Q Consensus       276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~----va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly  351 (441)
                      .  ...++.++|.+|..+|+|++|+..|++++.+.     |++|.    .+.++.++|.+|..+|++++|      +..|
T Consensus        74 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A------~~~~  140 (228)
T 4i17_A           74 N--LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKA------EENY  140 (228)
T ss_dssp             S--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred             c--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHH------HHHH
Confidence            1  23467899999999999999999999999864     56663    457899999999999999987      8999


Q ss_pred             HHHHHHhhcCCCCCcc--hHhhhccHHHHHHHhccH
Q 013549          352 RRALEFLKAPPLESEG--VETKVDRTDIVALARGGY  385 (441)
Q Consensus       352 ~rAL~i~~~~~~~~~~--~~~~l~nl~~~~~~~g~y  385 (441)
                      ++++++       .|+  ....+.+++.++..+|+.
T Consensus       141 ~~al~~-------~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          141 KHATDV-------TSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHTTS-------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc-------CCCcccHHHHHHHHHHHHHHHHH
Confidence            999775       355  567788999999988876

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=4.2e-13  Score=116.83  Aligned_cols=155  Identities=15%  Similarity=0.113  Sum_probs=128.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..+..+..+|++++|..+|++++...+....+...+|.++..+|++++|..+|++++++   ...               
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~---------------   74 (186)
T 3as5_A           13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APD---------------   74 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---------------
Confidence            35777889999999999999999966666677788899999999999999999999987   111               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                        ...++.++|.+|..+|++++|.++|++++.+        +|.....+.++|.+|..+|++++|      ...|+++++
T Consensus        75 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~  138 (186)
T 3as5_A           75 --NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEA------IDSFKIALG  138 (186)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHH------HHHHHHHHh
Confidence              1235789999999999999999999999987        455557789999999999999987      889999988


Q ss_pred             HhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          357 FLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       357 i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      +.    ++.   .....+++.++..+|+|++|+...
T Consensus       139 ~~----~~~---~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A          139 LR----PNE---GKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HC----TTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cC----ccc---hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            73    222   346668889999999888777664

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.55  E-value=1.6e-14  Score=126.74  Aligned_cols=146  Identities=17%  Similarity=0.158  Sum_probs=113.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      +|.++..+|++++|+..|++++...+..+.+.+.+|.+|..+|+|++|+..|++||++   ..               + 
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p---------------~-   63 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QE---------------R-   63 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---------------T-
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC---------------C-
Confidence            3666778999999999999999966656667788999999999999999999999998   11               1 


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                       ...++.+||.+|..+|+|++|+..|++|+++        .|.-..++.+||.+|..+|++++|     ++.++++|+++
T Consensus        64 -~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a-----a~~~~~~al~l  129 (150)
T 4ga2_A           64 -DPKAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGR-----AKYWVERAAKL  129 (150)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSH-----HHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHH-----HHHHHHHHHHh
Confidence             1246889999999999999999999999987        355556789999999999999886     35667999887


Q ss_pred             hhcCCCCCcchHhhhccHHHHHHHhc
Q 013549          358 LKAPPLESEGVETKVDRTDIVALARG  383 (441)
Q Consensus       358 ~~~~~~~~~~~~~~l~nl~~~~~~~g  383 (441)
                          .|++|.+.   ...+.++..+|
T Consensus       130 ----~P~~~~~~---~l~~~ll~~~G  148 (150)
T 4ga2_A          130 ----FPGSPAVY---KLKEQLLDCEG  148 (150)
T ss_dssp             ----STTCHHHH---HHHHHHHHTCC
T ss_pred             ----CcCCHHHH---HHHHHHHHHhC
Confidence                35666533   33344444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.54  E-value=4.1e-13  Score=113.88  Aligned_cols=143  Identities=17%  Similarity=0.060  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .+...+|.++..+|+|++|+.+|++++++......             + .....++.++|.+|..+|+|++|.++|+++
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------K-AAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-------------c-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34567799999999999999999999999643211             1 123457889999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHH
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA  386 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~ya  386 (441)
                      +.+.++.  .+++..+.++.++|.+|..+|++++|      ...+++++++.+.. .+++.....+.+++.++..+|+|+
T Consensus        76 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~  146 (164)
T 3ro3_A           76 LLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHD  146 (164)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHH
Confidence            9999876  45677789999999999999999987      89999999998653 244556777889999999999998


Q ss_pred             HHHHHh
Q 013549          387 EALSVQ  392 (441)
Q Consensus       387 eal~~~  392 (441)
                      +|+...
T Consensus       147 ~A~~~~  152 (164)
T 3ro3_A          147 QAMHFA  152 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.51  E-value=8.8e-13  Score=136.41  Aligned_cols=136  Identities=13%  Similarity=0.084  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHhhhhccCCchHHHHHHHHH-H--HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          206 GNLESAESFFKGLQEEEGCTGSAALSYGEY-L--HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       206 G~y~eAe~l~~~aL~~~~~~~~~a~~~a~~-~--~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      +++++|..+|+++.   +..+.+..++|.+ +  ...|++++|..+|++|++.     +                 ...+
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g-----------------~~~A  285 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D-----------------QPRA  285 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T-----------------CHHH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C-----------------CHHH
Confidence            35555555555555   2234455555555 3  3456666666666665533     1                 0134


Q ss_pred             HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hhchhhhhhhHHHHHHHHH
Q 013549          283 TFALGQLEAHMG-----NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRR  353 (441)
Q Consensus       283 l~nLg~ly~~qG-----~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG~~eeA~~~~~Ae~ly~r  353 (441)
                      +++||.+|. .|     ++++|..+|++|.        +.||   ..+.+||.+|..    ..++++|      ..+|++
T Consensus       286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~~---~A~~~Lg~~y~~G~g~~~d~~~A------~~~~~~  347 (452)
T 3e4b_A          286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GREV---AADYYLGQIYRRGYLGKVYPQKA------LDHLLT  347 (452)
T ss_dssp             HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTCH---HHHHHHHHHHHTTTTSSCCHHHH------HHHHHH
T ss_pred             HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCCH---HHHHHHHHHHHCCCCCCcCHHHH------HHHHHH
Confidence            566666665 55     6666666666655        2333   456666666655    1244433      556666


Q ss_pred             HHHHhhcCCCCCcchHhhhccHHHHHHH----hccHHHHHHHhh
Q 013549          354 ALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQQ  393 (441)
Q Consensus       354 AL~i~~~~~~~~~~~~~~l~nl~~~~~~----~g~yaeal~~~~  393 (441)
                      |.+      .+++   ....|++.+|..    ..++.+|+.++.
T Consensus       348 Aa~------~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~  382 (452)
T 3e4b_A          348 AAR------NGQN---SADFAIAQLFSQGKGTKPDPLNAYVFSQ  382 (452)
T ss_dssp             HHT------TTCT---THHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred             HHh------hChH---HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            543      2333   244566776653    236666666653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.51  E-value=8.1e-13  Score=128.67  Aligned_cols=190  Identities=11%  Similarity=0.046  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013549           82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ  161 (441)
Q Consensus        82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~  161 (441)
                      +++|+.+|++|+...       +|.-.....++|.++..+|++++|+..|++++.+.+....   .++.+++.++..+|+
T Consensus        80 ~~~A~~~~~rAl~~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~  149 (308)
T 2ond_A           80 SDEAANIYERAISTL-------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEG  149 (308)
T ss_dssp             HHHHHHHHHHHHTTT-------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcC
Confidence            599999999999732       3445678999999999999999999999999987654221   167888999999999


Q ss_pred             cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHH---HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549          162 DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVEL---AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA  238 (441)
Q Consensus       162 ~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~---~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~  238 (441)
                      +++|..++++++.+.    +..+   ..       ..+.+..   .+|++++|..+|++++...+....+..+++.++..
T Consensus       150 ~~~A~~~~~~a~~~~----p~~~---~~-------~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          150 IKSGRMIFKKAREDA----RTRH---HV-------YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHTST----TCCT---HH-------HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcC----CCCH---HH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            999999999886431    2111   11       1122222   37999999999999999766677788999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549          239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e  311 (441)
                      +|++++|..+|++|+..   ..       +.     |+. ......+++.++...|++++|+.++.+++++.-
T Consensus       216 ~g~~~~A~~~~~~al~~---~~-------l~-----p~~-~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          216 LNEDNNTRVLFERVLTS---GS-------LP-----PEK-SGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             TCCHHHHHHHHHHHHHS---SS-------SC-----GGG-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhc---cC-------CC-----HHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            99999999999999985   10       11     110 123457889999999999999999999998764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=1e-12  Score=120.95  Aligned_cols=182  Identities=13%  Similarity=0.081  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                      +..+...|..+..+|+|++|+..|++++.+.+....    ++..+     ...+..                        
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~-----~~~~~~------------------------   50 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE----MYYWT-----NVDKNS------------------------   50 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH----HHHHH-----HSCTTS------------------------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHh-----hhcchh------------------------
Confidence            456788999999999999999999999888765321    11111     111110                        


Q ss_pred             hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549          188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT  267 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~  267 (441)
                       .+........|.++..+|+|++|+..|++++...+....+..++|.++..+|+|++|+..|++++++   .        
T Consensus        51 -~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~--------  118 (208)
T 3urz_A           51 -EISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---E--------  118 (208)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C--------
T ss_pred             -hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C--------
Confidence             0111111235788889999999999999999977778888899999999999999999999999998   1        


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhH
Q 013549          268 LGSCNMALEEVALAATFALGQLEAHMGNFG--DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL  345 (441)
Q Consensus       268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~--eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~  345 (441)
                             |+  ...++++||.+|..+|+.+  +++..|.++       .-+.  .......++|..+..+|+|++|    
T Consensus       119 -------P~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~a~~~~g~~~~~~~~~~~A----  176 (208)
T 3urz_A          119 -------AD--NLAANIFLGNYYYLTAEQEKKKLETDYKKL-------SSPT--KMQYARYRDGLSKLFTTRYEKA----  176 (208)
T ss_dssp             -------TT--CHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCC--HHHHHHHHHHHHHHHHHTHHHH----
T ss_pred             -------CC--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------hCCC--chhHHHHHHHHHHHHccCHHHH----
Confidence                   11  1246889999998877543  444445444       3332  2334567789999999999887    


Q ss_pred             HHHHHHHHHHHHh
Q 013549          346 IQEGLYRRALEFL  358 (441)
Q Consensus       346 ~Ae~ly~rAL~i~  358 (441)
                        +..|++|+++.
T Consensus       177 --~~~~~~al~l~  187 (208)
T 3urz_A          177 --RNSLQKVILRF  187 (208)
T ss_dssp             --HHHHHHHTTTS
T ss_pred             --HHHHHHHHHhC
Confidence              89999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.50  E-value=1.2e-12  Score=126.98  Aligned_cols=167  Identities=17%  Similarity=0.074  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcch
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK  185 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~  185 (441)
                      .-...+..+|..+..+|++++|+..|++++.+.+...    .++.+|+.++                             
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~-----------------------------  161 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETL-----------------------------  161 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHH-----------------------------
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHH-----------------------------
Confidence            4556788999999999999999999999987766532    2334444444                             


Q ss_pred             hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549          186 TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM  265 (441)
Q Consensus       186 ~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~  265 (441)
                                       ..+|++++|+.+|++++...+.........+..+..+|++++|+..|+++++..         
T Consensus       162 -----------------~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~---------  215 (287)
T 3qou_A          162 -----------------IALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN---------  215 (287)
T ss_dssp             -----------------HHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC---------
T ss_pred             -----------------HHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC---------
Confidence                             455555555555555555333222222223333445555555555555555540         


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH--HHHHHHHHHHHHHhhchhhhhh
Q 013549          266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSA  343 (441)
Q Consensus       266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v--a~~l~nLa~ly~~qG~~eeA~~  343 (441)
                               |+  ...+..+||.+|..+|++++|+..|++++.+        +|..  .....+|+.+|..+|+.++|  
T Consensus       216 ---------P~--~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~a--  274 (287)
T 3qou_A          216 ---------PE--DAALATQLALQLHQVGRNEEALELLFGHLRX--------DLTAADGQTRXTFQEILAALGTGDAL--  274 (287)
T ss_dssp             ---------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTGGGGHHHHHHHHHHHHHCTTCHH--
T ss_pred             ---------Cc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------ccccccchHHHHHHHHHHHcCCCCcH--
Confidence                     00  0123455555555555555555555555553        2333  34455555555555555544  


Q ss_pred             hHHHHHHHHHHHH
Q 013549          344 LLIQEGLYRRALE  356 (441)
Q Consensus       344 ~~~Ae~ly~rAL~  356 (441)
                          ...|+|+|.
T Consensus       275 ----~~~~r~al~  283 (287)
T 3qou_A          275 ----ASXYRRQLY  283 (287)
T ss_dssp             ----HHHHHHHHH
T ss_pred             ----HHHHHHHHH
Confidence                455555554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=7.4e-13  Score=121.91  Aligned_cols=155  Identities=16%  Similarity=0.102  Sum_probs=117.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHH----------------HHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALS----------------YGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~----------------~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      .|..+..+|+|++|+.+|++++...+....+...                +|.+|..+|+|++|+..|+++|++   .  
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~--   84 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---A--   84 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C--
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C--
Confidence            4677789999999999999999965555555556                899999999999999999999998   1  


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                   |+  ...++.+||.+|..+|+|++|++.|++++.+        +|+-..++.+||.+|..+|+.+.+
T Consensus        85 -------------p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~  141 (208)
T 3urz_A           85 -------------PN--NVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEKK  141 (208)
T ss_dssp             -------------TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHHH
Confidence                         11  1346889999999999999999999999986        455567899999999988865443


Q ss_pred             hhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          342 SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       342 ~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                          .++..|++++      .+ .|. .....+++.++...|+|++|+...
T Consensus       142 ----~~~~~~~~~~------~~-~~~-~~a~~~~g~~~~~~~~~~~A~~~~  180 (208)
T 3urz_A          142 ----KLETDYKKLS------SP-TKM-QYARYRDGLSKLFTTRYEKARNSL  180 (208)
T ss_dssp             ----HHHHHHC---------CC-CHH-HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ----HHHHHHHHHh------CC-Cch-hHHHHHHHHHHHHccCHHHHHHHH
Confidence                2244444432      11 122 223446788888889999988765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.49  E-value=1.2e-13  Score=121.20  Aligned_cols=147  Identities=9%  Similarity=0.017  Sum_probs=110.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHh
Q 013549          113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNS  192 (441)
Q Consensus       113 nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~  192 (441)
                      +||.++..+|++++|++.+++++...+...                                             .    
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~---------------------------------------------~----   32 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKS---------------------------------------------I----   32 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHH---------------------------------------------T----
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccH---------------------------------------------H----
Confidence            578888888999999888888754433210                                             0    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549          193 RANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN  272 (441)
Q Consensus       193 ~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~  272 (441)
                       .....|.+|..+|+|++|+.+|++++...+....+..++|.+|..+|++++|+..|++|+++   .-            
T Consensus        33 -~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p------------   96 (150)
T 4ga2_A           33 -KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL---NP------------   96 (150)
T ss_dssp             -THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT------------
T ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CC------------
Confidence             00124667788999999999999999977778888899999999999999999999999998   11            


Q ss_pred             cchhHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549          273 MALEEVALAATFALGQLEAHMGNFGDAEEI-LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       273 ~~~~~~~~~al~nLg~ly~~qG~y~eAe~l-~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~  337 (441)
                         +  ...++.+||.+|..+|++++|.+. +++|+.+     -|+||.+   +...+.++..+|+
T Consensus        97 ---~--~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~---~~l~~~ll~~~G~  149 (150)
T 4ga2_A           97 ---T--QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAV---YKLKEQLLDCEGE  149 (150)
T ss_dssp             ---T--CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHH---HHHHHHHHHTCCC
T ss_pred             ---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHH---HHHHHHHHHHhCc
Confidence               1  124678999999999999887665 5899975     4777765   5566788888775

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.47  E-value=1.3e-12  Score=121.44  Aligned_cols=175  Identities=15%  Similarity=0.111  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                      +..+.++|..+..+|+|++|+..|++++...+.. .....++..++.+|..+|++++|...+++++++.-...    .  
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~----~--   76 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP----N--   76 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----T--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC----c--
Confidence            5678999999999999999999999998876543 11234778899999999999999999998875432211    0  


Q ss_pred             hhhHhHHHHHHHHHHH------------------HcCCHHHHHHHHHhhhhccCCchHHH-----------------HHH
Q 013549          188 GAVNSRANAVKGLVEL------------------AHGNLESAESFFKGLQEEEGCTGSAA-----------------LSY  232 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~------------------~qG~y~eAe~l~~~aL~~~~~~~~~a-----------------~~~  232 (441)
                         ...+....|.++.                  .+|++++|...|++++...+....+.                 ..+
T Consensus        77 ---~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~  153 (225)
T 2yhc_A           77 ---IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV  153 (225)
T ss_dssp             ---HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence               0112223444443                  37899999999999999444332111                 356


Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      |.+|..+|+|++|+..|++++++.   .+     .       +  ....++..+|.+|..+|++++|++.+++++..
T Consensus       154 a~~~~~~~~~~~A~~~~~~~l~~~---p~-----~-------~--~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          154 AEYYTERGAWVAVVNRVEGMLRDY---PD-----T-------Q--ATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS---TT-----S-------H--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHC---cC-----C-------C--ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            888999999999999999999982   11     1       1  01246889999999999999999999877653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.44  E-value=2.3e-13  Score=121.57  Aligned_cols=170  Identities=10%  Similarity=-0.029  Sum_probs=128.7

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549          105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY  184 (441)
Q Consensus       105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~  184 (441)
                      |+-...+..+|..+..+|+|++|+..|++++.+.+..    ..++.+++.++..+|++++|...+++++.+.    + .+
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~~   73 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEY----Q-DN   73 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-CH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-Ch
Confidence            3334568899999999999999999999998887654    2478899999999999999988877664221    1 10


Q ss_pred             hhhhhhHhHHHHHHHHH-HHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549          185 KTYGAVNSRANAVKGLV-ELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       185 ~~~~~l~~~a~al~gl~-~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                              ....+.+.+ ...+++..+|+..|++++...+....+..++|.++..+|++++|+..|++++++   ..   
T Consensus        74 --------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p---  139 (176)
T 2r5s_A           74 --------SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV---NL---  139 (176)
T ss_dssp             --------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CT---
T ss_pred             --------HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---Cc---
Confidence                    111122222 223455567899999999977777888899999999999999999999999877   11   


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                        . ..         ...+..+||.+|..+|++++|...|+++|.-
T Consensus       140 --~-~~---------~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          140 --G-AQ---------DGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             --T-TT---------TTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             --c-cC---------hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence              1 00         1135689999999999999999999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.43  E-value=4.7e-13  Score=145.69  Aligned_cols=154  Identities=15%  Similarity=0.065  Sum_probs=123.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|.++..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+..|++|+++   .-.     .         
T Consensus       438 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~-----~---------  500 (681)
T 2pzi_A          438 MEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPG-----E---------  500 (681)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STT-----C---------
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----C---------
Confidence            45777889999999999999999977777788889999999999999999999999998   111     1         


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                         ..++++||.+|..+|+|++ ++.|++|+++        .|.....+.|||.+|..+|++++|      ...|++|++
T Consensus       501 ---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~  562 (681)
T 2pzi_A          501 ---LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAFGLARARSAEGDRVGA------VRTLDEVPP  562 (681)
T ss_dssp             ---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHTSCT
T ss_pred             ---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHHHHHHHHHHcCCHHHH------HHHHHhhcc
Confidence               2357899999999999999 9999999986        455566899999999999999887      777877755


Q ss_pred             HhhcCCCCCcchHhhhccHHHHHHHh--------ccHHHHHHHh
Q 013549          357 FLKAPPLESEGVETKVDRTDIVALAR--------GGYAEALSVQ  392 (441)
Q Consensus       357 i~~~~~~~~~~~~~~l~nl~~~~~~~--------g~yaeal~~~  392 (441)
                      +       .|+......|++.+++..        +++.+|+...
T Consensus       563 l-------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l  599 (681)
T 2pzi_A          563 T-------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV  599 (681)
T ss_dssp             T-------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred             c-------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence            4       244445666788887553        3466666543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.43  E-value=1.8e-12  Score=134.14  Aligned_cols=78  Identities=8%  Similarity=0.014  Sum_probs=26.1

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNY---VEAIEKLQKVENFKNSILGVRVAAMEALAGL  155 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y---~eA~e~~~ral~i~~~~lg~~~~al~~La~l  155 (441)
                      .|++++|+.+|+++....       +   ..++.+||.+|...|++   ++|++.|+++++..       ..+..+|+.+
T Consensus        16 ~g~~~~A~~~~~~aa~~g-------~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~-------~~A~~~Lg~~   78 (452)
T 3e4b_A           16 RGDTVTAQQNYQQLAELG-------Y---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS-------PRAQARLGRL   78 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHT-------C---CTGGGTCC-----------------------------------CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC-------C---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC-------HHHHHHHHHH
Confidence            466666666666665421       1   12345566666666665   56666666665441       1134445553


Q ss_pred             HHhcC-----CcchhHHHHHHHH
Q 013549          156 YLQLG-----QDDTSSVVADKCL  173 (441)
Q Consensus       156 ~~~~G-----~~~~A~~l~~~~L  173 (441)
                      +...|     ++.+|..++++++
T Consensus        79 ~~~~~~~~~~~~~~A~~~~~~Aa  101 (452)
T 3e4b_A           79 LAAKPGATEAEHHEAESLLKKAF  101 (452)
T ss_dssp             HHTC--CCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCcCHHHHHHHHHHHH
Confidence            33333     3445555555543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.41  E-value=9.8e-12  Score=114.99  Aligned_cols=174  Identities=14%  Similarity=0.093  Sum_probs=137.7

Q ss_pred             HHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC---
Q 013549           84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG---  160 (441)
Q Consensus        84 eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G---  160 (441)
                      +|+.+|+++.+.          .-+.++.+||.+|..+|++++|++.|+++.+...      ..++.+|+.+|.. +   
T Consensus         4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~------~~a~~~lg~~y~~-~g~~   66 (212)
T 3rjv_A            4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD------GDALALLAQLKIR-NPQQ   66 (212)
T ss_dssp             CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHTTS-STTS
T ss_pred             hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHc-CCCC
Confidence            788999999863          2356799999999999999999999999976432      2478889999887 6   


Q ss_pred             -CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccC--CchHHHHHHH
Q 013549          161 -QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA----HGNLESAESFFKGLQEEEG--CTGSAALSYG  233 (441)
Q Consensus       161 -~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~----qG~y~eAe~l~~~aL~~~~--~~~~~a~~~a  233 (441)
                       ++.+|..+++++.+   ...           ..+...+|.+|..    .+++++|..+|+++.+..+  ..+.+..++|
T Consensus        67 ~~~~~A~~~~~~A~~---~g~-----------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg  132 (212)
T 3rjv_A           67 ADYPQARQLAEKAVE---AGS-----------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLG  132 (212)
T ss_dssp             CCHHHHHHHHHHHHH---TTC-----------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH---CCC-----------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence             88999999988842   111           1222345677765    8899999999999999554  2467889999


Q ss_pred             HHHHH----ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc-C-----CHHHHHHHH
Q 013549          234 EYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-G-----NFGDAEEIL  303 (441)
Q Consensus       234 ~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q-G-----~y~eAe~l~  303 (441)
                      .+|..    .+++++|+.+|++|++.    .+    +             ..++++||.+|... |     ++++|..+|
T Consensus       133 ~~y~~g~g~~~d~~~A~~~~~~A~~~----~~----~-------------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~  191 (212)
T 3rjv_A          133 LIYASGVHGPEDDVKASEYFKGSSSL----SR----T-------------GYAEYWAGMMFQQGEKGFIEPNKQKALHWL  191 (212)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHT----SC----T-------------THHHHHHHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHc----CC----C-------------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence            99998    88999999999999875    11    0             12578999999865 3     899999999


Q ss_pred             HHHHHH
Q 013549          304 TRTLTK  309 (441)
Q Consensus       304 ~rAL~i  309 (441)
                      ++|.+.
T Consensus       192 ~~A~~~  197 (212)
T 3rjv_A          192 NVSCLE  197 (212)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999876

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.40  E-value=4e-12  Score=108.36  Aligned_cols=103  Identities=12%  Similarity=0.137  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ..++|..+..+|+|++|+..|++||++   .               |+  ...+++|+|.+|..+|+|++|++.|++||.
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~---~---------------p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~   70 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIEL---D---------------PS--NITFYNNKAAVYFEEKKFAECVQFCEKAVE   70 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---C---------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---C---------------CC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            356899999999999999999999998   1               11  134689999999999999999999999999


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +... ....|+.++.++.++|.+|..+|++++|      ...|+++|++.
T Consensus        71 ~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A------~~~~~kal~~~  113 (127)
T 4gcn_A           71 VGRE-TRADYKLIAKAMSRAGNAFQKQNDLSLA------VQWFHRSLSEF  113 (127)
T ss_dssp             HHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred             hCcc-cchhhHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC
Confidence            9765 4557888999999999999999999987      89999998863

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.40  E-value=3.1e-12  Score=124.06  Aligned_cols=167  Identities=11%  Similarity=0.034  Sum_probs=130.2

Q ss_pred             HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh
Q 013549           63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL  142 (441)
Q Consensus        63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l  142 (441)
                      ..+.++|..+.    ..|++++|+..|++++.+.     |++   ...+.+||.+|..+|++++|+..|++++...+...
T Consensus       118 ~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~  185 (287)
T 3qou_A          118 ELXAQQAMQLM----QESNYTDALPLLXDAWQLS-----NQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR  185 (287)
T ss_dssp             HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHT-----TSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred             hhHHHHHHHHH----hCCCHHHHHHHHHHHHHhC-----Ccc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence            34456666653    4689999999999999854     344   56799999999999999999999998754433210


Q ss_pred             hhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Q 013549          143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE  222 (441)
Q Consensus       143 g~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~  222 (441)
                                                                        ......++.+..+|++++|+..|++++...
T Consensus       186 --------------------------------------------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~  215 (287)
T 3qou_A          186 --------------------------------------------------YQGLVAQIELLXQAADTPEIQQLQQQVAEN  215 (287)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred             --------------------------------------------------HHHHHHHHHHHhhcccCccHHHHHHHHhcC
Confidence                                                              000122444557888999999999999977


Q ss_pred             CCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013549          223 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI  302 (441)
Q Consensus       223 ~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l  302 (441)
                      +....+..++|.+|..+|++++|+..|++++.+   ...     .          ....+..+|+.+|..+|+.++|...
T Consensus       216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~-----~----------~~~~a~~~l~~~~~~~g~~~~a~~~  277 (287)
T 3qou_A          216 PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLT-----A----------ADGQTRXTFQEILAALGTGDALASX  277 (287)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----G----------GGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccc-----c----------ccchHHHHHHHHHHHcCCCCcHHHH
Confidence            778888999999999999999999999999998   111     1          0124578999999999999999999


Q ss_pred             HHHHHHH
Q 013549          303 LTRTLTK  309 (441)
Q Consensus       303 ~~rAL~i  309 (441)
                      |+++|..
T Consensus       278 ~r~al~~  284 (287)
T 3qou_A          278 YRRQLYA  284 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.39  E-value=1.4e-11  Score=128.68  Aligned_cols=223  Identities=13%  Similarity=0.107  Sum_probs=168.1

Q ss_pred             HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHH-hhhhhhhhhHH
Q 013549           83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-------SGNYV-------EAIEKLQKVEN-FKNSILGVRVA  147 (441)
Q Consensus        83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-------qG~y~-------eA~e~~~ral~-i~~~~lg~~~~  147 (441)
                      .+++.+|++++...        |.......++|.++..       +|+++       +|+..|++++. +.+..    ..
T Consensus       255 ~~a~~~y~~al~~~--------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~----~~  322 (530)
T 2ooe_A          255 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----ML  322 (530)
T ss_dssp             HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC----HH
T ss_pred             HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc----HH
Confidence            58889999999753        3446778899999886       89998       99999999986 55432    34


Q ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchH
Q 013549          148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGS  227 (441)
Q Consensus       148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~  227 (441)
                      .+.+++.++..+|++++|..++++++++    .+..+   .    ......+..+..+|++++|..+|++++...+....
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~---~----~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~  391 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAI----EDIDP---T----LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  391 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHS----SSSCH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCc----cccCc---h----HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence            6788999999999999999999999753    22110   0    11223345556799999999999999996554433


Q ss_pred             HHHHHHHH-HHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          228 AALSYGEY-LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       228 ~a~~~a~~-~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .....+.+ +..+|++++|..+|+++|++.   ..                 ......+++.++..+|++++|..+|++|
T Consensus       392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~---p~-----------------~~~~~~~~~~~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY---GD-----------------IPEYVLAYIDYLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---TT-----------------CHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHC---CC-----------------CHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence            43444433 346999999999999999882   11                 1234689999999999999999999999


Q ss_pred             HHHHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          307 LTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       307 L~i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      +..     ++..|. ....+..........|+.+++      ..+++|+++...
T Consensus       452 l~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~------~~~~~r~~~~~p  494 (530)
T 2ooe_A          452 LTS-----GSLPPEKSGEIWARFLAFESNIGDLASI------LKVEKRRFTAFR  494 (530)
T ss_dssp             HHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHH------HHHHHHHHHHTH
T ss_pred             Hhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHCc
Confidence            875     566775 344566667788888998876      889999998873

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.39  E-value=2.8e-12  Score=135.36  Aligned_cols=127  Identities=15%  Similarity=0.063  Sum_probs=81.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|.++..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+.+|++++++   ...               
T Consensus        28 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~---------------   89 (568)
T 2vsy_A           28 MLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA---APE---------------   89 (568)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCC---------------
Confidence            34556666777777777777777755555556666677777777777777777777766   110               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh---hchhhhhhhHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK---AMQEHSSALLIQEGLYRR  353 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q---G~~eeA~~~~~Ae~ly~r  353 (441)
                        ...++.+||.+|..+|+|++|+++|++++++        +|.....+.++|.+|..+   |++++|      ...|++
T Consensus        90 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~g~~~~A------~~~~~~  153 (568)
T 2vsy_A           90 --HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQLLNWRRRLCDWRALDVL------SAQVRA  153 (568)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCTTHHHH------HHHHHH
T ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhccccHHHH------HHHHHH
Confidence              0234567777777777777777777777765        334445666777777777   666655      666777


Q ss_pred             HHHH
Q 013549          354 ALEF  357 (441)
Q Consensus       354 AL~i  357 (441)
                      ++++
T Consensus       154 al~~  157 (568)
T 2vsy_A          154 AVAQ  157 (568)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.39  E-value=1.6e-11  Score=113.99  Aligned_cols=183  Identities=10%  Similarity=0.003  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCch
Q 013549          147 AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTG  226 (441)
Q Consensus       147 ~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~  226 (441)
                      ..+.+++..+..+|++++|...+++++...-...         ....+....|.++..+|+|++|+..|++++...+...
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP---------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST---------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            3567788888999999999999998875421111         1112233468888899999999999999999544433


Q ss_pred             ---HHHHHHHHHHHH------------------ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc-h---hHHHHH
Q 013549          227 ---SAALSYGEYLHA------------------TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA-L---EEVALA  281 (441)
Q Consensus       227 ---~~a~~~a~~~~~------------------qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~-~---~~~~~~  281 (441)
                         .+...+|.++..                  +|++++|+..|+++++..   -   +. ..+..... .   ......
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P---~~-~~a~~a~~~l~~~~~~~~~  148 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---P---NS-QYTTDATKRLVFLKDRLAK  148 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---T---TC-TTHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---c---CC-hhHHHHHHHHHHHHHHHHH
Confidence               345556666654                  689999999999998762   1   11 11100000 0   000001


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                      ....+|.+|..+|+|++|...|+++++++     |+.|.....+.++|.+|..+|++++|      ...+++++.
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A------~~~~~~l~~  212 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQA------EKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHH------HHHHHHHHh
Confidence            12578999999999999999999999876     66788889999999999999999987      677776543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.39  E-value=2.7e-12  Score=125.80  Aligned_cols=225  Identities=16%  Similarity=0.087  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHH-------HHHHHHcCChHHHHHHHH
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAM-------STLLYESGNYVEAIEKLQ  132 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nL-------a~l~~~qG~y~eA~e~~~  132 (441)
                      +...+|-..|+.+ +    .+++++|+.+|.+++.        .+|+.+...+++       +.++...+++.+++..++
T Consensus         5 ~~~~~~~~~~~~~-~----~~d~~~A~~~F~~a~~--------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~   71 (282)
T 4f3v_A            5 DRLASLFESAVSM-L----PMSEARSLDLFTEITN--------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS   71 (282)
T ss_dssp             HHHHHHHHHHHHH-T----TTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH
T ss_pred             HHHHHHHHHHhcc-c----CCCHHHHHHHHHHHHH--------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence            4566777777776 2    4789999999999997        467789999999       899999999999999999


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHH
Q 013549          133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAE  212 (441)
Q Consensus       133 ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe  212 (441)
                      +++.+.+..++...    ++.++|   |+..-                +.  ....++    ....+.++..+|+|++|.
T Consensus        72 ~~l~l~p~~l~a~~----~~~g~y---~~~~~----------------~v--~~r~dl----~LayA~~L~~~g~y~eA~  122 (282)
T 4f3v_A           72 GSVQISMSTLNARI----AIGGLY---GDITY----------------PV--TSPLAI----TMGFAACEAAQGNYADAM  122 (282)
T ss_dssp             HTTTCCGGGGCCEE----ECCTTT---CCCEE----------------EC--SSHHHH----HHHHHHHHHHHTCHHHHH
T ss_pred             HHhcCChhhhhhhh----ccCCcc---ccccc----------------cc--CCHhHH----HHHHHHHHHHCCCHHHHH
Confidence            99888877654321    111111   11000                00  000111    011244456899999999


Q ss_pred             HHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549          213 SFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH  292 (441)
Q Consensus       213 ~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~  292 (441)
                      .+|++++...+... +.+.+|.++...|+|++|+.+|++++..   .      +        |. ....+..+||.++..
T Consensus       123 ~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~------d--------~~-~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          123 EALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW---P------D--------KF-LAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC---S------C--------HH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc---C------C--------cc-cHHHHHHHHHHHHHH
Confidence            99999998655455 7788899999999999999999865433   0      0        10 122467899999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          293 MGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +|+|++|+..|++++      -|+.-|. ....+.++|.++..+|+.++|      ..+|++++++
T Consensus       184 LG~~~eAl~~l~~a~------~g~~~P~~~~da~~~~glaL~~lGr~deA------~~~l~~a~a~  237 (282)
T 4f3v_A          184 LALFTEAERRLTEAN------DSPAGEACARAIAWYLAMARRSQGNESAA------VALLEWLQTT  237 (282)
T ss_dssp             TTCHHHHHHHHHHHH------TSTTTTTTHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh------cCCCCccccHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhc
Confidence            999999999999987      3654377 777999999999999999987      8999999886

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.39  E-value=1.6e-13  Score=143.55  Aligned_cols=183  Identities=14%  Similarity=0.047  Sum_probs=140.5

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      ++..+..+.++|..+..+|+|++|++.|++++++.+...    .+                                   
T Consensus         2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~----~~-----------------------------------   42 (477)
T 1wao_1            2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IY-----------------------------------   42 (477)
T ss_dssp             CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH----HH-----------------------------------
T ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH----HH-----------------------------------
Confidence            567778888899999999999999999999876643320    01                                   


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549          184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                                 ....|.++..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+..|++|+++   ...  
T Consensus        43 -----------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~--  106 (477)
T 1wao_1           43 -----------YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV---KPH--  106 (477)
T ss_dssp             -----------HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STT--
T ss_pred             -----------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC--
Confidence                       1134666778999999999999999977777778889999999999999999999999998   111  


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHHHHHhhCCCCch---HHHHHHH
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQL--EAHMGNFGDAEEILT-----------RTLTKTEELFGSHHPK---VGVVLTC  327 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~l--y~~qG~y~eAe~l~~-----------rAL~i~e~~lG~~HP~---va~~l~n  327 (441)
                         .            ..+..+++.+  +..+|+|++|+++++           +++.+.....|+.||.   +...+.+
T Consensus       107 ---~------------~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~  171 (477)
T 1wao_1          107 ---D------------KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKE  171 (477)
T ss_dssp             ---C------------TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHH
T ss_pred             ---C------------HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHH
Confidence               1            1235677777  899999999999999           9999999999999998   4556666


Q ss_pred             HHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          328 LALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       328 La~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      +...+..+++..+.    +...++.++.++++.
T Consensus       172 lie~l~~~~~l~e~----~v~~L~~~a~eil~~  200 (477)
T 1wao_1          172 LMQWYKDQKKLHRK----CAYQILVQVKEVLSK  200 (477)
T ss_dssp             HHHHHHTCCCCCHH----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCHH----HHHHHHHHHHHHHcc
Confidence            66677777776654    457789999999854

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.37  E-value=6.4e-12  Score=132.57  Aligned_cols=158  Identities=13%  Similarity=0.113  Sum_probs=103.8

Q ss_pred             cCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC-------CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH
Q 013549          121 SGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG-------QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR  193 (441)
Q Consensus       121 qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G-------~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~  193 (441)
                      .|++++|++.|++++++.+..           ...+..+|       ++++|..++++++++.    +   ..     ..
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p---~~-----~~   58 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD-----------FVAWLMLADAELGMGDTTAGEMAVQRGLALH----P---GH-----PE   58 (568)
T ss_dssp             -------------------CC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----T---TC-----HH
T ss_pred             CccHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C---CC-----HH
Confidence            589999999999997765432           36676775       4566666666665321    1   11     12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          194 ANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       194 a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                      +....|.++..+|+|++|+.+|++++...+....+..++|.+|..+|++++|+..|++++++   ...            
T Consensus        59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~------------  123 (568)
T 2vsy_A           59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPE------------  123 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC------------
Confidence            23346888889999999999999999976767778899999999999999999999999998   111            


Q ss_pred             chhHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 013549          274 ALEEVALAATFALGQLEAHM---GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLA  329 (441)
Q Consensus       274 ~~~~~~~~al~nLg~ly~~q---G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa  329 (441)
                           ...++.+||.+|..+   |++++|.+.|++++.+     +++..   ..+..|+
T Consensus       124 -----~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~  169 (568)
T 2vsy_A          124 -----EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ-----GVGAV---EPFAFLS  169 (568)
T ss_dssp             -----CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH-----TCCCS---CHHHHTT
T ss_pred             -----CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc-----CCccc---ChHHHhC
Confidence                 124578999999999   9999999999999975     34444   4455555

