Citrus Sinensis ID: 013675

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MDFSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccEEEEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccccEEEccccccHHHHHHHHcccEEEEEcccccccccHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHccccEEEEccccccHHHcccccccccccccccccccEEEEEccccccccccccEEEEEEcccccccccEEEccccccccccccEEccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccEcccccccccHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHcccccccEEccHHHHHHHHHHHHHcccEEEEEEcccccEEcHHHHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHccccEEEEccHHHHHHHHHHHcccccccccEEcccEEEEEEccccccccccccEEEEEEcccHcccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccc
Coil and Loop (DISEMBL)
MDFSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSiklvpgvnkyIEAEKQKVVDKMQsgvkskregwwtelpraglgvgVIEKLkeekgkdvvwqgkcsgtvyiggseaeghFSLINEACSmfahtnplhldIFQSVARFEAEVIAMTAALLgnkekasggqvcgnmtsggTESILLAVKSSRDYMrnkrgitrpemiipvsahsaYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRntvlivgsapgfphgiidPIQELGELAlshgtclhvdlclggfvlpfakklgypippfdfsvqgvTSISvdvhkyglapkgtsVVLYRNREIRKHQFVAVTewsgglyvsptvagsrpgglIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGlvlfpmflpplf
Flexible Loop (DISEMBL)
mdfssaksSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKYIEAEKqkvvdkmqsgvkskregwwtelpraglgvgvIEKLkeekgkdvvwqgKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKrgitrpemiipVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDvhkyglapkgtsvVLYRNREIRKHQFVavtewsgglyvSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF
Low Complexity Region (SEG)
MDFSSAKSSLIRFRASANSFLSQYEPVIlllaplltllvarvlQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVlfpmflpplf
Disordered region (IsUnstruct)
**********IRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKVVD********KREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKE****GQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL****
Disordered Region (DISOPRED)
*******SSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNK*****************************R*GLGVGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF
Disordered Region (DISEMBL)
*********LIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKV***********REGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF
Disordered Region (DISPRO)
MDFSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
Q9C509	544	Sphingosine-1-phosphate l	yes	no	0.970	0.781	0.736	0.0
Q52RG7	539	Sphingosine-1-phosphate l	yes	no	0.970	0.788	0.691	1e-168
Q54RV9	528	Sphingosine-1-phosphate l	yes	no	0.908	0.753	0.431	1e-93
Q8CHN6	568	Sphingosine-1-phosphate l	yes	no	0.908	0.700	0.432	5e-89
Q8R0X7	568	Sphingosine-1-phosphate l	yes	no	0.908	0.700	0.423	3e-87
O95470	568	Sphingosine-1-phosphate l	yes	no	0.892	0.688	0.434	4e-87
Q5R4G0	568	Sphingosine-1-phosphate l	yes	no	0.892	0.688	0.432	6e-86
Q9V7Y2	545	Sphingosine-1-phosphate l	yes	no	0.815	0.655	0.433	2e-85
Q9Y194	552	Sphingosine-1-phosphate l	yes	no	0.904	0.717	0.390	5e-75
Q05567	589	Sphingosine-1-phosphate l	yes	no	0.783	0.582	0.434	3e-71

>sp|Q9C509|SGPL_ARATH Sphingosine-1-phosphate lyase OS=Arabidopsis thaliana GN=At1g27980 PE=2 SV=1

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/425 (73%), Positives = 370/425 (87%)

Query: 3   FSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAF 62
           +SS KS LI+ R S NS LS++EP++LLL PL++L +A+++ S    V EKG K   + F
Sbjct: 6   YSSMKSMLIQARGSLNSRLSEFEPLVLLLVPLVSLFLAQIIGSVFGVVHEKGLKACLIGF 65

Query: 63  FMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGK 122
            M  +K++PGV  YI+AEKQKVVD++QSG  SK++     LP  GLGV V+EK++ EK  
Sbjct: 66  IMGLLKMIPGVQNYIDAEKQKVVDQLQSGSSSKKKNKTEVLPVKGLGVEVLEKMENEKRN 125

Query: 123 DVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAA 182
           D +WQGKCSGTVYIGG+E+EGHFSLIN+ACSMFAHTNPLH+D+FQSV RFE+EV+AMTAA
Sbjct: 126 DAIWQGKCSGTVYIGGAESEGHFSLINQACSMFAHTNPLHIDVFQSVVRFESEVVAMTAA 185

Query: 183 LLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242
           LLG+KE ASGGQ+CGNMTSGGTESI+LAVKSSRDYM+ K+GITRPEMIIP S HSAYDKA
Sbjct: 186 LLGSKETASGGQICGNMTSGGTESIVLAVKSSRDYMKYKKGITRPEMIIPESGHSAYDKA 245

Query: 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH 302
           AQYF IKLWRVPVDK+FRADVKA +++INRNT++IVGSAPGFPHGIIDPI+ELG+LALS+
Sbjct: 246 AQYFKIKLWRVPVDKDFRADVKATRRHINRNTIMIVGSAPGFPHGIIDPIEELGQLALSY 305

Query: 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362
           G C HVDLCLGGFVLPFA+KLGY IPPFDFSVQGVTSISVDVHKYGLAPKGTS VLYRN 
Sbjct: 306 GICFHVDLCLGGFVLPFARKLGYQIPPFDFSVQGVTSISVDVHKYGLAPKGTSTVLYRNH 365

Query: 363 EIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSES 422
           EIRKHQFVAVTEWSGGLYVSPT+AGSRPG L+AGAWAA+MSLG+EGYL+NT  IME S+ 
Sbjct: 366 EIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLVAGAWAAMMSLGEEGYLQNTSKIMEASKR 425

Query: 423 IQKGL 427
           +++G+
Sbjct: 426 LEEGV 430

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 2EC: .EC: 2EC: 7

>sp|Q52RG7|SGPL_ORYSJ Sphingosine-1-phosphate lyase OS=Oryza sativa subsp. japonica GN=SPL PE=2 SV=2

 Score =  590 bits (1520), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/431 (69%), Positives = 353/431 (81%), Gaps = 6/431 (1%)

Query: 1   MDFSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFV 60
           MDF+      +R R +AN  LS+YEP++LL APLL LL AR L +   AV ++G +   +
Sbjct: 5   MDFA------LRLRDAANHHLSRYEPLVLLAAPLLALLAARTLHAAAAAVADRGLRTVLL 58

Query: 61  AFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEK 120
           A  M++IKL+PGV+ YI AEK+KVVD++QSG  S +    TELP  GL   VI  L+  K
Sbjct: 59  ALAMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQVINDLETLK 118

Query: 121 GKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMT 180
            +DV WQGKCSGTVYI GSE+EGHF+LIN+A SMF+HTNPLH D+F+SVA+ EAEV+AMT
Sbjct: 119 ARDVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMT 178

Query: 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240
           AALLG KEK+SGGQ+CGNMTSGGTESILLAVK+SRDYMR K+GIT+PEMII  SAHSAYD
Sbjct: 179 AALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYD 238

Query: 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL 300
           KAAQYFNIK+ RVPV+KEF ADVK  K+ IN NT+++VGSAPGFPHG+IDPI+ELGELA 
Sbjct: 239 KAAQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELAS 298

Query: 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
            +  CLHVDLCLGGFVLPFA+KLGYPIPPFDF V+GVTSIS DVHKYGLAPKGTS+VLY+
Sbjct: 299 RYDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYK 358

Query: 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
           N EIRK  F +VTEW+GGLYVSPT+AGSRPGGLIAGAWAA+ SLG  GY+ENT  IMEVS
Sbjct: 359 NHEIRKPYFFSVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVS 418

Query: 421 ESIQKGLVLFP 431
           + IQ+G+   P
Sbjct: 419 KKIQRGIEDIP 429

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

EC: 7

>sp|Q54RV9|SGPL_DICDI Sphingosine-1-phosphate lyase OS=Dictyostelium discoideum GN=sglA PE=2 SV=1

 Score =  343 bits (880), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 179/415 (43%), Positives = 263/415 (63%), Gaps = 17/415 (4%)

Query: 17  ANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKY 76
           AN +L  Y+P  L+LA    +  A +L     A+ ++ FK         SIK +PGV+  
Sbjct: 4   ANDYLKDYQPAKLVLA-TAGITAASILA--YQAITDRDFKDKLNKKIFRSIKSMPGVSDI 60

Query: 77  IEAEKQKVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKE-EKGKDVVW-QGKCSGT 133
           ++ E+ K   +++   K+        LP  G+    +IE++K   K  +  W   K SG 
Sbjct: 61  VKKERAKAKVELKKMFKTDVRNAHYTLPLKGIKHEDLIEEMKALAKVDESHWVDSKVSGC 120

Query: 134 VYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGG 193
           VY+G  E   H  L+NEA S+F+ +NPLH  +F S+ +FE E I+M + +L    K    
Sbjct: 121 VYLGEKE---HTKLLNEAYSLFSLSNPLHPSVFPSIRKFETESISMVSNMLNAHSK---- 173

Query: 194 QVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253
            V G++TSGGTESI +AVK+ RD+ +++    RPE+++PV+ H+A+DKA +Y  I++  +
Sbjct: 174 -VVGSLTSGGTESIFMAVKAYRDFYKDR--TDRPEIVVPVTIHAAFDKACEYLKIRIVHI 230

Query: 254 PVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL 312
            VD   ++ D+ A+KK IN++T+L+ GSA  FPHGIIDPI E+ +LA  +    HVD CL
Sbjct: 231 DVDPVSYKVDMAAMKKAINKDTILVAGSAVNFPHGIIDPIDEIAKLAQQYDIGCHVDACL 290

Query: 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV 372
           GGF+LPFA+KL Y IP FDF + GVTS+SVD HK+G A KGTSVVL+ N+++R+  +   
Sbjct: 291 GGFILPFAEKLDYDIPVFDFRIPGVTSMSVDTHKFGYAAKGTSVVLFGNKKLRRAMYFVA 350

Query: 373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
             W GG+Y SPT+ GSRPGGL+A  WA+L+S+G +G+LE  K +ME ++ I KGL
Sbjct: 351 PNWPGGIYASPTLPGSRPGGLVAACWASLVSMGNDGFLEKAKGVMETTKKIIKGL 405

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine (By similarity). Sphingosine-1-phosphate (S1P) probably acts intracellularly as a second messenger perhaps by promoting cell proliferation; the absence of S1P lyase increases its concentration. This leads to increased lateral pseudopod formation as well as defects in the efficiency of chemotaxis (PubMed:15476260). Overexpression of S1P lyase causes decreased growth rates, entry into stationary phase at lower cell density and increased sensitivity to the antitumor agents cisplatin and carboplatin; these effects are more pronounced in cells that express more enzyme (PubMed:15190000).

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

EC: 7

>sp|Q8CHN6|SGPL1_RAT Sphingosine-1-phosphate lyase 1 OS=Rattus norvegicus GN=Sgpl1 PE=2 SV=1

 Score =  328 bits (841), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 180/416 (43%), Positives = 254/416 (61%), Gaps = 18/416 (4%)

Query: 18  NSFLSQYEPVILLLAPLL-TLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKY 76
           N + ++YEP  L+   +L TLLV  V +      + +     F       I+ +P + + 
Sbjct: 31  NGYCTKYEPWQLIAGSVLCTLLVVWVYELIF---QPESLWSRFKNKLFRLIRKMPFIGRK 87

Query: 77  IEAEKQKVVDKMQSGVKSKR--EGWWTELPRAGLGVG-VIEKLKEEKGKDVVWQ-GKCSG 132
           I+ +  K    +   +   +  + +   LP  GL    V+E+LKE    DV WQ GK SG
Sbjct: 88  IQQQLTKAKKDLVKNMPFLKLDKDYVKTLPAQGLSTAEVLERLKEYSSMDVFWQEGKASG 147

Query: 133 TVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASG 192
            VY G  +      L+ +A   F  +NPLH DIF  + + EAE++ MT +L        G
Sbjct: 148 AVYSGEPKLT---ELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMTCSLFNG-----G 199

Query: 193 GQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252
              CG +TSGGTESIL+A K+ RD +  ++GI  PE++ P SAH+A+DKAA YF +K+ R
Sbjct: 200 PDSCGCVTSGGTESILMACKAYRD-LALEKGIKTPEIVAPESAHAAFDKAAHYFGMKIVR 258

Query: 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL 312
           V   K    DV+A+K+ I+RNT ++V SAP FPHG+IDPI E+ +LA+ +    HVD CL
Sbjct: 259 VAQKKNMEVDVRAMKRAISRNTAMLVCSAPQFPHGVIDPIPEVAKLAVKYKIPFHVDACL 318

Query: 313 GGFVLPFAKKLGYPI-PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA 371
           GGF++ F +K GYP+  PFDF V+GVTSIS D HKYG APKG+SVV+Y N + RK+QF  
Sbjct: 319 GGFLIVFMEKAGYPLEKPFDFRVKGVTSISADTHKYGYAPKGSSVVMYSNEKYRKYQFFV 378

Query: 372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
             +W GG+Y SP++AGSRPGG+IA  WAALM  G+ GY+E TK I++ +  ++  L
Sbjct: 379 DADWQGGIYASPSIAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTARFLKSEL 434

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

EC: 7

>sp|Q8R0X7|SGPL1_MOUSE Sphingosine-1-phosphate lyase 1 OS=Mus musculus GN=Sgpl1 PE=2 SV=1

 Score =  322 bits (825), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 176/416 (42%), Positives = 254/416 (61%), Gaps = 18/416 (4%)

Query: 18  NSFLSQYEPVILL-LAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKY 76
           N + ++YEP  L+  + L TLL+  V +      + +     F       I+ +P + + 
Sbjct: 31  NGYCTKYEPWQLIAWSVLCTLLIVWVYELIF---QPESLWSRFKKKLFKLIRKMPFIGRK 87

Query: 77  IEAEKQKVVDKMQSGVKSKR--EGWWTELPRAGLGVG-VIEKLKEEKGKDVVWQ-GKCSG 132
           IE +  K    +   +   +  + +   LP  G+G   V+E+LKE    D  WQ GK SG
Sbjct: 88  IEQQVSKAKKDLVKNMPFLKVDKDYVKTLPAQGMGTAEVLERLKEYSSMDGSWQEGKASG 147

Query: 133 TVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASG 192
            VY G  +      L+ +A   F  +NPLH DIF  + + EAE++ MT +L        G
Sbjct: 148 AVYNGEPKLT---ELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMTCSLFNG-----G 199

Query: 193 GQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252
              CG +TSGGTESIL+A K+ RD +  ++GI  PE++ P SAH+A+DKAA YF +K+ R
Sbjct: 200 PDSCGCVTSGGTESILMACKAYRD-LALEKGIKTPEIVAPESAHAAFDKAAHYFGMKIVR 258

Query: 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL 312
           V + K    DV+A+K+ I+RNT ++V S P FPHG++DP+ E+ +LA+ +   LHVD CL
Sbjct: 259 VALKKNMEVDVQAMKRAISRNTAMLVCSTPQFPHGVMDPVPEVAKLAVRYKIPLHVDACL 318

Query: 313 GGFVLPFAKKLGYPI-PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA 371
           GGF++ F +K GYP+  PFDF V+GVTSIS D HKYG APKG+SVV+Y N + R +QF  
Sbjct: 319 GGFLIVFMEKAGYPLEKPFDFRVKGVTSISADTHKYGYAPKGSSVVMYSNEKYRTYQFFV 378

Query: 372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
             +W GG+Y SP++AGSRPGG+IA  WAALM  G+ GY+E TK I++ +  ++  L
Sbjct: 379 GADWQGGVYASPSIAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTARFLKSEL 434

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

EC: 7

>sp|O95470|SGPL1_HUMAN Sphingosine-1-phosphate lyase 1 OS=Homo sapiens GN=SGPL1 PE=1 SV=3

 Score =  322 bits (825), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 184/423 (43%), Positives = 261/423 (61%), Gaps = 32/423 (7%)

Query: 18  NSFLSQYEPVILLLAPLL-TLLVAR----VLQ--SFLDAVREKGFKQTFVAFFMSSIKLV 70
           N   ++YEP  L+   ++ TLL+      V Q  S     ++K FK T         + +
Sbjct: 31  NGHCTKYEPWQLIAWSVVWTLLIVWGYEFVFQPESLWSRFKKKCFKLT---------RKM 81

Query: 71  PGVNKYIEAEKQKVVD---KMQSGVKSKREGWWTELPRAGLGV-GVIEKLKEEKGKDVVW 126
           P + + I+ +  K  D   K  S +K  +E +   LP  GL    V+EKLKE    D  W
Sbjct: 82  PIIGRKIQDKLNKTKDDISKNMSFLKVDKE-YVKALPSQGLSSSAVLEKLKEYSSMDAFW 140

Query: 127 Q-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG 185
           Q G+ SGTVY G    E    L+ +A   FA +NPLH DIF  + + EAE++ +  +L  
Sbjct: 141 QEGRASGTVYSG---EEKLTELLVKAYGDFAWSNPLHPDIFPGLRKIEAEIVRIACSLFN 197

Query: 186 NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245
                 G   CG +TSGGTESIL+A K+ RD +  ++GI  PE++ P SAH+A++KAA Y
Sbjct: 198 G-----GPDSCGCVTSGGTESILMACKAYRD-LAFEKGIKTPEIVAPQSAHAAFNKAASY 251

Query: 246 FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTC 305
           F +K+ RVP+ K    DV+A+++ I+RNT ++V S P FPHG+IDP+ E+ +LA+ +   
Sbjct: 252 FGMKIVRVPLTKMMEVDVRAMRRAISRNTAMLVCSTPQFPHGVIDPVPEVAKLAVKYKIP 311

Query: 306 LHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREI 364
           LHVD CLGGF++ F +K GYP+  PFDF V+GVTSIS D HKYG APKG+S+VLY +++ 
Sbjct: 312 LHVDACLGGFLIVFMEKAGYPLEHPFDFRVKGVTSISADTHKYGYAPKGSSLVLYSDKKY 371

Query: 365 RKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQ 424
           R +QF   T+W GG+Y SPT+AGSRPGG+ A  WAALM  G+ GY+E TK I++ +  ++
Sbjct: 372 RNYQFFVDTDWQGGIYASPTIAGSRPGGISAACWAALMHFGENGYVEATKQIIKTARFLK 431

Query: 425 KGL 427
             L
Sbjct: 432 SEL 434

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

EC: 7

>sp|Q5R4G0|SGPL1_PONAB Sphingosine-1-phosphate lyase 1 OS=Pongo abelii GN=SGPL1 PE=2 SV=1

 Score =  318 bits (814), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 183/423 (43%), Positives = 259/423 (61%), Gaps = 32/423 (7%)

Query: 18  NSFLSQYEPVILLLAPLL-TLLVAR----VLQ--SFLDAVREKGFKQTFVAFFMSSIKLV 70
           N   ++YEP  L+   ++ TLL+      V Q  S     ++K FK T         + +
Sbjct: 31  NGHCTKYEPWQLIAWSVVWTLLIVWGYEFVFQPESLWSRFKKKCFKLT---------RKM 81

Query: 71  PGVNKYIEAEKQKVVD---KMQSGVKSKREGWWTELPRAGLGV-GVIEKLKEEKGKDVVW 126
           P + + I+ +  K  D   K  S +K  +E +   LP  GL    V+EKLKE    D  W
Sbjct: 82  PIIGRKIQDKLNKTKDDISKNMSFLKVDKE-YVKALPSQGLSSSAVLEKLKEYSSMDAFW 140

Query: 127 Q-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG 185
           Q G+ SGTVY G    E    L+ +A   FA +NPLH DIF  + + EAE++ +  +L  
Sbjct: 141 QEGRASGTVYSG---EEKLTELLVKAYGDFAWSNPLHPDIFPGLRKIEAEIVRIACSLFN 197

Query: 186 NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245
                 G   CG +TSGGTESIL+A K+ RD +  ++GI   E++ P SAH+A++KAA Y
Sbjct: 198 G-----GPDSCGCVTSGGTESILMACKAYRD-LAFEKGIKTSEIVAPQSAHAAFNKAASY 251

Query: 246 FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTC 305
           F +K+ RVP+ K    DV+A+++ I+RNT ++V S P FPHG+IDP+ E+ +LA+ +   
Sbjct: 252 FGMKIVRVPLTKMMEVDVRAMRRAISRNTAMLVCSTPQFPHGVIDPVPEVAKLAVKYKIP 311

Query: 306 LHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREI 364
           LHVD CLGGF+  F +K GYP+  PFDF V+GVTSIS D HKYG APKG+S+VLY +++ 
Sbjct: 312 LHVDACLGGFLTVFMEKAGYPLEHPFDFRVKGVTSISADTHKYGYAPKGSSLVLYSDKKY 371

Query: 365 RKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQ 424
           R +QF   T+W GG+Y SPT+AGSRPGG+ A  WAALM  G+ GY+E TK I++ +  ++
Sbjct: 372 RNYQFFVDTDWQGGIYASPTIAGSRPGGISAACWAALMHFGENGYVEATKQIIKTARFLK 431

Query: 425 KGL 427
             L
Sbjct: 432 SEL 434

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

EC: 7

>sp|Q9V7Y2|SGPL_DROME Sphingosine-1-phosphate lyase OS=Drosophila melanogaster GN=Sply PE=2 SV=1

 Score =  316 bits (810), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/371 (43%), Positives = 228/371 (61%), Gaps = 14/371 (3%)

Query: 63  FMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKRE--GWWTELPRAGLGVGVIEKLKEE- 119
           F    K +P V + +E E  K  +  ++ +K       +   LP  GL    I +L +E 
Sbjct: 61  FFKFAKKIPAVRRQVETELAKAKNDFETEIKKSNAHLTYSETLPEKGLSKEEILRLVDEH 120

Query: 120 -KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVI 177
            K     W+ G+ SG VY  G + +    L+ E     ++TNPLH D+F  V + EAEV+
Sbjct: 121 LKTGHYNWRDGRVSGAVY--GYKPD-LVELVTEVYGKASYTNPLHADLFPGVCKMEAEVV 177

Query: 178 AMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237
            M   L      +     CG MT+GGTESI++A+K+ RD+ R  +GITRP +++P + H+
Sbjct: 178 RMACNLFHGNSAS-----CGTMTTGGTESIVMAMKAYRDFAREYKGITRPNIVVPKTVHA 232

Query: 238 AYDKAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELG 296
           A+DK  QYFNI +  V VD E +  D+K  K+ INRNT+L+VGSAP FP+G ID I+ + 
Sbjct: 233 AFDKGGQYFNIHVRSVDVDPETYEVDIKKFKRAINRNTILLVGSAPNFPYGTIDDIEAIA 292

Query: 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSV 356
            L + +   +HVD CLG FV+   +  GY + PFDF V+GVTSIS D HKYG APKG+SV
Sbjct: 293 ALGVKYDIPVHVDACLGSFVVALVRNAGYKLRPFDFEVKGVTSISADTHKYGFAPKGSSV 352

Query: 357 VLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAI 416
           +LY +++ + HQF   T+W GG+Y SPTV GSR GG+IA  WA +MS G +GYLE TK I
Sbjct: 353 ILYSDKKYKDHQFTVTTDWPGGVYGSPTVNGSRAGGIIAACWATMMSFGYDGYLEATKRI 412

Query: 417 MEVSESIQKGL 427
           ++ +  I++G+
Sbjct: 413 VDTARYIERGV 423

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Sphingolipid catabolism is required for normal development including viability, reproduction and muscle development.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

EC: 7

>sp|Q9Y194|SGPL_CAEEL Sphingosine-1-phosphate lyase OS=Caenorhabditis elegans GN=spl-1 PE=1 SV=1

 Score =  281 bits (720), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/420 (39%), Positives = 246/420 (58%), Gaps = 24/420 (5%)

Query: 18  NSFLSQYEPVILLLAPLL-TLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKY 76
           N  LS+Y+PV+L+LA    TL+  +V+  +  +  E    +   A+  S ++ +P V   
Sbjct: 23  NDRLSRYDPVVLVLAAFGGTLVYTKVVHLYRKS--EDPILKRMGAYVFSLLRKLPAVRDK 80

Query: 77  IE----AEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLK---EEKGKDVVWQGK 129
           IE    AEK K+++ +    K K+  + + LP A L    I +L    E+     +  G+
Sbjct: 81  IEKELAAEKPKLIESIHKDDKDKQ--FISTLPIAPLSQDSIMELAKKYEDYNTFNIDGGR 138

Query: 130 CSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEK 189
            SG VY     AE H +L+ +    +A +NPLH D+F    + EAE+I M   L    E 
Sbjct: 139 VSGAVYTD-RHAE-HINLLGKIYEKYAFSNPLHPDVFPGARKMEAELIRMVLNLYNGPED 196

Query: 190 ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK 249
           +SG     ++TSGGTESI++A  S R+   +  GI  P ++   +AH+A+DKAA    ++
Sbjct: 197 SSG-----SVTSGGTESIIMACFSYRNRAHS-LGIEHPVILACKTAHAAFDKAAHLCGMR 250

Query: 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVD 309
           L  VPVD + R D+K +++ I+ N  ++VGSAP FP G IDPI E+ +L   +G  +HVD
Sbjct: 251 LRHVPVDSDNRVDLKEMERLIDSNVCMLVGSAPNFPSGTIDPIPEIAKLGKKYGIPVHVD 310

Query: 310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369
            CLGGF++PF    GY IP FDF   GVTSIS D HKYG  PKG+S+V+YR++E+   Q+
Sbjct: 311 ACLGGFMIPFMNDAGYLIPVFDFRNPGVTSISCDTHKYGCTPKGSSIVMYRSKELHHFQY 370

Query: 370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIME----VSESIQK 425
            +V +W GG+Y +PT+AGSR G   A AWA L+S G++ Y+     I++    ++E I+K
Sbjct: 371 FSVADWCGGIYATPTIAGSRAGANTAVAWATLLSFGRDEYVRRCAQIVKHTRMLAEKIEK 430

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine (By similarity). Essential for normal development, growth and reproduction.

Caenorhabditis elegans (taxid: 6239)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

EC: 7

>sp|Q05567|SGPL_YEAST Sphingosine-1-phosphate lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPL1 PE=1 SV=1

 Score =  269 bits (688), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 160/368 (43%), Positives = 231/368 (62%), Gaps = 25/368 (6%)

Query: 73  VNKYIEAEKQKVVDKMQSGVKSKREGW-WTELPRAGL-GVGVIEKLKEEKGKDVV----W 126
           V K +   KQ + D++   ++S  +   + +LP  G+    VIE+L   K  D++    W
Sbjct: 110 VEKEVTKVKQSIEDEL---IRSDSQLMNFPQLPSNGIPQDDVIEELN--KLNDLIPHTQW 164

Query: 127 -QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG 185
            +GK SG VY GG +   H   I  A   +   N LH D+F +V + E+EV++M   +  
Sbjct: 165 KEGKVSGAVYHGGDDLI-HLQTI--AYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMF- 220

Query: 186 NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245
               A     CG  TSGGTES+LLA  S++ Y  + RGIT PE+I PV+AH+ +DKAA Y
Sbjct: 221 ---NAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYY 277

Query: 246 FNIKLWRVPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGT 304
           F +KL  V +D   ++ D+  +KK+IN+NT+L+VGSAP FPHGI D I+ LG++A  +  
Sbjct: 278 FGMKLRHVELDPTTYQVDLGKVKKFINKNTILLVGSAPNFPHGIADDIEGLGKIAQKYKL 337

Query: 305 CLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
            LHVD CLG F++ F +K GY  +P  DF V GVTSIS D HKYG APKG+SV++YRN +
Sbjct: 338 PLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSD 397

Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAI----MEV 419
           +R HQ+     W+GGLY SPT+AGSRPG ++ G WA ++++G+ GY+E+ + I    M+ 
Sbjct: 398 LRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKF 457

Query: 420 SESIQKGL 427
            + IQ+ +
Sbjct: 458 KKYIQENI 465

Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
255547660	541	sphingosine phosphate lyase, putative [R	0.984	0.796	0.795	0.0
449445558	540	PREDICTED: sphingosine-1-phosphate lyase	0.981	0.796	0.795	0.0
224075541	540	predicted protein [Populus trichocarpa]	0.968	0.785	0.799	0.0
225468725	537	PREDICTED: sphingosine-1-phosphate lyase	0.958	0.782	0.804	0.0
297738481	529	unnamed protein product [Vitis vinifera]	0.956	0.792	0.806	0.0
357502907	541	Sphingosine-1-phosphate lyase [Medicago	0.984	0.796	0.756	0.0
356499691	536	PREDICTED: sphingosine-1-phosphate lyase	0.958	0.783	0.792	0.0
356567206	535	PREDICTED: sphingosine-1-phosphate lyase	0.958	0.785	0.780	0.0
116786846	544	unknown [Picea sitchensis]	0.956	0.770	0.739	0.0
297845746	544	pyridoxal-dependent decarboxylase family	0.970	0.781	0.736	0.0

>gi|255547660|ref|XP_002514887.1| sphingosine phosphate lyase, putative [Ricinus communis] gi|223545938|gb|EEF47441.1| sphingosine phosphate lyase, putative [Ricinus communis]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/431 (79%), Positives = 384/431 (89%)

Query: 1   MDFSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFV 60
           M+  S K  LI+FR +ANSFLS+YEP+ L+LAPLLTLL+AR+L S      E G K T  
Sbjct: 1   MEMDSVKELLIQFRVTANSFLSEYEPLALVLAPLLTLLLARILHSLFRVFYENGLKSTLF 60

Query: 61  AFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEK 120
            F M+SIKLVPGV  YI+AEKQKVVDK+QSG KSKREGW  ELP  GLG  +IEK+KEEK
Sbjct: 61  GFLMASIKLVPGVKSYIDAEKQKVVDKLQSGSKSKREGWRVELPMEGLGTEIIEKMKEEK 120

Query: 121 GKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMT 180
             D VWQGKCSGTVYIGGSE+EGHFS+INEACSMFAHTNPLHLD+FQS+ARFEAEV+AMT
Sbjct: 121 RNDAVWQGKCSGTVYIGGSESEGHFSIINEACSMFAHTNPLHLDVFQSIARFEAEVVAMT 180

Query: 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240
           A+LLG+KEKASGG++CGNMTSGGTESILLAVKSSRDYM+ K+GITRPEMIIP SAHSAYD
Sbjct: 181 ASLLGSKEKASGGEICGNMTSGGTESILLAVKSSRDYMKVKKGITRPEMIIPESAHSAYD 240

Query: 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL 300
           KAAQYFNIKLWRVPV+KEF+AD KAI+++INRNTVLIVGSAPGFPHGIIDPI+ELGELA 
Sbjct: 241 KAAQYFNIKLWRVPVNKEFQADAKAIRRHINRNTVLIVGSAPGFPHGIIDPIEELGELAF 300

Query: 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
            +G C HVDLCLGGFVLPFA+KLGYP+PPFDFSV+GVTSISVDVHKYGLAPKGTSVVLYR
Sbjct: 301 RYGICFHVDLCLGGFVLPFARKLGYPMPPFDFSVKGVTSISVDVHKYGLAPKGTSVVLYR 360

Query: 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
           N +IRKHQFVAVTEWSGGLYVSPT+AGSRPGGLIAGAWAA+MSLG EGYL+NTK IMEV+
Sbjct: 361 NHDIRKHQFVAVTEWSGGLYVSPTIAGSRPGGLIAGAWAAMMSLGLEGYLKNTKVIMEVT 420

Query: 421 ESIQKGLVLFP 431
           + IQKG+   P
Sbjct: 421 KKIQKGIEEMP 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445558|ref|XP_004140539.1| PREDICTED: sphingosine-1-phosphate lyase-like [Cucumis sativus] gi|449523944|ref|XP_004168983.1| PREDICTED: sphingosine-1-phosphate lyase-like [Cucumis sativus]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/431 (79%), Positives = 386/431 (89%), Gaps = 1/431 (0%)

Query: 1   MDFSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFV 60
           MD SS KS L+ FRASAN+FLS+YEP+ L+  PLL LL+ARVLQSFLD V E G K T +
Sbjct: 1   MD-SSLKSVLVEFRASANAFLSKYEPLALVFGPLLVLLLARVLQSFLDLVYEAGLKATCL 59

Query: 61  AFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEK 120
           +FFM++IKL+PGV + I++EKQKVV+K+QS   SKRE W TELP AGLG  VIEK+K EK
Sbjct: 60  SFFMATIKLIPGVKRRIDSEKQKVVEKLQSSGNSKRESWRTELPMAGLGTEVIEKMKSEK 119

Query: 121 GKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMT 180
             DVVWQGKCSGTVYIGGSE+EGHFS+INEACSMFAHTNPLHLD+FQSV RFEAEV+AMT
Sbjct: 120 QNDVVWQGKCSGTVYIGGSESEGHFSIINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMT 179

Query: 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240
           AA+LG+K +ASGGQ+CGNMTSGGTESILLAVKS+RDYM++KRGI +PEMIIP SAHSAYD
Sbjct: 180 AAILGSKVEASGGQICGNMTSGGTESILLAVKSTRDYMKSKRGIKKPEMIIPESAHSAYD 239

Query: 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL 300
           KAA YFNIKLWRVPVDKEF+ADVKAI+K+INRNT+LIVGSAPGFPHGIIDPI ELGELA 
Sbjct: 240 KAAHYFNIKLWRVPVDKEFKADVKAIRKFINRNTILIVGSAPGFPHGIIDPIVELGELAS 299

Query: 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
           S G CLHVD CLGGFVLPFA+KLGYPIPP DFSV+GVTSISVDVHKYGLAPKGTSVVLYR
Sbjct: 300 SSGICLHVDFCLGGFVLPFARKLGYPIPPCDFSVKGVTSISVDVHKYGLAPKGTSVVLYR 359

Query: 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
           N EIRKHQFVAV+EWSGGLYVSPT+AGSRPGGLIAGAWAA+MSLG+EGYL+NTK IMEVS
Sbjct: 360 NHEIRKHQFVAVSEWSGGLYVSPTIAGSRPGGLIAGAWAAMMSLGEEGYLQNTKEIMEVS 419

Query: 421 ESIQKGLVLFP 431
           + I +G+   P
Sbjct: 420 KRIHRGINEIP 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075541|ref|XP_002304674.1| predicted protein [Populus trichocarpa] gi|222842106|gb|EEE79653.1| predicted protein [Populus trichocarpa]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/424 (79%), Positives = 379/424 (89%)

Query: 8   SSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSI 67
           SSLI FRA ANSFLS YEP+ LLLAPLLTL  AR+LQS    V + G K T + F ++SI
Sbjct: 7   SSLIDFRAFANSFLSNYEPLALLLAPLLTLFTARILQSLCLLVHDNGLKPTILGFLITSI 66

Query: 68  KLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQ 127
           K+VPGV  YI+AEKQKVV+K+QSG KSKR+GW +ELP+ GLG  VIEKLK+EK  DVVWQ
Sbjct: 67  KMVPGVKGYIDAEKQKVVEKLQSGSKSKRDGWRSELPKEGLGAAVIEKLKQEKSNDVVWQ 126

Query: 128 GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK 187
           GKCSGTVYIGGSE+EGHFSLINEACSMFAHTNPLH+D+FQ++A+ EAEV+AMTAALLG+K
Sbjct: 127 GKCSGTVYIGGSESEGHFSLINEACSMFAHTNPLHMDVFQTIAQCEAEVVAMTAALLGSK 186

Query: 188 EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247
            K+SGG++CGNMTSGGTESILLAVKSSRDYM+ K+GI RPEMIIP SAHSAYDKAAQYFN
Sbjct: 187 NKSSGGEICGNMTSGGTESILLAVKSSRDYMKAKKGIKRPEMIIPESAHSAYDKAAQYFN 246

Query: 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307
           IKL RVPV+K F+ADVKAI++ IN+NTVLIVGSAPGFPHGIIDPI+ELGELA S+G C H
Sbjct: 247 IKLRRVPVNKNFQADVKAIRQQINKNTVLIVGSAPGFPHGIIDPIEELGELAYSYGICFH 306

Query: 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH 367
           VDLCLGGFVLPFA KLGYPIPPFDFSV+GVTSIS DVHKYGLAPKGTSVVLYRN +IRKH
Sbjct: 307 VDLCLGGFVLPFACKLGYPIPPFDFSVKGVTSISADVHKYGLAPKGTSVVLYRNHDIRKH 366

Query: 368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
           QFVAVTEWSGGLYVSPT+AGSRPGGLIAGAWAALM+LG EGYLENTKAIMEVS+ IQKG+
Sbjct: 367 QFVAVTEWSGGLYVSPTIAGSRPGGLIAGAWAALMALGLEGYLENTKAIMEVSKRIQKGI 426

Query: 428 VLFP 431
              P
Sbjct: 427 KEIP 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468725|ref|XP_002273495.1| PREDICTED: sphingosine-1-phosphate lyase [Vitis vinifera]

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/420 (80%), Positives = 380/420 (90%)

Query: 12  RFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVP 71
             RA+ANSFLS+YEP+ LLLAPLL LL+AR+LQ F+  V EKG K T + F ++S+KLVP
Sbjct: 8   HMRAAANSFLSEYEPLNLLLAPLLALLIARILQCFVGVVNEKGLKATILGFLITSVKLVP 67

Query: 72  GVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCS 131
           GV +YI+AEKQKVVDK+QSG KSKR+GW TELPR GLG GVIEK+KEEK  DVVWQGKCS
Sbjct: 68  GVKRYIDAEKQKVVDKLQSGSKSKRDGWSTELPRTGLGEGVIEKMKEEKRNDVVWQGKCS 127

Query: 132 GTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKAS 191
           GTVYIGGSE+EGHFSLINEA SMFAHTNPLH+D+FQSV RFE EV+AMTAALLG+KEKAS
Sbjct: 128 GTVYIGGSESEGHFSLINEAYSMFAHTNPLHMDVFQSVVRFEVEVVAMTAALLGSKEKAS 187

Query: 192 GGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW 251
           GGQ+CGNMTSGGTESILLAVK+SRDYM+ KRGITRPEMIIP SAHSAYDKAAQYFNIKL 
Sbjct: 188 GGQICGNMTSGGTESILLAVKTSRDYMKAKRGITRPEMIIPESAHSAYDKAAQYFNIKLL 247

Query: 252 RVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311
           RVPV+KEF+ADVK I+++IN+NT+LIVGSAPGFPHGIIDPI+ELGELA S G C HVDLC
Sbjct: 248 RVPVNKEFQADVKGIRRHINKNTILIVGSAPGFPHGIIDPIEELGELASSFGICFHVDLC 307

Query: 312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA 371
           LGGFVLPFA+KLGYPIPPFDFSV+GVTSISVDVHKYGLAPKGTSVVLYRN +IRKHQFVA
Sbjct: 308 LGGFVLPFARKLGYPIPPFDFSVEGVTSISVDVHKYGLAPKGTSVVLYRNHDIRKHQFVA 367

Query: 372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP 431
           VTEWSGGLYVSPT+AGSRPG LIAGAWAA++SLGQEGYL NT+  MEVS+ +Q+G+   P
Sbjct: 368 VTEWSGGLYVSPTIAGSRPGALIAGAWAAMISLGQEGYLNNTRETMEVSKKLQRGIKDIP 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738481|emb|CBI27682.3| unnamed protein product [Vitis vinifera]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/419 (80%), Positives = 380/419 (90%)

Query: 13  FRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIKLVPG 72
            RA+ANSFLS+YEP+ LLLAPLL LL+AR+LQ F+  V EKG K T + F ++S+KLVPG
Sbjct: 1   MRAAANSFLSEYEPLNLLLAPLLALLIARILQCFVGVVNEKGLKATILGFLITSVKLVPG 60

Query: 73  VNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCSG 132
           V +YI+AEKQKVVDK+QSG KSKR+GW TELPR GLG GVIEK+KEEK  DVVWQGKCSG
Sbjct: 61  VKRYIDAEKQKVVDKLQSGSKSKRDGWSTELPRTGLGEGVIEKMKEEKRNDVVWQGKCSG 120

Query: 133 TVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASG 192
           TVYIGGSE+EGHFSLINEA SMFAHTNPLH+D+FQSV RFE EV+AMTAALLG+KEKASG
Sbjct: 121 TVYIGGSESEGHFSLINEAYSMFAHTNPLHMDVFQSVVRFEVEVVAMTAALLGSKEKASG 180

Query: 193 GQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252
           GQ+CGNMTSGGTESILLAVK+SRDYM+ KRGITRPEMIIP SAHSAYDKAAQYFNIKL R
Sbjct: 181 GQICGNMTSGGTESILLAVKTSRDYMKAKRGITRPEMIIPESAHSAYDKAAQYFNIKLLR 240

Query: 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL 312
           VPV+KEF+ADVK I+++IN+NT+LIVGSAPGFPHGIIDPI+ELGELA S G C HVDLCL
Sbjct: 241 VPVNKEFQADVKGIRRHINKNTILIVGSAPGFPHGIIDPIEELGELASSFGICFHVDLCL 300

Query: 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV 372
           GGFVLPFA+KLGYPIPPFDFSV+GVTSISVDVHKYGLAPKGTSVVLYRN +IRKHQFVAV
Sbjct: 301 GGFVLPFARKLGYPIPPFDFSVEGVTSISVDVHKYGLAPKGTSVVLYRNHDIRKHQFVAV 360

Query: 373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP 431
           TEWSGGLYVSPT+AGSRPG LIAGAWAA++SLGQEGYL NT+  MEVS+ +Q+G+   P
Sbjct: 361 TEWSGGLYVSPTIAGSRPGALIAGAWAAMISLGQEGYLNNTRETMEVSKKLQRGIKDIP 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502907|ref|XP_003621742.1| Sphingosine-1-phosphate lyase [Medicago truncatula] gi|355496757|gb|AES77960.1| Sphingosine-1-phosphate lyase [Medicago truncatula]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/431 (75%), Positives = 377/431 (87%)

Query: 1   MDFSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFV 60
           MD S+ KS    FR +ANSFLSQYEP+ LLL PL +LL+A  ++SF   + +KG K T +
Sbjct: 1   MDSSALKSQFNHFRTTANSFLSQYEPLTLLLVPLFSLLIANAVRSFFGVIHDKGIKATLL 60

Query: 61  AFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEK 120
            FFM+ IKL+PGV  YI+AEKQKVVDK+QS  KSKREGW TELP  GLG  VIEK++EEK
Sbjct: 61  GFFMNFIKLIPGVKSYIDAEKQKVVDKLQSDGKSKREGWKTELPSMGLGTSVIEKMREEK 120

Query: 121 GKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMT 180
             D VWQGKCSGTVYIGG E+ GHFS+INEACSMFAHTNPLHLD+FQSV RFEAEV+AMT
Sbjct: 121 RNDAVWQGKCSGTVYIGGDESGGHFSVINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMT 180

Query: 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240
           AALLG+KEK SGGQ+CGNMTSGGTESILLAVKSSRDYM++K+GIT+PEMIIP S HSAYD
Sbjct: 181 AALLGSKEKTSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITKPEMIIPESGHSAYD 240

Query: 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL 300
           KAAQYFNIKLWRVPVDK F+ADVKA ++YIN+NT+++VGS+PGFPHGIIDPI+ELG+LA 
Sbjct: 241 KAAQYFNIKLWRVPVDKNFQADVKATRRYINKNTIMLVGSSPGFPHGIIDPIKELGQLAS 300

Query: 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
           +   C HVDLCLGGFVLPFA++LGYPI P+DF+V+GVTSISVDVHKYGLAPKGTS+VLYR
Sbjct: 301 NFDICFHVDLCLGGFVLPFARELGYPIQPYDFTVKGVTSISVDVHKYGLAPKGTSIVLYR 360

Query: 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
           N +IRKHQFVAVTEWSGGLYVSPT+AGSRPG LIAGAWAA++SLG+EGYLENTKAIME S
Sbjct: 361 NHDIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMISLGKEGYLENTKAIMEGS 420

Query: 421 ESIQKGLVLFP 431
           + +QKG+   P
Sbjct: 421 KKLQKGIEEIP 431

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499691|ref|XP_003518670.1| PREDICTED: sphingosine-1-phosphate lyase-like [Glycine max]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/420 (79%), Positives = 376/420 (89%)

Query: 8   SSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSI 67
           SS+  FRASANSFLSQYEP+ LLLAPLL+LL A  L+SF   + E G K T + F ++S 
Sbjct: 3   SSISHFRASANSFLSQYEPLALLLAPLLSLLFALALRSFFHLLSENGLKATLLGFLINSF 62

Query: 68  KLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQ 127
           KLVPGV +YI+AEKQKVVDK+QS  KSKREGW TELP  GLG  V+EK++EEK  D VWQ
Sbjct: 63  KLVPGVKRYIDAEKQKVVDKLQSDSKSKREGWKTELPSTGLGTTVLEKMREEKINDAVWQ 122

Query: 128 GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK 187
           GKCSGTVYIGGSE++GHFSLINEACSMFAHTNPLHLD+F+SVARFEAEV+AMTAALLG+K
Sbjct: 123 GKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSK 182

Query: 188 EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247
           EK+SGGQ+CGNMTSGGTESILLAVKSSRDYM++K+GITRPEMIIP S HSAYDKAAQYFN
Sbjct: 183 EKSSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAQYFN 242

Query: 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307
           IKLWR PV+K F+AD KAI+++IN+NT+LIVGSAPGFPHG+IDPI+ELG LA S G C H
Sbjct: 243 IKLWRAPVNKNFQADAKAIRRHINKNTILIVGSAPGFPHGVIDPIEELGHLASSFGICFH 302

Query: 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH 367
           VDLCLGGFVLPFA++LGY IPPFDFSV+GV+SISVDVHKYGLAPKGTSVVLYRN EIRKH
Sbjct: 303 VDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKH 362

Query: 368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
           QFVAVTEWSGGLYVSPT+AGSRPG LIAGAWAA+MSLG+EGYL+NTKAIME S  IQKG+
Sbjct: 363 QFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLKNTKAIMEGSRRIQKGI 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567206|ref|XP_003551812.1| PREDICTED: sphingosine-1-phosphate lyase-like [Glycine max]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/420 (78%), Positives = 375/420 (89%)

Query: 8   SSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSI 67
           +S+  FR SANSFLSQYEP+ LLLAPLL+LL A  L+SF   + + G K T + F ++S+
Sbjct: 2   ASISHFRTSANSFLSQYEPLSLLLAPLLSLLFAHALRSFFHLLSQNGLKATLLGFLINSL 61

Query: 68  KLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQ 127
           KLVPGV  YI+AEKQKVVDK+QS  KSKREGW TELP  GLG  V+EK++EEK  D VWQ
Sbjct: 62  KLVPGVKGYIDAEKQKVVDKLQSDGKSKREGWKTELPSTGLGTSVLEKMREEKINDAVWQ 121