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.37  E-value=2.3e-11  Score=99.71  Aligned_cols=128  Identities=19%  Similarity=0.285  Sum_probs=106.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..+.++..+|++++|+.+|++++...+....+...++.++..+|++++|+.+|++++.+   ...               
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~---------------   67 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR---------------   67 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC---------------
Confidence            34677788999999999999999965556667778899999999999999999999987   111               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                        ....+.++|.+|..+|+|++|..++++++.+     .   |....++.++|.+|..+|++++|      ...|+++++
T Consensus        68 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~  131 (136)
T 2fo7_A           68 --SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----D---PRSAEAWYNLGNAYYKQGDYDEA------IEYYQKALE  131 (136)
T ss_dssp             --CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHHH
T ss_pred             --chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----C---CCChHHHHHHHHHHHHHccHHHH------HHHHHHHHc
Confidence              1235689999999999999999999999985     2   33456788899999999999987      889999987


Q ss_pred             Hh
Q 013549          357 FL  358 (441)
Q Consensus       357 i~  358 (441)
                      +.
T Consensus       132 ~~  133 (136)
T 2fo7_A          132 LD  133 (136)
T ss_dssp             HS
T ss_pred             cC
Confidence            63

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.36  E-value=1.1e-11  Score=112.31  Aligned_cols=133  Identities=18%  Similarity=0.165  Sum_probs=110.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|..+..+|+|++|...|++++..   ...+..++|.+|..+|+|++|+..|++++.+   ...               
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~---------------   69 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKH---------------   69 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSSSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Ccc---------------
Confidence            3577788999999999999999742   4567788999999999999999999999998   111               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh--------CCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF--------GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE  348 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~l--------G~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae  348 (441)
                        ...+++++|.+|..+|+|++|++.|++++.+....-        ...+|....++.++|.+|..+|++++|      .
T Consensus        70 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~  141 (213)
T 1hh8_A           70 --LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA------E  141 (213)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH------H
T ss_pred             --chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH------H
Confidence              124678999999999999999999999998643210        124567889999999999999999987      8


Q ss_pred             HHHHHHHHHh
Q 013549          349 GLYRRALEFL  358 (441)
Q Consensus       349 ~ly~rAL~i~  358 (441)
                      ..|++++++.
T Consensus       142 ~~~~~al~~~  151 (213)
T 1hh8_A          142 EQLALATSMK  151 (213)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHcC
Confidence            8999998764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.36  E-value=1.4e-11  Score=109.85  Aligned_cols=162  Identities=15%  Similarity=0.078  Sum_probs=121.8

Q ss_pred             HHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHH
Q 013549          149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSA  228 (441)
Q Consensus       149 l~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~  228 (441)
                      +..++..+...|++++|...+++++++.-..            ..+....|.++..+|++++|+..|++++...+ .+..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~   75 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR------------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY   75 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS------------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence            4566778889999999999888776443111            12233567888899999999999999998655 4444


Q ss_pred             HHHHHHHH-HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          229 ALSYGEYL-HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       229 a~~~a~~~-~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      ...++.+. ..+++..+|+..|++++++   .               |+  ...++.+||.+|..+|+|++|+..|++++
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~---~---------------P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l  135 (176)
T 2r5s_A           76 KSLIAKLELHQQAAESPELKRLEQELAA---N---------------PD--NFELACELAVQYNQVGRDEEALELLWNIL  135 (176)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHH---S---------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHh---C---------------CC--CHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            33334332 3445666789999999988   1               11  12467899999999999999999999998


Q ss_pred             HHHHHhhCCCCchH--HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          308 TKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       308 ~i~e~~lG~~HP~v--a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      .+        +|..  ...+.+||.+|..+|+.++|      ...|+++|.-
T Consensus       136 ~~--------~p~~~~~~a~~~l~~~~~~~g~~~~A------~~~y~~al~~  173 (176)
T 2r5s_A          136 KV--------NLGAQDGEVKKTFMDILSALGQGNAI------ASKYRRQLYS  173 (176)
T ss_dssp             TT--------CTTTTTTHHHHHHHHHHHHHCSSCHH------HHHHHHHHHH
T ss_pred             Hh--------CcccChHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHH
Confidence            64        3433  45788999999999999887      8999999864

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.33  E-value=7.4e-10  Score=115.59  Aligned_cols=237  Identities=11%  Similarity=0.015  Sum_probs=152.3

Q ss_pred             ChhhHHHHHHHHHH------hhhccccCCCCC-c---hhHHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhhh
Q 013549           78 SDESYSQGMLVLEQ------CLSTQPSDGQLA-E---SWRGISLLAMSTLLYES----GNY----VEAIEKLQKVENFKN  139 (441)
Q Consensus        78 ~~g~y~eAl~~~eq------aL~i~~~~~g~~-h---~~~a~~l~nLa~l~~~q----G~y----~eA~e~~~ral~i~~  139 (441)
                      ..++|.+|..+|++      ++........++ .   .................    ++.    .+|+..|++++...+
T Consensus       190 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p  269 (530)
T 2ooe_A          190 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG  269 (530)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC
Confidence            45789999988877      443211111111 1   12233333333222221    233    488899999988876


Q ss_pred             hhhhhhHHHHHHHHHHHHh-------cCCcchhHHHHHHHHHHHHhcCC-CcchhhhhhHhHHHHHHHHHHHHcCCHHHH
Q 013549          140 SILGVRVAAMEALAGLYLQ-------LGQDDTSSVVADKCLQLCEKHKP-ENYKTYGAVNSRANAVKGLVELAHGNLESA  211 (441)
Q Consensus       140 ~~lg~~~~al~~La~l~~~-------~G~~~~A~~l~~~~L~i~~~~~~-~~~~~~~~l~~~a~al~gl~~~~qG~y~eA  211 (441)
                      ..    ...+.+++.++.+       +|+++.|..+.+.+..++++... ..+....     .....+.++..+|++++|
T Consensus       270 ~~----~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~-----l~~~~~~~~~~~g~~~~A  340 (530)
T 2ooe_A          270 HH----PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML-----LYFAYADYEESRMKYEKV  340 (530)
T ss_dssp             TC----HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH-----HHHHHHHHHHHTTCHHHH
T ss_pred             CC----HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHHhcCCHHHH
Confidence            54    2467777777765       79987333333333333333321 1111111     112245566789999999


Q ss_pred             HHHHHhhhhccCCch-HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHH-
Q 013549          212 ESFFKGLQEEEGCTG-SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL-  289 (441)
Q Consensus       212 e~l~~~aL~~~~~~~-~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~l-  289 (441)
                      ..+|++++...+... .+...++.++..+|++++|..+|++|++.-        +..       .     ..+...+.+ 
T Consensus       341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--------~~~-------~-----~~~~~~a~~~  400 (530)
T 2ooe_A          341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------RTR-------H-----HVYVTAALME  400 (530)
T ss_dssp             HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--------TCC-------T-----HHHHHHHHHH
T ss_pred             HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--------CCc-------h-----HHHHHHHHHH
Confidence            999999999655443 467888999999999999999999998751        111       0     112233433 


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          290 EAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       290 y~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +..+|++++|..+|+++|.+.     |++|   ..+.+++.++..+|+.++|      ..+|+||+..
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~-----p~~~---~~~~~~~~~~~~~g~~~~A------r~~~~~al~~  454 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKY-----GDIP---EYVLAYIDYLSHLNEDNNT------RVLFERVLTS  454 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHH-----TTCH---HHHHHHHHHHTTTTCHHHH------HHHHHHHHHS
T ss_pred             HHHcCChhHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHhCCCHhhH------HHHHHHHHhc
Confidence            457999999999999999875     4555   5567888999999999887      8999999876

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.33  E-value=3.7e-11  Score=102.32  Aligned_cols=110  Identities=15%  Similarity=0.150  Sum_probs=88.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      +|.++..+|+|++|+.+|++++...+....+..++|.+|..+|+|++|+..|++||++......     .        ..
T Consensus        14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~--------~~   80 (127)
T 4gcn_A           14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA-----D--------YK   80 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----C--------HH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch-----h--------hH
Confidence            5888899999999999999999977777778889999999999999999999999999432111     0        11


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT  326 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~  326 (441)
                      ....++.++|.+|..+|+|++|+++|++||.+.      ..|++...+.
T Consensus        81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~------~~~~~~~~l~  123 (127)
T 4gcn_A           81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF------RDPELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cCHHHHHHHH
Confidence            123468899999999999999999999999752      2366554444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.32  E-value=3e-11  Score=102.96  Aligned_cols=107  Identities=10%  Similarity=0.061  Sum_probs=90.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|..+..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+..|++||++   ..     .          
T Consensus        18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p-----~----------   79 (126)
T 4gco_A           18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DS-----K----------   79 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T----------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hh-----h----------
Confidence            35888899999999999999999977777888899999999999999999999999998   11     1          


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM  331 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l  331 (441)
                        ...++.++|.+|..+|+|++|++.|++||++     -|+++.+   ..+|+.+
T Consensus        80 --~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~a---~~~l~~~  124 (126)
T 4gco_A           80 --FIKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEEA---REGVRNC  124 (126)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHH
T ss_pred             --hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHHH---HHHHHHh
Confidence              1246899999999999999999999999986     4666554   4445443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.32  E-value=1.1e-10  Score=100.48  Aligned_cols=133  Identities=11%  Similarity=-0.013  Sum_probs=108.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|..+..+|+|++|..+|++++...+....+..++|.++..+|+|++|+.+|++++++.   ..               
T Consensus        18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~---------------   79 (166)
T 1a17_A           18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KK---------------   79 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---------------
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc---------------
Confidence            357777899999999999999999666667778889999999999999999999999981   11               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                        ...++.++|.+|..+|+|++|..+|++++.+     .++++.+. ....++..+..+|++++|      ...|.++..
T Consensus        80 --~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~-~~~~~~~~~~~~~~~~~A------~~~~~~~~~  145 (166)
T 1a17_A           80 --YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAK-MKYQECNKIVKQKAFERA------IAGDEHKRS  145 (166)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHH-HHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH-HHHHHHHHHHHHHHHHHH------HHcccchHH
Confidence              1245789999999999999999999999976     45666543 334456668889999887      888999988


Q ss_pred             HhhcC
Q 013549          357 FLKAP  361 (441)
Q Consensus       357 i~~~~  361 (441)
                      +....
T Consensus       146 ~~~~~  150 (166)
T 1a17_A          146 VVDSL  150 (166)
T ss_dssp             HHHHC
T ss_pred             Hhccc
Confidence            87543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.32  E-value=3.7e-12  Score=113.07  Aligned_cols=109  Identities=7%  Similarity=0.037  Sum_probs=63.1

Q ss_pred             HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549          215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG  294 (441)
Q Consensus       215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG  294 (441)
                      |++++...+....+..++|.++..+|+|++|+.+|++++.+   .     +.            ...++.+||.+|..+|
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~-----P~------------~~~~~~~lg~~~~~~g   84 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---D-----FY------------NVDYIMGLAAIYQIKE   84 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-----TT------------CHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C-----CC------------CHHHHHHHHHHHHHHc
Confidence            34444434444455556666666666666666666666665   1     00            0124556666666666


Q ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          295 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       295 ~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +|++|++.|++|+.+.     |++|   ..+.|+|.+|..+|++++|      ...|++|+++
T Consensus        85 ~~~~Ai~~~~~al~l~-----P~~~---~~~~~lg~~~~~lg~~~eA------~~~~~~al~l  133 (151)
T 3gyz_A           85 QFQQAADLYAVAFALG-----KNDY---TPVFHTGQCQLRLKAPLKA------KECFELVIQH  133 (151)
T ss_dssp             CHHHHHHHHHHHHHHS-----SSCC---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhC-----CCCc---HHHHHHHHHHHHcCCHHHH------HHHHHHHHHh
Confidence            6666666666666552     3443   3456666666666666665      6666666665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.30  E-value=4.6e-12  Score=125.95  Aligned_cols=160  Identities=12%  Similarity=0.070  Sum_probs=122.5

Q ss_pred             HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc-ccchhHHHHHH
Q 013549          204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC-NMALEEVALAA  282 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~-~~~~~~~~~~a  282 (441)
                      ..++|++|+..|++++...+....+..++|.++..+|+|++|+..|++|+++.   ..   ...+... ..........+
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~---~~~~~~~~~~~~~~~~~~~  198 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EY---ESSFSNEEAQKAQALRLAS  198 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TT---CCCCCSHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hc---cccCChHHHHHHHHHHHHH
Confidence            35677888888888877555556677888999999999999999999999983   11   0000000 00001112456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP  362 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~  362 (441)
                      ++|||.+|..+|+|++|+.+|++||.+        .|....++.++|.+|..+|++++|      ...|++|+++.    
T Consensus       199 ~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~----  260 (336)
T 1p5q_A          199 HLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELA------RADFQKVLQLY----  260 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHC----
Confidence            889999999999999999999999997        466678899999999999999987      89999999883    


Q ss_pred             CCCcchHhhhccHHHHHHHhccHHHHHH
Q 013549          363 LESEGVETKVDRTDIVALARGGYAEALS  390 (441)
Q Consensus       363 ~~~~~~~~~l~nl~~~~~~~g~yaeal~  390 (441)
                         |+......+++.++..+|++.++..
T Consensus       261 ---P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          261 ---PNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             ---SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence               2333466789999999999988844

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.30  E-value=6.3e-11  Score=117.72  Aligned_cols=129  Identities=18%  Similarity=0.142  Sum_probs=108.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCc---------------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCT---------------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~---------------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      ..|.++..+|+|++|+..|++++...+..               ..+..++|.+|..+|+|++|+..|++||++   ...
T Consensus       152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~  228 (336)
T 1p5q_A          152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL---DSN  228 (336)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence            45778889999999999999999944433               356788999999999999999999999998   111


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                       ...+++++|.+|..+|+|++|+..|++|+.+        .|....++.+|+.+|..+|++++|
T Consensus       229 -----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          229 -----------------NEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                             1346899999999999999999999999987        455567899999999999999987


Q ss_pred             hhhHHHHHHHHHHHHHh
Q 013549          342 SALLIQEGLYRRALEFL  358 (441)
Q Consensus       342 ~~~~~Ae~ly~rAL~i~  358 (441)
                           ...+|++.+..+
T Consensus       284 -----~~~~~~~~~~~~  295 (336)
T 1p5q_A          284 -----EKKLYANMFERL  295 (336)
T ss_dssp             -----HHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHh
Confidence                 256788887765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.29  E-value=3.1e-11  Score=102.86  Aligned_cols=105  Identities=10%  Similarity=0.041  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013549          226 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR  305 (441)
Q Consensus       226 ~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~r  305 (441)
                      ..+..+.|..|..+|+|++|+..|++||++   ..     .            ...++.++|.+|..+|+|++|+..|++
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p-----~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~   72 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DP-----E------------NAILYSNRAACLTKLMEFQRALDDCDT   72 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-----C------------CHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence            345567899999999999999999999998   11     1            124678999999999999999999999


Q ss_pred             HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcch
Q 013549          306 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV  368 (441)
Q Consensus       306 AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~  368 (441)
                      |+.+        .|....++.++|.+|..+|++++|      ...|+++|++    .|+++..
T Consensus        73 al~~--------~p~~~~a~~~lg~~~~~~~~~~~A------~~~~~~al~l----~P~~~~a  117 (126)
T 4gco_A           73 CIRL--------DSKFIKGYIRKAACLVAMREWSKA------QRAYEDALQV----DPSNEEA  117 (126)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH----CTTCHHH
T ss_pred             HHHh--------hhhhhHHHHHHHHHHHHCCCHHHH------HHHHHHHHHH----CcCCHHH
Confidence            9986        455567899999999999999987      8999999988    3455543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.28  E-value=8e-11  Score=108.81  Aligned_cols=177  Identities=15%  Similarity=0.089  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH
Q 013549          125 VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA  204 (441)
Q Consensus       125 ~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~  204 (441)
                      .+|+..|+++.+...      ..++.+|+.+|...+++++|..+++++.+.   ..           ..+...+|.+|..
T Consensus         3 ~eA~~~~~~aa~~g~------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g~-----------~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEAGD------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---GD-----------GDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TC-----------HHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CC-----------HHHHHHHHHHHHc
Confidence            357788888765421      247889999999999999999999998632   11           1223345777665


Q ss_pred             cC----CHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          205 HG----NLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       205 qG----~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                       |    ++++|..+|+++.+..  ++.+..++|.+|..    .+++++|+.+|++|++.     +   ++          
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~---~~----------  121 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----S---ES----------  121 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----T---TS----------
T ss_pred             -CCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----C---CC----------
Confidence             6    8999999999997742  45678889999887    88999999999999875     1   00          


Q ss_pred             HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh-h-----chhhhhhhHH
Q 013549          277 EVALAATFALGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK-A-----MQEHSSALLI  346 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q-G-----~~eeA~~~~~  346 (441)
                      .....++++||.+|..    .+++++|..+|++|+++      +.+|.   ++.+||.+|... |     ++++|     
T Consensus       122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~---a~~~Lg~~y~~g~gg~~~~d~~~A-----  187 (212)
T 3rjv_A          122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRTGY---AEYWAGMMFQQGEKGFIEPNKQKA-----  187 (212)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCTTH---HHHHHHHHHHHCBTTTBCCCHHHH-----
T ss_pred             cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCCHH---HHHHHHHHHHcCCCCCCCCCHHHH-----
Confidence            0013578999999999    99999999999999864      23443   689999999765 3     66665     


Q ss_pred             HHHHHHHHHHH
Q 013549          347 QEGLYRRALEF  357 (441)
Q Consensus       347 Ae~ly~rAL~i  357 (441)
                       ..+|++|++.
T Consensus       188 -~~~~~~A~~~  197 (212)
T 3rjv_A          188 -LHWLNVSCLE  197 (212)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHHc
Confidence             8899999876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.28  E-value=6.7e-10  Score=127.48  Aligned_cols=252  Identities=14%  Similarity=0.072  Sum_probs=160.7

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHH------------------------HHHHHHHHcCChHHHHHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLL------------------------AMSTLLYESGNYVEAIEKLQKV  134 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~------------------------nLa~l~~~qG~y~eA~e~~~ra  134 (441)
                      .|.+.+|+.+||+++ ...+.+ .+|+.....+.                        .+|.++...|.|+||..+|+++
T Consensus       998 aglp~EaieLLEKiv-l~~s~f-s~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A          998 ADLPNELIELLEKIV-LDNSVF-SEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred             CCCHHHHHHHHHHHH-cCCCcc-cccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            578999999999999 333322 35766655532                        1367777788888888888775


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549          135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF  214 (441)
Q Consensus       135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l  214 (441)
                      .        .   ...++..++...+++++|..+++++       ..          .......|.++..+|+|++|+..
T Consensus      1076 ~--------~---~~~A~~VLie~i~nldrAiE~Aerv-------n~----------p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A         1076 D--------V---NTSAVQVLIEHIGNLDRAYEFAERC-------NE----------PAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred             C--------C---HHHHHHHHHHHHhhHHHHHHHHHhc-------CC----------HHHHHHHHHHHHhCCCHHHHHHH
Confidence            2        1   0111222333556665555555544       20          11122457788899999999999


Q ss_pred             HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccc-----cccc-h----hHHHHHHHH
Q 013549          215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS-----CNMA-L----EEVALAATF  284 (441)
Q Consensus       215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~-----~~~~-~----~~~~~~al~  284 (441)
                      |.++     ..+......+..+...|+|++|.++|+.|+....+..   -...+|-     ..+. .    .......+.
T Consensus      1128 YiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~---Idt~LafaYAKl~rleele~fI~~~n~ad~~ 1199 (1630)
T 1xi4_A         1128 YIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY---VETELIFALAKTNRLAELEEFINGPNNAHIQ 1199 (1630)
T ss_pred             HHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc---ccHHHHHHHHhhcCHHHHHHHHhCCCHHHHH
Confidence            9887     2334556678889999999999999999886621000   0000110     0000 0    001123466


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh--hc--
Q 013549          285 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL--KA--  360 (441)
Q Consensus       285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~--~~--  360 (441)
                      ++|..+..+|+|++|..+|.+|                ..+..||.+|..+|++++|      ...|++|....  +.  
T Consensus      1200 ~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~A------IEaarKA~n~~aWkev~ 1257 (1630)
T 1xi4_A         1200 QVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAA------VDGARKANSTRTWKEVC 1257 (1630)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHH------HHHHHHhCCHHHHHHHH
Confidence            8999999999999999999995                4888899999999998887      66666664331  10  


Q ss_pred             --------------CC---CCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549          361 --------------PP---LESEGVETKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       361 --------------~~---~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                                    .+   ..||+   .+..+...|..+|.|+||+...+
T Consensus      1258 ~acve~~Ef~LA~~cgl~Iiv~~d---eLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLHIVVHAD---ELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHhhhcCHH---HHHHHHHHHHHcCCHHHHHHHHH
Confidence                          01   12343   33455667888888888888763

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.28  E-value=8.9e-11  Score=104.08  Aligned_cols=94  Identities=17%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|.++..+|+|++|+.+|++++...+..+.+..++|.+|..+|+|++|+..|++|+++   .     +..         
T Consensus        41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---~-----P~~---------  103 (151)
T 3gyz_A           41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---G-----KND---------  103 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S-----SSC---------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---C-----CCC---------
Confidence            45788889999999999999999988888888999999999999999999999999999   1     111         


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                         ..++.++|.+|..+|+|++|+..|++|+.+.
T Consensus       104 ---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          104 ---YTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             ---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence               1357899999999999999999999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.27  E-value=1.8e-10  Score=94.27  Aligned_cols=131  Identities=21%  Similarity=0.293  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG  188 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~  188 (441)
                      .++.++|.++...|++++|+..+++++...+..    ...+                                       
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~---------------------------------------   38 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAW---------------------------------------   38 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHH---------------------------------------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHH---------------------------------------
Confidence            457788888888899988888888875443211    0011                                       


Q ss_pred             hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549          189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL  268 (441)
Q Consensus       189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~l  268 (441)
                             ...+.++..+|++++|..+|++++...+....+...++.++..+|++++|+.++++++.+.   ..       
T Consensus        39 -------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-------  101 (136)
T 2fo7_A           39 -------YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PR-------  101 (136)
T ss_dssp             -------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TT-------
T ss_pred             -------HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CC-------
Confidence                   1234555678888888888888888555556667778888899999999999999988871   11       


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                                ...++.++|.+|..+|++++|..+|++++.+
T Consensus       102 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A          102 ----------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             ----------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             ----------ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence                      0134678999999999999999999998875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.27  E-value=6.5e-12  Score=131.22  Aligned_cols=135  Identities=11%  Similarity=0.001  Sum_probs=104.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHH
Q 013549          199 GLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV  278 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~  278 (441)
                      |..+..+|+|++|+.+|++++...+....+..++|.+|..+|+|++|+..|++|+++   ...                 
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~-----------------   72 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKK-----------------   72 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTT-----------------
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC-----------------
Confidence            444568999999999999999977777788889999999999999999999999988   111                 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH--HHHhhchhhhhhhHHHHHHHH----
Q 013549          279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM--FRNKAMQEHSSALLIQEGLYR----  352 (441)
Q Consensus       279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l--y~~qG~~eeA~~~~~Ae~ly~----  352 (441)
                      ...+++++|.+|..+|+|++|++.|++|+++        +|.....+.+++.+  |..+|++++|      +.+|+    
T Consensus        73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A------~~~~~~~~~  138 (477)
T 1wao_1           73 YIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERA------IAGDEHKRS  138 (477)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------------CCS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH------hccccccch
Confidence            1346889999999999999999999999987        34444567778888  8899999987      78888    


Q ss_pred             -------HHHHHhhc-CCCCCcc
Q 013549          353 -------RALEFLKA-PPLESEG  367 (441)
Q Consensus       353 -------rAL~i~~~-~~~~~~~  367 (441)
                             +++++... .++.++.
T Consensus       139 ~~~~~~~~al~~~~~~~~~~~~~  161 (477)
T 1wao_1          139 VVDSLDIESMTIEDEYSGPKLED  161 (477)
T ss_dssp             TTTCCTTSSCCCCTTCCSCCCGG
T ss_pred             hHhhhhhhhcccccccccccccc
Confidence                   66666532 3344554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.27  E-value=1.1e-10  Score=105.01  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      ..+.+.|..+...|+|++|+..|++||++-   ..  .++. -+.+..|  ....+++|+|.++..+|+|++|+..|.+|
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---p~--~~~~-~a~~~~~--~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS---HT--MPPE-EAFDHAG--FDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---TT--SCTT-SCCCHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC--Ccch-hhhhhcc--chHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345778999999999999999999999993   11  0000 0111111  12347899999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHH----HHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          307 LTKTEELFGSHHPKVGVVL----TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l----~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      |+++.+. |+-+|+-+..+    +|+|.++..+|++++|      ...|++||++-
T Consensus        84 L~l~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA------l~~y~kAlel~  132 (159)
T 2hr2_A           84 LHYFNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEA------MPEFKKVVEMI  132 (159)
T ss_dssp             HHHHHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred             HHhhhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHH------HHHHHHHHhcC
Confidence            9997765 47788888888    9999999999999997      89999999996

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.27  E-value=2.3e-10  Score=98.53  Aligned_cols=140  Identities=13%  Similarity=-0.000  Sum_probs=107.5

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549          105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY  184 (441)
Q Consensus       105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~  184 (441)
                      ...+..+.++|..+..+|+|++|+..|++++.+.+...    ..+                                   
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~-----------------------------------   50 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYY-----------------------------------   50 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHH-----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHH-----------------------------------
Confidence            45778899999999999999999999998866543210    001                                   


Q ss_pred             hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCC
Q 013549          185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD  264 (441)
Q Consensus       185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~  264 (441)
                                 ...|.++..+|+|++|+.+|++++...+....+...+|.++..+|+|++|..+|++++++.   ..   
T Consensus        51 -----------~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---p~---  113 (166)
T 1a17_A           51 -----------GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK---PH---  113 (166)
T ss_dssp             -----------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT---
T ss_pred             -----------HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC---
Confidence                       1245666789999999999999998666667778888999999999999999999999881   11   


Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                                  ...+.....++..+..+|+|++|.+++.++..++..
T Consensus       114 ------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A          114 ------------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence                        112223356666788999999999999999988865

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.25  E-value=2.2e-11  Score=106.59  Aligned_cols=113  Identities=14%  Similarity=0.015  Sum_probs=87.0

Q ss_pred             HHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549          212 ESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA  291 (441)
Q Consensus       212 e~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~  291 (441)
                      ...|++++...+....+...+|.++..+|+|++|+.+|++++.+   ..     .            ...++.+||.+|.
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p-----~------------~~~~~~~lg~~~~   66 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DH-----Y------------DSRFFLGLGACRQ   66 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T------------CHHHHHHHHHHHH
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---Cc-----c------------cHHHHHHHHHHHH
Confidence            34566777755555566777888888999999999999998887   11     1            1235678999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      .+|+|++|++.|++|+.+     .|++|   ..+.++|.+|..+|++++|      +..|++++++.
T Consensus        67 ~~g~~~~A~~~~~~al~l-----~p~~~---~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~  119 (148)
T 2vgx_A           67 AMGQYDLAIHSYSYGAVM-----DIXEP---RFPFHAAECLLQXGELAEA------ESGLFLAQELI  119 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHH-----STTCT---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhc-----CCCCc---hHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence            999999999999999876     35555   4578889999999998887      88899988875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.25  E-value=6.9e-11  Score=104.54  Aligned_cols=122  Identities=11%  Similarity=0.102  Sum_probs=100.5

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      ..+|+|++|+..|++++...+....+...+|.+|..+|+|++|+.+|++++.+.   ..                 ....
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~-----------------~~~~   80 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GE-----------------NAEL   80 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CS-----------------CHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-----------------CHHH
Confidence            368999999999999999777777788889999999999999999999999982   11                 1235


Q ss_pred             HHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          283 TFALGQL-EAHMGNF--GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       283 l~nLg~l-y~~qG~y--~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +.++|.+ |..+|+|  ++|+.+|++++.+        +|.-...+.++|.+|..+|++++|      ...|++++++.
T Consensus        81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~  145 (177)
T 2e2e_A           81 YAALATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQA------IELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHH------HHHHHHHHhhC
Confidence            7899999 8899999  9999999999986        345556789999999999999987      89999998773

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.22  E-value=3.6e-10  Score=92.48  Aligned_cols=114  Identities=13%  Similarity=0.062  Sum_probs=96.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|..+..+|+|++|..+|++++...+....+...+|.++..+|+|++|+.+|++++.+   ...               
T Consensus        17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~---------------   78 (131)
T 2vyi_A           17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPA---------------   78 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---Ccc---------------
Confidence            45777789999999999999999966666677788999999999999999999999987   111               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhch
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ  338 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~  338 (441)
                        ...++.++|.+|..+|+|++|..+|++++.+        .|.....+.++|.+|..+|++
T Consensus        79 --~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           79 --YSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             --CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence              1235789999999999999999999999987        344456788999999999876

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.22  E-value=2.6e-10  Score=94.20  Aligned_cols=114  Identities=11%  Similarity=0.045  Sum_probs=96.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549          196 AVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL  275 (441)
Q Consensus       196 al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~  275 (441)
                      ...|..+..+|+|++|+.+|++++...+....+...+|.++..+|+|++|+.+|++++++.   ..              
T Consensus        20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~--------------   82 (133)
T 2lni_A           20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PT--------------   82 (133)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TT--------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC--------------
Confidence            3457778899999999999999999666667788889999999999999999999999871   11              


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549          276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~  337 (441)
                         ...++.++|.+|..+|+|++|+.+|++++.+        +|.....+.+++.+|..+|+
T Consensus        83 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           83 ---FIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence               1245789999999999999999999999987        46666788899999988774

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.19  E-value=4.6e-11  Score=108.17  Aligned_cols=161  Identities=8%  Similarity=-0.024  Sum_probs=108.6

Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccc-cccchhHHHH
Q 013549          202 ELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS-CNMALEEVAL  280 (441)
Q Consensus       202 ~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~-~~~~~~~~~~  280 (441)
                      ....|+|++|...++................|..+..+|+|++|+.+|++++.+.   ..  ++..... ..........
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~--~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF---IH--TEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---TT--CTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hc--ccccchhhHHHHHHHHHH
Confidence            3468888888888877665433344556778999999999999999999999973   11  1100000 0000001123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      .++.++|.+|..+|+|++|+.+|++++.+        +|....++.++|.+|..+|++++|      ...|++++++.  
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~--  152 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEA------KENLYKAASLN--  152 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHH------HHHHHHHHHHC--
Confidence            46789999999999999999999999997        466677899999999999999987      89999999883  


Q ss_pred             CCCCCcchHhhhccHHHHHHHhccHHHH
Q 013549          361 PPLESEGVETKVDRTDIVALARGGYAEA  388 (441)
Q Consensus       361 ~~~~~~~~~~~l~nl~~~~~~~g~yaea  388 (441)
                        |+++   ....+++.++...+++.++
T Consensus       153 --p~~~---~~~~~l~~~~~~~~~~~~~  175 (198)
T 2fbn_A          153 --PNNL---DIRNSYELCVNKLKEARKK  175 (198)
T ss_dssp             --TTCH---HHHHHHHHHHHHHHHHHC-
T ss_pred             --CCcH---HHHHHHHHHHHHHHHHHHH
Confidence              3333   3455666666665555433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.18  E-value=9.9e-10  Score=91.63  Aligned_cols=114  Identities=13%  Similarity=0.052  Sum_probs=92.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|..+..+|+|++|+.+|++++...+....+..++|.++..+|+|++|+..|++++++   ...               
T Consensus         9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~---------------   70 (126)
T 3upv_A            9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPN---------------   70 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC---------------
Confidence            35777889999999999999999977767778889999999999999999999999998   111               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly  332 (441)
                        ...++.++|.+|..+|+|++|+..|++++.+.....  +.|.-......|+.+.
T Consensus        71 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           71 --FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKAS  122 (126)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHH
Confidence              124678999999999999999999999999985552  2344444555555554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.17  E-value=2.7e-10  Score=102.97  Aligned_cols=130  Identities=10%  Similarity=0.048  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549          107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT  186 (441)
Q Consensus       107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~  186 (441)
                      -+..+.++|..+..+|+|++|++.|++++..       ...++.+++.+|..+|++++|..++++++.+.    +..   
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~---   70 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD----KHL---   70 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC---
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccc---
Confidence            3556889999999999999999999998422       23478899999999999999999999998653    111   


Q ss_pred             hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----------------chHHHHHHHHHHHHccChHHHHHHHH
Q 013549          187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC----------------TGSAALSYGEYLHATRNFLLAKKFYQ  250 (441)
Q Consensus       187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~----------------~~~~a~~~a~~~~~qG~y~eA~~ly~  250 (441)
                           ..+....|.++..+|+|++|+..|++++...+.                ...+..++|.++..+|++++|...|+
T Consensus        71 -----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  145 (213)
T 1hh8_A           71 -----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  145 (213)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence                 122234688889999999999999999983222                23667889999999999999999999


Q ss_pred             HHHHH
Q 013549          251 KVIEV  255 (441)
Q Consensus       251 rAL~i  255 (441)
                      +++++
T Consensus       146 ~al~~  150 (213)
T 1hh8_A          146 LATSM  150 (213)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            99987

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.16  E-value=5.8e-10  Score=100.83  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=96.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCch----------------HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTG----------------SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~----------------~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      .|..+..+|+|++|+.+|++++...+..+                .+..++|.++..+|+|++|+..|++++.+   ...
T Consensus        44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~  120 (198)
T 2fbn_A           44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI---DKN  120 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---Ccc
Confidence            57778899999999999999998333222                56678899999999999999999999998   111


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                       ...++.++|.+|..+|+|++|+..|++++.+        +|.....+.+++.++..+++++++
T Consensus       121 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~  175 (198)
T 2fbn_A          121 -----------------NVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKK  175 (198)
T ss_dssp             -----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             -----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence                             1246889999999999999999999999987        455567788999999999998876

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.16  E-value=1.1e-09  Score=88.67  Aligned_cols=112  Identities=18%  Similarity=0.257  Sum_probs=92.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..+..+...|+|++|+.+|++++...+....+...++.++..+|+|++|+.+|++++.+   ...               
T Consensus        14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~---------------   75 (125)
T 1na0_A           14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPN---------------   75 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCc---------------
Confidence            35677789999999999999999966656677788999999999999999999999987   111               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA  336 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG  336 (441)
                        ...++.++|.+|..+|++++|..+|++++.+        +|.....+.++|.++..+|
T Consensus        76 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           76 --NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             --cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence              1235789999999999999999999999986        3455567788888887765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.15  E-value=1.1e-09  Score=95.68  Aligned_cols=101  Identities=17%  Similarity=0.150  Sum_probs=86.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|.++..+|+|++|+.+|++++...+....+..++|.++..+|+|++|+..|++|+.+   ...     .         
T Consensus        26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~-----~---------   88 (148)
T 2vgx_A           26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIX-----E---------   88 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STT-----C---------
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCC-----C---------
Confidence            35777889999999999999999977777788889999999999999999999999998   111     1         


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG  322 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va  322 (441)
                         ..++.++|.+|..+|++++|++.|++++.+.     +++|...
T Consensus        89 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~  126 (148)
T 2vgx_A           89 ---PRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFX  126 (148)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGH
T ss_pred             ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcch
Confidence               1357899999999999999999999999876     3566653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.15  E-value=5.5e-11  Score=123.24  Aligned_cols=161  Identities=15%  Similarity=0.047  Sum_probs=120.7

Q ss_pred             HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc-cchhHHHHHH
Q 013549          204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN-MALEEVALAA  282 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~-~~~~~~~~~a  282 (441)
                      ..++|++|+..|++++...+....+..++|.++..+|+|++|+..|++||++..   .   .+.+.... .........+
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p---~---~~~~~~~~~~~~~~~~~~~  319 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE---M---EYGLSEKESKASESFLLAA  319 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT---T---CCSCCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---c---cccCChHHHHHHHHHHHHH
Confidence            456778888888888775544556677889999999999999999999999832   1   11011000 0001112456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP  362 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~  362 (441)
                      ++|+|.+|..+|+|++|+..|++||.+        +|....++.++|.+|..+|+|++|      ...|++|+++.    
T Consensus       320 ~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A------~~~~~~al~l~----  381 (457)
T 1kt0_A          320 FLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESA------KGDFEKVLEVN----  381 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC----
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC----
Confidence            889999999999999999999999997        355677899999999999999987      89999998762    


Q ss_pred             CCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549          363 LESEGVETKVDRTDIVALARGGYAEALSV  391 (441)
Q Consensus       363 ~~~~~~~~~l~nl~~~~~~~g~yaeal~~  391 (441)
                      |+++   ....+++.++...|+|.++...
T Consensus       382 P~~~---~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          382 PQNK---AARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            2333   4667888999999998877653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.14  E-value=3.8e-09  Score=121.30  Aligned_cols=216  Identities=15%  Similarity=0.111  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG  188 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~  188 (441)
                      .++.++|..+..+|+|.||++.|.++         .....+..++..+.++|+++++..+++.+.+...... .      
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-I------ 1169 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-V------ 1169 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-c------
Confidence            34455555555555555555555553         1112334455555555555555555554433220000 0      


Q ss_pred             hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549          189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL  268 (441)
Q Consensus       189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~l  268 (441)
                            ..-.+..|..++++++.+.+.    .  ........++|..+...|+|++|..+|.+|-               
T Consensus      1170 ------dt~LafaYAKl~rleele~fI----~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~--------------- 1222 (1630)
T 1xi4_A         1170 ------ETELIFALAKTNRLAELEEFI----N--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------------- 1222 (1630)
T ss_pred             ------cHHHHHHHHhhcCHHHHHHHH----h--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------------
Confidence                  001233344445555433221    1  1112234567888888899999999988851               


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------HhhCC---CCchHHHHHHHH
Q 013549          269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE-----------------ELFGS---HHPKVGVVLTCL  328 (441)
Q Consensus       269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e-----------------~~lG~---~HP~va~~l~nL  328 (441)
                                   .+..||.+|..+|+|++|.+.+++|....-                 ...|-   .||+   .+..+
T Consensus      1223 -------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~d---eLeel 1286 (1630)
T 1xi4_A         1223 -------------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---ELEEL 1286 (1630)
T ss_pred             -------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHH---HHHHH
Confidence                         146889999999999999999999966532                 01232   2333   45577


Q ss_pred             HHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHH--HhccHHHHHHHhhchh
Q 013549          329 ALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL--ARGGYAEALSVQQNRK  396 (441)
Q Consensus       329 a~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~--~~g~yaeal~~~~~r~  396 (441)
                      +..|..+|.|++|      ..+++++|.+-    +.|....+-+   ++++.  .-++.-|.+..+..|.
T Consensus      1287 i~yYe~~G~feEA------I~LlE~aL~Le----raH~gmftEL---aiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A         1287 INYYQDRGYFEEL------ITMLEAALGLE----RAHMGMFTEL---AILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred             HHHHHHcCCHHHH------HHHHHHHhccC----hhHhHHHHHH---HHHHHhCCHHHHHHHHHHHHHhc
Confidence            8899999999887      78888887552    2344433333   33332  3345555555554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.14  E-value=1.1e-09  Score=94.11  Aligned_cols=103  Identities=15%  Similarity=0.168  Sum_probs=87.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|..+..+|+|++|+.+|++++...+....+...+|.++..+|+|++|+..|++|+.+   ..     ..         
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p-----~~---------   85 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DI-----NE---------   85 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----TC---------
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CC-----CC---------
Confidence            35777789999999999999999977777788889999999999999999999999998   11     11         


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV  324 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~  324 (441)
                         ..++.++|.+|..+|+|++|+..|++++.+.-     ++|.....
T Consensus        86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~  125 (142)
T 2xcb_A           86 ---PRFPFHAAECHLQLGDLDGAESGFYSARALAA-----AQPAHEAL  125 (142)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TCGGGHHH
T ss_pred             ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCcchHHH
Confidence               13578999999999999999999999998864     66665433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.14  E-value=1.6e-09  Score=94.97  Aligned_cols=99  Identities=12%  Similarity=0.043  Sum_probs=86.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|.++..+|+|++|+.+|++++...+....+..++|.+|..+|+|++|+..|++++++   ...               
T Consensus        16 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~---------------   77 (164)
T 3sz7_A           16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPK---------------   77 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC---------------
Confidence            45778889999999999999999977777788889999999999999999999999998   111               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK  320 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~  320 (441)
                        ...++.++|.+|..+|+|++|+..|++++.+.     ++++.
T Consensus        78 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~  114 (164)
T 3sz7_A           78 --YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE-----GNGGS  114 (164)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----SSSCC
T ss_pred             --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCchH
Confidence              12467899999999999999999999999876     66665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.14  E-value=3.1e-10  Score=97.53  Aligned_cols=112  Identities=13%  Similarity=0.040  Sum_probs=90.7

Q ss_pred             HHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549          213 SFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH  292 (441)
Q Consensus       213 ~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~  292 (441)
                      ..|++++...+........+|..+..+|+|++|+.+|++++.+   ..     .            ...++.+||.+|..
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p-----~------------~~~~~~~lg~~~~~   64 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DH-----Y------------DARYFLGLGACRQS   64 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T------------CHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CC-----c------------cHHHHHHHHHHHHH
Confidence            4567777755555667788899999999999999999999987   11     1            12457899999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          293 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +|+|++|+..|++|+.+     .|++|.   .+.++|.+|..+|++++|      ...|++++++.
T Consensus        65 ~g~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~~g~~~~A------~~~~~~al~~~  116 (142)
T 2xcb_A           65 LGLYEQALQSYSYGALM-----DINEPR---FPFHAAECHLQLGDLDGA------ESGFYSARALA  116 (142)
T ss_dssp             TTCHHHHHHHHHHHHHH-----CTTCTH---HHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhc-----CCCCcH---HHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence            99999999999999986     466665   578999999999999987      89999999986

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.13  E-value=3.8e-10  Score=109.03  Aligned_cols=180  Identities=9%  Similarity=0.035  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      ..+..+.++|..+.    ..|+|++|+.+|++++.+.        |.....+.++|.+|..+|+|++|+..|++++.+.+
T Consensus         2 ~~a~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p   69 (281)
T 2c2l_A            2 PSAQELKEQGNRLF----VGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG   69 (281)
T ss_dssp             CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT
T ss_pred             hhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            34567788888873    3689999999999999853        44567899999999999999999999999988865


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHH-----------------HHHHHH
Q 013549          140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANA-----------------VKGLVE  202 (441)
Q Consensus       140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~a-----------------l~gl~~  202 (441)
                      ..    ..++.+++.+|..+|++++|..++++++++.......-.............                 ..-+..
T Consensus        70 ~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  145 (281)
T 2c2l_A           70 QS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR  145 (281)
T ss_dssp             TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred             CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            43    347889999999999999999999999987654321100000000000000                 011222


Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH-ccChHHHHHHHHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA-TRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~-qG~y~eA~~ly~rAL~i  255 (441)
                      +.+|++++|...|++++...+........++.++.. ++++++|..+|+++.+.
T Consensus       146 l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          146 LIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            357999999999999998655444444555555555 48899999999998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.13  E-value=6.6e-10  Score=92.72  Aligned_cols=98  Identities=13%  Similarity=-0.005  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      ......|..+..+|+|++|+.+|++++++   ...                 ...++.++|.+|..+|+|++|+..|+++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APE-----------------DARGYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC-----------------ChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34567788999999999999999999998   111                 1246789999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +.+        .|.....+.++|.+|..+|++++|      ...|++++++.
T Consensus        65 l~~--------~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~  102 (126)
T 3upv_A           65 IEK--------DPNFVRAYIRKATAQIAVKEYASA------LETLDAARTKD  102 (126)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred             HHh--------CCCcHHHHHHHHHHHHHHhCHHHH------HHHHHHHHHhC
Confidence            987        355567899999999999999987      89999999986

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.11  E-value=1.1e-09  Score=90.47  Aligned_cols=118  Identities=13%  Similarity=0.051  Sum_probs=92.9

Q ss_pred             chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT  304 (441)
Q Consensus       225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~  304 (441)
                      ...+...+|.++..+|+|++|+.+|++++++   ...                 ...++.++|.+|..+|+|++|+++|+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~   74 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPK-----------------DAKLYSNRAACYTKLLEFQLALKDCE   74 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTT-----------------CHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-----------------cHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3456678899999999999999999999976   111                 12457899999999999999999999


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhc
Q 013549          305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG  383 (441)
Q Consensus       305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g  383 (441)
                      +++.+        .|.....+.++|.+|..+|++++|      ...|++++++.       |.......+++.++..+|
T Consensus        75 ~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           75 ECIQL--------EPTFIKGYTRKAAALEAMKDYTKA------MDVYQKALDLD-------SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHh--------CCCchHHHHHHHHHHHHHhhHHHH------HHHHHHHHHhC-------CCchHHHHHHHHHHHHhc
Confidence            99986        344556889999999999999987      89999998873       222234455666665554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.10  E-value=8.2e-10  Score=96.77  Aligned_cols=99  Identities=15%  Similarity=0.100  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013549          226 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR  305 (441)
Q Consensus       226 ~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~r  305 (441)
                      ......+|.++..+|+|++|+.+|++++++.   ..                 ...+++++|.+|..+|+|++|+..|++
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~   70 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PA-----------------NPIYLSNRAAAYSASGQHEKAAEDAEL   70 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---Cc-----------------CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3456778999999999999999999999981   11                 124678999999999999999999999


Q ss_pred             HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          306 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       306 AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      ++.+        +|.....+.++|.+|..+|++++|      ...|++++++.
T Consensus        71 al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~  109 (164)
T 3sz7_A           71 ATVV--------DPKYSKAWSRLGLARFDMADYKGA------KEAYEKGIEAE  109 (164)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC
Confidence            9998        355577899999999999999987      89999999985

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.10  E-value=1.3e-09  Score=95.37  Aligned_cols=116  Identities=15%  Similarity=0.149  Sum_probs=93.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhc------------------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549          198 KGLVELAHGNLESAESFFKGLQEE------------------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ  259 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~------------------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~  259 (441)
                      .|..+..+|+|++|+..|++++..                  .+....+..++|.+|..+|+|++|+..+++||++   .
T Consensus        17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~   93 (162)
T 3rkv_A           17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR---E   93 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---S
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---C
Confidence            577788999999999999999983                  3333456678899999999999999999999998   1


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH-HHHHHHHHHHHHhhch
Q 013549          260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQ  338 (441)
Q Consensus       260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va-~~l~nLa~ly~~qG~~  338 (441)
                      .     .            ...++.++|.+|..+|+|++|...|++|+.+        .|.-. .....|+.+.....++
T Consensus        94 p-----~------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           94 E-----T------------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             T-----T------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred             C-----c------------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHH
Confidence            1     1            1346899999999999999999999999998        35444 5566677777776666


Q ss_pred             hhh
Q 013549          339 EHS  341 (441)
Q Consensus       339 eeA  341 (441)
                      .+.
T Consensus       149 ~~~  151 (162)
T 3rkv_A          149 KAD  151 (162)
T ss_dssp             TTS
T ss_pred             HHH
Confidence            553

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.10  E-value=2.5e-09  Score=103.24  Aligned_cols=198  Identities=14%  Similarity=0.047  Sum_probs=115.9

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcch
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK  185 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~  185 (441)
                      ..+..+.++|..+..+|+|++|+..|++++.+.+..    ...+.+++.+|..+|++++|...+++++.+    .+.   
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~---   70 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALEL----DGQ---   70 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTT---
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCC---
Confidence            346789999999999999999999999998876543    235677777777788877777777766532    111   


Q ss_pred             hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549          186 TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM  265 (441)
Q Consensus       186 ~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~  265 (441)
                      .     ..+....|.++..+|+|++|+..|++++...+...........   ...+..++..+.+...     ...    
T Consensus        71 ~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~----  133 (281)
T 2c2l_A           71 S-----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP---SALRIAKKKRWNSIEE-----RRI----  133 (281)
T ss_dssp             C-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH---HHHHHHHHHHHHHHHH-----TCC----
T ss_pred             C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH---HHHHHHHHHHHHHHHH-----HHH----
Confidence            1     1122345667777788888888887777722211100000100   1112222222222110     111    


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh-hchhhhhhh
Q 013549          266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK-AMQEHSSAL  344 (441)
Q Consensus       266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q-G~~eeA~~~  344 (441)
                         .      .+..+  ...|+.++  +|++++|.+.|++|+..        .|.-......++.++... +++++|   
T Consensus       134 ---~------~~~~i--~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a---  189 (281)
T 2c2l_A          134 ---H------QESEL--HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADM---  189 (281)
T ss_dssp             ---C------CCCHH--HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHH---
T ss_pred             ---h------hhHHH--HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHH---
Confidence               0      00011  23445554  68888888888887763        344445555556666665 666665   


Q ss_pred             HHHHHHHHHHHHHh
Q 013549          345 LIQEGLYRRALEFL  358 (441)
Q Consensus       345 ~~Ae~ly~rAL~i~  358 (441)
                         +.+|+++.+..
T Consensus       190 ---~~~f~~a~~~~  200 (281)
T 2c2l_A          190 ---DELFSQVDEKR  200 (281)
T ss_dssp             ---HHHHHHSSCTT
T ss_pred             ---HHHHHhhhccc
Confidence               88888887643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.09  E-value=9.1e-10  Score=114.07  Aligned_cols=129  Identities=13%  Similarity=0.153  Sum_probs=101.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCc---------------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCT---------------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~---------------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      ..|..+..+|+|++|+..|++++...+..               ..+..++|.+|..+|+|++|+..|++||++   ...
T Consensus       273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~  349 (457)
T 1kt0_A          273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL---DSA  349 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCc
Confidence            35778889999999999999999943333               356678999999999999999999999998   111


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                       ...+++++|.+|..+|+|++|+..|++||.+        .|.-..++.+|+.+|..+|++++|
T Consensus       350 -----------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          350 -----------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                             1356899999999999999999999999986        466667899999999999999887


Q ss_pred             hhhHHHHHHHHHHHHHh
Q 013549          342 SALLIQEGLYRRALEFL  358 (441)
Q Consensus       342 ~~~~~Ae~ly~rAL~i~  358 (441)
                           ...+|++.+.-.
T Consensus       405 -----~~~~~~~~f~k~  416 (457)
T 1kt0_A          405 -----DRRIYANMFKKF  416 (457)
T ss_dssp             -----HHHHHHHC----
T ss_pred             -----HHHHHHHHHhhh
Confidence                 245666655443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.09  E-value=5.6e-09  Score=87.44  Aligned_cols=110  Identities=14%  Similarity=0.088  Sum_probs=90.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|..+..+|+|++|+.+|++++...+....+..++|.++..+|+|++|+..|++++.+   ...               
T Consensus        14 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~---------------   75 (137)
T 3q49_B           14 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQ---------------   75 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---Cch---------------
Confidence            45777889999999999999999976667778889999999999999999999999998   111               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT  326 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~  326 (441)
                        ...++.++|.+|..+|+|++|+..|++++.+.........+.+...+.
T Consensus        76 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~  123 (137)
T 3q49_B           76 --SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  123 (137)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence              124678999999999999999999999999987744333454444333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.08  E-value=4e-09  Score=87.41  Aligned_cols=113  Identities=21%  Similarity=0.218  Sum_probs=91.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCch---HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTG---SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~---~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                      .|..+..+|+|++|..+|++++...+...   .+...+|.++..+|+|++|+..|++++.+.   ..   .+.       
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~---~~~-------   74 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PT---HDK-------   74 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---STT-------
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CC---Ccc-------
Confidence            46777899999999999999999544444   577888999999999999999999999871   11   100       


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549          275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly  332 (441)
                          ...++.++|.+|..+|++++|...|++++..+     |++|.+......|..+-
T Consensus        75 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~l~  123 (129)
T 2xev_A           75 ----AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQSIR  123 (129)
T ss_dssp             ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHC
T ss_pred             ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHH
Confidence                13467899999999999999999999999864     78888777777666553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.07  E-value=2.9e-09  Score=86.93  Aligned_cols=118  Identities=19%  Similarity=0.213  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .+...+|.++..+|+|++|+.+|++++.+   ...                 ...++.++|.+|..+|+|++|+++|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~   72 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPA-----------------NAVYFCNRAAAYSKLGNYAGAVQDCERA   72 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCC-----------------CHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            44567788999999999999999999987   111                 1235789999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccH
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGY  385 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~y  385 (441)
                      +.+        +|.....+.++|.+|..+|++++|      ...|++++++.    |+.+   ....+++.++...|+|
T Consensus        73 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~~~~~~----p~~~---~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           73 ICI--------DPAYSKAYGRMGLALSSLNKHVEA------VAYYKKALELD----PDNE---TYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----TTCH---HHHHHHHHHHHHHTTC
T ss_pred             Hhc--------CccCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHhcC----ccch---HHHHHHHHHHHHHhcC
Confidence            986        344466889999999999999987      88999998873    2222   3455677777776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.07  E-value=2.5e-09  Score=93.49  Aligned_cols=114  Identities=15%  Similarity=0.065  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      .....|..+..+|+|++|+..|++||.+........++...  .....+.....+++|+|.+|..+|+|++|+..+++||
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP--EWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH--HHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH--HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            44567899999999999999999999996433220000000  0000011234568899999999999999999999999


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      .+        .|.....+.++|.+|..+|++++|      ...|++++++
T Consensus        91 ~~--------~p~~~~a~~~~g~~~~~~g~~~~A------~~~~~~al~l  126 (162)
T 3rkv_A           91 KR--------EETNEKALFRRAKARIAAWKLDEA------EEDLKLLLRN  126 (162)
T ss_dssp             HH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred             hc--------CCcchHHHHHHHHHHHHHhcHHHH------HHHHHHHHhc
Confidence            98        466677899999999999999987      8999999998

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.06  E-value=1e-08  Score=83.83  Aligned_cols=119  Identities=13%  Similarity=0.111  Sum_probs=91.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|..+..+|+|++|+.+|++++...+....+..++|.++..+|+|++|..+|++++.+......     .        .
T Consensus         9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~--------~   75 (131)
T 1elr_A            9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-----D--------Y   75 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-----C--------H
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-----h--------H
Confidence            35777789999999999999999966666777788999999999999999999999998422110     0        0


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~  337 (441)
                      .....++.++|.+|..+|+|++|.++|++++.+     .+ +|   .....++.++...++
T Consensus        76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~-~~---~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE-----HR-TP---DVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CC-CH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CC-CH---HHHHHHHHHHHHHHH
Confidence            012346789999999999999999999999985     23 34   445555666655443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.05  E-value=4.1e-09  Score=87.36  Aligned_cols=103  Identities=15%  Similarity=0.108  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      +....|..+..+|+|++|+.+|++++...   ..    +..          ...++.++|.+|..+|+|++|++.|++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~----~~~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~   66 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELY---PN----GVY----------TPNALYWLGESYYATRNFQLAEAQFRDLV   66 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SS----STT----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CC----Ccc----------cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34667888999999999999999999871   11    111          12467899999999999999999999999


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      .+     .|++|.+..++.++|.+|..+|++++|      ...|+++++..
T Consensus        67 ~~-----~p~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~~~~~~  106 (129)
T 2xev_A           67 SR-----YPTHDKAAGGLLKLGLSQYGEGKNTEA------QQTLQQVATQY  106 (129)
T ss_dssp             HH-----CTTSTTHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred             HH-----CCCCcccHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence            85     578888899999999999999999987      88999998864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.05  E-value=3e-09  Score=87.06  Aligned_cols=104  Identities=12%  Similarity=0.162  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .....+|.++..+|+|++|+.+|++++.+   ...                 ...++.++|.+|..+|+|++|.++|+++
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKEL---DPT-----------------NMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCc-----------------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            44567889999999999999999999987   111                 1245789999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +.+... .+.+++....++.++|.+|..+|++++|      ...|++++++
T Consensus        65 ~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~  108 (131)
T 1elr_A           65 IEVGRE-NREDYRQIAKAYARIGNSYFKEEKYKDA------IHFYNKSLAE  108 (131)
T ss_dssp             HHHHHH-STTCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred             Hhhccc-cchhHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHh
Confidence            998864 3566777789999999999999999987      8899999886

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.05  E-value=6.1e-09  Score=87.23  Aligned_cols=101  Identities=14%  Similarity=0.004  Sum_probs=86.5

Q ss_pred             chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT  304 (441)
Q Consensus       225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~  304 (441)
                      .......+|.++..+|+|++|+.+|++++.+   ...                 ...++.++|.+|..+|+|++|+..|+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~   67 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPL-----------------VAVYYTNRALCYLKMQQPEQALADCR   67 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcC-----------------cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3456678899999999999999999999998   111                 12467899999999999999999999


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      +++.+        +|.....+.++|.+|..+|++++|      ...|++++++..
T Consensus        68 ~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~p  108 (137)
T 3q49_B           68 RALEL--------DGQSVKAHFFLGQCQLEMESYDEA------IANLQRAYSLAK  108 (137)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred             HHHHh--------CchhHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHCh
Confidence            99987        355567899999999999999987      899999999974

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.05  E-value=5.7e-09  Score=84.47  Aligned_cols=115  Identities=17%  Similarity=0.240  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .+...+|.++...|+|++|+.+|++++.+   ...                 ...++.++|.+|..+|+|++|+.+|+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~   69 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPN-----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcC-----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45567888999999999999999999987   111                 1235789999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHh
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR  382 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~  382 (441)
                      +.+        +|....++.++|.+|..+|++++|      ...|++++++.    |+++   ....+++.++..+
T Consensus        70 ~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~  124 (125)
T 1na0_A           70 LEL--------DPNNAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD----PNNA---EAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCH---HHHHHHHHHHHHH
T ss_pred             HHh--------CCccHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC----CCcH---HHHHHHHHHHHhc
Confidence            976        344456788999999999999987      88999998773    3333   3344555555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.02  E-value=2.6e-10  Score=118.07  Aligned_cols=232  Identities=15%  Similarity=0.118  Sum_probs=73.7

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      ..|+.++|..+++++          +||.   +...||..+..+|++.+|++.|.++-         ....+...+..+.
T Consensus        15 ~~~~ld~A~~fae~~----------~~~~---vWs~La~A~l~~g~~~eAIdsfika~---------D~~~y~~V~~~ae   72 (449)
T 1b89_A           15 HIGNLDRAYEFAERC----------NEPA---VWSQLAKAQLQKGMVKEAIDSYIKAD---------DPSSYMEVVQAAN   72 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC----------CChH---HHHHHHHHHHHcCCHHHHHHHHHcCC---------CHHHHHHHHHHHH
Confidence            356788999988887          3553   88899999999999999999998852         1124555666677


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                      .+|++++|..+++.+.+......         +    ..-.+..|...|++++++.+|+.      ....+..++|..+.
T Consensus        73 ~~g~~EeAi~yl~~ark~~~~~~---------i----~~~Li~~Y~Klg~l~e~e~f~~~------pn~~a~~~IGd~~~  133 (449)
T 1b89_A           73 TSGNWEELVKYLQMARKKARESY---------V----ETELIFALAKTNRLAELEEFING------PNNAHIQQVGDRCY  133 (449)
T ss_dssp             -------------------------------------------------CHHHHTTTTTC------C-------------
T ss_pred             hCCCHHHHHHHHHHHHHhCccch---------h----HHHHHHHHHHhCCHHHHHHHHcC------CcHHHHHHHHHHHH
Confidence            88999999998887764321100         0    00123334467777777766643      12234456677777


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh--
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT--EEL--  313 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~--e~~--  313 (441)
                      .+|+|++|..+|.++        .     .               ...||.++..+|+|++|.+.|++|..+.  .++  
T Consensus       134 ~~g~yeeA~~~Y~~a--------~-----n---------------~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~  185 (449)
T 1b89_A          134 DEKMYDAAKLLYNNV--------S-----N---------------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF  185 (449)
T ss_dssp             ---CTTTHHHHHHHT--------T-----C---------------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHh--------h-----h---------------HHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHH
Confidence            777777777777754        0     0               3567777777777777777777774431  110  


Q ss_pred             -----------------hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHH
Q 013549          314 -----------------FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTD  376 (441)
Q Consensus       314 -----------------lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~  376 (441)
                                       +. .||+-..   .+..+|..+|++++|      ..+++++|.+-    +.|-...+-   ++
T Consensus       186 aCv~~~ef~lA~~~~l~L~-~~ad~l~---~lv~~Yek~G~~eEa------i~lLe~aL~le----~ah~~~fte---l~  248 (449)
T 1b89_A          186 ACVDGKEFRLAQMCGLHIV-VHADELE---ELINYYQDRGYFEEL------ITMLEAALGLE----RAHMGMFTE---LA  248 (449)
T ss_dssp             HHHHTTCHHHHHHTTTTTT-TCHHHHH---HHHHHHHHTTCHHHH------HHHHHHHTTST----TCCHHHHHH---HH
T ss_pred             HHHHcCcHHHHHHHHHHHH-hCHhhHH---HHHHHHHHCCCHHHH------HHHHHHHhCCc----HHHHHHHHH---HH
Confidence                             12 5666543   466889999998886      67788776442    334443333   34


Q ss_pred             HHHH--HhccHHHHHHHhhch
Q 013549          377 IVAL--ARGGYAEALSVQQNR  395 (441)
Q Consensus       377 ~~~~--~~g~yaeal~~~~~r  395 (441)
                      ++|.  .-++.-|.+..+..|
T Consensus       249 il~~ky~p~k~~ehl~~~~~~  269 (449)
T 1b89_A          249 ILYSKFKPQKMREHLELFWSR  269 (449)
T ss_dssp             HHHHTTCHHHHHHHHHHHSTT
T ss_pred             HHHHhcCHHHHHHHHHHHHHH
Confidence            5543  445566666665444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.01  E-value=6e-09  Score=91.89  Aligned_cols=133  Identities=11%  Similarity=0.121  Sum_probs=97.0

Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHH-HH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEY-LH  237 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~-~~  237 (441)
                      .|++++|..++++++...    +..        .......|.++..+|+|++|+.+|++++...+....+...+|.+ +.
T Consensus        23 ~~~~~~A~~~~~~al~~~----p~~--------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~   90 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRAN----PQN--------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY   90 (177)
T ss_dssp             ----CCCCHHHHHHHHHC----CSC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC----CCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            466666666666665331    110        11223467888899999999999999999666667778889998 78


Q ss_pred             HccCh--HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549          238 ATRNF--LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG  315 (441)
Q Consensus       238 ~qG~y--~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG  315 (441)
                      .+|++  ++|+.+|++++++   ...                 ...++.++|.+|..+|+|++|+.+|++++.+     .
T Consensus        91 ~~~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~  145 (177)
T 2e2e_A           91 QASQHMTAQTRAMIDKALAL---DSN-----------------EITALMLLASDAFMQANYAQAIELWQKVMDL-----N  145 (177)
T ss_dssp             HTTTCCCHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----C
T ss_pred             hcCCcchHHHHHHHHHHHHh---CCC-----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----C
Confidence            99999  9999999999988   111                 1245789999999999999999999999975     4


Q ss_pred             CCCchHHHHHHHH
Q 013549          316 SHHPKVGVVLTCL  328 (441)
Q Consensus       316 ~~HP~va~~l~nL  328 (441)
                      ++++.....+..+
T Consensus       146 p~~~~~~~~~~~i  158 (177)
T 2e2e_A          146 SPRINRTQLVESI  158 (177)
T ss_dssp             CTTSCHHHHHHHH
T ss_pred             CCCccHHHHHHHH
Confidence            5666655544433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.01  E-value=1.4e-09  Score=91.66  Aligned_cols=93  Identities=22%  Similarity=0.082  Sum_probs=80.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|..+..+|++++|+..|++++...+....+...+|.++..+|++++|+..|++|+++   .               |+ 
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~---------------P~-   83 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---D---------------PK-   83 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C---------------TT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C---------------CC-
Confidence            5777889999999999999999977778888899999999999999999999999998   1               11 


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                       ...++.+||.+|..+|++++|+..|++++.+.
T Consensus        84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           84 -DIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             12467899999999999999999999999763

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.00  E-value=8.1e-09  Score=82.86  Aligned_cols=107  Identities=14%  Similarity=0.093  Sum_probs=86.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|..+..+|+|++|..+|++++...+....+...+|.++..+|+|++|...|++++++.   ..                
T Consensus        10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~----------------   70 (118)
T 1elw_A           10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PD----------------   70 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT----------------
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cc----------------
Confidence            46677899999999999999999666667778889999999999999999999999881   11                


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly  332 (441)
                       ...++.++|.+|..+|+|++|..+|++++.+     .+++|.   ...+++.+.
T Consensus        71 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~---~~~~l~~~~  116 (118)
T 1elw_A           71 -WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQ---LKEGLQNME  116 (118)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHH---HHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHhh
Confidence             1235789999999999999999999999874     455554   444454443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.00  E-value=6e-09  Score=93.65  Aligned_cols=114  Identities=20%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh-------hh-hhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS-------IL-GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCE  177 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~-------~l-g~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~  177 (441)
                      ..+..+.++|..+...|+|++|++.|.+++.+.+.       .. +.+...+.|++.++..+|+|++|...++++++++.
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            36778999999999999999999999999999987       22 12344899999999999999999999998887755


Q ss_pred             hcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHH----HHHHHHHHHccChHHHHHHHHHHH
Q 013549          178 KHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAA----LSYGEYLHATRNFLLAKKFYQKVI  253 (441)
Q Consensus       178 ~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a----~~~a~~~~~qG~y~eA~~ly~rAL  253 (441)
                      +.....                                       +....+.    ++.|.++..+|+|+||+..|++||
T Consensus        89 ~~~e~~---------------------------------------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           89 RRGELN---------------------------------------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHCCTT---------------------------------------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccCC---------------------------------------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            554322                                       2222333    667777777788888888888888


Q ss_pred             HHHHh
Q 013549          254 EVLAE  258 (441)
Q Consensus       254 ~i~~~  258 (441)
                      ++--+
T Consensus       130 el~p~  134 (159)
T 2hr2_A          130 EMIEE  134 (159)
T ss_dssp             HHHHH
T ss_pred             hcCCC
Confidence            77433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.99  E-value=1.5e-09  Score=90.10  Aligned_cols=93  Identities=12%  Similarity=0.178  Sum_probs=74.6

Q ss_pred             HcCCHHHHHHHHHhhhhc---cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHH
Q 013549          204 AHGNLESAESFFKGLQEE---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL  280 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~  280 (441)
                      .+|+|++|+.+|++++..   .+....+..++|.+|..+|+|++|+..|++++++.   .               +  ..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p---------------~--~~   61 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---P---------------N--HQ   61 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T---------------T--CH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C---------------C--ch
Confidence            479999999999999995   45566777889999999999999999999999981   1               1  12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH
Q 013549          281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV  321 (441)
Q Consensus       281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v  321 (441)
                      .++.++|.+|..+|+|++|+++|++++.+.     +++|.+
T Consensus        62 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~   97 (117)
T 3k9i_A           62 ALRVFYAMVLYNLGRYEQGVELLLKIIAET-----SDDETI   97 (117)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHH
Confidence            467899999999999999999999999864     666654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.98  E-value=4e-09  Score=88.88  Aligned_cols=95  Identities=19%  Similarity=0.066  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ...+|..+..+|+|++|+..|++++++   .-               +  ...++.+||.+|..+|++++|+..|++|+.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P---------------~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   79 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK---EP---------------E--REEAWRSLGLTQAENEKDGLAIIALNHARM   79 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---ST---------------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH---CC---------------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            466788899999999999999999998   11               1  124678999999999999999999999998


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +     .|++|   ..+.+||.+|..+|++++|      ...|++++++
T Consensus        80 l-----~P~~~---~~~~~la~~~~~~g~~~~A------~~~~~~al~~  114 (121)
T 1hxi_A           80 L-----DPKDI---AVHAALAVSHTNEHNANAA------LASLRAWLLS  114 (121)
T ss_dssp             H-----CTTCH---HHHHHHHHHHHHHHHHHHH------HHHHHHHHC-
T ss_pred             h-----CCCCH---HHHHHHHHHHHHcCCHHHH------HHHHHHHHHh
Confidence            6     34454   5789999999999999987      8899999875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.97  E-value=1.9e-08  Score=98.48  Aligned_cols=236  Identities=11%  Similarity=0.064  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-------HHHHhcCCcchhHHHHHHHHHHHHhc
Q 013549          107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALA-------GLYLQLGQDDTSSVVADKCLQLCEKH  179 (441)
Q Consensus       107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La-------~l~~~~G~~~~A~~l~~~~L~i~~~~  179 (441)
                      ....+...|.-+ .-+++.+|++.|.+++.+.+...    .+|.+++       .++..++++.++...+++.+.+.-..
T Consensus         6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~----Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~   80 (282)
T 4f3v_A            6 RLASLFESAVSM-LPMSEARSLDLFTEITNYDESAC----DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST   80 (282)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred             HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhh----HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence            345556666665 58999999999999998887653    2555552       23333333333332222222111000


Q ss_pred             CCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Q 013549          180 KPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAE  258 (441)
Q Consensus       180 ~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~  258 (441)
                      ..-.+    .       +       .|=|.+        +. .-.....+.+.|+.++..+|+|++|.++|++++..   
T Consensus        81 l~a~~----~-------~-------~g~y~~--------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---  131 (282)
T 4f3v_A           81 LNARI----A-------I-------GGLYGD--------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---  131 (282)
T ss_dssp             GCCEE----E-------C-------CTTTCC--------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---
T ss_pred             hhhhh----c-------c-------CCcccc--------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence            00000    0       0       000000        00 00011345677899999999999999999886643   


Q ss_pred             hcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhc
Q 013549          259 QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAM  337 (441)
Q Consensus       259 ~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~  337 (441)
                                +     |++  + ...++|.++...|+|++|+.+|+++       ....+|.. .....+||.++..+|+
T Consensus       132 ----------~-----p~~--~-~~~~~a~l~~~~~r~~dA~~~l~~a-------~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          132 ----------G-----SEH--L-VAWMKAVVYGAAERWTDVIDQVKSA-------GKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             ----------T-----CHH--H-HHHHHHHHHHHTTCHHHHHHHHTTG-------GGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ----------C-----Cch--H-HHHHHHHHHHHcCCHHHHHHHHHHh-------hccCCcccHHHHHHHHHHHHHHCCC
Confidence                      1     222  3 6789999999999999999999755       33346765 4589999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhcCCCCCcc-hHhhhccHHHHHHHhccHHHHHHHhhchhhHHHHHHHHHHHHHhccChh
Q 013549          338 QEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVS  416 (441)
Q Consensus       338 ~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~-~~~~l~nl~~~~~~~g~yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~  416 (441)
                      +++|      +..|++++.     ++..|. ......+++.++..+|+.+           ||..+.+++.....+  ..
T Consensus       187 ~~eA------l~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~d-----------eA~~~l~~a~a~~P~--~~  242 (282)
T 4f3v_A          187 FTEA------ERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNES-----------AAVALLEWLQTTHPE--PK  242 (282)
T ss_dssp             HHHH------HHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHSCC--HH
T ss_pred             HHHH------HHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCc--HH
Confidence            9987      899999862     222244 3445567777777766554           555666666666666  56


Q ss_pred             HHHHhcccC
Q 013549          417 LAEALNFSE  425 (441)
Q Consensus       417 ~~~~l~~~~  425 (441)
                      ..++|....
T Consensus       243 ~~~aL~~~~  251 (282)
T 4f3v_A          243 VAAALKDPS  251 (282)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHhCCC
Confidence            777776433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=1.2e-08  Score=85.92  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=84.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                      ..+..+..+|+|++|+.+|++++...+..   ..+..++|.++..+|+|++|+..|++++.+   ...            
T Consensus        33 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~------------   97 (148)
T 2dba_A           33 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGG------------   97 (148)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSC------------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---Ccc------------
Confidence            35777789999999999999999955544   566778899999999999999999999988   111            


Q ss_pred             chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Q 013549          274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL  325 (441)
Q Consensus       274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l  325 (441)
                           ...++.++|.+|..+|+|++|..+|++++.+     .++++.+...+
T Consensus        98 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l  139 (148)
T 2dba_A           98 -----DVKALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQEAL  139 (148)
T ss_dssp             -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHH
Confidence                 1245789999999999999999999999986     46666554433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.93  E-value=1.2e-08  Score=81.93  Aligned_cols=97  Identities=16%  Similarity=0.086  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .....+|..+..+|+|++|+.+|++++.+.   ..                 ...++.++|.+|..+|+|++|..+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~   64 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD---PH-----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKT   64 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CC-----------------cHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            445677889999999999999999999871   11                 1235789999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +.+        +|.....+.++|.+|..+|++++|      ...|++++++
T Consensus        65 ~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~  101 (118)
T 1elw_A           65 VDL--------KPDWGKGYSRKAAALEFLNRFEEA------KRTYEEGLKH  101 (118)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTT
T ss_pred             HHh--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHc
Confidence            986        344556789999999999999887      8889988765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.93  E-value=1.4e-08  Score=102.50  Aligned_cols=138  Identities=15%  Similarity=0.138  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      ....+|..+..+|+|++|+..|++||++.............  ....|  ....+++|+|.+|..+|+|++|+++|++||
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~--~~~~~--~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG--AKLQP--VALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHH--GGGHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHH--HHHHH--HHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            34567889999999999999999999975332100000000  00111  234578899999999999999999999999


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHH
Q 013549          308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE  387 (441)
Q Consensus       308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yae  387 (441)
                      .+        +|....++.++|.+|..+|++++|      ...|++|+++.    |+++   ....+++.++...+++.+
T Consensus       301 ~~--------~p~~~~a~~~lg~~~~~~g~~~eA------~~~l~~Al~l~----P~~~---~~~~~l~~~~~~~~~~~~  359 (370)
T 1ihg_A          301 EI--------DPSNTKALYRRAQGWQGLKEYDQA------LADLKKAQEIA----PEDK---AIQAELLKVKQKIKAQKD  359 (370)
T ss_dssp             TT--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCH---HHHHHHHHHHHHHHHHHH
T ss_pred             Hh--------CchhHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC----CCCH---HHHHHHHHHHHHHHHHHH
Confidence            85        466678899999999999999987      89999999873    3333   344556666666666655


Q ss_pred             HHH
Q 013549          388 ALS  390 (441)
Q Consensus       388 al~  390 (441)
                      +..
T Consensus       360 a~k  362 (370)
T 1ihg_A          360 KEK  362 (370)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.92  E-value=9.1e-09  Score=103.93  Aligned_cols=116  Identities=14%  Similarity=0.068  Sum_probs=95.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhh----------------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          198 KGLVELAHGNLESAESFFKGLQE----------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~----------------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      .|..+..+|+|++|+..|++++.                ..+....+..++|.+|..+|+|++|+.+|++||++   .. 
T Consensus       229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p-  304 (370)
T 1ihg_A          229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DP-  304 (370)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CT-
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---Cc-
Confidence            56777899999999999999998                22223455678899999999999999999999987   11 


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                    +  ...++.++|.+|..+|+|++|+..|++|+.+.        |.-.....+|+.++..+++++++
T Consensus       305 --------------~--~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          305 --------------S--NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             --------------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------h--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHH
Confidence                          1  13468999999999999999999999999873        44456778888999999998876

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.91  E-value=2.5e-09  Score=88.69  Aligned_cols=90  Identities=17%  Similarity=0.211  Sum_probs=71.2

Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      .+|+|++|+.+|++||++   ...            .|+  ...++.+||.+|..+|+|++|+++|++++.+        
T Consensus         2 ~~g~~~~A~~~~~~al~~---~~~------------~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------   56 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS---GLQ------------GKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------   56 (117)
T ss_dssp             -----CCCHHHHHHHHSS---CCC------------HHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             CCCcHHHHHHHHHHHHHc---CCC------------Ccc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            479999999999999986   100            122  2456889999999999999999999999987        


Q ss_pred             CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +|+...++.++|.+|..+|++++|      +..|++++++.
T Consensus        57 ~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~   91 (117)
T 3k9i_A           57 FPNHQALRVFYAMVLYNLGRYEQG------VELLLKIIAET   91 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence            455567889999999999999987      89999998874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=1.2e-08  Score=85.74  Aligned_cols=102  Identities=9%  Similarity=0.013  Sum_probs=84.5

Q ss_pred             chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT  304 (441)
Q Consensus       225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~  304 (441)
                      .......+|..+..+|+|++|+.+|++++++.   ..             . .....++.++|.+|..+|+|++|+.+|+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~-------------~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~   89 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---AT-------------P-QDQAVLHRNRAACHLKLEDYDKAETEAS   89 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---cc-------------c-hHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            34556778999999999999999999999761   10             0 0123467899999999999999999999


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +++.+        +|.....+.++|.+|..+|++++|      ...|++++++
T Consensus        90 ~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~al~~  128 (148)
T 2dba_A           90 KAIEK--------DGGDVKALYRRSQALEKLGRLDQA------VLDLQRCVSL  128 (148)
T ss_dssp             HHHHH--------TSCCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHH
T ss_pred             HHHhh--------CccCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHc
Confidence            99987        455567889999999999999987      8999999887