Query: 128 GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK 187
           GKCSGTVYIGGSE++GHFSLINEACSMFAHTNPLHLD+F+SVARFEAEV+AMTAALLG+K
Sbjct: 122 GKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSK 181

Query: 188 EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247
           EK+SG Q+CGNMTSGGTESILLAVKSSRDYM++K+GITRPEMIIP S HSAYDKAAQYFN
Sbjct: 182 EKSSGRQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAQYFN 241

Query: 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307
           IKLWRVPV+K F+ADVKAI+++IN+NT+LIVGSAPGFPHG+IDPI+ELG LA S G C H
Sbjct: 242 IKLWRVPVNKNFQADVKAIRRHINKNTILIVGSAPGFPHGVIDPIEELGHLASSFGICFH 301

Query: 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH 367
           VDLCLGGFVLPFA++LGY IPPFDFSV+GV+SISVDVHKYGLAPKGTSVVLYRN EIRKH
Sbjct: 302 VDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKH 361

Query: 368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
           QFVAVTEWSGGLYVSPT+AGSRPG LIAGAWAA++SLG+EGYL+NTK IME S  IQ+G+
Sbjct: 362 QFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMISLGKEGYLKNTKEIMEGSRRIQQGI 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116786846|gb|ABK24262.1| unknown [Picea sitchensis]

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/423 (73%), Positives = 366/423 (86%), Gaps = 4/423 (0%)

Query: 13  FRASANSFLSQYEPVILLLAP----LLTLLVARVLQSFLDAVREKGFKQTFVAFFMSSIK 68
            RASAN  L QYEPVIL++ P    LL+L+V R++  FL   ++ GFK  F+   M++I+
Sbjct: 12  LRASANGALRQYEPVILVIFPFVASLLSLVVGRLIHLFLQLAQDNGFKGAFLIILMNNIR 71

Query: 69  LVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQG 128
           L+PG+  YIE EK KVV K+QS VKS RE W TELPRAGLG+GVIE+LK EK KDV WQG
Sbjct: 72  LIPGLRGYIEREKGKVVGKLQSSVKSGRENWQTELPRAGLGIGVIERLKFEKSKDVQWQG 131

Query: 129 KCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKE 188
           +CSGTVYIGGSE+EGHFSLINEA SMFAHTNPLHL IF S+ARFE EV+AMTA++ G++E
Sbjct: 132 RCSGTVYIGGSESEGHFSLINEAYSMFAHTNPLHLSIFPSIARFEGEVVAMTASMFGSRE 191

Query: 189 KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI 248
           KASGGQVCGNM+SGGTESILLAVKSSRDYM+ K+GI +PEMIIP SAHSAYDKAAQY  I
Sbjct: 192 KASGGQVCGNMSSGGTESILLAVKSSRDYMKVKKGIMKPEMIIPESAHSAYDKAAQYLKI 251

Query: 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308
           KLWRVPV+++F+ADVKAI++Y+N+NTV+IVGSAPGFPHGIIDPI+EL +LAL  G C HV
Sbjct: 252 KLWRVPVNEDFQADVKAIQRYLNKNTVMIVGSAPGFPHGIIDPIEELADLALRWGICFHV 311

Query: 309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQ 368
           DLCLGGFVLPFA+KLGYPIPPFDF+VQGVTSISVD+HKYGL PKGTSVVLYRN EIRK Q
Sbjct: 312 DLCLGGFVLPFARKLGYPIPPFDFTVQGVTSISVDIHKYGLGPKGTSVVLYRNHEIRKQQ 371

Query: 369 FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLV 428
           FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA+M++G+EGYLE  + +MEVS++IQ+G+ 
Sbjct: 372 FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAMMTVGEEGYLEAVRKVMEVSKTIQQGIK 431

Query: 429 LFP 431
             P
Sbjct: 432 QIP 434

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845746|ref|XP_002890754.1| pyridoxal-dependent decarboxylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297336596|gb|EFH67013.1| pyridoxal-dependent decarboxylase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/425 (73%), Positives = 371/425 (87%)

Query: 3   FSSAKSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAVREKGFKQTFVAF 62
           +SS KS LI+ R S NS LS++EP++LLLAPLLTL +A+++ S    V +KG K   V F
Sbjct: 6   YSSMKSMLIQARGSLNSRLSEFEPLVLLLAPLLTLFLAQMIGSVFGVVHDKGLKACLVGF 65

Query: 63  FMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGK 122
            M  +K++PGV  YI+AEKQKVVD++QSG  SK++     LP  GLGV V+EK++ EK  
Sbjct: 66  LMGFLKMIPGVQNYIDAEKQKVVDQLQSGSSSKKKNRTEVLPVKGLGVEVLEKMENEKRN 125

Query: 123 DVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAA 182
           D +WQGKCSGTVYIGG+E+EGHF+LIN+ACSMFAHTNPLH+D+FQSV RFE+EV+AMTAA
Sbjct: 126 DAIWQGKCSGTVYIGGAESEGHFALINQACSMFAHTNPLHIDVFQSVVRFESEVVAMTAA 185

Query: 183 LLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242
           LLG+KE  SGG++CGNMTSGGTESI+LAVKSSRDYM+ K+GITRPEMIIP S HSAYDKA
Sbjct: 186 LLGSKETVSGGKICGNMTSGGTESIVLAVKSSRDYMKYKKGITRPEMIIPESGHSAYDKA 245

Query: 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH 302
           AQYFNIKLWRVPVDK+FRADVKA +++IN+NT++IVGSAPGFPHGIIDPI+ELG+LALS+
Sbjct: 246 AQYFNIKLWRVPVDKDFRADVKATRRHINKNTIMIVGSAPGFPHGIIDPIEELGQLALSY 305

Query: 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362
           G C HVDLCLGGFVLPFA+KLGY IPPFDFSVQGVTSISVDVHKYGLAPKGTS VLYRN 
Sbjct: 306 GICFHVDLCLGGFVLPFARKLGYQIPPFDFSVQGVTSISVDVHKYGLAPKGTSTVLYRNH 365

Query: 363 EIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSES 422
           EIRKHQFVAVTEWSGGLYVSPT+AGSRPG L+AGAWAA+MSLG+EGYL+NT  IME S+ 
Sbjct: 366 EIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLVAGAWAAMMSLGEEGYLQNTSKIMEASKR 425

Query: 423 IQKGL 427
           +++G+
Sbjct: 426 LEEGV 430

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
TAIR|locus:2010524	544	DPL1 "dihydrosphingosine phosp	0.970	0.781	0.72	7.4e-169
ZFIN|ZDB-GENE-070410-24	572	sgpl1 "sphingosine-1-phosphate	0.812	0.622	0.463	1.4e-85
DICTYBASE|DDB_G0282819	528	sglA "sphingosine-1-phosphate	0.906	0.751	0.423	1.8e-85
UNIPROTKB|E2RME9	568	SGPL1 "Uncharacterized protein	0.801	0.617	0.468	4.4e-84
UNIPROTKB|A5D788	568	SGPL1 "Uncharacterized protein	0.801	0.617	0.465	1.2e-83
UNIPROTKB|F1SUB2	568	SGPL1 "Uncharacterized protein	0.801	0.617	0.465	8.2e-83
RGD|628599	568	Sgpl1 "sphingosine-1-phosphate	0.803	0.619	0.461	5.8e-82
UNIPROTKB|Q8CHN6	568	Sgpl1 "Sphingosine-1-phosphate	0.803	0.619	0.461	5.8e-82
UNIPROTKB|O95470	568	SGPL1 "Sphingosine-1-phosphate	0.794	0.612	0.461	2.5e-81
FB|FBgn0010591	545	Sply "Sphingosine-1-phosphate	0.812	0.653	0.448	4.1e-81

TAIR|locus:2010524 DPL1 "dihydrosphingosine phosphate lyase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
 Identities = 306/425 (72%), Positives = 357/425 (84%)

Query:     3 FSSAKSSLIRFRASANSFLSQYEPVIXXXXXXXXXXXXXXXQSFLDAVREKGFKQTFVAF 62
             +SS KS LI+ R S NS LS++EP++                S    V EKG K   + F
Sbjct:     6 YSSMKSMLIQARGSLNSRLSEFEPLVLLLVPLVSLFLAQIIGSVFGVVHEKGLKACLIGF 65

Query:    63 FMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGK 122
              M  +K++PGV  YI+AEKQKVVD++QSG  SK++     LP  GLGV V+EK++ EK  
Sbjct:    66 IMGLLKMIPGVQNYIDAEKQKVVDQLQSGSSSKKKNKTEVLPVKGLGVEVLEKMENEKRN 125

Query:   123 DVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAA 182
             D +WQGKCSGTVYIGG+E+EGHFSLIN+ACSMFAHTNPLH+D+FQSV RFE+EV+AMTAA
Sbjct:   126 DAIWQGKCSGTVYIGGAESEGHFSLINQACSMFAHTNPLHIDVFQSVVRFESEVVAMTAA 185

Query:   183 LLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242
             LLG+KE ASGGQ+CGNMTSGGTESI+LAVKSSRDYM+ K+GITRPEMIIP S HSAYDKA
Sbjct:   186 LLGSKETASGGQICGNMTSGGTESIVLAVKSSRDYMKYKKGITRPEMIIPESGHSAYDKA 245

Query:   243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH 302
             AQYF IKLWRVPVDK+FRADVKA +++INRNT++IVGSAPGFPHGIIDPI+ELG+LALS+
Sbjct:   246 AQYFKIKLWRVPVDKDFRADVKATRRHINRNTIMIVGSAPGFPHGIIDPIEELGQLALSY 305

Query:   303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362
             G C HVDLCLGGFVLPFA+KLGY IPPFDFSVQGVTSISVDVHKYGLAPKGTS VLYRN 
Sbjct:   306 GICFHVDLCLGGFVLPFARKLGYQIPPFDFSVQGVTSISVDVHKYGLAPKGTSTVLYRNH 365

Query:   363 EIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSES 422
             EIRKHQFVAVTEWSGGLYVSPT+AGSRPG L+AGAWAA+MSLG+EGYL+NT  IME S+ 
Sbjct:   366 EIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLVAGAWAAMMSLGEEGYLQNTSKIMEASKR 425

Query:   423 IQKGL 427
             +++G+
Sbjct:   426 LEEGV 430

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=IEA;ISS

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0030149 "sphingolipid catabolic process" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ZFIN|ZDB-GENE-070410-24 sgpl1 "sphingosine-1-phosphate lyase 1" [Danio rerio (taxid:7955)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 172/371 (46%), Positives = 246/371 (66%)

Query:    63 FMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGW-WTEL-PRAGLG-VGVIEKLKE- 118
             F   I+ +P +   I+ +  K +D M   + + +EG  +T+L P  GL    +++K++E 
Sbjct:    69 FFRIIRKIPFIGASIQNQLNKALDDMSMSLCTLKEGMSYTKLLPAQGLTHKQLLDKIREY 128

Query:   119 EKGKDVVW-QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVI 177
             E   +V W +GK SG VY G  +      L+ +    FA TNPLH DIF  V + EAEV+
Sbjct:   129 ETLSEVNWAKGKVSGAVYWGDEKLT---DLLVKVYGEFAWTNPLHPDIFPGVRKMEAEVV 185

Query:   178 AMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237
              MT AL        G   CG +TSGGTESIL+A K+ RD M ++RGI  PE+I P+S H+
Sbjct:   186 RMTCALFNG-----GPDSCGTVTSGGTESILMACKAYRD-MAHERGIKHPEIIAPISVHA 239

Query:   238 AYDKAAQYFNIKLWRVPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELG 296
             A+DKAA YF +KL  VP+D K  + DVKA+++ I +NT ++V SAP FPHGI+DP++E+ 
Sbjct:   240 AFDKAAHYFGMKLIHVPLDNKTMKVDVKAMRRAITKNTAMLVCSAPQFPHGIMDPVEEVA 299

Query:   297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSV 356
             +LA+ +    HVD CLGGF++ F +K G+ + PFDF V+GVTSIS D HKYG APKG+SV
Sbjct:   300 KLAVKYNIPFHVDACLGGFLIVFMEKAGFKLAPFDFRVKGVTSISADTHKYGYAPKGSSV 359

Query:   357 VLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAI 416
             VLY NR+ R +Q+    +W GG+Y SP++AGSRPGG+IA  WA +M +G++GY+E T+ +
Sbjct:   360 VLYSNRKFRHYQYFVAPDWQGGIYASPSMAGSRPGGIIAACWATMMHMGEKGYVEATRKV 419

Query:   417 MEVSESIQKGL 427
             +E +  I+ G+
Sbjct:   420 VETTRKIKTGI 430

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

DICTYBASE|DDB_G0282819 sglA "sphingosine-1-phosphate lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 176/416 (42%), Positives = 258/416 (62%)

Query:    17 ANSFLSQYEPVIXXXXXXXXXXXXXXXQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKY 76
             AN +L  Y+P                      A+ ++ FK         SIK +PGV+  
Sbjct:     4 ANDYLKDYQPAKLVLATAGITAASILAYQ---AITDRDFKDKLNKKIFRSIKSMPGVSDI 60

Query:    77 IEAEKQKVVDKMQSGVKSK-REGWWTELPRAGLG-VGVIEKLKE-EKGKDVVW-QGKCSG 132
             ++ E+ K   +++   K+  R   +T LP  G+    +IE++K   K  +  W   K SG
Sbjct:    61 VKKERAKAKVELKKMFKTDVRNAHYT-LPLKGIKHEDLIEEMKALAKVDESHWVDSKVSG 119

Query:   133 TVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASG 192
              VY+G  E   H  L+NEA S+F+ +NPLH  +F S+ +FE E I+M + +L    K   
Sbjct:   120 CVYLGEKE---HTKLLNEAYSLFSLSNPLHPSVFPSIRKFETESISMVSNMLNAHSK--- 173

Query:   193 GQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252
               V G++TSGGTESI +AVK+ RD+ +++    RPE+++PV+ H+A+DKA +Y  I++  
Sbjct:   174 --VVGSLTSGGTESIFMAVKAYRDFYKDRTD--RPEIVVPVTIHAAFDKACEYLKIRIVH 229

Query:   253 VPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311
             + VD   ++ D+ A+KK IN++T+L+ GSA  FPHGIIDPI E+ +LA  +    HVD C
Sbjct:   230 IDVDPVSYKVDMAAMKKAINKDTILVAGSAVNFPHGIIDPIDEIAKLAQQYDIGCHVDAC 289

Query:   312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA 371
             LGGF+LPFA+KL Y IP FDF + GVTS+SVD HK+G A KGTSVVL+ N+++R+  +  
Sbjct:   290 LGGFILPFAEKLDYDIPVFDFRIPGVTSMSVDTHKFGYAAKGTSVVLFGNKKLRRAMYFV 349

Query:   372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
                W GG+Y SPT+ GSRPGGL+A  WA+L+S+G +G+LE  K +ME ++ I KGL
Sbjct:   350 APNWPGGIYASPTLPGSRPGGLVAACWASLVSMGNDGFLEKAKGVMETTKKIIKGL 405

GO:0031276 "negative regulation of lateral pseudopodium assembly" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0006935 "chemotaxis" evidence=ISS;IMP

GO:0006928 "cellular component movement" evidence=ISS;IMP

GO:0001667 "ameboidal cell migration" evidence=IMP

GO:0046956 "positive phototaxis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0031158 "negative regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=ISS

GO:0030587 "sorocarp development" evidence=IMP

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0008219 "cell death" evidence=IMP

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

GO:0030149 "sphingolipid catabolic process" evidence=ISS

GO:0008117 "sphinganine-1-phosphate aldolase activity" evidence=IEA;ISS

GO:0006672 "ceramide metabolic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016829 "lyase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006665 "sphingolipid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E2RME9 SGPL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 172/367 (46%), Positives = 239/367 (65%)

Query:    67 IKLVPGVNKYIEAEKQKVVD---KMQSGVKSKREGWWTELPRAGLGVG-VIEKLKEEKGK 122
             I+ +P + + I+ +  K  D   K  S +K  +E +   LP  GL    V+EKLKE    
Sbjct:    78 IRKMPIIGRKIQDKVNKTKDDISKNMSFLKVDKE-YVKALPSQGLSASAVLEKLKEYSSM 136

Query:   123 DVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTA 181
             D+ WQ GK SG VY G  E      L+ +A   FA +NPLH DIF  + + EAE++ +  
Sbjct:   137 DIFWQEGKASGAVYSGAEELT---ELLVKAYGDFAWSNPLHPDIFPGLRKIEAEIVRIAC 193

Query:   182 ALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK 241
             +L        G   CG +TSGGTESIL+A K+ RD +  + GI  PE++ P SAH+A+DK
Sbjct:   194 SLFNG-----GPDSCGCVTSGGTESILMACKAYRD-LAFENGIKTPEIVAPQSAHAAFDK 247

Query:   242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS 301
             AA YF +K+ RVP++K    DV+A+++ I+RNT ++V S P FPHG+IDP+ E+ +LA+ 
Sbjct:   248 AANYFGMKIIRVPLNKMMEVDVRAMRRAISRNTAMLVCSTPQFPHGVIDPVPEVAKLAVR 307

Query:   302 HGTCLHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
             +   LHVD CLGGF++ F +K GYP+  PFDF V+GVTSIS D HKYG APKG+SV+LY 
Sbjct:   308 YKIPLHVDACLGGFLIVFMEKAGYPLEQPFDFRVKGVTSISADTHKYGYAPKGSSVLLYS 367

Query:   361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
             +++ R HQF   T+W GG+Y SPT+AGSRPGG+ A  WAALM  G+ GY+E TK I++ +
Sbjct:   368 DKKYRSHQFFVATDWQGGIYASPTIAGSRPGGISAACWAALMHFGESGYVEATKQIIKTT 427

Query:   421 ESIQKGL 427
               ++  L
Sbjct:   428 RFLKSEL 434

GO:0060325 "face morphogenesis" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0048008 "platelet-derived growth factor receptor signaling pathway" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0010761 "fibroblast migration" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0008210 "estrogen metabolic process" evidence=IEA

GO:0008209 "androgen metabolic process" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006672 "ceramide metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0001553 "luteinization" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

UNIPROTKB|A5D788 SGPL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 171/367 (46%), Positives = 242/367 (65%)

Query:    67 IKLVPGVNKYIEAEKQKV---VDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEEKGK 122
             I+ +P + + I+ +  K    + K  + +K  ++ +   LP  GL    V+EKLKE   K
Sbjct:    78 IRKMPIIGRKIQDKLNKTKEDISKSMTFLKVDQD-YVKALPSQGLSPAAVLEKLKEYSSK 136

Query:   123 DVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTA 181
             DV+WQ GK SG VY G  E      L+ +A   FA +NPLH DIF  + + EAE++ M  
Sbjct:   137 DVLWQEGKASGAVYSGEKELT---DLLVKAYGDFAWSNPLHPDIFPGLRKIEAEIVRMAC 193

Query:   182 ALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK 241
             +L        G   CG +TSGGTESIL+A K+ R+ +  + GI  PE++ P SAH+A+DK
Sbjct:   194 SLFNG-----GPDSCGCVTSGGTESILMACKAYRE-LAFENGIKTPEIVAPQSAHAAFDK 247

Query:   242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS 301
             AA YF +K+ RVP++K    DV+A+++ I+RNT ++V SAP FPHG+IDPI E+ +LA+ 
Sbjct:   248 AASYFGMKIIRVPLNKMMEVDVRAMRRAISRNTAMLVCSAPQFPHGVIDPIPEVAKLAVK 307

Query:   302 HGTCLHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
             +   LHVD CLGGF++ F +K GYP+  PFDF V+GVTSIS D HKYG APKG+SV+LY 
Sbjct:   308 YKIPLHVDACLGGFLIVFMEKAGYPLEQPFDFRVKGVTSISADTHKYGYAPKGSSVLLYS 367

Query:   361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
             +++ R +QF   T+W GG+Y SPT+AGSRPGG+ A  WA+LM  G+ GY+E TK I++ +
Sbjct:   368 DKKYRSYQFFVATDWQGGIYASPTIAGSRPGGISAACWASLMYFGESGYVEATKQIIKTT 427

Query:   421 ESIQKGL 427
               ++  L
Sbjct:   428 RFLKSEL 434

GO:0060325 "face morphogenesis" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0048008 "platelet-derived growth factor receptor signaling pathway" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0010761 "fibroblast migration" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0008210 "estrogen metabolic process" evidence=IEA

GO:0008209 "androgen metabolic process" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006672 "ceramide metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0001553 "luteinization" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

UNIPROTKB|F1SUB2 SGPL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 171/367 (46%), Positives = 239/367 (65%)

Query:    67 IKLVPGVNKYIEAEKQKVVD---KMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEEKGK 122
             I+ +P + + I+ +  K  D   K  S +K  +E +   LP  GL    V+EKLKE    
Sbjct:    78 IRKMPVIGRKIQDKLNKTKDDISKNMSFLKVDKE-YVKALPSQGLSPAAVLEKLKEYSSL 136

Query:   123 DVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTA 181
             DV WQ GK SG VY G  E      L+ +A   FA +NPLH DIF  + + EAE++ M  
Sbjct:   137 DVSWQEGKASGAVYSGEKELT---ELLVKAYGDFAWSNPLHPDIFPGLRKIEAEIVRMAC 193

Query:   182 ALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK 241
             +L        G   CG +TSGGTESIL+A K+ R+ +  + GI  PE++ P SAH+A+DK
Sbjct:   194 SLFNG-----GPDSCGCVTSGGTESILMACKAYRE-LAFENGIKTPEIVAPQSAHAAFDK 247

Query:   242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS 301
             AA YF +K+ RVP++K    D++A+++ I+RNT ++V S P +PHG+IDP+ E+ +LA+ 
Sbjct:   248 AANYFGMKIIRVPLNKMMEVDIRAMRRAISRNTAMLVCSTPQYPHGVIDPVPEVAKLAVK 307

Query:   302 HGTCLHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
             +   LHVD CLGGF++ F +K GYP+  PFDF V+GVTSIS D HKYG APKG+SVVLY 
Sbjct:   308 YKIPLHVDACLGGFLIVFMEKAGYPLEQPFDFRVKGVTSISADTHKYGYAPKGSSVVLYS 367

Query:   361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
             +++ R +QF   T+W GG+Y SPT+AGSRPGG+ A  WAALM  G+ GY+E TK I++ +
Sbjct:   368 DKKYRNYQFFVATDWQGGIYASPTMAGSRPGGISAACWAALMYFGENGYVEATKQIIKTT 427

Query:   421 ESIQKGL 427
               ++  L
Sbjct:   428 RFLKAEL 434

GO:0060325 "face morphogenesis" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0048008 "platelet-derived growth factor receptor signaling pathway" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0010761 "fibroblast migration" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0008210 "estrogen metabolic process" evidence=IEA

GO:0008209 "androgen metabolic process" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006672 "ceramide metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0001553 "luteinization" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

RGD|628599 Sgpl1 "sphingosine-1-phosphate lyase 1" [Rattus norvegicus (taxid:10116)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 169/366 (46%), Positives = 232/366 (63%)

Query:    67 IKLVPGVNKYIEAEKQKVVDKMQSGVKSKR--EGWWTELPRAGLGVG-VIEKLKEEKGKD 123
             I+ +P + + I+ +  K    +   +   +  + +   LP  GL    V+E+LKE    D
Sbjct:    78 IRKMPFIGRKIQQQLTKAKKDLVKNMPFLKLDKDYVKTLPAQGLSTAEVLERLKEYSSMD 137

Query:   124 VVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAA 182
             V WQ GK SG VY G  +      L+ +A   F  +NPLH DIF  + + EAE++ MT +
Sbjct:   138 VFWQEGKASGAVYSGEPKLT---ELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMTCS 194

Query:   183 LLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242
             L        G   CG +TSGGTESIL+A K+ RD    K GI  PE++ P SAH+A+DKA
Sbjct:   195 LFNG-----GPDSCGCVTSGGTESILMACKAYRDLALEK-GIKTPEIVAPESAHAAFDKA 248

Query:   243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH 302
             A YF +K+ RV   K    DV+A+K+ I+RNT ++V SAP FPHG+IDPI E+ +LA+ +
Sbjct:   249 AHYFGMKIVRVAQKKNMEVDVRAMKRAISRNTAMLVCSAPQFPHGVIDPIPEVAKLAVKY 308

Query:   303 GTCLHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRN 361
                 HVD CLGGF++ F +K GYP+  PFDF V+GVTSIS D HKYG APKG+SVV+Y N
Sbjct:   309 KIPFHVDACLGGFLIVFMEKAGYPLEKPFDFRVKGVTSISADTHKYGYAPKGSSVVMYSN 368

Query:   362 REIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSE 421
              + RK+QF    +W GG+Y SP++AGSRPGG+IA  WAALM  G+ GY+E TK I++ + 
Sbjct:   369 EKYRKYQFFVDADWQGGIYASPSIAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTAR 428

Query:   422 SIQKGL 427
              ++  L
Sbjct:   429 FLKSEL 434

GO:0001553 "luteinization" evidence=IEA;ISO

GO:0001570 "vasculogenesis" evidence=IEA;ISO

GO:0001822 "kidney development" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006672 "ceramide metabolic process" evidence=ISO;ISS

GO:0006807 "nitrogen compound metabolic process" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO;ISS

GO:0007283 "spermatogenesis" evidence=IEA;ISO

GO:0008117 "sphinganine-1-phosphate aldolase activity" evidence=IEA

GO:0008209 "androgen metabolic process" evidence=IEA;ISO

GO:0008210 "estrogen metabolic process" evidence=IEA;ISO

GO:0008585 "female gonad development" evidence=ISO

GO:0009791 "post-embryonic development" evidence=IEA;ISO

GO:0010761 "fibroblast migration" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA;ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA;ISO

GO:0040014 "regulation of multicellular organism growth" evidence=IEA;ISO

GO:0048008 "platelet-derived growth factor receptor signaling pathway" evidence=IEA;ISO

GO:0048705 "skeletal system morphogenesis" evidence=IEA;ISO

GO:0060021 "palate development" evidence=IEA;ISO

GO:0060325 "face morphogenesis" evidence=IEA;ISO

UNIPROTKB|Q8CHN6 Sgpl1 "Sphingosine-1-phosphate lyase 1" [Rattus norvegicus (taxid:10116)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 169/366 (46%), Positives = 232/366 (63%)

Query:    67 IKLVPGVNKYIEAEKQKVVDKMQSGVKSKR--EGWWTELPRAGLGVG-VIEKLKEEKGKD 123
             I+ +P + + I+ +  K    +   +   +  + +   LP  GL    V+E+LKE    D
Sbjct:    78 IRKMPFIGRKIQQQLTKAKKDLVKNMPFLKLDKDYVKTLPAQGLSTAEVLERLKEYSSMD 137

Query:   124 VVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAA 182
             V WQ GK SG VY G  +      L+ +A   F  +NPLH DIF  + + EAE++ MT +
Sbjct:   138 VFWQEGKASGAVYSGEPKLT---ELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMTCS 194

Query:   183 LLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242
             L        G   CG +TSGGTESIL+A K+ RD    K GI  PE++ P SAH+A+DKA
Sbjct:   195 LFNG-----GPDSCGCVTSGGTESILMACKAYRDLALEK-GIKTPEIVAPESAHAAFDKA 248

Query:   243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH 302
             A YF +K+ RV   K    DV+A+K+ I+RNT ++V SAP FPHG+IDPI E+ +LA+ +
Sbjct:   249 AHYFGMKIVRVAQKKNMEVDVRAMKRAISRNTAMLVCSAPQFPHGVIDPIPEVAKLAVKY 308

Query:   303 GTCLHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRN 361
                 HVD CLGGF++ F +K GYP+  PFDF V+GVTSIS D HKYG APKG+SVV+Y N
Sbjct:   309 KIPFHVDACLGGFLIVFMEKAGYPLEKPFDFRVKGVTSISADTHKYGYAPKGSSVVMYSN 368

Query:   362 REIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSE 421
              + RK+QF    +W GG+Y SP++AGSRPGG+IA  WAALM  G+ GY+E TK I++ + 
Sbjct:   369 EKYRKYQFFVDADWQGGIYASPSIAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTAR 428

Query:   422 SIQKGL 427
              ++  L
Sbjct:   429 FLKSEL 434

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|O95470 SGPL1 "Sphingosine-1-phosphate lyase 1" [Homo sapiens (taxid:9606)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 168/364 (46%), Positives = 237/364 (65%)

Query:    70 VPGVNKYIEAEKQKVVD---KMQSGVKSKREGWWTELPRAGLGVG-VIEKLKEEKGKDVV 125
             +P + + I+ +  K  D   K  S +K  +E +   LP  GL    V+EKLKE    D  
Sbjct:    81 MPIIGRKIQDKLNKTKDDISKNMSFLKVDKE-YVKALPSQGLSSSAVLEKLKEYSSMDAF 139

Query:   126 WQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALL 184
             WQ G+ SGTVY G  +      L+ +A   FA +NPLH DIF  + + EAE++ +  +L 
Sbjct:   140 WQEGRASGTVYSGEEKLT---ELLVKAYGDFAWSNPLHPDIFPGLRKIEAEIVRIACSLF 196

Query:   185 GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ 244
                    G   CG +TSGGTESIL+A K+ RD +  ++GI  PE++ P SAH+A++KAA 
Sbjct:   197 NG-----GPDSCGCVTSGGTESILMACKAYRD-LAFEKGIKTPEIVAPQSAHAAFNKAAS 250

Query:   245 YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGT 304
             YF +K+ RVP+ K    DV+A+++ I+RNT ++V S P FPHG+IDP+ E+ +LA+ +  
Sbjct:   251 YFGMKIVRVPLTKMMEVDVRAMRRAISRNTAMLVCSTPQFPHGVIDPVPEVAKLAVKYKI 310

Query:   305 CLHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
              LHVD CLGGF++ F +K GYP+  PFDF V+GVTSIS D HKYG APKG+S+VLY +++
Sbjct:   311 PLHVDACLGGFLIVFMEKAGYPLEHPFDFRVKGVTSISADTHKYGYAPKGSSLVLYSDKK 370

Query:   364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
              R +QF   T+W GG+Y SPT+AGSRPGG+ A  WAALM  G+ GY+E TK I++ +  +
Sbjct:   371 YRNYQFFVDTDWQGGIYASPTIAGSRPGGISAACWAALMHFGENGYVEATKQIIKTARFL 430

Query:   424 QKGL 427
             +  L
Sbjct:   431 KSEL 434

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0001553 "luteinization" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008209 "androgen metabolic process" evidence=IEA

GO:0008210 "estrogen metabolic process" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0010761 "fibroblast migration" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0048008 "platelet-derived growth factor receptor signaling pathway" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0060325 "face morphogenesis" evidence=IEA

GO:0008117 "sphinganine-1-phosphate aldolase activity" evidence=NAS

GO:0030149 "sphingolipid catabolic process" evidence=NAS

GO:0006915 "apoptotic process" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006665 "sphingolipid metabolic process" evidence=TAS

GO:0030148 "sphingolipid biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

FB|FBgn0010591 Sply "Sphingosine-1-phosphate lyase" [Drosophila melanogaster (taxid:7227)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 167/372 (44%), Positives = 234/372 (62%)

Query:    63 FMSSIKLVPGVNKYIEAEKQKVVDKMQSGVK-SKREGWWTE-LPRAGLGVGVIEKLKEE- 119
             F    K +P V + +E E  K  +  ++ +K S     ++E LP  GL    I +L +E 
Sbjct:    61 FFKFAKKIPAVRRQVETELAKAKNDFETEIKKSNAHLTYSETLPEKGLSKEEILRLVDEH 120

Query:   120 -KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVI 177
              K     W+ G+ SG VY  G + +    L+ E     ++TNPLH D+F  V + EAEV+
Sbjct:   121 LKTGHYNWRDGRVSGAVY--GYKPD-LVELVTEVYGKASYTNPLHADLFPGVCKMEAEVV 177

Query:   178 AMTAALL-GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH 236
              M   L  GN   AS    CG MT+GGTESI++A+K+ RD+ R  +GITRP +++P + H
Sbjct:   178 RMACNLFHGNS--AS----CGTMTTGGTESIVMAMKAYRDFAREYKGITRPNIVVPKTVH 231

Query:   237 SAYDKAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQEL 295
             +A+DK  QYFNI +  V VD E +  D+K  K+ INRNT+L+VGSAP FP+G ID I+ +
Sbjct:   232 AAFDKGGQYFNIHVRSVDVDPETYEVDIKKFKRAINRNTILLVGSAPNFPYGTIDDIEAI 291

Query:   296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTS 355
               L + +   +HVD CLG FV+   +  GY + PFDF V+GVTSIS D HKYG APKG+S
Sbjct:   292 AALGVKYDIPVHVDACLGSFVVALVRNAGYKLRPFDFEVKGVTSISADTHKYGFAPKGSS 351

Query:   356 VVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKA 415
             V+LY +++ + HQF   T+W GG+Y SPTV GSR GG+IA  WA +MS G +GYLE TK 
Sbjct:   352 VILYSDKKYKDHQFTVTTDWPGGVYGSPTVNGSRAGGIIAACWATMMSFGYDGYLEATKR 411

Query:   416 IMEVSESIQKGL 427
             I++ +  I++G+
Sbjct:   412 IVDTARYIERGV 423

GO:0008117 "sphinganine-1-phosphate aldolase activity" evidence=IDA;NAS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=NAS

GO:0030149 "sphingolipid catabolic process" evidence=IMP;NAS

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q52RG7	SGPL_ORYSJ	4, ., 1, ., 2, ., 2, 7	0.6914	0.9703	0.7884	yes	no
Q9C509	SGPL_ARATH	4, ., 1, ., 2, ., 2, 7	0.7364	0.9703	0.7812	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.1.2.27	0.946
3rd Layer	4.1.2	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	438
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	4e-77
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	8e-72
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	1e-67
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	3e-67
TIGR01788	431	TIGR01788, Glu-decarb-GAD, glutamate decarboxylase	2e-25
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	2e-18
PRK02769	380	PRK02769, PRK02769, histidine decarboxylase; Provi	9e-12
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	3e-11
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	6e-11
PRK02948	381	PRK02948, PRK02948, cysteine desulfurase; Provisio	4e-10
TIGR03235	353	TIGR03235, DNA_S_dndA, cysteine desulfurase DndA	7e-10
TIGR03402	379	TIGR03402, FeS_nifS, cysteine desulfurase NifS	6e-09
TIGR03799	522	TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend	1e-08
PLN02651	364	PLN02651, PLN02651, cysteine desulfurase	5e-07
TIGR02006	402	TIGR02006, IscS, cysteine desulfurase IscS	7e-07
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	9e-07
TIGR01977	376	TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa	1e-05
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	2e-05
TIGR03403	382	TIGR03403, nifS_epsilon, cysteine desulfurase, Nif	3e-05
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	6e-05
PRK14012	404	PRK14012, PRK14012, cysteine desulfurase; Provisio	1e-04
TIGR01264	401	TIGR01264, tyr_amTase_E, tyrosine aminotransferase	1e-04
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	5e-04
TIGR03811	608	TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase,	5e-04
TIGR01265	403	TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine	9e-04
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	0.001
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	0.001
cd00613	398	cd00613, GDC-P, Glycine cleavage system P-protein,	0.002
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	0.003
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	0.004

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score =  246 bits (631), Expect = 4e-77
 Identities = 105/288 (36%), Positives = 158/288 (54%), Gaps = 19/288 (6%)

Query: 150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILL 209
           E      + N    D   + A  E  V+ M + LLG  E+ASG       TSGGTE+ LL
Sbjct: 80  ELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASG-----TFTSGGTEANLL 134

Query: 210 AVKSSRDYMRNKRG------ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRAD 262
           A+ ++R+  R +          +P ++   +AH +++KAA+Y  + L RVP    ++R D
Sbjct: 135 ALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRID 194

Query: 263 VKAIKKYINRNTVL--IVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320
           V A+++ I+ NT+   +VG+A     G ID I+EL ++A  +G  LHVD   GGF+LPF 
Sbjct: 195 VDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFL 254

Query: 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE-IRKHQFVAVTEWSGGL 379
           +  G     +DF ++GV SI+VD HKYGLAP G  VVL+R+ E +R+    A     GG 
Sbjct: 255 EPDGR----WDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGG 310

Query: 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
             + T+ GSRPG      +A L  LG+EGY +     +E++  + + L
Sbjct: 311 IPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEEL 358

Length = 460

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score =  230 bits (589), Expect = 8e-72
 Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 26/283 (9%)

Query: 150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILL 209
           +A  MF  TN     +F   A+ E E + M   LL   +        G +TSGGTE+ + 
Sbjct: 38  KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAY------GYITSGGTEANIQ 91

Query: 210 AVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKY 269
           AV++     RN     +P +++P SAH ++DKAA    ++L R P+D ++R DVKA++  
Sbjct: 92  AVRA----ARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDL 147

Query: 270 INRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329
           I+ NT+ IVG A     G +DPI EL ++AL +G  LHVD   GGFV+PF        P 
Sbjct: 148 IDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDP----PN 203

Query: 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-----QFVAVTEWSGGLYVSPT 384
           FDFS+ GV SI++D HK GLAP     +L+R+            ++             T
Sbjct: 204 FDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSK-------KQAT 256

Query: 385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
           + G+R G  +A  +A +  LG+EGY +  +  ME +  + + L
Sbjct: 257 LTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEEL 299

Length = 371

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score =  219 bits (560), Expect = 1e-67
 Identities = 108/316 (34%), Positives = 171/316 (54%), Gaps = 16/316 (5%)

Query: 112 VIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVAR 171
           V+E+LKE + +D+ +     G +   GS       +  +A  MF  TN     +F    +
Sbjct: 5   VLEELKEYRSEDLKYS---DGRIL--GSMCTNPHPIAVKAYDMFIETNLGDPGLFPGTKK 59

Query: 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231
            E EV+     LL   +        G + SGGTE+ + AV+++++  R ++    P +I+
Sbjct: 60  IEEEVVGSLGNLLHLPD------AYGYIVSGGTEANIQAVRAAKNLAREEKR--TPNIIV 111

Query: 232 PVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP 291
           P SAH +++KAA+   ++L   P+D+++  DVK ++  I+ NT+ IVG A     G ID 
Sbjct: 112 PESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD 171

Query: 292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP 351
           I+EL ++AL +G  LHVD   GGFV+PF KK GY  PPFDFS+ GV SI++D HK GL+P
Sbjct: 172 IEELSKIALENGIYLHVDAAFGGFVIPFLKK-GYNPPPFDFSLPGVQSITIDPHKMGLSP 230

Query: 352 KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLE 411
                +L+R++   K+  V     +       T+ G+R G   A  +A +  LG+EGY +
Sbjct: 231 IPAGGILFRSKSYLKYLSVDAPYLTVK--KQATITGTRSGASAAATYAVIKYLGREGYRK 288

Query: 412 NTKAIMEVSESIQKGL 427
                ME +  + + L
Sbjct: 289 IVAECMENTRYLVEEL 304

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score =  217 bits (555), Expect = 3e-67
 Identities = 88/293 (30%), Positives = 134/293 (45%), Gaps = 56/293 (19%)

Query: 147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTES 206
           L     +  A       D   +    EAEV+   A L G           G  TSGG+ES
Sbjct: 16  LEMLTSAKNAIDFTW--DESPAATEMEAEVVNWLAKLFG----LPSEDADGVFTSGGSES 69

Query: 207 ILLAVKSSRDYMRNK------RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFR 260
            LLA+ ++RD  R +      RGI +  ++    AH + +KAA Y ++K+  VPVD++ R
Sbjct: 70  NLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGR 129

Query: 261 ADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314
            D +A++  I+       N +++V +A     G IDP++E+ +LA  +   LHVD   GG
Sbjct: 130 MDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189

Query: 315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE 374
           F+LPF +         DF ++ V SISVD HKYGL P G S VL R              
Sbjct: 190 FLLPFPEPRHL-----DFGIERVDSISVDPHKYGLVPLGCSAVLVR-------------- 230

Query: 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
                                  WA L   G++GY E+   I+++++ + + +
Sbjct: 231 -------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELI 264

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase

 Score =  107 bits (269), Expect = 2e-25
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 16/243 (6%)

Query: 190 ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR-----GITRPEMIIPVSAHSAYDKAAQ 244
           A   +  G  T G +E+I+L   + +   R +         +P +++  +    ++K A+
Sbjct: 97  AKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFAR 156

Query: 245 YFNIKLWRVPVDKEFRA-DVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQE----LGELA 299
           YF+++L  VP+D      D + + + ++ NT+ +V        G  + ++     L E  
Sbjct: 157 YFDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYN 216

Query: 300 LSHG--TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVV 357
              G    +HVD   GGF+ PF     YP   +DF +  V SI+V  HKYGL   G   V
Sbjct: 217 AKTGWDIPIHVDAASGGFIAPFV----YPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWV 272

Query: 358 LYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIM 417
           ++R+ E    + +    + GG   + T+  SRP   +   +   + LG+EGY +  +  +
Sbjct: 273 IWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSL 332

Query: 418 EVS 420
           +V+
Sbjct: 333 DVA 335

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). Length = 431

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 32/280 (11%)

Query: 173 EAEVIAMT--AALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYM------RNKRG 223
           E E + M   A +LG  KE    G+  G +  G +ES LLA+ ++R           K  
Sbjct: 79  ELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLALLAARTKWIRRMKAAGKPS 138

Query: 224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYI-----NRNTVLIV 278
           + +        AHS+ +KAA    ++L  +P D+  +     ++K I     N      V
Sbjct: 139 LGKLVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFV 198

Query: 279 GSAPGFP-HGIIDPIQELGELALSHGTCLHVDLCLGG--FVLPFAKKLGYPIPPFDFSVQ 335
            +  G    G  DP+QELG++   +   LHVD    G  F+ P           + F ++
Sbjct: 199 CATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAGSAFICPE-------FRHWLFGIE 251

Query: 336 GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP----- 390
              S S + HK+ L     S +  R++   +       E+ G       VA         
Sbjct: 252 RADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDWQIP 311

Query: 391 ---GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
                 I   W  L S G EG     +  +E+++  +  +
Sbjct: 312 LSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALV 351

Length = 373

>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 68/264 (25%), Positives = 115/264 (43%), Gaps = 41/264 (15%)

Query: 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231
           FE +V+   A L       S G +    T+GGTE  L     +R+          P+  +
Sbjct: 66  FERDVMNFFAELFKIPFNESWGYI----TNGGTEGNLYGCYLARELF--------PDGTL 113

Query: 232 PVS--AHSAYDKAAQYFNIKLWRVP--VDKEFRAD--VKAIKKYINRNTVLI--VGSAPG 283
             S   H +  K A+   IK   +    + E   D  +  IK+  N+  ++   +G+   
Sbjct: 114 YYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTM- 172

Query: 284 FPHGIIDPIQELGELALSHGT---CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSI 340
              G ID I+E+ E+    G     +H D  L G +LPF        PPF F+  G+ SI
Sbjct: 173 --TGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVN----NPPPFSFA-DGIDSI 225

Query: 341 SVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP---TVAGSRPGGLIAGA 397
           ++  HK+  +P    +VL + ++  +   V V       Y+     T++GSR G      
Sbjct: 226 AISGHKFIGSPMPCGIVLAK-KKYVERISVDVD------YIGSRDQTISGSRNGHTALLL 278

Query: 398 WAALMSLGQEGYLENTKAIMEVSE 421
           WAA+ SLG +G  +  +  +++++
Sbjct: 279 WAAIRSLGSKGLRQRVQHCLDMAQ 302

Length = 380

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 48/194 (24%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPV 255
           TSG TE+I L   S    ++        E+++    H A    + + A+     +  +PV
Sbjct: 67  TSGTTEAINLVAISLGRSLKPGD-----EILVTEMEHHANLVPWQELAKRTGATVRVIPV 121

Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315
           D     D+ A++K +   T L+  +      G ++P++E+G+LA  +G  + VD      
Sbjct: 122 DPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVD------ 175

Query: 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-----------LAPKGTSVVLYRNREI 364
                            + Q V    +DV   G             P G   VLY     
Sbjct: 176 -----------------AAQAVGHRPIDVQALGVDFLAFSGHKLYGPTGIG-VLY----G 213

Query: 365 RKHQFVAVTEWSGG 378
           R+     +    GG
Sbjct: 214 RRDLLEKLPPLLGG 227

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 34/179 (18%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY-----FNIKLWRVP 254
           TSG TES  LA+K +    RN +      +I     H A     +Y     F +    +P
Sbjct: 67  TSGATESNNLAIKGAALAYRNAQK--GKHIITSAIEHPAVLNTCRYLERQGFEVT--YLP 122

Query: 255 VDKEFRADVKAIKKYINRNTVLI-VGSAPGFPH---GIIDPIQELGELALSHGTCLHVDL 310
           VD     D++ +++ +  +T+L+ +  A    +   G I PI E+GE+    G   HVD 
Sbjct: 123 VDSNGLVDLEQLEEALRPDTILVSIMHA----NNETGTIQPIAEIGEICKERGILFHVDA 178

Query: 311 C--LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH 367
              +G        K+     P D    GV  +S   HK+G  PKG    LY    +R  
Sbjct: 179 VQAVG--------KI-----PIDLEELGVDLLSFSAHKFG-GPKGIG-ALYVRPGVRLE 222

Length = 386

>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 32/194 (16%)

Query: 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKS-SRDYMRNKRGITRPEMIIPVSAHSAY 239
           A ++G +E+          TSGGTES  LA++S      +NK+ I    M       S +
Sbjct: 53  AEMIGGEEQGI------YFTSGGTESNYLAIQSLLNALPQNKKHIITTPM----EHASIH 102

Query: 240 DKAAQY----FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQEL 295
                     + +    +PVDK     +  +++ I  +TVL          G I PI E+
Sbjct: 103 SYFQSLESQGYTVTE--IPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEI 160

Query: 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHK-YGLAPKGT 354
           G L   +    H D C    V  F K       P D    G+ S+SV  HK YG  PKG 
Sbjct: 161 GALLKKYNVLFHSD-C----VQTFGKL------PIDVFEMGIDSLSVSAHKIYG--PKGV 207

Query: 355 SVVLYRNREIRKHQ 368
             V Y N ++R   
Sbjct: 208 GAV-YINPQVRWKP 220

Length = 381

>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 52/197 (26%), Positives = 72/197 (36%), Gaps = 24/197 (12%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV---PVD 256
           TSG TES  LA+         K    +  +I     H A  +  +      + V   PVD
Sbjct: 65  TSGATESNNLAILGLARAGEQK---GKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD 121

Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
           +  R DV  +   I  +T+L+         G I PI+E+ E+  +H    HVD       
Sbjct: 122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQV--- 178

Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS 376
               K         D S   +  IS   HK    PKG   ++ R R   K     +  + 
Sbjct: 179 --VGKIT------VDLSADRIDLISCSGHKIY-GPKGIGALVIRKRGKPKAPLKPIM-FG 228