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.90  E-value=2.2e-09  Score=106.77  Aligned_cols=154  Identities=11%  Similarity=0.072  Sum_probs=90.1

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      .+..+..+.++|..+..+|+|++|+..|++++.+.+...            .+..+|++.++....              
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~------------~~~~~~~~~~~~~~l--------------  228 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF------------MFQLYGKYQDMALAV--------------  228 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH------------HHTCCHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch------------hhhhcccHHHHHHHH--------------
Confidence            356889999999999999999999999999988765531            111222222221100              


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549          184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                             ...+....+.++..+|+|++|+..|+++|...+....+..++|.+|..+|+|++|+..|++|+++.   ..  
T Consensus       229 -------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~---p~--  296 (338)
T 2if4_A          229 -------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA---PD--  296 (338)
T ss_dssp             -------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred             -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CC--
Confidence                   011223467788899999999999999999767677788899999999999999999999999882   11  


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQL-EAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~l-y~~qG~y~eAe~l~~rAL~i~  310 (441)
                                     ...+..+|+.+ ...+++++++..+|.+++...
T Consensus       297 ---------------~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~  329 (338)
T 2if4_A          297 ---------------DKAIRRELRALAEQEKALYQKQKEMYKGIFKGK  329 (338)
T ss_dssp             ------------------------------------------------
T ss_pred             ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence                           01245678877 455677888888998888654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.90  E-value=4e-09  Score=84.10  Aligned_cols=97  Identities=12%  Similarity=0.049  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .+...+|.++..+|+|++|+.+|++++++   ...                 ...++.++|.+|..+|+|++|+++|+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a   66 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPE-----------------ESKYWLMKGKALYNLERYEEAVDCYNYV   66 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcC-----------------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34456677888888888888888888877   111                 1235678888888888888888888888


Q ss_pred             HHHHHHhhCCCCch--HHHHHHHHHHHHHHh-hchhhhhhhHHHHHHHHHHHHH
Q 013549          307 LTKTEELFGSHHPK--VGVVLTCLALMFRNK-AMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       307 L~i~e~~lG~~HP~--va~~l~nLa~ly~~q-G~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +.+        .|.  ...++.++|.+|..+ |++++|      ...+++++..
T Consensus        67 ~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~A------~~~~~~~~~~  106 (112)
T 2kck_A           67 INV--------IEDEYNKDVWAAKADALRYIEGKEVEA------EIAEARAKLE  106 (112)
T ss_dssp             HHT--------SCCTTCHHHHHHHHHHHTTCSSCSHHH------HHHHHHHGGG
T ss_pred             HHh--------CcccchHHHHHHHHHHHHHHhCCHHHH------HHHHHHHhhc
Confidence            865        233  456778888888888 888776      7777777544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.90  E-value=2.8e-07  Score=91.13  Aligned_cols=236  Identities=9%  Similarity=-0.025  Sum_probs=170.7

Q ss_pred             HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhhhh
Q 013549           63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG--NYVEAIEKLQKVENFKNS  140 (441)
Q Consensus        63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG--~y~eA~e~~~ral~i~~~  140 (441)
                      ..+.++.....+   ..+..++|+.+++++|.+-        |+..++.+..+.++...|  +|++++..+.+++.+.+.
T Consensus        33 ~~~~~~~~a~~~---~~e~s~~aL~~t~~~L~~n--------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk  101 (306)
T 3dra_A           33 KQIMGLLLALMK---AEEYSERALHITELGINEL--------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK  101 (306)
T ss_dssp             HHHHHHHHHHHH---TTCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHC--------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc
Confidence            344444444322   3344579999999999854        445678999999999999  999999999999988876


Q ss_pred             hhhhhHHHHHHHHHHH----Hhc---CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHH--HH
Q 013549          141 ILGVRVAAMEALAGLY----LQL---GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE--SA  211 (441)
Q Consensus       141 ~lg~~~~al~~La~l~----~~~---G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~--eA  211 (441)
                      ..    .+++....+.    ..+   +++.++..++++++++--+       +....     ...+.+....|+++  ++
T Consensus       102 ~y----~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-------ny~aW-----~~R~~vl~~l~~~~~~~E  165 (306)
T 3dra_A          102 NY----QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-------NHHVW-----SYRKWLVDTFDLHNDAKE  165 (306)
T ss_dssp             CC----HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-------CHHHH-----HHHHHHHHHTTCTTCHHH
T ss_pred             cH----HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-------CHHHH-----HHHHHHHHHhcccChHHH
Confidence            53    2555555554    445   6788888888888743211       11222     23355556788998  99


Q ss_pred             HHHHHhhhhccCCchHHHHHHHHHHHHccC------hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH
Q 013549          212 ESFFKGLQEEEGCTGSAALSYGEYLHATRN------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA  285 (441)
Q Consensus       212 e~l~~~aL~~~~~~~~~a~~~a~~~~~qG~------y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n  285 (441)
                      ..++.+++..++....+-...+.++...|+      ++++.+++.++|.+   .        +.         .-.+-+.
T Consensus       166 L~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~--------p~---------n~SaW~y  225 (306)
T 3dra_A          166 LSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---C--------PQ---------NPSTWNY  225 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---C--------SS---------CHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---C--------CC---------CccHHHH
Confidence            999999999766666666666778888887      99999999999988   1        11         1246789


Q ss_pred             HHHHHHHcCCHHH-HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549          286 LGQLEAHMGNFGD-AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       286 Lg~ly~~qG~y~e-Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                      ++.++...|+..+ ..++..+++.+     ++.+|.-...+..||.+|..+|+.++|      ..+|+++.+
T Consensus       226 ~~~ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~al~~la~~~~~~~~~~~A------~~~~~~l~~  286 (306)
T 3dra_A          226 LLGIHERFDRSITQLEEFSLQFVDL-----EKDQVTSSFALETLAKIYTQQKKYNES------RTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHTTCCGGGGHHHHHTTEEG-----GGTEESCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhc-----cCCCCCCHHHHHHHHHHHHccCCHHHH------HHHHHHHHh
Confidence            9999999999554 55566666653     233566667899999999999998887      788888764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.84  E-value=4e-09  Score=104.81  Aligned_cols=127  Identities=15%  Similarity=0.163  Sum_probs=76.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCch-----------------HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTG-----------------SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK  260 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~-----------------~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~  260 (441)
                      .|..+..+|+|++|+.+|++++...+...                 .+..++|.+|..+|+|++|+..|++||++   ..
T Consensus       185 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p  261 (338)
T 2if4_A          185 DGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE---EE  261 (338)
T ss_dssp             HHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH---CT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC
Confidence            46677789999999999999998433222                 25678899999999999999999999998   11


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh-chh
Q 013549          261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQE  339 (441)
Q Consensus       261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG-~~e  339 (441)
                      .                 ...+++++|.+|..+|+|++|+..|++|+.+.        |.-...+.+|+.+...+. ..+
T Consensus       262 ~-----------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          262 K-----------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             T-----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred             C-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHH
Confidence            1                 13468999999999999999999999999864        344456667777755443 443


Q ss_pred             hhhhhHHHHHHHHHHHHHh
Q 013549          340 HSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       340 eA~~~~~Ae~ly~rAL~i~  358 (441)
                      +      +..+|++++...
T Consensus       317 ~------a~~~~~~~l~~~  329 (338)
T 2if4_A          317 K------QKEMYKGIFKGK  329 (338)
T ss_dssp             -------------------
T ss_pred             H------HHHHHHHhhCCC
Confidence            3      367888877653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.82  E-value=2.2e-08  Score=79.69  Aligned_cols=94  Identities=18%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|.++..+|+|++|..+|++++...+....+..++|.++..+|+|++|+.+|++++++.    .    ...         
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~----~~~---------   74 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI----E----DEY---------   74 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----C----CTT---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----c----ccc---------
Confidence            57778899999999999999999666666778889999999999999999999999871    1    100         


Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHM-GNFGDAEEILTRTLTK  309 (441)
Q Consensus       278 ~~~~al~nLg~ly~~q-G~y~eAe~l~~rAL~i  309 (441)
                       ...++.++|.+|..+ |++++|++++++++..
T Consensus        75 -~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           75 -NKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             -CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             -hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence             124578999999999 9999999999998753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.73  E-value=8.9e-09  Score=106.66  Aligned_cols=167  Identities=16%  Similarity=0.040  Sum_probs=43.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH
Q 013549          114 MSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR  193 (441)
Q Consensus       114 La~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~  193 (441)
                      +..+....|+.++|.+.+++.        .. ...|..|+..+.++|+..+|...|.++-+      +      ....  
T Consensus         9 ~~~ll~~~~~ld~A~~fae~~--------~~-~~vWs~La~A~l~~g~~~eAIdsfika~D------~------~~y~--   65 (449)
T 1b89_A            9 VQVLIEHIGNLDRAYEFAERC--------NE-PAVWSQLAKAQLQKGMVKEAIDSYIKADD------P------SSYM--   65 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHccCHHHHHHHHHhC--------CC-hHHHHHHHHHHHHcCCHHHHHHHHHcCCC------H------HHHH--
Confidence            455667889999999999986        11 13788999999999999999988876511      1      0110  


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          194 ANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       194 a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                         ..+......|+|++|+++++.+++..+. +.+-..++..|.+.|++.+++++++.         .            
T Consensus        66 ---~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~---------p------------  120 (449)
T 1b89_A           66 ---EVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING---------P------------  120 (449)
T ss_dssp             -----------------------------------------------CHHHHTTTTTC---------C------------
T ss_pred             ---HHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC---------C------------
Confidence               1122344699999999999999984322 33445567778889999999977741         0            


Q ss_pred             chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549          274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR  353 (441)
Q Consensus       274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r  353 (441)
                           ...+.+++|..+.++|+|++|..+|.++                ..+.+||.++..+|+|++|      ...|++
T Consensus       121 -----n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~A------Vea~~K  173 (449)
T 1b89_A          121 -----NNAHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAA------VDGARK  173 (449)
T ss_dssp             ---------------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHH------HHHHHH
T ss_pred             -----cHHHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHH------HHHHHH
Confidence                 1136789999999999999999999987                5889999999999999987      777777


Q ss_pred             HH
Q 013549          354 AL  355 (441)
Q Consensus       354 AL  355 (441)
                      |.
T Consensus       174 A~  175 (449)
T 1b89_A          174 AN  175 (449)
T ss_dssp             HT
T ss_pred             cC
Confidence            73

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.69  E-value=5.8e-07  Score=89.05  Aligned_cols=201  Identities=14%  Similarity=0.086  Sum_probs=131.2

Q ss_pred             HHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcch
Q 013549           85 GMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDT  164 (441)
Q Consensus        85 Al~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~  164 (441)
                      |+..+++.++.     +  +++ ..++..+|.++..+|++++|+..+++.+...+..  ......--++.++..+|+.+.
T Consensus        85 a~~~l~~l~~~-----~--~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--~~lea~~l~vqi~L~~~r~d~  154 (310)
T 3mv2_B           85 NIEELENLLKD-----K--QNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDEAE--GTTELLLLAIEVALLNNNVST  154 (310)
T ss_dssp             CCHHHHHTTTT-----S--CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--THHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhc-----C--CCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--CcHHHHHHHHHHHHHCCCHHH
Confidence            67777776642     1  222 2335699999999999999999999986654310  111233446778999999999


Q ss_pred             hHHHHHHHHHHHHhcCCC-cchhhhhhHhHHHHHHHHHHHHcC--CHHHHHHHHHhhhhccCC--chHHHHHHHHHHHHc
Q 013549          165 SSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVELAHG--NLESAESFFKGLQEEEGC--TGSAALSYGEYLHAT  239 (441)
Q Consensus       165 A~~l~~~~L~i~~~~~~~-~~~~~~~l~~~a~al~gl~~~~qG--~y~eAe~l~~~aL~~~~~--~~~~a~~~a~~~~~q  239 (441)
                      |...+++..++-    ++ -|.+...+   .....+.+.+.+|  +|.+|..+|++.....+.  ......+   ++..+
T Consensus       155 A~k~l~~~~~~~----~d~~~~~d~~l---~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~  224 (310)
T 3mv2_B          155 ASTIFDNYTNAI----EDTVSGDNEMI---LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ  224 (310)
T ss_dssp             HHHHHHHHHHHS----CHHHHHHHHHH---HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHhcC----ccccccchHHH---HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc
Confidence            988887764322    10 01111112   1112344556666  999999999998776554  1222333   78899


Q ss_pred             cChHHHHHHHHHHHHHHHh--hcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          240 RNFLLAKKFYQKVIEVLAE--QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       240 G~y~eA~~ly~rAL~i~~~--~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      |+|++|+..+++.++..-+  .+.     ..     .|+  ...++.|+..+...+|+  +|.+++.|+..     .-|+
T Consensus       225 g~~~eAe~~L~~l~~~~p~~~~k~-----~~-----~p~--~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~  285 (310)
T 3mv2_B          225 RNIAEAQGIVELLLSDYYSVEQKE-----NA-----VLY--KPTFLANQITLALMQGL--DTEDLTNQLVK-----LDHE  285 (310)
T ss_dssp             TCHHHHHHHHHHHHSHHHHTTTCH-----HH-----HSS--HHHHHHHHHHHHHHTTC--TTHHHHHHHHH-----TTCC
T ss_pred             CCHHHHHHHHHHHHHhcccccccc-----cC-----CCC--CHHHHHHHHHHHHHhCh--HHHHHHHHHHH-----hCCC
Confidence            9999999999977665211  110     00     012  13467899999999998  89999888765     4599


Q ss_pred             CchHHHH
Q 013549          318 HPKVGVV  324 (441)
Q Consensus       318 HP~va~~  324 (441)
                      ||-+...
T Consensus       286 hp~i~d~  292 (310)
T 3mv2_B          286 HAFIKHH  292 (310)
T ss_dssp             CHHHHHH
T ss_pred             ChHHHHH
Confidence            9987653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.68  E-value=1.5e-07  Score=72.83  Aligned_cols=82  Identities=20%  Similarity=0.277  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .+...+|.++..+|+|++|+.+|++++++   ...                 ...++.++|.+|..+|+|++|+.+|+++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPN-----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCC-----------------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44567788999999999999999999987   111                 1235789999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKA  336 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG  336 (441)
                      +.+        +|.....+.++|.+|..+|
T Consensus        70 ~~~--------~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           70 LEL--------DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHhcC
Confidence            986        3555567888999887664

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.67  E-value=3.6e-06  Score=83.11  Aligned_cols=222  Identities=10%  Similarity=-0.053  Sum_probs=160.6

Q ss_pred             CChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHH
Q 013549          122 GNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG--QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKG  199 (441)
Q Consensus       122 G~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G--~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~g  199 (441)
                      ...++|+.++.+++.+.++..    .+++..+.+...+|  .+.++..++++++.+-    |.   .......|...+..
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~----taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk---~y~aW~~R~~iL~~  115 (306)
T 3dra_A           47 EYSERALHITELGINELASHY----TIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EK---NYQIWNYRQLIIGQ  115 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TT---CCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcHHH----HHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cc---cHHHHHHHHHHHHH
Confidence            444699999999999987753    47888888888888  8888888888887432    21   12344444443422


Q ss_pred             HHHHHc---CCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChH--HHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          200 LVELAH---GNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFL--LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       200 l~~~~q---G~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~--eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                      +. ...   ++++++..++.+++..++....+-..-+.++...|+++  ++.+++.++|++   .-.          |  
T Consensus       116 ~~-~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~----------N--  179 (306)
T 3dra_A          116 IM-ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLK----------N--  179 (306)
T ss_dssp             HH-HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTT----------C--
T ss_pred             HH-HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCC----------C--
Confidence            22 223   89999999999999976666667666777888899999  999999999988   111          1  


Q ss_pred             hhHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHH
Q 013549          275 LEEVALAATFALGQLEAHMGN------FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE  348 (441)
Q Consensus       275 ~~~~~~~al~nLg~ly~~qG~------y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae  348 (441)
                           ..+.++.+.++...|+      ++++.+++.+++.+        +|.=-+..++++.++...|+..++     ..
T Consensus       180 -----~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~-----~~  241 (306)
T 3dra_A          180 -----NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQ-----LE  241 (306)
T ss_dssp             -----HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGG-----GH
T ss_pred             -----HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHH-----HH
Confidence                 2357888899999888      88888888888764        677788899999999999986654     25


Q ss_pred             HHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          349 GLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       349 ~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      .++.+++++-+    ..+.....+..++.++..+|++++|+...
T Consensus       242 ~~~~~~~~~~~----~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          242 EFSLQFVDLEK----DQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHTTEEGGG----TEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhccC----CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            56666554321    12222335777888888778887777665

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.66  E-value=7.9e-08  Score=77.11  Aligned_cols=90  Identities=13%  Similarity=0.072  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .+...+|.++..+|+|++|+..|++|+++   ...                 ...++.++|.+|..+|+|++|++.|+++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQ-----------------NPVGYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-----------------CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34567899999999999999999999998   111                 1245789999999999999999999999


Q ss_pred             HHHHHHhhCCCCch---HHHHHHHHHHHHHHhhchhhh
Q 013549          307 LTKTEELFGSHHPK---VGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       307 L~i~e~~lG~~HP~---va~~l~nLa~ly~~qG~~eeA  341 (441)
                      +.+     .|+++.   ....+.++|.+|..+|++++|
T Consensus        65 l~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           65 LRY-----TSTAEHVAIRSKLQYRLELAQGAVGSVQIP   97 (111)
T ss_dssp             HTS-----CSSTTSHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHh-----CCCccHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence            975     344422   367889999999999988776

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.65  E-value=3.6e-08  Score=88.47  Aligned_cols=87  Identities=11%  Similarity=0.134  Sum_probs=74.1

Q ss_pred             HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccCh----------HHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNF----------LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y----------~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                      ..++|++|.+.|++++...+....+..++|.++..+|+|          ++|+..|++||+|   .     +.       
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---d-----P~-------   78 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---D-----PK-------   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---C-----TT-------
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---C-----cC-------
Confidence            567899999999999998777888889999999998876          5999999999999   1     11       


Q ss_pred             chhHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHH
Q 013549          274 ALEEVALAATFALGQLEAHMG-----------NFGDAEEILTRTLTKT  310 (441)
Q Consensus       274 ~~~~~~~~al~nLg~ly~~qG-----------~y~eAe~l~~rAL~i~  310 (441)
                           ...+++|||.+|..+|           +|++|+.+|++||+|.
T Consensus        79 -----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           79 -----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence                 1357899999999986           8999999999999884

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.64  E-value=1.4e-07  Score=77.28  Aligned_cols=84  Identities=11%  Similarity=0.059  Sum_probs=72.2

Q ss_pred             HHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH
Q 013549          209 ESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ  288 (441)
Q Consensus       209 ~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~  288 (441)
                      ++|...|++++...+....+..++|.+|..+|+|++|+..|++++++.   ..                 ...++.+||.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-----------------~~~~~~~la~   61 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PT-----------------YSVAWKWLGK   61 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CC-----------------cHHHHHHHHH
Confidence            468899999999767677788899999999999999999999999881   11                 1245789999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          289 LEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       289 ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      +|..+|++++|+..|++++.+...
T Consensus        62 ~~~~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           62 TLQGQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhccc
Confidence            999999999999999999998754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.56  E-value=1e-07  Score=76.51  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      ..++.++|.++..+|+|++|++.|++++.+        +|....++.++|.+|..+|++++|      ...|++++++. 
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~-   68 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQA------IQMCQQGLRYT-   68 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTSC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC-
Confidence            346789999999999999999999999987        455567789999999999999987      89999998763 


Q ss_pred             cCCCCCcc---hHhhhccHHHHHHHhccHHHHHH
Q 013549          360 APPLESEG---VETKVDRTDIVALARGGYAEALS  390 (441)
Q Consensus       360 ~~~~~~~~---~~~~l~nl~~~~~~~g~yaeal~  390 (441)
                         |++++   ....+.+++.++...|.+.+++.
T Consensus        69 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           69 ---STAEHVAIRSKLQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             ---SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred             ---CCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence               23322   24455677777777776655544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.55  E-value=4.3e-07  Score=78.37  Aligned_cols=111  Identities=10%  Similarity=0.054  Sum_probs=91.0

Q ss_pred             cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH
Q 013549          205 HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF  284 (441)
Q Consensus       205 qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~  284 (441)
                      .+++++|..+|+++.+..+..  +.  +|.+|...+.+++|..+|++|.+.     +                 ...+++
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~-----g-----------------~~~a~~   61 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL-----N-----------------SGNGCR   61 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT-----T-----------------CHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC-----C-----------------CHHHHH
Confidence            457899999999999844322  22  888888889999999999999875     2                 124689


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hhchhhhhhhHHHHHHHHHHHH
Q 013549          285 ALGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALE  356 (441)
Q Consensus       285 nLg~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG~~eeA~~~~~Ae~ly~rAL~  356 (441)
                      +||.+|..    .+++++|.++|++|.+.       .|   ..++.+||.+|..    .+++++|      ..+|++|.+
T Consensus        62 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A------~~~~~~Aa~  125 (138)
T 1klx_A           62 FLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQA------VKTFEKACR  125 (138)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHH------HHHHHHHHH
T ss_pred             HHHHHHHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHH------HHHHHHHHH
Confidence            99999999    99999999999999863       33   4678999999999    8888776      899999977


Q ss_pred             H
Q 013549          357 F  357 (441)
Q Consensus       357 i  357 (441)
                      .
T Consensus       126 ~  126 (138)
T 1klx_A          126 L  126 (138)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.55  E-value=6.1e-07  Score=69.26  Aligned_cols=82  Identities=16%  Similarity=0.202  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      ..++.++|.+|..+|+|++|+++|++++.+        +|....++.++|.+|..+|++++|      ...|++++++. 
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~-   73 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD-   73 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC-
Confidence            346789999999999999999999999986        345567889999999999999987      89999998873 


Q ss_pred             cCCCCCcchHhhhccHHHHHHHh
Q 013549          360 APPLESEGVETKVDRTDIVALAR  382 (441)
Q Consensus       360 ~~~~~~~~~~~~l~nl~~~~~~~  382 (441)
                         |+++   ....+++.++..+
T Consensus        74 ---p~~~---~~~~~l~~~~~~~   90 (91)
T 1na3_A           74 ---PNNA---EAKQNLGNAKQKQ   90 (91)
T ss_dssp             ---TTCH---HHHHHHHHHHHHH
T ss_pred             ---CCCH---HHHHHHHHHHHhc
Confidence               2333   3455677766554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.54  E-value=2e-07  Score=76.40  Aligned_cols=83  Identities=14%  Similarity=0.184  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549          243 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG  322 (441)
Q Consensus       243 ~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va  322 (441)
                      ++|+..|++++++   ..     .            ...++.+||.+|..+|+|++|+.+|++++.+        .|...
T Consensus         2 ~~a~~~~~~al~~---~p-----~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~   53 (115)
T 2kat_A            2 QAITERLEAMLAQ---GT-----D------------NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYS   53 (115)
T ss_dssp             CCHHHHHHHHHTT---TC-----C------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             hHHHHHHHHHHHh---CC-----C------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcH
Confidence            3678888888876   11     1            1246789999999999999999999999986        35556


Q ss_pred             HHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          323 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       323 ~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      .++.+||.+|..+|++++|      ...|++++++..
T Consensus        54 ~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~   84 (115)
T 2kat_A           54 VAWKWLGKTLQGQGDRAGA------RQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHH------HHHHHHHHHhcc
Confidence            7889999999999999987      899999999863

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.54  E-value=2e-07  Score=83.56  Aligned_cols=88  Identities=11%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHH
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG----------DAEEILTRT  306 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~----------eAe~l~~rA  306 (441)
                      ...+.|++|...|++|+++   .-               .  ...+++|+|.++..+|+|+          +|+..|++|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l---~P---------------~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~A   72 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS---NP---------------L--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   72 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---CT---------------T--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHH---CC---------------C--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHH
Confidence            3568899999999999998   11               1  1346899999999999875          666666666


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhh-----------chhhhhhhHHHHHHHHHHHHHh
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKA-----------MQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG-----------~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      |.|        .|+...+++|||.+|..+|           ++++|      ...|+|||+|-
T Consensus        73 L~l--------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA------~~~~~kAl~l~  121 (158)
T 1zu2_A           73 LLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA------TQFFQQAVDEQ  121 (158)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHHHHHHC
T ss_pred             HHh--------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH------HHHHHHHHHhC
Confidence            665        3566678999999999986           67765      89999999983

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.43  E-value=9.7e-06  Score=80.25  Aligned_cols=176  Identities=16%  Similarity=0.123  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---
Q 013549          148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC---  224 (441)
Q Consensus       148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~---  224 (441)
                      ++..++.++...|++++|..++.+.+..    .+ .   ...  ..+.++...+++.+||++.|.+.+++.....+.   
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~----~~-~---~~~--lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~  171 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDN----DE-A---EGT--TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS  171 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTS----SC-S---TTH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcc----CC-C---cCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc
Confidence            4456788899999999999888776411    11 0   011  223345667788999999999999998775431   


Q ss_pred             -chHHHHHHHH--HHHHcc--ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549          225 -TGSAALSYGE--YLHATR--NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA  299 (441)
Q Consensus       225 -~~~~a~~~a~--~~~~qG--~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA  299 (441)
                       ...+...+++  +...+|  ++.+|..+|++..+-     .    +.+.         ....+.|   ++..+|+|++|
T Consensus       172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-----~----p~~~---------~~~lLln---~~~~~g~~~eA  230 (310)
T 3mv2_B          172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-----F----PTWK---------TQLGLLN---LHLQQRNIAEA  230 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-----S----CSHH---------HHHHHHH---HHHHHTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-----C----CCcc---------cHHHHHH---HHHHcCCHHHH
Confidence             1233444543  344555  999999999995432     1    0000         1122334   89999999999


Q ss_pred             HHHHHHHHHHHH-----HhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549          300 EEILTRTLTKTE-----ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE  369 (441)
Q Consensus       300 e~l~~rAL~i~e-----~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~  369 (441)
                      +..+++.+..+=     +...++||   .++.|+..++..+|+  +|      +.+++++.+.    .|+||-+.
T Consensus       231 e~~L~~l~~~~p~~~~k~~~~p~~~---~~LaN~i~l~~~lgk--~a------~~l~~qL~~~----~P~hp~i~  290 (310)
T 3mv2_B          231 QGIVELLLSDYYSVEQKENAVLYKP---TFLANQITLALMQGL--DT------EDLTNQLVKL----DHEHAFIK  290 (310)
T ss_dssp             HHHHHHHHSHHHHTTTCHHHHSSHH---HHHHHHHHHHHHTTC--TT------HHHHHHHHHT----TCCCHHHH
T ss_pred             HHHHHHHHHhcccccccccCCCCCH---HHHHHHHHHHHHhCh--HH------HHHHHHHHHh----CCCChHHH
Confidence            999997777642     22345555   557777788888887  44      7788877544    58888654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.31  E-value=1.9e-06  Score=69.59  Aligned_cols=65  Identities=14%  Similarity=0.194  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      .++.+||.+|..+|+|++|++.|++++.+        .|....++.+||.+|..+|++++|      ...|++++++..
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~~   72 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDA------IDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhhh
Confidence            46789999999999999999999999986        344455899999999999999987      899999999864

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.27  E-value=7.3e-06  Score=66.00  Aligned_cols=61  Identities=21%  Similarity=0.129  Sum_probs=55.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549          196 AVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVL  256 (441)
Q Consensus       196 al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~  256 (441)
                      ...|.++..+|+|++|+..|++++...+....+...+|.+|..+|++++|+..|++++++.
T Consensus        11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A           11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            3468888999999999999999999777677788899999999999999999999999994

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.24  E-value=7.1e-06  Score=64.81  Aligned_cols=68  Identities=12%  Similarity=0.151  Sum_probs=55.4

Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~-al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ...|..+..+|+|++|+..|++++++   ...                 ... ++.++|.+|..+|+|++|++.|++++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT---EPV-----------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH---CSS-----------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH---CCC-----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45677888999999999999999987   111                 124 678999999999999999999999997


Q ss_pred             HHHHhhCCCCchHH
Q 013549          309 KTEELFGSHHPKVG  322 (441)
Q Consensus       309 i~e~~lG~~HP~va  322 (441)
                      +     .|+++.+-
T Consensus        64 ~-----~p~~~~~~   72 (99)
T 2kc7_A           64 L-----NPDSPALQ   72 (99)
T ss_dssp             H-----CTTSTHHH
T ss_pred             c-----CCCcHHHH
Confidence            6     56666543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.19  E-value=0.00012  Score=73.44  Aligned_cols=242  Identities=10%  Similarity=-0.045  Sum_probs=156.1

Q ss_pred             hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Q 013549           59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENF  137 (441)
Q Consensus        59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG-~y~eA~e~~~ral~i  137 (441)
                      |+-...|....... +   +.+...+|+.+++++|.+-        |.-.++.+..+.++...| .++++++.+.+++.+
T Consensus        51 ~~y~~~~~~~r~~~-~---~~e~se~AL~lt~~~L~~n--------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~  118 (349)
T 3q7a_A           51 EEYKDAMDYFRAIA-A---KEEKSERALELTEIIVRMN--------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ  118 (349)
T ss_dssp             HHHHHHHHHHHHHH-H---TTCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH-H---hCCCCHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            34444454444443 2   3456679999999999754        445678999999999999 599999999999888


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhc-C-CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHH------
Q 013549          138 KNSILGVRVAAMEALAGLYLQL-G-QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE------  209 (441)
Q Consensus       138 ~~~~lg~~~~al~~La~l~~~~-G-~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~------  209 (441)
                      .+...    .+++....+...+ + +++++..+++++++       .++.+......|     +.+....|+++      
T Consensus       119 nPKny----~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~-------~dpkNy~AW~~R-----~wvl~~l~~~~~~~~~~  182 (349)
T 3q7a_A          119 NLKSY----QVWHHRLLLLDRISPQDPVSEIEYIHGSLL-------PDPKNYHTWAYL-----HWLYSHFSTLGRISEAQ  182 (349)
T ss_dssp             TCCCH----HHHHHHHHHHHHHCCSCCHHHHHHHHHHTS-------SCTTCHHHHHHH-----HHHHHHHHHTTCCCHHH
T ss_pred             CCCcH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHH-------hCCCCHHHHHHH-----HHHHHHhccccccchhh
Confidence            76643    3677777777776 6 77777766666642       222222333333     33334455666      


Q ss_pred             --HHHHHHHhhhhccCCchHHHHHHHHHHHHccC-------hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHH
Q 013549          210 --SAESFFKGLQEEEGCTGSAALSYGEYLHATRN-------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL  280 (441)
Q Consensus       210 --eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~-------y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~  280 (441)
                        ++..++++++..++....+-...+.++...|+       ++++.+++.++|.+   .-        .         .-
T Consensus       183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P--------~---------n~  242 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IP--------H---------NV  242 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CT--------T---------CH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CC--------C---------CH
Confidence              89999999999776666666777778888887       78999999999987   11        1         12


Q ss_pred             HHHHHHHHHHHHcCCHHH-------------HHHHHHHHHHHHHHhhCCCC-----chHHHHHHHHHHHHHHhhchhhhh
Q 013549          281 AATFALGQLEAHMGNFGD-------------AEEILTRTLTKTEELFGSHH-----PKVGVVLTCLALMFRNKAMQEHSS  342 (441)
Q Consensus       281 ~al~nLg~ly~~qG~y~e-------------Ae~l~~rAL~i~e~~lG~~H-----P~va~~l~nLa~ly~~qG~~eeA~  342 (441)
                      .+-+.+..++...|+-..             =.+.+....+..++.++..+     +..--.+.-||.+|..+|+.++| 
T Consensus       243 SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a-  321 (349)
T 3q7a_A          243 SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDA-  321 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHH-
T ss_pred             HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHH-
Confidence            356788888888776410             01112223333333333331     34455788899999999987765 


Q ss_pred             hhHHHHHHHHHH
Q 013549          343 ALLIQEGLYRRA  354 (441)
Q Consensus       343 ~~~~Ae~ly~rA  354 (441)
                           ..+|...
T Consensus       322 -----~~~~~~l  328 (349)
T 3q7a_A          322 -----AKVFEKL  328 (349)
T ss_dssp             -----HHHHHHH
T ss_pred             -----HHHHHHH
Confidence                 5555553

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.14  E-value=0.00011  Score=80.18  Aligned_cols=234  Identities=9%  Similarity=-0.004  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549           82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAI-EKLQKVENFKNSILGVRVAAMEALAGLYLQLG  160 (441)
Q Consensus        82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~-e~~~ral~i~~~~lg~~~~al~~La~l~~~~G  160 (441)
                      ..+...+|++||..        .|.........+..+..+|+.++|. ..|++++..++...    ..+...+.+....|
T Consensus       325 ~~Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~----~Lwl~~a~~ee~~~  392 (679)
T 4e6h_A          325 KARMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA----VLAFSLSEQYELNT  392 (679)
T ss_dssp             HHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhC
Confidence            56678899999974        3445677888899999999999997 99999988776532    24556777888899


Q ss_pred             CcchhHHHHHHHHHHHHhc-------CCCcchhhhhh---HhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCchHHH
Q 013549          161 QDDTSSVVADKCLQLCEKH-------KPENYKTYGAV---NSRANAVKGLVELAHGNLESAESFFKGLQEE-EGCTGSAA  229 (441)
Q Consensus       161 ~~~~A~~l~~~~L~i~~~~-------~~~~~~~~~~l---~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a  229 (441)
                      +.+.|..++++++......       .+........+   ..............+|+.+.|..+|.+|+.. ..+...+.
T Consensus       393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly  472 (679)
T 4e6h_A          393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY  472 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH
Confidence            9999999999998764211       11000000000   0000111112233578999999999999985 44444555


Q ss_pred             HHHHHHHHHc-cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       230 ~~~a~~~~~q-G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ...+.+.... ++++.|..+|+++|..+   ..     .       +     ......+.....+|+.+.|..+|++|+.
T Consensus       473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~---p~-----~-------~-----~~w~~y~~fe~~~~~~~~AR~lferal~  532 (679)
T 4e6h_A          473 LENAYIEYHISKDTKTACKVLELGLKYF---AT-----D-------G-----EYINKYLDFLIYVNEESQVKSLFESSID  532 (679)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH---TT-----C-------H-----HHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHC---CC-----c-------h-----HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            5566665554 45999999999999873   11     0       1     1235667778889999999999999986


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      ...     +-.............-...|..+.+      ..+++|+++..
T Consensus       533 ~~~-----~~~~~~~lw~~~~~fE~~~G~~~~~------~~v~~R~~~~~  571 (679)
T 4e6h_A          533 KIS-----DSHLLKMIFQKVIFFESKVGSLNSV------RTLEKRFFEKF  571 (679)
T ss_dssp             TSS-----STTHHHHHHHHHHHHHHHTCCSHHH------HHHHHHHHHHS
T ss_pred             hcC-----CHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence            432     1113445666666777777887765      78888887765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.11  E-value=2.3e-05  Score=67.32  Aligned_cols=88  Identities=15%  Similarity=0.210  Sum_probs=74.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM  273 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~  273 (441)
                      +|.+|...+.+++|..+|+++.+..  ++.+..++|.+|..    .+++++|..+|++|.+.     +            
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g------------   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----N------------   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T------------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----C------------
Confidence            5777777788999999999999852  45678899999988    89999999999999865     2            


Q ss_pred             chhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 013549          274 ALEEVALAATFALGQLEAH----MGNFGDAEEILTRTLTK  309 (441)
Q Consensus       274 ~~~~~~~~al~nLg~ly~~----qG~y~eAe~l~~rAL~i  309 (441)
                           ...++++||.+|..    .+++++|.++|++|.+.
T Consensus        92 -----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           92 -----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence                 12468999999999    99999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.09  E-value=4.1e-05  Score=81.61  Aligned_cols=176  Identities=11%  Similarity=-0.023  Sum_probs=135.2

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhhhhhhhhhHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----------YVEAIEKLQKVENFKNSILGVRVAA  148 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~----------y~eA~e~~~ral~i~~~~lg~~~~a  148 (441)
                      ....+||+.++++++.+        .|...++.++.+.++...|+          |++|++.+.+++.+.+..-    .+
T Consensus        42 ~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y----~a  109 (567)
T 1dce_A           42 GELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GT  109 (567)
T ss_dssp             TCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HH
T ss_pred             CCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH----HH
Confidence            33456899999999974        45567789999999999999          9999999999988776542    47


Q ss_pred             HHHHHHHHHhcC--CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcC-CHHHHHHHHHhhhhccCCc
Q 013549          149 MEALAGLYLQLG--QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG-NLESAESFFKGLQEEEGCT  225 (441)
Q Consensus       149 l~~La~l~~~~G--~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG-~y~eAe~l~~~aL~~~~~~  225 (441)
                      |+..+.+...+|  ++.++..++++++++-.+.       ..+.     ...+.+....| +++++..++.+++..++..
T Consensus       110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW-----~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n  177 (567)
T 1dce_A          110 WHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCW-----DYRRFVAAQAAVAPAEELAFTDSLITRNFSN  177 (567)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHH-----HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence            888889999999  4588999888887543221       1222     23455556778 8999999999999977767


Q ss_pred             hHHHHHHHHHHHHc--------------cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549          226 GSAALSYGEYLHAT--------------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA  291 (441)
Q Consensus       226 ~~~a~~~a~~~~~q--------------G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~  291 (441)
                      ..+....+.++...              ++|++|.++|.+|+.+   .     +..            -.+.+.++.++.
T Consensus       178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~---~-----P~~------------~saW~y~~~ll~  237 (567)
T 1dce_A          178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---D-----PND------------QSAWFYHRWLLG  237 (567)
T ss_dssp             HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH---C-----SSC------------SHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh---C-----CCC------------ccHHHHHHHHHh
Confidence            66767777777664              7789999999999988   1     111            135788999999


Q ss_pred             HcCCHHH
Q 013549          292 HMGNFGD  298 (441)
Q Consensus       292 ~qG~y~e  298 (441)
                      ..|++++
T Consensus       238 ~~~~~~~  244 (567)
T 1dce_A          238 RAEPHDV  244 (567)
T ss_dssp             CCCCCSC
T ss_pred             cCCCccc
Confidence            9999776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.08  E-value=0.00042  Score=69.60  Aligned_cols=189  Identities=8%  Similarity=-0.036  Sum_probs=133.6

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhcCCCcc
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ-DDTSSVVADKCLQLCEKHKPENY  184 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~-~~~A~~l~~~~L~i~~~~~~~~~  184 (441)
                      ....+++.+..++...+...+|++++.+++.+.+...    .+++....+...+|. +.++..++++++.+    .+   
T Consensus        52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y----taWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nP---  120 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY----TVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NL---  120 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TC---
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CC---
Confidence            3445555555555566777899999999999887653    367777777778884 78888888777622    22   


Q ss_pred             hhhhhhHhHHHHHHHHHHHHc-C-CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChH--------HHHHHHHHHHH
Q 013549          185 KTYGAVNSRANAVKGLVELAH-G-NLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFL--------LAKKFYQKVIE  254 (441)
Q Consensus       185 ~~~~~l~~~a~al~gl~~~~q-G-~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~--------eA~~ly~rAL~  254 (441)
                      ........|     +.+.... + +++++..++.+++..++....+-..-+.++...|+++        ++.+++.++|+
T Consensus       121 Kny~aW~hR-----~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~  195 (349)
T 3q7a_A          121 KSYQVWHHR-----LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR  195 (349)
T ss_dssp             CCHHHHHHH-----HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHH-----HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence            122333333     3333333 7 8999999999999966666566666677778888888        99999999998


Q ss_pred             HHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 013549          255 VLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN-------FGDAEEILTRTLTKTEELFGSHHPKVGVVLTC  327 (441)
Q Consensus       255 i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~-------y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~n  327 (441)
                      +   .-.                 ...+.++.+.++...|+       ++++.+++.+++.+        +|.=.+..++
T Consensus       196 ~---dp~-----------------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Y  247 (349)
T 3q7a_A          196 V---DGR-----------------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNY  247 (349)
T ss_dssp             H---CTT-----------------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             h---CCC-----------------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence            7   111                 12467899999999998       45555555555543        6777788888


Q ss_pred             HHHHHHHhhch
Q 013549          328 LALMFRNKAMQ  338 (441)
Q Consensus       328 La~ly~~qG~~  338 (441)
                      +..++..-|+.
T Consensus       248 lr~Ll~~~~~~  258 (349)
T 3q7a_A          248 LRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHhcCCC
Confidence            88999887764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.08  E-value=4.7e-05  Score=62.23  Aligned_cols=81  Identities=11%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      -.+.+|..+..+|+|.+|+.+|++|+......      +..+.       .....+.+||.+|..+|++++|..++++|+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~------~~~~~-------~~~~i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEG------EISTI-------DKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------CCCSS-------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhcc------CCCcc-------cHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34678999999999999999999999885211      11121       123467899999999999999999999999


Q ss_pred             HHHHHhhCCCCchHHHHHHHHH
Q 013549          308 TKTEELFGSHHPKVGVVLTCLA  329 (441)
Q Consensus       308 ~i~e~~lG~~HP~va~~l~nLa  329 (441)
                      .+     .|+|+.+   ++|++
T Consensus        74 ~l-----~P~~~~~---~~n~~   87 (104)
T 2v5f_A           74 EL-----DPEHQRA---NGNLK   87 (104)
T ss_dssp             HH-----CTTCHHH---HHHHH
T ss_pred             hc-----CCCCHHH---HhhHH
Confidence            74     7788665   66666

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.07  E-value=0.00047  Score=68.75  Aligned_cols=152  Identities=10%  Similarity=-0.022  Sum_probs=110.8

Q ss_pred             hhHH-HHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhhhhhhhhhHHH
Q 013549           80 ESYS-QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----------YVEAIEKLQKVENFKNSILGVRVAA  148 (441)
Q Consensus        80 g~y~-eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~----------y~eA~e~~~ral~i~~~~lg~~~~a  148 (441)
                      |.|+ +|+.+++++|.+        .|...++.+.-+.++...|+          |.+++..+..++...+...    .+
T Consensus        43 ~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny----~a  110 (331)
T 3dss_A           43 GELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GT  110 (331)
T ss_dssp             TCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HH
T ss_pred             CCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH----HH
Confidence            4554 899999999964        34556778888888877776          6788888888877766542    37


Q ss_pred             HHHHHHHHHhcCC--cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCc
Q 013549          149 MEALAGLYLQLGQ--DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN-LESAESFFKGLQEEEGCT  225 (441)
Q Consensus       149 l~~La~l~~~~G~--~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~-y~eAe~l~~~aL~~~~~~  225 (441)
                      ++....+...+|+  +.++..++++++++-.+       +....     ...+.+....|+ ++++..++.+++..++..
T Consensus       111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-------Ny~AW-----~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N  178 (331)
T 3dss_A          111 WHHRCWLLSRLPEPNWARELELCARFLEADER-------NFHCW-----DYRRFVAAQAAVAPAEELAFTDSLITRNFSN  178 (331)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-------CHHHH-----HHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-------CHHHH-----HHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence            7888888888885  67788888777643211       11222     233555556788 699999999999977767


Q ss_pred             hHHHHHHHHHHHHc--------------cChHHHHHHHHHHHHH
Q 013549          226 GSAALSYGEYLHAT--------------RNFLLAKKFYQKVIEV  255 (441)
Q Consensus       226 ~~~a~~~a~~~~~q--------------G~y~eA~~ly~rAL~i  255 (441)
                      ..+-...+.++...              +.++++.+++.++|.+
T Consensus       179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~  222 (331)
T 3dss_A          179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  222 (331)
T ss_dssp             HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence            66666667666655              6799999999999988

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.01  E-value=4.7e-05  Score=81.17  Aligned_cols=178  Identities=9%  Similarity=0.043  Sum_probs=129.1

Q ss_pred             HHcCCh-HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC----------cchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          119 YESGNY-VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ----------DDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       119 ~~qG~y-~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~----------~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                      ...|+| ++|++.+.+++.+.+...    .+|+....+...+|+          +.++..++++++.+-    +   ...
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~----p---K~y  107 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----P---KSY  107 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC----T---TCH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC----C---CCH
Confidence            345655 577999999998887653    367777777777777          677777777775322    1   112


Q ss_pred             hhhHhHHHHHHHHHHHHcC--CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHhhcccCC
Q 013549          188 GAVNSRANAVKGLVELAHG--NLESAESFFKGLQEEEGCTGSAALSYGEYLHATR-NFLLAKKFYQKVIEVLAEQKDFSD  264 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~~qG--~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG-~y~eA~~ly~rAL~i~~~~~~~~~  264 (441)
                      ....     ..+.+....|  +|++|..++.++++.++....+...-+.++...| ++++|.+++.++|++   .     
T Consensus       108 ~aW~-----hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~-----  174 (567)
T 1dce_A          108 GTWH-----HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---N-----  174 (567)
T ss_dssp             HHHH-----HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---T-----
T ss_pred             HHHH-----HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---C-----
Confidence            2333     3355556778  6799999999999976666666666678888899 999999999999876   1     


Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 013549          265 MNTLGSCNMALEEVALAATFALGQLEAHM--------------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL  330 (441)
Q Consensus       265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~q--------------G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~  330 (441)
                         +.         ...+.++.+.++..+              ++|++|.+++.+|+.+     .   |.-..+.+.++.
T Consensus       175 ---p~---------n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-----~---P~~~saW~y~~~  234 (567)
T 1dce_A          175 ---FS---------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----D---PNDQSAWFYHRW  234 (567)
T ss_dssp             ---CC---------CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-----C---SSCSHHHHHHHH
T ss_pred             ---CC---------CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-----C---CCCccHHHHHHH
Confidence               11         124678899988886              6678888888888875     3   444567888889


Q ss_pred             HHHHhhchhh
Q 013549          331 MFRNKAMQEH  340 (441)
Q Consensus       331 ly~~qG~~ee  340 (441)
                      ++...+++++
T Consensus       235 ll~~~~~~~~  244 (567)
T 1dce_A          235 LLGRAEPHDV  244 (567)
T ss_dssp             HHSCCCCCSC
T ss_pred             HHhcCCCccc
Confidence            9999988766

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.94  E-value=3e-05  Score=61.13  Aligned_cols=60  Identities=15%  Similarity=0.144  Sum_probs=53.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHH-HHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV-VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~-~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      .++|..+..+|+|++|++.|++++.+        +|.... .+.++|.+|..+|++++|      ...|++++++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~   64 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKA------LNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhc
Confidence            57899999999999999999999986        455556 899999999999999987      8999999987

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.85  E-value=0.00025  Score=69.38  Aligned_cols=83  Identities=11%  Similarity=0.078  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhhhhccCC--chHHHHHHHHHHHHc-----cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHH
Q 013549          208 LESAESFFKGLQEEEGC--TGSAALSYGEYLHAT-----RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL  280 (441)
Q Consensus       208 y~eAe~l~~~aL~~~~~--~~~~a~~~a~~~~~q-----G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~  280 (441)
                      ..+|..+++|+++..+.  .+.+...+|.+|...     |+.++|+.+|+|||+|   ..+     .           .+
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~-----~-----------~i  239 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSA-----H-----------DP  239 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCT-----T-----------CS
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCC-----C-----------Cc
Confidence            58899999999996555  355677889888884     9999999999999999   221     1           02


Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 013549          281 AATFALGQLEAH-MGNFGDAEEILTRTLTK  309 (441)
Q Consensus       281 ~al~nLg~ly~~-qG~y~eAe~l~~rAL~i  309 (441)
                      .+...+|..|+. +|++++|+.++++||.+
T Consensus       240 d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          240 DHHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            345788998888 59999999999999984

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.82  E-value=0.00034  Score=76.17  Aligned_cols=206  Identities=11%  Similarity=0.020  Sum_probs=139.8

Q ss_pred             ChhhHHHHH-HHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh------h------
Q 013549           78 SDESYSQGM-LVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG------V------  144 (441)
Q Consensus        78 ~~g~y~eAl-~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg------~------  144 (441)
                      ..|+.++|. .+|++|+..-        |.........+.+....|++++|.++|++++........      +      
T Consensus       355 ~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~  426 (679)
T 4e6h_A          355 EKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI  426 (679)
T ss_dssp             HHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence            456677897 9999998633        222355678899999999999999999999875321110      0      


Q ss_pred             ------hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHc-CCHHHHHHHHHh
Q 013549          145 ------RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH-GNLESAESFFKG  217 (441)
Q Consensus       145 ------~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~q-G~y~eAe~l~~~  217 (441)
                            ....+-..+.+....|..+.|..++.++++......   +    .+  ..  -.+...... ++++.|..+|++
T Consensus       427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~---~----~l--yi--~~A~lE~~~~~d~e~Ar~ife~  495 (679)
T 4e6h_A          427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT---P----DI--YL--ENAYIEYHISKDTKTACKVLEL  495 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---T----HH--HH--HHHHHHHTTTSCCHHHHHHHHH
T ss_pred             hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---h----HH--HH--HHHHHHHHhCCCHHHHHHHHHH
Confidence                  012455556666677888888888888864311111   1    11  11  123334444 559999999999


Q ss_pred             hhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHH
Q 013549          218 LQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG  297 (441)
Q Consensus       218 aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~  297 (441)
                      +++..+..+.....|+.+....|+.+.|..+|+||+...   ..             ++. ...........-...|+.+
T Consensus       496 ~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~---~~-------------~~~-~~~lw~~~~~fE~~~G~~~  558 (679)
T 4e6h_A          496 GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI---SD-------------SHL-LKMIFQKVIFFESKVGSLN  558 (679)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS---SS-------------TTH-HHHHHHHHHHHHHHTCCSH
T ss_pred             HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc---CC-------------HHH-HHHHHHHHHHHHHHcCCHH
Confidence            999655566677889999999999999999999999751   10             000 1123456677778889999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549          298 DAEEILTRTLTKTEELFGSHHPKVGVV  324 (441)
Q Consensus       298 eAe~l~~rAL~i~e~~lG~~HP~va~~  324 (441)
                      .+..+++|++..+     |+.|.+...
T Consensus       559 ~~~~v~~R~~~~~-----P~~~~~~~f  580 (679)
T 4e6h_A          559 SVRTLEKRFFEKF-----PEVNKLEEF  580 (679)
T ss_dssp             HHHHHHHHHHHHS-----TTCCHHHHH
T ss_pred             HHHHHHHHHHHhC-----CCCcHHHHH
Confidence            9999999998766     345655544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.74  E-value=0.0023  Score=63.75  Aligned_cols=156  Identities=10%  Similarity=0.029  Sum_probs=102.5

Q ss_pred             HHHcCChH-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC----------cchhHHHHHHHHHHHHhcCCCcchh
Q 013549          118 LYESGNYV-EAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ----------DDTSSVVADKCLQLCEKHKPENYKT  186 (441)
Q Consensus       118 ~~~qG~y~-eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~----------~~~A~~l~~~~L~i~~~~~~~~~~~  186 (441)
                      ....|.|+ +|+.++.+++.+.+...    .+++.-..+...++.          +.++..+++.++.+    .   +..
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~y----taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----~---PKn  107 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----N---PKS  107 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----C---TTC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh----C---CCC
Confidence            34678887 79999999998887653    245554444443343          23444444444321    1   222


Q ss_pred             hhhhHhHHHHHHHHHHHHcC--CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHHhhcccC
Q 013549          187 YGAVNSRANAVKGLVELAHG--NLESAESFFKGLQEEEGCTGSAALSYGEYLHATRN-FLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       187 ~~~l~~~a~al~gl~~~~qG--~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~-y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                      ......|     +.+....|  .++++..++.+++..++....+-..-+.++...|+ ++++.+++.++|++   .    
T Consensus       108 y~aW~hR-----~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~----  175 (331)
T 3dss_A          108 YGTWHHR-----CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---N----  175 (331)
T ss_dssp             HHHHHHH-----HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---C----
T ss_pred             HHHHHHH-----HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---C----
Confidence            2333333     44444566  49999999999999766666666666778888898 59999999999987   1    


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHH
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQLEAHM--------------GNFGDAEEILTRTLTK  309 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~q--------------G~y~eAe~l~~rAL~i  309 (441)
                          +.         ...+.++.+.++...              +.|+++.+++.+++.+
T Consensus       176 ----p~---------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~  222 (331)
T 3dss_A          176 ----FS---------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  222 (331)
T ss_dssp             ----SC---------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             ----CC---------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence                11         124678888888877              4567777777777654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.73  E-value=0.0013  Score=69.04  Aligned_cols=191  Identities=10%  Similarity=-0.023  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchh--HHHHHHHHHHHH---hcCCCcc
Q 013549          110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTS--SVVADKCLQLCE---KHKPENY  184 (441)
Q Consensus       110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A--~~l~~~~L~i~~---~~~~~~~  184 (441)
                      +++++=..+.+.|++++|+++|++....   .+.+++.+++.|...|...+...++  ..-.+++.+++.   ..+ ..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~---Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G-~~P  103 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN---GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK-VVP  103 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-CCC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-CCC
Confidence            4566667788999999999999987542   2334566888888888665543221  111233333322   222 111


Q ss_pred             hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549          185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS  263 (441)
Q Consensus       185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~  263 (441)
                          +...+  +..-.++...|++++|..+|++... +-.+...+...+-..|...|++++|..+|++-.+-     +  
T Consensus       104 ----d~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----G--  170 (501)
T 4g26_A          104 ----NEATF--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-----E--  170 (501)
T ss_dssp             ----CHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T--
T ss_pred             ----CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-----C--
Confidence                11111  1122345689999999999999887 32333334455556778999999999999986532     2  


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549          264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA  336 (441)
Q Consensus       264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG  336 (441)
                          +.     |+   ..+++.|=..|...|++++|.+++++--   +...-   |+. .+++.|-..|...+
T Consensus       171 ----~~-----Pd---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr---~~g~~---ps~-~T~~~l~~~F~s~~  224 (501)
T 4g26_A          171 ----VV-----PE---EPELAALLKVSMDTKNADKVYKTLQRLR---DLVRQ---VSK-STFDMIEEWFKSEV  224 (501)
T ss_dssp             ----CC-----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHTSS---BCH-HHHHHHHHHHHSHH
T ss_pred             ----CC-----CC---HHHHHHHHHHHhhCCCHHHHHHHHHHHH---HhCCC---cCH-HHHHHHHHHHhcCc
Confidence                11     22   3467888889999999999999998853   32222   332 33444545555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.66  E-value=0.00021  Score=58.30  Aligned_cols=80  Identities=16%  Similarity=0.139  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP  362 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~  362 (441)
                      .+.||..+..+|+|++|...|++|+.....--. .-+....++.+||.+|..+|++++|      ..+|++++++    .
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A------~~~~~~al~l----~   76 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKA------LLLTKKLLEL----D   76 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH----C
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHH------HHHHHHHHhc----C
Confidence            469999999999999999999999988753311 1134567889999999999999887      8899999886    3


Q ss_pred             CCCcchHhhhccHH
Q 013549          363 LESEGVETKVDRTD  376 (441)
Q Consensus       363 ~~~~~~~~~l~nl~  376 (441)
                      |+|+.+   ++|+.
T Consensus        77 P~~~~~---~~n~~   87 (104)
T 2v5f_A           77 PEHQRA---NGNLK   87 (104)
T ss_dssp             TTCHHH---HHHHH
T ss_pred             CCCHHH---HhhHH
Confidence            566543   45544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.49  E-value=0.0011  Score=53.29  Aligned_cols=84  Identities=8%  Similarity=-0.026  Sum_probs=59.6

Q ss_pred             CCchHHHHHHHHHHHHccC---hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549          223 GCTGSAALSYGEYLHATRN---FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA  299 (441)
Q Consensus       223 ~~~~~~a~~~a~~~~~qG~---y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA  299 (441)
                      +..+.+...+|.++...++   .++|..++++||++   .               |.  .+.++..||.++..+|+|++|
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---d---------------p~--~~rA~~~lg~~~~~~g~y~~A   62 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---E---------------PY--NEAALSLIANDHFISFRFQEA   62 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---C---------------TT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---C---------------cC--CHHHHHHHHHHHHHcCCHHHH
Confidence            4455667778887765554   78999999999988   1               11  135678899999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 013549          300 EEILTRTLTKTEELFGSHHPKVGVVLTCLALM  331 (441)
Q Consensus       300 e~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l  331 (441)
                      ..+|+++|+.     .++.|.....-..++..
T Consensus        63 i~~w~~~l~~-----~p~~~~~~~i~~~I~~A   89 (93)
T 3bee_A           63 IDTWVLLLDS-----NDPNLDRVTIIESINKA   89 (93)
T ss_dssp             HHHHHHHHTC-----CCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhh-----CCCCccHHHHHHHHHHH
Confidence            9999988763     33356665555555443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.38  E-value=0.0032  Score=65.91  Aligned_cols=156  Identities=9%  Similarity=-0.048  Sum_probs=107.3

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHhhhhhhhhhHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN---------YVEAIEKLQKVENFKNSILGVRVAAM  149 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~---------y~eA~e~~~ral~i~~~~lg~~~~al  149 (441)
                      .|+.++|+.+|++.....   ..++    ..+++.|=..+...|+         .++|.++|++....   .+.++..++
T Consensus        39 ~G~~~~A~~lf~~M~~~G---v~pd----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---G~~Pd~~ty  108 (501)
T 4g26_A           39 KGDVLEALRLYDEARRNG---VQLS----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---KVVPNEATF  108 (501)
T ss_dssp             SCCHHHHHHHHHHHHHHT---CCCC----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---TCCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHcC---CCCC----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---CCCCCHHHH
Confidence            589999999999988632   2122    3356666666655444         68888888876432   233456789


Q ss_pred             HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHH
Q 013549          150 EALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSA  228 (441)
Q Consensus       150 ~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~  228 (441)
                      +.|...|...|+.++|..++++..    ..+ ..+    +...+  +..-..+...|+.++|..+|++... +-.+...+
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~----~~g-~~P----d~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t  177 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMK----AFG-IQP----RLRSY--GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE  177 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH----HTT-CCC----CHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH----HcC-CCC----cccee--hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence            999999999999999998887653    222 111    11111  1122345689999999999999988 33334445


Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      ...+-..|...|++++|..++++--+.
T Consensus       178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          178 LAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            566677888999999999999986543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.34  E-value=0.019  Score=58.38  Aligned_cols=184  Identities=16%  Similarity=0.155  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR-VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY  187 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~-~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~  187 (441)
                      .++..||.+|.++|++++-.+++..........-... .....+|...+......  ....++-|++..+-...+   ..
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~--~~~~~~~~~~~~~~a~~~---~r   94 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAG--TGIEVQLCKDCIEWAKQE---KR   94 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHH---HH
Confidence            4578899999999999999999987654443321111 23445566555433322  122234444333211100   00


Q ss_pred             hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc----cCCc--hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEE----EGCT--GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~----~~~~--~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      .-+..+...-++-.|+..|+|.+|.+++.+.+..    +...  ..+...-..+|+.+|++.++...|.+|..+.-   .
T Consensus        95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~---a  171 (394)
T 3txn_A           95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN---A  171 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc---c
Confidence            1111112223566778999999999999999881    1111  12222335689999999999999999999841   1


Q ss_pred             cCCCCCccccccchhHHHHHHH-HHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Q 013549          262 FSDMNTLGSCNMALEEVALAAT-FALGQLEA-HMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al-~nLg~ly~-~qG~y~eAe~l~~rAL~i~e  311 (441)
                           ..  +  +|.  ..+.+ ..-|.++. ..++|.+|-.+|-+|+.-|.
T Consensus       172 -----i~--~--~p~--i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          172 -----IY--C--PPK--VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             -----SC--C--CHH--HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             -----CC--C--CHH--HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence                 00  1  121  22333 45677888 89999999999999986665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.32  E-value=0.0016  Score=63.73  Aligned_cols=62  Identities=16%  Similarity=0.146  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHc-----CCHHHHHHHHHhhhhccCCc-hHHHHHHHHHHHH-ccChHHHHHHHHHHHHH
Q 013549          194 ANAVKGLVELAH-----GNLESAESFFKGLQEEEGCT-GSAALSYGEYLHA-TRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       194 a~al~gl~~~~q-----G~y~eAe~l~~~aL~~~~~~-~~~a~~~a~~~~~-qG~y~eA~~ly~rAL~i  255 (441)
                      +...+|.+|...     |+.++|+.+|+|+|...+.. ..+-..||..+.. +|++++|..++++||.+
T Consensus       201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            444568888663     99999999999999955433 5677888998887 59999999999999987

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.25  E-value=0.01  Score=59.81  Aligned_cols=133  Identities=11%  Similarity=0.019  Sum_probs=84.9

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHhhhhccCCchHHHHHHHHH---HHHcc-ChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549          196 AVKGLVELAHGN---LESAESFFKGLQEEEGCTGSAALSYGEY---LHATR-NFLLAKKFYQKVIEVLAEQKDFSDMNTL  268 (441)
Q Consensus       196 al~gl~~~~qG~---y~eAe~l~~~aL~~~~~~~~~a~~~a~~---~~~qG-~y~eA~~ly~rAL~i~~~~~~~~~~~~l  268 (441)
                      .+.|..++.++.   +.+|..+|+++++.+|....+...++.+   ....+ .-.....-..+++........       
T Consensus       200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~-------  272 (372)
T 3ly7_A          200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE-------  272 (372)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc-------
Confidence            355666666554   5889999999999666554332222211   22222 222222223344442111111       


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHH
Q 013549          269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE  348 (441)
Q Consensus       269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae  348 (441)
                      +     |.  ...++.-+|.++..+|++++|...++||+.+.        |+ ...+.-+|.++...|++++|      .
T Consensus       273 ~-----~~--~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA------~  330 (372)
T 3ly7_A          273 L-----NN--LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREA------A  330 (372)
T ss_dssp             G-----TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHH------H
T ss_pred             C-----Cc--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHH------H
Confidence            1     11  12345677777788899999999999999994        44 45778899999999999987      8


Q ss_pred             HHHHHHHHH
Q 013549          349 GLYRRALEF  357 (441)
Q Consensus       349 ~ly~rAL~i  357 (441)
                      ..|.+|+.+
T Consensus       331 e~~~~AlrL  339 (372)
T 3ly7_A          331 DAYLTAFNL  339 (372)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999877

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.23  E-value=0.0091  Score=60.26  Aligned_cols=136  Identities=13%  Similarity=-0.020  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHH-HcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH---hcCCcch-hHHHHHHHHHHHHhcCCCc
Q 013549          109 ISLLAMSTLLY-ESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL---QLGQDDT-SSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       109 ~~l~nLa~l~~-~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~---~~G~~~~-A~~l~~~~L~i~~~~~~~~  183 (441)
                      ..+-.++.++. +...+.+|+++|++|+++.+.. +.   ++-.++.+|.   ..+.... ...-..+++....... . 
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~-a~---A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~-~-  272 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF-TY---ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP-E-  272 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC-HH---HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-G-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-HH---HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc-c-
Confidence            33444443332 2344689999999999988763 11   1111222221   1121111 1111122222111111 0 


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                          .....+.....+++.+.+|++++|...+++++...+. ..+...+|.++...|++++|++.|++|+.+
T Consensus       273 ----~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          273 ----LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             ----GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence                0111222333466667899999999999999996542 333456688999999999999999999998

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.13  E-value=0.038  Score=57.42  Aligned_cols=225  Identities=11%  Similarity=0.009  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013549           82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ  161 (441)
Q Consensus        82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~  161 (441)
                      ..+...+|+++|...        |.........+..+..+|+.++|...|++++.. +...-.    +..    |...-+
T Consensus       195 ~~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l----~~~----y~~~~e  257 (493)
T 2uy1_A          195 ESRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL----SLY----YGLVMD  257 (493)
T ss_dssp             HHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH----HHH----HHHHTT
T ss_pred             HHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH----HHH----HHhhcc
Confidence            456788999999743        233667888899999999999999999999988 654211    111    111111


Q ss_pred             cchhHHHHHHHHHHHHhcCCCcch--hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549          162 DDTSSVVADKCLQLCEKHKPENYK--TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT  239 (441)
Q Consensus       162 ~~~A~~l~~~~L~i~~~~~~~~~~--~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q  239 (441)
                      ..   ..+++..+...........  ..... ......-...+..+|+.+.|..+|+++ ...+....+...+|.+-...
T Consensus       258 ~~---~~~~~l~~~~~~~~~~~~~~~~~~~~-~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~  332 (493)
T 2uy1_A          258 EE---AVYGDLKRKYSMGEAESAEKVFSKEL-DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA  332 (493)
T ss_dssp             CT---HHHHHHHHHTC----------CHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH
T ss_pred             hh---HHHHHHHHHHHhhccchhhhhccccc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH
Confidence            11   1233322221000000000  00000 000000011122477899999999999 53333444555567666666


Q ss_pred             c-ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549          240 R-NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH  318 (441)
Q Consensus       240 G-~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H  318 (441)
                      | +++.|..+|++++..+   ..     .       |+     .....+.....+|+.+.|..+|+++         ..|
T Consensus       333 ~~d~~~ar~ife~al~~~---~~-----~-------~~-----~~~~yid~e~~~~~~~~aR~l~er~---------~k~  383 (493)
T 2uy1_A          333 TGSRATPYNIFSSGLLKH---PD-----S-------TL-----LKEEFFLFLLRIGDEENARALFKRL---------EKT  383 (493)
T ss_dssp             HCCSHHHHHHHHHHHHHC---TT-----C-------HH-----HHHHHHHHHHHHTCHHHHHHHHHHS---------CCB
T ss_pred             CCChHHHHHHHHHHHHHC---CC-----C-------HH-----HHHHHHHHHHHcCCHHHHHHHHHHH---------HHH
Confidence            6 5999999999999862   10     0       11     1234566778899999999999997         234


Q ss_pred             chHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 013549          319 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESE  366 (441)
Q Consensus       319 P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~  366 (441)
                      ..   ........=...|..+.+      ..+|+|+++-++....++|
T Consensus       384 ~~---lw~~~~~fE~~~G~~~~~------r~v~~~~~~~~~~~~~~~~  422 (493)
T 2uy1_A          384 SR---MWDSMIEYEFMVGSMELF------RELVDQKMDAIKADAILPP  422 (493)
T ss_dssp             HH---HHHHHHHHHHHHSCHHHH------HHHHHHHHHHHHTTCCBCC
T ss_pred             HH---HHHHHHHHHHHCCCHHHH------HHHHHHHHHHhcccccCCc
Confidence            33   333333455556876654      7889999987763333343

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.09  E-value=0.0025  Score=57.20  Aligned_cols=98  Identities=10%  Similarity=-0.001  Sum_probs=70.5

Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      ...+...|.|+-|+.++..++.+-.   .  ++..+.     | +....++..+|++++.+|+|.+|+..|++||...+.
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~---~--~~~~~s-----p-~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~   95 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSN---N--NPELFS-----P-PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA   95 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH---H--STTSSC-----H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhc---C--Cccccc-----H-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            4456788999999999999999832   1  122333     2 235668899999999999999999999999999985


Q ss_pred             hhCCCC-----------------chHHHHHHHHHHHHHHhhchhhh
Q 013549          313 LFGSHH-----------------PKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       313 ~lG~~H-----------------P~va~~l~nLa~ly~~qG~~eeA  341 (441)
                      +.-..-                 +.-...-..+|..|..++++++|
T Consensus        96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             C--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            431111                 11224556788899888886654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.99  E-value=0.1  Score=53.09  Aligned_cols=180  Identities=16%  Similarity=0.129  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHH---HcCCHHHHHHHHHhhhh---c
Q 013549          148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVEL---AHGNLESAESFFKGLQE---E  221 (441)
Q Consensus       148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~---~qG~y~eAe~l~~~aL~---~  221 (441)
                      +...|+.+|..+|++++-..+.......+..-.         -...++.+..++..   .-|..+.=..+...++.   .
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~   91 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS---------KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ   91 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---------HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---------hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            567889999999998776655544322221111         11122334444433   24566666777777776   2


Q ss_pred             cCCc-hH--HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549          222 EGCT-GS--AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD  298 (441)
Q Consensus       222 ~~~~-~~--~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e  298 (441)
                      ++.. -.  +=..++.+|..+|+|.+|..++.+.+.-.   +.. +..          ...+..+..-.++|..+|++.+
T Consensus        92 ~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~---~~~-dd~----------~~llev~lle~~~~~~~~n~~k  157 (394)
T 3txn_A           92 EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLREL---KKL-DDK----------NLLVEVQLLESKTYHALSNLPK  157 (394)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTS-SCT----------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hcc-ccc----------hhHHHHHHHHHHHHHHhccHHH
Confidence            2222 12  22478999999999999999999988763   221 111          1123445667889999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCchHHHHHHHH-HHHHH-HhhchhhhhhhHHHHHHHHHHHHHh
Q 013549          299 AEEILTRTLTKTEELFGSHHPKVGVVLTCL-ALMFR-NKAMQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nL-a~ly~-~qG~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                      +..+|++|..+...+  .-||.+-..+... |.++. .+++|.+|      -..|-.+++-+
T Consensus       158 ~k~~l~~a~~~~~ai--~~~p~i~a~i~~~~Gi~~l~~~rdyk~A------~~~F~eaf~~f  211 (394)
T 3txn_A          158 ARAALTSARTTANAI--YCPPKVQGALDLQSGILHAADERDFKTA------FSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTSCHHHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccC--CCCHHHHHHHHHHhhHHHHHhccCHHHH------HHHHHHHHhcc
Confidence            999999999998766  3889876555544 55555 69999987      34444455444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.94  E-value=0.001  Score=53.51  Aligned_cols=72  Identities=18%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      +.+.-+..||..+.... .....++|..+++++|.+        .|.-.+++..+|..++.+|+|++|+..++++++..+
T Consensus         4 ~~~~~~~~~a~al~~~~-~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            4 VTATQLAAKATTLYYLH-KQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCHHHHHHHHHHHHHTT-TTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            33444555666553211 222378999999999974        445577889999999999999999999999987766


Q ss_pred             h
Q 013549          140 S  140 (441)
Q Consensus       140 ~  140 (441)
                      .
T Consensus        75 ~   75 (93)
T 3bee_A           75 P   75 (93)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.82  E-value=0.0068  Score=53.63  Aligned_cols=93  Identities=13%  Similarity=0.151  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549          207 NLESAESFFKGLQEEEGCTGSAALSYGEYLHATR---NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT  283 (441)
Q Consensus       207 ~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG---~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al  283 (441)
                      ....++.-|.+.+...+....+-++||..+....   ++.+++.+++..+..   . .             |+. .-.++
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~---~-~-------------p~~-~rd~l   74 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK---G-S-------------KEE-QRDYV   74 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---S-C-------------HHH-HHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---C-C-------------ccc-hHHHH
Confidence            3456777787777755566778899998888765   778999999998876   1 0             111 23578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549          284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG  322 (441)
Q Consensus       284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va  322 (441)
                      ++||..|..+|+|++|..+++++|++.     |+|+...
T Consensus        75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ie-----P~n~QA~  108 (152)
T 1pc2_A           75 FYLAVGNYRLKEYEKALKYVRGLLQTE-----PQNNQAK  108 (152)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHC-----TTCHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcC-----CCCHHHH
Confidence            999999999999999999999999974     5555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.5  Score=48.45  Aligned_cols=214  Identities=12%  Similarity=0.073  Sum_probs=122.1

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHH-HHHHHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVA-AMEALAGLYL  157 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~-al~~La~l~~  157 (441)
                      .|++++|+..+- +|+-. ...+.+-+++.+++..+..++...|+|+...+++.- +.-....+...+. ....+.....
T Consensus        29 ~~~~~~a~e~ll-~lEK~-~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~-Lskkr~qlk~ai~~~V~~~~~~l~  105 (445)
T 4b4t_P           29 QNDCNSALDQLL-VLEKK-TRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTL-LSKKHGQLKLSIQYMIQKVMEYLK  105 (445)
T ss_dssp             HHHHHHHHHHHH-HHHHH-HSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHH-HHTTTTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH-HHHHH-hhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHh
Confidence            467888887652 22222 234578889999999999999999999998876643 2222111111111 1111111111


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCc-chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCc-----hHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPEN-YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCT-----GSAAL  230 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~-~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~-----~~~a~  230 (441)
                      .....+  ......++.+........ +-  +..-.+....++-++..+|+|.+|..+++.... .....     ....+
T Consensus       106 ~~~~~d--~~~~~~~i~~l~~vte~kifl--E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l  181 (445)
T 4b4t_P          106 SSKSLD--LNTRISVIETIRVVTENKIFV--EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL  181 (445)
T ss_dssp             HHCTTH--HHHHHHHHHCCSSSSSCCCCC--CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred             cCCchh--HHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            111111  111112222221111100 10  000112222345667789999999999999876 21111     11223


Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      --..+|...++|.+|..++.++..-...  .   .   .     +....+....-.|.++.+.++|.+|-.+|..++..+
T Consensus       182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~--~---~---~-----~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          182 EQMELSILKGDYSQATVLSRKILKKTFK--N---P---K-----YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHH--S---S---C-----CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhcc--c---C---C-----cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            3366888999999999999998654211  1   0   0     122344455678999999999999999999998865


Q ss_pred             HH
Q 013549          311 EE  312 (441)
Q Consensus       311 e~  312 (441)
                      ..
T Consensus       249 ~~  250 (445)
T 4b4t_P          249 AI  250 (445)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.24  E-value=0.011  Score=52.34  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCch-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~-~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      ......+||..+.++. +.+.+++|+.+++..+...       .| ..-.++.+||..|+..|+|++|..++++++++.+
T Consensus        31 ~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             CHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            4456678888886653 6678899999999999732       34 5678999999999999999999999999988887


Q ss_pred             hh
Q 013549          140 SI  141 (441)
Q Consensus       140 ~~  141 (441)
                      ..
T Consensus       103 ~n  104 (152)
T 1pc2_A          103 QN  104 (152)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.86  E-value=0.075  Score=56.98  Aligned_cols=117  Identities=19%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKT-----EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~-----e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      -.+||..+..+|+++.|+.+|.++-+..     ....|  .++   -+..++.+...+|+++.|..+....+.+++|+++
T Consensus       684 W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~--~~~---~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~  758 (814)
T 3mkq_A          684 WRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN--NKE---GLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDL  758 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT--CHH---HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC--CHH---HHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHH
Confidence            4699999999999999999999963222     11122  111   2334455555566655541111111222222222


Q ss_pred             hhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhch--hh--HHHHHHHHHHHHHhccChhHHHHhcccC
Q 013549          358 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNR--KD--EGERMKRWAEAAWRNRRVSLAEALNFSE  425 (441)
Q Consensus       358 ~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r--~~--eae~~~~~a~~~~~~~r~~~~~~l~~~~  425 (441)
                                           |...+++++|+.+-..-  ..  ..+-+.+|+..+-..++...+++|..-|
T Consensus       759 ---------------------~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~  809 (814)
T 3mkq_A          759 ---------------------LIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSERVCGAE  809 (814)
T ss_dssp             ---------------------HHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGG
T ss_pred             ---------------------HHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHHhhCCcc
Confidence                                 33445666665543211  11  2244456887777778877888887443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.78  E-value=0.41  Score=49.55  Aligned_cols=215  Identities=11%  Similarity=0.006  Sum_probs=110.5

Q ss_pred             cChhh-HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 013549           77 KSDES-YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGL  155 (441)
Q Consensus        77 ~~~g~-y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l  155 (441)
                      +.+|. .+.|..+|++++.....                       |+++.+..+|+|++...++.     ..|......
T Consensus         5 ~~~~~~i~~aR~vyer~l~~~P~-----------------------~~~e~~~~iferal~~~ps~-----~LW~~Y~~f   56 (493)
T 2uy1_A            5 EKMGVELSSPSAIMEHARRLYMS-----------------------KDYRSLESLFGRCLKKSYNL-----DLWMLYIEY   56 (493)
T ss_dssp             -------CCHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHSTTCCCH-----HHHHHHHHH
T ss_pred             HHcCcchHHHHHHHHHHHHHCCC-----------------------CCHHHHHHHHHHHhccCCCH-----HHHHHHHHH
Confidence            45674 88899999999987633                       88999999999998765532     244444443


Q ss_pred             HHhcCC-cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-chHHHHHHH
Q 013549          156 YLQLGQ-DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC-TGSAALSYG  233 (441)
Q Consensus       156 ~~~~G~-~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~-~~~~a~~~a  233 (441)
                      ....+. .+.....|+.++...+.....    ..-...+..-+.. ....+|+.+.+..+|+++|..... ....-..|.
T Consensus        57 ~~~~~~~~~~i~~~fe~al~~vg~d~~s----~~iW~~Yi~f~~~-~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~  131 (493)
T 2uy1_A           57 VRKVSQKKFKLYEVYEFTLGQFENYWDS----YGLYKEYIEEEGK-IEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFE  131 (493)
T ss_dssp             HHHHC----CTHHHHHHHHHHSTTCTTC----HHHHHHHHHHTSS-CSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHcCCCccc----HHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHH
Confidence            334442 344566677776655422210    0111111000000 001367899999999999983211 111111221