Query: 377 GGLYVSPTVAGSRPGGL 393
           GG        G RPG L
Sbjct: 229 GG-----QERGLRPGTL 240

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353

>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 53/182 (29%), Positives = 71/182 (39%), Gaps = 49/182 (26%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF---NIKLWRVPVD 256
           TSGGTES   A+KS+      KR I     I     H A     Q+      K+  +PVD
Sbjct: 65  TSGGTESDNTAIKSALAAQPEKRHI-----ITTAVEHPAVLSLCQHLEKQGYKVTYLPVD 119

Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
           +E R D++ ++  I  +T L+         G I PI+E+GE+A   G   H D       
Sbjct: 120 EEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTD------- 172

Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDV------------HKYGLAPKGTSVVLYRNREI 364
                           +VQ V  I +D+            HK    PKG    LY    I
Sbjct: 173 ----------------AVQAVGKIPIDLKEMNIDMLSLSGHKL-HGPKGVG-ALY----I 210

Query: 365 RK 366
           RK
Sbjct: 211 RK 212

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379

>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 66/248 (26%), Positives = 103/248 (41%), Gaps = 46/248 (18%)

Query: 197 GNMTSGGTESILLAVKSSRDYMRNK--------RGITRPEMI------------IPVS-- 234
           G   SGGT + + A+  +R    N+        +G+ R  +             I VS  
Sbjct: 162 GAFCSGGTVANITALWVAR----NRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSER 217

Query: 235 AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKA----IKKYINRNT--VLIVGSAPGFP 285
            H +  KAA    I    L  +  D   R DV A      +   +N   + IVG A    
Sbjct: 218 GHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTE 277

Query: 286 HGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVH 345
            G IDP+ E+ ++A   G   HVD   GG  L  +    + +      ++   S+++D H
Sbjct: 278 TGNIDPLDEMADIAQELGCHFHVDAAWGGATL-LSNTYRHLLK----GIERADSVTIDAH 332

Query: 346 KYGLAPKGTSVVLYRN----REIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401
           K    P G  +VL+++      I  H    + + S  L  S T+ GSRPG  +   +A L
Sbjct: 333 KQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLG-SHTLEGSRPGMAML-VYAGL 390

Query: 402 MSLGQEGY 409
             +G++GY
Sbjct: 391 HIIGRKGY 398

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522

>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV---PVD 256
           TSG TES  LA+K    + ++K+      +I   + H     + ++   + + V   PV 
Sbjct: 66  TSGATESNNLAIKGVMHFYKDKK----KHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK 121

Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
            +   D+  +   I  +T L+   A     G+I P++E+GEL        H D       
Sbjct: 122 SDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDA------ 175

Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
              A+ +G    P D    GV  +S+  HK    PKG   +  R R 
Sbjct: 176 ---AQAVGK--IPVDVDDLGVDLMSISGHKIY-GPKGVGALYVRRRP 216

Length = 364

>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 22/170 (12%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN---IKLWRVPVD 256
           TSG TES  LA+K    + ++K       +I   + H A     +Y      ++  +P  
Sbjct: 70  TSGATESNNLAIKGIAHFYKSKGN----HIITSKTEHKAVLDTCRYLEREGFEVTYLPPK 125

Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
                D++ +K  I  +T+L+         G+I  I  +GE+        HVD       
Sbjct: 126 SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQS--- 182

Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNREIR 365
               K       P + +   V  +S+  HK YG  PKG    LY  R+ R
Sbjct: 183 --VGKI------PINVNELKVDLMSISGHKIYG--PKGIG-ALYVRRKPR 221

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 37/246 (15%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPV 255
           T G TE++ L  +     ++        E+++    H +    + + A+    K+  +P+
Sbjct: 90  TRGTTEALNLVARGLGRSLKP-----GDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPL 144

Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315
           D +   D+ A++K I   T L+  S      G ++P++E+ ELA  HG  + VD      
Sbjct: 145 DDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQA-- 202

Query: 316 VLPFAKKLGYPIP--PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT 373
                          P D    G   ++   HK+ L P G   VLY  +E+ +     + 
Sbjct: 203 -----------AGHLPIDVQELGCDFLAFSGHKWLLGPTGIG-VLYVRKELLEELEPFLG 250

Query: 374 EWSGGLYVSPT------------VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSE 421
                 YVS               AG+       G  AAL  L + G         E++E
Sbjct: 251 GGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTE 310

Query: 422 SIQKGL 427
            + +GL
Sbjct: 311 YLLEGL 316

Length = 405

>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 11/116 (9%)

Query: 247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCL 306
            +++  V  D E     + IK+ I  NT LIV S      G I PI+E+GELA  +G   
Sbjct: 111 GVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIF- 169

Query: 307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362
                   F+L  A+  G  + P D +   +  ++   HK  L P+GT  +  R  
Sbjct: 170 --------FILDAAQTAG--VIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREG 215

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 45.9 bits (110), Expect = 2e-05
 Identities = 47/186 (25%), Positives = 70/186 (37%), Gaps = 56/186 (30%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPV 255
           T   TE+I L          NK G    E++  V  H +    + + A+    KL  VPV
Sbjct: 67  TRNTTEAINLVAYGLG--RANKPG---DEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPV 121

Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQELGELALSHGTCLHVDL 310
           D + + D++A++K +   T L+        H     G I+P++E+GE+A   G  + VD 
Sbjct: 122 DDDGQLDLEALEKLLTERTKLVA-----VTHVSNVLGTINPVKEIGEIAHEAGVPVLVDG 176

Query: 311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HKYGLAPKGTSVVL 358
                                   Q    + VDV            HK  L P G   VL
Sbjct: 177 A-----------------------QSAGHMPVDVQDLGCDFLAFSGHK-MLGPTGIG-VL 211

Query: 359 YRNREI 364
           Y   E+
Sbjct: 212 YGKEEL 217

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 199 MTSGGTESILLAVKS-SRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN---IKLWRVP 254
           +TS  TES    +K    D +       +  +I     H A      +     +++  +P
Sbjct: 65  ITSCATESNNWVLKGVYFDEILKG---GKNHIITTEVEHPAVRATCAFLESLGVEVTYLP 121

Query: 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314
           ++++     + +++ I   T L+         G+I PI+E+GE+    G   H D     
Sbjct: 122 INEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDA---- 177

Query: 315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRN 361
            V    K       P D    GV  +S   HK+   PKG   +  R 
Sbjct: 178 -VQAIGKI------PVDVQKAGVDFLSFSAHKFH-GPKGVGGLYIRK 216

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score = 44.8 bits (107), Expect = 6e-05
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 22/114 (19%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPV-- 255
           T+GG+E+IL A+ +          I  P  E+++P   ++ Y+  A    +K+  VPV  
Sbjct: 94  TNGGSEAILFAMMA----------ICDPGDEILVPEPFYANYNGFATSAGVKI--VPVTT 141

Query: 256 --DKEFR-ADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHG 303
             ++ F     + I+K I   T  I+ S PG P G++   + ++ L E+A  H 
Sbjct: 142 KIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHD 195

Length = 397

>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDKAAQYFNIKLWRV---PV 255
           TSG TES  LA+K +  + + K      + II   + H A     +    + + V     
Sbjct: 72  TSGATESDNLAIKGAAHFYQKKG-----KHIITSKTEHKAVLDTCRQLEREGFEVTYLDP 126

Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315
                 D++ ++  +  +T+L+         G+I  I  +GE+    G   HVD      
Sbjct: 127 QSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQS-- 184

Query: 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNREIR 365
                 K+     P D S   V  +S   HK YG  PKG    LY  R+ R
Sbjct: 185 ----VGKV-----PIDLSKLKVDLMSFSAHKIYG--PKGIG-ALYVRRKPR 223

Length = 404

>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 15/141 (10%)

Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI--KLWRVPVD 256
           + SG + +I + + +  +  +N        +++P      Y   A+   I  KL+ +  D
Sbjct: 100 LCSGCSHAIEMCIAALANAGQN--------ILVPRPGFPLYRTLAESMGIEVKLYNLLPD 151

Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGE-LALSHGTCLHV--DLCLG 313
           K +  D+K ++  I+  T  +V + P  P G +   Q L E LA++   CL +  D   G
Sbjct: 152 KSWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYG 211

Query: 314 GFVLPFAKKLGYPIPPFDFSV 334
             V   A     P+     +V
Sbjct: 212 DMVFSGATF--EPVASLSSNV 230

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 37/259 (14%)

Query: 126 WQGKCSGTVYIGGSEAEGHF-SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMT--AA 182
           WQ       Y   +   G    ++N   S+   T         S A  E E+I +   A 
Sbjct: 128 WQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFT------WLTSPAATELEIIVLDWLAK 181

Query: 183 LLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR-PEMIIPVS--AHSA 238
           LL   +   S G   G +   G E++L+ V ++RD +  K G T  P++++  S   HS+
Sbjct: 182 LLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSS 241

Query: 239 YDKAA-----QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGF--------P 285
           + KA         NI+L +      +    +++++ I+ +  L  G  P F         
Sbjct: 242 FRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHD--LAKGFIPFFICATVGTTS 299

Query: 286 HGIIDPIQELGELALSHGTCLHVDLCLGG--FVLPFAKKLGYPIPPFDFSVQGVTSISVD 343
              +DP+  LG +A  +G  LHVD    G   + P  +K       F   ++   S +++
Sbjct: 300 SAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRK-------FIDGIENADSFNMN 352

Query: 344 VHKYGLAPKGTSVVLYRNR 362
            HK+  A +  S +  ++R
Sbjct: 353 AHKWLFANQTCSPLWVKDR 371

Length = 539

>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus type

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 230 IIPVSAHSAYDKAAQYFNIKLWRV---PVDKEFRADVKAIKKYINR------NTVLIVGS 280
           ++P + H ++ KAA    I L +V   PVD  +R D+  ++K I +        + +VG 
Sbjct: 226 LVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGV 285

Query: 281 APGFPHGIIDPIQELGELA---LSHGT--CLHVDLCLGGF 315
                 G +D I ++  L    +  G    LHVD   GG+
Sbjct: 286 VGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGY 325

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis [Cellular processes, Adaptations to atypical conditions]. Length = 608

>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 13/128 (10%)

Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI--KLWRVPVD 256
           +TSG +++I + +++  +   N        +++P      YD  A +  +  +L+ +  +
Sbjct: 101 LTSGCSQAIEICIEALANPGAN--------ILVPRPGFPLYDTRAAFSGLEVRLYDLLPE 152

Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLG 313
           K++  D+  ++   +  TV IV   P  P G +   D +Q++ E+A   G  +  D   G
Sbjct: 153 KDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYG 212

Query: 314 GFVLPFAK 321
             V   A 
Sbjct: 213 HMVFGDAP 220

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231
              E+    A LL                  GT +   A+ +    +     +     I+
Sbjct: 1   KLEELEEKLARLLQPGNDK------AVFVPSGTGANEAALLA---LLGPGDEV-----IV 46

Query: 232 PVSAH-SAYDKAA--QYFNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHG 287
             + H S Y  AA           V        DV  +++     N  LIV +      G
Sbjct: 47  DANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGG 106

Query: 288 IIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP--PFDFSVQGVTSISVDVH 345
           ++ P++E+ ++A  +G  L VD          +   G  IP    D            +H
Sbjct: 107 VLVPLKEIRKIAKEYGILLLVD---AASAGGASPAPGVLIPEGGADVVTFS-------LH 156

Query: 346 KYGLAPKGTSVVLYR 360
           K  L  +G  VV+ +
Sbjct: 157 KN-LGGEGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 18/126 (14%)

Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256
           +T+G  E++ LA             +  P  E++IP   + +Y+ A +    K   VP+D
Sbjct: 94  VTAGAKEALFLAF----------LALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLD 143

Query: 257 KE---FRADVKAIKKYINRNTVLIVGSAPGFPHG-IIDP--IQELGELALSHGTCLHVDL 310
           +E   F+ D++ ++  I   T  I+ ++P  P G +     ++ + ELA  H   +  D 
Sbjct: 144 EEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDE 203

Query: 311 CLGGFV 316
                V
Sbjct: 204 IYEELV 209

Length = 393

>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 218 MRNKRGITRPEMIIPVSAHSAYDK----AAQYFNIKLWRVPVDKEFRADVKAIKKYINRN 273
              +    R ++++P SAH           +   I++  VP D+    D++A+K+ ++  
Sbjct: 100 AAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE 159

Query: 274 TVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVD 309
              ++   P    G+  D I+E+ ++A S G  ++VD
Sbjct: 160 VAALMVQYPNT-LGVFEDLIKEIADIAHSAGALVYVD 195

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. Length = 398

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 21/166 (12%)

Query: 168 SVARFEAEVIAMT--AALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224
           S A  E E+I +   A LL   E+  S G   G +    +E++L+ + ++RD +  K G 
Sbjct: 117 SPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK 176

Query: 225 TRPEMIIPVSA---HSAYDKAAQYF-----NIKLWRVPVDKEFRADVKAIKKYINRNTVL 276
              E ++  ++   HSA  KA Q       N +L +      +    + + + I+ +  L
Sbjct: 177 NALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTD--L 234

Query: 277 IVGSAPGF--------PHGIIDPIQELGELALSHGTCLHVDLCLGG 314
             G  P F            +DP+ ELG++A S+G   HVD    G
Sbjct: 235 SSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAG 280

Length = 490

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 53/185 (28%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPV 255
           T G TESI L   S  D    K G    E++I    H A    +   A+     L  +P+
Sbjct: 86  TRGTTESINLVAYSWGD-SNLKAG---DEIVISEMEHHANIVPWQLLAERTGATLKFIPL 141

Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQELGELALSHGTCLHVDL 310
           D +   D+  ++K +   T L+        H     G ++P++E+ +LA   G  + VD 
Sbjct: 142 DDDGTLDLDDLEKLLTEKTKLV-----AITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDG 196

Query: 311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-----------LAPKGTSVVLY 359
                                   Q V  + VDV                 P G   VLY
Sbjct: 197 A-----------------------QAVPHMPVDVQALDCDFYVFSGHKMYGPTGIG-VLY 232

Query: 360 RNREI 364
              E+
Sbjct: 233 GKEEL 237

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	100.0
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	100.0
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	100.0
PLN02590	539	probable tyrosine decarboxylase	100.0
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	100.0
PLN02880	490	tyrosine decarboxylase	100.0
PLN02263	470	serine decarboxylase	100.0
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	100.0
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	100.0
PLN03032	374	serine decarboxylase; Provisional	100.0
PRK02769	380	histidine decarboxylase; Provisional	100.0
KOG0629	510	consensus Glutamate decarboxylase and related prot	100.0
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	100.0
PRK13520	371	L-tyrosine decarboxylase; Provisional	100.0
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	100.0
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.97
PLN02651	364	cysteine desulfurase	99.97
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.97
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.97
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.96
PRK05367	954	glycine dehydrogenase; Provisional	99.96
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.96
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.96
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.96
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.96
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.95
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.95
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.95
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.95
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.95
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.95
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.95
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.95
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.95
PRK14012	404	cysteine desulfurase; Provisional	99.95
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.95
PRK02948	381	cysteine desulfurase; Provisional	99.94
PRK12566	954	glycine dehydrogenase; Provisional	99.94
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.93
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.93
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.93
PLN02409	401	serine--glyoxylate aminotransaminase	99.93
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.93
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.93
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.92
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.92
PRK05367	954	glycine dehydrogenase; Provisional	99.92
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.91
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.91
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.91
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.91
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.9
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.89
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.89
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.89
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.88
PLN02724	805	Molybdenum cofactor sulfurase	99.88
PRK12566	954	glycine dehydrogenase; Provisional	99.88
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.87
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.87
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.87
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.85
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.85
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.84
PRK06108	382	aspartate aminotransferase; Provisional	99.84
PRK08361	391	aspartate aminotransferase; Provisional	99.84
PRK05957	389	aspartate aminotransferase; Provisional	99.84
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.84
PRK03080	378	phosphoserine aminotransferase; Provisional	99.83
PRK08776	405	cystathionine gamma-synthase; Provisional	99.83
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.83
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.83
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.83
PRK08861	388	cystathionine gamma-synthase; Provisional	99.83
PRK05764	393	aspartate aminotransferase; Provisional	99.83
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.83
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.82
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.82
PRK07811	388	cystathionine gamma-synthase; Provisional	99.82
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.82
PRK08064	390	cystathionine beta-lyase; Provisional	99.82
PLN02271	586	serine hydroxymethyltransferase	99.82
PLN02509	464	cystathionine beta-lyase	99.82
PRK07050	394	cystathionine beta-lyase; Provisional	99.82
PRK09028	394	cystathionine beta-lyase; Provisional	99.82
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.82
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.82
PRK08574	385	cystathionine gamma-synthase; Provisional	99.82
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.82
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.82
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.81
PRK08045	386	cystathionine gamma-synthase; Provisional	99.81
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.81
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.81
PRK07503	403	methionine gamma-lyase; Provisional	99.81
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.81
PLN02721	353	threonine aldolase	99.81
PRK08249	398	cystathionine gamma-synthase; Provisional	99.81
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.81
PRK06767	386	methionine gamma-lyase; Provisional	99.81
PRK07671	377	cystathionine beta-lyase; Provisional	99.81
PRK08114	395	cystathionine beta-lyase; Provisional	99.81
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.8
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.8
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.8
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.8
PRK06207	405	aspartate aminotransferase; Provisional	99.8
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.8
PRK07179	407	hypothetical protein; Provisional	99.8
PRK06225	380	aspartate aminotransferase; Provisional	99.8
PRK05968	389	hypothetical protein; Provisional	99.8
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.8
PLN00175	413	aminotransferase family protein; Provisional	99.8
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.8
PRK06234	400	methionine gamma-lyase; Provisional	99.8
PLN02368	407	alanine transaminase	99.8
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.8
PRK07337	388	aminotransferase; Validated	99.79
PRK08912	387	hypothetical protein; Provisional	99.79
PLN02656	409	tyrosine transaminase	99.79
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.79
PRK05939	397	hypothetical protein; Provisional	99.79
PRK08363	398	alanine aminotransferase; Validated	99.79
PRK08960	387	hypothetical protein; Provisional	99.79
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.79
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.79
PRK07682	378	hypothetical protein; Validated	99.79
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.79
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.79
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.79
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.79
PRK06460	376	hypothetical protein; Provisional	99.79
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.78
PRK12414	384	putative aminotransferase; Provisional	99.78
PLN02187	462	rooty/superroot1	99.78
PRK07324	373	transaminase; Validated	99.78
PRK07681	399	aspartate aminotransferase; Provisional	99.78
PRK05942	394	aspartate aminotransferase; Provisional	99.78
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.78
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.78
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.78
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.78
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.78
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.78
PRK05967	395	cystathionine beta-lyase; Provisional	99.77
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.77
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.77
PRK09082	386	methionine aminotransferase; Validated	99.77
PRK07550	386	hypothetical protein; Provisional	99.77
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.77
PLN02242	418	methionine gamma-lyase	99.77
PTZ00433	412	tyrosine aminotransferase; Provisional	99.77
PTZ00377	481	alanine aminotransferase; Provisional	99.77
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.77
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.77
PLN02231	534	alanine transaminase	99.77
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.76
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.76
PRK07683	387	aminotransferase A; Validated	99.76
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.76
PRK04311	464	selenocysteine synthase; Provisional	99.76
PRK07582	366	cystathionine gamma-lyase; Validated	99.76
PRK07777	387	aminotransferase; Validated	99.75
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.75
PRK15029	755	arginine decarboxylase; Provisional	99.75
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.75
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.75
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.75
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.75
PRK06348	384	aspartate aminotransferase; Provisional	99.75
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.75
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.75
PRK06107	402	aspartate aminotransferase; Provisional	99.75
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.75
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.74
PRK07568	397	aspartate aminotransferase; Provisional	99.74
PRK09105	370	putative aminotransferase; Provisional	99.74
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.74
PRK08068	389	transaminase; Reviewed	99.74
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.74
PRK06290	410	aspartate aminotransferase; Provisional	99.74
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.74
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.73
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.73
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.73
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.73
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.73
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.72
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.72
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.72
PRK09265	404	aminotransferase AlaT; Validated	99.72
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.72
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.71
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.71
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.71
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.71
PRK08636	403	aspartate aminotransferase; Provisional	99.71
PRK06434	384	cystathionine gamma-lyase; Validated	99.71
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.71
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.71
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.71
PRK03321	352	putative aminotransferase; Provisional	99.71
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.71
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.7
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.7
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.7
PRK13578	720	ornithine decarboxylase; Provisional	99.7
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.7
PRK06855	433	aminotransferase; Validated	99.7
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.69
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.69
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.69
PRK09148	405	aminotransferase; Validated	99.69
PRK07049	427	methionine gamma-lyase; Validated	99.68
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.68
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.68
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.68
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.68
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.67
PRK08175	395	aminotransferase; Validated	99.67
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.67
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.66
PRK13392	410	5-aminolevulinate synthase; Provisional	99.66
PRK06836	394	aspartate aminotransferase; Provisional	99.66
PLN02822	481	serine palmitoyltransferase	99.66
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.66
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.66
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.66
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.65
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.65
PTZ00376	404	aspartate aminotransferase; Provisional	99.65
PRK07908	349	hypothetical protein; Provisional	99.64
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.64
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.64
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.64
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.64
PRK15400	714	lysine decarboxylase CadA; Provisional	99.64
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.63
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.63
PLN02483	489	serine palmitoyltransferase	99.63
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.62
PRK09064	407	5-aminolevulinate synthase; Validated	99.62
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.62
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.62
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.62
PRK05839	374	hypothetical protein; Provisional	99.62
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.61
PRK09275	527	aspartate aminotransferase; Provisional	99.61
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.61
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.6
PLN02452	365	phosphoserine transaminase	99.6
PLN02672	1082	methionine S-methyltransferase	99.6
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.6
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.59
PRK13237	460	tyrosine phenol-lyase; Provisional	99.59
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.59
PRK10534	333	L-threonine aldolase; Provisional	99.59
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.58
PRK13393	406	5-aminolevulinate synthase; Provisional	99.58
PRK08637	388	hypothetical protein; Provisional	99.57
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.57
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.57
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.56
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.56
PLN02397	423	aspartate transaminase	99.55
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.55
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.55
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.55
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.54
PRK08354	311	putative aminotransferase; Provisional	99.54
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.54
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.53
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.52
PRK07505	402	hypothetical protein; Provisional	99.5
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.5
PRK12462	364	phosphoserine aminotransferase; Provisional	99.49
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.49
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.48
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.46
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.44
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.43
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.43
PRK02627	396	acetylornithine aminotransferase; Provisional	99.43
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.42
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.41
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.4
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.39
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.39
PLN02955	476	8-amino-7-oxononanoate synthase	99.34
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.33
PLN02624	474	ornithine-delta-aminotransferase	99.33
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.32
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.32
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.3
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.26
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.25
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.24
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.24
PRK07482	461	hypothetical protein; Provisional	99.24
PRK12403	460	putative aminotransferase; Provisional	99.22
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.21
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.21
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.2
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.2
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.19
PRK05965	459	hypothetical protein; Provisional	99.19
PRK06541	460	hypothetical protein; Provisional	99.19
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.17
PRK04260	375	acetylornithine aminotransferase; Provisional	99.17
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.16
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.15
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.15
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.14
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.14
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.13
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.13
PRK06105	460	aminotransferase; Provisional	99.12
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.12
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.11
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.1
PLN00144	382	acetylornithine transaminase	99.1
PRK07678	451	aminotransferase; Validated	99.1
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.09
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.09
PRK07481	449	hypothetical protein; Provisional	99.09
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.09
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.08
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.08
PRK07036	466	hypothetical protein; Provisional	99.07
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.07
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.06
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.06
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.05
PRK06062	451	hypothetical protein; Provisional	99.04
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.04
PRK07483	443	hypothetical protein; Provisional	99.04
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.04
PRK07480	456	putative aminotransferase; Validated	99.03
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.03
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.03
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.02
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.02
PRK06917	447	hypothetical protein; Provisional	99.01
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.01
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.98
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	98.98
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	98.97
PRK08088	425	4-aminobutyrate aminotransferase; Validated	98.97
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	98.96
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.95
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.95
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.95
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	98.94
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	98.94
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	98.92
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	98.92
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	98.91
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	98.91
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.91
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	98.9
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.89
PRK07046	453	aminotransferase; Validated	98.89
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.86
PRK06149	972	hypothetical protein; Provisional	98.83
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.81
PRK06148	1013	hypothetical protein; Provisional	98.81
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.8
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	98.79
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.76
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.73
PRK08297	443	L-lysine aminotransferase; Provisional	98.69
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.67
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	98.66
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.64
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	98.6
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.56
COG4100	416	Cystathionine beta-lyase family protein involved i	98.52
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.46
KOG0630	838	consensus Predicted pyridoxal-dependent decarboxyl	98.37
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	98.25
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.22
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.98
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	97.37
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	97.33
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	97.27
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	96.87
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	96.48
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	96.32
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	92.4

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=100.00  E-value=8.4e-62  Score=468.26  Aligned_cols=370  Identities=43%  Similarity=0.711  Sum_probs=345.7

Q ss_pred             hhcChHHHHHHHHHHHhhcCcchhhHHHHHHHHhhhhhccccccc--cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCC
Q 013675           51 REKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSK--REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQ  127 (438)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~  127 (438)
                      .++|+++|..+.+|++++++|.++.+++++..+..+++...+...  .......||++|++ +++++.++++..-+..|.
T Consensus         2 ~~~~l~~r~~~~~f~~l~~~p~v~~~i~~~~~~~k~~~~~~~~~~~~~~~~~~~lP~~gl~~d~v~~~i~~~~~ld~~~~   81 (491)
T KOG1383|consen    2 HEEGLKKRLSGKVFKLLKKLPFVRVLIEKELNKVKDQLSTFMSRYDRQKMYFFTLPSKGLPKDAVLELINDELMLDGNPR   81 (491)
T ss_pred             CchhHHHHhHHHHHHHHhhChHHHHHHHHHHhhhhhhhhhhhhhhhhccceeecCCCCCCCHHHHHHHHHHHhccCCCcc
Confidence            367899999999999999999999999999999999998877654  34557899999999 999999999865444476


Q ss_pred             -CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHH
Q 013675          128 -GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTES  206 (438)
Q Consensus       128 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a  206 (438)
                       ++.+|.+|.++.+   +.+++.+.+..+   |+.+++.+|+.++++.++++|++.||+.+.+.     ||..|+|||||
T Consensus        82 ~~~vS~~v~~~~~~---~~~l~~~~~~k~---N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~-----~g~~t~G~Ses  150 (491)
T KOG1383|consen   82 LGLASGVVYWGEPE---LDKLIMEAYNKF---NPLHPDEFPVVRKLEAECVNMIANLFNAPSDS-----CGCGTVGGSES  150 (491)
T ss_pred             cCeeeEEEecCCcc---hhhHHHHHHhhc---CccCccccchhHHHHHHHHHHHHHHhcCCccc-----cCccccccchH
Confidence             9999999999877   888999988777   99999999999999999999999999999776     99999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCC
Q 013675          207 ILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFP  285 (438)
Q Consensus       207 ~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~  285 (438)
                      ++++++.++++....+|+++|+++++...|.+++|++++++++++.||+++ ++++|+.++.+.+++||++++++.|++|
T Consensus       151 ~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p  230 (491)
T KOG1383|consen  151 GLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFP  230 (491)
T ss_pred             HHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCC
Confidence            999999999988777899999999999999999999999999999999995 9999999999999999999999999999


Q ss_pred             CccccCHHHHHHHHHH-cCCeEEEeccccchhhhhhhhcCC-CCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccc
Q 013675          286 HGIIDPIQELGELALS-HGTCLHVDLCLGGFVLPFAKKLGY-PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE  363 (438)
Q Consensus       286 tG~iddi~~I~~la~~-~~i~lhVD~a~gg~~~pf~~~~g~-~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~  363 (438)
                      +|.+||+++|.++..+ +++++|||+|.|||+.|    +++ ..++|||+.+|+.|+++|+||||++|+|+|++++|+++
T Consensus       231 ~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p----~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~  306 (491)
T KOG1383|consen  231 TGEIEDVEKLADLLLEIWDIPIHVDACLGGFINP----AGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKE  306 (491)
T ss_pred             ccchhhHHHHHHHHHHHhCCceeecccCcccccc----ccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccc
Confidence            9999999999999999 99999999999999998    222 12379999999999999999999999999999999999


Q ss_pred             ccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       364 ~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++..+|++..+|.||.|.++++.|||+|+.++++|++|..+|.+||.+..+++.+.+++|++.|++++++++
T Consensus       307 ~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i  378 (491)
T KOG1383|consen  307 LLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKI  378 (491)
T ss_pred             cccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcccccee
Confidence            999999999999999999999999999999999999999999999999999999999999999999988875

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=6.8e-51  Score=411.85  Aligned_cols=327  Identities=34%  Similarity=0.489  Sum_probs=284.9

Q ss_pred             CCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCC---CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHH
Q 013675           97 EGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQ---GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARF  172 (438)
Q Consensus        97 ~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~  172 (438)
                      ......+|+.|.. ++++.++......+..+.   ++...+......    ....+.+.+..+++.|..+++.+|+..++
T Consensus        27 ~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~----~~~~a~~~~~~~~~~nl~d~~~~p~a~~~  102 (460)
T COG0076          27 LSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTR----VPPVAAELLVSALNKNLGDPDESPAAAEL  102 (460)
T ss_pred             hhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCC----CHHHHHHHHHHHHhhcCCCcccChhHHHH
Confidence            4456779999999 999999998844444443   454444333333    46788899999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc---CC---CCCeEEecCCCcCcHHHHHhhc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR---GI---TRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~---G~---~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      |++++.|+++++|++...     +|++|+|||+||++|++++|++.....   +.   ..|+||+|..+|+|+.|+++++
T Consensus       103 E~~~v~~l~~l~~~~~~~-----~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~l  177 (460)
T COG0076         103 EERVVNMLSDLLGAPEEA-----SGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL  177 (460)
T ss_pred             HHHHHHHHHHHhCCCCCC-----ceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHh
Confidence            999999999999998664     899999999999999999999876322   11   2578999999999999999999


Q ss_pred             CcEEEEeeCCC-CCccCHHHHHHhhccCcEE--EEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          247 NIKLWRVPVDK-EFRADVKAIKKYINRNTVL--IVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       247 Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~--vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      |++++.+|+++ ++++|+++++++|+++|..  |++++|++++|.+|||++|+++|++|++|+|||+|+||+++||.+..
T Consensus       178 G~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~  257 (460)
T COG0076         178 GLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD  257 (460)
T ss_pred             CCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence            99999999998 8999999999999999988  99999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccc-ccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE-IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~-~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                      +    .++++..+||||++|+||||++|+|||++++||++ +++...+..+.|+++.....++.|||++...+++|+.++
T Consensus       258 ~----~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~  333 (460)
T COG0076         258 G----RWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLR  333 (460)
T ss_pred             c----hhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHH
Confidence            5    47899999999999999999999999999999994 555555555556665666778899999999999999999


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      .+|.+||+++.+++++++++++++|++.+.+++.
T Consensus       334 ~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~  367 (460)
T COG0076         334 RLGREGYRKLLDRTLELARYLAEELEKLGDFELV  367 (460)
T ss_pred             HhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEee
Confidence            9999999999999999999999999998767653

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=8.8e-51  Score=404.36  Aligned_cols=328  Identities=28%  Similarity=0.409  Sum_probs=269.6

Q ss_pred             CCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHH
Q 013675           97 EGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFE  173 (438)
Q Consensus        97 ~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e  173 (438)
                      ...+.++|++|.+ +++++++++. .++...|+ |+++|+++.+..    +..++++++...+|+|...++.+|...++|
T Consensus         6 ~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~----~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E   81 (373)
T PF00282_consen    6 ARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPS----PASILADLLASALNQNGFTWEASPAATEIE   81 (373)
T ss_dssp             GGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--C----HHHHHHHHHHHHHT-BTTSTTTSHHHHHHH
T ss_pred             hcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCcc----HHHHHHHHHHhhhcccccccccccccccch
Confidence            3567789999999 9999999886 77888898 999999876655    588999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCC-CCccceeEcCChHHHHHHHHHHHHHHHHH---hcC---CCCCeEEecCCCcCcHHHHHhhc
Q 013675          174 AEVIAMTAALLGNKEKAS-GGQVCGNMTSGGTESILLAVKSSRDYMRN---KRG---ITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~-~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G---~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      .++++|+++++|+|.+.. .+..+|++|+|||+||+.|+.++|++...   ..|   ..++.|++++.+|+|+.|+|+++
T Consensus        82 ~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~l  161 (373)
T PF00282_consen   82 REVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARIL  161 (373)
T ss_dssp             HHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHT
T ss_pred             HHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhccee
Confidence            999999999999993210 00137899999999999999999987653   234   34678999999999999999999


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhcc---C---cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh--hh
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINR---N---TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV--LP  318 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~---~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~--~p  318 (438)
                      |+.++.||++++++||+++|+++|.+   +   +.+|+++.|++.+|.+||+++|+++|+++++|+|||+||||++  .|
T Consensus       162 Glg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~  241 (373)
T PF00282_consen  162 GLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSP  241 (373)
T ss_dssp             TSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHC
T ss_pred             eeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccc
Confidence            99999999999999999999999864   2   6699999999999999999999999999999999999999944  34


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC---------CccCCCCccCCC
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG---------GLYVSPTVAGSR  389 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g---------~~~~~~~~~gsr  389 (438)
                      +.+       ++.+...++||+++|+||||++|++||++++|++..+...+...++|.+         ..+.+.++.+||
T Consensus       242 ~~~-------~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR  314 (373)
T PF00282_consen  242 EYR-------HLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR  314 (373)
T ss_dssp             TTG-------GGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG
T ss_pred             ccc-------ccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccc
Confidence            322       3455666789999999999999999999999999877665545555544         224456888999


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                       +...+++|++|+.+|.+||++.+++..++++++++.|++.|++++.
T Consensus       315 -~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~  360 (373)
T PF00282_consen  315 -RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELV  360 (373)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred             -cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence             6667799999999999999999999999999999999999988764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02590 probable tyrosine decarboxylase

Probab=100.00  E-value=7.1e-49  Score=403.28  Aligned_cols=327  Identities=17%  Similarity=0.192  Sum_probs=269.7

Q ss_pred             CCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHH
Q 013675           97 EGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFE  173 (438)
Q Consensus        97 ~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e  173 (438)
                      ...+.++|++|.+ +++++++.+. .++...|+ |+++|++..+..    ...++.+++...++.+...++.+|+..++|
T Consensus        97 ~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f~a~~~~~~~----~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE  172 (539)
T PLN02590         97 DMLPDSAPERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTS----VAGFLGEMLNAGLSVVGFTWLTSPAATELE  172 (539)
T ss_pred             HhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCCCeeEeccCCCc----HHHHHHHHHHHhcccccCCcccCchhHHHH
Confidence            3456789999999 9999999886 78888897 999999765555    478889999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCC-CCccceeEcCChHHHHHHHHHHHHHHHHHhcC---CCCCeEEecCCCcCcHHHHHhhcCc-
Q 013675          174 AEVIAMTAALLGNKEKAS-GGQVCGNMTSGGTESILLAVKSSRDYMRNKRG---ITRPEMIIPVSAHSAYDKAAQYFNI-  248 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~-~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G---~~~~~Viv~~~~h~s~~~a~~~~Gi-  248 (438)
                      .++++|+++++|+|+... .+..+|++|+|||+|+++|+.++|++..+..|   ..+..|++++.+|+|+.|+++++|+ 
T Consensus       173 ~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg  252 (539)
T PLN02590        173 IIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIH  252 (539)
T ss_pred             HHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCC
Confidence            999999999999987400 00127899999999999999999997654333   2344678899999999999999999 


Q ss_pred             --EEEEeeCCC--CCccCHHHHHHhhccC------cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          249 --KLWRVPVDK--EFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       249 --~v~~v~~~~--~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                        +++.||+|+  +++||+++|+++|.++      |.+|+++++++.+|.+||+++|+++|++||+|+||||||||++++
T Consensus       253 ~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~  332 (539)
T PLN02590        253 EENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACI  332 (539)
T ss_pred             cccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhc
Confidence              699999984  6899999999999753      789999999999999999999999999999999999999999874


Q ss_pred             hhhhcCCCCCCC---ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC---------CccCCCCcc
Q 013675          319 FAKKLGYPIPPF---DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG---------GLYVSPTVA  386 (438)
Q Consensus       319 f~~~~g~~~p~~---~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g---------~~~~~~~~~  386 (438)
                              .|++   ......+||+++|+|||+++|++||++++|++......+...++|..         ..+...++.
T Consensus       333 --------~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~  404 (539)
T PLN02590        333 --------CPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQIS  404 (539)
T ss_pred             --------ChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCC
Confidence                    2223   23445579999999999999999999999987544332222222211         123344566


Q ss_pred             CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      .+|... ..++|++|+.+|.+||++.+++.+++|+++.+.|++.|+++++
T Consensus       405 lsRr~r-aLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~  453 (539)
T PLN02590        405 LSRRFR-SLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVV  453 (539)
T ss_pred             CCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence            566543 3599999999999999999999999999999999999988863

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=100.00  E-value=7.1e-47  Score=381.76  Aligned_cols=324  Identities=22%  Similarity=0.316  Sum_probs=271.6

Q ss_pred             CCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHH
Q 013675           98 GWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV  176 (438)
Q Consensus        98 ~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~  176 (438)
                      ....+||++|.+ +++++++.....-+...++++.|++.....+     + +.+++..+++.|..++..+|...++|+++
T Consensus        12 ~~~~~~p~~~~~~~~~~~~~~~~iyld~~a~~~~~~~~tt~~~p-----~-~~~~~~~~l~~~~~np~s~~~~~~le~~~   85 (431)
T TIGR01788        12 IPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNLATFVTTWMEP-----E-ARKLMDETINKNMIDKDEYPQTAEIENRC   85 (431)
T ss_pred             CCcccCCCCCCCHHHHHHHHHHHhhhcCCcceeeeeeeCCCCCH-----H-HHHHHHHHHhcCCCCcccCccHHHHHHHH
Confidence            345689999999 9999999987443444457888887544333     2 45666666777888888888888999999


Q ss_pred             HHHHHHHhCCC-C-CCCCCccceeEcCChHHHHHHHHHHHHHHHHH---hcC--CCCCeEEecCCCcCcHHHHHhhcCcE
Q 013675          177 IAMTAALLGNK-E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRG--ITRPEMIIPVSAHSAYDKAAQYFNIK  249 (438)
Q Consensus       177 ~~~~a~l~g~~-~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G--~~~~~Viv~~~~h~s~~~a~~~~Gi~  249 (438)
                      ++|+++++|++ + ++    ++|++|+||||||++|+.++++....   ..|  ..+.+|++++.+|+|+.++++.+|++
T Consensus        86 ~~~la~llg~~~~~~~----~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~  161 (431)
T TIGR01788        86 VNMLADLWHAPAKDAE----AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVE  161 (431)
T ss_pred             HHHHHHHhCCCCCCCC----CeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCce
Confidence            99999999998 3 34    57788999999999999998854322   112  23468999999999999999999999


Q ss_pred             EEEeeCCCC-CccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc------CCeEEEeccccchhhhhhhh
Q 013675          250 LWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH------GTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       250 v~~v~~~~~-~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~------~i~lhVD~a~gg~~~pf~~~  322 (438)
                      ++.||+|++ +.+|+++|+++|+++|.+|+++++||.+|.+||+++|+++|+++      |+|+|||+||||+.+||.. 
T Consensus       162 v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~-  240 (431)
T TIGR01788       162 LREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVY-  240 (431)
T ss_pred             eEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhC-
Confidence            999999985 69999999999999999999999999999999999999999999      9999999999999998752 


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                       +. . ++++...++||+++|+|||+++|+|+|++++|+++.....+...++|.++...+.++.++|++..+++.|+.|+
T Consensus       241 -~~-~-~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~  317 (431)
T TIGR01788       241 -PD-L-EWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFL  317 (431)
T ss_pred             -CC-c-hhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHH
Confidence             21 2 46777889999999999999999999999999875444444455667766555568889999876778999999


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+|.+||+++.++++++++++.+.|++.|++++
T Consensus       318 ~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el  350 (431)
T TIGR01788       318 RLGREGYRKIMQNSLDVARYLAEEIAKLGPFEI  350 (431)
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            999999999999999999999999999988875

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PLN02880 tyrosine decarboxylase

Probab=100.00  E-value=5.7e-46  Score=381.70  Aligned_cols=325  Identities=18%  Similarity=0.209  Sum_probs=265.2

Q ss_pred             CCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHH
Q 013675           98 GWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEA  174 (438)
Q Consensus        98 ~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~  174 (438)
                      .....+|++|.+ +++++++.+. .+....|+ |+++|++..+..    ...++++++...+|.+...++.+|...++|.
T Consensus        50 ~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~~~~~~----~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~  125 (490)
T PLN02880         50 LLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAYYPSNSS----VAGFLGEMLSAGLNIVGFSWITSPAATELEM  125 (490)
T ss_pred             hccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeccCCCc----HHHHHHHHHHHhhccCCcccccCcccHHHHH
Confidence            445678999999 9999999885 78888888 999999765555    4688888888888999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCC-CCccceeEcCChHHHHHHHHHHHHHHHHHhcCC---CCCeEEecCCCcCcHHHHHhhcCc--
Q 013675          175 EVIAMTAALLGNKEKAS-GGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI---TRPEMIIPVSAHSAYDKAAQYFNI--  248 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~-~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~---~~~~Viv~~~~h~s~~~a~~~~Gi--  248 (438)
                      ++.+|+++++|+++... .+...|++|+|||+||++|+.++|++..+..|.   .+..|++|+.+|+|+.|+++++|+  
T Consensus       126 ~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~  205 (490)
T PLN02880        126 IVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHP  205 (490)
T ss_pred             HHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCH
Confidence            99999999999986410 000168999999999999999999876544332   345678899999999999999999  


Q ss_pred             -EEEEeeCCC--CCccCHHHHHHhhccC------cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          249 -KLWRVPVDK--EFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       249 -~v~~v~~~~--~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                       .++.||+|+  +++||+++|+++|+++      |.+|+++++++.+|.+||+++|+++|++||+|+|||+||||++++ 
T Consensus       206 ~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~-  284 (490)
T PLN02880        206 ENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACI-  284 (490)
T ss_pred             HHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHh-
Confidence             489999985  6899999999999742      789999999999999999999999999999999999999998764 


Q ss_pred             hhhcCCCCCCCccCCC---CccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC---------CccCCCCc-c
Q 013675          320 AKKLGYPIPPFDFSVQ---GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG---------GLYVSPTV-A  386 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~---gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g---------~~~~~~~~-~  386 (438)
                             .|+++....   ++||+++|+|||+++|++||++++|++......+....+|..         ..+...++ .
T Consensus       285 -------~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~  357 (490)
T PLN02880        285 -------CPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPL  357 (490)
T ss_pred             -------CHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCC
Confidence                   234443333   469999999999999999999999976543332222222211         01222234 4


Q ss_pred             CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      |+|..++  ++|++++.+|.+|+++.+++.+++++++.+.|++.|++++.
T Consensus       358 ~rr~~al--klw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~  405 (490)
T PLN02880        358 GRRFRSL--KLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVV  405 (490)
T ss_pred             CCcccHH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            6666665  99999999999999999999999999999999999888753

>PLN02263 serine decarboxylase

Probab=100.00  E-value=5.4e-45  Score=365.77  Aligned_cols=295  Identities=20%  Similarity=0.231  Sum_probs=238.2

Q ss_pred             HHHHHHHHHH-hCCCCCCCCCceeeeecCCCCcchH-HHHHHHHHHHhhccCCCCccc-ch---hHHHHHHHHHHHHHHH
Q 013675          110 VGVIEKLKEE-KGKDVVWQGKCSGTVYIGGSEAEGH-FSLINEACSMFAHTNPLHLDI-FQ---SVARFEAEVIAMTAAL  183 (438)
Q Consensus       110 ~~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~-~~---~~~~~e~~~~~~~a~l  183 (438)
                      +++++.+.+. ..+..    ++.|+  +....   . ...+.+.+. +...|..++-. ++   +.+++|.++.+|++++
T Consensus        76 ~~~l~~~~~~~~~~~~----~~~gY--p~n~~---~d~s~l~~~l~-~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L  145 (470)
T PLN02263         76 ASVLARYRKTLVERTK----HHLGY--PYNLD---FDYGALGQLQH-FSINNLGDPFIESNYGVHSRQFEVGVLDWFARL  145 (470)
T ss_pred             HHHHHHHHHHHHhccc----ceeCC--CCccc---CChhhHHHHHH-hhccCCCCccccCCcchhHHHHHHHHHHHHHHH
Confidence            5566666665 33332    24444  22222   2 345666554 44555555544 44   6999999999999999


Q ss_pred             hCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCH
Q 013675          184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADV  263 (438)
Q Consensus       184 ~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~  263 (438)
                      +|.++++    .+|++|+||||||++|+.++|++..      +..+++|+.+|+|+.|+++++|++++.||++++++||+
T Consensus       146 ~g~p~~~----~~G~vtsGGTEaNL~Al~aARe~~~------~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~  215 (470)
T PLN02263        146 WEIEKNE----YWGYITNCGTEGNLHGILVGREVFP------DGILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDC  215 (470)
T ss_pred             hCCCCCC----CeEEEeCcHHHHHHHHHHHHHhhcC------CcEEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcH
Confidence            9998743    3899999999999999999998532      14789999999999999999999999999999999999


Q ss_pred             HHHHHhhccC---cEEEEEecCCCCCccccCHHHHHHHHHHcCC-----eEEEeccccchhhhhhhhcCCCCCCCccCCC
Q 013675          264 KAIKKYINRN---TVLIVGSAPGFPHGIIDPIQELGELALSHGT-----CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ  335 (438)
Q Consensus       264 ~~Le~~I~~~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~i-----~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~  335 (438)
                      ++|+++|.++   +.+|+++.|++++|.+||+++|+++|+++|+     |+||||||||+++||++.    .|++++...
T Consensus       216 ~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~----~~~~df~~~  291 (470)
T PLN02263        216 ADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR----APKVTFKKP  291 (470)
T ss_pred             HHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc----ccccCCCcC
Confidence            9999999765   6889999999999999999999999999997     999999999999999864    346888765


Q ss_pred             CccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHH
Q 013675          336 GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKA  415 (438)
Q Consensus       336 gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~  415 (438)
                       +||+++|+||||++|++||++++|++...  .+....+|...  ...++.|||++...+++|++|+.+|.+||++.+++
T Consensus       292 -vDSIsvD~HK~l~~P~~cgvll~R~~~~~--~~~~~~~Yl~~--~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~  366 (470)
T PLN02263        292 -IGSVSVSGHKFVGCPMPCGVQITRMEHIN--VLSSNVEYLAS--RDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQK  366 (470)
T ss_pred             -ccEEEECCccccCCCcCEEEEEEehhhHh--hhccChHhhCC--CCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHH
Confidence             99999999999999999999999975431  11222233322  23578999999877899999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCcc
Q 013675          416 IMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       416 ~~~~a~~l~~~L~~~~g~~  434 (438)
                      +.++|+++.+.|+++ +++
T Consensus       367 ~~~~A~~l~~~l~~~-g~~  384 (470)
T PLN02263        367 CLRNAHYLKDRLREA-GIS  384 (470)
T ss_pred             HHHHHHHHHHHHHhC-CCe
Confidence            999999999999987 443

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=100.00  E-value=9.9e-44  Score=365.81  Aligned_cols=322  Identities=22%  Similarity=0.302  Sum_probs=258.8

Q ss_pred             CCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHH
Q 013675          100 WTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV  176 (438)
Q Consensus       100 ~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~  176 (438)
                      ..++|++|.+ +++++++.+. .++...|. |++.|++..+...   ....+.+ +...+|.|...++.+|...++|.++
T Consensus        59 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~~~~~p~---~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v  134 (522)
T TIGR03799        59 SAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMTSALPY---FMLPLSK-LMVALNQNLVKIETSKAFTPLERQV  134 (522)
T ss_pred             ccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCeEEeccCCCch---HHHHHHH-HHHHhcCCcceeecCcchHHHHHHH
Confidence            5679999999 9999887664 78888888 9999998765222   2222445 5557899999999999999999999


Q ss_pred             HHHHHHHhCCCCCC-------CCCccceeEcCChHHHHHHHHHHHHHHHHHh---------c---------CCCCCeEEe
Q 013675          177 IAMTAALLGNKEKA-------SGGQVCGNMTSGGTESILLAVKSSRDYMRNK---------R---------GITRPEMII  231 (438)
Q Consensus       177 ~~~~a~l~g~~~~~-------~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~---------~---------G~~~~~Viv  231 (438)
                      .+|++++++..++.       ..+..+|++|+|||+||++|+.++|++....         .         |.+++.|++
T Consensus       135 ~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~  214 (522)
T TIGR03799       135 LGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILV  214 (522)
T ss_pred             HHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEE
Confidence            99999998632110       0001378999999999999999999875321         1         223568999


Q ss_pred             cCCCcCcHHHHHhhcCc---EEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHc
Q 013675          232 PVSAHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSH  302 (438)
Q Consensus       232 ~~~~h~s~~~a~~~~Gi---~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~  302 (438)
                      ++.+|+|+.|+++.+|+   +++.||+|++++||+++|+++|++      .+.+|+.+++++.+|.+||+++|+++|+++
T Consensus       215 S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~  294 (522)
T TIGR03799       215 SERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQEL  294 (522)
T ss_pred             CCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHc
Confidence            99999999999999998   899999999999999999999963      357788889999999999999999999999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccC---CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC---
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS---VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS---  376 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~---~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~---  376 (438)
                      |+|+|||+||||+.++        .++++..   ..++||+++|+|||+++|+|+|++++|++...+ .+.....|.   
T Consensus       295 g~~lHVDaA~gg~~~~--------~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~-~~~~~~~Yl~~~  365 (522)
T TIGR03799       295 GCHFHVDAAWGGATLL--------SNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMS-AIEHHAEYILRK  365 (522)
T ss_pred             CCeEEEEchhhhHHHh--------CHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHH-HhccCcchhcCC
Confidence            9999999999988764        1122222   236799999999999999999999999876543 222222331   


Q ss_pred             -CCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          377 -GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       377 -g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                       +..+...+++|+|++.. .++|++++.+|.+|+++++++..++++++.+.|++.|++++
T Consensus       366 ~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el  424 (522)
T TIGR03799       366 GSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFEL  424 (522)
T ss_pred             CCCccccceeecCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence             22344567889998775 47999999999999999999999999999999999999876

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=100.00  E-value=8.9e-43  Score=361.37  Aligned_cols=319  Identities=23%  Similarity=0.365  Sum_probs=258.3

Q ss_pred             CCCCCCCCc-HHHHHHHHHH-hCCCCCCC-C-CceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHH
Q 013675          101 TELPRAGLG-VGVIEKLKEE-KGKDVVWQ-G-KCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV  176 (438)
Q Consensus       101 ~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~  176 (438)
                      ..+++...+ +++++++.+. .+....|+ + ++.|++..+..    .++++++++....|+|...++.+|...++|.++
T Consensus        53 ~~~~~~~~~~~~~l~~l~~~l~~~sv~~~~P~ry~ghm~~~~~----~paila~~~a~~~N~n~~~~e~SP~~t~lE~~v  128 (608)
T TIGR03811        53 KSFTKTVNNMKDVLDELSSRLRTESVPWHSAGRYWGHMNSETL----MPAILAYNYAMLWNGNNVAYESSPATSQMEEEV  128 (608)
T ss_pred             cccccCccCHHHHHHHHHHHHhcCCCCCCCccceEEECcCCCC----HHHHHHHHHHHHhCCCCCccccCchHHHHHHHH
Confidence            356666667 9999999886 56777877 6 99999977666    578889999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH-----Hh------------------------------
Q 013675          177 IAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR-----NK------------------------------  221 (438)
Q Consensus       177 ~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~-----~~------------------------------  221 (438)
                      .+|+|+++|++..      +|++|+|||+||+.|+.++|+...     +.                              
T Consensus       129 i~~la~l~G~~~~------~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~  202 (608)
T TIGR03811       129 GKEFATLMGYKNG------WGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAG  202 (608)
T ss_pred             HHHHHHHhCCCCC------CeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccc
Confidence            9999999999864      789999999999999999998531     00                              


Q ss_pred             ------------cC--CCCC-eEEecCCCcCcHHHHHhhcCc---EEEEeeCCCCCccCHHHHHHhhccC------cEEE
Q 013675          222 ------------RG--ITRP-EMIIPVSAHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINRN------TVLI  277 (438)
Q Consensus       222 ------------~G--~~~~-~Viv~~~~h~s~~~a~~~~Gi---~v~~v~~~~~~~~d~~~Le~~I~~~------t~~v  277 (438)
                                  .|  ..+. ++++|..+|+|+.|++.++|+   +++.||+|++++||+++|+++|++.      +.+|
T Consensus       203 ~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~V  282 (608)
T TIGR03811       203 DQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGV  282 (608)
T ss_pred             cchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEE
Confidence                        00  0111 689999999999999999999   6999999999999999999999742      6789


Q ss_pred             EEecCCCCCccccCHHHHHHHH---HHcCC--eEEEeccccchhhh-hhhhcCCCCCCCc----------c---------
Q 013675          278 VGSAPGFPHGIIDPIQELGELA---LSHGT--CLHVDLCLGGFVLP-FAKKLGYPIPPFD----------F---------  332 (438)
Q Consensus       278 v~~~~~~~tG~iddi~~I~~la---~~~~i--~lhVD~a~gg~~~p-f~~~~g~~~p~~~----------~---------  332 (438)
                      |++.|+|.+|.+||+++|+++|   +++|+  |+||||||||+..+ |++..+..+|..+          |         
T Consensus       283 VataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~  362 (608)
T TIGR03811       283 VGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISR  362 (608)
T ss_pred             EEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccH
Confidence            9999999999999999999999   67898  69999999998632 3322111111000          0         


Q ss_pred             -------CCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC---C----CccCCCCccCCCCCchHHHHH
Q 013675          333 -------SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS---G----GLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       333 -------~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~---g----~~~~~~~~~gsr~~~~ia~~~  398 (438)
                             ...++||+++|+||||+.|++||++++|++.++... .....|.   +    ......++.|||+|+..+++|
T Consensus       363 ~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~-~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW  441 (608)
T TIGR03811       363 EVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVI-SYFATYVFEKGADIPALLGAYILEGSKAGATAASVW  441 (608)
T ss_pred             hHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHH-hcCcchhccccccCcccccccceecCCccHHHHHHH
Confidence                   245689999999999999999999999998754321 1112221   1    123445789999998788999


Q ss_pred             HHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          399 AALMSL--GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       399 aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++++.+  |.+||.+++++++++++++.+.|++.
T Consensus       442 ~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       442 AAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998  99999999999999999999999884

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PLN03032 serine decarboxylase; Provisional

Probab=100.00  E-value=6.3e-43  Score=346.20  Aligned_cols=263  Identities=20%  Similarity=0.263  Sum_probs=222.0

Q ss_pred             HHHhhccCCCCcccc----hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675          152 CSMFAHTNPLHLDIF----QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP  227 (438)
Q Consensus       152 ~~~~~~~n~~~~~~~----~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~  227 (438)
                      +..+...|..+|..+    ...+++|+++++|+++++|+++++    ++|+||+||||||++|+.++|+..   ++   +
T Consensus        43 ~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~----~~G~fTsGGTEaNl~al~~ar~~~---~~---~  112 (374)
T PLN03032         43 LMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDE----YWGYITTCGTEGNLHGILVGREVF---PD---G  112 (374)
T ss_pred             HHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCcc----CCEEEeCchHHHHHHHHHHHHHhC---CC---c
Confidence            334444444444333    368999999999999999998776    579999999999999999988642   22   5


Q ss_pred             eEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcC-
Q 013675          228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHG-  303 (438)
Q Consensus       228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~-  303 (438)
                      .|+++..+|+|+.|+++++|++++.||++++|++|+++|+++|++   +|.+|+++++||++|.+||+++|+++|+++| 
T Consensus       113 ~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~  192 (374)
T PLN03032        113 ILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGY  192 (374)
T ss_pred             EEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCC
Confidence            899999999999999999999999999999999999999999987   4889999999999999999999999999996 


Q ss_pred             ----CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc
Q 013675          304 ----TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL  379 (438)
Q Consensus       304 ----i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~  379 (438)
                          +|+|||+|+|++.+||...    .|++++.. ++||+++|+||++++|+|+|++++|++.+..  +....+|... 
T Consensus       193 ~~~~~~lHvDaA~gg~~~p~~~~----~~~~~~~~-~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~--~~~~~~Yl~~-  264 (374)
T PLN03032        193 TEDRFYIHCDGALFGLMMPFVSR----APEVTFRK-PIGSVSVSGHKFLGCPMPCGVALTRKKHVKA--LSQNVEYLNS-  264 (374)
T ss_pred             CCCCeeEEEEccchhhhhhccCC----CcccCCCc-CCcEEEECcccccCCCcCeEEEEEEchhhHh--hccCCcccCC-
Confidence                5999999999999998653    34677764 7999999999998889999999999754321  2222333322 


Q ss_pred             cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       380 ~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                       ...++.|||++...+++|++|+.+|.+||++.++++.++++++.+.|++. +++
T Consensus       265 -~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~  317 (374)
T PLN03032        265 -RDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLT  317 (374)
T ss_pred             -CCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence             24688999999888899999999999999999999999999999999886 554

>PRK02769 histidine decarboxylase; Provisional

Probab=100.00  E-value=4e-42  Score=342.77  Aligned_cols=258  Identities=24%  Similarity=0.343  Sum_probs=221.8

Q ss_pred             cCCCCcccch----hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Q 013675          158 TNPLHLDIFQ----SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV  233 (438)
Q Consensus       158 ~n~~~~~~~~----~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~  233 (438)
                      .|...|..++    ..+++|+++++|+++++|+++.+    ++|++|+||||||+.++.++|++.   ++   ++|++++
T Consensus        48 ~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~----~~G~~TsGgTean~~a~~~ar~~~---~~---~~ii~s~  117 (380)
T PRK02769         48 NNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNE----SWGYITNGGTEGNLYGCYLARELF---PD---GTLYYSK  117 (380)
T ss_pred             ccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCC----CCEEEecChHHHHHHHHHHHHHhC---CC---cEEEeCC
Confidence            3444444444    47899999999999999998665    579999999999999999988642   34   7999999


Q ss_pred             CCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccC---cEEEEEecCCCCCccccCHHHHHHHHHHcC---CeEE
Q 013675          234 SAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDPIQELGELALSHG---TCLH  307 (438)
Q Consensus       234 ~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~---i~lh  307 (438)
                      .+|+|+.++++++|++.+.||+++++++|+++|+++|+++   |++|++++++|++|.+||+++|+++|++||   +|+|
T Consensus       118 ~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lH  197 (380)
T PRK02769        118 DTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIH  197 (380)
T ss_pred             CceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEE
Confidence            9999999999999999999999989999999999999887   999999999999999999999999999998   6999


Q ss_pred             EeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccC
Q 013675          308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG  387 (438)
Q Consensus       308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g  387 (438)
                      ||+|+|++.+||++.    .+++++.. ++||+++|+|||+++|+|+|++++|++.+...  ....+|...  ...++.|
T Consensus       198 VDaA~gg~~~p~~~~----~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~--~~~~~yl~~--~d~t~~G  268 (380)
T PRK02769        198 ADAALSGMILPFVNN----PPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERI--SVDVDYIGS--RDQTISG  268 (380)
T ss_pred             EEecccceeecccCc----cccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhc--ccCccccCC--CCCCccC
Confidence            999999999998753    33688877 99999999999998999999999997644322  122333322  2457899


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ||++..++++|++|+.+|.+|++++.+++.++++++.++|++. |+++
T Consensus       269 SR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~  315 (380)
T PRK02769        269 SRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPA  315 (380)
T ss_pred             CCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEE
Confidence            9999888999999999999999999999999999999999875 5543

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-37  Score=295.31  Aligned_cols=332  Identities=18%  Similarity=0.210  Sum_probs=263.4

Q ss_pred             HhhhhhccccccccCCCCCCCCCCCCc-HHHHHHHHHHhC-CCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCC
Q 013675           83 KVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEEKG-KDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNP  160 (438)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~  160 (438)
                      |+++.+.+.-.  .+...+++|+++.| ++++...++... ....-+|++....+.+ -+   +..+..+++.+..|+|.
T Consensus        57 kv~~fhhP~~L--~~l~nlel~~~~esl~qil~~cr~tl~y~vKTgHprffNQl~~g-lD---~~~Lag~wlT~t~Ntn~  130 (510)
T KOG0629|consen   57 KVLDFHHPDEL--KELFNLELRDQPESLAQILEDCRDTLKYSVKTGHPRFFNQLSSG-LD---PIGLAGEWLTSTANTNM  130 (510)
T ss_pred             eeecccChHHH--HHHhCcccCCChhhHHHHHHHHHHHHHhhhccCCCcchhhhccC-CC---HHHHHHHHHHhccCCCC
Confidence            55555555433  34778899999999 999999998633 4444456665554443 33   57889999999999999


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH---hcCC---CCCeEEecCC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRGI---TRPEMIIPVS  234 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G~---~~~~Viv~~~  234 (438)
                      +.|+..|.+.-||.++...+.++.|++...     .|++++||+-||+.++.++|.....   ..|.   +.-.+++|+.
T Consensus       131 ~TYEiAPvF~lmE~~vl~km~~ivGw~~~~-----DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSee  205 (510)
T KOG0629|consen  131 FTYEIAPVFVLMEEEVLAKMREIVGWEEGG-----DGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEE  205 (510)
T ss_pred             ceEEecceEEeehHHHHHHHHHHhCCCCCC-----CceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEeccc
Confidence            999999999999999999999999999864     6799999999999999999975432   2332   2234578999


Q ss_pred             CcCcHHHHHhhcCc---EEEEeeCCCCCccCHHHHHHhhcc---C---cEEEEEecCCCCCccccCHHHHHHHHHHcCCe
Q 013675          235 AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINR---N---TVLIVGSAPGFPHGIIDPIQELGELALSHGTC  305 (438)
Q Consensus       235 ~h~s~~~a~~~~Gi---~v~~v~~~~~~~~d~~~Le~~I~~---~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~  305 (438)
                      +|+|+.|++..+|+   .++.|++++.|+|++++||+.|-+   +   |.+|.+++++|..|++||++.|+++|++|++|
T Consensus       206 sHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lW  285 (510)
T KOG0629|consen  206 SHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLW  285 (510)
T ss_pred             chhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEE
Confidence            99999999999995   899999999999999999999953   3   79999999999999999999999999999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCC---ccEEEeCCCCCCCCCCCcEEEEEecccccccc------hhcccccC
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG---VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQ------FVAVTEWS  376 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g---vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~------~~~~~~~~  376 (438)
                      +|||+||||+++.        .+..+....|   ++|+++++||+..+|..||.+++|.+.++...      |.+.++-.
T Consensus       286 mHvDAAwGGglLm--------S~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~  357 (510)
T KOG0629|consen  286 MHVDAAWGGGLLM--------SRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKF  357 (510)
T ss_pred             EEeeccccccccc--------ChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCce
Confidence            9999999997652        1123334444   59999999999999999999999988755432      22222211


Q ss_pred             CCc---cCCC-CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          377 GGL---YVSP-TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       377 g~~---~~~~-~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      -..   -+.. ..+|++..  +..+|..++.-|.+|+++.++++.++|+|+.+.|++-++.+.
T Consensus       358 YdvS~DTgdK~iQCGRh~D--~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~  418 (510)
T KOG0629|consen  358 YDVSYDTGDKAIQCGRHVD--VFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEM  418 (510)
T ss_pred             eecccccccchhhcCcccc--HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccccee
Confidence            000   1111 23455555  449999999999999999999999999999999999877654

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-34  Score=279.24  Aligned_cols=349  Identities=19%  Similarity=0.262  Sum_probs=281.3

Q ss_pred             chhhHHHHH-HHHhhhhhccccccccCCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHH
Q 013675           72 GVNKYIEAE-KQKVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSL  147 (438)
Q Consensus        72 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~  147 (438)
                      ++.++.+.. .++++.++.+...  +...+.+.|+++.+ ++|++++++. +++.+.|+ |++..+ |++++.   ...+
T Consensus        16 ~IadY~e~ir~r~v~P~v~PGYl--~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAy-fpa~~s---~~si   89 (511)
T KOG0628|consen   16 YIADYLENIRKRRVLPDVKPGYL--RDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAY-FPAGNS---YPSI   89 (511)
T ss_pred             HHHHHHHhhhccCCCCCCCcchh--hhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeE-ccCccc---hHHH
Confidence            344444332 2445555555444  56778899999999 9999999998 89999999 777655 566665   6889


Q ss_pred             HHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCC---CCCccceeEcCChHHHHHHHHHHHHHHHHHh--c
Q 013675          148 INEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKA---SGGQVCGNMTSGGTESILLAVKSSRDYMRNK--R  222 (438)
Q Consensus       148 ~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~---~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~--~  222 (438)
                      +++.+...++.-.+.+..+|..+++|.-+.+|++++++.|...   ..|+-+|++-+++|++++.++.++|...-.+  .
T Consensus        90 ladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~  169 (511)
T KOG0628|consen   90 LADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKS  169 (511)
T ss_pred             HHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhc
Confidence            9999888888888889999999999999999999999997422   1234588999999999999999999765432  1


Q ss_pred             C---CC------CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccC------cEEEEEecCCCCCc
Q 013675          223 G---IT------RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHG  287 (438)
Q Consensus       223 G---~~------~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG  287 (438)
                      +   .+      +-.++.++.+|.|+.|+|...|++++.++.|+++.|+.+.|+++|.++      |.+++++.+++.+.
T Consensus       170 ~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~c  249 (511)
T KOG0628|consen  170 RPPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSC  249 (511)
T ss_pred             CCCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCcccc
Confidence            1   11      224689999999999999999999999999999999999999999875      78999999999999


Q ss_pred             cccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc---cEEEeCCCCCCCCCCCcEEEEEecccc
Q 013675          288 IIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV---TSISVDVHKYGLAPKGTSVVLYRNREI  364 (438)
Q Consensus       288 ~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv---dsis~s~hK~~~~p~g~g~l~~r~~~~  364 (438)
                      .+|++++|..+|+++|+|+|||+||+|.+.-        +|+++....|+   ||+.+++|||+..-..|+.++++|...
T Consensus       250 a~D~l~elg~Vc~~~glWLHVDAAYAGsa~i--------CpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~  321 (511)
T KOG0628|consen  250 AFDELEELGPVCREEGLWLHVDAAYAGSAFI--------CPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTK  321 (511)
T ss_pred             ccccHHHhcchhhhcCEEEEeehhhcccccc--------CHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCce
Confidence            9999999999999999999999999886542        56777666665   999999999999999999999998854


Q ss_pred             cccchhcccc-----cCCC--ccCCCCcc-CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          365 RKHQFVAVTE-----WSGG--LYVSPTVA-GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       365 ~~~~~~~~~~-----~~g~--~~~~~~~~-gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      ....+...+-     +.+.  +|...+++ |+|..++  .+|..++.+|.+++++.+++..++++.+.+.+.+.+.+++.
T Consensus       322 ~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSL--KlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~  399 (511)
T KOG0628|consen  322 LSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSL--KLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIV  399 (511)
T ss_pred             eeeeeecChHhhcchhhccCCCccccccccccchhhH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceee
Confidence            4433322222     2221  23333333 6778887  99999999999999999999999999999999988877753

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=100.00  E-value=3.1e-33  Score=280.10  Aligned_cols=303  Identities=35%  Similarity=0.561  Sum_probs=239.8

Q ss_pred             Cc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCC
Q 013675          108 LG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN  186 (438)
Q Consensus       108 ~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~  186 (438)
                      .+ +|+++.++++...+...+ +++|..+....+     .+ .+++..+...+...+...++..++++++++++++++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~   74 (371)
T PRK13520          2 LSEEEILEELEEYRSEDLKYE-RILSSMCTEPHP-----IA-RKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHL   74 (371)
T ss_pred             CCHHHHHHHHHHHHhcCCCHH-HeeeeeecCchH-----HH-HHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCC
Confidence            46 899999999977776666 467776554433     22 24444444444444444577888889999999999999


Q ss_pred             CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHH
Q 013675          187 KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAI  266 (438)
Q Consensus       187 ~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~L  266 (438)
                      ++..      +++++|||+++..++++++.... ++|   ++|+++...|+++.++++.+|++++.+|.++++.+|+++|
T Consensus        75 ~~~~------~~~~~ggt~a~~~a~~~~~~~~~-~~~---~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l  144 (371)
T PRK13520         75 PDAY------GYITSGGTEANIQAVRAARNLAK-AEK---PNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAV  144 (371)
T ss_pred             CCCC------eEEecCcHHHHHHHHHHHHhhcc-CCC---ceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHH
Confidence            7653      38999999999999998875311 123   7899999999999999999999999999988889999999


Q ss_pred             HHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCC
Q 013675          267 KKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHK  346 (438)
Q Consensus       267 e~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK  346 (438)
                      +++|++++++|++++++|++|.++|+++|.++|+++|+++|||++|+++..|+...    .+.+++...++|++++++||
T Consensus       145 ~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~----~~~~~~~~~~vd~~~~s~~K  220 (371)
T PRK13520        145 EDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDD----PPNFDFSLPGVDSITIDPHK  220 (371)
T ss_pred             HHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcC----CCCccccCCCCceEEECCcc
Confidence            99999999888899999999999999999999999999999999999988775321    12356667789999999999


Q ss_pred             CCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHH
Q 013675          347 YGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKG  426 (438)
Q Consensus       347 ~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~  426 (438)
                      |+++|.++|++++++++..+... ....|..+. ......|++++..+++++++++.++.+|+++..++..++++++.+.
T Consensus       221 ~~~a~~~~G~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~  298 (371)
T PRK13520        221 MGLAPIPAGGILFRDESYLDALA-VDTPYLTSK-KQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEE  298 (371)
T ss_pred             ccCccCCceEEEEcCHHHHHhhc-ccCccccCC-CCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHH
Confidence            99889999998888765443221 111221111 1223457888888899999999999999999999999999999999


Q ss_pred             hhcCCCcc
Q 013675          427 LVLFPMFL  434 (438)
Q Consensus       427 L~~~~g~~  434 (438)
                      |+++ |++
T Consensus       299 L~~~-g~~  305 (371)
T PRK13520        299 LKER-GFE  305 (371)
T ss_pred             HHhC-CCE
Confidence            9987 665

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=100.00  E-value=1.6e-31  Score=267.99  Aligned_cols=304  Identities=35%  Similarity=0.563  Sum_probs=234.5

Q ss_pred             HHHHHHHHHHhCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCC
Q 013675          110 VGVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKE  188 (438)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~  188 (438)
                      +++++.+.++..+..+.+ ++........+.+     . ..+++..+...+...+...++..++++++++++++++|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~   76 (373)
T TIGR03812         3 EEVLEELKEYRSEDLKYSDGRILGSMCTNPHP-----I-AVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPD   76 (373)
T ss_pred             HHHHHHHHHHHhcCCCCCCCcEEEEEeCCchH-----H-HHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC
Confidence            788999999877777776 6766555443332     2 12233333333333333456778889999999999999987


Q ss_pred             CCCCCccceeEcCChHHHHHHHHHHHHHHHHH-hcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHH
Q 013675          189 KASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIK  267 (438)
Q Consensus       189 ~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~-~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le  267 (438)
                      .+    +  ++++|+|+++..++.+++..... .+|   ++|+++.++|+++.++++.+|++++.+|+++++.+|+++++
T Consensus        77 ~~----~--~~~~g~~~~~~~~~~~~~~~~~~~~~g---~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~  147 (373)
T TIGR03812        77 AY----G--YIVSGGTEANIQAVRAAKNLAREEKRT---PNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVE  147 (373)
T ss_pred             CC----e--EEeccHHHHHHHHHHHHHHHHhccCCC---cEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHH
Confidence            64    3  78999999999998887643221 234   79999999999999999999999999999888999999999


Q ss_pred             HhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC
Q 013675          268 KYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY  347 (438)
Q Consensus       268 ~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~  347 (438)
                      +++++++..++..+++|++|.++|+++|.++|+++|+++|||++|+++..|+... |...+++++...++|++++++|||
T Consensus       148 ~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~-~~~~~~~d~~~~~~d~~~~s~~K~  226 (373)
T TIGR03812       148 DLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKK-GYNPPPFDFSLPGVQSITIDPHKM  226 (373)
T ss_pred             HHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhc-CCCCCCccccCCCCCEEEECcccc
Confidence            9999888666666689999999999999999999999999999999888775432 211235677777999999999999


Q ss_pred             CCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh
Q 013675          348 GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL  427 (438)
Q Consensus       348 ~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L  427 (438)
                      +++|.++|++++++++..+... ....|.... ......|+|+...+++++++++.++++|+++..++..++++++++.|
T Consensus       227 ~~~~~~~G~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L  304 (373)
T TIGR03812       227 GLSPIPAGGILFRSKSYLKYLS-VDAPYLTVK-KQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEEL  304 (373)
T ss_pred             CCCcCCceEEEEeCHHHHhhhc-ccCcccCCC-CCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888877766543221 112222111 12234578888888999999999999999999999999999999999


Q ss_pred             hcCC
Q 013675          428 VLFP  431 (438)
Q Consensus       428 ~~~~  431 (438)
                      ++++
T Consensus       305 ~~~g  308 (373)
T TIGR03812       305 KKIG  308 (373)
T ss_pred             HhCC
Confidence            9874

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=100.00  E-value=1.2e-32  Score=273.02  Aligned_cols=248  Identities=36%  Similarity=0.535  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh-
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK-  221 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~-  221 (438)
                      ..+++.+.+....+.|...+..+++..++|+++++|+++++|.+ ...     .+++|+|||+|+.+++++++.+...+ 
T Consensus        11 ~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~-----~~~~t~ggt~a~~~al~~~~~~~~~~~   85 (345)
T cd06450          11 PPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDA-----DGVFTSGGSESNLLALLAARDRARKRL   85 (345)
T ss_pred             HHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCC-----CEEEeCChhHHHHHHHHHHHHHhhhhh
Confidence            35777888888788887778899999999999999999999997 333     45999999999999999998643210 


Q ss_pred             ------cCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccc
Q 013675          222 ------RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGII  289 (438)
Q Consensus       222 ------~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~i  289 (438)
                            +| ++++|+++.++|+++.++++.+|++++.+|+++++.+|+++|++++++      +++++++++++|++|.+
T Consensus        86 ~~~~~~~~-~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~  164 (345)
T cd06450          86 KAGGGRGI-DKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAI  164 (345)
T ss_pred             hccccccc-CCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCC
Confidence                  11 125889999999999999999999999999998889999999999987      88999999999999999


Q ss_pred             cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch
Q 013675          290 DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF  369 (438)
Q Consensus       290 ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~  369 (438)
                      +|+++|+++|+++|+|+|+|++|+++..|+....     .......++|++++++|||+++|.|+|+++++         
T Consensus       165 ~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~-----~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~---------  230 (345)
T cd06450         165 DPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPR-----HLDFGIERVDSISVDPHKYGLVPLGCSAVLVR---------  230 (345)
T ss_pred             CCHHHHHHHHHHhCCeEEEechhhHHHhhChhhH-----HHhcCccccCEEEEchhHhhCCCcchHHHHHH---------
Confidence            9999999999999999999999998877532110     11233457999999999999999999987655         


Q ss_pred             hcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       370 ~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                                              ++++|++++.++.+|++++.++..++++++.+.|++++++++
T Consensus       231 ------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~  272 (345)
T cd06450         231 ------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFEL  272 (345)
T ss_pred             ------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence                                    458999999999999999999999999999999999988764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=8.3e-32  Score=260.99  Aligned_cols=246  Identities=28%  Similarity=0.399  Sum_probs=202.6

Q ss_pred             cCCCCc-ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH-hcCCCCCeEEecCCC
Q 013675          158 TNPLHL-DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSA  235 (438)
Q Consensus       158 ~n~~~~-~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~-~~G~~~~~Viv~~~~  235 (438)
                      .||..- ......+++.++.++.+++++|+++.+    +  +||+|||||+++|++.+...... ++|   .+||++...
T Consensus        30 gNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~e----I--iFTSG~TEsnNlaI~g~~~a~~~~~~~---~HIIts~iE  100 (386)
T COG1104          30 GNPSSLHSFGREARKAVEEAREQIAKLLGADPEE----I--IFTSGATESNNLAIKGAALAYRNAQKG---KHIITSAIE  100 (386)
T ss_pred             CCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCe----E--EEecCCcHHHHHHHHhhHHhhhcccCC---CeEEEcccc
Confidence            455442 223457888889999999999999976    7  99999999999999985433322 234   699999999


Q ss_pred             cCcHHHHHhhc---CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675          236 HSAYDKAAQYF---NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       236 h~s~~~a~~~~---Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~  312 (438)
                      |+++...++++   |++|.++|++++|.+|+++|+++|+++|.+|.+.+.||.+|++.||++|+++|+++++++|+|+++
T Consensus       101 H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQ  180 (386)
T COG1104         101 HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQ  180 (386)
T ss_pred             cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhh
Confidence            99999999998   999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                               .+|+ + ++|....++|++++|+||+ +||+|+|++++|+. .+-     .+-..||    .+..|.|+|+
T Consensus       181 ---------a~Gk-i-pi~~~~~~vD~ls~SaHK~-~GpkGiGaLyv~~~-~~~-----~p~i~GG----gQE~g~RsGT  238 (386)
T COG1104         181 ---------AVGK-I-PIDLEELGVDLLSFSAHKF-GGPKGIGALYVRPG-VRL-----EPLIHGG----GQERGLRSGT  238 (386)
T ss_pred             ---------hcCc-e-eccccccCcceEEeehhhc-cCCCceEEEEECCC-Ccc-----CceeccC----cCCCCCCCCC
Confidence                     5665 5 5888888999999999999 89999999998543 221     1112233    3455667764


Q ss_pred             ----hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC-CCccc
Q 013675          393 ----LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF-PMFLP  435 (438)
Q Consensus       393 ----~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~g~~~  435 (438)
                          .++++-.|++ +..+.+++...+...++++|.+.|.+. |++.+
T Consensus       239 env~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~  285 (386)
T COG1104         239 ENVPGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLLEIIPDVYL  285 (386)
T ss_pred             ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence                4667777765 456778888999999999999999975 77765

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-31  Score=263.35  Aligned_cols=265  Identities=23%  Similarity=0.268  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHHhhccCCC--CcccchhHHHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHH
Q 013675          144 HFSLINEACSMFAHTNPL--HLDIFQSVARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRN  220 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~--~~~~~~~~~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~  220 (438)
                      +.+.+.+.+..+ +.|..  .+..+....+..++.++.+++++|+++ ++    |  +||.|.|+|+.+...++...  .
T Consensus        38 V~~a~~~~~~~~-~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~e----I--vft~~tT~aln~va~~l~~~--~  108 (405)
T COG0520          38 VLDAVAEYYRRY-NANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDE----I--VFTRGTTEALNLVARGLGRS--L  108 (405)
T ss_pred             HHHHHHHHHHhh-cCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCe----E--EEeCChhHHHHHHHHHhhhh--h
Confidence            344444444332 33333  445666778889999999999999995 55    6  99999999999999988643  2


Q ss_pred             hcCCCCCeEEecCCCcCc----HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHH
Q 013675          221 KRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELG  296 (438)
Q Consensus       221 ~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~  296 (438)
                      ++|   |+||++...|++    |...++..|++++.+|+++++.+|.+++++.++++|++|.+++.+|.||.+.|+++|+
T Consensus       109 ~~g---deIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~  185 (405)
T COG0520         109 KPG---DEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIA  185 (405)
T ss_pred             cCC---CEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHH
Confidence            367   999999999988    6677777899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS  376 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~  376 (438)
                      ++||++|++++||++++....           ++|+...|+|++.+|+|||++||.|+|++++|++.+.+.    .|...
T Consensus       186 ~la~~~ga~v~VDaaq~~~h~-----------~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l----~P~~~  250 (405)
T COG0520         186 ELAHEHGALVLVDAAQAAGHL-----------PIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEEL----EPFLG  250 (405)
T ss_pred             HHHHHcCCEEEEECccccCcc-----------CCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhc----CCccc
Confidence            999999999999999765443           588899999999999999999999999999986544332    11111


Q ss_pred             CCcc---C------------CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          377 GGLY---V------------SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       377 g~~~---~------------~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      |+..   .            .....|+.....+.++-++++++...|++++.++.+++++++.+.|+++|++++
T Consensus       251 gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i  324 (405)
T COG0520         251 GGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEI  324 (405)
T ss_pred             CCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            2111   0            112234444555678889999999999999999999999999999999999875

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.97  E-value=3.9e-29  Score=257.84  Aligned_cols=306  Identities=21%  Similarity=0.229  Sum_probs=220.6

Q ss_pred             CCCCCCCCCCCc-HHHHHHHHHHhCCCCCCC-CCceeeeecC-CCCcchHHHHHHHHHHH--hhccCCCCcc-cchhHHH
Q 013675           98 GWWTELPRAGLG-VGVIEKLKEEKGKDVVWQ-GKCSGTVYIG-GSEAEGHFSLINEACSM--FAHTNPLHLD-IFQSVAR  171 (438)
Q Consensus        98 ~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~-~~~~g~~~~~-~~~~~~~~~~~~~~~~~--~~~~n~~~~~-~~~~~~~  171 (438)
                      .....||+  +| .|++++++++..++.... ++ .|..++. +.+    ..+.......  +.+.+|++++ .+++..+
T Consensus        41 ~~~~~~~~--~se~~~~~~~~~l~~~n~~~~~~~-~g~G~~~~~~~----p~i~~~~~~~~~~~~~tpYq~e~~sqG~le  113 (481)
T PRK04366         41 KEPPELPE--VSELEVVRHYTRLSQKNYGVDTGF-YPLGSCTMKYN----PKINEKVARLPGFAELHPLQPEETVQGALE  113 (481)
T ss_pred             CCCCCCCC--CCHHHHHHHHHHHHhcCCCCCcce-ecCcccCCCCC----HHHHHHHHhCcchhcCCCCCChhhhhHHHH
Confidence            34567888  89 999999999966665433 33 3333222 222    2233333322  4577788876 8999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      +..++++++++++|++..       .+..++|+.+...++..++.... .+|- .+++|+++.+.|+++..+++..|+++
T Consensus       114 l~~~~~~~la~l~G~~~~-------~l~~~~GA~a~~~~l~~~r~~~~-~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~v  185 (481)
T PRK04366        114 LMYELQEWLKEITGMDAV-------TLQPAAGAHGELTGLLMIRAYHE-ARGDTKRTEVIVPDSAHGTNPASAAMAGFKV  185 (481)
T ss_pred             HHHHHHHHHHHHhCCCce-------EEEeCcHHHHHHHHHHHHHHHhh-ccCcCCCCEEEEcCCccHhHHHHHHHcCCEE
Confidence            999999999999999743       25656676666665554443221 2441 34699999999999999999999999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc-cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      +.+|+++++.+|+++|+++++++|++|++++|| ++|.+ +|+++|+++|+++|+++|||+|+...++      |    .
T Consensus       186 v~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~------g----~  254 (481)
T PRK04366        186 VEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAIL------G----K  254 (481)
T ss_pred             EEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhc------c----c
Confidence            999998889999999999999999999999998 89988 5899999999999999999999743322      1    2


Q ss_pred             CccCCCCccEEEeCCCCCCCCCC-----CcEEEEEecccccccchhcccccCCCcc-CCC--------CccCCCCCchHH
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPK-----GTSVVLYRNREIRKHQFVAVTEWSGGLY-VSP--------TVAGSRPGGLIA  395 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~-----g~g~l~~r~~~~~~~~~~~~~~~~g~~~-~~~--------~~~gsr~~~~ia  395 (438)
                      .+....|+|++++++|||+++|.     |+|++.++++..+...-... .+.+..+ ...        .-.++.....+.
T Consensus       255 ~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v-~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~  333 (481)
T PRK04366        255 ARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVV-EKDGDRYRLDYDRPKSIGRVRAFYGNFGVLV  333 (481)
T ss_pred             CCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCee-eccCCceeecccccccCCCcccccCchHHHH
Confidence            34567799999999999987664     45688888653332110000 0111111 000        011111223466


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++|..+..+|.+|++++.+++..++++++++|+++
T Consensus       334 ~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~  368 (481)
T PRK04366        334 RAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI  368 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            88889999999999999999999999999999876

>PLN02651 cysteine desulfurase

Probab=99.97  E-value=6.8e-29  Score=248.26  Aligned_cols=243  Identities=23%  Similarity=0.255  Sum_probs=197.8

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh-
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ-  244 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~-  244 (438)
                      .+...++.+++++.+++++|.++++    +  ++|+|+|+++++++.++..... ++|   ++|+++...|+++...+. 
T Consensus        38 ~~~~~~~~~~~r~~la~~~g~~~~~----v--~~t~~~t~a~~~~l~~~~~~~~-~~g---~~vl~~~~~h~s~~~~~~~  107 (364)
T PLN02651         38 GWESEDAVEKARAQVAALIGADPKE----I--IFTSGATESNNLAIKGVMHFYK-DKK---KHVITTQTEHKCVLDSCRH  107 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCe----E--EEeCCHHHHHHHHHHHHHHhcc-CCC---CEEEEcccccHHHHHHHHH
Confidence            3456777888999999999998765    6  8999999999999988754322 345   899999999998765544 


Q ss_pred             --hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          245 --YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       245 --~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                        ..|++++.+|+++++.+|+++++++|+++|+++++++++|+||.+.|+++|+++||++|+++|||++++.+.+     
T Consensus       108 ~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~-----  182 (364)
T PLN02651        108 LQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI-----  182 (364)
T ss_pred             HHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCc-----
Confidence              4589999999988899999999999999999999999999999999999999999999999999999865444     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                            ++++...|+|++++++||| ++|.|+|+++++++.....    .+.+.|+........|+.+...++++.++++
T Consensus       183 ------~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l----~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~  251 (364)
T PLN02651        183 ------PVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRVRL----EPLMSGGGQERGRRSGTENTPLVVGLGAACE  251 (364)
T ss_pred             ------ccCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCCCC----CccccCCCccCCccCCCccHHHHHHHHHHHH
Confidence                  4777888999999999999 7999999999987543321    1222232222223457777777889999998


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      .+.. +.+++.++..++++++.+.|++ +|++++
T Consensus       252 ~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i  284 (364)
T PLN02651        252 LAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRV  284 (364)
T ss_pred             HHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence            8764 5588889999999999999985 677765

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.97  E-value=2.1e-28  Score=262.06  Aligned_cols=301  Identities=15%  Similarity=0.186  Sum_probs=231.4

Q ss_pred             Cc-HHHHHHHHHHhCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcc-cchhHHHHHHHHHHHHHHHh
Q 013675          108 LG-VGVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLD-IFQSVARFEAEVIAMTAALL  184 (438)
Q Consensus       108 ~~-~~i~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~e~~~~~~~a~l~  184 (438)
                      .| .|++++++++..++.... +++.++.|....++  ..+.+.-....|....|++|+ .++|..+++.++.+|+++++
T Consensus       466 ~sE~e~~r~~~~L~~kn~~~~~~fi~lGsctmk~na--~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~elt  543 (939)
T TIGR00461       466 HSETEMLRYLHRLESKDLALNNSMIPLGSCTMKLNA--TAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSIT  543 (939)
T ss_pred             CCHHHHHHHHHHHHhcCCCccccCCCCccCCCccCH--HHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHH
Confidence            38 999999999966665544 66666666655442  445554445667778899998 99999999999999999999


Q ss_pred             CCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC-CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCH
Q 013675          185 GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADV  263 (438)
Q Consensus       185 g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G-~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~  263 (438)
                      |++.       +++..++|+.|..++++++|.+... +| -.+.+|++|..+|.+..+.++..|++++.||++++|.+|+
T Consensus       544 Gmd~-------~Sl~p~aGA~gE~agL~aiR~y~~~-rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDl  615 (939)
T TIGR00461       544 GFDA-------ISLQPNSGAQGEYAGLRVIRSYHES-RGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDL  615 (939)
T ss_pred             CCCC-------cccCCchHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCH
Confidence            9994       4488999999999999998876543 33 2457899999999999999999999999999999999999


Q ss_pred             HHHHHhhcc---CcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccE
Q 013675          264 KAIKKYINR---NTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTS  339 (438)
Q Consensus       264 ~~Le~~I~~---~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvds  339 (438)
                      ++|++++++   +|++|++++|+| +|.++| +++|+++||++|.+++||+|+......          ..+....|+|+
T Consensus       616 e~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~----------l~~Pg~~GaDi  684 (939)
T TIGR00461       616 VDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVG----------LTSPGDLGADV  684 (939)
T ss_pred             HHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCC----------CCCccccCCCE
Confidence            999999984   899999999999 899987 999999999999999999997432211          22346778999


Q ss_pred             EEeCCCCCCC-----CCCCcEEEEEecccccccchh----cccccCCCc-cCCCCc-cCCCCCchHHHHHHHHHHHcHHH
Q 013675          340 ISVDVHKYGL-----APKGTSVVLYRNREIRKHQFV----AVTEWSGGL-YVSPTV-AGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       340 is~s~hK~~~-----~p~g~g~l~~r~~~~~~~~~~----~~~~~~g~~-~~~~~~-~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      ++++.||+++     ||+|+|++.+|++ +......    ...+..+.. ...... ..++........|+.++.+|.+|
T Consensus       685 ~~~s~HKtf~~P~G~GGPg~G~i~vr~~-L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~G  763 (939)
T TIGR00461       685 CHLNLHKTFCIPHGGGGPGMGPIGVKSH-LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEG  763 (939)
T ss_pred             EEecCCccCCCCCCCCCCCeEEEEEhhh-chhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHH
Confidence            9999999876     6666799999964 2221100    000111100 000011 12233334568899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 013675          409 YLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +++..+....+|+|++++|++.
T Consensus       764 L~~~a~~ailnAnYl~~rL~~~  785 (939)
T TIGR00461       764 LPKASVVAILNANYMATRLKDH  785 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999873

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.97  E-value=4.9e-29  Score=251.02  Aligned_cols=289  Identities=17%  Similarity=0.173  Sum_probs=212.7

Q ss_pred             CCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC---------CCceee--------eecC---CCCcchHHHHHHHHHHHhh
Q 013675           99 WWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ---------GKCSGT--------VYIG---GSEAEGHFSLINEACSMFA  156 (438)
Q Consensus        99 ~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~---------~~~~g~--------~~~~---~~~~~~~~~~~~~~~~~~~  156 (438)
                      ....||++|++ +.|...+.++ ..+..+|.         +|+++.        +|+|   ..+   +.+..-+      
T Consensus        26 ~~~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~---l~~~q~k------   96 (444)
T TIGR03531        26 EQRKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGD---LVAPQPK------   96 (444)
T ss_pred             HcCcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhcccceecCCCCccc---ccccCcc------
Confidence            34569999999 9999998888 33555563         556555        5554   111   2111111      


Q ss_pred             ccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChH-HHHHHHHHHHHHHHHHhcCCCCCeEEecCCC
Q 013675          157 HTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT-ESILLAVKSSRDYMRNKRGITRPEMIIPVSA  235 (438)
Q Consensus       157 ~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt-~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~  235 (438)
                            ...++....+..++.+++++++|.+...     .+++++||| .++.+++.+++...  .+|   ++||+|..+
T Consensus        97 ------a~gss~~~~l~~~~e~~~~~~~G~~~~~-----~a~~v~~~Tg~al~laL~alr~~~--~~g---d~VI~p~~t  160 (444)
T TIGR03531        97 ------AAGSSLLYKLTNKLVKDFLKLLGLRSIK-----SAFVVPLATGMSLSLCLSALRHKR--PKA---KYVIWPRID  160 (444)
T ss_pred             ------ccCccHHHHHHHHHHHHHHHHcCCCCCC-----EEEEECCHHHHHHHHHHHHcCCcC--CCC---CEEEEECcC
Confidence                  1234557889999999999999998543     348899999 79999988876311  134   899999999


Q ss_pred             cCcHHHHHhhcCcEEEEeeC--C-CCCccCHHHHHHhhcc---CcEEEEEecC-CCCCccccCHHHHHHHHHHcCCeEEE
Q 013675          236 HSAYDKAAQYFNIKLWRVPV--D-KEFRADVKAIKKYINR---NTVLIVGSAP-GFPHGIIDPIQELGELALSHGTCLHV  308 (438)
Q Consensus       236 h~s~~~a~~~~Gi~v~~v~~--~-~~~~~d~~~Le~~I~~---~t~~vv~~~~-~~~tG~iddi~~I~~la~~~~i~lhV  308 (438)
                      |.+..+++.+.|++++.||+  + +++.+|+++|+++|++   ++.+++++.| ++.+|..||+++|+++|++||+|+|+
T Consensus       161 h~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIv  240 (444)
T TIGR03531       161 QKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIV  240 (444)
T ss_pred             hHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEE
Confidence            99999999999999999995  3 4799999999999986   4445444444 46667999999999999999999999