Q ss_pred             H-------------HHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc--CC---
Q 013549          234 E-------------YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM--GN---  295 (441)
Q Consensus       234 ~-------------~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q--G~---  295 (441)
                      .             +-...+.|..|...|+.+..+...         ..          +.........-...  |-   
T Consensus       132 ~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~---------~s----------~~~W~~y~~~E~~~~~~~~~~  192 (493)
T 2uy1_A          132 NFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG---------WS----------VKNAARLIDLEMENGMKLGGR  192 (493)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------CS----------HHHHHHHHHHHHTCTTCCCHH
T ss_pred             HHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh---------cc----------HHHHHHHHHHHhcCCccCcch
Confidence            1             112234556666666666655211         00          01111222221111  11   


Q ss_pred             --HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          296 --FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       296 --y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                        .++...+|++||...     +..   .....+.+..+..+|+.++|      ...|+||+..
T Consensus       193 ~~~~Rv~~~ye~al~~~-----p~~---~~lW~~ya~~~~~~~~~~~a------r~i~erAi~~  242 (493)
T 2uy1_A          193 PHESRMHFIHNYILDSF-----YYA---EEVYFFYSEYLIGIGQKEKA------KKVVERGIEM  242 (493)
T ss_dssp             HHHHHHHHHHHHHHHHT-----TTC---HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHHcCCHHHH------HHHHHHHHhC
Confidence              334556666666432     333   44455567788889988876      7899999877

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.76  E-value=0.18  Score=54.03  Aligned_cols=163  Identities=15%  Similarity=0.077  Sum_probs=88.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhH
Q 013549          112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVN  191 (441)
Q Consensus       112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~  191 (441)
                      ..+...+...|.+++|++..+....               -..+..+.|+.++|...++       ....          
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~~---------------~f~~~l~~~~~~~A~~~~~-------~~~~----------  680 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQDQ---------------KFELALKVGQLTLARDLLT-------DESA----------  680 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHHH---------------HHHHHHHHTCHHHHHHHHT-------TCCC----------
T ss_pred             HHHHHHHHhCCChHHheecCCCcch---------------heehhhhcCCHHHHHHHHH-------hhCc----------
Confidence            7778888999999999876643210               0122345688766655432       1111          


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549          192 SRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC  271 (441)
Q Consensus       192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~  271 (441)
                      ......++.+++.+|+++.|+.+|.++-+-.        .+..+|...|+.+....+    .++... .+          
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~~----~~~a~~-~~----------  737 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLE--------SLFLLHSSFNNKEGLVTL----AKDAET-TG----------  737 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH--------HHHHHHHHTTCHHHHHHH----HHHHHH-TT----------
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHccChh--------hhHHHHHHcCCHHHHHHH----HHHHHH-cC----------
Confidence            0111234666778999999999999875411        122233445555443222    222111 11          


Q ss_pred             ccchhHHHHHHHHHHH-HHHHHcCCHHHHHHHHHH------HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          272 NMALEEVALAATFALG-QLEAHMGNFGDAEEILTR------TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       272 ~~~~~~~~~~al~nLg-~ly~~qG~y~eAe~l~~r------AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                                 .++.| .+|..+|++++|+++|.+      |+.+.++ +|+.+..+...+...+.-...+|+++.|
T Consensus       738 -----------~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~-~~~~~~~i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          738 -----------KFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGST-YGLGDNEVNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             -----------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             -----------chHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence                       01222 245556677777666654      3333333 5554444667777777766777765433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.72  E-value=0.19  Score=44.92  Aligned_cols=103  Identities=14%  Similarity=-0.013  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                      +..-..-+.+.|.|+.|+.+...++.+.+.--..--|.. +.++..+|.++..+|+|..|      +..|++||.+.+..
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA------~~~y~qALq~~k~l   96 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNA------VSKYTMALQQKKAL   96 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHH------HHHHHHHHHHHHHH
Confidence            455566778899999999999999999765222223443 47899999999999998876      99999999998753


Q ss_pred             CCCCcch-------------------HhhhccHHHHHHHhccHHHHHHHh
Q 013549          362 PLESEGV-------------------ETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       362 ~~~~~~~-------------------~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                      . .++..                   ...-..++.++...+++.+|+..-
T Consensus        97 ~-k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L  145 (167)
T 3ffl_A           97 S-KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL  145 (167)
T ss_dssp             ---------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             h-cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            2 22110                   011125778888888888888764

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.06  Score=55.03  Aligned_cols=109  Identities=16%  Similarity=0.114  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcch
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK  185 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~  185 (441)
                      .+..++..+|..|.+.|+|++|.+.|.++...+.. .+..+..+-.+..++...+++..+..+..++-.+......  | 
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d--~-  204 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD--W-  204 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC--T-
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC--H-
Confidence            35677889999999999999999999998776654 3545556667788888899999999999998766655432  2 


Q ss_pred             hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 013549          186 TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE  221 (441)
Q Consensus       186 ~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~  221 (441)
                         ....+.+...|++++..++|.+|-.+|..+..+
T Consensus       205 ---~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          205 ---ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             ---HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence               233455566788889999999999999998874

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.14  E-value=1.1  Score=45.44  Aligned_cols=105  Identities=14%  Similarity=0.057  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      .+...+|..|...|++++|...|.++.+-   ...      .+  +      .+....++-.++...++|..+..++.+|
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~---~~~------~~--~------kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSK---AIS------TG--A------KIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHH---HTC------CC--S------HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCC------hH--H------HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34567888999999999999999997765   221      11  1      2345567777888899999999999998


Q ss_pred             HHHHHHhhCCCCchHH-HHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          307 LTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       307 L~i~e~~lG~~HP~va-~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      ..+.++   ..||... ..-..-|.++...++|.+|      -.+|..++..
T Consensus       195 ~~~~~~---~~d~~~~~~lk~~~gl~~l~~r~f~~A------a~~f~e~~~t  237 (429)
T 4b4t_R          195 NSMIEK---GGDWERRNRYKTYYGIHCLAVRNFKEA------AKLLVDSLAT  237 (429)
T ss_dssp             HHHHTT---CCCTHHHHHHHHHHHHGGGGTSCHHHH------HHHHHHHHHH
T ss_pred             HHhhhc---CCCHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHhcc
Confidence            776654   3556654 3444556667777887776      4455555444

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=90.68  E-value=2.1  Score=33.78  Aligned_cols=61  Identities=10%  Similarity=0.031  Sum_probs=42.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHH
Q 013549          272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~l-G~~HP~va~~l~nLa~ly  332 (441)
                      +|.|.......+..-|.-.-..|+|++|..+|.+|++.+...+ ....|..-..+..-..-|
T Consensus         8 ~~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eY   69 (86)
T 4a5x_A            8 HMDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKY   69 (86)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            3445443444566778888899999999999999999999886 455666655555444444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=90.22  E-value=1.2  Score=37.86  Aligned_cols=72  Identities=14%  Similarity=0.214  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCch-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS  140 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~-~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~  140 (441)
                      ....-+||..+-++. ....-.+++.+++..+..       +.| ..=.++..||.-+++.|+|++|..+.+..|.+.+.
T Consensus        35 ~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~  106 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            345567877776553 555677899999887752       224 56778999999999999999999999988887764


Q ss_pred             h
Q 013549          141 I  141 (441)
Q Consensus       141 ~  141 (441)
                      .
T Consensus       107 n  107 (126)
T 1nzn_A          107 N  107 (126)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.65  E-value=3.6  Score=41.97  Aligned_cols=110  Identities=13%  Similarity=0.120  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg--~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      ..++.-..|+.+|.++|+|.+|...++....-......  ..+...--...+|...+++..|..+..++........+  
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~--  212 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK--  212 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC--
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC--
Confidence            36888899999999999999999999886422111100  01223334567788999999999988887543333221  


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 013549          184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE  220 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~  220 (441)
                         ...+...-..+.|.++...++|.+|-.+|..+..
T Consensus       213 ---~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          213 ---YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence               1234444445678888899999999999999887

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.50  E-value=3  Score=41.69  Aligned_cols=128  Identities=9%  Similarity=-0.037  Sum_probs=84.0

Q ss_pred             CCCccccCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCc---h-----------hHHHHHHH
Q 013549           48 GNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAE---S-----------WRGISLLA  113 (441)
Q Consensus        48 ~~~~~~~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h---~-----------~~a~~l~n  113 (441)
                      +.|-++..+...-.+..+..+...- +.....|+..+|...+++||..+...+=++-   +           ....++..
T Consensus        98 ~~GY~l~~~~~~~D~~~f~~l~~~~-~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~  176 (388)
T 2ff4_A           98 PPGYRLSIPDNTCDLGRFVAEKTAG-VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTA  176 (388)
T ss_dssp             SSEEEECCCGGGBHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCccchHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            4455554332223344444433331 2111346788999999999999855432222   1           23356667


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Q 013549          114 MSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK  180 (441)
Q Consensus       114 La~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~  180 (441)
                      ++..+...|++.+|+..+++.+...+-  .  -..+..|+.++...|+..+|...|+++-+.+....
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~--~--E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL  239 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFEHPY--R--EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL  239 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT--C--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            788889999999999999988665432  1  12455677888899999999999999988765554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=88.95  E-value=1.8  Score=36.77  Aligned_cols=88  Identities=16%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHH---HHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH
Q 013549          205 HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLL---AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA  281 (441)
Q Consensus       205 qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~e---A~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~  281 (441)
                      ......++.-|.+.+........+-++||..+-.-.+-.+   ++.+++..+..         .        .|+. .-.
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~---------~--------~p~~-~Rd   75 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---------G--------SKEE-QRD   75 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---------S--------CHHH-HHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---------C--------Ccch-HHH
Confidence            3344556677777776444566778888877665544433   44444442221         0        0211 235


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      .+..||..+..+|+|++|..+....|.+-
T Consensus        76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           76 YVFYLAVGNYRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            78899999999999999999999999873

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=88.71  E-value=3.9  Score=46.37  Aligned_cols=109  Identities=13%  Similarity=-0.063  Sum_probs=78.2

Q ss_pred             CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549          102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP  181 (441)
Q Consensus       102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~  181 (441)
                      ..+...-.+++.|=..|+..|+.++|.+++.+...........++.++|.|..-|...|+.++|..++++..    ..+ 
T Consensus       121 ~~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G-  195 (1134)
T 3spa_A          121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK----DAG-  195 (1134)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTT-
T ss_pred             hHHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcC-
Confidence            356677789999999999999999999999876555444445567799999999999999999998887662    222 


Q ss_pred             CcchhhhhhHhHHHHHHHHHHHHcCCH-HHHHHHHHhhhhc
Q 013549          182 ENYKTYGAVNSRANAVKGLVELAHGNL-ESAESFFKGLQEE  221 (441)
Q Consensus       182 ~~~~~~~~l~~~a~al~gl~~~~qG~y-~eAe~l~~~aL~~  221 (441)
                      ..+    ++..+...+.+  +...|+. ++|..+|++....
T Consensus       196 ~~P----DvvTYntLI~g--lcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          196 LTP----DLLSYAAALQC--MGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             CCC----CHHHHHHHHHH--HHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCC----cHHHHHHHHHH--HHhCCCcHHHHHHHHHHHHHc
Confidence            111    22222222333  3467874 7899999998884

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.86  E-value=0.79  Score=47.86  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      ++..||.+.+....++.|+.+|.+|+.+        .|..+..+|.||.++..+|+.-+|      .-.|-|+|..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a------~y~y~rsl~~  215 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTT------IFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHH------HHHHHHHHSS
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHH------HHHHHHHHhc
Confidence            5779999999999999999999999987        599999999999999999987665      6777777653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=87.67  E-value=2.1  Score=36.76  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=58.8

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCch-hHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVE  135 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~-~~a~~l~nLa~l~~~qG~y~eA~e~~~ral  135 (441)
                      .+|+. .+.-|||..+-++. ......+++.+++..+..        +| ..=.++.-||.-+++.|+|++|....+..|
T Consensus        36 ~~vs~-qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL  105 (134)
T 3o48_A           36 PTATI-QSRFNYAWGLIKST-DVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  105 (134)
T ss_dssp             GGSCH-HHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCh-hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            45555 45567887776663 666788999999998862        23 467899999999999999999999999988


Q ss_pred             Hhhhhh
Q 013549          136 NFKNSI  141 (441)
Q Consensus       136 ~i~~~~  141 (441)
                      .+.+..
T Consensus       106 ~~eP~N  111 (134)
T 3o48_A          106 EHERNN  111 (134)
T ss_dssp             TTCTTC
T ss_pred             hhCCCC
Confidence            877653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.36  E-value=8  Score=38.51  Aligned_cols=96  Identities=15%  Similarity=-0.085  Sum_probs=70.5

Q ss_pred             HHcCCHHHHHHHHHhhhh---c-----cCCc--------------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549          203 LAHGNLESAESFFKGLQE---E-----EGCT--------------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK  260 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~---~-----~~~~--------------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~  260 (441)
                      ...|+.++|...+++++.   +     ....              ..+...++..+...|++.+|....++++++.    
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~----  201 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH----  201 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence            357899999999999988   1     1000              0122345667788999999999999998771    


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549          261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH  318 (441)
Q Consensus       261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H  318 (441)
                            .+      .+    ....-|=.+|...|+..+|...|+++-....+-||-+=
T Consensus       202 ------P~------~E----~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P  243 (388)
T 2ff4_A          202 ------PY------RE----PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  243 (388)
T ss_dssp             ------TT------CH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ------CC------CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence                  11      11    13456777889999999999999999999999999653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.18  E-value=3.3  Score=37.15  Aligned_cols=124  Identities=15%  Similarity=0.096  Sum_probs=77.1

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .|+++.|..+.++.             +.-.....||...-.+|+++=|+..|+++-+            +..|.-+|..
T Consensus        18 lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~   72 (177)
T 3mkq_B           18 YGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLV   72 (177)
T ss_dssp             TTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHH
Confidence            36788888886543             1234688999999999999999999998622            2334455666


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA  238 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~  238 (441)
                      .|+-+.-.    +..++.+..+.        .     ++....++.+|+++++..+|.++=.    .+ -+.-+|   ..
T Consensus        73 tg~~e~L~----kla~iA~~~g~--------~-----n~af~~~l~lGdv~~~i~lL~~~~r----~~-eA~~~A---~t  127 (177)
T 3mkq_B           73 TGDVNKLS----KMQNIAQTRED--------F-----GSMLLNTFYNNSTKERSSIFAEGGS----LP-LAYAVA---KA  127 (177)
T ss_dssp             HTCHHHHH----HHHHHHHHTTC--------H-----HHHHHHHHHHTCHHHHHHHHHHTTC----HH-HHHHHH---HH
T ss_pred             hCCHHHHH----HHHHHHHHCcc--------H-----HHHHHHHHHcCCHHHHHHHHHHCCC----hH-HHHHHH---HH
Confidence            67654333    33333333331        1     1334556789999999999976532    12 122222   34


Q ss_pred             ccChHHHHHHHHHH
Q 013549          239 TRNFLLAKKFYQKV  252 (441)
Q Consensus       239 qG~y~eA~~ly~rA  252 (441)
                      .|-.+.|.++.+.+
T Consensus       128 ~g~~~~a~~~~~~~  141 (177)
T 3mkq_B          128 NGDEAAASAFLEQA  141 (177)
T ss_dssp             TTCHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHh
Confidence            57777787775543

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=85.82  E-value=3  Score=39.12  Aligned_cols=63  Identities=6%  Similarity=0.042  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                      +.|...|++|++|.++.+.|.||--....-|.+..|.. .++.++|  ...|..-|..|+.-+...
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A--~~lAk~afd~Ai~eld~l  210 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA--CRLAKAAFDDAIAELDTL  210 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGGC
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHhhhcc
Confidence            57899999999999999999999877666666665554 7888888  445666677776666543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=85.66  E-value=12  Score=32.83  Aligned_cols=107  Identities=17%  Similarity=0.058  Sum_probs=75.7

Q ss_pred             CchHHHHHHHHHHHHccCh------HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHH
Q 013549          224 CTGSAALSYGEYLHATRNF------LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG  297 (441)
Q Consensus       224 ~~~~~a~~~a~~~~~qG~y------~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~  297 (441)
                      ..+.+..+|..+....|+.      ++=.+.|+||++-.   ..     .  . +..- ...+--....|.. ...++.+
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~---Pp-----~--k-~~~w-rrYI~LWIrYA~~-~ei~D~d   77 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL---PP-----D--K-YGQN-ESFARIQVRFAEL-KAIQEPD   77 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS---CG-----G--G-GTTC-HHHHHHHHHHHHH-HHHHCGG
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC---Cc-----c--c-cccH-HHHHHHHHHHHHH-HHhcCHH
Confidence            3456677787777777888      88889999999862   11     1  0 1110 1122223466644 6679999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          298 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       298 eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +|.+.|+.|+.+        |-..+.....-|..--+||+...|      ..++.+|+..
T Consensus        78 ~aR~vy~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kA------RkILg~AiG~  123 (161)
T 4h7y_A           78 DARDYFQMARAN--------CKKFAFVHISFAQFELSQGNVKKS------KQLLQKAVER  123 (161)
T ss_dssp             GCHHHHHHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHT
T ss_pred             HHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHcccHHHH------HHHHHHHhcc
Confidence            999999999997        444577777888889999998776      7888888774

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=85.37  E-value=1.9  Score=37.40  Aligned_cols=74  Identities=16%  Similarity=0.185  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549           60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN  139 (441)
Q Consensus        60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~  139 (441)
                      .+....-|||..+-++. ....-.+++.+++..+...     ++  ..=.++..||.-+++.|+|++|..+.+..|.+.+
T Consensus        37 vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~~-----~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP  108 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA-----ES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  108 (144)
T ss_dssp             SCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHC-----CS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-----cc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            44555667887776664 6677889999999998721     22  4667899999999999999999999999888776


Q ss_pred             hh
Q 013549          140 SI  141 (441)
Q Consensus       140 ~~  141 (441)
                      ..
T Consensus       109 ~n  110 (144)
T 1y8m_A          109 NN  110 (144)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=84.82  E-value=15  Score=32.36  Aligned_cols=53  Identities=17%  Similarity=0.206  Sum_probs=46.4

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      ...++.++|...|+.++..++...-+...+|.+-.+||+...|..+..+|+..
T Consensus        71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence            34689999999999999865556677788999999999999999999999976

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=84.46  E-value=3.4  Score=42.99  Aligned_cols=61  Identities=13%  Similarity=0.203  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                      ....+|.+.+.+..++.|..+|++|+.+.         |..|           ..+|-||.++..+|++-+|.-+|.|+|
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~---------P~~G-----------~~~nqLavla~~~~~~l~a~y~y~rsl  213 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLV---------PSNG-----------QPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTBS-----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhC---------CCCC-----------chHHHHHHHHhcccccHHHHHHHHHHH
Confidence            34567999999999999999999999982         1223           246889999999999999999999998


Q ss_pred             H
Q 013549          308 T  308 (441)
Q Consensus       308 ~  308 (441)
                      .
T Consensus       214 ~  214 (497)
T 1ya0_A          214 A  214 (497)
T ss_dssp             S
T ss_pred             h
Confidence            5

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=83.40  E-value=5.2  Score=35.85  Aligned_cols=48  Identities=27%  Similarity=0.123  Sum_probs=33.5

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      +..|+++.|..+.+..     ........+|...-.+|+++-|+..|+++=+.
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~   63 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF   63 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence            4788888888876543     12334556777777888888888888876544

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=83.18  E-value=2.4  Score=39.83  Aligned_cols=56  Identities=11%  Similarity=0.000  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549           83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~  138 (441)
                      +.|...|++|+.+..+.+.|.||-......|.+.+|++ .|+-++|..+-++|.+-+
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~A  203 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA  203 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            57889999999999888999999999999999999888 799999999999885544

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=82.60  E-value=12  Score=31.20  Aligned_cols=52  Identities=10%  Similarity=0.089  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS--HHPKVGVVLTCLALMFR  333 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~--~HP~va~~l~nLa~ly~  333 (441)
                      .+..-|.-.-..|+|++|..+|.+|++.+...+-.  ..|..-..+.....-|.
T Consensus        20 ~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl   73 (117)
T 2cpt_A           20 DLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL   73 (117)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            34566767778899999999999999999998743  45666666666655553

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=82.35  E-value=3.5  Score=39.31  Aligned_cols=55  Identities=15%  Similarity=0.093  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549           83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~  138 (441)
                      +.|...|++|+.+. ..+.|.||-......|.+.+|++ .++-++|+.+-++|.+-+
T Consensus       173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  228 (260)
T 2npm_A          173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA  228 (260)
T ss_dssp             HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            57899999999999 88999999999999999999988 799999999999886544

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=82.14  E-value=5.3  Score=38.03  Aligned_cols=63  Identities=6%  Similarity=0.042  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                      +.|...|++|++|.++.+.|.||--....-|.+..|.. .++.++|  ...|..-|..|+.-+...
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~A--c~LAk~AFd~Ai~eLd~L  236 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA--CRLAKAAFDDAIAELDTL  236 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGGC
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhcc
Confidence            57889999999999999999999987777777766655 6888887  344556666665555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=81.67  E-value=2.3  Score=46.64  Aligned_cols=61  Identities=11%  Similarity=0.088  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 013549          108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKC  172 (441)
Q Consensus       108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~  172 (441)
                      ...|+-=+..+.++|+|+-|+++-++|..+.++.+.    +|..|+.+|..+|+|+.|+-..+.|
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~----tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE----SWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH----HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH----HHHHHHHHHHHhccHHHHHHHHhcC
Confidence            445666677888899999999999999999988763    8999999999999999998777766

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=81.25  E-value=8.7  Score=43.62  Aligned_cols=105  Identities=10%  Similarity=-0.052  Sum_probs=73.4

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      .+...-..++-+--.+++    .|+.++|..+++..-....+-.   .|+ ..|+|.|-.-|++.|++++|.++|.+...
T Consensus       122 ~~~~~~~TynaLIdglcK----~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~  193 (1134)
T 3spa_A          122 QLSGQQQRLLAFFKCCLL----TDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKD  193 (1134)
T ss_dssp             CCCHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            344444445555555554    4789999999987654432222   334 35899999999999999999999998743


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCc-chhHHHHHHH
Q 013549          137 FKNSILGVRVAAMEALAGLYLQLGQD-DTSSVVADKC  172 (441)
Q Consensus       137 i~~~~lg~~~~al~~La~l~~~~G~~-~~A~~l~~~~  172 (441)
                      .   .+.+++.+++.|...+...|+. ++|..++++.
T Consensus       194 ~---G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM  227 (1134)
T 3spa_A          194 A---GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM  227 (1134)
T ss_dssp             T---TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             c---CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            2   2445677899988888888885 5666666554

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=81.20  E-value=5  Score=38.19  Aligned_cols=65  Identities=6%  Similarity=0.031  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhcCCC
Q 013549          297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKAPPL  363 (441)
Q Consensus       297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~  363 (441)
                      +.|...|++|++|.+.-+.|.||--....-|.+..|.. .+..++|  ...|..-|..|+.-+.....
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~A--c~lAk~Afd~Ai~eld~L~E  217 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA--CNLAKQAFDEAIAELDTLGE  217 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHH--HHHHHHHHHHHHHhhhccCh
Confidence            57899999999999999999999877666666665554 7888888  44567777788777665443

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=81.10  E-value=6.1  Score=37.34  Aligned_cols=62  Identities=11%  Similarity=0.171  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      +.|...|++|++|..+.+.|.||--....-|.+..|.. .+..++|  ...|..-|..|+.-+..
T Consensus       148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~A--c~lAk~Afd~Ai~eld~  210 (248)
T 3uzd_A          148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQA--CHLAKTAFDDAIAELDT  210 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhc
Confidence            67899999999999999999999977776677766554 7888887  33455566666555544

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=80.80  E-value=3.3  Score=39.50  Aligned_cols=56  Identities=11%  Similarity=0.005  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549           83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~  138 (441)
                      +.|+..|++|+.+..+.+.|.||-......|.+.+|+. .|+-++|+.+-++|.+-.
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  208 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            47899999999999888999999999999999999888 699999999999885443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	441
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 36/198 (18%)

Query: 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVA 169
           + + +  +L E+  +  A+    +      S+          LA +Y + G  D +    
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLR----ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260

Query: 170 DKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAA 229
            + ++L    +P     Y    + ANA+K       G++  AE  +            + 
Sbjct: 261 RRAIEL----QPHFPDAY---CNLANALKEK-----GSVAEAEDCYNTALRLCPTHADSL 308

Query: 230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL 289
            +         N   A + Y+K +EV     +F+                  A   L  +
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALEV---FPEFAA-----------------AHSNLASV 348

Query: 290 EAHMGNFGDAEEILTRTL 307
               G   +A       +
Sbjct: 349 LQQQGKLQEALMHYKEAI 366

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 16/149 (10%)

Query: 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTS 165
              +    ++ + YE G    AI+  ++    +         A   LA    + G    +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLANALKEKGSVAEA 290

Query: 166 SVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCT 225
               +  L+LC  H                     ++   GN+E A   ++   E     
Sbjct: 291 EDCYNTALRLCPTHADSLNN------------LANIKREQGNIEEAVRLYRKALEVFPEF 338

Query: 226 GSAALSYGEYLHATRNFLLAKKFYQKVIE 254
            +A  +    L        A   Y++ I 
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIR 367

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	441
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.85
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.84
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.8
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.64
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.63
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.63
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.6
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.6
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.53
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.46
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.42
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.37
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.25
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.23
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.17
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.16
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.14
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.14
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.08
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.08
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.07
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.06
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.05
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.0
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.99
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.96
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.92
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.92
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.91
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.9
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.88
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.85
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.83
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.82
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.5
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.32
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.29
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.23
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.95
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.88
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.55
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	85.63
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	84.34
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	81.97
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	81.56
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	81.43

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.8e-22  Score=189.60  Aligned_cols=296  Identities=15%  Similarity=0.091  Sum_probs=219.6

Q ss_pred             HHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhH
Q 013549           67 NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV  146 (441)
Q Consensus        67 n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~  146 (441)
                      ++|..+.+    .|+|++|+.+|++++...        |.-..++..+|.+|..+|+|++|+..|++++.+.+..    .
T Consensus         4 ~la~~~~~----~G~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~   67 (388)
T d1w3ba_           4 ELAHREYQ----AGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----A   67 (388)
T ss_dssp             THHHHHHH----HTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H
T ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H
Confidence            45555533    689999999999999743        3345679999999999999999999999999887654    2


Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC------------cchhh---------------------------
Q 013549          147 AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE------------NYKTY---------------------------  187 (441)
Q Consensus       147 ~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~------------~~~~~---------------------------  187 (441)
                      .++.+++.+|..+|++++|...+.++..........            .....                           
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA  147 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            478899999999999999998888776542110000            00000                           


Q ss_pred             -----hhh------------HhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHH
Q 013549          188 -----GAV------------NSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQ  250 (441)
Q Consensus       188 -----~~l------------~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~  250 (441)
                           ...            ........+..+..+|++++|...+++++...+....+...+|.++...|+|++|+..|+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  227 (388)
T d1w3ba_         148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL  227 (388)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             cchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHH
Confidence                 000            000111235566679999999999999999777777778888999999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 013549          251 KVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL  330 (441)
Q Consensus       251 rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~  330 (441)
                      +++.+   ...                 ....+.++|.+|..+|++++|+++|++++++        +|....++.++|.
T Consensus       228 ~~~~~---~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~  279 (388)
T d1w3ba_         228 RALSL---SPN-----------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLAN  279 (388)
T ss_dssp             HHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHH
T ss_pred             HhHHH---hhh-----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            98877   111                 1235678999999999999999999999875        4566677889999


Q ss_pred             HHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchh----hHHHHHHHHH
Q 013549          331 MFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK----DEGERMKRWA  406 (441)
Q Consensus       331 ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~----~eae~~~~~a  406 (441)
                      +|..+|++++|      +..|++++...       |.......+++.++..+|+|++|+....+-.    ..++.+...+
T Consensus       280 ~~~~~~~~~~A------~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  346 (388)
T d1w3ba_         280 ALKEKGSVAEA------EDCYNTALRLC-------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA  346 (388)
T ss_dssp             HHHHHSCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             HHHHcCCHHHH------HHHHHhhhccC-------CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999998887      77888876653       2233455677888888899999888764322    2356777788


Q ss_pred             HHHHhccChhHHH
Q 013549          407 EAAWRNRRVSLAE  419 (441)
Q Consensus       407 ~~~~~~~r~~~~~  419 (441)
                      ..+++.+++..|.
T Consensus       347 ~~~~~~g~~~~A~  359 (388)
T d1w3ba_         347 SVLQQQGKLQEAL  359 (388)
T ss_dssp             HHHHTTTCCHHHH
T ss_pred             HHHHHcCCHHHHH
Confidence            8888888877663

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-21  Score=187.38  Aligned_cols=268  Identities=18%  Similarity=0.119  Sum_probs=206.0

Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549           62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI  141 (441)
Q Consensus        62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~  141 (441)
                      ...+.++|.++.    ..|+|++|+.+|++++.+.        |..+.++.++|.+|..+|+|++|++.++++....+..
T Consensus        33 ~~~~~~la~~~~----~~~~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          33 TGVLLLLSSIHF----QCRRLDRSAHFSTLAIKQN--------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF  100 (388)
T ss_dssp             HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHhhhhcccccccccccccccccccc
Confidence            345777888874    3689999999999999753        4456789999999999999999999998876543211


Q ss_pred             hhh----------------------------------------------------------------hHHHHHHHHHHHH
Q 013549          142 LGV----------------------------------------------------------------RVAAMEALAGLYL  157 (441)
Q Consensus       142 lg~----------------------------------------------------------------~~~al~~La~l~~  157 (441)
                      ...                                                                ....+..++..+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (388)
T d1w3ba_         101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN  180 (388)
T ss_dssp             HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccc
Confidence            000                                                                0123455677788


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                      .+|++.+|..++++++.+.    |..        ..+....|.++...|+|++|+..|++++...+........+|.++.
T Consensus       181 ~~~~~~~A~~~~~~al~~~----p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (388)
T d1w3ba_         181 AQGEIWLAIHHFEKAVTLD----PNF--------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHhC----ccc--------HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Confidence            8888888888888776432    111        1112235777788999999999999999866666677788899999


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      .+|++++|+.+|++|+++   ...                 ...++.++|.+|..+|++++|++.|++++..        
T Consensus       249 ~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------  300 (388)
T d1w3ba_         249 EQGLIDLAIDTYRRAIEL---QPH-----------------FPDAYCNLANALKEKGSVAEAEDCYNTALRL--------  300 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHT---CSS-----------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------
T ss_pred             HCCCHHHHHHHHHHHHHh---CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------
Confidence            999999999999999987   111                 1245789999999999999999999998764        


Q ss_pred             CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549          318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN  394 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~  394 (441)
                      +|.....+..+|.+|..+|++++|      +..|++++++.       |+....+.++|.++..+|+|++|+..+++
T Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         301 CPTHADSLNNLANIKREQGNIEEA------VRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHTTSC-------TTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCccchhhhHHHHHHHHCCCHHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            466667888999999999999887      88999987652       34445677899999999999998887643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3e-20  Score=175.30  Aligned_cols=311  Identities=13%  Similarity=0.011  Sum_probs=235.5

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RVAAMEALAGL  155 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~--~~~al~~La~l  155 (441)
                      ..|+|++|+.+|+++|.+...   .+++..+.++.++|.+|..+|+|++|++.|++++.+.+.....  ...++.+++.+
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  100 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  100 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            468999999999999987643   3456678899999999999999999999999999887764211  23467788999


Q ss_pred             HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----cCCchHHHH
Q 013549          156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE-----EGCTGSAAL  230 (441)
Q Consensus       156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-----~~~~~~~a~  230 (441)
                      +..+|++..+...+.+++.+.........    ..........+.++..+|++++|...|++++..     ......+..
T Consensus       101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_         101 LFAQGFLQTAWETQEKAFQLINEQHLEQL----PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTS----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhcccchh----hHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            99999999999999999998876652211    111122234577788999999999999999882     112233445


Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      ..+..+...|++.+|...+.++..+......     .       +. ........+|.++...|++++|.+++++++.+ 
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-----~-------~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-  242 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLENLLGNGKY-----H-------SD-WISNANKVRVIYWQMTGDKAAAANWLRHTAKP-  242 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-----C-------HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-----c-------Cc-hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-
Confidence            6688899999999999999999998532111     0       11 12335678999999999999999999998764 


Q ss_pred             HHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHH
Q 013549          311 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALS  390 (441)
Q Consensus       311 e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~  390 (441)
                         ....++.......++|.+|..+|++++|      ...+++++.+.+. ...+|+....+.+++.++..+|++++|+.
T Consensus       243 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~  312 (366)
T d1hz4a_         243 ---EFANNHFLQGQWRNIARAQILLGEFEPA------EIVLEELNENARS-LRLMSDLNRNLLLLNQLYWQAGRKSDAQR  312 (366)
T ss_dssp             ---CCTTCGGGHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ---ccccchHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHhh-cccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence               3456677788899999999999999987      8999999999865 34567777788899999999999999988


Q ss_pred             Hhhchhh-------------HHHHHHHHHHHHHhccChhHHH
Q 013549          391 VQQNRKD-------------EGERMKRWAEAAWRNRRVSLAE  419 (441)
Q Consensus       391 ~~~~r~~-------------eae~~~~~a~~~~~~~r~~~~~  419 (441)
                      ....-..             +++.+......+-..++++.++
T Consensus       313 ~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         313 VLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence            6533221             2344444455555556655554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.8e-20  Score=175.08  Aligned_cols=242  Identities=12%  Similarity=0.083  Sum_probs=184.0

Q ss_pred             HHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh
Q 013549           66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR  145 (441)
Q Consensus        66 ~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~  145 (441)
                      -+.|..+.    ..|+|++|+.+|++++.+        +|.-..++.++|.+|..+|+|++|+..|++++.+.+...   
T Consensus        23 ~~~g~~~~----~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---   87 (323)
T d1fcha_          23 FEEGLRRL----QEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ---   87 (323)
T ss_dssp             HHHHHHHH----HTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred             HHHHHHHH----HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc---
Confidence            46677763    368999999999999974        344567899999999999999999999999998876542   


Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC-cchh----hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 013549          146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE-NYKT----YGAVNSRANAVKGLVELAHGNLESAESFFKGLQE  220 (441)
Q Consensus       146 ~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~-~~~~----~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~  220 (441)
                       ..+.+++.+|..+|++++|...+++++.+....... ....    ...+..... . .......+++++|...|++++.
T Consensus        88 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_          88 -TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR-I-LGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C-T-THHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchh-h-HHHHHHhhHHHHHHHHHHHHHH
Confidence             467889999999999999999998887553221100 0000    000000000 0 0112357789999999999998


Q ss_pred             ccC--CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549          221 EEG--CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD  298 (441)
Q Consensus       221 ~~~--~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e  298 (441)
                      ..+  ..+.+..++|.++..+|++++|+..|++++.+   ...                 ...++.++|.+|..+|+|++
T Consensus       165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~lg~~~~~~g~~~~  224 (323)
T d1fcha_         165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPN-----------------DYLLWNKLGATLANGNQSEE  224 (323)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccc-----------------cccchhhhhhcccccccchh
Confidence            433  23456678899999999999999999999987   111                 12357899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      |+++|++++.+        .|....++.+||.+|..+|++++|      ...|++||++..
T Consensus       225 A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~p  271 (323)
T d1fcha_         225 AVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREA------VEHFLEALNMQR  271 (323)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--------hhccHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCC
Confidence            99999999986        344456789999999999999987      899999999974

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=6.2e-19  Score=166.13  Aligned_cols=266  Identities=14%  Similarity=0.112  Sum_probs=209.6

Q ss_pred             chHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 013549           58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF  137 (441)
Q Consensus        58 h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i  137 (441)
                      .+..+..+.++|.++.    ..|+|++|+.+|++++.+....  ++++..+.++.+++.++..+|++.+|++.+.+++.+
T Consensus        47 ~~~~~~a~~~lg~~~~----~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  120 (366)
T d1hz4a_          47 FYSRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  120 (366)
T ss_dssp             HHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566778888873    4789999999999999988665  478889999999999999999999999999999988


Q ss_pred             hhhhhhh----hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549          138 KNSILGV----RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES  213 (441)
Q Consensus       138 ~~~~lg~----~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~  213 (441)
                      .+...+.    .......++.++..+|+++.+..++++++.........       .........+..+...|+++++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~  193 (366)
T d1hz4a_         121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ-------QQLQCLAMLIQCSLARGDLDNARS  193 (366)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-------GGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh-------hHHHHHHHHHHHHHhhhhHHHHHH
Confidence            7754322    12356678899999999999999999988776554421       111222334666778999999999


Q ss_pred             HHHhhhhc----cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHH
Q 013549          214 FFKGLQEE----EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL  286 (441)
Q Consensus       214 l~~~aL~~----~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nL  286 (441)
                      .+.++...    ....   ..+....+.++...|++++|..++++++.+   ...   .+          ........+|
T Consensus       194 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~----------~~~~~~~~~l  257 (366)
T d1hz4a_         194 QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFA---NN----------HFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCT---TC----------GGGHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---ccc---cc----------hHHHHHHHHH
Confidence            99998871    1111   223345678889999999999999998876   111   11          1123456899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          287 GQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       287 g~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      |.+|..+|+|++|..++++++.+.++.  ..+|....++.++|.+|..+|++++|      ...|++||++...
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~l~~Al~l~~~  323 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDA------QRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHhhh
Confidence            999999999999999999999999874  67899999999999999999999987      8999999999754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.8e-18  Score=161.34  Aligned_cols=248  Identities=15%  Similarity=0.130  Sum_probs=188.5