Q ss_pred             eccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675          309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       309 D~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      |+|||.....+.+     .+.-......+|++++|+||++..|.++|+++++++++.+...   ..|.+          +
T Consensus       241 DaAyg~~~~~~~~-----~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~---~~y~g----------~  302 (444)
T TIGR03531       241 NNAYGLQSNKYME-----LINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEIS---KSYPG----------R  302 (444)
T ss_pred             ECcCcCcChhhhh-----hhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHH---HhccC----------C
Confidence            9999864321111     0000111123799999999999999888888888887664321   12322          1


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ........+|+++..+|.+|+++.+++..++++++.+.|+++
T Consensus       303 ~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l  344 (444)
T TIGR03531       303 ASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKL  344 (444)
T ss_pred             CCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222345689999999999999999999999999999999875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.96  E-value=5.8e-28  Score=248.01  Aligned_cols=321  Identities=17%  Similarity=0.171  Sum_probs=223.7

Q ss_pred             Hhhhhhccccccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCC--CCCceee-eecCCCCcchHHHHHHHHHHHhhc
Q 013675           83 KVVDKMQSGVKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVW--QGKCSGT-VYIGGSEAEGHFSLINEACSMFAH  157 (438)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~--~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~  157 (438)
                      +.++++...++.. +.....+||+.+ | +++++++.++..++..+  ...+.|. .++...+ +.....+.. -.....
T Consensus        22 ~~~~~~~~~~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p-~~~~~~~~~-~~~~~~   98 (447)
T PRK00451         22 KSIDELFADIPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIP-AVVDHIISR-SEFYTA   98 (447)
T ss_pred             CCHHHHHHhCCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCc-HHHHHHHhc-hhHHHh
Confidence            4455666555544 455677899976 8 99999999985444332  3333332 3333322 111222211 122334


Q ss_pred             cCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          158 TNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       158 ~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      .|+++++.+++.++.+.+.++++++++|++.++    +  ++|+|||+++..++.+.+.    .+|   ++|+++.+.|+
T Consensus        99 y~~~~~~~~~g~~~~~~e~~~~la~l~g~~~~~----v--~~~~g~t~~~~~~~~a~~~----~~g---~~Vlv~~~~~~  165 (447)
T PRK00451         99 YTPYQPEISQGTLQAIFEYQTMICELTGMDVAN----A--SMYDGATALAEAALMAVRI----TKR---KKVLVSGAVHP  165 (447)
T ss_pred             cCCCCCccchHHHHHHHHHHHHHHHHhCCCcce----E--EecCcHHHHHHHHHHHHHh----cCC---CEEEEeCccCH
Confidence            677777889999999999999999999998764    4  8999999988877776542    255   89999999999


Q ss_pred             cHHHHHhh----cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE--ecc
Q 013675          238 AYDKAAQY----FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV--DLC  311 (438)
Q Consensus       238 s~~~a~~~----~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhV--D~a  311 (438)
                      ++.++++.    .|++++.+|++++ .+|+++++++|+++|++|++++| |+||.++|+++|+++|+++|+|+++  |..
T Consensus       166 ~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~  243 (447)
T PRK00451        166 EYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV  243 (447)
T ss_pred             HHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH
Confidence            99988765    5999999999888 99999999999999999999998 7899999999999999999999998  644


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC----CCCCCCcEEEEEecccccccchhcccccC----CCc-cC-
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY----GLAPKGTSVVLYRNREIRKHQFVAVTEWS----GGL-YV-  381 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~----~~~p~g~g~l~~r~~~~~~~~~~~~~~~~----g~~-~~-  381 (438)
                      ..|          . +  ......++|+++.++|||    .++++|+|+++++++...... .....|.    +.. +. 
T Consensus       244 ~~g----------~-~--~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~  309 (447)
T PRK00451        244 SLG----------L-L--KPPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMP-GRLVGETVDADGKRGFVL  309 (447)
T ss_pred             Hhc----------c-C--CCcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCC-CCEeeeecccCCCeeeEe
Confidence            221          1 1  112456899999999997    244558999887754332211 0001110    000 00 


Q ss_pred             --------CCCccCCCC-C----chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          382 --------SPTVAGSRP-G----GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       382 --------~~~~~gsr~-~----~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                              .....++.. +    ....+.+++++.++.+|++++.+++.++++++.++|++++++++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~  376 (447)
T PRK00451        310 TLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVEL  376 (447)
T ss_pred             eccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEe
Confidence                    000011111 1    11134445667789999999999999999999999999988765

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.96  E-value=5.8e-27  Score=255.13  Aligned_cols=297  Identities=18%  Similarity=0.204  Sum_probs=221.6

Q ss_pred             CCc-HHHHHHHHHHhCCCCCCC-C-CceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHHHHHHHHHHHHH
Q 013675          107 GLG-VGVIEKLKEEKGKDVVWQ-G-KCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVARFEAEVIAMTAA  182 (438)
Q Consensus       107 g~~-~~i~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~~e~~~~~~~a~  182 (438)
                      -.| .|++++++++..++.... + -+.|+++...++   ......-....|....|+++ +.+++..+++.++++|+++
T Consensus       477 ~~sE~e~~r~~~~l~~kn~~~~~~~i~lGsct~~~~p---~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~e  553 (954)
T PRK05367        477 YHSETEMMRYLRRLEDKDLALDRSMIPLGSCTMKLNA---AAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAE  553 (954)
T ss_pred             CCCHHHHHHHHHHHHhcCcCcccceeeCCcCCCcCCH---HHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            458 899999999977666543 3 347777666665   33333333455667788998 8999999999999999999


Q ss_pred             HhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCcc
Q 013675          183 LLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRA  261 (438)
Q Consensus       183 l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~  261 (438)
                      ++|++..       ....+||++|+..++.++|.+.. .+|. .+++|++|..+|.+..+++...|++++.+|+++++.+
T Consensus       554 ltG~d~~-------sl~~~~ga~ge~agL~a~r~~~~-~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~i  625 (954)
T PRK05367        554 ITGYDAV-------SLQPNAGAQGEYAGLLAIRAYHE-SRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNI  625 (954)
T ss_pred             HHCCCCE-------EECccHHHHHHHHHHHHHHHHhh-ccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCc
Confidence            9999842       25567888988888888776433 2453 3467999999999999999999999999999989999


Q ss_pred             CHHHHHHhhcc---CcEEEEEecCCCCCcc-ccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc
Q 013675          262 DVKAIKKYINR---NTVLIVGSAPGFPHGI-IDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV  337 (438)
Q Consensus       262 d~~~Le~~I~~---~t~~vv~~~~~~~tG~-iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv  337 (438)
                      |+++|++++++   ++++|++++|++. |. .+|+++|+++||++|+++|||+|+.+..+++          .+....|+
T Consensus       626 D~~~L~~~i~~~~~~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l----------~~pg~~GA  694 (954)
T PRK05367        626 DLDDLRAKAEEHADNLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGL----------ARPGDIGA  694 (954)
T ss_pred             CHHHHHHHHhccCCCeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCC----------CChhhcCC
Confidence            99999999975   4789999999985 55 4899999999999999999999986554431          12346789


Q ss_pred             cEEEeCCCCCCCCCC-----CcEEEEEecccccccchhcccccCCCccCC----CCccCCCCC--chHHHHHHHHHHHcH
Q 013675          338 TSISVDVHKYGLAPK-----GTSVVLYRNREIRKHQFVAVTEWSGGLYVS----PTVAGSRPG--GLIAGAWAALMSLGQ  406 (438)
Q Consensus       338 dsis~s~hK~~~~p~-----g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~----~~~~gsr~~--~~ia~~~aal~~~g~  406 (438)
                      |++++++|||++.|.     |+|++.+++. +...    .+.+..+....    .....+..+  ..+...|+.++.+|.
T Consensus       695 Di~~~s~HK~f~~P~G~GGPg~G~l~vr~~-l~p~----lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~  769 (954)
T PRK05367        695 DVSHLNLHKTFCIPHGGGGPGVGPIGVKAH-LAPF----LPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGA  769 (954)
T ss_pred             CEEEecCcccCCCCcCCCCCceEEEeeccc-cccc----CCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCH
Confidence            999999999975554     4669888742 2211    11221100000    011111111  123357888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +|+++..++.+.+|+|++++|++.
T Consensus       770 ~Glr~~a~~~~~~A~Yl~~~L~~~  793 (954)
T PRK05367        770 EGLRQATEVAILNANYIAKRLKDH  793 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999774

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.96  E-value=4.7e-27  Score=238.06  Aligned_cols=239  Identities=21%  Similarity=0.269  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh---hc
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ---YF  246 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~---~~  246 (438)
                      .+..+++++.+++++|.++++    +  ++|+|+|+++.+++.++.... ..+|   ++|+++..+|+++..++.   ..
T Consensus        46 ~~~~~~~r~~la~~~g~~~~~----v--~~~~g~t~a~~~~l~~l~~~~-~~~g---~~Vi~~~~~h~s~~~~~~~~~~~  115 (402)
T TIGR02006        46 EEAVENARNQVAELIGADSRE----I--VFTSGATESNNLAIKGIAHFY-KSKG---NHIITSKTEHKAVLDTCRYLERE  115 (402)
T ss_pred             HHHHHHHHHHHHHHhCCCCCe----E--EEeCCHHHHHHHHHHHHHHhh-cCCC---CEEEECCCccHHHHHHHHHHHhc
Confidence            456778899999999998765    6  999999999999988875321 1255   899999999999776654   45


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      |++++.+|+++++.+|+++++++++++|+++++++++|++|.+.|+++|.++|+++|+++|||++++.+..         
T Consensus       116 g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~---------  186 (402)
T TIGR02006       116 GFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI---------  186 (402)
T ss_pred             CCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCc---------
Confidence            99999999998899999999999999999999999999999999999999999999999999999764433         


Q ss_pred             CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          327 IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       327 ~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                        +++....++|++++++||+ ++|+|+|+++++++.......    .+.++........|+.+...++++..+++.+ .
T Consensus       187 --~~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~~~~~~~~----~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-~  258 (402)
T TIGR02006       187 --PINVNELKVDLMSISGHKI-YGPKGIGALYVRRKPRVRLEA----LIHGGGHERGMRSGTLPTHQIVGMGEAFRIA-K  258 (402)
T ss_pred             --ccCccccCCCEEEEehhhh-cCCCceEEEEEccCCCCCCCc----eecCCCccCCccCCCccHHHHHHHHHHHHHH-H
Confidence              3566677899999999997 789999999998764432211    1222222112234556666677888888765 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++++++.++..++++++.+.|+++|++++
T Consensus       259 ~~~~~~~~~~~~l~~~l~~~l~~~~~v~~  287 (402)
T TIGR02006       259 EEMAQDTAHVLALRDRLLNGIKSIEEVYL  287 (402)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            57888899999999999999999888754

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.96  E-value=8.9e-27  Score=231.99  Aligned_cols=244  Identities=23%  Similarity=0.227  Sum_probs=192.9

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH---
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA---  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~---  243 (438)
                      ....+..+++++.+++++|.++++    +  ++|+|+|+++..++.++..... .+|  +++|+++...|+++....   
T Consensus        38 ~~~~~~~~~~r~~la~~~g~~~~~----v--~~~~g~t~a~~~~l~~l~~~~~-~~g--~~~vi~~~~~~~s~~~~~~~~  108 (353)
T TIGR03235        38 HNAKKAVERARKQVAEALGADTEE----V--IFTSGATESNNLAILGLARAGE-QKG--KKHIITSAIEHPAVLEPIRAL  108 (353)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCe----E--EEeCCHHHHHHHHHHHHHHhcc-cCC--CCeeeEcccccHHHHHHHHHH
Confidence            345567788999999999998765    6  8999999999999988764211 122  267999999999876554   


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      +..|++++.+|+++++.+|+++++++++++|++|++++++|++|.+.|+++|.++|+++|+++|||++++.+..      
T Consensus       109 ~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~------  182 (353)
T TIGR03235       109 ERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI------  182 (353)
T ss_pred             HhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc------
Confidence            44699999999988899999999999999999999999999999999999999999999999999999764433      


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS  403 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~  403 (438)
                           +++....++|++++++||| ++|+|+|+++++++......  ..+.+.++........|+.+...++++.++++.
T Consensus       183 -----~~~~~~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~  254 (353)
T TIGR03235       183 -----TVDLSADRIDLISCSGHKI-YGPKGIGALVIRKRGKPKAP--LKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEI  254 (353)
T ss_pred             -----cccccccCCCEEEeehhhc-CCCCceEEEEEccCcccccc--cCceeeCCCCcCccccCCCChHHHHHHHHHHHH
Confidence                 4666777899999999999 79999999999876332111  111122222222233566666778888888886


Q ss_pred             HcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          404 LGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       404 ~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      + .++.+++.++..++++++++.|++ +|+++
T Consensus       255 ~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~  284 (353)
T TIGR03235       255 A-RRNAQAWEVKLRAMRNQLRDALQT-LGVKL  284 (353)
T ss_pred             H-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEE
Confidence            5 468889999999999999999988 67764

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.96  E-value=4.5e-27  Score=238.56  Aligned_cols=244  Identities=19%  Similarity=0.213  Sum_probs=196.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----H
Q 013675          165 IFQSVARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----Y  239 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~  239 (438)
                      ..+...+..+++++.+++++|. ++++    +  ++|+|+|+++..++.++... ..++|   ++|+++...|++    +
T Consensus        61 ~~~~~~~~~~~~r~~la~~~~~~~~~~----v--~~t~g~t~~l~~~~~~~~~~-~~~~g---d~vl~~~~~~~s~~~~~  130 (406)
T PRK09295         61 LSAQATEKMENVRKQAALFINARSAEE----L--VFVRGTTEGINLVANSWGNS-NVRAG---DNIIISEMEHHANIVPW  130 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcCCCCe----E--EEeCCHHHHHHHHHHHhhhh-cCCCc---CEEEECcchhhHHHHHH
Confidence            3555677788899999999998 4454    6  89999999999988876321 11356   899999999876    4


Q ss_pred             HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ...++..|++++.+|+++++.+|+++++++++++|++|++++++|+||.+.|+++|+++|+++|+++++|++++.+..  
T Consensus       131 ~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~--  208 (406)
T PRK09295        131 QMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHH--  208 (406)
T ss_pred             HHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCcc--
Confidence            566778899999999988899999999999999999999999999999999999999999999999999999864332  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc-------------c---CCC
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL-------------Y---VSP  383 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~-------------~---~~~  383 (438)
                               +++....++|++++++||+ ++|.|+|+++++++. .+..    +.+.++.             +   ...
T Consensus       209 ---------~~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~~-~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~r  273 (406)
T PRK09295        209 ---------PVDVQALDCDFYVFSGHKL-YGPTGIGILYVKEAL-LQEM----PPWEGGGSMIATVSLTEGTTWAKAPWR  273 (406)
T ss_pred             ---------ccCchhcCCCEEEeehhhc-cCCCCcEEEEEchHh-HhhC----CCcccCCceeeeeecCCccccCCchhh
Confidence                     4566677899999999995 899999998887543 2221    1111110             0   011


Q ss_pred             CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ...|+.+...++++.++++.+.+.|++++.++..++++++.+.|++++++++
T Consensus       274 ~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~  325 (406)
T PRK09295        274 FEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTL  325 (406)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            2346677777889999999988889999999999999999999999988765

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.96  E-value=1e-26  Score=233.38  Aligned_cols=240  Identities=25%  Similarity=0.249  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHh
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQ  244 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~  244 (438)
                      ..+...++++++++++|.++.+   ++  ++|+|+|+++.+++.+..     ++|   ++|+++..+|+++.    ..++
T Consensus        42 ~~~~~~~~~~~la~~~~~~~~~---~v--~~~~g~t~al~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~~~~~  108 (376)
T TIGR01977        42 ASREVEETRQLLAKLFNAPSSA---HV--VFTNNATTALNIALKGLL-----KEG---DHVITTPMEHNSVARPLECLKE  108 (376)
T ss_pred             HHHHHHHHHHHHHHHhCcCCCC---eE--EEeCCHHHHHHHHHHhcc-----CCC---CEEEECcchhhHHHHHHHHHHH
Confidence            4466778899999999997542   15  899999999999888753     256   89999999998864    4566


Q ss_pred             hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          245 YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      .+|++++.++.++++.+|+++++++++++|+++++++++|+||.+.|+++|.++|+++|+++++|++++.+..       
T Consensus       109 ~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~-------  181 (376)
T TIGR01977       109 QIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVI-------  181 (376)
T ss_pred             HcCcEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCcc-------
Confidence            6799999999988888999999999999999999999999999999999999999999999999999865443       


Q ss_pred             CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC--cc-------CCCCccCCCCCchHH
Q 013675          325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG--LY-------VSPTVAGSRPGGLIA  395 (438)
Q Consensus       325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~--~~-------~~~~~~gsr~~~~ia  395 (438)
                          +++....++|++++++|||+++|.|+|+++++++..... +.  ..|.+.  .+       ......|+.+...++
T Consensus       182 ----~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~  254 (376)
T TIGR01977       182 ----PIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKP-LK--SGGTGSHSALIDQPSELPDRFESGTLNTPGIA  254 (376)
T ss_pred             ----CCCchhcCCCEEEecccccccCCCCceEEEEcCCcCcCc-ee--cCCCccccccccccccchhhccCCCCCHHHHH
Confidence                456677899999999999999999999999887652111 10  111110  00       011123556666788


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++.++++.+.+.|++.+.++..++++++.+.|++++++++
T Consensus       255 a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~  294 (376)
T TIGR01977       255 GLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKI  294 (376)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            9999999999999999999999999999999998888764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.95  E-value=1.1e-26  Score=234.96  Aligned_cols=244  Identities=21%  Similarity=0.220  Sum_probs=193.7

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----H
Q 013675          165 IFQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----Y  239 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~  239 (438)
                      ..+...+..+++++.+++++|.+ +++    +  ++|+|+|+++.+++.++... ..++|   ++|+++.++|++    +
T Consensus        54 ~~~~~~~~~~~~r~~la~~~g~~~~~~----i--~~t~g~t~~l~~~~~~~~~~-~~~~g---d~Vl~~~~~~~s~~~~~  123 (398)
T TIGR03392        54 QAQSLTARYELARQQVARFLNAPDAEN----I--VWTRGTTESINLVAQSYARP-RLQPG---DEIIVSEAEHHANLIPW  123 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCe----E--EEeCChHHHHHHHHHHhhhc-cCCCC---CEEEECCcchhHHHHHH
Confidence            34445667788999999999995 444    6  89999999999999887420 01256   899999999987    4


Q ss_pred             HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ...++..|++++.+|+++++.+|+++++++++++|++|++++++|+||.+.|+++|+++|+++|+++++|++++.+..  
T Consensus       124 ~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~--  201 (398)
T TIGR03392       124 LMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG--  201 (398)
T ss_pred             HHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCC--
Confidence            567788899999999988888999999999999999999999999999999999999999999999999999864332  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc----------c-----CCCC
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL----------Y-----VSPT  384 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~----------~-----~~~~  384 (438)
                               +++....++|++++++||+ ++|.|+|+++.+++ ..+..    ..|.++.          +     ....
T Consensus       202 ---------~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (398)
T TIGR03392       202 ---------PPDVQALDIDFYAFSGHKL-YGPTGIGVLYGKTE-LLEAM----PPWQGGGKMLSHVSFDGFIPQAVPHRF  266 (398)
T ss_pred             ---------CCChhhcCCCEEEEecccc-cCCCceEEEEEcHH-HHhhC----CCeecCCceEeeccccccccCCChhhc
Confidence                     3455556799999999995 79999999877654 32221    1122110          0     0111


Q ss_pred             ccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       385 ~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..|+.+...++++.++++.+...|++++.++..++++++.+.|+++|++++
T Consensus       267 e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~  317 (398)
T TIGR03392       267 EAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRS  317 (398)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            245666667889999999888888999999999999999999999988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.95  E-value=1.6e-26  Score=231.67  Aligned_cols=248  Identities=21%  Similarity=0.196  Sum_probs=193.6

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH---
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY---  239 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~---  239 (438)
                      ..++...+...++++.+++++|.+ +.+    +  ++|+|+|+++.+++.++....  .+|   ++|+++..+|++.   
T Consensus        36 ~~~~~~~~~~~~~~~~la~~~~~~~~~~----v--~~~~g~t~a~~~~~~~l~~~~--~~g---~~vl~~~~~~~~~~~~  104 (373)
T cd06453          36 ELSARATDAYEAAREKVARFINAPSPDE----I--IFTRNTTEAINLVAYGLGRAN--KPG---DEIVTSVMEHHSNIVP  104 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCe----E--EEeCCHHHHHHHHHHHhhhcC--CCC---CEEEECcchhHHHHHH
Confidence            345667778888999999999998 443    4  899999999999999876310  145   8999999999984   


Q ss_pred             -HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          240 -DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       240 -~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                       ...++..|++++.||++.++.+|++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+.. 
T Consensus       105 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-  183 (373)
T cd06453         105 WQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHM-  183 (373)
T ss_pred             HHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCce-
Confidence             456678899999999988899999999999999999999999999999999999999999999999999999864443 


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC--------CCccCC---CCccC
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS--------GGLYVS---PTVAG  387 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~--------g~~~~~---~~~~g  387 (438)
                                ++++...++|++++++|||+ +++|+|+++.+++.+..... ....|.        ...+..   ....|
T Consensus       184 ----------~~~~~~~~~d~~~~s~~K~~-~~~g~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~  251 (373)
T cd06453         184 ----------PVDVQDLGCDFLAFSGHKML-GPTGIGVLYGKEELLEEMPP-YGGGGEMIEEVSFEETTYADLPHKFEAG  251 (373)
T ss_pred             ----------eeeccccCCCEEEecccccc-CCCCcEEEEEchHHhhcCCC-eecCCCccccccccccccCCCccccCCC
Confidence                      24455668999999999995 55889988877543322211 110110        000000   01124


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.+...+++++++++.+...|++++.++..++++++.+.|+++|++++
T Consensus       252 t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~  299 (373)
T cd06453         252 TPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRV  299 (373)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            455556778999999998889999999999999999999999988765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.95  E-value=2.1e-26  Score=231.47  Aligned_cols=240  Identities=26%  Similarity=0.273  Sum_probs=190.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh-
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ-  244 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~-  244 (438)
                      ++...+..+++++++++++|.++++    +  ++|+|+|+++.+++.++....  .+|   ++|+++..+|+++...+. 
T Consensus        37 ~~~~~~~~~~~r~~la~~~g~~~~~----i--~~t~~~t~a~~~al~~~~~~~--~~~---~~vv~~~~~~~s~~~~~~~  105 (379)
T TIGR03402        37 GGEVGKAVEEAREQVAKLLGAEPDE----I--IFTSGGTESDNTAIKSALAAQ--PEK---RHIITTAVEHPAVLSLCQH  105 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCe----E--EEeCcHHHHHHHHHHHHHHhc--CCC---CeEEEcccccHHHHHHHHH
Confidence            3556777889999999999998765    6  899999999999998875321  133   789999999998765444 


Q ss_pred             --hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          245 --YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       245 --~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                        ..|++++.+|+++++.+|+++++++++++|+++++++++|++|.+.|+++|+++|+++|+++|+|++++.+..     
T Consensus       106 ~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~-----  180 (379)
T TIGR03402       106 LEKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI-----  180 (379)
T ss_pred             HHHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECccccccc-----
Confidence              3599999999988889999999999999999999999999999999999999999999999999999764332     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                            +++....++|++++++||+ ++|.|+|+++++++..      ..+.+.|+........|+.....++++.++++
T Consensus       181 ------~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~v~~~~~------~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~  247 (379)
T TIGR03402       181 ------PIDLKEMNIDMLSLSGHKL-HGPKGVGALYIRKGTR------FRPLLRGGHQERGRRAGTENVPGIVGLGKAAE  247 (379)
T ss_pred             ------ccCcccCCCCEEEEcHHHc-CCCCceEEEEECCCCC------CCCcccCCccCCCcCCCCccHHHHHHHHHHHH
Confidence                  4677778999999999994 8999999999986431      11222222211112234444455777778886


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      .. .+++++..++..++++++.+.|++ +|++++
T Consensus       248 ~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  280 (379)
T TIGR03402       248 LA-TEHLEEENTRVRALRDRLEAGLLARIPDARL  280 (379)
T ss_pred             HH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence            55 557888889999999999999986 887764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.95  E-value=2.1e-26  Score=233.25  Aligned_cols=243  Identities=22%  Similarity=0.233  Sum_probs=193.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HH
Q 013675          166 FQSVARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YD  240 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~  240 (438)
                      .....+..+++++.+++++|. ++++    |  ++|+|+|+++.+++.++... ..++|   ++|+++.+.|++    +.
T Consensus        58 ~~~~~~~~~~~r~~la~~~g~~~~~~----i--~~~~~~t~~i~~~~~~~~~~-~~~~g---d~vl~~~~~~~s~~~~~~  127 (401)
T PRK10874         58 AQRLTARYEAAREQVAQLLNAPDAKN----I--VWTRGTTESINLVAQSYARP-RLQPG---DEIIVSEAEHHANLVPWL  127 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCE----E--EEECCHHHHHHHHHHHhhhc-cCCCc---CEEEECCcchHHHHHHHH
Confidence            345667788899999999999 5554    6  89999999999999887420 01356   899999999976    55


Q ss_pred             HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      ..++..|++++.+|++.++.+|+++++++++++|++|++++++|+||.+.|+++|+++|+++|+++++|++++.+..   
T Consensus       128 ~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~---  204 (401)
T PRK10874        128 MVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHF---  204 (401)
T ss_pred             HHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccc---
Confidence            67788899999999988889999999999999999999999999999999999999999999999999999864332   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc----------c-----CCCCc
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL----------Y-----VSPTV  385 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~----------~-----~~~~~  385 (438)
                              +++....++|++++++||+ ++|.|+|+++.+++ ..+..    ..|.++.          +     .....
T Consensus       205 --------~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e  270 (401)
T PRK10874        205 --------PADVQALDIDFYAFSGHKL-YGPTGIGVLYGKSE-LLEAM----SPWQGGGKMLTEVSFDGFTPQSAPWRFE  270 (401)
T ss_pred             --------cCCchhcCCCEEEEecccc-cCCCccEEEEEchH-HHhcC----CCeecCCcceEeeccCccCCCCChhhcc
Confidence                    2455566799999999995 89999999887654 33221    1111110          0     01112


Q ss_pred             cCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          386 AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       386 ~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .|+.+...++++.+++..+...|+.++.+++.++++++.+.|+++||+++
T Consensus       271 ~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~  320 (401)
T PRK10874        271 AGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRS  320 (401)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            35555566788999999888888999999999999999999999988764

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.95  E-value=1e-26  Score=226.28  Aligned_cols=257  Identities=19%  Similarity=0.245  Sum_probs=189.9

Q ss_pred             HHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC
Q 013675          145 FSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI  224 (438)
Q Consensus       145 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~  224 (438)
                      .+.+.+++.. ...||.....+-......++.++.+|+|+|+++.+    |  +||+|+|||+.++++........  + 
T Consensus        60 ldam~~~~~~-~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~d----I--iFts~ATEs~Nlvl~~v~~~~~~--~-  129 (428)
T KOG1549|consen   60 LDAMLPYLLE-YLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSD----I--VFTSGATESNNLVLKGVARFFGD--K-  129 (428)
T ss_pred             HHHHHHHHHH-hhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCc----E--EEeCCchHHHHHHHHHhhccccc--c-
Confidence            3444555543 35566554112222333557899999999999987    7  99999999999999997643221  1 


Q ss_pred             CCCeEEecCCCcCcHHHHHhhc---CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH
Q 013675          225 TRPEMIIPVSAHSAYDKAAQYF---NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS  301 (438)
Q Consensus       225 ~~~~Viv~~~~h~s~~~a~~~~---Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~  301 (438)
                      .+.+||+...+|++....++.+   |++++.+|++.++..|++.+++.|+++|++|.+.+.||..|++.|+++|.++|++
T Consensus       130 ~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~  209 (428)
T KOG1549|consen  130 TKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICRE  209 (428)
T ss_pred             ccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCc
Confidence            1238999999999999888877   9999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC
Q 013675          302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV  381 (438)
Q Consensus       302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~  381 (438)
                      +|+.+|+|+|+         +.|+ + ++|....++|++++++||| ++|+|+|++++|.+..   .....+.+.||...
T Consensus       210 ~~v~v~~DaAQ---------avG~-i-~vDV~eln~D~~s~s~HK~-ygp~~iGaLYvr~~~~---~~~~~p~~~GGgq~  274 (428)
T KOG1549|consen  210 EGVQVHVDAAQ---------AVGK-I-PVDVQELNADFLSISAHKI-YGPPGIGALYVRRKRP---RLRVEPPLSGGGQE  274 (428)
T ss_pred             CCcEEEeehhh---------hcCC-c-cccHHHcCchheeeecccc-cCCCcceEEEEccCCC---cccccCcccCCccc
Confidence            99999999995         4554 4 5899999999999999999 8888899999986221   12233445555433


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL  427 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L  427 (438)
                      ...-.|++....+.++-.+.+...++ +.-....+.++...+..++
T Consensus       275 r~~rsGT~~~~~~~~~gsA~e~~~~~-~~~~~~~~~~~~~~ll~~i  319 (428)
T KOG1549|consen  275 RGLRSGTVATPLAVGLGSAAEFVNKE-MAYDEAIIKRLSEKLLMGI  319 (428)
T ss_pred             cccccCCcCchhhhhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHH
Confidence            33344555555666777777655332 1111222223555555554

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.95  E-value=4.4e-26  Score=231.03  Aligned_cols=247  Identities=21%  Similarity=0.177  Sum_probs=192.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----H
Q 013675          166 FQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----D  240 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~  240 (438)
                      .+...+..+++++.+++++|.+ +++    +  ++|+|+|+++.+++.++... ...+|   ++|+++.+.|++.    .
T Consensus        57 ~~~~~~~~~~~r~~ia~~~~~~~~~~----v--~~~~g~t~~l~~~~~~~~~~-~~~~g---~~vl~~~~~~~s~~~~~~  126 (403)
T TIGR01979        57 SVRATEAYEAVREKVAKFINAASDEE----I--VFTRGTTESINLVAYSWGDS-NLKAG---DEIVISEMEHHANIVPWQ  126 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCCCe----E--EEeCCHHHHHHHHHHHhhhh-cCCCC---CEEEECcchhhHHHHHHH
Confidence            3445566778999999999998 444    5  89999999999988876421 11256   8999999999873    4


Q ss_pred             HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      +.++..|++++.+|+++++.+|+++++++++++|++|++++++|++|.+.|+++|+++|+++|+++|+|++++.+..   
T Consensus       127 ~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~---  203 (403)
T TIGR01979       127 LLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHM---  203 (403)
T ss_pred             HHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCcc---
Confidence            66778899999999998899999999999999999999999999999999999999999999999999999864433   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC--------CccC---CCCccCCC
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG--------GLYV---SPTVAGSR  389 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g--------~~~~---~~~~~gsr  389 (438)
                              +++....++|++++++||+ ++|.|+|+++++++ ...........|..        ..+.   .....|+.
T Consensus       204 --------~~~~~~~~~d~~~~s~~K~-~gp~G~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~  273 (403)
T TIGR01979       204 --------PVDVQALDCDFYVFSGHKM-YGPTGIGVLYGKEE-LLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTP  273 (403)
T ss_pred             --------ccCccccCCCEEEEecccc-cCCCCceEEEEchH-HHhcCCCeecCCCceeecccCccccCCChhhcCCCCc
Confidence                    3556667899999999997 68999999888754 32211111001100        0000   01123555


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +...+++++++++.+...|++++.+++.++++++.+.|++++++++
T Consensus       274 ~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~  319 (403)
T TIGR01979       274 NIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRI  319 (403)
T ss_pred             cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            5566788899998887778899999999999999999999888765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.95  E-value=3.4e-26  Score=229.34  Aligned_cols=249  Identities=22%  Similarity=0.206  Sum_probs=200.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-  240 (438)
                      +..+....++.+++++.+++++|+++ .+    +  ++++|+|+++..++.++...  .++|   ++|++....|++.. 
T Consensus        35 ~~~~~~~~~~~~~~r~~la~~lg~~~~~~----v--~~~~~~t~a~~~~~~~l~~~--~~~g---~~vl~~~~~~~s~~~  103 (371)
T PF00266_consen   35 SHRSREFAEILEEAREALAKLLGAPPDEE----V--VFTSNGTEALNAVASSLLNP--LKPG---DEVLVTSNEHPSNRY  103 (371)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHTSSTTEE----E--EEESSHHHHHHHHHHHHHHH--GTTT---CEEEEEESSHHHHHH
T ss_pred             cchhhhhhHHHHHHHHHHHHhcCCccccc----c--ccccccchhhhhhhhccccc--cccc---ccccccccccccccc
Confidence            44556678888899999999999998 54    6  89999999999999998643  2356   89999999999865 


Q ss_pred             ---HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          241 ---KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       241 ---~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                         ..++..|++++.+|.+.++.+|+++++++|+++|++|++++.++.+|.+.|+++|+++||++|+++++|++++.+.+
T Consensus       104 ~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~  183 (371)
T PF00266_consen  104 PWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV  183 (371)
T ss_dssp             HHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS
T ss_pred             ccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccc
Confidence               45567799999999988899999999999999999999999999999999999999999999999999999764433


Q ss_pred             hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC-----------ccCCCCcc
Q 013675          318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG-----------LYVSPTVA  386 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~-----------~~~~~~~~  386 (438)
                                 ++|+...++|++++++|| +++|+|+|++++|++...+. ......|...           ........
T Consensus       184 -----------~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (371)
T PF00266_consen  184 -----------PIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERL-RPAKPGGGYLDFPSLQEYGLADDARRFEG  250 (371)
T ss_dssp             -----------S--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHH-HTSSSSSSTTTHHHHHHHCHHSTTTGSSS
T ss_pred             -----------cccccccccceeeecccc-cCCCCchhhheehhhhhhcc-ccccccccccccccchhcccccccccccc
Confidence                       578888999999999999 79999999999997543322 1111122100           00011123


Q ss_pred             CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      |+.+...++++..+++.+.+.|++++.++..++++++.+.|+++|++++
T Consensus       251 GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~  299 (371)
T PF00266_consen  251 GTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEV  299 (371)
T ss_dssp             SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred             cceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeE
Confidence            5666666788899999998899999999999999999999999988775

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.95  E-value=1.9e-25  Score=242.21  Aligned_cols=303  Identities=15%  Similarity=0.155  Sum_probs=232.4

Q ss_pred             CCCCCCCC--CCCc-HHHHHHHHHHhCCCCCCC--CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHH
Q 013675           98 GWWTELPR--AGLG-VGVIEKLKEEKGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVAR  171 (438)
Q Consensus        98 ~~~~~lP~--~g~~-~~i~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~  171 (438)
                      ..++.+|+  +-.| .++++++.++.+++....  -...|.+.+..++   -.++..-.+..|.+-.|+.+ +..+|..+
T Consensus       492 ~~~l~~p~f~~~~se~~~~r~~~~l~~~~~~~~~~~~plgsctmk~n~---~~~~~~~~~~~~~~~hp~~p~~~~~g~~~  568 (993)
T PLN02414        492 SPYLTHPIFNQYHSEHELLRYLHRLQNKDLSLVHSMIPLGSCTMKLNA---TTEMMPVTWPEFANIHPFAPVDQAQGYQE  568 (993)
T ss_pred             CccccCcccccccCHHHHHHHHHHHhhcccccccCCccCcccccccCc---hhhhhhhcCcchhhcCCCCCHHHHHHHHH
Confidence            33445564  4468 999999999966665544  3567888887776   44444445556777778876 56799999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChH----HHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhc
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT----ESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt----~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      +..++++++++++|++  .    +  ++++++|    +|++++++++.+    .+|- .+++|++|..+|.+....+...
T Consensus       569 ~~~~~r~~la~i~g~~--~----v--~f~pnaga~ge~a~~~vi~~~~~----~~Gd~~r~~vli~~~aH~sn~a~a~~~  636 (993)
T PLN02414        569 MFEDLGDLLCEITGFD--S----F--SLQPNAGAAGEYAGLMVIRAYHL----SRGDHHRNVCIIPVSAHGTNPASAAMC  636 (993)
T ss_pred             HHHHHHHHHHHHhCCC--e----E--EEcCCCcHHHHHHHHHHHHHHHh----ccCCCCCCEEEeCCCcCccCHHHHHHC
Confidence            9999999999999994  2    5  8999998    899999998853    2352 3458999999999999999999


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      |++++.||+|++|.+|+++|+++|++   +|++|++++|+|..|..+|+++|+++||++|+.++||+++.....      
T Consensus       637 G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~------  710 (993)
T PLN02414        637 GMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQV------  710 (993)
T ss_pred             CCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhcc------
Confidence            99999999999999999999999994   789999999999999999999999999999999999999743221      


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCC-----CCcEEEEEecccccccchhcccccCC---CccC---CCCccCCCCC-
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAP-----KGTSVVLYRNREIRKHQFVAVTEWSG---GLYV---SPTVAGSRPG-  391 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p-----~g~g~l~~r~~~~~~~~~~~~~~~~g---~~~~---~~~~~gsr~~-  391 (438)
                          ...+....|+|+++++.||++++|     +|+|++.++.+ +...    .+.|.-   +.+.   .....|++.. 
T Consensus       711 ----~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~-L~p~----lPg~~v~~~~~~~~r~~~s~iGt~~~a  781 (993)
T PLN02414        711 ----GLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPF----LPSHPVVPTGGIPRPEKTQPLGTISAA  781 (993)
T ss_pred             ----CcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh-hccc----CCCCccccCCCcccccCCCCcCCccch
Confidence                134456789999999999987655     45999888753 2221    222210   0011   1122355443 


Q ss_pred             -----chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          392 -----GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       392 -----~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                           ..+...|+-++.+|.+|+++..++...+++|++++|++.
T Consensus       782 ~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~  825 (993)
T PLN02414        782 PWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH  825 (993)
T ss_pred             hhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence                 223456777788999999999999999999999999874

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.95  E-value=1.8e-25  Score=224.94  Aligned_cols=237  Identities=19%  Similarity=0.222  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH---hhcC
Q 013675          172 FEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA---QYFN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~---~~~G  247 (438)
                      ..++.++.+++.+|+ ++++    +  ++|+|+|+++.++++++......++|  +++|+++...|+++...+   +..|
T Consensus        43 ~l~~a~~~~~~~~~~~~~~~----i--~~t~g~teal~~~~~~~~~~~~~~~~--~~~vi~~~~e~ps~~~~~~~~~~~G  114 (382)
T TIGR03403        43 AIAEALDKLYKGINARDLDD----I--IITSCATESNNWVLKGVYFDEILKGG--KNHIITTEVEHPAVRATCAFLESLG  114 (382)
T ss_pred             HHHHHHHHHHHHcCcCCCCe----E--EEeCCHHHHHHHHHHHHHHhhcccCC--CCEEEEcCCccHHHHHHHHHHHHCC
Confidence            344455566667776 4454    6  89999999999999886421110122  268999999999877654   4569


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      ++++.+|+++++.+|+++++++++++|+++++++++||||.+.|+++|.++|+++|+++|+|++++.+..          
T Consensus       115 ~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~----------  184 (382)
T TIGR03403       115 VEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI----------  184 (382)
T ss_pred             CEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCC----------
Confidence            9999999998899999999999999999999999999999999999999999999999999999763322          


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                       +++....++|++++++||| ++|+|+|++++|+...      ..+.+.|+........|+.+...++++..+++.. .+
T Consensus       185 -~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~vr~~~~------~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-~~  255 (382)
T TIGR03403       185 -PVDVQKAGVDFLSFSAHKF-HGPKGVGGLYIRKGVE------LTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLA-NE  255 (382)
T ss_pred             -ccCccccCCCEEEEcchhh-CCCCceEEEEECCCCC------CCCcccCCCCCCCcccCCcChHHHHHHHHHHHHH-HH
Confidence             3667778999999999998 7999999999886531      1122223222222223444445566777787654 44


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .++...++..++++++.+.|+++|++++
T Consensus       256 ~~~~~~~~~~~l~~~l~~~L~~~~~~~~  283 (382)
T TIGR03403       256 YLDFEKSHVRRLRDRLEDALLELPDVFV  283 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            5778888999999999999999888765

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.95  E-value=1.5e-25  Score=227.18  Aligned_cols=238  Identities=21%  Similarity=0.258  Sum_probs=184.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh---cC
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY---FN  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~---~G  247 (438)
                      +..+++++.+++++|.++++    +  ++|+|+|+++.+++.++.... .++|   ++|+++..+|+++..+++.   .|
T Consensus        49 ~~~~~~r~~ia~~~g~~~~~----v--~~~~g~t~al~~~l~~l~~~~-~~~g---d~Vi~~~~~~~s~~~~~~~~~~~g  118 (404)
T PRK14012         49 EAVDIARNQIADLIGADPRE----I--VFTSGATESDNLAIKGAAHFY-QKKG---KHIITSKTEHKAVLDTCRQLEREG  118 (404)
T ss_pred             HHHHHHHHHHHHHcCcCcCe----E--EEeCCHHHHHHHHHHHHHHhh-cCCC---CEEEEecCccHHHHHHHHHHHhCC
Confidence            45667888999999998765    5  899999999999998875321 1356   8999999999998666554   49


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      ++++.+++++++.+|+++++++|+++|++|++++++|+||.+.|+++|.++|+++|+++|+|++++.+..          
T Consensus       119 ~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~----------  188 (404)
T PRK14012        119 FEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKV----------  188 (404)
T ss_pred             CEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCc----------
Confidence            9999999998999999999999999999999999999999999999999999999999999999764333          


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                       +++....++|++++++||+ ++|.|+|+++++++...+.    .+.+.|+........|+.+...++++-+++... +.
T Consensus       189 -~~~~~~~~~D~~~~s~~K~-~gp~g~G~l~~~~~~~~~~----~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~  261 (404)
T PRK14012        189 -PIDLSKLKVDLMSFSAHKI-YGPKGIGALYVRRKPRVRL----EAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA-KE  261 (404)
T ss_pred             -ccCcccCCCCEEEEehhhc-cCCCceEEEEEecCCCCCC----CceecCCCccCCccCCCcCHHHHHHHHHHHHHH-Hh
Confidence             3455566899999999996 7899999999987643221    111222221111122344444455666666544 45


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +..+..++..++++++.+.|++++++++
T Consensus       262 ~~~~~~~~~~~l~~~l~~~L~~~~~i~~  289 (404)
T PRK14012        262 EMATENERIRALRDRLWNGIKDIEEVYL  289 (404)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            6778889999999999999998887654

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.95  E-value=1.1e-25  Score=229.74  Aligned_cols=246  Identities=20%  Similarity=0.183  Sum_probs=192.0

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHH
Q 013675          167 QSVARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDK  241 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~  241 (438)
                      ....+..+++++.+++++|.++ ++    +  ++|+|+|+++..++.++... ..++|   ++|+++...|++    +..
T Consensus        72 ~~~~~~~~~~r~~la~~~~~~~~~~----v--~~t~g~t~al~~i~~~~~~~-~~~~g---d~vl~~~~~~~s~~~~~~~  141 (424)
T PLN02855         72 AKATDAYELARKKVAAFINASTSRE----I--VFTRNATEAINLVAYTWGLA-NLKPG---DEVILSVAEHHSNIVPWQL  141 (424)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCE----E--EEeCCHHHHHHHHHHHhhhh-cCCCc---CEEEECCCccHHHHHHHHH
Confidence            3345566788999999999964 44    6  89999999999988764210 11356   899999999986    455


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .++..|++++.+|+++++.+|+++++++|+++|++|++++++|+||.+.|+++|+++|+++|+++++|++++....    
T Consensus       142 ~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~----  217 (424)
T PLN02855        142 VAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHM----  217 (424)
T ss_pred             HHHHcCCEEEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCc----
Confidence            6677899999999988778999999999999999999999999999999999999999999999999999753222    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC--------CccC---CCCccCCCC
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG--------GLYV---SPTVAGSRP  390 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g--------~~~~---~~~~~gsr~  390 (438)
                             +++....++|++++++||+ ++|.|+|+++++++.+ +........|..        ..+.   .....|+.+
T Consensus       218 -------~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~  288 (424)
T PLN02855        218 -------PVDVQTLGADFLVASSHKM-CGPTGIGFLWGKSDLL-ESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPA  288 (424)
T ss_pred             -------CCCchhcCCCEEEeecccc-cCCCccEEEEEchhhh-hcCCCEecCCCceeeeecCccccCCChhhccCCChH
Confidence                   4666777899999999996 8999999988875432 221111001100        0000   112245666


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ...++++.++++.+...|++++.+++.++++++++.|+++|++++
T Consensus       289 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i  333 (424)
T PLN02855        289 IGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRI  333 (424)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            667889999999888889999999999999999999999988765

>PRK02948 cysteine desulfurase; Provisional

Probab=99.94  E-value=1.6e-24  Score=218.09  Aligned_cols=237  Identities=23%  Similarity=0.252  Sum_probs=185.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH--
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a--  242 (438)
                      .......+.+++++.+++++|.++++    +  ++|+|+|+++..++.++.... .++|   ++|+++...|+++...  
T Consensus        37 ~~~~~~~~~~~~r~~la~~~g~~~~~----i--~~~~g~t~a~~~~~~~~~~~~-~~~g---~~vv~~~~~h~s~~~~~~  106 (381)
T PRK02948         37 IGGTASSLLQVCRKTFAEMIGGEEQG----I--YFTSGGTESNYLAIQSLLNAL-PQNK---KHIITTPMEHASIHSYFQ  106 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCe----E--EEeCcHHHHHHHHHHHHHHhc-cCCC---CEEEECCcccHHHHHHHH
Confidence            34455677889999999999998765    6  899999999999998876321 1245   7899999999987654  


Q ss_pred             -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                       ++..|++++.+|+++++.+|++++++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++++.       
T Consensus       107 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~-------  179 (381)
T PRK02948        107 SLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTF-------  179 (381)
T ss_pred             HHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhc-------
Confidence             455699999999988899999999999999999999999999999999999999999999999999988542       


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                        |. . +++....++|+++.++||+ ++|.|+|+++++++.....      ...++........|+.+...++++.+++
T Consensus       180 --g~-~-~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~~~~~------~~~~~~~~~~~~~~t~~~~~~~a~~~al  248 (381)
T PRK02948        180 --GK-L-PIDVFEMGIDSLSVSAHKI-YGPKGVGAVYINPQVRWKP------VFPGTTHEKGFRPGTVNVPGIAAFLTAA  248 (381)
T ss_pred             --cc-c-ccCcccCCCCEEEecHHhc-CCCCcEEEEEEcCCCCCCC------cccCCCCCCCcCCCCccHHHHHHHHHHH
Confidence              21 2 4566677899999999997 7899999988875421100      0111111111234455555677777888


Q ss_pred             HHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          402 MSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +.+. ++.++..++..++++++.+.|+++
T Consensus       249 ~~~~-~~~~~~~~~~~~~~~~l~~~L~~~  276 (381)
T PRK02948        249 ENIL-KNMQEESLRFKELRSYFLEQIQTL  276 (381)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7653 567888999999999999999887

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.94  E-value=2.2e-24  Score=229.80  Aligned_cols=309  Identities=17%  Similarity=0.161  Sum_probs=225.7

Q ss_pred             CCCCCC--CCCCc-HHHHHHHHHHhCCCCCCC--CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHHH
Q 013675           99 WWTELP--RAGLG-VGVIEKLKEEKGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVARF  172 (438)
Q Consensus        99 ~~~~lP--~~g~~-~~i~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~~  172 (438)
                      .+...|  .++.| .|++++++++..++....  ..+.|.+.+....   ....+-.....|...+|+++ +.+++..++
T Consensus       468 ~~~~~p~f~~~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~---~~~~~p~s~~eF~t~hPyqp~e~sQG~lq~  544 (954)
T PRK12566        468 AYLQHPVFNAHHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNA---TSEMIPITWPEFAQLHPFAPREQAEGYRAM  544 (954)
T ss_pred             ccccCcccccCCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCc---HHhhhcccchhhhcCCCCCchhhhcCHHHH
Confidence            334455  46789 999999999966655433  3566665554444   33333334455667799998 999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ..++.+|+++++|++...       +.-.+|+.+.+.++++.|.+... +|- .+++|+++...|.+....+...|++++
T Consensus       545 i~elq~~l~eLtGmd~~S-------l~p~sGA~gE~A~Lmair~yh~~-~Ge~~r~~vLIp~saHgtNpasa~~~GieVv  616 (954)
T PRK12566        545 IDELEAWLCAITGFDAIC-------MQPNSGAQGEYAGLLAIRRYHRS-RGQSQRDICLIPSSAHGTNPASAQMAGMRVV  616 (954)
T ss_pred             HHHHHHHHHHHHCCCeEe-------ecCCchHHHHHHHHHHHHHHHHh-cCCCCCCEEEecccccccCHHHHHHCCCEEE
Confidence            999999999999998642       45558888888888888865543 343 367899999999887777888999999


Q ss_pred             EeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          252 RVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      .||+|++|.+|+++|+++++   +++++|++++|++..+..+|+++|+++||++|+++++|+++.-...           
T Consensus       617 ~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~-----------  685 (954)
T PRK12566        617 IVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQV-----------  685 (954)
T ss_pred             EeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhcc-----------
Confidence            99999999999999999997   6899999999998666667799999999999999999999742111           


Q ss_pred             CCc-cCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCcc-CCCCccCCCC------CchHHHHHHH
Q 013675          329 PFD-FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY-VSPTVAGSRP------GGLIAGAWAA  400 (438)
Q Consensus       329 ~~~-~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~-~~~~~~gsr~------~~~ia~~~aa  400 (438)
                      .++ ....|+|++++++|||+++|.|.|...++.=..++......+.|++-.. ....-.|+.+      +..+...|+-
T Consensus       686 ~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Y  765 (954)
T PRK12566        686 GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMY  765 (954)
T ss_pred             CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHH
Confidence            122 3678999999999999888888777655531222222223333443110 0000012221      1124466677


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++.+|.+ +.+..+....+++|++++|++.
T Consensus       766 i~~lG~e-Lk~aa~~ailnAnYla~rL~~~  794 (954)
T PRK12566        766 IAMMGPQ-LADASEVAILSANYLANQLGGA  794 (954)
T ss_pred             HHHHCHH-HHHHHHHHHHHHHHHHHHhHhh
Confidence            7778998 8888888999999999999764

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.93  E-value=2.6e-24  Score=213.37  Aligned_cols=321  Identities=18%  Similarity=0.232  Sum_probs=198.0

Q ss_pred             hhhHHHHHHHHhhhhhc-cccccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHH
Q 013675           73 VNKYIEAEKQKVVDKMQ-SGVKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLIN  149 (438)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  149 (438)
                      +++|++....+.+++++ ..++++ +......||+. +| .|++++++++..++....++..++.|.+..|     ..+.
T Consensus        11 ~~~ML~~iG~~sieeL~~~~IP~~i~~~~~~~lp~~-~sE~e~~r~~~~la~kN~~~~~fiG~G~y~~~~P-----~~i~   84 (429)
T PF02347_consen   11 IQEMLDAIGVKSIEELFDSDIPEEIRLKKPLNLPEP-LSEYELLRHLERLASKNKSYTSFIGAGSYTHYVP-----AVID   84 (429)
T ss_dssp             HHHHHHHCT-SSTGGGG-TTS-GGG-SS-----------HHHHHHHHHHHHTTS--TTS---CTTT----------HHHH
T ss_pred             HHHHHHhcCCCCHHHHhhhhCCHhhcCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCCCccccccccCceeC-----hhhc
Confidence            45667777777889998 666654 34556788876 78 9999999999777666557776666665544     3333


Q ss_pred             H-HH---HHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675          150 E-AC---SMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT  225 (438)
Q Consensus       150 ~-~~---~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~  225 (438)
                      + .+   +.+...+|++++.++|..++..+.+.+++++.|+|..+    .  .+..|+|.+-..++++.|...+  +   
T Consensus        85 ~~i~~~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdvaN----a--Slyd~atA~aEa~~ma~r~~~~--~---  153 (429)
T PF02347_consen   85 RNILSRPEFYTAYTPYQPEISQGRLQALFEYQSMICELTGMDVAN----A--SLYDGATAAAEAMLMAVRATKR--K---  153 (429)
T ss_dssp             H-HHCCHHCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSEE-----S--EBSSCCHHHHHHHHHHHHHHTT------
T ss_pred             CccccChhhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCccC----C--CCCChhHHHHHHHHHHHHhccc--C---
Confidence            3 22   22345689999999999999999999999999999765    3  6788888777777666664321  1   


Q ss_pred             CCeEEecCCCcCcHHHHHhh----cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH
Q 013675          226 RPEMIIPVSAHSAYDKAAQY----FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS  301 (438)
Q Consensus       226 ~~~Viv~~~~h~s~~~a~~~----~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~  301 (438)
                      +.+|++|...|+....+++.    .|++++.+|.++++..|        ++++.+|++++||+ .|.++|+++|++++|+
T Consensus       154 ~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~  224 (429)
T PF02347_consen  154 RNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DDDTAAVMVQNPNT-FGVFEDIKEIADIAHA  224 (429)
T ss_dssp             --EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------STTEEEEEEESS-T-TSB--THHHHHHHHHH
T ss_pred             CcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------ccCeEEEEeecCCC-CceEeeHHHHHHHHHH
Confidence            26899999999999886655    48999999998877777        78899999999987 9999999999999999


Q ss_pred             cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC----CCCCCCcEEEEEecccccccchh---cccc
Q 013675          302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY----GLAPKGTSVVLYRNREIRKHQFV---AVTE  374 (438)
Q Consensus       302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~----~~~p~g~g~l~~r~~~~~~~~~~---~~~~  374 (438)
                      +|..+++ ++--       -+++.   --.....|+|+++.+.+.+    ++|++++|++.++++-.+...-+   ...|
T Consensus       225 ~gal~~~-~ad~-------~aL~~---l~~Pge~GADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D  293 (429)
T PF02347_consen  225 AGALVIV-GADP-------NALGG---LKSPGEYGADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKD  293 (429)
T ss_dssp             TT-EEEE-CGGC-------CGCCT---C--GGGGT-SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEB
T ss_pred             cCCEEEE-ecCH-------HHHhC---cCChhhcCccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceeccccc
Confidence            9999887 5521       11221   1123556899997664444    36778899999998744432211   1112


Q ss_pred             cCCCccC-----CCCccCCCCC---------chH-HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          375 WSGGLYV-----SPTVAGSRPG---------GLI-AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       375 ~~g~~~~-----~~~~~gsr~~---------~~i-a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      -.|....     +....-+|..         +++ ...++-+..+|.+|++++.+++..+|+|+++.|+++
T Consensus       294 ~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  294 ADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             CCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2221100     1111111211         121 123334445999999999999999999999999987

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.93  E-value=1.9e-24  Score=218.64  Aligned_cols=246  Identities=18%  Similarity=0.126  Sum_probs=189.7

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----  240 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----  240 (438)
                      ...+..++.+++++.+++++|.++++    +  ++++|+|+++..++.++...  .++|   ++|+++.+.|++..    
T Consensus        54 ~~~~~~~~~~~l~~~ia~~~~~~~~~----v--~~~~~~t~~l~~~~~~~~~~--~~~g---d~vl~~~~~~~s~~~~~~  122 (397)
T TIGR01976        54 SSRRADQVVDDAREAVADLLNADPPE----V--VFGANATSLTFLLSRAISRR--WGPG---DEVIVTRLDHEANISPWL  122 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCe----E--EEeCCHHHHHHHHHHHHHhc--CCCC---CEEEEcCCchHhHHHHHH
Confidence            34556677889999999999998765    6  89999999998877776321  1356   89999999998753    


Q ss_pred             HHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          241 KAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ..++..|++++.+++++ ++.+|+++++++++++|++|++++++|++|.+.|+++|+++|+++|+++++|+++....   
T Consensus       123 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~---  199 (397)
T TIGR01976       123 QAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH---  199 (397)
T ss_pred             HHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc---
Confidence            56677899999999986 78999999999999999999999999999999999999999999999999999974221   


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                             . ++++...++|++++++||| ++|. +|+++.+++ ...........|...........|+++...++++.+
T Consensus       200 -------~-~~~~~~~~~d~~~~s~~K~-~g~~-~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~  268 (397)
T TIGR01976       200 -------G-LIDVQATGADFLTCSAYKF-FGPH-MGILWGRPE-LLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVA  268 (397)
T ss_pred             -------c-CCCHHHcCCCEEEEechhh-cCCc-eEEEEEcHH-HHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHH
Confidence                   1 3556667899999999999 5665 898887754 332221112223221111223357777777888888


Q ss_pred             HHHHHcHHH--------------HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          400 ALMSLGQEG--------------YLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       400 al~~~g~~g--------------~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +++.+...|              ++++.++..++++++.+.|++++++++
T Consensus       269 al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~  318 (397)
T TIGR01976       269 AVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTL  318 (397)
T ss_pred             HHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            888775443              677788899999999999998877664

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.93  E-value=1.8e-24  Score=215.48  Aligned_cols=245  Identities=15%  Similarity=0.143  Sum_probs=188.8

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a  242 (438)
                      .++...++.+++++.+++++|.++..     ..++|+|||+++.+++.++.     .+|   ++|+++...|++  +...
T Consensus        26 ~~~~~~~~~~~~~~~la~~~g~~~~~-----~~~~~~~~t~al~~~~~~~~-----~~g---~~vl~~~~~~~~~~~~~~   92 (356)
T cd06451          26 RSPEFLALMDEILEGLRYVFQTENGL-----TFLLSGSGTGAMEAALSNLL-----EPG---DKVLVGVNGVFGDRWADM   92 (356)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCC-----EEEEecCcHHHHHHHHHHhC-----CCC---CEEEEecCCchhHHHHHH
Confidence            35567777889999999999996544     33789999999999998875     367   899999888887  5678


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      ++..|++++.+|+++++.+|++++++.+++ +|++|++++++|++|.+.|+++|+++|+++|+++++|++++.+..    
T Consensus        93 ~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~----  168 (356)
T cd06451          93 AERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGE----  168 (356)
T ss_pred             HHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCc----
Confidence            888999999999988889999999999987 899999999999999999999999999999999999998752222    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh--cccccCCC-----ccCC--CCccCCCCCc
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV--AVTEWSGG-----LYVS--PTVAGSRPGG  392 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~--~~~~~~g~-----~~~~--~~~~gsr~~~  392 (438)
                             +++....++|++++++|||+++|.|+|+++.+++.. .....  ....|...     .+..  ....++.+-.
T Consensus       169 -------~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  240 (356)
T cd06451         169 -------PFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERAL-ERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVN  240 (356)
T ss_pred             -------cccccccCccEEEecCchhccCCCCcceeEECHHHH-HHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHH
Confidence                   244445578999999999999999999988876532 22111  11111100     0000  0111222233


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .++++.++++.+...|+++..++..++++++.+.|.++ |+++
T Consensus       241 ~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  282 (356)
T cd06451         241 LLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKL  282 (356)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence            35677889988888899999999999999999999876 5543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.93  E-value=1.7e-24  Score=219.12  Aligned_cols=246  Identities=14%  Similarity=0.095  Sum_probs=193.4

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~a  242 (438)
                      .++.+.++.+++++++++++|.+.++     .-+++++||+++..++....     .+|   |+|+++...|++.  ...
T Consensus        36 ~~~~~~~~~~~~~~~l~~~~g~~~~~-----~vi~~~~gt~a~~~a~~~~~-----~~G---d~Vlv~~~~~~~~~~~~~  102 (401)
T PLN02409         36 RSPAFPALTKELLEDVKYIFKTKSGT-----PFIFPTTGTGAWESALTNTL-----SPG---DKVVSFRIGQFSLLWIDQ  102 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCC-----EEEEeCCcHHHHHHHHHhcC-----CCC---CEEEEeCCCchhHHHHHH
Confidence            36788889999999999999997654     23889999999988887754     367   8999999998765  577


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHH--HHHcCCeEEEeccccchh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGEL--ALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~l--a~~~~i~lhVD~a~gg~~  316 (438)
                      ++.+|++++.++.+.+..+|++++++++++    +|++|++++++|+||.+.|+++|+++  |+++|++++||++++.+.
T Consensus       103 ~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~  182 (401)
T PLN02409        103 MQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGA  182 (401)
T ss_pred             HHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCC
Confidence            888999999999987666899999999986    78999999999999999999999999  999999999999975322


Q ss_pred             hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch----hcccccCCCc-cC-C-CCccCCC
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF----VAVTEWSGGL-YV-S-PTVAGSR  389 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~----~~~~~~~g~~-~~-~-~~~~gsr  389 (438)
                                . +++....++|++++++|||+++|+|+|+++++++.+.+..-    ....+|.... +. . ....++.
T Consensus       183 ----------~-~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp  251 (401)
T PLN02409        183 ----------L-DFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTP  251 (401)
T ss_pred             ----------c-cccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCc
Confidence                      2 57777889999999999999999999999887653322110    0111111000 00 0 0012334


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +...++++..+++.+...|++++.++..++++++++.|+++ |+++
T Consensus       252 ~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~  296 (401)
T PLN02409        252 SIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKL  296 (401)
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence            44457788899998888999999999999999999999876 6654

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.93  E-value=9.6e-24  Score=213.49  Aligned_cols=294  Identities=17%  Similarity=0.145  Sum_probs=198.1

Q ss_pred             HHHHHHHHHhCCCCCCC-C-CceeeeecCCCCcchHHHHHHHHHHHh---hccCCCCcccchhHHHHHHHHHHHHHHHhC
Q 013675          111 GVIEKLKEEKGKDVVWQ-G-KCSGTVYIGGSEAEGHFSLINEACSMF---AHTNPLHLDIFQSVARFEAEVIAMTAALLG  185 (438)
Q Consensus       111 ~i~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g  185 (438)
                      ||++++.++..++.... + -..+...+++..    +..+.++....   ...+++++..+.+..++.+++++++++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g   78 (398)
T cd00613           3 EVLRHLKRLASKNKALDQSMSFLGSGTYKHNP----PAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTG   78 (398)
T ss_pred             HHHHHHHHHHhcCcCcccCcccccccccCCcC----cHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHC
Confidence            78888888744333222 1 112222233443    23333333222   112233333378888999999999999999


Q ss_pred             CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC----cEEEEeeCCCCCcc
Q 013675          186 NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN----IKLWRVPVDKEFRA  261 (438)
Q Consensus       186 ~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G----i~v~~v~~~~~~~~  261 (438)
                      ++.++    +  +++.+|+++...++.+++..  ..+|   ++|+++.+.|+++..++...|    ++++.+|+++++.+
T Consensus        79 ~~~~~----v--~~~~~g~~~~~~~~~~~~~~--~~~g---d~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  147 (398)
T cd00613          79 MDVAN----A--SLQDEATAAAEAAGLAAIRA--YHKR---NKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTV  147 (398)
T ss_pred             CCccc----e--eccCchHHHHHHHHHHHHhc--ccCC---CEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCc
Confidence            97655    4  56666665555555554421  1136   899999999999999888887    99999999877889


Q ss_pred             CHHHHHHhhccCcEEEEEecCCCCCccccCH-HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEE
Q 013675          262 DVKAIKKYINRNTVLIVGSAPGFPHGIIDPI-QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSI  340 (438)
Q Consensus       262 d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi-~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsi  340 (438)
                      |+++++++++++|++|++++++ ++|.+.|+ ++|+++|+++|+++++|++++.+..           ..+....++|++
T Consensus       148 d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~-----------~~~~~~~~~d~~  215 (398)
T cd00613         148 DLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTG-----------LKPPGEYGADIV  215 (398)
T ss_pred             CHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccC-----------CCChHHcCCCEE
Confidence            9999999999999999999986 79999885 9999999999999999998754332           123344579999


Q ss_pred             EeCCCCCCCCC-----CCcEEEEEecccccccchhcccccCCCc------cC--CC------CccCCC-----CCchHHH
Q 013675          341 SVDVHKYGLAP-----KGTSVVLYRNREIRKHQFVAVTEWSGGL------YV--SP------TVAGSR-----PGGLIAG  396 (438)
Q Consensus       341 s~s~hK~~~~p-----~g~g~l~~r~~~~~~~~~~~~~~~~g~~------~~--~~------~~~gsr-----~~~~ia~  396 (438)
                      +.++|||+ .|     +++|+++.+++ +..........|....      +.  .+      ...|+.     .....+.
T Consensus       216 ~~s~~K~~-~p~g~Ggp~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~  293 (398)
T cd00613         216 VGNLQKTG-VPHGGGGPGAGFFAVKKE-LVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALM  293 (398)
T ss_pred             EeeccccC-CCCCCCCCceeEEEEhhh-hHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHH
Confidence            99999997 65     55778777643 3322111111111100      00  00      001111     1123446


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      +++++..++.+|++++.++..++++++.++|+++++.
T Consensus       294 a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~  330 (398)
T cd00613         294 AAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGV  330 (398)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            6777888899999999999999999999999987654

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.93  E-value=9.1e-24  Score=212.88  Aligned_cols=232  Identities=16%  Similarity=0.124  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      ....++++.+++++|.++      +  .+|+|+|+++..++.++.     .+|   ++|+++...|++...+++..|+++
T Consensus        63 ~~~~~l~~~lA~~~g~~~------~--~~~~g~t~a~~~al~~l~-----~~g---d~Vlv~~~~h~s~~~~~~~~G~~~  126 (387)
T PRK09331         63 PPIADFHEDLAEFLGMDE------A--RVTHGAREGKFAVMHSLC-----KKG---DYVVLDGLAHYTSYVAAERAGLNV  126 (387)
T ss_pred             hHHHHHHHHHHHHhCCCc------E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEECCCchHHHHHHHHHcCCEE
Confidence            346677778999999863      3  789999999999998875     367   899999999999999999999999


Q ss_pred             EEeeC--CCCCccCHHHHHHhhcc-------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          251 WRVPV--DKEFRADVKAIKKYINR-------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       251 ~~v~~--~~~~~~d~~~Le~~I~~-------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      +.+|+  ++++.+|++++++++++       ++++|+++++++++|.+.|+++|+++|+++|+++|||++++.+.+    
T Consensus       127 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~----  202 (387)
T PRK09331        127 REVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRM----  202 (387)
T ss_pred             EEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCc----
Confidence            99999  66888999999999963       689999999999999999999999999999999999999875444    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccC-CCCCchHHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG-SRPGGLIAGAWAA  400 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g-sr~~~~ia~~~aa  400 (438)
                             +++....|+|+++.++||++.+|.|+|+++.+++ ...........+.-.   .....| +.+.+.+++++++
T Consensus       203 -------~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~-~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~aa  271 (387)
T PRK09331        203 -------PVDGKKLGADFIVGSGHKSMAASAPSGVLATTEE-YADKVFRTSRKFGVK---EVELLGCTLRGAPLVTLMAS  271 (387)
T ss_pred             -------CCCHHHcCCCEEEeeCcccccCCCCEEEEEECHH-HHhhcccccCCCccc---ceeeeceecCchHHHHHHHH
Confidence                   3455567899999999999889999999887654 322211111111000   000011 2222334456666


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +..+-..  .+..++..++++++++.|+++||+++
T Consensus       272 l~~~~~~--~~~~~~~~~~~~~l~~~L~~l~g~~~  304 (387)
T PRK09331        272 FPHVVER--VKRWDEEVKKARWFVDELEKIEGFKQ  304 (387)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            6544222  24556678899999999999988765

>TIGR01814 kynureninase kynureninase

Probab=99.92  E-value=1.8e-23  Score=212.17  Aligned_cols=234  Identities=16%  Similarity=0.145  Sum_probs=174.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYF  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~  246 (438)
                      .+.++..+ + +++|+++++    +  ++|+|+|+++..++.++..     +|-.+++|+++..+|++..    ..++..
T Consensus        71 ~~~~~~~~-~-~l~g~~~~~----v--~~~~~~t~~l~~~~~~~~~-----~~~~~~~i~~~~~~~~s~~~~~~~~~~~~  137 (406)
T TIGR01814        71 TLDESLLK-L-RLVGAKEDE----V--VVMNTLTINLHLLLASFYK-----PTPKRYKILLEAKAFPSDHYAIESQLQLH  137 (406)
T ss_pred             hhhhhhcc-c-cccCCCCCc----E--EEeCCchHHHHHHHHHhcC-----CcCCccEEEecCCCCChHHHHHHHHHHhc
Confidence            34444433 4 899998776    6  9999999999999888621     2211247888889999843    345667


Q ss_pred             CcEE----EEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          247 NIKL----WRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       247 Gi~v----~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      |+++    +.++.++++.+|++++++.++   ++|++|+++++++.+|.+.|+++|+++|+++|++++||++++.+.+  
T Consensus       138 g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~--  215 (406)
T TIGR01814       138 GLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNV--  215 (406)
T ss_pred             CCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCc--
Confidence            8887    567766678899999999884   7899999999999999999999999999999999999999765443  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCcc-------------CCCCcc
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY-------------VSPTVA  386 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~-------------~~~~~~  386 (438)
                               +++....|+|++++++|||+++|+| |+++++.+..... ......|.+...             ......
T Consensus       216 ---------~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  284 (406)
T TIGR01814       216 ---------PLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTE-RPRLAGWWGHARPTRFKMDNTLGLIPCGFRI  284 (406)
T ss_pred             ---------ccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhc-CCCCCcccCCCCccccccccccCCCccceee
Confidence                     4777788999999999999888888 6666655433221 111122322110             000112


Q ss_pred             CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      |+.+-..++++.++++.+...|++++.++...+++++++.|+++
T Consensus       285 GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  328 (406)
T TIGR01814       285 SNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKAR  328 (406)
T ss_pred             CCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            44455567788889998888899999999999999999999875

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.92  E-value=3e-23  Score=207.29  Aligned_cols=230  Identities=14%  Similarity=0.087  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++++|.  ++    +  ++|+|+|+++..++.++.     .+|   ++|+++..+|++...+++..|++++.
T Consensus        46 ~~~l~~~la~~~g~--~~----i--~~~~g~t~al~~~l~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~  109 (361)
T cd06452          46 IKDFHHDLAEFLGM--DE----A--RVTPGAREGKFAVMHSLC-----EKG---DWVVVDGLAHYTSYVAAERAGLNVRE  109 (361)
T ss_pred             HHHHHHHHHHHcCC--ce----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEcCCcchHHHHHHHhcCCEEEE
Confidence            44566679999998  23    4  899999999999998875     367   89999999999998899999999999


Q ss_pred             eeCCCC--CccCHHHHHHhhc-------cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          253 VPVDKE--FRADVKAIKKYIN-------RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       253 v~~~~~--~~~d~~~Le~~I~-------~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      +|++++  +.+|+++++++++       +++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+..      
T Consensus       110 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~------  183 (361)
T cd06452         110 VPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRM------  183 (361)
T ss_pred             EecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCc------
Confidence            999864  4899999999986       3789999999999999999999999999999999999999874333      


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCC-ccCCCCCchHHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT-VAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~-~~gsr~~~~ia~~~aal~  402 (438)
                           +++....++|+++.++||++.+|.++|+++.+++ +.+........|...   ... ..++...+.++++++++.
T Consensus       184 -----~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~-~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~al~  254 (361)
T cd06452         184 -----PVSGKELGADFIVGSGHKSMAASAPIGVLATTEE-WADIVFRTSQMFKIK---EVELLGCTLRGAPLVTLMASFP  254 (361)
T ss_pred             -----CCCHHHcCCCEEEecCCccccCCCCeEEEEECHH-HHHHHhccccccccc---eeeeeccccCchHHHHHHHHHH
Confidence                 2444456789999999999878888998887643 333221111111110   011 112222233445666665


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+ .+. .+..++..+.++++++.|+++||+++
T Consensus       255 ~~-~~~-~~~~~~~~~~~~~l~~~L~~l~g~~v  285 (361)
T cd06452         255 HV-KER-VKRWDEEVEKARWFVAELEKIEGIKQ  285 (361)
T ss_pred             HH-HHH-HHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            43 222 34455556678999999999988765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.92  E-value=8.6e-23  Score=222.61  Aligned_cols=325  Identities=14%  Similarity=0.109  Sum_probs=221.1

Q ss_pred             hHHHHHHHHhhhhhccc-cccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHHH
Q 013675           75 KYIEAEKQKVVDKMQSG-VKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEA  151 (438)
Q Consensus        75 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  151 (438)
                      +|++....+.++++..+ +++. +...+..||+ +.| .|++++++++..++..+..+...+.|....|+.+...++. .
T Consensus        24 ~ml~~~g~~s~~~l~~~~iP~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~-~  101 (954)
T PRK05367         24 AMLAALGADSLDALIDQAVPASIRLAEPLDLPA-ALSEAEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILE-N  101 (954)
T ss_pred             HHHHhcCCCCHHHHhhhhCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHh-C
Confidence            44444445666777776 4433 3445677875 467 9999999999766665656666666666555211122222 1


Q ss_pred             HHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Q 013675          152 CSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII  231 (438)
Q Consensus       152 ~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv  231 (438)
                      -..+...+|++++.++|..+...+++.++++|+|++..+    +  .++.++|.+...++++.+..  ++++   ++|++
T Consensus       102 ~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~an----a--Sl~d~aTAa~ea~~~a~~~~--~~~~---~~vlv  170 (954)
T PRK05367        102 PAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIAN----A--SLLDEATAAAEAMALAKRVS--KSKS---NRFFV  170 (954)
T ss_pred             cchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhh----c--cccccHHHHHHHHHHhhhhc--cCCC---CEEEE
Confidence            122556789999999999999999999999999999887    5  89999999999777776531  1113   79999


Q ss_pred             cCCCcCcHHHH----HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEE
Q 013675          232 PVSAHSAYDKA----AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH  307 (438)
Q Consensus       232 ~~~~h~s~~~a----~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lh  307 (438)
                      ++..|++...+    ++..|++++.+|.+.+    .+      ++++.++++..|+ .+|.+.|+++|+++||++|++++
T Consensus       171 ~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d----~~------~~~~~~vlvq~p~-~~G~i~d~~~i~~~ah~~Gal~~  239 (954)
T PRK05367        171 DDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA----LD------HDDVFGVLLQYPG-TSGEVRDYTALIAAAHARGALVA  239 (954)
T ss_pred             cCccCHHHHHHHHHHHHhCCCEEEEecCccC----CC------cccEEEEEEecCC-CCeeeccHHHHHHHHHHcCCEEE
Confidence            99999997654    4567999999998642    11      3467777777765 49999999999999999999999


Q ss_pred             EeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccchhc---ccccCCCc-
Q 013675          308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQFVA---VTEWSGGL-  379 (438)
Q Consensus       308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~~~~---~~~~~g~~-  379 (438)
                      ||+.+.+..+           ..+....|+|+++.++||||    +|++++|++.+|++-.+...-..   ..++.|.. 
T Consensus       240 vda~~~Al~~-----------l~~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~  308 (954)
T PRK05367        240 VAADLLALTL-----------LTPPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPA  308 (954)
T ss_pred             EEehhhhccC-----------CCChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcc
Confidence            9996532222           12457789999999999993    34446999999875333221111   11222221 


Q ss_pred             cC----CCCccCCCCCc-----h---HHHHHH--HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          380 YV----SPTVAGSRPGG-----L---IAGAWA--ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       380 ~~----~~~~~gsr~~~-----~---ia~~~a--al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      |.    .....-+|..+     .   +.++.+  .+.++|.+|++++.+++..++++++++|++ +|+++
T Consensus       309 ~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~  377 (954)
T PRK05367        309 LRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEV  377 (954)
T ss_pred             cccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCccc
Confidence            10    00011112111     1   111222  235689999999999999999999999977 57664

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.91  E-value=4.8e-23  Score=205.94  Aligned_cols=243  Identities=18%  Similarity=0.172  Sum_probs=182.0

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE-EecCCCcCc-HHHHH
Q 013675          167 QSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM-IIPVSAHSA-YDKAA  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V-iv~~~~h~s-~~~a~  243 (438)
                      +.+.+..+++++.+++++|++++ +   .+  ++|+|||+++..++.++..     +|   +++ +++...|.. +.+.+
T Consensus        31 ~~~~~~~~~~r~~la~l~~~~~~~~---~i--~~t~~~t~al~~~~~~l~~-----~~---~~vlv~~~~~~~~~~~~~a   97 (363)
T TIGR02326        31 SDYNIVVEQIRQQLLALATAEEGYT---SV--LLQGSGTFAVEAVIGSAVP-----KD---GKLLVVINGAYGARIVQIA   97 (363)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCce---EE--EEcCCCHHHHHHHHHhcCC-----CC---CeEEEEeCChhhHHHHHHH
Confidence            45667778899999999999764 2   14  8999999999999988752     44   454 445555655 35778


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhcc--CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      +.+|++++.+|+++++.+|++++++++++  +++++.+++++|+||.+.|+++|+++|+++|++++||++++.+..    
T Consensus        98 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~----  173 (363)
T TIGR02326        98 EYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGI----  173 (363)
T ss_pred             HHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCc----
Confidence            89999999999988889999999999975  457788999999999999999999999999999999998653222    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc-------ccCCCccCCCCccCCCCCchH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT-------EWSGGLYVSPTVAGSRPGGLI  394 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~-------~~~g~~~~~~~~~gsr~~~~i  394 (438)
                             +++....++|+++.++|||+++|+|+|+++++++.+.+.......       .|....+.......+.+...+
T Consensus       174 -------~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~  246 (363)
T TIGR02326       174 -------PIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVV  246 (363)
T ss_pred             -------ccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHH
Confidence                   466677789999999999999999999999876543221100000       010000000011123344556


Q ss_pred             HHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          395 AGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       395 a~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .++.++++.+..+ |++++.++..++++++.+.|+++ |++
T Consensus       247 ~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~  286 (363)
T TIGR02326       247 HAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFE  286 (363)
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence            7788888887666 48889999999999999999876 544

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.91  E-value=2.1e-22  Score=193.97  Aligned_cols=305  Identities=16%  Similarity=0.183  Sum_probs=233.5

Q ss_pred             CCCCCCCc-HHHHHHHHHHhCCCCCCC--CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHHHHHHHH
Q 013675          102 ELPRAGLG-VGVIEKLKEEKGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVARFEAEVI  177 (438)
Q Consensus       102 ~lP~~g~~-~~i~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~~e~~~~  177 (438)
                      ..|....| .|+++++.++.+++...+  -...|.+.+..++   -.+...-.+..|.+-.|+.+ +..++..++..++.
T Consensus        39 ~~~~Pe~SE~e~~Rh~~rLs~kn~avd~~m~PLGSCTMK~Np---~~e~~~~~~p~f~~iHP~~pe~~vqG~l~li~~Lq  115 (496)
T COG1003          39 YPPLPEHSETEMVRHYTRLSQKDLAVDRGMIPLGSCTMKLNP---KAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQ  115 (496)
T ss_pred             CCCCccccHHHHHHHHHHHHhcccccccCccCCcccccccCc---hhhcccccccchhhcCCCCChHHHHHHHHHHHHHH
Confidence            33444467 999999999966665554  4567888887777   45555566677888889887 46799999999999


Q ss_pred             HHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC
Q 013675          178 AMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK  257 (438)
Q Consensus       178 ~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~  257 (438)
                      +|++++.|+|.-.       +-...|+++-.+.++++|.+...+....|+.+++|+++|......+.+.|++|+.|++++
T Consensus       116 ~~L~~ITG~Davs-------LQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~  188 (496)
T COG1003         116 EWLKEITGMDAVS-------LQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDE  188 (496)
T ss_pred             HHHHHhcCCceee-------ccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCC
Confidence            9999999998632       567888999999999998877654333678999999999999999999999999999999


Q ss_pred             CCccCHHHHHHhhccCcEEEEEecCCCCCcccc-CHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC
Q 013675          258 EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID-PIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG  336 (438)
Q Consensus       258 ~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id-di~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g  336 (438)
                      +|.+|+++|++++++++.++.+|+||| +|.++ +|.+|+++.|++|..+..|||---      .-+|.    .+....|
T Consensus       189 ~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlN------A~vG~----~rPGd~G  257 (496)
T COG1003         189 NGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLN------AIVGL----ARPGDMG  257 (496)
T ss_pred             CCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchh------hhhcc----ccccccc
Confidence            999999999999999999999999988 89985 699999999999999999999521      12332    4456778


Q ss_pred             ccEEEeCCCCCCCCC-----CCcEEEEEecccccccchhcccc-cCCCccC----CCCccCC---C--CCchHHHHHHHH
Q 013675          337 VTSISVDVHKYGLAP-----KGTSVVLYRNREIRKHQFVAVTE-WSGGLYV----SPTVAGS---R--PGGLIAGAWAAL  401 (438)
Q Consensus       337 vdsis~s~hK~~~~p-----~g~g~l~~r~~~~~~~~~~~~~~-~~g~~~~----~~~~~gs---r--~~~~ia~~~aal  401 (438)
                      +|++-++.||.++.|     +|.|-+.++. .+....-... . ..++.|.    .....|.   -  +.....-.|+-+
T Consensus       258 ~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~-~L~pfLP~p~-~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI  335 (496)
T COG1003         258 FDVVHLNLHKTFCIPHGGGGPGAGPVGVKA-HLAPFLPGPV-VYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYI  335 (496)
T ss_pred             cceEEeecccccccCCCCCCCCCCceehHh-hccccCCCCc-ccCCCccccccCCCCccceeeccccCcchHHHHHHHHH
Confidence            999999999996544     5566677763 2322111000 0 1111110    1101110   0  113455789999


Q ss_pred             HHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          402 MSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      +.+|.+|+++..+...-+|.|++++|+.
T Consensus       336 ~~mG~~GL~~ase~AvLNANYia~rL~~  363 (496)
T COG1003         336 RMMGADGLKQASEVAVLNANYIARRLKG  363 (496)
T ss_pred             HHHhHHHHHHHHHHHHHhHHHHHHHhhh
Confidence            9999999999999999999999999985

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.91  E-value=1.3e-22  Score=198.38  Aligned_cols=247  Identities=17%  Similarity=0.221  Sum_probs=204.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDK  241 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~  241 (438)
                      ..+|.+..+..++.+.+..+++.+...     +-+++++||.++..++.++..     +|   ++|++....-++  |.+
T Consensus        31 h~s~~F~~~~~~~~~~L~~v~~t~~~~-----~~ll~gsGt~amEAav~sl~~-----pg---dkVLv~~nG~FG~R~~~   97 (383)
T COG0075          31 HRSPDFVGIMKEVLEKLRKVFGTENGD-----VVLLSGSGTLAMEAAVASLVE-----PG---DKVLVVVNGKFGERFAE   97 (383)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCc-----EEEEcCCcHHHHHHHHHhccC-----CC---CeEEEEeCChHHHHHHH
Confidence            568889999999999999999998544     338889999999999999874     77   899888777655  889


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhcc--CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      .++.+|.+++.+...+.-.+|++++++++++  +.++|.++|..|+||+..|+++|+++|++||..++||++.+      
T Consensus        98 ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS------  171 (383)
T COG0075          98 IAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSS------  171 (383)
T ss_pred             HHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEeccc------
Confidence            9999999999999988888999999999985  46799999999999999999999999999999999999954      


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc-------cccCCCccCCCCccCCCCCc
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV-------TEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~-------~~~~g~~~~~~~~~gsr~~~  392 (438)
                         +|. . +++...+|+|.+..+++|++.+|+|.|++.++++.+....-...       ..|..........+.+.+-.
T Consensus       172 ---~Gg-~-~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~  246 (383)
T COG0075         172 ---LGG-E-PLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVN  246 (383)
T ss_pred             ---CCC-c-ccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHH
Confidence               332 2 68889999999999999999999999999999876543221111       11111000013445566777


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+.++..+++.+-.+|++.+.++...+++++++.++++ |+++
T Consensus       247 ~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~  288 (383)
T COG0075         247 LIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLEL  288 (383)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence            89999999999999999999999999999999999987 6654

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.91  E-value=3.1e-22  Score=192.96  Aligned_cols=332  Identities=16%  Similarity=0.147  Sum_probs=231.4

Q ss_pred             chhhHHHHHHHHhhhhhcc-ccccc-cCCCCCCC--CCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHH
Q 013675           72 GVNKYIEAEKQKVVDKMQS-GVKSK-REGWWTEL--PRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFS  146 (438)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l--P~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (438)
                      ..++|++....+.+++++. .+++. +.. ...+  +.++.+ .+++++++++..++..+.+++..++|....|+.+...
T Consensus        18 d~~~ML~~iG~~Sld~L~~~~IP~~Ir~~-~~~~~~~~~~~sE~e~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rn   96 (450)
T COG0403          18 DQQEMLAAIGVSSLDELFSQDIPPSIRKK-LDTLLPLPKPLSEYEALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRN   96 (450)
T ss_pred             HHHHHHHHcCCCCHHHHhhccCCHHHHhc-ccccCCCCCCCCHHHHHHHHHHHHhcCchhhhhccCcccCCcCcHHHHHH
Confidence            3556777777778888888 45433 222 2222  234568 9999999999777775556776666666665222212


Q ss_pred             HHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCC
Q 013675          147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR  226 (438)
Q Consensus       147 ~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~  226 (438)
                      ++. -=+.+..++|++++.++|..+...+.+.++++|.|++..+    .  .+..++|.+-..++++.|....     ++
T Consensus        97 ile-~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VAN----A--Sm~DeaTAaAEAm~ma~r~~k~-----k~  164 (450)
T COG0403          97 ILE-NPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVAN----A--SMLDEATAAAEAMLMAKRVTKK-----KR  164 (450)
T ss_pred             hhc-CccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCccc----c--hhhhhHHHHHHHHHHHHHhhcC-----cC
Confidence            322 1122456789999999999999999999999999999886    3  7889999888888888775321     23


Q ss_pred             CeEEecCCCcCcHHHHHhhc----CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCc-cccCHHHHHHHHHH
Q 013675          227 PEMIIPVSAHSAYDKAAQYF----NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHG-IIDPIQELGELALS  301 (438)
Q Consensus       227 ~~Viv~~~~h~s~~~a~~~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG-~iddi~~I~~la~~  301 (438)
                      .+++++...|+....+.+.+    |++++.++.+     |.++++++.+.++.++++..|++ +| .+.|+.+|.+.+|+
T Consensus       165 ~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~~~~~~~gv~vQyP~~-~G~~~~d~~~l~~~~h~  238 (450)
T COG0403         165 NKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESADDGDVFGVLVQYPNT-FGIVEEDLRALIEAAHS  238 (450)
T ss_pred             ceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhccccCeEEEEEecCCC-CCccchhHHHHHHHHhh
Confidence            78999999999988877765    7888888776     89999999445899999999997 77 77789999999999


Q ss_pred             cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccch---hcccc
Q 013675          302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQF---VAVTE  374 (438)
Q Consensus       302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~~---~~~~~  374 (438)
                      +|..++|=.---+        ++.--|   ....|+|++..+++.+|    ||++.+|++.++++-.|+..=   -...|
T Consensus       239 ~~al~~v~aDpla--------L~LL~p---PGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D  307 (450)
T COG0403         239 AGALVIVAADPLA--------LGLLKP---PGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVD  307 (450)
T ss_pred             cCCEEEEEechhH--------hhccCC---ccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeec
Confidence            9998665332111        111012   35678999999999885    777779999999775544210   01111


Q ss_pred             cCCCccCCCCcc-----CCCCC------------chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC-Cccc
Q 013675          375 WSGGLYVSPTVA-----GSRPG------------GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP-MFLP  435 (438)
Q Consensus       375 ~~g~~~~~~~~~-----gsr~~------------~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~  435 (438)
                      -.|..-...+++     =+|.-            ++++++|+++  +|.+|++++.+++++++.+++++|+++. |+++
T Consensus       308 ~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~--hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~  384 (450)
T COG0403         308 AAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVY--HGPQGLKEIAERIHRLAAYLAAGLKEIGAGVEL  384 (450)
T ss_pred             CCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHhhcCCceEe
Confidence            111110000111     01211            2355666665  8999999999999999999999999764 4444

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.90  E-value=1.1e-21  Score=212.96  Aligned_cols=332  Identities=14%  Similarity=0.083  Sum_probs=221.0

Q ss_pred             hcCcch----hhHHHHHHHHhhhhhc-cccccccCCCCCCCCC--CCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCC
Q 013675           68 KLVPGV----NKYIEAEKQKVVDKMQ-SGVKSKREGWWTELPR--AGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGS  139 (438)
Q Consensus        68 ~~~p~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lP~--~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~  139 (438)
                      |++|..    ++|++....+.++++. ..+++.-....+.||+  .++| .|++++++++..++..+..+...+.|....
T Consensus        38 r~i~~~~~~~~~ML~~ig~~s~d~l~~~~iP~~i~~~~l~lp~~~~~~sE~e~~~~~~~la~kN~~~~~fiG~G~y~~~~  117 (993)
T PLN02414         38 RHNSATPEEQKAMAEYCGFDSLDALIDATVPKSIRLDSMKLSKYDEGLTESQMLEHMKSLASKNKVFKSYIGMGYYNTHV  117 (993)
T ss_pred             ccCCcCHHHHHHHHHhcCccCHHHHhhccCCHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccccccCCCCCCccC
Confidence            355543    3444444556677777 4444322222567882  5788 999999999966555444555555555545


Q ss_pred             CcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH
Q 013675          140 EAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR  219 (438)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~  219 (438)
                      ++. ..+-+.+....+...+|++++.+++..+...+++.++++|+|++.++    +  .++.++|.+...++++.+.   
T Consensus       118 P~~-v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~an----a--SL~d~aTAaaea~~~a~~~---  187 (993)
T PLN02414        118 PPV-ILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSN----A--SLLDEGTAAAEAMAMCNNI---  187 (993)
T ss_pred             CHH-HHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhh----E--eecCChHHHHHHHHHHHhc---
Confidence            422 22333344444566789999999999999999999999999999887    6  8999999999988877653   


Q ss_pred             HhcCCCCCeEEecCCCcCcHHHHHh----hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHH
Q 013675          220 NKRGITRPEMIIPVSAHSAYDKAAQ----YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQEL  295 (438)
Q Consensus       220 ~~~G~~~~~Viv~~~~h~s~~~a~~----~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I  295 (438)
                       .+| ++++|++++..|++...+++    ..|++++.+|.+..   |      ..++++..+++..|++ +|.+.|+++|
T Consensus       188 -~~g-~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~------~~~~~v~~vlvq~P~~-~G~v~dv~~I  255 (993)
T PLN02414        188 -LKG-KKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D------YSSGDVCGVLVQYPAT-DGEVLDYAEF  255 (993)
T ss_pred             -ccC-CCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c------cccCceEEEEEecCCC-CeEEcCHHHH
Confidence             123 23789999999999765554    45999999987531   1      1233566666666654 9999999999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC-----cEEEEEecccccccchh
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG-----TSVVLYRNREIRKHQFV  370 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g-----~g~l~~r~~~~~~~~~~  370 (438)
                      +++||++|++++| +|..-...+        +  -+....|+|+++.++|||| +|.|     +|++.++++..+. ...
T Consensus       256 ~~~ah~~GaL~iV-aad~lal~~--------l--~~pge~GADi~vgsgqKwg-~P~G~GGP~aGflavr~~~~r~-~Pg  322 (993)
T PLN02414        256 VKNAHANGVKVVM-ATDLLALTM--------L--KPPGEWGADIVVGSAQRFG-VPMGYGGPHAAFLATSQEYKRL-MPG  322 (993)
T ss_pred             HHHHHHcCCEEEE-EECHHHhcC--------C--CCHhhccCcEEEECCCccc-cCCCCCCCCeeEEEECHHHHhh-CCC
Confidence            9999999999999 665322221        1  1357789999999999997 4444     8999998764332 111


Q ss_pred             cccccCC----CccC-----CCCc-----cCCCCCchHHHHHHH-----HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          371 AVTEWSG----GLYV-----SPTV-----AGSRPGGLIAGAWAA-----LMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       371 ~~~~~~g----~~~~-----~~~~-----~gsr~~~~ia~~~aa-----l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      ....|..    ....     ....     .|+..-....+++++     +.++|..|++++.+++..++.+++++|++. 
T Consensus       323 riVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-  401 (993)
T PLN02414        323 RIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-  401 (993)
T ss_pred             cccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-
Confidence            1222311    1110     0111     122222111223322     235689999999999999999999999874 


Q ss_pred             Cccc
Q 013675          432 MFLP  435 (438)
Q Consensus       432 g~~~  435 (438)
                      |+++
T Consensus       402 G~~~  405 (993)
T PLN02414        402 GFQV  405 (993)
T ss_pred             CCcc
Confidence            6664

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.89  E-value=2.2e-21  Score=208.33  Aligned_cols=327  Identities=13%  Similarity=0.080  Sum_probs=225.5

Q ss_pred             hhhHHHHHHHHhhhhhccc-cccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHH
Q 013675           73 VNKYIEAEKQKVVDKMQSG-VKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLIN  149 (438)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  149 (438)
                      +++|++....+.++++..+ ++++ +...+..||+ ++| .|++++++++..++.....+..++.|++..++.+...++.
T Consensus        10 ~~~ML~~iG~~s~d~l~~~~iP~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~   88 (939)
T TIGR00461        10 QKKMLKTMGYSDLNALIEQLVPPNILKRRPLQLEA-PSKEYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLE   88 (939)
T ss_pred             HHHHHHhcCCCCHHHHhhccCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHh
Confidence            4456666666777788777 4433 3344567876 467 9999999999666655556666666665554221112222