Q ss_pred             HHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHH
Q 013549           88 VLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSV  167 (441)
Q Consensus        88 ~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~  167 (441)
                      .|++++...+...-.+++.    ..+.|..+..+|+|++|+..|++++...+...    .++..++.+|..+|++++|..
T Consensus         3 ~~~~~~~~~~~n~~~~~~~----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~~~~~~A~~   74 (323)
T d1fcha_           3 TYDKGYQFEEENPLRDHPQ----PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----EAWQYLGTTQAENEQELLAIS   74 (323)
T ss_dssp             HHHCCCCCCSSCTTTTCSS----HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHTTCHHHHHH
T ss_pred             chHHhHhhcccCCCcchHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHH
Confidence            4677777665543345555    46899999999999999999999998887642    478899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchH---------H------HHHH
Q 013549          168 VADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGS---------A------ALSY  232 (441)
Q Consensus       168 l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~---------~------a~~~  232 (441)
                      .+++++++.    |..   ..     .....|.++..+|++++|...|++++...+....         .      ....
T Consensus        75 ~~~~al~~~----p~~---~~-----~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (323)
T d1fcha_          75 ALRRCLELK----PDN---QT-----ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI  142 (323)
T ss_dssp             HHHHHHHHC----TTC---HH-----HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred             HHHhhhccc----ccc---cc-----ccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhh
Confidence            999998653    111   11     1223577788999999999999999882221100         0      0111


Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      ...+...+.+.+|...|++++.+   ..     ...          ....+.++|.++..+|+|++|+..|++++.+   
T Consensus       143 ~~~~~~~~~~~~a~~~~~~al~~---~p-----~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---  201 (323)
T d1fcha_         143 LGSLLSDSLFLEVKELFLAAVRL---DP-----TSI----------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---  201 (323)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHH---ST-----TSC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHH---hh-----ccc----------ccccchhhHHHHHHHHHHhhhhccccccccc---
Confidence            23455678899999999999987   11     111          1235689999999999999999999999875   


Q ss_pred             hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549          313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ  392 (441)
Q Consensus       313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~  392 (441)
                           +|....++.++|.+|..+|++++|      ...|++++++.    |++   ...+.++|.++...|+|.+|+..+
T Consensus       202 -----~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~----p~~---~~a~~~lg~~~~~~g~~~~A~~~~  263 (323)
T d1fcha_         202 -----RPNDYLLWNKLGATLANGNQSEEA------VAAYRRALELQ----PGY---IRSRYNLGISCINLGAHREAVEHF  263 (323)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTC---HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             -----ccccccchhhhhhcccccccchhH------HHHHHHHHHHh----hcc---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence                 456667899999999999999987      89999999872    333   356788999999999999998876


Q ss_pred             hc
Q 013549          393 QN  394 (441)
Q Consensus       393 ~~  394 (441)
                      ..
T Consensus       264 ~~  265 (323)
T d1fcha_         264 LE  265 (323)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=5.3e-15  Score=141.35  Aligned_cols=213  Identities=9%  Similarity=0.036  Sum_probs=149.2

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RVAAMEALAGL  155 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~--~~~al~~La~l  155 (441)
                      +.++|.+|..+|.++                      |.+|..+|+|++|++.|++++++....-..  ....+.+++.+
T Consensus        29 ~~~~~~~Aa~~y~~a----------------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~   86 (290)
T d1qqea_          29 DSYKFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKC   86 (290)
T ss_dssp             SHHHHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHH----------------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            455677777776665                      789999999999999999999987653111  13578899999


Q ss_pred             HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHH-HcCCHHHHHHHHHhhhh---ccCC---chHH
Q 013549          156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVEL-AHGNLESAESFFKGLQE---EEGC---TGSA  228 (441)
Q Consensus       156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~-~qG~y~eAe~l~~~aL~---~~~~---~~~~  228 (441)
                      |.++|++++|...+++++.+........      ........++.++. ..|+|++|+.+|++++.   ....   ...+
T Consensus        87 y~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~  160 (290)
T d1qqea_          87 FKSGGNSVNAVDSLENAIQIFTHRGQFR------RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC  160 (290)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhCCcHHHHHHHHHhhHHhhhcccch------hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhH
Confidence            9999999999999999999987765211      11111112343443 46999999999999988   1111   2344


Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ..++|.++..+|+|++|..+|++++.+.   ..   .+. .  ...    ....+.++|.++...|++++|...+++++.
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~---~~---~~~-~--~~~----~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSS---MG---NRL-S--QWS----LKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT---SS---CTT-T--GGG----HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHhC---cc---chh-h--hhh----HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5678999999999999999999999883   22   111 0  110    112457899999999999999999999998


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHH
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRN  334 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~  334 (441)
                      +........   -...+.+|...|..
T Consensus       228 ~~~~~~~sr---e~~~l~~l~~a~~~  250 (290)
T d1qqea_         228 EDPNFADSR---ESNFLKSLIDAVNE  250 (290)
T ss_dssp             C------------HHHHHHHHHHHHT
T ss_pred             hCCCccchH---HHHHHHHHHHHHHh
Confidence            875543222   23456667676655

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=8.9e-15  Score=134.85  Aligned_cols=229  Identities=14%  Similarity=0.059  Sum_probs=160.8

Q ss_pred             cChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 013549           77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY  156 (441)
Q Consensus        77 ~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~  156 (441)
                      ...+++..|+.-+++.+....    ...+.-+.++.++|.+|..+|+|++|++.|++++.+.+..    +.+++++|.+|
T Consensus        10 ~~~~~~e~al~~~~e~l~~~~----~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~   81 (259)
T d1xnfa_          10 QPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYL   81 (259)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHhhhchHH
Confidence            356788899999999887442    2456789999999999999999999999999999988764    34789999999


Q ss_pred             HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549          157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL  236 (441)
Q Consensus       157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~  236 (441)
                      ..+|++++|...+++++.+-....       .     +....|.++..+|++++|+..|++++...+........++..+
T Consensus        82 ~~~g~~~~A~~~~~~al~~~p~~~-------~-----a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  149 (259)
T d1xnfa_          82 TQAGNFDAAYEAFDSVLELDPTYN-------Y-----AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE  149 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCT-------H-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHhhhh-------h-----hHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            999999999999999986532111       1     1234588888999999999999999995554444444445455


Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      ...+..+.+..+.+.....        +....+         .......++. ....+.+++++..+.+++.+.      
T Consensus       150 ~~~~~~~~~~~~~~~~~~~--------~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------  205 (259)
T d1xnfa_         150 QKLDEKQAKEVLKQHFEKS--------DKEQWG---------WNIVEFYLGN-ISEQTLMERLKADATDNTSLA------  205 (259)
T ss_dssp             HHHCHHHHHHHHHHHHHHS--------CCCSTH---------HHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHH------
T ss_pred             HHhhhHHHHHHHHHHhhcc--------chhhhh---------hhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcC------
Confidence            5556555555554443332        111111         0000111111 123344556666665555543      


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                        |....++.+||.+|..+|++++|      ...|++||..
T Consensus       206 --~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~  238 (259)
T d1xnfa_         206 --EHLSETNFYLGKYYLSLGDLDSA------TALFKLAVAN  238 (259)
T ss_dssp             --HHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTT
T ss_pred             --cccHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHc
Confidence              56677899999999999999987      8899999754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.2e-14  Score=138.83  Aligned_cols=173  Identities=11%  Similarity=0.074  Sum_probs=136.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549          199 GLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN  272 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~  272 (441)
                      |.+|..+|+|++|...|+++++.   ....   ..+..++|.+|..+|++++|...|++|+++......           
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-----------  112 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----------  112 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-----------
Confidence            55677899999999999999981   1122   234466799999999999999999999999643221           


Q ss_pred             cchhHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549          273 MALEEVALAATFALGQLEAH-MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY  351 (441)
Q Consensus       273 ~~~~~~~~~al~nLg~ly~~-qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly  351 (441)
                        + .....++.++|.+|.. .|+|++|+++|++|+++.++.  .+.+..+.++.++|.+|..+|+|++|      ...|
T Consensus       113 --~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A------~~~~  181 (290)
T d1qqea_         113 --F-RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEA------SDIY  181 (290)
T ss_dssp             --H-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred             --c-hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHH------HHHH
Confidence              1 1133467899999865 699999999999999999864  34567789999999999999999987      8899


Q ss_pred             HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549          352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ  393 (441)
Q Consensus       352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~  393 (441)
                      ++++.+.......+......+.+.+++++..|++..|....+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~  223 (290)
T d1qqea_         182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (290)
T ss_dssp             HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            999888754433445555566788899999999999977653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.8e-14  Score=136.37  Aligned_cols=241  Identities=12%  Similarity=0.055  Sum_probs=186.4

Q ss_pred             chHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 013549           58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN-YVEAIEKLQKVEN  136 (441)
Q Consensus        58 h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~-y~eA~e~~~ral~  136 (441)
                      -|+-+..|.+++.++.+    ++++++|+.++++++.+.        |....++++.|.++...|+ |++|+..+++++.
T Consensus        39 ~p~~~~a~~~~~~~~~~----~e~~~~Al~~~~~ai~ln--------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~  106 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQR----DERSERAFKLTRDAIELN--------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE  106 (315)
T ss_dssp             CHHHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHh----CCchHHHHHHHHHHHHHC--------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            37888899999999843    578999999999999854        4446789999999999885 9999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549          137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK  216 (441)
Q Consensus       137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~  216 (441)
                      +.+...    .++++++.++..+|++.+|..++++++.+--+.            ..+....|.++...|+|++|+..|+
T Consensus       107 ~~p~~~----~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n------------~~a~~~~~~~~~~~~~~~~Al~~~~  170 (315)
T d2h6fa1         107 EQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------------YHAWQHRQWVIQEFKLWDNELQYVD  170 (315)
T ss_dssp             HCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             HHHhhh----hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc------------hHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            887653    478999999999999999999999997553111            1122345777889999999999999


Q ss_pred             hhhhccCCchHHHHHHHHHHHHccC------hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549          217 GLQEEEGCTGSAALSYGEYLHATRN------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE  290 (441)
Q Consensus       217 ~aL~~~~~~~~~a~~~a~~~~~qG~------y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly  290 (441)
                      +++..++....+..+.+.++...|+      +++|+..|.+||.+.                  |.  ...+.++++.++
T Consensus       171 ~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~------------------P~--~~~~~~~l~~ll  230 (315)
T d2h6fa1         171 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV------------------PH--NESAWNYLKGIL  230 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS------------------TT--CHHHHHHHHHHH
T ss_pred             HHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC------------------CC--chHHHHHHHHHH
Confidence            9999877777777888888877766      679999999999881                  11  124578899887


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh--hchhhhhhhHHHHHHHHHHHHHhh
Q 013549          291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK--AMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q--G~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      ...| ++++.+.+.+++++.     ++| .....+..++.+|...  ++.+.      ++..+.+|+++.+
T Consensus       231 ~~~~-~~~~~~~~~~~~~l~-----~~~-~~~~~~~~l~~~y~~~~~~~~~~------~~~~~~ka~~l~~  288 (315)
T d2h6fa1         231 QDRG-LSKYPNLLNQLLDLQ-----PSH-SSPYLIAFLVDIYEDMLENQCDN------KEDILNKALELCE  288 (315)
T ss_dssp             TTTC-GGGCHHHHHHHHHHT-----TTC-CCHHHHHHHHHHHHHHHHTTCSS------HHHHHHHHHHHHH
T ss_pred             HhcC-hHHHHHHHHHHHHhC-----CCc-CCHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence            6654 799999999998753     233 2334566777888654  33333      4788889988864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.3e-14  Score=135.68  Aligned_cols=204  Identities=6%  Similarity=-0.031  Sum_probs=164.1

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhcCCC
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ-DDTSSVVADKCLQLCEKHKPE  182 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~-~~~A~~l~~~~L~i~~~~~~~  182 (441)
                      .|..+.+++++|.++..++++++|++.+++++.+.+...    .++++.+.++..+|+ +++|..++++++.+--+.   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~----~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~---  111 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---  111 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh---
Confidence            578999999999999999999999999999999988764    478999999988886 789999999887553211   


Q ss_pred             cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhccc
Q 013549          183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF  262 (441)
Q Consensus       183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~  262 (441)
                          ..     +....|.++..+|+|++|+.+|.+++...+....+..++|.++...|+|++|+..|+++|++   .-  
T Consensus       112 ----~~-----a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p--  177 (315)
T d2h6fa1         112 ----YQ-----VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DV--  177 (315)
T ss_dssp             ----HH-----HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CT--
T ss_pred             ----hh-----HHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CC--
Confidence                11     22345778889999999999999999977777788889999999999999999999999998   11  


Q ss_pred             CCCCCccccccchhHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549          263 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNF------GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA  336 (441)
Q Consensus       263 ~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y------~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG  336 (441)
                         .            ...+++++|.++...|++      ++|.+.+.+||.+        +|.-...+++++.++...|
T Consensus       178 ---~------------n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~  234 (315)
T d2h6fa1         178 ---R------------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG  234 (315)
T ss_dssp             ---T------------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC
T ss_pred             ---c------------cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC
Confidence               1            134689999999988885      5677777776654        4555677888999987655


Q ss_pred             chhhhhhhHHHHHHHHHHHHHh
Q 013549          337 MQEHSSALLIQEGLYRRALEFL  358 (441)
Q Consensus       337 ~~eeA~~~~~Ae~ly~rAL~i~  358 (441)
                       .+++      ...+.+++++.
T Consensus       235 -~~~~------~~~~~~~~~l~  249 (315)
T d2h6fa1         235 -LSKY------PNLLNQLLDLQ  249 (315)
T ss_dssp             -GGGC------HHHHHHHHHHT
T ss_pred             -hHHH------HHHHHHHHHhC
Confidence             3444      78888888874

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=7.5e-14  Score=128.50  Aligned_cols=203  Identities=11%  Similarity=-0.000  Sum_probs=139.7

Q ss_pred             hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549           59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~  138 (441)
                      |.-|....+.|.+|.    ..|+|++|+..|+++|.+.     |++   +.++++||.+|..+|+|++|++.|++++.+.
T Consensus        34 ~~~a~~~~~~G~~y~----~~g~~~~A~~~~~~al~l~-----p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  101 (259)
T d1xnfa_          34 DERAQLLYERGVLYD----SLGLRALARNDFSQALAIR-----PDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD  101 (259)
T ss_dssp             HHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH----HCCCHHHHHHHHHHhhccC-----CCC---HHHHhhhchHHHHHHHHHHhhhhhhHHHHHH
Confidence            556777788999984    3789999999999999865     344   5679999999999999999999999999988


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549          139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL  218 (441)
Q Consensus       139 ~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a  218 (441)
                      +...    .++.+++.+|..+|++.+|...+++++++....            .......++.+...+..+.+..+....
T Consensus       102 p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
T d1xnfa_         102 PTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND------------PFRSLWLYLAEQKLDEKQAKEVLKQHF  165 (259)
T ss_dssp             TTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hhhh----hhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc------------HHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            7642    367899999999999999999999987553111            011123455555666666666555555


Q ss_pred             hhccCCch--HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCH
Q 013549          219 QEEEGCTG--SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF  296 (441)
Q Consensus       219 L~~~~~~~--~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y  296 (441)
                      ....+...  .....+.......+.+++++..+.+++.+.                  |.  ...+..+||.+|..+|+|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~--~~~~~~~lg~~~~~~g~~  225 (259)
T d1xnfa_         166 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA------------------EH--LSETNFYLGKYYLSLGDL  225 (259)
T ss_dssp             HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH------------------HH--HHHHHHHHHHHHHHTTCH
T ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------------------cc--cHHHHHHHHHHHHHCCCH
Confidence            44222221  111111111122344445555544444441                  11  123578999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013549          297 GDAEEILTRTLTK  309 (441)
Q Consensus       297 ~eAe~l~~rAL~i  309 (441)
                      ++|..+|++||..
T Consensus       226 ~~A~~~~~~al~~  238 (259)
T d1xnfa_         226 DSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999853

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2e-13  Score=131.81  Aligned_cols=262  Identities=8%  Similarity=-0.127  Sum_probs=179.7

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWR-------GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEA  151 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~-------a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~  151 (441)
                      .+.+++|+.+++++|.+.     |+++..       ...+..++..+...|++.+|+..+++++.+.+...    ..+..
T Consensus        42 ~~~~~~al~~~~~~l~~~-----P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~----~~~~~  112 (334)
T d1dcea1          42 GELDESVLELTSQILGAN-----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWHH  112 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHH
T ss_pred             ccccHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH----HHHHH
Confidence            344589999999999855     555432       24455556667777889999999999988876553    35677


Q ss_pred             HHHHHHhcCC--cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHH
Q 013549          152 LAGLYLQLGQ--DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAA  229 (441)
Q Consensus       152 La~l~~~~G~--~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a  229 (441)
                      ++.++..+++  ++++...+++++.+-.+..       ...    ....|.++..+|++++|...+++++..++....+.
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~  181 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEADERNF-------HCW----DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  181 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH-------HHH----HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhCchhh-------hhh----hhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHH
Confidence            7777777775  5678878887765421111       111    12457778889999999999999999877788888


Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC-CCccccccchhHHH---------HHHHHHHHHHHHHcCCHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM-NTLGSCNMALEEVA---------LAATFALGQLEAHMGNFGDA  299 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~-~~lg~~~~~~~~~~---------~~al~nLg~ly~~qG~y~eA  299 (441)
                      .++|.++..+|+|++|+..+++++.+.......... ..++..+.......         ..+..++|.++...|++++|
T Consensus       182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a  261 (334)
T d1dcea1         182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES  261 (334)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence            889999999999998877777666663321100000 00000000000000         00123678888889999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHH
Q 013549          300 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA  379 (441)
Q Consensus       300 e~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~  379 (441)
                      ...+.+++        +.+|....++.++|.+|..+|++++|      ...|++|+++-       |.-..-+++++..+
T Consensus       262 ~~~~~~~~--------~~~p~~~~~~~~l~~~~~~~~~~~eA------~~~~~~ai~ld-------P~~~~y~~~L~~~~  320 (334)
T d1dcea1         262 CKELQELE--------PENKWCLLTIILLMRALDPLLYEKET------LQYFSTLKAVD-------PMRAAYLDDLRSKF  320 (334)
T ss_dssp             HHHHHHHC--------TTCHHHHHHHHHHHHHHCTGGGHHHH------HHHHHHHHHHC-------GGGHHHHHHHHHHH
T ss_pred             HHHHHHHH--------hhCchHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHC-------cccHHHHHHHHHHH
Confidence            88887765        68899999999999999999999987      89999998872       33334445555444


Q ss_pred             HH
Q 013549          380 LA  381 (441)
Q Consensus       380 ~~  381 (441)
                      +.
T Consensus       321 ~~  322 (334)
T d1dcea1         321 LL  322 (334)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.7e-14  Score=144.90  Aligned_cols=212  Identities=12%  Similarity=-0.004  Sum_probs=123.3

Q ss_pred             HHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcc
Q 013549           84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDD  163 (441)
Q Consensus        84 eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~  163 (441)
                      ||+++|+||+.+.        |+.+.++.++|.+|..+|++.+|   |++++.+.+... .   +.+....+ +.. .|.
T Consensus         4 eA~q~~~qA~~l~--------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a-~---~~~~e~~L-w~~-~y~   66 (497)
T d1ya0a1           4 QSAQYLRQAEVLK--------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYA-L---DKKVEQDL-WNH-AFK   66 (497)
T ss_dssp             HHHHHHHHHHHHH--------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHH-H---HHTHHHHH-HHH-HTH
T ss_pred             HHHHHHHHHHHcC--------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhH-H---HHhHHHHH-HHH-HHH
Confidence            8999999999865        44566789999999999999987   889876655421 1   11111111 111 111


Q ss_pred             hhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChH
Q 013549          164 TSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFL  243 (441)
Q Consensus       164 ~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~  243 (441)
                      .+...+++..    +...  ..   ........+.+.++..+|.|++|...|++++...+.......++|.++..+|+++
T Consensus        67 ~~ie~~r~~~----k~~~--~~---~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~  137 (497)
T d1ya0a1          67 NQITTLQGQA----KNRA--NP---NRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS  137 (497)
T ss_dssp             HHHHHHHHHH----SCSS--CT---TTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred             HHHHHHHHhc----cccc--Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHH
Confidence            2222222211    1110  00   0111112234555667888888888888887755445556677888999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHH
Q 013549          244 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV  323 (441)
Q Consensus       244 eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~  323 (441)
                      +|...|++++.+-.                      -.++.+||.++..+|+|++|+.+|++|+.+        .|+.+.
T Consensus       138 ~A~~~~~~al~~~~----------------------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~  187 (497)
T d1ya0a1         138 AIVKPQSSSCSYIC----------------------QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQ  187 (497)
T ss_dssp             -----CCHHHHHHH----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSH
T ss_pred             HHHHHHHHHhCCCH----------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchH
Confidence            99999999987721                      135789999999999999999999999988        599999


Q ss_pred             HHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          324 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       324 ~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      .+++||.+|..+|++.+|      ...|.|||.+
T Consensus       188 ~~~~Lg~~~~~~~~~~~A------~~~y~ral~~  215 (497)
T d1ya0a1         188 PYNQLAILASSKGDHLTT------IFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHH------HHHHHHHHSS
T ss_pred             HHHHHHHHHHHcCCHHHH------HHHHHHHHhC
Confidence            999999999999998887      8889999765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.42  E-value=3.3e-12  Score=111.02  Aligned_cols=121  Identities=10%  Similarity=0.049  Sum_probs=95.0

Q ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549          233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE  312 (441)
Q Consensus       233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~  312 (441)
                      |..+..+|+|++|+..|++||+|....   .+.....     .......+++|+|.+|..+|+|++|...|+++|.+..+
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~---~~~~~~~-----~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTM---PPEEAFD-----HAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTS---CTTSCCC-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhh---hhhhhcc-----cchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            677888999999999999999994221   1111111     11123346789999999999999999999999999998


Q ss_pred             hh---CCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcc
Q 013549          313 LF---GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG  367 (441)
Q Consensus       313 ~l---G~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~  367 (441)
                      ..   +..+|....+++|+|.+|..+|++++|      ...|++|+++........+.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA------~~~~~~Al~l~~~~~~~~~~  139 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEA------MPEFKKVVEMIEERKGETPG  139 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHCCSCCTT
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHH------HHHHHHHHHhhHHhhchHHH
Confidence            63   355677888999999999999999997      89999999998654444444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.1e-12  Score=115.47  Aligned_cols=132  Identities=19%  Similarity=0.222  Sum_probs=107.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|..+..+|+|++|...|.++..   ..+.+..++|.+|..+|+|++|+..|++||++   ..     .           
T Consensus        11 ~g~~~~~~~d~~~Al~~~~~i~~---~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp-----~-----------   68 (192)
T d1hh8a_          11 EGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DK-----H-----------   68 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T-----------
T ss_pred             HHHHHHHCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hh-----h-----------
Confidence            47778899999999999998643   34567889999999999999999999999998   11     1           


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------HhhCCCC-chHHHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTE-------ELFGSHH-PKVGVVLTCLALMFRNKAMQEHSSALLIQEG  349 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e-------~~lG~~H-P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~  349 (441)
                       ...+++++|.+|..+|+|++|...|++|+...+       ..+|... +....++.|+|.+|..+|++++|      ..
T Consensus        69 -~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A------~~  141 (192)
T d1hh8a_          69 -LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA------EE  141 (192)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH------HH
T ss_pred             -hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH------HH
Confidence             134688999999999999999999999997532       2233332 44568899999999999999987      78


Q ss_pred             HHHHHHHHh
Q 013549          350 LYRRALEFL  358 (441)
Q Consensus       350 ly~rAL~i~  358 (441)
                      .+.+|+.+.
T Consensus       142 ~l~~A~~~~  150 (192)
T d1hh8a_         142 QLALATSMK  150 (192)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            888887764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=2.4e-12  Score=123.98  Aligned_cols=203  Identities=9%  Similarity=-0.108  Sum_probs=125.7

Q ss_pred             hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549           80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL  159 (441)
Q Consensus        80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~  159 (441)
                      +++++|+.++++++.+..       +.+......+|.++..+|++++|++.+++++.+.+..    ..++++++.++..+
T Consensus       123 ~~~~~a~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~----~~a~~~l~~~~~~~  191 (334)
T d1dcea1         123 PNWARELELCARFLEADE-------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN----YSSWHYRSCLLPQL  191 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC----HHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCc-------hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHh
Confidence            345666666666665431       1222334455566666666666666666655554332    23555666666666


Q ss_pred             CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549          160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT  239 (441)
Q Consensus       160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q  239 (441)
                      |++++|...+++++.+.....               . ........+++++|...|.+++...+.......+++.++...
T Consensus       192 ~~~~~A~~~~~~~~~~~~~~~---------------~-~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~  255 (334)
T d1dcea1         192 HPQPDSGPQGRLPENVLLKEL---------------E-LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL  255 (334)
T ss_dssp             SCCCCSSSCCSSCHHHHHHHH---------------H-HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHH
T ss_pred             cCHHHHHHHHHHhHHhHHHHH---------------H-HHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence            666655444433333321110               0 011123456667777777777764333333333456677788


Q ss_pred             cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549          240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP  319 (441)
Q Consensus       240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP  319 (441)
                      |++.+|...+.+++.+   .               |.  ...++.+||.+|..+|++++|..+|++|+++        .|
T Consensus       256 ~~~~~a~~~~~~~~~~---~---------------p~--~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--------dP  307 (334)
T d1dcea1         256 QSELESCKELQELEPE---N---------------KW--CLLTIILLMRALDPLLYEKETLQYFSTLKAV--------DP  307 (334)
T ss_dssp             HHHHHHHHHHHHHCTT---C---------------HH--HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--------CG
T ss_pred             hhHHHHHHHHHHHHhh---C---------------ch--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------Cc
Confidence            9999999998887765   1               11  3456889999999999999999999999998        58


Q ss_pred             hHHHHHHHHHHHHHHhhc
Q 013549          320 KVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       320 ~va~~l~nLa~ly~~qG~  337 (441)
                      .-+..+.+|+..+.-+.+
T Consensus       308 ~~~~y~~~L~~~~~~e~~  325 (334)
T d1dcea1         308 MRAAYLDDLRSKFLLENS  325 (334)
T ss_dssp             GGHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhHhhH
Confidence            888899999998875443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.7e-11  Score=99.08  Aligned_cols=116  Identities=13%  Similarity=0.115  Sum_probs=93.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|..+..+|+|++|+.+|+++|...+....+..++|.+|..+|+|++|++.|++||++-....        .     ...
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~--------~-----~~~   76 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR--------E-----DYR   76 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--------T-----CHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH--------H-----HHH
Confidence            588888999999999999999997777778889999999999999999999999999942211        1     111


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly  332 (441)
                      ....++.++|.++..+++|++|.++|++++..      ..+|++...+..+..+.
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~------~~~~~~~~~l~~~~k~l  125 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE------HRTPDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHH
Confidence            12347889999999999999999999999864      46777776666554443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.25  E-value=1.1e-10  Score=101.20  Aligned_cols=128  Identities=13%  Similarity=0.098  Sum_probs=97.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCC------------chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCC
Q 013549          199 GLVELAHGNLESAESFFKGLQEEEGC------------TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMN  266 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~~~~------------~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~  266 (441)
                      |..++.+|+|++|+..|++++...+.            ...+..++|.+|..+|+|++|...|+++|.+..+...  ...
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~--~~~   93 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE--LNQ   93 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC--TTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc--ccc
Confidence            66677899999999999999982111            1133467899999999999999999999999654322  111


Q ss_pred             CccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549          267 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA  336 (441)
Q Consensus       267 ~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG  336 (441)
                           +  .......+++++|.+|..+|+|++|.+.|++|+++..+..| ..+.....+..++.-+...|
T Consensus        94 -----~--~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          94 -----D--EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             -----T--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHHHHHH
T ss_pred             -----c--ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHHHHcC
Confidence                 0  11123346889999999999999999999999999988776 55777777777776665544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.2e-11  Score=107.83  Aligned_cols=111  Identities=20%  Similarity=0.138  Sum_probs=83.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549          197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE  276 (441)
Q Consensus       197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~  276 (441)
                      ..|.+|..+|+|++|+..|++|+...+....+..++|.++..+|+|++|+..|++||........ .+...+|... ...
T Consensus        41 nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~-~~~~~~~~~~-~~~  118 (192)
T d1hh8a_          41 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL-IDYKILGLQF-KLF  118 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE-EECGGGTBCC-EEE
T ss_pred             HHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCch-HHHHHhhhhc-ccc
Confidence            35788889999999999999999977778888899999999999999999999999986311100 0001111100 011


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549          277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e  311 (441)
                        ...++.|+|.+|..+|+|++|++.|.+|+.+..
T Consensus       119 --~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_         119 --ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             --hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence              123578999999999999999999999987743

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.2e-10  Score=96.27  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=90.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|..+..+|+|++|+.+|+++|...+..+.+..++|.+|..+|+|++|+..|++++.+   ...                
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~----------------   69 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPD----------------   69 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh---ccc----------------
Confidence            4666789999999999999999987778888899999999999999999999999998   111                


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCL  328 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nL  328 (441)
                       ...++.++|.+|..+|+|++|+..|++++.     +-|++|.+...+.++
T Consensus        70 -~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          70 -WGKGYSRKAAALEFLNRFEEAKRTYEEGLK-----HEANNPQLKEGLQNM  114 (117)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TCTTCHHHHHHHHHH
T ss_pred             -hhhHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHH
Confidence             124689999999999999999999999996     457888777666544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.2e-10  Score=97.77  Aligned_cols=101  Identities=12%  Similarity=0.169  Sum_probs=88.1

Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      -+.|..+..+|+|++|+.+|.+||++   ..     .            ...++.|+|.+|..+|+|++|++.|++|+.+
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~---~p-----~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   67 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKEL---DP-----T------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh---Cc-----c------------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence            46788999999999999999999998   11     1            1246899999999999999999999999999


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          310 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       310 ~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      ..+.. ..|+..+.++.++|.++..++++++|      ...|++++..
T Consensus        68 ~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A------~~~~~kal~~  108 (128)
T d1elra_          68 GRENR-EDYRQIAKAYARIGNSYFKEEKYKDA------IHFYNKSLAE  108 (128)
T ss_dssp             HHHST-TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred             CcccH-HHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHhc
Confidence            77755 45788999999999999999999987      8899999875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.6e-10  Score=95.31  Aligned_cols=118  Identities=12%  Similarity=0.038  Sum_probs=93.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|..+..+|+|++|+.+|++++...+.......++|.++..+|++++|+..|++||++   ...                
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~----------------   76 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKK----------------   76 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT----------------
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---ccc----------------
Confidence            4667789999999999999999977777788899999999999999999999999998   111                


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS  341 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA  341 (441)
                       ...++.++|.+|..+|+|++|...|++++.+     .|++|.+-..+..+-. ...++++++|
T Consensus        77 -~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~~~~~~l~~~~~-~~~~~~~~~a  133 (159)
T d1a17a_          77 -YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKYQECNK-IVKQKAFERA  133 (159)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence             1346899999999999999999999999986     5677765544432221 2233445554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=7.9e-11  Score=103.94  Aligned_cols=94  Identities=14%  Similarity=0.107  Sum_probs=73.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|..+..+|+|++|+.+|++++...|..+.+..++|.+|...|+|++|+..|++||++   .     +.           
T Consensus        10 ~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l---~-----p~-----------   70 (201)
T d2c2la1          10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---D-----GQ-----------   70 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---C-----TT-----------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh---C-----CC-----------
Confidence            4677778888888888888888876777777788888888888888888888888876   1     11           


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e  311 (441)
                       ...++.+||.+|..+|+|++|+..|++|+.+.-
T Consensus        71 -~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          71 -SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence             124577888888888888888888888888753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.1e-10  Score=101.09  Aligned_cols=117  Identities=13%  Similarity=0.098  Sum_probs=88.3

Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      ...|..+..+|+|++|+.+|++||.+......     ...............+++|+|.+|..+|+|++|+.++++||.+
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~-----~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESS-----FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-----CCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc-----cchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            35588889999999999999999998421111     0000000112233446789999999999999999999999988


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549          310 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE  369 (441)
Q Consensus       310 ~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~  369 (441)
                              +|.-..++.++|.+|..+|+|++|      ...|++|+++    .|+++.+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A------~~~~~~al~l----~P~n~~~~  133 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELA------RADFQKVLQL----YPNNKAAK  133 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH----CSSCHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHH------HHHHHHHHHh----CCCCHHHH
Confidence                    466677899999999999999987      8999999887    35566544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.8e-10  Score=101.55  Aligned_cols=83  Identities=13%  Similarity=0.011  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHH
Q 013549          169 ADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKF  248 (441)
Q Consensus       169 ~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~l  248 (441)
                      +++++..+.+.....+..     ..+....|.+|...|+|++|+..|++|+...+....+..++|.+|..+|+|++|+..
T Consensus        20 ~~~Ai~~~~kal~~~p~~-----~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~   94 (201)
T d2c2la1          20 YPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN   94 (201)
T ss_dssp             HHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC-----HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            445555555544322221     222334688899999999999999999997777777888999999999999999999


Q ss_pred             HHHHHHHH
Q 013549          249 YQKVIEVL  256 (441)
Q Consensus       249 y~rAL~i~  256 (441)
                      |++|+++.
T Consensus        95 ~~~al~l~  102 (201)
T d2c2la1          95 LQRAYSLA  102 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999984

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1e-09  Score=96.57  Aligned_cols=128  Identities=17%  Similarity=0.137  Sum_probs=95.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccC-----Cc----------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhccc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEG-----CT----------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF  262 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~-----~~----------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~  262 (441)
                      .|..+..+|+|++|+.+|++++...+     ..          ..+..++|.+|..+|+|++|+..+++||.+   .   
T Consensus        19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~---~---   92 (170)
T d1p5qa1          19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL---D---   92 (170)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C---
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc---c---
Confidence            47778899999999999999998111     00          123356899999999999999999999998   1   


Q ss_pred             CCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhh
Q 013549          263 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS  342 (441)
Q Consensus       263 ~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~  342 (441)
                        +.            .+.++.++|.+|..+|+|++|+..|++|+.+     .|+||.+...   |+.++..+.++.+. 
T Consensus        93 --p~------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~~~~~~---l~~~~~~~~~~~~~-  149 (170)
T d1p5qa1          93 --SN------------NEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAKTQ---LAVCQQRIRRQLAR-  149 (170)
T ss_dssp             --TT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHH---HHHHHHHHHHHHHH-
T ss_pred             --cc------------chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHHHHHHHH-
Confidence              11            1357899999999999999999999999986     5777776554   55666666655543 


Q ss_pred             hhHHHHHHHHHHHHHh
Q 013549          343 ALLIQEGLYRRALEFL  358 (441)
Q Consensus       343 ~~~~Ae~ly~rAL~i~  358 (441)
                          ...+|++.++..
T Consensus       150 ----e~~~~~~~f~~~  161 (170)
T d1p5qa1         150 ----EKKLYANMFERL  161 (170)
T ss_dssp             ----HHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHH
Confidence                134555555444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.08  E-value=5.4e-10  Score=91.62  Aligned_cols=93  Identities=22%  Similarity=0.082  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ....|..+..+|+|++|+..|++++.+.                  |+  ...++++||.+|..+|++++|+..|++|+.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~   78 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE------------------PE--REEAWRSLGLTQAENEKDGLAIIALNHARM   78 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc------------------cc--cchhhhhhhhhhhhhhhHHHhhcccccccc
Confidence            4667888999999999999999999881                  11  135689999999999999999999999999


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHH
Q 013549          309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL  355 (441)
Q Consensus       309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL  355 (441)
                      +        +|+-..++.+||.+|..+|++++|      ...++|.|
T Consensus        79 ~--------~p~~~~a~~~la~~y~~~g~~~~A------~~~l~~~l  111 (112)
T d1hxia_          79 L--------DPKDIAVHAALAVSHTNEHNANAA------LASLRAWL  111 (112)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred             c--------ccccccchHHHHHHHHHCCCHHHH------HHHHHHHh
Confidence            8        577778999999999999999987      78888875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.4e-10  Score=93.49  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=85.4

Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      ..-|..+..+|+|++|+.+|+++|.+   .     +.            ...++.++|.+|..+|+|++|+..|++++.+
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~---~-----p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKL---D-----PH------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH---C-----TT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc---C-----Cc------------chhhhhcccccccccccccccchhhhhHHHh
Confidence            34577888999999999999999988   1     11            1246789999999999999999999999987


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhh
Q 013549          310 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV  372 (441)
Q Consensus       310 ~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l  372 (441)
                      .        |.....+.++|.+|..+|++++|      ...|++++++    .|++|.+...+
T Consensus        67 ~--------p~~~~~~~~~g~~~~~~~~~~~A------~~~~~~a~~~----~p~~~~~~~~l  111 (117)
T d1elwa_          67 K--------PDWGKGYSRKAAALEFLNRFEEA------KRTYEEGLKH----EANNPQLKEGL  111 (117)
T ss_dssp             C--------TTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTT----CTTCHHHHHHH
T ss_pred             c--------cchhhHHHHHHHHHHHccCHHHH------HHHHHHHHHh----CCCCHHHHHHH
Confidence            4        44456799999999999999987      8999999865    35666655444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.07  E-value=3.6e-10  Score=92.69  Aligned_cols=90  Identities=22%  Similarity=0.089  Sum_probs=80.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE  277 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~  277 (441)
                      .|+.+..+|+|++|+.+|++++...+....+...+|.++..+|++++|+..|++||++   .               |+ 
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~---------------p~-   82 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---D---------------PK-   82 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C---------------TT-
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc---c---------------cc-
Confidence            5888889999999999999999977778888899999999999999999999999998   1               11 


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549          278 VALAATFALGQLEAHMGNFGDAEEILTRTL  307 (441)
Q Consensus       278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL  307 (441)
                       ...++.+||.+|..+|++++|.+.++|.|
T Consensus        83 -~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 -DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence             13468999999999999999999999986

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.06  E-value=7.5e-10  Score=97.00  Aligned_cols=116  Identities=16%  Similarity=0.089  Sum_probs=87.9

Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      ...|..+...|+|.+|...|++||.+......     .........+...+..++|+|.+|..+|+|++|+..++++|.+
T Consensus        19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~-----~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG-----LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-----CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-----cchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            34577888999999999999999998522111     1000011122334456789999999999999999999999987


Q ss_pred             HHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcch
Q 013549          310 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV  368 (441)
Q Consensus       310 ~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~  368 (441)
                              +|.-..++.++|.+|..+|+|++|      +..|++++++    .|+++.+
T Consensus        94 --------~p~~~~a~~~~~~~~~~l~~~~~A------~~~~~~al~l----~P~n~~~  134 (168)
T d1kt1a1          94 --------DSANEKGLYRRGEAQLLMNEFESA------KGDFEKVLEV----NPQNKAA  134 (168)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHS----CTTCHHH
T ss_pred             --------ccchHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHh----CCCCHHH
Confidence                    667778899999999999999987      8999999876    3455543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.8e-09  Score=93.28  Aligned_cols=93  Identities=14%  Similarity=0.003  Sum_probs=80.6

Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549          231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT  310 (441)
Q Consensus       231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~  310 (441)
                      ..|+.+..+|+|++|+..|++||++   ...                 ...+++++|.+|..+|++++|+..|++||++ 
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~---~p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-   73 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIEL---NPS-----------------NAIYYGNRSLAYLRTECYGYALGDATRAIEL-   73 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH---STT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHcCCHHHHHHHhhhcccc---chh-----------------hhhhhhhhHHHHHhccccchHHHHHHHHHHH-
Confidence            3477889999999999999999998   111                 1346789999999999999999999999998 


Q ss_pred             HHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          311 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       311 e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                             .|....++.++|.+|..+|++++|      ...|++++.+
T Consensus        74 -------~p~~~~a~~~~g~~~~~~g~~~eA------~~~~~~a~~~  107 (159)
T d1a17a_          74 -------DKKYIKGYYRRAASNMALGKFRAA------LRDYETVVKV  107 (159)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred             -------cccchHHHHHHHHHHHHcCCHHHH------HHHHHHHHHc
Confidence                   366667799999999999999987      8899999887

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=9.9e-11  Score=120.19  Aligned_cols=204  Identities=11%  Similarity=0.005  Sum_probs=108.7

Q ss_pred             ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549           78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL  157 (441)
Q Consensus        78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~  157 (441)
                      .+|++++|   |++++.+        +|..+...+..+.+..  ..|..+++.+++..+..... ........-+..++ 
T Consensus        32 ~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw~--~~y~~~ie~~r~~~k~~~~~-~~~~~~~~~~~~l~-   96 (497)
T d1ya0a1          32 SRQALQDL---YQKMLVT--------DLEYALDKKVEQDLWN--HAFKNQITTLQGQAKNRANP-NRSEVQANLSLFLE-   96 (497)
T ss_dssp             HHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHHH--HHTHHHHHHHHHHHSCSSCT-TTTHHHHHHHHHHH-
T ss_pred             HHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHHH--HHHHHHHHHHHHhcccccCc-cHHHHHHHHHHHHH-
Confidence            35778776   8888753        5666666665554442  23777888887765433211 11100111112222 


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                            ++...|+.++..+.+.....+....     .....|.++..+|++++|...|++++....  ..+..++|.++.
T Consensus        97 ------~a~~~Y~~ai~~l~~~~~l~~~~~~-----~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~  163 (497)
T d1ya0a1          97 ------AASGFYTQLLQELCTVFNVDLPCRV-----KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIAR  163 (497)
T ss_dssp             ------HHHHHHHHHHHHHTC------------------------------------CCHHHHHHH--HHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHCCChhhHH-----HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHH
Confidence                  3344445555444333321111111     112457778889999999999998887322  246678899999


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      .+|+|++|+.+|++|+.+.         |..|           .++++||.+|..+|++.+|..+|.|||.+.       
T Consensus       164 ~~~~~~~A~~~y~~A~~l~---------P~~~-----------~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-------  216 (497)
T d1ya0a1         164 YRNQTSQAESYYRHAAQLV---------PSNG-----------QPYNQLAILASSKGDHLTTIFYYCRSIAVK-------  216 (497)
T ss_dssp             HTTCHHHHHHHHHHHHHHC---------TTBS-----------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-------
T ss_pred             HcccHHHHHHHHHHHHHHC---------CCch-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------
Confidence            9999999999999999981         1112           357899999999999999999999998643       


Q ss_pred             CchHHHHHHHHHHHHHHhhc
Q 013549          318 HPKVGVVLTCLALMFRNKAM  337 (441)
Q Consensus       318 HP~va~~l~nLa~ly~~qG~  337 (441)
                       |....+..||+.+|....+
T Consensus       217 -~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         217 -FPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             -BCCHHHHHHHHHHHHHHTT
T ss_pred             -CCCHHHHHHHHHHHHHhhh
Confidence             2233456666666655443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.00  E-value=3.2e-09  Score=92.90  Aligned_cols=115  Identities=14%  Similarity=0.120  Sum_probs=88.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhc---cCC------------chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhccc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEE---EGC------------TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF  262 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~---~~~------------~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~  262 (441)
                      .|..+...|+|++|..+|++++..   ...            ...+..++|.+|..+|+|++|+..|+++|.+   .   
T Consensus        21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---~---   94 (168)
T d1kt1a1          21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL---D---   94 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C---
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc---c---
Confidence            367778999999999999999971   000            0122356899999999999999999999998   1   


Q ss_pred             CCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh
Q 013549          263 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH  340 (441)
Q Consensus       263 ~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee  340 (441)
                        +.            ...++.++|.+|..+|+|++|+..|++++.+     .|++|   .+...|+.+....+++.+
T Consensus        95 --p~------------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-----~P~n~---~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          95 --SA------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNK---AARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             --TT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCH---HHHHHHHHHHHHHHHHHH
T ss_pred             --cc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHHhHHH
Confidence              11            1357899999999999999999999999976     45555   456666777766666654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.99  E-value=1.2e-09  Score=94.37  Aligned_cols=115  Identities=9%  Similarity=0.050  Sum_probs=84.4

Q ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549          232 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE  311 (441)
Q Consensus       232 ~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e  311 (441)
                      -|..+..+|+|.+|+..|++||.+......  .........  .....+.+++|+|.+|..+|+|++|++.|++||.+  
T Consensus        23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~--~~~~~~~~~--~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~--   96 (153)
T d2fbna1          23 EGNEFFKKNEINEAIVKYKEALDFFIHTEE--WDDQILLDK--KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--   96 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTT--CCCHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcchhh--hhhHHHHHh--hhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--
Confidence            366777888999999999988887422111  000000000  01123456789999999999999999999999976  


Q ss_pred             HhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcch
Q 013549          312 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV  368 (441)
Q Consensus       312 ~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~  368 (441)
                            +|.-..++.++|.+|..+|++++|      ...|++++++-    |+++.+
T Consensus        97 ------~p~~~ka~~~~g~~~~~lg~~~~A------~~~~~~al~l~----P~n~~~  137 (153)
T d2fbna1          97 ------DKNNVKALYKLGVANMYFGFLEEA------KENLYKAASLN----PNNLDI  137 (153)
T ss_dssp             ------STTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS----TTCHHH
T ss_pred             ------cchhhhhhHHhHHHHHHcCCHHHH------HHHHHHHHHhC----CCCHHH
Confidence                  577778999999999999999987      89999999883    445443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.5e-09  Score=90.93  Aligned_cols=107  Identities=11%  Similarity=0.095  Sum_probs=85.4

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH---ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA---TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA  279 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~---qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~  279 (441)
                      ..+++|++|+..|+++|...+..+.+.++||.++..   .+++.+|+.+|+++|.+   ...             |.  .
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~---~~~-------------~~--~   71 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GSK-------------EE--Q   71 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SCH-------------HH--H
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc---cCC-------------ch--H
Confidence            478999999999999999888888899999998865   56777899999998875   110             11  2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549          280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK  335 (441)
Q Consensus       280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q  335 (441)
                      ..++.+||.+|..+|+|++|+++|+++|.+     .|+|+.   .+..++.+....
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~-----~P~~~~---A~~l~~~I~~~~  119 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----EPQNNQ---AKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----CcCCHH---HHHHHHHHHHHH
Confidence            457899999999999999999999999997     366664   445555666543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=2.1e-07  Score=88.10  Aligned_cols=230  Identities=14%  Similarity=0.059  Sum_probs=155.3

Q ss_pred             hHHHHHHHHHHhhhccccCCCCCchhH----HHHHHHHHHHHHHc-------CChHHHHHHHHHHHHhhhhhhhhhHHHH
Q 013549           81 SYSQGMLVLEQCLSTQPSDGQLAESWR----GISLLAMSTLLYES-------GNYVEAIEKLQKVENFKNSILGVRVAAM  149 (441)
Q Consensus        81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~----a~~l~nLa~l~~~q-------G~y~eA~e~~~ral~i~~~~lg~~~~al  149 (441)
                      ..+++..+||+||...     +.||.+    +.-+..-+......       +.+++|...|++++......   ....+
T Consensus        31 ~~~Rv~~vyerAl~~~-----~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~---~~~l~  102 (308)
T d2onda1          31 ITKRVMFAYEQCLLVL-----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK---NMLLY  102 (308)
T ss_dssp             HHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT---CHHHH
T ss_pred             hHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCC---CHHHH
Confidence            4678999999999854     445552    22222222333333       34567777788776543211   12356


Q ss_pred             HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHH
Q 013549          150 EALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAA  229 (441)
Q Consensus       150 ~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a  229 (441)
                      ...+.++..+|+.+.+...+++++.+    .+.++   ..    .....+......|++++|..+|++++...+......
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~----~~~~~---~~----~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~  171 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAI----EDIDP---TL----VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTS----SSSCT---HH----HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHH----hcCCh---HH----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Confidence            67788889999999999998888632    11111   11    111122334578999999999999999665565666


Q ss_pred             HHHHHHH-HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549          230 LSYGEYL-HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT  308 (441)
Q Consensus       230 ~~~a~~~-~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~  308 (441)
                      ..++.+. +..|+.+.|..+|++++...   ..     .            ......++..+..+|++++|..+|++|+.
T Consensus       172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~---p~-----~------------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         172 VTAALMEYYCSKDKSVAFKIFELGLKKY---GD-----I------------PEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHH---TT-----C------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhh---hh-----h------------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6677654 45799999999999999873   11     1            13457889999999999999999999986


Q ss_pred             HHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549          309 KTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA  360 (441)
Q Consensus       309 i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~  360 (441)
                      .     .+.+|. ...........-...|+.+.+      ..+++|+.+++..
T Consensus       232 ~-----~~~~~~~~~~iw~~~~~fE~~~G~~~~~------~~~~~r~~~~~~~  273 (308)
T d2onda1         232 S-----GSLPPEKSGEIWARFLAFESNIGDLASI------LKVEKRRFTAFRE  273 (308)
T ss_dssp             S-----SSSCGGGCHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHTTT
T ss_pred             h-----CCCChHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHCcc
Confidence            3     234453 344556666777788988776      7899999999853

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.92  E-value=6.2e-09  Score=90.73  Aligned_cols=114  Identities=13%  Similarity=0.052  Sum_probs=86.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhc----------------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEE----------------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~----------------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      .|..+...|+|++|+..|++++..                .+.......++|.++..+|+|++|+..|.+||++   .  
T Consensus        33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---~--  107 (169)
T d1ihga1          33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---D--  107 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh---h--
Confidence            356667899999999999999871                0111234567899999999999999999999987   1  


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE  339 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~e  339 (441)
                                   |.  ...++.++|.+|..+|+|++|+..|++|+++     .|+++.+...   |+.++....++.
T Consensus       108 -------------p~--~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~~~~~~---l~~~~~~l~~~~  162 (169)
T d1ihga1         108 -------------PS--NTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAE---LLKVKQKIKAQK  162 (169)
T ss_dssp             -------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHH---HHHHHHHHHHHH
T ss_pred             -------------hh--hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHHHHHH
Confidence                         11  1346899999999999999999999999986     5677766444   455555544443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.2e-09  Score=83.83  Aligned_cols=89  Identities=12%  Similarity=0.131  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549          227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT  306 (441)
Q Consensus       227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA  306 (441)
                      ...+.+|.++..+|+|.+|++.|++||++......    ..       +.  ...+++|||.+|..+|+|++|..+|++|
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~----~~-------~~--~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI----ST-------ID--KVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----CS-------SC--HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc----cC-------cc--HHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            34567899999999999999999999999532211    00       11  2457899999999999999999999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549          307 LTKTEELFGSHHPKVGVVLTCLALMFRNKA  336 (441)
Q Consensus       307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG  336 (441)
                      |++     -|+||   .+++||+.+....+
T Consensus        73 L~l-----~P~~~---~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          73 LEL-----DPEHQ---RANGNLKYFEYIMA   94 (95)
T ss_dssp             HHH-----CTTCH---HHHHHHHHHHHHHH
T ss_pred             HHh-----CcCCH---HHHHHHHHHHHHhC
Confidence            997     36665   57778877665443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.91  E-value=6.1e-09  Score=89.81  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=85.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccC------Cc----------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          198 KGLVELAHGNLESAESFFKGLQEEEG------CT----------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~~~~------~~----------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                      .|..+..+|+|++|+..|++++...+      ..          ..+..|+|.+|..+|+|++|+..|++||++   .  
T Consensus        23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~---~--   97 (153)
T d2fbna1          23 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI---D--   97 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc---c--
Confidence            46777899999999999999998110      00          123357899999999999999999999998   1  


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549          262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK  335 (441)
Q Consensus       262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q  335 (441)
                         +.            .+.++.++|.+|..+|+|++|...|++++.+.     |+|+.+   ..+++.+....
T Consensus        98 ---p~------------~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~n~~~---~~~l~~~~~kl  148 (153)
T d2fbna1          98 ---KN------------NVKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNNLDI---RNSYELCVNKL  148 (153)
T ss_dssp             ---TT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTCHHH---HHHHHHHHHHH
T ss_pred             ---ch------------hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHH---HHHHHHHHHHH
Confidence               11            13578999999999999999999999999883     566555   55566666544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=3e-08  Score=86.20  Aligned_cols=141  Identities=16%  Similarity=0.115  Sum_probs=101.7

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcch
Q 013549          106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK  185 (441)
Q Consensus       106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~  185 (441)
                      .++..+...|..++..|+|.+|+..|++++.+.+.....               ....       ...            
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~---------------~~~~-------~~~------------   70 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA---------------AEDA-------DGA------------   70 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH---------------SCHH-------HHG------------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh---------------hhhH-------HHH------------
Confidence            355667889999999999999999999998765443211               0000       000            


Q ss_pred             hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549          186 TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM  265 (441)
Q Consensus       186 ~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~  265 (441)
                      .............|.++...|+|++|+..|.++|...+....+..++|.+|..+|+|++|+..|++|+++   ...    
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l---~p~----  143 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APE----  143 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT----
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---CCC----
Confidence            0001111122235788889999999999999999987778888899999999999999999999999998   111    


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHH
Q 013549          266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE  300 (441)
Q Consensus       266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe  300 (441)
                            +       ..+...|+.++....++.+++
T Consensus       144 ------n-------~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         144 ------D-------KAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             ------C-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------C-------HHHHHHHHHHHHHHHHHHHHH
Confidence                  1       124567888887777776664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=8.3e-09  Score=86.26  Aligned_cols=98  Identities=14%  Similarity=0.025  Sum_probs=74.7

Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549          230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK  309 (441)
Q Consensus       230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i  309 (441)
                      .++++.+..+++|++|++.|++||.+   .     +.            ...+++|+|.++...++.++    +++|+.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~-----p~------------~~~~~~n~a~~L~~s~~~~d----~~~Ai~~   58 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA---G-----SV------------SKSTQFEYAWCLVRTRYNDD----IRKGIVL   58 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---S-----CC------------CHHHHHHHHHHHTTSSSHHH----HHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh---C-----CC------------CHHHHHHHHHHHHHhcchHH----HHHHHHH
Confidence            45667778999999999999999998   1     11            13578999999987665543    3444555


Q ss_pred             HHHhhCCCC-chHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          310 TEELFGSHH-PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       310 ~e~~lG~~H-P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      +++.+-.+. |....++.+||.+|..+|+|++|      +..|+++|++
T Consensus        59 l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A------~~~~~~aL~~  101 (122)
T d1nzna_          59 LEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA------LKYVRGLLQT  101 (122)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred             HHHHHhccCCchHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHh
Confidence            555544433 55567999999999999999987      8999999998

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.85  E-value=1.1e-06  Score=80.40  Aligned_cols=221  Identities=15%  Similarity=0.195  Sum_probs=144.5

Q ss_pred             HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 013549           63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~----qG~y~eA~e~~~ral~i~  138 (441)
                      ..+++++..+.+    +++|.+|+.+|+++.+.     |  +   +.++.+||.+|..    .-++.+|...++++....
T Consensus         3 ~~~~~lG~~~~~----~~d~~~A~~~~~kAa~~-----g--~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_           3 KELVGLGAKSYK----EKDFTQAKKYFEKACDL-----K--E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   68 (265)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHC-----C--C---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence            478899888733    57999999999999753     2  2   3568899999987    668999999999875443


Q ss_pred             hhhhhhhHHHHHHHHHHHHhc----CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH----cCCHHH
Q 013549          139 NSILGVRVAAMEALAGLYLQL----GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA----HGNLES  210 (441)
Q Consensus       139 ~~~lg~~~~al~~La~l~~~~----G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~----qG~y~e  210 (441)
                      ..      .+..+|+.++...    .++..|..+++++.    ....          ..+....+..+..    ......
T Consensus        69 ~~------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~----~~g~----------~~a~~~l~~~~~~~~~~~~~~~~  128 (265)
T d1ouva_          69 YS------NGCHLLGNLYYSGQGVSQNTNKALQYYSKAC----DLKY----------AEGCASLGGIYHDGKVVTRDFKK  128 (265)
T ss_dssp             CH------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH----HTTC----------HHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cc------chhhccccccccccccchhhHHHHHHHhhhh----hhhh----------hhHHHhhcccccCCCcccchhHH
Confidence            22      2455666666542    23344444444442    2221          0111123444432    555677


Q ss_pred             HHHHHHhhhhccCCchHHHHHHHHHHHHc----cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHH
Q 013549          211 AESFFKGLQEEEGCTGSAALSYGEYLHAT----RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL  286 (441)
Q Consensus       211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~q----G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nL  286 (441)
                      |...+.+.....  ......+++.++...    .+...+..+++++.+.     +                 ...+..+|
T Consensus       129 a~~~~~~~~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-----g-----------------~~~A~~~l  184 (265)
T d1ouva_         129 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----K-----------------DSPGCFNA  184 (265)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----------------CHHHHHHH
T ss_pred             HHHHhhhhhccc--ccchhhhhhhhhccCCCcccccccchhhhhccccc-----c-----------------ccccccch
Confidence            777777766632  234556777777763    4555666666666543     1                 12467899


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hhchhhhhhhHHHHHHHHHHHHH
Q 013549          287 GQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       287 g~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      |.+|..    ..++++|+.+|++|.+.       .||   ..+.+||.+|..    ..++++|      ...|++|.+.
T Consensus       185 g~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~~LG~~y~~G~g~~~n~~~A------~~~~~kAa~~  247 (265)
T d1ouva_         185 GNMYHHGEGATKNFKEALARYSKACEL-------ENG---GGCFNLGAMQYNGEGVTRNEKQA------IENFKKGCKL  247 (265)
T ss_dssp             HHHHHHTCSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHTTSSSSCCSTTH------HHHHHHHHHH
T ss_pred             hhhcccCcccccchhhhhhhHhhhhcc-------cCH---HHHHHHHHHHHcCCCCccCHHHH------HHHHHHHHHC
Confidence            999998    77999999999999664       354   477899999985    2245554      8889988665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=8.4e-09  Score=81.99  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                      ...+||.++..+|+|++|.+.|++||.+.... ...++..+.+++|||.+|..+|++++|      ...|++||++    
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A------~~~y~~aL~l----   75 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKA------LLLTKKLLEL----   75 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH----
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHH------HHHHHHHHHh----
Confidence            35799999999999999999999999998764 345678899999999999999999997      8999999998    


Q ss_pred             CCCCcchHhhhccHHHH
Q 013549          362 PLESEGVETKVDRTDIV  378 (441)
Q Consensus       362 ~~~~~~~~~~l~nl~~~  378 (441)
                      .|+|+.   ..+|++.+
T Consensus        76 ~P~~~~---a~~Nl~~~   89 (95)
T d1tjca_          76 DPEHQR---ANGNLKYF   89 (95)
T ss_dssp             CTTCHH---HHHHHHHH
T ss_pred             CcCCHH---HHHHHHHH
Confidence            366664   55565444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.83  E-value=4e-09  Score=90.51  Aligned_cols=120  Identities=12%  Similarity=0.100  Sum_probs=79.0

Q ss_pred             HHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC----------HHHHHHHHH
Q 013549          235 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN----------FGDAEEILT  304 (441)
Q Consensus       235 ~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~----------y~eAe~l~~  304 (441)
                      .|.++++|++|+..|++|+++        +|+            ...+++++|.++..+++          +++|+..|+
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~   65 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPL------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFE   65 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTT------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCc------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            356789999999999999998        111            13468899999886544          466666666


Q ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh-----hhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHH
Q 013549          305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS-----SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA  379 (441)
Q Consensus       305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA-----~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~  379 (441)
                      +||.|        .|+-..+++|||.+|..+|++...     ..|..|...|++|+++-    |+++   ....+++...
T Consensus        66 kAl~l--------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~----P~~~---~~~~~L~~~~  130 (145)
T d1zu2a1          66 EALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ----PDNT---HYLKSLEMTA  130 (145)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC----TTCH---HHHHHHHHHH
T ss_pred             HHHHh--------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC----CCHH---HHHHHHHHHH
Confidence            66655        466667899999999999975321     11333455555555542    3333   3445566666


Q ss_pred             HHhccHHHHH
Q 013549          380 LARGGYAEAL  389 (441)
Q Consensus       380 ~~~g~yaeal  389 (441)
                      .+.+.|.|+.
T Consensus       131 ka~~~~~e~~  140 (145)
T d1zu2a1         131 KAPQLHAEAY  140 (145)
T ss_dssp             THHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=3.1e-09  Score=91.21  Aligned_cols=116  Identities=9%  Similarity=0.045  Sum_probs=82.9

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----------ccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA----------TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN  272 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----------qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~  272 (441)
                      ...++|++|+..|++++...|....+..++|.++..          ++++++|+..|++||+|   .             
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~-------------   71 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---D-------------   71 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---C-------------
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---c-------------
Confidence            357789999999999999888888888899988764          46678999999999988   1             


Q ss_pred             cchhHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchh
Q 013549          273 MALEEVALAATFALGQLEAHMGN----FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE  339 (441)
Q Consensus       273 ~~~~~~~~~al~nLg~ly~~qG~----y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~e  339 (441)
                        |+  ...++++||.+|..+|+    ..++...|++|+..+++.+- -+|.-.....+|+......+.+.
T Consensus        72 --P~--~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~-l~P~~~~~~~~L~~~~ka~~~~~  137 (145)
T d1zu2a1          72 --PK--KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-EQPDNTHYLKSLEMTAKAPQLHA  137 (145)
T ss_dssp             --TT--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHTHHHHHH
T ss_pred             --ch--hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc-cCCCHHHHHHHHHHHHHHHHHHH
Confidence              11  13468999999999875    34555556666666665532 12444456677777765555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=1.3e-07  Score=89.70  Aligned_cols=197  Identities=11%  Similarity=0.032  Sum_probs=142.1

Q ss_pred             hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549           79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ  158 (441)
Q Consensus        79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~  158 (441)
                      .+.+++|..+|++|+.+.    .+.+   .......+.++..+|++++|...|++++...+...   ...+..++.+...
T Consensus        77 ~~~~~~a~~i~~ral~~~----~p~~---~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~---~~~w~~~~~~~~~  146 (308)
T d2onda1          77 KLFSDEAANIYERAISTL----LKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTT----TTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT---HHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHc----CCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHH
Confidence            455789999999999743    2333   34677788999999999999999999987665421   2245667777888


Q ss_pred             cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHH-HHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549          159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGL-VELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH  237 (441)
Q Consensus       159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl-~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~  237 (441)
                      .|..+.|..++++++.    ..+..+   ....     ..+. .+...|+++.|..+|++++...+..+.....|+.++.
T Consensus       147 ~~~~~~ar~i~~~al~----~~~~~~---~~~~-----~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         147 AEGIKSGRMIFKKARE----DARTRH---HVYV-----TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHCHHHHHHHHHHHHT----STTCCT---HHHH-----HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHH----hCCCcH---HHHH-----HHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            8898888888887752    222211   1111     1122 2335799999999999999977777788899999999


Q ss_pred             HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549          238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL  313 (441)
Q Consensus       238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~  313 (441)
                      .+|++++|..+|++|+...   ..       .     |+. ...............|+.+.+..+++|+.+++.+.
T Consensus       215 ~~g~~~~aR~~fe~ai~~~---~~-------~-----~~~-~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         215 HLNEDNNTRVLFERVLTSG---SL-------P-----PEK-SGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHSS---SS-------C-----GGG-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HcCChHHHHHHHHHHHHhC---CC-------C-----hHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            9999999999999998751   10       0     111 11223456667778899999999999998876433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.50  E-value=4.4e-06  Score=76.28  Aligned_cols=215  Identities=15%  Similarity=0.144  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC----CcchhHHHHHHHHHHHHhcCCCcc
Q 013549          109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG----QDDTSSVVADKCLQLCEKHKPENY  184 (441)
Q Consensus       109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G----~~~~A~~l~~~~L~i~~~~~~~~~  184 (441)
                      ..+.+||..+..+|+|.+|++.|+++.+...      ..+..+|+.+|..-.    ++..+..++..+.    ...  . 
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~----~~~--~-   69 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKE------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC----DLN--Y-   69 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH----HTT--C-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCcchhHHHHHHhhcccc----ccc--c-
Confidence            4789999999999999999999999965432      236778888887622    3344444443331    111  0 


Q ss_pred             hhhhhhHhHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHH
Q 013549          185 KTYGAVNSRANAVKGLVELA----HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVL  256 (441)
Q Consensus       185 ~~~~~l~~~a~al~gl~~~~----qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~  256 (441)
                             ..+....+..+..    ..++++|...|+++.....  ..+...++..+..    +....+|...+.+.... 
T Consensus        70 -------~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~-  139 (265)
T d1ouva_          70 -------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-  139 (265)
T ss_dssp             -------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-
T ss_pred             -------cchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc-
Confidence                   1112223444332    5678999999999987432  2334445544443    45666777777665543 


Q ss_pred             HhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549          257 AEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG----NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF  332 (441)
Q Consensus       257 ~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG----~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly  332 (441)
                          +                 ...+..+||..|....    +...+..+++++.       -..|   ..++.+||.+|
T Consensus       140 ----~-----------------~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~-------~~g~---~~A~~~lg~~y  188 (265)
T d1ouva_         140 ----N-----------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-------DLKD---SPGCFNAGNMY  188 (265)
T ss_dssp             ----T-----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-------HTTC---HHHHHHHHHHH
T ss_pred             ----c-----------------ccchhhhhhhhhccCCCcccccccchhhhhccc-------cccc---cccccchhhhc
Confidence                1                 1235689999998744    4444444444443       2234   35788899999


Q ss_pred             HH----hhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH----hccHHHHHHHh
Q 013549          333 RN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQ  392 (441)
Q Consensus       333 ~~----qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~----~g~yaeal~~~  392 (441)
                      ..    ..++++|      +.+|++|.+.      +++   ....|++.+|..    ..++.+|+.++
T Consensus       189 ~~g~~~~~d~~~A------~~~~~~aa~~------g~~---~a~~~LG~~y~~G~g~~~n~~~A~~~~  241 (265)
T d1ouva_         189 HHGEGATKNFKEA------LARYSKACEL------ENG---GGCFNLGAMQYNGEGVTRNEKQAIENF  241 (265)
T ss_dssp             HHTCSSCCCHHHH------HHHHHHHHHT------TCH---HHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred             ccCcccccchhhh------hhhHhhhhcc------cCH---HHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence            87    3455544      8889888664      333   355688998863    11455555544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.32  E-value=5.4e-06  Score=73.10  Aligned_cols=100  Identities=14%  Similarity=-0.079  Sum_probs=81.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhh---ccC-----C--------------chHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549          198 KGLVELAHGNLESAESFFKGLQE---EEG-----C--------------TGSAALSYGEYLHATRNFLLAKKFYQKVIEV  255 (441)
Q Consensus       198 ~gl~~~~qG~y~eAe~l~~~aL~---~~~-----~--------------~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i  255 (441)
                      .|.....+|++++|...|.++|.   +..     .              ...+..+++.++..+|+|++|+.+++++|++
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~   96 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE   96 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            46666789999999999999998   110     0              1134466788999999999999999999998


Q ss_pred             HHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549          256 LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH  317 (441)
Q Consensus       256 ~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~  317 (441)
                      -        +.            .-.+..+|+.+|..+|++++|...|+++.....+-+|-+
T Consensus        97 ~--------P~------------~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          97 H--------PY------------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             S--------TT------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             C--------Cc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            1        11            113578999999999999999999999999999999986

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.29  E-value=8.3e-06  Score=71.88  Aligned_cols=130  Identities=15%  Similarity=0.002  Sum_probs=92.2

Q ss_pred             chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549          104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN  183 (441)
Q Consensus       104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~  183 (441)
                      +.+....+.+.|..+...|++++|++.|.+|+.+.+..+-..             .....-+.....+.   ..      
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~-------------~~~~~w~~~~r~~l---~~------   64 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-------------LRDFQFVEPFATAL---VE------   64 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-------------GTTSTTHHHHHHHH---HH------
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc-------------CcchHHHHHHHHHH---HH------
Confidence            345677889999999999999999999999998875321100             01111111111111   00      


Q ss_pred             chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549          184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD  261 (441)
Q Consensus       184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~  261 (441)
                            ....+....+.++..+|+|++|..++++++..++....+...++.+|..+|++++|+..|+++.....+..+
T Consensus        65 ------~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG  136 (179)
T d2ff4a2          65 ------DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG  136 (179)
T ss_dssp             ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Confidence                  001111124556678999999999999999988888888899999999999999999999999998755444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.23  E-value=3.4e-06  Score=79.17  Aligned_cols=124  Identities=15%  Similarity=0.007  Sum_probs=99.0

Q ss_pred             HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549          203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA  282 (441)
Q Consensus       203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a  282 (441)
                      +.+|++++|+..|+++++..|.....-..++.+|+.+|++++|+..|++++++.                  |+  ....
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~------------------P~--~~~~   66 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF------------------PE--YLPG   66 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------GG--GHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CC--cHHH
Confidence            479999999999999999888888888999999999999999999999999881                  11  1234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549          283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK  359 (441)
Q Consensus       283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~  359 (441)
                      ..+++.++...++.+++..-       ..+..=..+|.-...+...+.++..+|++++|      +.+++++++..-
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~-------~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A------~~~~~~a~e~~p  130 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQG-------AATAKVLGENEELTKSLVSFNLSMVSQDYEQV------SELALQIEELRQ  130 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTS-------CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhccccHHHHHH-------hhhhhcccCchHHHHHHHHHHHHHhCCCHHHH------HHHHHHHHhcCC
Confidence            56888888776666554333       33333345677777888899999999999987      899999988863

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.95  E-value=2.5e-05  Score=73.01  Aligned_cols=114  Identities=12%  Similarity=0.078  Sum_probs=81.4

Q ss_pred             HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549          237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS  316 (441)
Q Consensus       237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~  316 (441)
                      ..+|++++|+..|+++++.   .               |.  ......+||++|+.+|+|++|...|++++++       
T Consensus         7 L~~G~l~eAl~~l~~al~~---~---------------P~--d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-------   59 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKA---S---------------PK--DASLRSSFIELLCIDGDFERADEQLMQSIKL-------   59 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHT---C---------------TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             HHCCCHHHHHHHHHHHHHH---C---------------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence            4689999999999999987   1               11  1345789999999999999999999999986       


Q ss_pred             CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc-CCCCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549          317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPLESEGVETKVDRTDIVALARGGYAEALSV  391 (441)
Q Consensus       317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~-~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~  391 (441)
                       +|+......+++.++..++..++             ++..... ..+.+|+........+.++..+|++++|...
T Consensus        60 -~P~~~~~~~~l~~ll~a~~~~~~-------------a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~  121 (264)
T d1zbpa1          60 -FPEYLPGASQLRHLVKAAQARKD-------------FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL  121 (264)
T ss_dssp             -CGGGHHHHHHHHHHHHHHHHHHH-------------HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHhccccHH-------------HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHH
Confidence             57777778888888876655433             3333322 2344555444444566677777777666554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.25  E-value=0.0011  Score=54.25  Aligned_cols=109  Identities=12%  Similarity=0.072  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHH
Q 013549          207 NLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL  286 (441)
Q Consensus       207 ~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nL  286 (441)
                      ++++|..+|+++.+...  ..+..+++.  ..+.++++|..+|++|.+.     +                 ...+..+|
T Consensus         8 d~~~A~~~~~kaa~~g~--~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-----g-----------------~~~a~~~L   61 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE--MFGCLSLVS--NSQINKQKLFQYLSKACEL-----N-----------------SGNGCRFL   61 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC--TTHHHHHHT--CTTSCHHHHHHHHHHHHHT-----T-----------------CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC--hhhhhhhcc--ccccCHHHHHHHHhhhhcc-----c-----------------chhhhhhH
Confidence            68899999999987332  223444442  3567899999999998764     2                 12467899


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hhchhhhhhhHHHHHHHHHHHHH
Q 013549          287 GQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       287 g~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      |.+|..    ..++++|.++|++|.+.       .||   .++.+||.+|..    ..++++      |..+|++|.+.
T Consensus        62 g~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~~Lg~~y~~G~gv~~d~~~------A~~~~~~Aa~~  124 (133)
T d1klxa_          62 GDFYENGKYVKKDLRKAAQYYSKACGL-------NDQ---DGCLILGYKQYAGKGVVKNEKQ------AVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHTSSSCCCHHH------HHHHHHHHHHT
T ss_pred             HHhhhhccccchhhHHHHHHHhhhhcc-------Ccc---hHHHHHHHHHHcCCccCCCHHH------HHHHHHHHHHC
Confidence            999886    56788888888888643       344   467889999976    223433      47888888654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.88  E-value=0.0034  Score=51.15  Aligned_cols=86  Identities=15%  Similarity=0.231  Sum_probs=66.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549          199 GLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA  274 (441)
Q Consensus       199 gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~  274 (441)
                      .+....+.++++|..+|+++.+..  ++.+...+|.+|..    .-++++|..+|++|.+.     +             
T Consensus        30 ~l~~~~~~~~~~a~~~~~~aa~~g--~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-----g-------------   89 (133)
T d1klxa_          30 SLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----N-------------   89 (133)
T ss_dssp             HHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T-------------
T ss_pred             hhccccccCHHHHHHHHhhhhccc--chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-----C-------------
Confidence            334456788999999999998743  34566788887765    45789999999999764     2             


Q ss_pred             hhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 013549          275 LEEVALAATFALGQLEAH----MGNFGDAEEILTRTLT  308 (441)
Q Consensus       275 ~~~~~~~al~nLg~ly~~----qG~y~eAe~l~~rAL~  308 (441)
                          ...+..+||.+|..    ..++++|..+|++|-+
T Consensus        90 ----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          90 ----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             ----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence                12357899999987    5689999999999865

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.0021  Score=52.96  Aligned_cols=76  Identities=16%  Similarity=0.181  Sum_probs=61.8

Q ss_pred             CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549           57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN  136 (441)
Q Consensus        57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~  136 (441)
                      ++|. ...--+||..+.++. .....++|+.++++++...     ++  ..-.++.+||..|+..|+|++|..+++++|.
T Consensus        31 ~~~s-~qt~F~YAw~Lv~S~-~~~d~~~gI~lLe~~~~~~-----p~--~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          31 PTAT-IQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA-----ES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             GGSC-HHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC-----GG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCC-cchHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcC-----ch--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            4455 467788998887764 6778999999999998621     22  2458999999999999999999999999999


Q ss_pred             hhhhh
Q 013549          137 FKNSI  141 (441)
Q Consensus       137 i~~~~  141 (441)
                      +.+..
T Consensus       102 ieP~n  106 (124)
T d2pqrb1         102 HERNN  106 (124)
T ss_dssp             HCTTC
T ss_pred             cCCCc
Confidence            98765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.022  Score=46.61  Aligned_cols=68  Identities=6%  Similarity=-0.023  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549          279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF  357 (441)
Q Consensus       279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i  357 (441)
                      ++.+.+++|..+.+..+.+    ..++++.+.++++- .+|. -...+.+||..|..+|+|++|      ...++++|+|
T Consensus        34 s~qt~F~YAw~Lv~S~~~~----d~~~gI~lLe~~~~-~~p~~~rd~lY~Lav~yyklgdy~~A------~~~~~~~L~i  102 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVN----DERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMA------KRYVDTLFEH  102 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHH----HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHcc
Confidence            3567888888887664442    24444555555542 2443 468999999999999999997      8899999998

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=85.63  E-value=1.3  Score=39.46  Aligned_cols=65  Identities=6%  Similarity=0.034  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549          296 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKAPP  362 (441)
Q Consensus       296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~~~  362 (441)
                      -++|...|++|+.+....+.|.||-.....-|.+..|.. .|+.++|  +..|..-|..|++.+....
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A--~~lak~afd~ai~~~d~l~  212 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA--CNLAKQAFDEAIAELDTLG  212 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhcCC
Confidence            357899999999999999999999988777777776655 5777777  5667788888888776544

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.34  E-value=1.4  Score=39.08  Aligned_cols=63  Identities=8%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH-HHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549          297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL-MFRNKAMQEHSSALLIQEGLYRRALEFLKAP  361 (441)
Q Consensus       297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~-ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~  361 (441)
                      ++|...|++|+++.++-+.|.||--....-|.+. .|.-.|+.++|  +..|..-|..|++.+...
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A--~~lak~afd~ai~~l~~l  206 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKA--CSLAKTAFDEAIAELDTL  206 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhcC
Confidence            4799999999999999999999997766666665 55567777777  455666666666665543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.97  E-value=5.5  Score=29.76  Aligned_cols=52  Identities=8%  Similarity=-0.015  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCCchHHHHHHHHHHHHH
Q 013549          282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG-SHHPKVGVVLTCLALMFR  333 (441)
Q Consensus       282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG-~~HP~va~~l~nLa~ly~  333 (441)
                      .+..-|.-+-..|+|++|..+|.+|++.+...+. +..|.....+.....=|.
T Consensus        17 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl   69 (93)
T d1wfda_          17 AVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYM   69 (93)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            4567777888899999999999999999999865 455556666666655553

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=81.56  E-value=1.4  Score=39.16  Aligned_cols=57  Identities=11%  Similarity=-0.006  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhh
Q 013549           82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES-GNYVEAIEKLQKVENFK  138 (441)
Q Consensus        82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~q-G~y~eA~e~~~ral~i~  138 (441)
                      -++|...|++|+.+..+.+.+.||-......|.+.+|++. |+-++|+++-+++++-.
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4578999999999988889999999999999999999876 89999999998875443

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.43  E-value=1.4  Score=39.09  Aligned_cols=57  Identities=14%  Similarity=0.044  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549           82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK  138 (441)
Q Consensus        82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~  138 (441)
                      -++|...|++|+.+..+.+.+.||-......|.+.+|++ .|+-++|+++-+++++-.
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~a  199 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEA  199 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            358999999999998888899999999999999999876 689999999999886544