Q ss_pred             HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE
Q 013675          150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM  229 (438)
Q Consensus       150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V  229 (438)
                       .=.-+...+|++++.++|..++..+++.++++|.|++..+    .  .+..++|.+...++++.+..    ++ ++++|
T Consensus        89 -~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aN----a--Sl~d~atA~aEa~~~a~~~~----~~-~~~~v  156 (939)
T TIGR00461        89 -NPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVAN----A--SLLDEGTAAAEAMALSFNVS----KK-KANKF  156 (939)
T ss_pred             -CchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhh----h--hccchhhHHHHHHHHHHHhh----cC-CCCEE
Confidence             1122456689999999999999999999999999999876    4  78899998888777776532    11 23789


Q ss_pred             EecCCCcCcHHHHHh----hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCe
Q 013675          230 IIPVSAHSAYDKAAQ----YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTC  305 (438)
Q Consensus       230 iv~~~~h~s~~~a~~----~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~  305 (438)
                      ++++..|+....+.+    ..|++++.++        +++|++.+  +++++++++|++ +|.++|+++|++++|+.|.+
T Consensus       157 lv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~--~~~~v~~q~Pn~-~G~ied~~~i~~~~h~~gal  225 (939)
T TIGR00461       157 FVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAV--DVFGCLLQYPAT-DGSILDYKQLIDALHSHKSL  225 (939)
T ss_pred             EECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcC--CEEEEEEECCCC-CeEEecHHHHHHHHHHcCCE
Confidence            999999999775555    6699998874        45677766  688999999987 99999999999999999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccchhc---ccccCCC
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQFVA---VTEWSGG  378 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~~~~---~~~~~g~  378 (438)
                      +++++-.-+..+           ..+....|+|+++.++++||    +|+++.|++.++++-.+...-..   ..+-.|.
T Consensus       226 ~~~~ad~~al~l-----------l~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~  294 (939)
T TIGR00461       226 VSVAADLMALTL-----------LTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGN  294 (939)
T ss_pred             EEEEechHHhCC-----------cCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCC
Confidence            999766432222           13346679999988889886    45666899999876444322111   1111221


Q ss_pred             c-c-C---CCCccCCCCCc--------hHHHHHHH--HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          379 L-Y-V---SPTVAGSRPGG--------LIAGAWAA--LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       379 ~-~-~---~~~~~gsr~~~--------~ia~~~aa--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      . | .   +....=+|..+        .+.++.++  +.++|.+|++++.+++..++.++++.|++ .|+++
T Consensus       295 ~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~  365 (939)
T TIGR00461       295 TALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHEL  365 (939)
T ss_pred             ccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcc
Confidence            1 0 0   11111122111        11222223  45689999999999999999999999998 58775

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.89  E-value=1.4e-21  Score=194.28  Aligned_cols=243  Identities=18%  Similarity=0.179  Sum_probs=178.0

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-cCCCcCc-HHHHHhh
Q 013675          168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-PVSAHSA-YDKAAQY  245 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-~~~~h~s-~~~a~~~  245 (438)
                      ...++.+++++.+++++|.++..    ...++++|||+++..++.++..     +|   +++++ ....|.. +..+++.
T Consensus        28 ~~~~~~~~~~~~la~~~~~~~~~----~~i~~~~~gt~~l~~~~~~~~~-----~~---~~vi~~~~~~~~~~~~~~a~~   95 (355)
T TIGR03301        28 EFNDVTDQVRDRLLALAGGDDNH----TCVLLQGSGTFAVEATIGSLVP-----RD---GKLLVLINGAYGERLAKICEY   95 (355)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCC----cEEEEeCCcHHHHHHHHHhccC-----CC---CeEEEECCCchhhHHHHHHHH
Confidence            44577888999999999998653    1226899999999999998752     34   56554 4444544 5678889


Q ss_pred             cCcEEEEeeCCCCCccCHHHHHHhhcc--CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          246 FNIKLWRVPVDKEFRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       246 ~Gi~v~~v~~~~~~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      +|++++.++.++++.+|++++++++++  ++++++.++++|++|.+.|+++|+++|++||+++++|++++-+..      
T Consensus        96 ~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~------  169 (355)
T TIGR03301        96 LGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAI------  169 (355)
T ss_pred             cCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCc------
Confidence            999999999987889999999999975  456888899999999999999999999999999999987642221      


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC------CccCCCCccCCCCCchHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG------GLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g------~~~~~~~~~gsr~~~~ia~~  397 (438)
                           ++++...++|+++.++|||+++|.|+|+++++++.+........+.+..      .........++.+...++++
T Consensus       170 -----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~  244 (355)
T TIGR03301       170 -----PIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAF  244 (355)
T ss_pred             -----ccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHH
Confidence                 3556667899999999999889999999888765332211000000000      00000011223333445677


Q ss_pred             HHHHHHHcHHH-HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          398 WAALMSLGQEG-YLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       398 ~aal~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..+++.+..+| +.+..++..++++++.+.|+++ |++
T Consensus       245 ~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~  281 (355)
T TIGR03301       245 AQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQ  281 (355)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence            77888777776 8888999999999999999876 554

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.89  E-value=1.9e-21  Score=194.69  Aligned_cols=244  Identities=20%  Similarity=0.280  Sum_probs=181.7

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HHHHh
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DKAAQ  244 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~a~~  244 (438)
                      +...+..+++++.+++++|.+++.    ..-++|++||+++..++.++..     +|   +++++....++..  .+.++
T Consensus        33 ~~~~~~~~~~~~~l~~l~~~~~~~----~~i~~~~~gt~~l~~~~~~l~~-----~~---~~vlv~~~~~~~~~~~~~~~  100 (368)
T PRK13479         33 DDFNALTASVRAKLVAIATGEEGY----TCVPLQGSGTFSVEAAIGSLVP-----RD---GKVLVPDNGAYGARIAQIAE  100 (368)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCc----eEEEEcCCcHHHHHHHHHhccC-----CC---CeEEEEeCCchHHHHHHHHH
Confidence            445567889999999999997532    0227899999999999998753     55   6788877666554  47888


Q ss_pred             hcCcEEEEeeCCCCCccCHHHHHHhhccC--cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          245 YFNIKLWRVPVDKEFRADVKAIKKYINRN--TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~--t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      ..|++++.+|+++++.+|+++++++++++  +++|++++++|+||.+.|+++|.++|+++|++++||++++         
T Consensus       101 ~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~---------  171 (368)
T PRK13479        101 YLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSS---------  171 (368)
T ss_pred             HcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccc---------
Confidence            99999999999878889999999999754  5689999999999999999999999999999999997753         


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc-----cC--CCCccCCCCCchHH
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL-----YV--SPTVAGSRPGGLIA  395 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~-----~~--~~~~~gsr~~~~ia  395 (438)
                      .|. . +++....++|++++++|||+++|+|+|+++++++...... .....|....     +.  ......+.+...++
T Consensus       172 ~g~-~-~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  248 (368)
T PRK13479        172 FGA-I-PIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACK-GNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVA  248 (368)
T ss_pred             cCC-c-cccccccCceEEEecCccccccCCCceEEEECHHHHHHhh-cCCCCeeecHHHHHhhhcccCCCCCCCcHHHHH
Confidence            221 1 4666667899999999999999999999988764322111 1111111000     00  00111133344567


Q ss_pred             HHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          396 GAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       396 ~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++.+++..+..+ ++++..+++.++++++.+.|+++ |+++
T Consensus       249 ~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  288 (368)
T PRK13479        249 AFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEP  288 (368)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence            888888877555 47888899999999999999887 5553

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.88  E-value=7.4e-22  Score=191.64  Aligned_cols=227  Identities=15%  Similarity=0.112  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ...++++.+++++|.+..     +  ++|+|+|+++..++.++.     ++|   ++|+++.+.|.++..++...|++++
T Consensus        60 ~i~~~~~~~A~~~ga~~~-----~--~~~~Gst~a~~~~l~al~-----~~g---d~Vlv~~~~h~s~~~~~~~~g~~~~  124 (294)
T cd00615          60 PIKEAQELAARAFGAKHT-----F--FLVNGTSSSNKAVILAVC-----GPG---DKILIDRNCHKSVINGLVLSGAVPV  124 (294)
T ss_pred             HHHHHHHHHHHHhCCCCE-----E--EEcCcHHHHHHHHHHHcC-----CCC---CEEEEeCCchHHHHHHHHHCCCEEE
Confidence            345667789999998643     2  569999999999988875     377   8999999999999999999999999


Q ss_pred             EeeCCCC------CccCHHHHHHhhcc--CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          252 RVPVDKE------FRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       252 ~v~~~~~------~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      .++++.+      +.+|++++++++++  +++++++++| |++|.+.|+++|+++|+++|++++||+++++... |..  
T Consensus       125 ~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~-~~~--  200 (294)
T cd00615         125 YLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFR-FHP--  200 (294)
T ss_pred             EecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhc-cCc--
Confidence            9987532      47999999999964  6889999998 5799999999999999999999999999986432 111  


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS  403 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~  403 (438)
                       . . +.+....|+|+++.|+||++.++.++|++..+++......+....        .....++.+...++++-.+++.
T Consensus       201 -~-~-~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~--------~~~~ttsps~~~~asl~~a~~~  269 (294)
T cd00615         201 -I-L-PSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEAL--------NLHQSTSPSYLILASLDVARAM  269 (294)
T ss_pred             -c-c-CcchhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHH--------HHHCCCCcHHHHHHHHHHHHHH
Confidence             0 1 233445689999999999987777788877776522211111100        0111234444557788888877


Q ss_pred             HcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          404 LGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       404 ~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      +..+| .+..++..+++++++++|.+
T Consensus       270 ~~~~g-~~~~~~~~~~~~~~r~~l~~  294 (294)
T cd00615         270 MALEG-KELVEELIELALYARQEINK  294 (294)
T ss_pred             HHHHh-HHHHHHHHHHHHHHHHHHhC
Confidence            75555 44678888899999988753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.88  E-value=2.6e-21  Score=210.91  Aligned_cols=249  Identities=14%  Similarity=0.039  Sum_probs=185.0

Q ss_pred             ccCCCC-cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC
Q 013675          157 HTNPLH-LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA  235 (438)
Q Consensus       157 ~~n~~~-~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~  235 (438)
                      ..|+.. +..+....++.+++++.+++++|+++++  -.|  +||+|+|+|+.++..++..    ++|   ++|+++...
T Consensus        63 ~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~--~~V--vFtsnaT~alnlva~~l~~----~~g---d~Iv~t~~e  131 (805)
T PLN02724         63 YGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSD--YAC--VFTSGATAALKLVGETFPW----SSE---SHFCYTLEN  131 (805)
T ss_pred             cCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccc--eEE--EEeCChHHHHHHHHHHCCC----CCC---CeEEEeecc
Confidence            345543 2234556778889999999999997643  014  8999999999998777531    356   899999999


Q ss_pred             cCcHHH---HHhhcCcEEEEeeCC--------CCCccCH--HHHHHhh----------ccCcEEEEEecCCCCCccccCH
Q 013675          236 HSAYDK---AAQYFNIKLWRVPVD--------KEFRADV--KAIKKYI----------NRNTVLIVGSAPGFPHGIIDPI  292 (438)
Q Consensus       236 h~s~~~---a~~~~Gi~v~~v~~~--------~~~~~d~--~~Le~~I----------~~~t~~vv~~~~~~~tG~iddi  292 (438)
                      |.+...   .++..|++++.+|++        +++.+|+  +++++.+          +++|++|++++.+|.+|.+.|+
T Consensus       132 H~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi  211 (805)
T PLN02724        132 HNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPL  211 (805)
T ss_pred             ccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCH
Confidence            988553   344569999999987        3444544  6677764          2457899999999999999999


Q ss_pred             HHHHHHHHHc--------CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccc
Q 013675          293 QELGELALSH--------GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREI  364 (438)
Q Consensus       293 ~~I~~la~~~--------~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~  364 (438)
                      +.|.++++..        +++++||++++         +|+ . ++|+...++|++++|+|||+++|.|+|++++|++..
T Consensus       212 ~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~---------~g~-~-piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~  280 (805)
T PLN02724        212 DLVKLIKDNQHSNFSKSGRWMVLLDAAKG---------CGT-S-PPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAA  280 (805)
T ss_pred             HHHHHHHHhcccccccCcceEEEeehhhh---------cCC-C-CCChhhcCCCEEEEecceeccCCCCceEEEEehhhh
Confidence            9876655532        35799999965         343 3 578888899999999999976799999999986533


Q ss_pred             cccchhcccccCCCc----------c-------CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh
Q 013675          365 RKHQFVAVTEWSGGL----------Y-------VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL  427 (438)
Q Consensus       365 ~~~~~~~~~~~~g~~----------~-------~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L  427 (438)
                      ...    .+.+.|+.          +       ......|+.+...++++.++++++-..|++++.++..++++++.+.|
T Consensus       281 ~~l----~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L  356 (805)
T PLN02724        281 KLL----KKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSL  356 (805)
T ss_pred             hhh----cCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            211    11222221          0       01123467777778899999999888899999999999999999999


Q ss_pred             hcCC
Q 013675          428 VLFP  431 (438)
Q Consensus       428 ~~~~  431 (438)
                      ++++
T Consensus       357 ~~l~  360 (805)
T PLN02724        357 RNLK  360 (805)
T ss_pred             Hhcc
Confidence            9886

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.88  E-value=1.3e-20  Score=201.17  Aligned_cols=325  Identities=14%  Similarity=0.095  Sum_probs=218.8

Q ss_pred             hhhHHHHHHHHhhhhhc-cccccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHH
Q 013675           73 VNKYIEAEKQKVVDKMQ-SGVKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLIN  149 (438)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  149 (438)
                      +++|++....+.++++. ..+++. +....++||+ +.+ .|++++++++..++..+..+..++.|.+..|+.+...++.
T Consensus        25 ~~~ML~~iG~~s~d~l~~~~iP~~ir~~~~l~lp~-~~sE~e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~  103 (954)
T PRK12566         25 QQAMLDALGVASRAELIEQTVPPAIRLNRPLDLPA-ALDEQAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLE  103 (954)
T ss_pred             HHHHHHhcCccCHHHHhhccCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHh
Confidence            44566655667777887 444433 3344567877 568 9999999999766666666666666666555222223332


Q ss_pred             HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE
Q 013675          150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM  229 (438)
Q Consensus       150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V  229 (438)
                       .=.-+...+|++++.++|..+...+.+.|+++|.|++..+    .  .+..++|.+-..++++.|.. +. +   +.++
T Consensus       104 -~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaN----A--Sl~D~atA~aEA~~ma~~~~-~~-k---~~~~  171 (954)
T PRK12566        104 -NPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLAN----A--SLLDEATAAAEAMALAKRVA-KS-K---SNRF  171 (954)
T ss_pred             -CchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhh----h--hhccchhHHHHHHHHHHHHh-hc-C---CCEE
Confidence             1122455689999999999999999999999999999776    3  67788887666555444421 11 1   3689


Q ss_pred             EecCCCcCcHHHHHhhc----CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCe
Q 013675          230 IIPVSAHSAYDKAAQYF----NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTC  305 (438)
Q Consensus       230 iv~~~~h~s~~~a~~~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~  305 (438)
                      +++...|+....+.+.+    |++++.           +++++.+++++++|++.+|++ .|.+.|+++|.+++|+.|..
T Consensus       172 ~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~~~~~~v~vq~P~~-~G~i~d~~~i~~~~h~~gal  239 (954)
T PRK12566        172 FVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAAHAVFGALLQYPDT-HGEIRDLRPLIDQLHGQQAL  239 (954)
T ss_pred             EECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCCCCEEEEEEECCCC-ceEEccHHHHHHHHHHcCCE
Confidence            99999999987766654    777764           445556777899999999987 89999999999999999998


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccchh---cccccCCC
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQFV---AVTEWSGG  378 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~~~---~~~~~~g~  378 (438)
                      +++-+-.-        +++.--|   ....|+|+++.+++.+|    ||++..|++.++++-.++..-+   ...|-.|.
T Consensus       240 ~~~~~d~l--------aL~ll~~---Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~  308 (954)
T PRK12566        240 ACVAADLL--------SLLVLTP---PGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGN  308 (954)
T ss_pred             EEEEeCHH--------HHhCCCC---hhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCC
Confidence            55332211        1221112   36679999999888664    7778899999987644432110   11111111


Q ss_pred             ccCCCCcc-----CCCCC------------chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          379 LYVSPTVA-----GSRPG------------GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       379 ~~~~~~~~-----gsr~~------------~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      .-...+++     =+|.-            ++++++|+++  +|.+|++++.+++..++.++++.|++ +|+++.
T Consensus       309 ~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~--~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~  380 (954)
T PRK12566        309 TALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVY--HGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRL  380 (954)
T ss_pred             eeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHh-cCCccc
Confidence            10001111     11211            2345555554  79999999999999999999999998 687753

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.87  E-value=8.7e-21  Score=194.77  Aligned_cols=237  Identities=13%  Similarity=0.129  Sum_probs=172.7

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEc---CChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMT---SGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t---~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      ....++|+.+++.++++||+++++    +  +++   ++||+|+.+++.++.     ++|   ++|+++...|.+....+
T Consensus        76 ~~~~~iE~~ar~~~a~lf~a~~~~----~--~~~~~~~sgt~an~~v~~al~-----~~g---d~Ii~~~~ehg~~l~~~  141 (452)
T PTZ00094         76 EVVDKIENLCQKRALEAFGLDPEE----W--GVNVQPYSGSPANFAVYTALL-----QPH---DRIMGLDLPSGGHLTHG  141 (452)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCccc----c--eeecCCCchHHHHHHHHHHhc-----CCC---CEEEecccccCCccccc
Confidence            445667777899999999998765    3  444   899999999999884     367   89999999998865443


Q ss_pred             hh----------cCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675          244 QY----------FNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       244 ~~----------~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~  312 (438)
                      ..          .++++..+++++++.+|+++|++++++ ++++++++  ++.+|.+.|+++|+++|+++|+++|||+++
T Consensus       142 ~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq  219 (452)
T PTZ00094        142 FYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAH  219 (452)
T ss_pred             ccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccc
Confidence            21          123455666777899999999999964 67666654  345999999999999999999999999998


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      +.+.+|.    +. . +.  ...++|++++++|||++||.| |+++++++ .... +.   .+... ...+...|+..-.
T Consensus       220 ~~G~i~~----~~-~-~~--~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~-~~~~-l~---~~~~~-~~~p~~~G~~~~~  284 (452)
T PTZ00094        220 TSGLVAA----GV-L-PS--PFPYADVVTTTTHKSLRGPRS-GLIFYRKK-VKPD-IE---NKINE-AVFPGLQGGPHNH  284 (452)
T ss_pred             hhccccC----CC-C-CC--CCCCCcEEEcCCccCCCCCCc-eEEEEecc-cchH-HH---Hhhcc-ccCCCCCCCchHH
Confidence            7766641    10 0 11  123799999999999899998 88888654 2211 00   00000 0112233444445


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .++++.++++.+...++++..+++.+++++|.+.|++. |+++
T Consensus       285 ~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v  326 (452)
T PTZ00094        285 QIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDL  326 (452)
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEE
Confidence            68889999988877788889999999999999999875 6543

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=2e-20  Score=187.85  Aligned_cols=247  Identities=17%  Similarity=0.162  Sum_probs=182.7

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      +|....|..++.+.+.+++.+.+|.+.+. ..+|  ++|.|+++|+..++.++.+     +|   |+|+++++.|+++..
T Consensus        60 ~Y~~~~G~~~LReaia~~~~~~~~~~~~~-~~ei--ivt~Ga~~al~~~~~a~~~-----pG---DeVlip~P~Y~~y~~  128 (393)
T COG0436          60 HYTPSAGIPELREAIAEKYKRRYGLDVDP-EEEI--IVTAGAKEALFLAFLALLN-----PG---DEVLIPDPGYPSYEA  128 (393)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCeE--EEeCCHHHHHHHHHHHhcC-----CC---CEEEEeCCCCcCHHH
Confidence            55578899999999999999998854221 0126  9999999999999999985     88   999999999999999


Q ss_pred             HHhhcCcEEEEeeCC---CCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          242 AAQYFNIKLWRVPVD---KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~---~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      .....|.+++.+|++   .++.+|+++++++|+++|++|++++||||||.+.+   +++|+++|++||++++.|++|.++
T Consensus       129 ~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l  208 (393)
T COG0436         129 AVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEEL  208 (393)
T ss_pred             HHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhc
Confidence            999999999999975   37999999999999999999999999999999966   789999999999999999999877


Q ss_pred             hhhhhhhcCCCCCCCccCC-CCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          316 VLPFAKKLGYPIPPFDFSV-QGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~-~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      ..-   ..-+ .+...... ....+..-|..|.. +++..+|+++..++++.+........             .-.+..
T Consensus       209 ~yd---~~~~-~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~-------------~~~~~~  271 (393)
T COG0436         209 VYD---GAEH-PSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSY-------------LTSCAP  271 (393)
T ss_pred             ccC---CCCc-CCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHh-------------cccCCC
Confidence            651   1000 11111111 11244555778983 35566999887755444332211110             011111


Q ss_pred             HHHHHHHHHHHcH----HHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          394 IAGAWAALMSLGQ----EGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       394 ia~~~aal~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      ...+.++...+..    ...++..+...+.++.+.+.|.+++|+.+.
T Consensus       272 ~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~  318 (393)
T COG0436         272 TPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVV  318 (393)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeec
Confidence            3355555555532    356666678889999999999999887653

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.87  E-value=6e-20  Score=184.05  Aligned_cols=230  Identities=16%  Similarity=0.101  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ...+.++.+++++|.++.        .+++|+++++..++.++.     ++|   ++|+++...|++...+++..|++++
T Consensus        52 ~~~~~~e~lA~~~g~~~~--------~i~~g~~~a~~~~~~~l~-----~~g---d~Vl~~~~~h~s~~~~~~~~g~~~~  115 (370)
T TIGR02539        52 PIHDFLEDLAEFLGMDEA--------RVTHGAREGKFAVMHALC-----KEG---DWVVLDGLAHYTSYVAAERAGLNVK  115 (370)
T ss_pred             HHHHHHHHHHHHhCCCce--------EEECChHHHHHHHHHHhh-----CCC---CEEEECCcccHHHHHHHHHcCCEEE
Confidence            334556679999999753        578999999999988875     366   8999999999998888999999999


Q ss_pred             EeeCCC--CCccCHHHHHHhhcc-------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          252 RVPVDK--EFRADVKAIKKYINR-------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       252 ~v~~~~--~~~~d~~~Le~~I~~-------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      .+|.++  ++.+|+++|++++++       ++++|++++|++++|.+.|+++|+++|+++|+++++|++|+.+..|    
T Consensus       116 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~----  191 (370)
T TIGR02539       116 EVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMP----  191 (370)
T ss_pred             EEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcC----
Confidence            999863  688999999999963       6889999999999999999999999999999999999998754322    


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                             .+....++|+++.++||++.++.++|+++.++ ++.+........|.-...  ....++......+++++++.
T Consensus       192 -------~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~-~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~al~  261 (370)
T TIGR02539       192 -------VSAKEIGADFIVGSGHKSMAASGPCGVLGMSE-EWEDIVLRKSRYSPVKEV--ELLGCTSRGAPIVTMMASFP  261 (370)
T ss_pred             -------CCHHHcCCCEEEeeCcccccCCCCEEEEEECH-HHHhhhcccccCCcccee--eeecccccccHHHHHHHHHH
Confidence                   23334568999999999976666689887764 433322222222211110  00112222233445555554


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .. .+ +.+..++..++++++++.|+++ |++
T Consensus       262 ~~-~~-~l~~~~~~~~~~~~l~~~L~~~-g~~  290 (370)
T TIGR02539       262 HV-VE-RVKRWDEEVKKTRWFVAELEDI-GFI  290 (370)
T ss_pred             HH-HH-HHHHHHHHHHHHHHHHHHHHhC-CcE
Confidence            32 22 2233444556678999999887 554

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.85  E-value=1.3e-19  Score=184.20  Aligned_cols=227  Identities=19%  Similarity=0.170  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~Gi  248 (438)
                      .+++.+.++++.|....        ++|++||+|+.+++.++.     ++|   ++||++...|.+....+    ..+|+
T Consensus        66 ~~~le~~lA~l~g~~~a--------v~~sSGt~Al~~al~~ll-----~~G---d~Vi~~~~~y~~t~~~~~~~l~~~Gi  129 (433)
T PRK08134         66 VAVLEERVAALEGGVGA--------IATASGQAALHLAIATLM-----GAG---SHIVASSALYGGSHNLLHYTLRRFGI  129 (433)
T ss_pred             HHHHHHHHHHHhCCCcE--------EEeCCHHHHHHHHHHHHh-----CCC---CEEEEeCCccHHHHHHHHHHHhhCCe
Confidence            33444568899987642        899999999999998874     367   89999999998764444    45799


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +++.++++     |+++++++|+++|++|++++++||+|.+.|+++|+++|+++|++++||++++....+        . 
T Consensus       130 ~v~~vd~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~--------~-  195 (433)
T PRK08134        130 ETTFVKPG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLL--------R-  195 (433)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccC--------C-
Confidence            99999875     899999999999999999999999999999999999999999999999998644331        1 


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEeccccc--c-----cchhcccccCCCccCCC----------------
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIR--K-----HQFVAVTEWSGGLYVSP----------------  383 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~--~-----~~~~~~~~~~g~~~~~~----------------  383 (438)
                      +   ...|+|+++.|.|||+ +|.|  .|.+++......  .     ........| ++.....                
T Consensus       196 p---l~~GaD~vv~S~tK~l-~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~  270 (433)
T PRK08134        196 P---FEHGADLVYHSATKFL-GGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGF-HGMVFAEESTVAAFLLRARREGL  270 (433)
T ss_pred             c---hhcCCCEEEecccccc-CCCCCceEEEEEecCccccccccccccccCCcccc-cccchhhccchhHHHHHHHHHHH
Confidence            2   2468999999999995 5555  455555322111  0     000000011 1110000                


Q ss_pred             CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      ...|....  ...+|..+  .|.+.+..+.++..++|..+.+.|+++|.++-+.|
T Consensus       271 ~~~G~~ls--~~~A~l~~--~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~y  321 (433)
T PRK08134        271 RDFGACLS--PMNAWQLL--QGIETLPLRMERHVANTRKVVAFLASHPAVARVAH  321 (433)
T ss_pred             HhcCCCCC--HHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            00111111  12444443  56678899999999999999999999998875544

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.85  E-value=9.7e-20  Score=181.81  Aligned_cols=228  Identities=15%  Similarity=0.118  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC------------CCCeEEecCCCc
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI------------TRPEMIIPVSAH  236 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~------------~~~~Viv~~~~h  236 (438)
                      ..++.+++.+++++++|.+.      +  ++|+|+|+|+.++++++..     +|-            ..++|+++.+.+
T Consensus        43 ~~~~~~~~~~~~a~~~g~~~------~--~~~~g~t~al~~al~al~~-----~Gd~~~~~~~~~s~~~~~eVi~~~~~~  109 (363)
T TIGR01437        43 IKELVNKTGEYIANLLGVED------A--VIVSSASAGIAQSVAAVIT-----RGNRYLVENLHDSKIEVNEVVLPKGHN  109 (363)
T ss_pred             HHHHHHHHHHHHHHhhCCCe------E--EEEcCHHHHHHHHHHHHhc-----CCCcchhhcccccccccceEEEECccc
Confidence            45677889999999999862      3  8999999999999999853     440            124899987544


Q ss_pred             Cc----HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEE-EecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675          237 SA----YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIV-GSAPGFPHGIIDPIQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       237 ~s----~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv-~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a  311 (438)
                      ..    +..++...|++++.++.  ++.+|+++++++|+++|++++ ++.+++++|.+.|+++|+++|++||+++++|++
T Consensus       110 ~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a  187 (363)
T TIGR01437       110 VDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAA  187 (363)
T ss_pred             hhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECC
Confidence            43    35677788999999987  356999999999999999766 567788999999999999999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      ++.-.    +         .....|+|++++|+||++.+|. .|+++.+ ++......   ..+.+..  .....|   .
T Consensus       188 ~~~~~----~---------~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~-~~~i~~~~---~~~~~~~--~~~~~~---~  244 (363)
T TIGR01437       188 AEEDL----Q---------KYYRLGADLVIYSGAKAIEGPT-SGLVLGK-KKYIEWVK---LQSKGIG--RAMKVG---K  244 (363)
T ss_pred             CCCch----H---------HHHHcCCCEEEEeCCcccCCCc-eEEEEEc-HHHHHHHH---hccCCCc--ceeccC---H
Confidence            86111    0         0112368999999999988888 6876654 33332211   1111110  000011   1


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++++.+++..+-..+. +..+...+.++++.++|+++||+++
T Consensus       245 ~~~~gl~aAl~~~~~~~~-~~~~~~~~~~~~l~~~L~~i~g~~~  287 (363)
T TIGR01437       245 ENILGLTAALEQYLSTGK-ESGAEMVAKLTPFIEALNTLKGVSA  287 (363)
T ss_pred             HHHHHHHHHHHHHHccCc-ccHHHHHHHHHHHHHHHhcCCCeEE
Confidence            236688888877644343 3333444567789999999999865

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.84  E-value=4.4e-19  Score=171.07  Aligned_cols=295  Identities=16%  Similarity=0.107  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccC-CCCcccchhHHHHHHHHHHHHHHHhCCCC
Q 013675          110 VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN-PLHLDIFQSVARFEAEVIAMTAALLGNKE  188 (438)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~e~~~~~~~a~l~g~~~  188 (438)
                      ..++-++.++...+..-.+  .|..+++..+    ++.+.+++....... ..+|...-|..++...+++++++++|...
T Consensus        17 ~~vw~e~~~la~e~~~~~~--LgqGfp~~~~----P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~   90 (420)
T KOG0257|consen   17 PYVWTEINRLAAEHKVPNP--LGQGFPDFPP----PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLL   90 (420)
T ss_pred             CcHHHHHHHHHHhcCCCCc--ccCCCCCCCC----cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhcccc
Confidence            5677777776332222111  3433344443    466677666655553 34466667788899999999999887632


Q ss_pred             CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC--------CCCc
Q 013675          189 KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD--------KEFR  260 (438)
Q Consensus       189 ~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~--------~~~~  260 (438)
                      .. -++|  ++|.|+.+|+..+++++.+     +|   |+|++.++.+.++.....+.|.+.+.||..        +++.
T Consensus        91 ~~-~~eV--lVT~GA~~ai~~~~~~l~~-----~G---DeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~  159 (420)
T KOG0257|consen   91 DP-DDEV--LVTAGANEAISSALLGLLN-----PG---DEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWT  159 (420)
T ss_pred             CC-cccE--EEecCchHHHHHHHHHHcC-----CC---CEEEEecCcchhhhhHHhhcCCcceeeccccccccccCcccc
Confidence            11 1137  9999999999999999985     88   999999999999999999999999999986        3789


Q ss_pred             cCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC-
Q 013675          261 ADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG-  336 (438)
Q Consensus       261 ~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g-  336 (438)
                      +|.+++|.+++++|++|++++|+||||.+.+   +++|+++|++||++++.|.+|..++.   +  |...+.+... +| 
T Consensus       160 ~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~---d--~~~h~r~asl-Pgm  233 (420)
T KOG0257|consen  160 LDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVY---D--GNKHIRIASL-PGM  233 (420)
T ss_pred             CChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhh---C--CCcceeeecC-Cch
Confidence            9999999999999999999999999999976   88999999999999999999975543   1  1101112212 44 


Q ss_pred             --ccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH--cH-HHHH
Q 013675          337 --VTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL--GQ-EGYL  410 (438)
Q Consensus       337 --vdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~--g~-~g~~  410 (438)
                        .++-+.|+.|+. +.+...|+++. ++.+.........+..   +..++.   -..+..++....+...  +. ....
T Consensus       234 ~ertitvgS~gKtf~~TGWrlGW~ig-p~~L~~~~~~vh~~~~---~~~~Tp---~q~A~a~a~~~~~~~~~p~~~y~~~  306 (420)
T KOG0257|consen  234 YERTITVGSFGKTFGVTGWRLGWAIG-PKHLYSALFPVHQNFV---FTCPTP---IQEASAAAFALELACLQPGGSYFIT  306 (420)
T ss_pred             hheEEEeccccceeeeeeeeeeeeec-hHHhhhhHHHHhhccc---cccCcH---HHHHHHHHHhhhhhccCCcchhHHH
Confidence              477778889992 33344898777 5554433222221110   000000   0011111222222101  11 2234


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          411 ENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       411 ~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++.+..+++++.|.+.|.++ |+++
T Consensus       307 ~~~~~y~~krdil~k~L~~l-g~~v  330 (420)
T KOG0257|consen  307 ELVKEYKEKRDILAKALEEL-GLKV  330 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCcc
Confidence            47888999999999999988 7664

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.84  E-value=4.6e-19  Score=178.30  Aligned_cols=257  Identities=14%  Similarity=0.140  Sum_probs=178.6

Q ss_pred             HHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCC
Q 013675          149 NEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR  226 (438)
Q Consensus       149 ~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~  226 (438)
                      .+++...+......|...++..++.+.+.+++.+.+|  .++++    +  ++|+|+++++.+++.++..     +|   
T Consensus        43 ~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~----i--~~t~g~~~al~~~~~~l~~-----~g---  108 (382)
T PRK06108         43 RDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPER----I--AVTSSGVQALMLAAQALVG-----PG---  108 (382)
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcce----E--EEeCChHHHHHHHHHHhcC-----CC---
Confidence            3333333333333455567778889999999998888  55554    6  8999999999999888753     67   


Q ss_pred             CeEEecCCCcCcHHHHHhhcCcEEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHH
Q 013675          227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELAL  300 (438)
Q Consensus       227 ~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~  300 (438)
                      ++|+++.++|+.+...++.+|++++.+|++.   ++.+|++++++.++++++++++++|+||||.+.+   +++|.++|+
T Consensus       109 d~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~  188 (382)
T PRK06108        109 DEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCR  188 (382)
T ss_pred             CEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHH
Confidence            8999999999999999999999999999973   4679999999999889999999999999998865   678999999


Q ss_pred             HcCCeEEEeccccchhhhhhhhcCCCCCC-CccCC-CCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCC
Q 013675          301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPP-FDFSV-QGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSG  377 (438)
Q Consensus       301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~-~~~~~-~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g  377 (438)
                      ++|+++++|++|+.+...    .+...+. .+... ..-.++..+++|.+ ..+.++|+++.++ ++....... ..+..
T Consensus       189 ~~~~~li~De~y~~~~~~----~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~-~~~~~~~~~-~~~~~  262 (382)
T PRK06108        189 RHGLWIVADEVYERLYYA----PGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPP-ALGQVLEKL-IEYNT  262 (382)
T ss_pred             HCCcEEEEehhhhhhccC----CCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCH-HHHHHHHHH-HHhcc
Confidence            999999999999876541    0100111 12111 12357788999973 3445589988754 333221110 01100


Q ss_pred             CccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       378 ~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                               ..-+.....++..++. -+.+.+++..++..++.+++.+.|++++++++
T Consensus       263 ---------~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  310 (382)
T PRK06108        263 ---------SCVAQFVQRAAVAALD-EGEDFVAELVARLRRSRDHLVDALRALPGVEV  310 (382)
T ss_pred             ---------cCCChHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence                     0001111122333332 24455678888899999999999988877654

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.84  E-value=3e-19  Score=180.31  Aligned_cols=241  Identities=20%  Similarity=0.210  Sum_probs=172.3

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      ..|...++..++++.+.+++.+.+|.  ++++    +  ++|+|+++|+.+++.++.     .+|   ++|+++.++|.+
T Consensus        64 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---~~Vlv~~p~y~~  129 (391)
T PRK08361         64 THYTPNAGIPELREAIAEYYKKFYGVDVDVDN----V--IVTAGAYEATYLAFESLL-----EEG---DEVIIPDPAFVC  129 (391)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCccc----E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEcCCCCcc
Confidence            33444567788888888888777764  4444    6  899999999999988875     367   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +...+...|++++.+|+++  ++.+|++++++.++++++++++++|+||||.+.|   +++|.++|+++++++++|++|+
T Consensus       130 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~  209 (391)
T PRK08361        130 YVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYE  209 (391)
T ss_pred             cHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccc
Confidence            9999999999999999975  5679999999999999999999999999999998   8899999999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      .+...   ...  .+++.......++++.+++|. ++.+|  +|+++..+ ++.+..........++          -+ 
T Consensus       210 ~~~~~---~~~--~~~~~~~~~~~~i~~~s~SK~-~~~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~----------~~-  271 (391)
T PRK08361        210 HFLYE---GAK--HYPMIKYAPDNTILANSFSKT-FAMTGWRLGFVIAPE-QVIKDMIKLHAYIIGN----------VA-  271 (391)
T ss_pred             cceeC---CCC--CCCHhhcCCCCEEEEecCchh-cCCcHhhhhhhccCH-HHHHHHHHHHhhhccC----------CC-
Confidence            66431   100  111111112347888999998 56556  89988754 3332211111100000          00 


Q ss_pred             chHHHHHHHHHHHc--H--HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          392 GLIAGAWAALMSLG--Q--EGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       392 ~~ia~~~aal~~~g--~--~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                        ...+.++...+.  .  +.+++..++..+..+.+.+.|++++++++
T Consensus       272 --~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  317 (391)
T PRK08361        272 --SFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKV  317 (391)
T ss_pred             --hHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence              112333333332  1  34667777788888899999988877653

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.84  E-value=8.3e-19  Score=177.01  Aligned_cols=240  Identities=17%  Similarity=0.178  Sum_probs=172.4

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..|....+..++.+.+++++++.+|.+   +++    +  ++|+|+++++..++.++.     .+|   |+|+++.+.|.
T Consensus        59 ~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~----i--~~t~G~~~~l~~~~~~~~-----~~g---d~Vlv~~P~y~  124 (389)
T PRK05957         59 HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQA----I--VVTAGSNMAFMNAILAIT-----DPG---DEIILNTPYYF  124 (389)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCe----E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEeCCCCc
Confidence            345556777788899999999999974   333    5  899999999998888765     367   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          238 AYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      .+...++..|++++.+|.++++.+|+++++++++++|++|++++|+||||.+.|   +++|+++|+++|+++++|++|+.
T Consensus       125 ~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~  204 (389)
T PRK05957        125 NHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEY  204 (389)
T ss_pred             CHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchh
Confidence            988888999999999999888899999999999999999999999999999987   88999999999999999999986


Q ss_pred             hhhhhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          315 FVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      +...   .... .+.... ....-.++..+..|. ++.+|  +|+++..+ ++.+........+...          -+ 
T Consensus       205 ~~~~---~~~~-~~~~~~~~~~~~~i~~~S~SK~-~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~----------~~-  267 (389)
T PRK05957        205 FTYD---GVKH-FSPGSIPGSGNHTISLYSLSKA-YGFASWRIGYMVIPI-HLLEAIKKIQDTILIC----------PP-  267 (389)
T ss_pred             ccCC---CCCc-cChhhCCCccCcEEEEecchhh-ccCccceeEEEecCH-HHHHHHHHHHhhcccC----------CC-
Confidence            6431   1110 111111 111224666778898 56555  99987754 3332211111001000          01 


Q ss_pred             chHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          392 GLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       392 ~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                        ..+..++...+  +...+++..+++.++++++.+.|++++++
T Consensus       268 --~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  309 (389)
T PRK05957        268 --VVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDR  309 (389)
T ss_pred             --cHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              11333433334  34456777778888899999999887663

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.84  E-value=5.7e-19  Score=174.56  Aligned_cols=253  Identities=16%  Similarity=0.101  Sum_probs=184.1

Q ss_pred             hhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC
Q 013675          155 FAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS  234 (438)
Q Consensus       155 ~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~  234 (438)
                      ....+...+...++..++++.+.+++...++.+...  .++  ++++|+|+++..++.++..     +|   ++|+++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~--~~~~~~t~a~~~~~~~~~~-----~g---~~vl~~~~   91 (350)
T cd00609          24 ALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPP--EEI--VVTNGAQEALSLLLRALLN-----PG---DEVLVPDP   91 (350)
T ss_pred             hhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc--ceE--EEecCcHHHHHHHHHHhCC-----CC---CEEEEcCC
Confidence            344555566777888899999888888887743211  125  8999999999999888752     56   89999999


Q ss_pred             CcCcHHHHHhhcCcEEEEeeCCCCCccCH--HHHHHhhccCcEEEEEecCCCCCccccCHHHH---HHHHHHcCCeEEEe
Q 013675          235 AHSAYDKAAQYFNIKLWRVPVDKEFRADV--KAIKKYINRNTVLIVGSAPGFPHGIIDPIQEL---GELALSHGTCLHVD  309 (438)
Q Consensus       235 ~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~--~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I---~~la~~~~i~lhVD  309 (438)
                      .|.++..+++..|.+++.+|.++++..+.  +.+++.+++++++|++++++||+|.+.|++++   .++|+++|+++++|
T Consensus        92 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD  171 (350)
T cd00609          92 TYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISD  171 (350)
T ss_pred             CchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEe
Confidence            99999999999999999999988776665  78888888899999999999999999986655   48999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      ++++++....   .+. .........+.|++..++||++. ++.+.|+++.+++++.+...... .+.         .++
T Consensus       172 ~a~~~~~~~~---~~~-~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~-~~~---------~~~  237 (350)
T cd00609         172 EAYAELVYDG---EPP-PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLL-PYT---------TSG  237 (350)
T ss_pred             cchhhceeCC---ccc-ccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHH-Hhc---------ccC
Confidence            9998765420   000 00122345567999999999965 45678998877644433221110 000         112


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+.....++..+++... +++++..++..++++++.+.|++++...
T Consensus       238 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~  282 (350)
T cd00609         238 PSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLV  282 (350)
T ss_pred             CChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            22233445555554332 7888999999999999999999875543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.83  E-value=1.4e-19  Score=181.81  Aligned_cols=236  Identities=14%  Similarity=0.053  Sum_probs=171.1

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeEc-CChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH-
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMT-SGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK-  241 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~t-~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~-  241 (438)
                      .++.+.++.+++++.+++++|.++. +    +  +++ ++||+++..++.++.     +++  +..+++ ...|.+-.. 
T Consensus        42 r~~~f~~~~~~~r~~l~~l~~~~~~~~----v--~~~~gs~T~~~~~~~~~l~-----~~~--~~~vi~-~g~f~~~~~~  107 (378)
T PRK03080         42 RQKPVKALLKRVIEGTRELLSLPEGYE----V--GIVPGSDTGAWEMALWSLL-----GAR--RVDHLA-WESFGSKWAT  107 (378)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCce----E--EEECCchHHHHHHHHHhcC-----CCC--cceEEE-eCHHHHHHHH
Confidence            3457788899999999999999643 3    4  666 599999999998863     121  134554 457766433 


Q ss_pred             -HHhhcCc-EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          242 -AAQYFNI-KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       242 -a~~~~Gi-~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                       +++.+|+ +++.++.+++..+|+++++    . ++.|.++|.+|.||.+.|+++|++  +++|++++||++++.+..  
T Consensus       108 ~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~--  178 (378)
T PRK03080        108 DVVKQLKLEDPRVLEADYGSLPDLSAVD----F-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFAL--  178 (378)
T ss_pred             HHHhhcCCCCceEeccCCCCCCCHhhcC----C-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccC--
Confidence             3467899 9999998877788887743    2 567899999999999999999999  889999999999764443  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC---------C-CCccCCC
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV---------S-PTVAGSR  389 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~---------~-~~~~gsr  389 (438)
                               ++|+..  +|++++++|||+++|+|+|+++++++.+.+.. .....|....+.         . ....++.
T Consensus       179 ---------pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  246 (378)
T PRK03080        179 ---------PLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLE-SYTPARPIPKFFRLTKGGKAIENSFKGQTI  246 (378)
T ss_pred             ---------CCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhh-cccCCCCCchhheeccchHHhhhhhcCCcc
Confidence                     355553  89999999999999999999999865443211 111112111010         0 0111222


Q ss_pred             ---CCchHHHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          390 ---PGGLIAGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       390 ---~~~~ia~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                         +-..+.++.++++++-+. |++++.++..++++++++.|++++++++
T Consensus       247 ~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~  296 (378)
T PRK03080        247 NTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATP  296 (378)
T ss_pred             cCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence               223345557799998887 8999999999999999999999876654

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=3.6e-19  Score=179.75  Aligned_cols=217  Identities=17%  Similarity=0.148  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIK  249 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~  249 (438)
                      +++.+.++++.|.+. .       +++++|++|+.+++.++.     ++|   ++|+++.+.|..    +...+...|++
T Consensus        63 ~~Le~~lA~l~g~~~-~-------v~~~sG~~Ai~~~l~all-----~pG---D~Vvv~~p~Y~~t~~~~~~~~~~~g~~  126 (405)
T PRK08776         63 DLLGEALAELEGGAG-G-------VITATGMGAINLVLNALL-----QPG---DTLVVPHDAYGGSWRLFNALAKKGHFA  126 (405)
T ss_pred             HHHHHHHHHHhCCCc-e-------EEEcCHHHHHHHHHHHHh-----CCC---CEEEEccCCchHHHHHHHHHHHhcCcE
Confidence            345567888888742 2       788888999999888875     377   899999999887    44555666888


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      ++.++.     .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+....         ..+
T Consensus       127 v~~v~~-----~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~---------~~p  192 (405)
T PRK08776        127 LITADL-----TDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPAL---------QKP  192 (405)
T ss_pred             EEEECC-----CCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccccc---------CCc
Confidence            888875     389999999999999999999999999999999999999999999999999864321         112


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      +   ..|+|++..|+||++++|.+  .|+++.+++++.+...... ...          |....  ...+|+.+  .|.+
T Consensus       193 l---~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~-~~~----------g~~~s--~~~a~l~~--~gl~  254 (405)
T PRK08776        193 L---EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWA-NAL----------GLTGS--PFDAFLTL--RGLR  254 (405)
T ss_pred             c---cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHH-Hhc----------CCCCC--HHHHHHHH--hhhC
Confidence            3   25889999999999777755  5777776665543321111 001          11111  23566665  4667


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .++.+.++..+++..+.+.|++.|.++-+.|
T Consensus       255 tl~~r~~~~~~na~~la~~L~~~p~v~~V~y  285 (405)
T PRK08776        255 TLDARLRVHQENADAIAALLDGHAAVNQVYY  285 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence            8899999999999999999999998765443

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.83  E-value=7.1e-19  Score=176.71  Aligned_cols=233  Identities=15%  Similarity=0.102  Sum_probs=166.9

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      .|...++|+    .+++++|.+.      +  ++|+|||+|+.+++.++.-    ++|   ++|+++.++|.+...++..
T Consensus        32 g~~~~~le~----~la~~~g~~~------~--v~~~sgt~al~lal~al~~----~~G---d~Viv~~~~~~~~~~~~~~   92 (379)
T PRK11658         32 GPKNQALEQ----AFCQLTGNQH------A--IAVSSATAGMHITLMALGI----GPG---DEVITPSLTWVSTLNMIVL   92 (379)
T ss_pred             CHhHHHHHH----HHHHHhCCCe------E--EEECCHHHHHHHHHHHcCC----CCC---CEEEECCCcHHHHHHHHHH
Confidence            344555554    6888888863      2  7899999999999988721    367   8999999999999999999


Q ss_pred             cCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          246 FNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       246 ~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      .|++++.+|+++ ++.+|+++++++++++|++|+.++   ++|...|+++|.++|+++|+++++|++++.+...    .|
T Consensus        93 ~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~~~~---~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~----~~  165 (379)
T PRK11658         93 LGATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPVH---YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYY----KG  165 (379)
T ss_pred             cCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeE----CC
Confidence            999999999986 567999999999999999887554   5899999999999999999999999998633321    11


Q ss_pred             CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc-ccccCCCcc-----C-CC----CccCCCCCch
Q 013675          325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA-VTEWSGGLY-----V-SP----TVAGSRPGGL  393 (438)
Q Consensus       325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~-~~~~~g~~~-----~-~~----~~~gsr~~~~  393 (438)
                           ......|+++++++.+|.+.++. .|+++.+++++....... ...+....+     . .+    ...|....  
T Consensus       166 -----~~~g~~g~~~~Sf~~~K~l~~g~-GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~--  237 (379)
T PRK11658        166 -----RHIGARGTAIFSFHAIKNITCAE-GGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYN--  237 (379)
T ss_pred             -----eecCCCCCEEEeCCCCCcCcccC-ceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccC--
Confidence                 12234567889999999875554 466666666654322111 011110000     0 00    01122111  


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      +..+-+++.....+++++..++..++++++.+.|+++|.
T Consensus       238 ~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~  276 (379)
T PRK11658        238 LADINAAIALVQLAKLEALNARRREIAARYLQALADLPF  276 (379)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            225556666666788999999999999999999998764

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.83  E-value=3.3e-19  Score=178.81  Aligned_cols=216  Identities=18%  Similarity=0.195  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~Gi  248 (438)
                      .+++.+.+++++|.+.      +  +++++|+.|+.+++. +.     ++|   ++|+++...|.+...    .+..+|+
T Consensus        49 ~~~le~~la~l~g~~~------~--l~~~sG~~al~~~l~-ll-----~~G---d~Vl~~~~~y~~~~~~~~~~~~~~G~  111 (378)
T TIGR01329        49 RTALESLLAKLDKADR------A--FAFSSGMAALDVITR-LL-----NNG---DEIIAGDDLYGGTDRLLTQVVPRSGV  111 (378)
T ss_pred             HHHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHH-Hh-----CCC---CEEEEcCCCchHHHHHHHHHHHHcCc
Confidence            4456667999999842      2  677778888776554 32     367   899999999987654    4566799


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +++.++++     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|++++||++++....         ..
T Consensus       112 ~v~~vd~~-----d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~---------~~  177 (378)
T TIGR01329       112 VVVHVDTT-----DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL---------CN  177 (378)
T ss_pred             EEEEeCCC-----CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc---------CC
Confidence            99999874     89999999999999999999999999999999999999999999999999854332         11


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                      ++   ..|+|+++.|+|||+++|.+  .|+++++++.+.+.......  .+         |......  .+|..+  .+.
T Consensus       178 ~l---~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~--~~---------G~~~~~~--~a~l~~--~~l  239 (378)
T TIGR01329       178 PL---ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN--ST---------GSGLAPF--DCWLLL--RGI  239 (378)
T ss_pred             hh---hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH--hc---------CCcCCHH--HHHHHH--ccC
Confidence            23   34889999999999888877  88888876654332211110  01         1111111  334433  455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMFLPPL  437 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l  437 (438)
                      +.+..+.++..+++..+.+.|++.|.++-++
T Consensus       240 ~tl~~R~e~~~~na~~la~~L~~~~~v~~v~  270 (378)
T TIGR01329       240 KTLAIRIEKQQENARAIAMFLSTHPRVKKVR  270 (378)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence            7788889999999999999999988875443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.83  E-value=3.7e-19  Score=179.14  Aligned_cols=216  Identities=23%  Similarity=0.236  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi  248 (438)
                      .+++.+.+++++|.+.      +  ++|+||++|+..++.++.     ++|   ++|+++...|.+..    +.+..+|+
T Consensus        63 ~~~le~~la~l~g~~~------~--v~~ssG~~Ai~~al~al~-----~~G---d~Vi~~~~~y~~t~~~~~~~~~~~G~  126 (390)
T PRK08133         63 VTMFQERLAALEGAEA------C--VATASGMAAILAVVMALL-----QAG---DHVVSSRSLFGSTVSLFEKIFARFGI  126 (390)
T ss_pred             HHHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEccCcchhHHHHHHHHHHHcCc
Confidence            3445567899999753      3  789999999999988875     367   89999999887643    45667899


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +++.++++     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++....   +     . 
T Consensus       127 ~v~~vd~~-----d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~---~-----~-  192 (390)
T PRK08133        127 ETTFVDLT-----DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPAL---Q-----Q-  192 (390)
T ss_pred             EEEEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCccccc---C-----C-
Confidence            99999875     79999999999999999999999999999999999999999999999999754322   0     1 


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCC--c-EEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKG--T-SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g--~-g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                      +   ...|+|+++.|+||++ ++.|  . |+++.+ ++..........           ..|....  ...+|.++  .|
T Consensus       193 p---l~~g~Divv~S~sK~~-~g~g~~~GG~vv~~-~~~~~~~~~~~~-----------~~g~~~~--~~~a~~~l--~g  252 (390)
T PRK08133        193 P---LKLGADVVIHSATKYL-DGQGRVLGGAVVGS-KELMEEVFGFLR-----------TAGPTLS--PFNAWVFL--KG  252 (390)
T ss_pred             c---hhhCCcEEEeecceee-cCCcceEeEEEEcC-HHHHHHHHHHHH-----------HhCCCCC--HHHHHHHH--cc
Confidence            2   2347899999999994 5544  4 554444 433221111000           0111111  12456555  35


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .+.+..+.++..+++..+.+.|++.|+++-+.|
T Consensus       253 l~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~y  285 (390)
T PRK08133        253 LETLSLRMEAHSANALALAEWLEAHPGVERVFY  285 (390)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence            567888888999999999999999998876554

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=3.3e-19  Score=178.65  Aligned_cols=221  Identities=18%  Similarity=0.111  Sum_probs=164.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH---
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA---  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a---  242 (438)
                      .|....+|+    .++++.|.+  .    +  ++|+||++|+.+++.++.     ++|   ++|+++.+.|.+....   
T Consensus        52 npt~~~Le~----~lA~leg~e--~----i--vvt~gg~~Ai~~~l~all-----~~G---d~Il~~~~~y~~~~~~~~~  111 (388)
T PRK08861         52 NPNRGLLEQ----TLSELESGK--G----A--VVTNCGTSALNLWVSALL-----GPD---DLIVAPHDCYGGTYRLFNT  111 (388)
T ss_pred             CchHHHHHH----HHHHHhCCC--e----E--EEECCHHHHHHHHHHHHc-----CCC---CEEEEcCCchHHHHHHHHH
Confidence            344455554    688888853  2    4  899999999999998875     377   8999999998864433   


Q ss_pred             -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                       ....|++++.++.     .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.++..   
T Consensus       112 ~~~~~gi~v~~vd~-----~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~---  183 (388)
T PRK08861        112 RANKGDFKVQFVDQ-----SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQ---  183 (388)
T ss_pred             HHhcCCeEEEEECC-----CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccC---
Confidence             3334788888763     4899999999999999999999999999999999999999999999999998754321   


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                           . ++   ..|+|+++.|+|||+.||.+  .|+++.+++++.+...... ...          |.-..  ...+|.
T Consensus       184 -----~-pl---~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~-~~~----------G~~~~--p~~a~l  241 (388)
T PRK08861        184 -----K-PL---ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWG-NCI----------GATGT--PFDSYM  241 (388)
T ss_pred             -----C-Cc---ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHH-hcc----------CCCCC--hHHHHH
Confidence                 1 23   34899999999999888765  5766666654432211111 111          11111  125665


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .+  .|.+-+.-+.++..++|..+++.|++.|.++-+.|
T Consensus       242 ~~--rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~y  278 (388)
T PRK08861        242 TL--RGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYH  278 (388)
T ss_pred             HH--hcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence            55  56788889999999999999999999998865544

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.83  E-value=1.3e-18  Score=175.74  Aligned_cols=243  Identities=19%  Similarity=0.184  Sum_probs=171.0

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      .|....+..++++.+.+++.+..|.  ++++    +  ++|+|+++|+..++.++..     +|   ++|+++.+.|..+
T Consensus        63 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~----i--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~p~y~~~  128 (393)
T PRK05764         63 KYTPAAGIPELREAIAAKLKRDNGLDYDPSQ----V--IVTTGAKQALYNAFMALLD-----PG---DEVIIPAPYWVSY  128 (393)
T ss_pred             CcCCCCChHHHHHHHHHHHHHHhCCCCCHHH----E--EEeCCcHHHHHHHHHHhcC-----CC---CEEEecCCCCcch
Confidence            3545567778888888888777664  4443    6  8999999999998888753     66   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ..+++.+|++++.+|+++  ++.+|+++++++++++++++++++|+||||.+.+   +++|.++|++||+++++|.+|+.
T Consensus       129 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~  208 (393)
T PRK05764        129 PEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEK  208 (393)
T ss_pred             HHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccc
Confidence            999999999999999974  5789999999999889999999999999999865   78999999999999999999976


Q ss_pred             hhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      +...  .........+.....+.+++..++.|.+ +.+|  +|+++.+ +++.+........+           +.... 
T Consensus       209 ~~~~--~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~i~~~-~~~~~~~~~~~~~~-----------~~~~~-  272 (393)
T PRK05764        209 LVYD--GAEFTSIASLSPELRDRTITVNGFSKAY-AMTGWRLGYAAGP-KELIKAMSKLQSHS-----------TSNPT-  272 (393)
T ss_pred             eeeC--CCCcccHHHcCCCCcCCEEEEecCcccc-cCccceeEEEecC-HHHHHHHHHHHhhc-----------ccCCC-
Confidence            5431  0000001011112234577888899994 5445  7887644 44433211111000           00111 


Q ss_pred             hHHHHHHHHHHHc--HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          393 LIAGAWAALMSLG--QEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       393 ~ia~~~aal~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                       ..+++++...+.  .+.+++..++..++++.+.+.|++++++.+
T Consensus       273 -~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  316 (393)
T PRK05764        273 -SIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLEC  316 (393)
T ss_pred             -hHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence             124444444442  455667777788888999999998877653

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.83  E-value=6.7e-19  Score=174.70  Aligned_cols=262  Identities=19%  Similarity=0.147  Sum_probs=175.0

Q ss_pred             eeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHH
Q 013675          131 SGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLA  210 (438)
Q Consensus       131 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~a  210 (438)
                      +|.-|.|....+.+.+.+.+.+..+.+ +...+....+.....+++++.+++++|.+.      .  +++++||+++..+
T Consensus         7 ~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~~~~~------~--iv~~sg~~a~~~~   77 (349)
T cd06454           7 CSNDYLGLANHPEVIEAAKEALDKYGV-GAGGSRLISGTSDLHEELEEELAEFHGKEA------A--LVFSSGYAANDGV   77 (349)
T ss_pred             ccCCccccCCCHHHHHHHHHHHHHhCC-CCCCcCeecCCchHHHHHHHHHHHHhCCCC------E--EEeccHHHHHHHH
Confidence            344455554322355555666654322 212222222445566778888999999853      2  6777889999988


Q ss_pred             HHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-----CcEEEEEecCCCC
Q 013675          211 VKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-----NTVLIVGSAPGFP  285 (438)
Q Consensus       211 l~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-----~t~~vv~~~~~~~  285 (438)
                      ++++.     .+|   ++|+++.+.|+++...++..|++++.++.     +|.+++++++++     +++++++++++|+
T Consensus        78 ~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~  144 (349)
T cd06454          78 LSTLA-----GKG---DLIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSM  144 (349)
T ss_pred             HHHhc-----CCC---CEEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccC
Confidence            87765     367   89999999999999999999999988763     478889988874     5789999999999


Q ss_pred             CccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc
Q 013675          286 HGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR  365 (438)
Q Consensus       286 tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~  365 (438)
                      +|.+.|+++|+++|+++|+++++|++++.+..+.   .+...+.++....+.|+++.++||+ +++.| |+++.+ +++.
T Consensus       145 tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~---~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~g-G~i~~~-~~~~  218 (349)
T cd06454         145 DGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGP---HGRGVEEFGGLTDDVDIIMGTLGKA-FGAVG-GYIAGS-KELI  218 (349)
T ss_pred             CCCccCHHHHHHHHHHcCCEEEEEccccccccCC---CCCChhhhccccccCcEEEeechhh-hcccC-CEEECC-HHHH
Confidence            9999999999999999999999999986433321   0100112333455789999999999 55555 665544 4443


Q ss_pred             ccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          366 KHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       366 ~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +........+        ...++.+...++++.++++.+..  +++..++..++++++.+.|+++
T Consensus       219 ~~~~~~~~~~--------~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~  273 (349)
T cd06454         219 DYLRSYARGF--------IFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL  273 (349)
T ss_pred             HHHHHhchhh--------hccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc
Confidence            2211111111        01122223335566667765532  4667888899999999999875

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=4.2e-19  Score=180.28  Aligned_cols=229  Identities=14%  Similarity=0.101  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi  248 (438)
                      .+++.+.++++.|.+..        +++++|+.|+.+++.++.     ++|   ++||++...|.+..    +.+..+|+
T Consensus        71 ~~~le~~la~l~g~~~~--------v~fsSG~~Ai~~al~~ll-----~~G---d~VI~~~~~y~~t~~~~~~~l~~~Gi  134 (437)
T PRK05613         71 VEALENRIASLEGGVHA--------VAFASGQAAETAAILNLA-----GAG---DHIVTSPRLYGGTETLFLVTLNRLGI  134 (437)
T ss_pred             HHHHHHHHHHHhCCCeE--------EEeCCHHHHHHHHHHHhc-----CCC---CEEEECCCccHHHHHHHHHHHHhcCe
Confidence            44555679999998522        677777799988887764     367   89999999998863    45577899


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +++.++ +++   |+++++++|+++|++|++.+++||+|.+.|+++|+++|+++|++++||++++.+..           
T Consensus       135 ~v~~vd-~~~---d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-----------  199 (437)
T PRK05613        135 EVTFVE-NPD---DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-----------  199 (437)
T ss_pred             EEEEEC-CCC---CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-----------
Confidence            999998 332   89999999999999999999999999999999999999999999999999754322           


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccc---------cchhcccccCCCc-----cCC----------
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRK---------HQFVAVTEWSGGL-----YVS----------  382 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~---------~~~~~~~~~~g~~-----~~~----------  382 (438)
                       ++....|+|++++|+||| ++|.|  .|.+++.++....         ......+++....     ...          
T Consensus       200 -~~p~~~GaDivv~S~~K~-l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (437)
T PRK05613        200 -VRPLELGADVVVASLTKF-YTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAG  277 (437)
T ss_pred             -cChHHhCCCEEEeeccce-ecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHH
Confidence             223346899999999999 46554  3555553322110         0000000000000     000          


Q ss_pred             -CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          383 -PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       383 -~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                       ....|......  .+|..+  .|.+.+.-+.++..++|..+++.|+++|.++-+.|
T Consensus       278 ~~~~~G~~~~p~--~a~l~~--rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~y  330 (437)
T PRK05613        278 LLRDTGATLSPF--NAWVTA--QGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNF  330 (437)
T ss_pred             HHHhcCCCCCHH--HHHHHH--cccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEEC
Confidence             00012222222  455554  56788899999999999999999999998865544

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.82  E-value=7.8e-20  Score=182.13  Aligned_cols=236  Identities=16%  Similarity=0.083  Sum_probs=167.7

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCC-hHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSG-GTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~g-gt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      +.+.++.+++++.+++++|.+.+.   ++  ++|+| +|+|+.+++.++..  ..++|   ++|++....|- +.+.++.
T Consensus        40 ~~~~~~~~~~r~~l~~l~~~~~~~---~v--vf~~gs~T~a~~~~~~~l~~--~~~~~---~~i~~g~~~~~-~~~~a~~  108 (355)
T cd00611          40 KDFEAIVNEAESDLRELLNIPDNY---KV--LFLQGGATGQFAAVPLNLLG--DKGTA---DYVVTGAWSAK-AAKEAKR  108 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCc---eE--EEEcCCchHHHHHHHHhcCC--CCCeE---EEEECCHHHHH-HHHHHHh
Confidence            667788899999999999985433   25  88877 99999999998742  01133   55555333332 2446788


Q ss_pred             cCcEEEEeeCCCCCcc-C-HHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          246 FNIKLWRVPVDKEFRA-D-VKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       246 ~Gi~v~~v~~~~~~~~-d-~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      .|++++.+++++++.. + ++..+..++++|++|.++|.+|.||.+.+     ++++.||+.++||++++.+..      
T Consensus       109 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~------  177 (355)
T cd00611         109 YGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSR------  177 (355)
T ss_pred             cCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCC------
Confidence            8999999998765433 5 34444557788999999999999999822     455669999999999754443      


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC--CccCCCCccCCCCCchHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG--GLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g--~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                           ++|....++  +..++||+ ++|+|+|+++++++.+.+.... .+.+..  .........|+.+...++++.+++
T Consensus       178 -----~idv~~~~~--~~ss~~K~-lGP~G~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal  248 (355)
T cd00611         178 -----PIDVSKFGV--IYAGAQKN-LGPAGVTVVIVRKDLLGKARKI-TPSMLNYKTHADNNSLYNTPPTFAIYMMGLVL  248 (355)
T ss_pred             -----CCCHHHhCE--EEeecccc-cCCCceEEEEECHHHHhhcccC-CCCcccHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence                 466665554  44668997 6899999999987644321111 111100  000111124666666789999999


Q ss_pred             HHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          402 MSLGQE-GYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       402 ~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      +++-.+ |++.+.++..++++++++.|+++||+
T Consensus       249 ~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl  281 (355)
T cd00611         249 KWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF  281 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999888 79999999999999999999999886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=161.61  Aligned_cols=247  Identities=16%  Similarity=0.194  Sum_probs=196.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~  240 (438)
                      ...+|.+.++.+++.+-+...|....+.   .+  ++...|+.+...|+.....     +|   |++++-...-.+  +.
T Consensus        42 gh~sPe~~qIm~~v~egikyVFkT~n~~---tf--~isgsGh~g~E~al~N~le-----Pg---d~vLv~~~G~wg~ra~  108 (385)
T KOG2862|consen   42 GHMSPEFVQIMDEVLEGIKYVFKTANAQ---TF--VISGSGHSGWEAALVNLLE-----PG---DNVLVVSTGTWGQRAA  108 (385)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhccCCCc---eE--EEecCCcchHHHHHHhhcC-----CC---CeEEEEEechHHHHHH
Confidence            3468899999999999999999887654   13  6777888888888877664     78   888877766444  66


Q ss_pred             HHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      ..++.+|++|..|+.+......++.+++++.. ++++++++++.+.||+..| ++.+.++||+|++.++||++.+     
T Consensus       109 D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaS-----  183 (385)
T KOG2862|consen  109 DCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVAS-----  183 (385)
T ss_pred             HHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhh-----
Confidence            78899999999999888888999999999986 4789999999999999999 7888999999999999999843     


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc--------chhcccccCCCcc---CCC-Ccc
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH--------QFVAVTEWSGGLY---VSP-TVA  386 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~--------~~~~~~~~~g~~~---~~~-~~~  386 (438)
                          .|.  .+|.+..+|||+.-..++|.+.+|.|.+.+.++++.....        .+++...|.+..+   ..+ ...
T Consensus       184 ----lgg--t~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yh  257 (385)
T KOG2862|consen  184 ----LGG--TEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYH  257 (385)
T ss_pred             ----cCC--ccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccc
Confidence                332  2688899999999999999999999999988877643221        1222222222211   111 122


Q ss_pred             CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      -+.+-.+++++-+||..+-++|+++++++..+++++++..|++. |++
T Consensus       258 hT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq  304 (385)
T KOG2862|consen  258 HTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQ  304 (385)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Ccc
Confidence            34556678999999999999999999999999999999999986 554

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.82  E-value=7.6e-19  Score=176.81  Aligned_cols=216  Identities=21%  Similarity=0.218  Sum_probs=159.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----HhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----~~~~Gi~v  250 (438)
                      ++++.++++.|.+..        +.+++|++|+.+++.++.     ++|   ++|+++.+.|.+....    +..+|+++
T Consensus        65 ~Le~~lA~~~g~~~~--------i~~~sG~~Ai~~~l~all-----~~G---d~Vl~~~~~y~~t~~~~~~~~~~~gi~~  128 (388)
T PRK07811         65 ALEEQLAALEGGAYG--------RAFSSGMAATDCLLRAVL-----RPG---DHIVIPNDAYGGTFRLIDKVFTRWGVEY  128 (388)
T ss_pred             HHHHHHHHHhCCCce--------EEeCCHHHHHHHHHHHHh-----CCC---CEEEEcCCCchHHHHHHHHhCcCCCeEE
Confidence            344468889988753        566778999999998885     377   8999999999864433    33358888


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.++.     .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+...        . ++
T Consensus       129 ~~~d~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~--------~-p~  194 (388)
T PRK07811        129 TPVDL-----SDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQ--------Q-PL  194 (388)
T ss_pred             EEeCC-----CCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccC--------C-ch
Confidence            88775     3899999999999999999999999999999999999999999999999998754321        1 22


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                         ..|+|+++.|++|++.+|.+  .|+++.+++++.+..... ....|.          ...  ...+|.+++  +.+.
T Consensus       195 ---~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~-~~~~g~----------~~s--~~~a~l~~~--~L~t  256 (388)
T PRK07811        195 ---ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFL-QNGAGA----------VPG--PFDAYLTLR--GLKT  256 (388)
T ss_pred             ---hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHH-HHhcCC----------CCC--HHHHHHHHh--ccCc
Confidence               24789999999999766654  577777766543322111 011111          111  124455553  3455


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +..+.++..++++.+++.|++.|+++-+.|
T Consensus       257 l~~R~~~~~~na~~la~~L~~~p~v~~V~y  286 (388)
T PRK07811        257 LAVRMDRHSENAEAVAEFLAGHPEVSTVLY  286 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence            778888899999999999999998876554

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.82  E-value=1.9e-18  Score=169.58  Aligned_cols=234  Identities=21%  Similarity=0.133  Sum_probs=175.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      .|.++++|+    ++++++|.+..        +.+++||.|+.++++++.    -++|   |+||+|+.++.+...++-+
T Consensus        33 G~~v~~FE~----~~ae~~G~k~a--------va~~sgT~AL~laL~al~----ig~G---DeVI~ps~TfvATan~i~~   93 (374)
T COG0399          33 GPFVRRFEQ----AFAEYLGVKYA--------VAVSSGTAALHLALLALA----IGPG---DEVIVPSFTFVATANAVLL   93 (374)
T ss_pred             ChHHHHHHH----HHHHHhCCCeE--------EEecChHHHHHHHHHhcC----CCCC---CEEEecCCchHHHHHHHHH
Confidence            566666666    68999999853        799999999999999654    2477   9999999999999999999


Q ss_pred             cCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          246 FNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       246 ~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      .|++++.|++|+ ++.+|++.+|++|+++|++|+..|-   .|...|+++|.++|++||++++.|+|++         +|
T Consensus        94 ~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~~l~vIEDaAqa---------~G  161 (374)
T COG0399          94 VGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRHGLPVIEDAAQA---------HG  161 (374)
T ss_pred             cCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHcCCeEEEEcchh---------cc
Confidence            999999999996 7999999999999999999998886   8999999999999999999999999964         34


Q ss_pred             CCCCCCccCCCC----ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC---ccCCCCccCCCCCchHHHH
Q 013675          325 YPIPPFDFSVQG----VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG---LYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       325 ~~~p~~~~~~~g----vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~---~~~~~~~~gsr~~~~ia~~  397 (438)
                      .   .++.+..|    +-++|+.+.|.+-+. ..|+++++|+++.+............   ........|....  +-.+
T Consensus       162 a---~y~gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~r--m~~i  235 (374)
T COG0399         162 A---TYKGKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYR--LTEI  235 (374)
T ss_pred             C---eecCcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccC--HHHH
Confidence            3   23333333    456777777885444 56888888877655432221111000   0001111222221  2244


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      -+++.....+.+++..++..+++++..+.|++++++.++
T Consensus       236 qAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p  274 (374)
T COG0399         236 QAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLP  274 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence            555555556888999999999999999999998876654

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=8e-19  Score=176.73  Aligned_cols=214  Identities=17%  Similarity=0.200  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----HHHHhhcCcE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----DKAAQYFNIK  249 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~~a~~~~Gi~  249 (438)
                      +++.+.++++.|.+. .       +++++|+.|+.+++. +.     ++|   ++|+++.+.|.+.    .+.++.+|++
T Consensus        57 ~~le~~lA~l~g~~~-~-------v~~~sG~~ai~~~l~-~l-----~~G---d~Vlv~~~~y~~~~~~~~~~~~~~G~~  119 (390)
T PRK08064         57 EALEDIIAELEGGTK-G-------FAFASGMAAISTAFL-LL-----SKG---DHVLISEDVYGGTYRMITEVLSRFGIE  119 (390)
T ss_pred             HHHHHHHHHHhCCCC-e-------EEECCHHHHHHHHHH-Hh-----CCC---CEEEEccCccchHHHHHHHHHHHcCCE
Confidence            344557999999873 2       566777888877775 22     367   8999999988753    3556678999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      ++.++.+     |+++++++++++|++|++++|+||+|.+.|+++|.++|+++|++++||++|+.+...        . +
T Consensus       120 v~~v~~~-----d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~--------~-~  185 (390)
T PRK08064        120 HTFVDMT-----NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQ--------K-P  185 (390)
T ss_pred             EEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCccccc--------C-c
Confidence            9999874     799999999999999999999999999999999999999999999999998754321        1 2


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      .   ..|+|+++.|+|||+.++.|  .|+++++++++.+........|..           -..  ...+|..+  .|.+
T Consensus       186 ~---~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~-----------~~~--~~~a~l~~--~gl~  247 (390)
T PRK08064        186 L---DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGA-----------VLG--VQDCWLVL--RGLK  247 (390)
T ss_pred             h---hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCC-----------CCC--HHHHHHHH--cccC
Confidence            2   34789999999999877876  487777765544332211111111           001  12455544  4555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      .+..+.++..+++..+.+.|++.|.+.-+
T Consensus       248 tl~~R~~~~~~~a~~la~~L~~~~~v~~v  276 (390)
T PRK08064        248 TLHVRLEHSSETANKIALYLQEHPKVQNV  276 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCcceE
Confidence            67788899999999999999998876543

>PLN02271 serine hydroxymethyltransferase

Probab=99.82  E-value=2e-18  Score=175.21  Aligned_cols=246  Identities=13%  Similarity=0.117  Sum_probs=179.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccce--eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCG--NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-  240 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g--~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-  240 (438)
                      .....+.++|..+++...++||++..+     +|  +-..+|+.|++.++.++.     ++|   |+|+..+..|.... 
T Consensus       187 ~G~~~iD~iE~la~era~~lF~~~~~~-----~gaNVQp~SGs~AN~aV~~ALl-----~PG---D~IL~ldl~~GGHls  253 (586)
T PLN02271        187 TGNQYIDQIERLCCERALAAFGLDSEK-----WGVNVQPYSCTSANFAVYTGLL-----LPG---DRIMGLDSPSGGHMS  253 (586)
T ss_pred             CCChhHHHHHHHHHHHHHHHhCCcccc-----cccceeeccHHHHHHHHHHHhc-----CCC---CEEEEecCCCCCchh
Confidence            344567889999999999999988743     22  566799999999999886     488   99998666544322 


Q ss_pred             --------HHHhhcCcEEEEee--CC-CCCccCHHHHHH-hhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE
Q 013675          241 --------KAAQYFNIKLWRVP--VD-KEFRADVKAIKK-YINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV  308 (438)
Q Consensus       241 --------~a~~~~Gi~v~~v~--~~-~~~~~d~~~Le~-~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhV  308 (438)
                              +.+...|+.+..+|  +| +++.+|.+++++ +...+|++|++.+..++  ...|+++|+++|+++|+++++
T Consensus       254 hg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~Lmv  331 (586)
T PLN02271        254 HGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMC  331 (586)
T ss_pred             cccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEE
Confidence                    23455676666665  65 489999999998 66789999999888877  678999999999999999999


Q ss_pred             eccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc----c----
Q 013675          309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL----Y----  380 (438)
Q Consensus       309 D~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~----~----  380 (438)
                      |+++..++++    .|.    +..-..++|++++++|||+.||.| |+++++++. ..........|.+..    +    
T Consensus       332 D~AH~aGLIa----~g~----~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~-~~~~~g~~gs~s~~~~~~d~~~kI  401 (586)
T PLN02271        332 DMAHISGLVA----AKE----CVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGP-KLRKQGMLLSHGDDNSHYDFEEKI  401 (586)
T ss_pred             ECcccccccc----cCc----CCCCCcCCcEEEeCCcccCCCCCc-eEEEecccc-cccccCCccccccccccHHHHHHh
Confidence            9998877764    121    111223689999999999999999 888887532 111000001111110    0    


Q ss_pred             ---CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          381 ---VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       381 ---~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                         .-|.++|......++++..+++......|++..+++.++|+.|++.|.+. |+++
T Consensus       402 ~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~v  458 (586)
T PLN02271        402 NFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRL  458 (586)
T ss_pred             hcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeE
Confidence               12344555555558899999988777788999999999999999999876 6665

>PLN02509 cystathionine beta-lyase

Probab=99.82  E-value=9.6e-19  Score=178.34  Aligned_cols=218  Identities=17%  Similarity=0.190  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcC
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~G  247 (438)
                      ..+++.++++++.|.+.      .  +++++|+.++.+++ .+.     ++|   |+||++.+.|.+...    .+...|
T Consensus       134 t~~aLE~~lA~leg~e~------a--i~~~SG~aAi~~il-~ll-----~~G---D~VI~~~~~y~~t~~ll~~~l~~~G  196 (464)
T PLN02509        134 TRDALESLLAKLDKADR------A--FCFTSGMAALSAVT-HLI-----KNG---EEIVAGDDVYGGSDRLLSQVVPRSG  196 (464)
T ss_pred             HHHHHHHHHHHHhCCCE------E--EEeCcHHHHHHHHH-HHh-----CCC---CEEEEcCCchhhHHHHHHHHHHHCC
Confidence            35566678888887543      2  67788888775444 332     378   999999999988764    445679


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      ++++.++.     .|+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|++++||++++.+..      +  .
T Consensus       197 ~~v~~vd~-----~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~------~--~  263 (464)
T PLN02509        197 VVVKRVNT-----TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL------S--R  263 (464)
T ss_pred             eEEEEeCC-----CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc------C--C
Confidence            99998864     378999999999999999999999999999999999999999999999999864432      1  1


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                       +   ...|+|+++.|.+||+.++.+  .|++.++++.+....+.. ....          |+...  -..+|..+  .|
T Consensus       264 -p---l~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~-~~~~----------g~~l~--p~~A~l~l--r~  324 (464)
T PLN02509        264 -P---LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL-QNSE----------GSGLA--PFDCWLCL--RG  324 (464)
T ss_pred             -h---hhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHH-HHhc----------CCCcC--HHHHHHHH--hh
Confidence             1   234789999999999877766  677776665432221111 1111          11111  22466665  45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .+-+..++++..++++++.+.|+++|.++-+.|
T Consensus       325 L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~y  357 (464)
T PLN02509        325 IKTMALRIEKQQENARKIAMYLSSHPRVKKVYY  357 (464)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence            577889999999999999999999998875544

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=6.9e-19  Score=177.28  Aligned_cols=215  Identities=19%  Similarity=0.119  Sum_probs=162.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi~v  250 (438)
                      ++.+.++++.|.+.      +  ++++||++|+.+++.++.     ++|   |+|+++.+.|....    ..+..+|+++
T Consensus        69 ~Le~~lA~l~g~~~------~--l~~~sgt~Ai~~~l~al~-----~~G---D~Vl~~~~~y~~~~~~~~~~~~~~Gi~v  132 (394)
T PRK07050         69 ALAQRLAEIEGGRH------A--LLQPSGLAAISLVYFGLV-----KAG---DDVLIPDNAYGPNRDHGEWLARDFGITV  132 (394)
T ss_pred             HHHHHHHHHhCCCe------E--EEeccHHHHHHHHHHHHh-----CCC---CEEEEecCCcccHHHHHHHHHHhcCeEE
Confidence            44456888888642      4  899999999999999875     378   99999999998855    4567789999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.++..     +.++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+..            +
T Consensus       133 ~~vd~~-----~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~------------~  195 (394)
T PRK07050        133 RFYDPL-----IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLA------------F  195 (394)
T ss_pred             EEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccc------------c
Confidence            988753     45789999999999999999999999999999999999999999999999864332            2


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      +....|+|+++.|.+|+..+..+  .|+++++++++.+...... ...|.            +.....+|.+++  |.+.
T Consensus       196 ~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~-~~~G~------------~~~~~~a~l~lr--~l~t  260 (394)
T PRK07050        196 KPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLAR-MRLGI------------GVSADDCSLVLR--GLPS  260 (394)
T ss_pred             CHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHH-HhcCC------------CCCHHHHHHHHc--CCCc
Confidence            22334789999999999655554  5777777765433221111 11111            111235566663  4456


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPL  437 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l  437 (438)
                      +..+.++..+++.++.+.|++.|++.-+.
T Consensus       261 l~~Rl~~~~~~a~~la~~L~~~p~v~~v~  289 (394)
T PRK07050        261 LQVRLAAHDRSALEVAEWLKARPEIATVL  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence            77788999999999999999998876544

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=5.9e-19  Score=176.77  Aligned_cols=220  Identities=15%  Similarity=0.067  Sum_probs=163.1

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----  241 (438)
                      .|....+|+    .++++.|..  +    +  ++++||++|+..++.++.     ++|   |+|+++.+.|.+...    
T Consensus        60 npt~~~Le~----~iA~le~~~--~----~--~~~~sG~~Ai~~~l~all-----~~G---D~Vvv~~~~Y~~t~~l~~~  119 (394)
T PRK09028         60 TPTHFAFQA----AIVELEGGA--G----T--ALYPSGAAAISNALLSFL-----KAG---DHLLMVDSCYEPTRDLCDK  119 (394)
T ss_pred             CchHHHHHH----HHHHHhCCC--c----E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEECCCcHHHHHHHHH
Confidence            455555554    577777654  2    3  899999999999998875     378   999999999877664    


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      ....+|++++.++.+     |.++++++++++|++|++++|+||+|.+.|+++|+++||++|++++||++|+....    
T Consensus       120 ~l~~~Gi~v~~v~~~-----~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~----  190 (394)
T PRK09028        120 ILKGFGIETTYYDPM-----IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN----  190 (394)
T ss_pred             hhhhcceEEEEECCC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc----
Confidence            335578888887643     56889999999999999999999999999999999999999999999999875321    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                              ++....|+|++..|.|||++|+.+  .|++ +.+++..+..... ....          |.-...  ..+|.
T Consensus       191 --------~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~-~~~~~~~~~l~~~-~~~~----------G~~~~p--~~a~l  248 (394)
T PRK09028        191 --------SRPFEMGVDISIQAATKYIVGHSDVMLGTA-TANEKHWDQLREH-SYLM----------GQCTSP--DDVYL  248 (394)
T ss_pred             --------CCccccCceEEEEeCCeEecCCCCEEEEEE-ECCHHHHHHHHHH-HHhc----------CCCCCH--HHHHH
Confidence                    223356999999999999877743  4544 4554432211111 0111          211222  25666


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .+  .|.+.+.-+.++..++|..+++.|++.|.++-++|
T Consensus       249 ~~--rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~y  285 (394)
T PRK09028        249 AM--RGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRH  285 (394)
T ss_pred             HH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence            55  56678899999999999999999999998865544

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.82  E-value=5e-19  Score=178.20  Aligned_cols=216  Identities=19%  Similarity=0.187  Sum_probs=159.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v  250 (438)
                      ++.+.+++++|.+..        +++++|+.|+.+++.++.     ++|   ++|+++.+.|.+    +...+..+|+++
T Consensus        63 ~le~~lA~l~g~~~a--------v~~~sG~~Ai~~~l~al~-----~~G---d~Vi~~~~~y~~t~~~~~~~~~~~G~~~  126 (391)
T TIGR01328        63 NLEGRIAFLEGTEAA--------VATSSGMGAIAATLLTIL-----KAG---DHLISDECLYGCTFALLEHALTKFGIQV  126 (391)
T ss_pred             HHHHHHHHHhCCCcE--------EEECCHHHHHHHHHHHHh-----CCC---CEEEEecCcchHHHHHHHHHHhcCCeEE
Confidence            344469999998642        789999999998888764     367   899999987764    445566789999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.++++     |+++++++|+++|++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+...        . + 
T Consensus       127 ~~vd~~-----d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~--------~-~-  191 (391)
T TIGR01328       127 DFINMA-----IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLT--------N-P-  191 (391)
T ss_pred             EEECCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccC--------C-c-
Confidence            999875     899999999999999999999999999999999999999999999999998643221        1 2 


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhc-ccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVA-VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~-~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                        ...++|+++.|++|++.++.+  .|++ +.++++.+..... ...+          .|......  .+|.+++  +.+
T Consensus       192 --~~~g~Divv~S~sK~lgg~g~~~gG~v-~~~~~li~~l~~~~~~~~----------~g~~l~~~--~a~l~l~--~L~  254 (391)
T TIGR01328       192 --VALGVDVVVHSATKYIGGHGDVVAGLI-CGKAELLQQIRMVGIKDM----------TGSVISPF--DAWLILR--GLK  254 (391)
T ss_pred             --hhcCCCEEEccccccccCCCCceEEEE-EcCHHHHHHHHHHHHHhC----------CCCCCCcH--HHHHHHh--CcC
Confidence              234789999999999655543  4554 5555544322111 1111          12222222  3455553  445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .+..+.++..++++++.+.|++.|+++.++|
T Consensus       255 tl~~r~~~~~~na~~la~~L~~~p~v~~v~y  285 (391)
T TIGR01328       255 TLNIRMKRHSENAMKVAEYLKSHPAVEKVYY  285 (391)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            6678889999999999999999998876554

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.82  E-value=7.8e-19  Score=177.22  Aligned_cols=217  Identities=17%  Similarity=0.168  Sum_probs=157.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi~v  250 (438)
                      ++.+.+++++|.+..        .++++|+.++..++.+..     ++|   ++|+++.+.|.+..    ..+..+|+++
T Consensus        69 ~Le~~lA~l~G~~~~--------~~~~sG~~Ai~~~l~~~l-----~~G---d~Vl~~~~~y~~~~~~~~~~~~~~G~~v  132 (398)
T PRK07504         69 MFEKRMCALEGAEDA--------RATASGMAAVTAAILCQV-----KAG---DHVVAARALFGSCRYVVETLLPRYGIES  132 (398)
T ss_pred             HHHHHHHHHhCCCee--------eEecCHHHHHHHHHHHHh-----CCC---CEEEEcCCchhHHHHHHHHHHhhcCeEE
Confidence            444578899998754        467889999987776644     377   89999999888744    3445679999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.++     ..|+++++++|+++|++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+...        . +.
T Consensus       133 ~~vd-----~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~--------~-~~  198 (398)
T PRK07504        133 TLVD-----GLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQ--------K-PL  198 (398)
T ss_pred             EEEC-----CCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccC--------C-ch
Confidence            8886     26899999999999999999999999999999999999999999999999998643321        1 22


Q ss_pred             ccCCCCccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGY  409 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~  409 (438)
                         ..|+|+++.|+||++.++. ..|.+++.+++..........          ...|......  .+|.++  .+.+.+
T Consensus       199 ---~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~----------~~~g~~~s~~--~A~~~l--~~L~tl  261 (398)
T PRK07504        199 ---ELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYF----------RHTGPSLSPF--NAWTLL--KGLETL  261 (398)
T ss_pred             ---hhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHH----------HHhCCCCCHH--HHHHHH--hccchH
Confidence               3478999999999965542 244344444443321111000          0112222222  555655  455778


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          410 LENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      ..+.++..++++.+.+.|++.|+++-+.|
T Consensus       262 ~~R~~~~~~na~~la~~L~~~p~v~~v~y  290 (398)
T PRK07504        262 PVRVRQQTESAAAIADFLAGHPKVARVIY  290 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence            88999999999999999999998864443

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.82  E-value=7.7e-19  Score=176.40  Aligned_cols=220  Identities=17%  Similarity=0.124  Sum_probs=162.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH--
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA--  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~--  243 (438)
                      .|...++|+    .+++++|.+.      +  +++++|+.|+..++.++.     ++|   |+|+++.+.|.+....+  
T Consensus        52 np~~~~lE~----~lA~l~g~~~------~--l~~~sG~~Ai~~~l~~ll-----~~G---D~Vlv~~~~y~~~~~~~~~  111 (385)
T PRK08574         52 NPTLRPLEE----ALAKLEGGVD------A--LAFNSGMAAISTLFFSLL-----KAG---DRVVLPMEAYGTTLRLLKS  111 (385)
T ss_pred             CccHHHHHH----HHHHHhCCCc------E--EEeCCHHHHHHHHHHHHh-----CCC---CEEEEcCCCchhHHHHHHH
Confidence            345555554    6888998753      2  788999999999988765     377   99999999999877665  


Q ss_pred             -hhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          244 -QYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       244 -~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                       ...|++++.++      .|++++++++++ +|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.++.    
T Consensus       112 ~~~~g~~v~~~~------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~----  181 (385)
T PRK08574        112 LEKFGVKVVLAY------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLL----  181 (385)
T ss_pred             hhccCcEEEEEC------CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc----
Confidence             44588887764      368999999998 899999999999999999999999999999999999999864322    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                              ++....|+|+++.|++|++.+|.+  .|+++++++++.+...... ...          |.....  ..+|.
T Consensus       182 --------~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~-~~~----------g~~~~p--~~a~l  240 (385)
T PRK08574        182 --------YRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR-RRL----------GTIMQP--FEAYL  240 (385)
T ss_pred             --------CChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHH-Hhc----------CCCCCH--HHHHH
Confidence                    111235789999999999766654  4656776665433221111 111          111111  14455


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      ++  .|.+-+..+.++..+++.++.+.|++.|.++-+.|
T Consensus       241 ~l--~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~y  277 (385)
T PRK08574        241 VL--RGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYY  277 (385)
T ss_pred             HH--cccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEEC
Confidence            55  35566788899999999999999999998865544

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.82  E-value=3.4e-19  Score=176.10  Aligned_cols=224  Identities=24%  Similarity=0.252  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---HHhhcCc
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---AAQYFNI  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---a~~~~Gi  248 (438)
                      ...++++.+++++| ++.     +  ++++|||+++.+++.++.     .+|   ++|+++.+.|.+..+   .+...|+
T Consensus        33 ~~~~l~~~~a~~~g-~~~-----~--~~~~~gt~a~~~~~~~l~-----~~g---d~v~~~~~~~~~~~~~~~~~~~~g~   96 (338)
T cd06502          33 TTAKLEARAAELFG-KEA-----A--LFVPSGTAANQLALAAHT-----QPG---GSVICHETAHIYTDEAGAPEFLSGV   96 (338)
T ss_pred             HHHHHHHHHHHHhC-CCe-----E--EEecCchHHHHHHHHHhc-----CCC---CeEEEecCcceeeecCCcHHHHcCc
Confidence            34566678999999 332     3  899999999999888875     367   899999999988654   3556899


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhcc-------CcEEEEEecCCCCCcc--ccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINR-------NTVLIVGSAPGFPHGI--IDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~-------~t~~vv~~~~~~~tG~--iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      +++.+|.+. +.+|++++++++++       ++++|++++|+|+.|.  .+++++|+++|+++|+++|+|++|..+..  
T Consensus        97 ~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~--  173 (338)
T cd06502          97 KLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAA--  173 (338)
T ss_pred             eEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHH--
Confidence            999999864 78999999999975       7899999999997443  46688999999999999999999754322  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                       ...|.   .+.....++|+++.++||++..|.  |.+++.++++..........|.+.         .+....  .+++
T Consensus       174 -~~~~~---~~~~~~~~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~a  236 (338)
T cd06502         174 -AALGV---ALKTYKSGVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQAGGG---------MRQSGF--LAAA  236 (338)
T ss_pred             -HhcCC---CHHHHHhcCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHhCCC---------hhhHHH--HHHH
Confidence             11121   122223467999999999965554  334555555443321111111110         111112  3344


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      ++..+...++.+..++..++++++.+.|++++
T Consensus       237 ~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~  268 (338)
T cd06502         237 GLAALENDLWLRRLRHDHEMARRLAEALEELG  268 (338)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44445445677888899999999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.82  E-value=1.8e-19  Score=179.14  Aligned_cols=232  Identities=18%  Similarity=0.182  Sum_probs=167.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ...+..+..|+.||++..-       .+|+|+|.+|..++.++..     +|   ++|+++..+|-|+..++.+.|++++
T Consensus        67 ~I~eAe~~aA~~fGAd~t~-------flvnGsT~g~~a~i~a~~~-----~g---d~VLv~RN~HkSv~~alil~ga~Pv  131 (417)
T PF01276_consen   67 IIKEAEELAARAFGADKTF-------FLVNGSTSGNQAMIMALCR-----PG---DKVLVDRNCHKSVYNALILSGAIPV  131 (417)
T ss_dssp             HHHHHHHHHHHHHTESEEE-------EESSHHHHHHHHHHHHHTT-----TT---CEEEEETT--HHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHhcCCCeEE-------EEecCchHHHHHHHHHhcC-----CC---CEEEEcCCcHHHHHHHHHHcCCeEE
Confidence            3445666799999999763       7899999999999999874     78   9999999999999999999999999


Q ss_pred             EeeCCC-----CCccCH-----HHHHHhhccC-----cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675          252 RVPVDK-----EFRADV-----KAIKKYINRN-----TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       252 ~v~~~~-----~~~~d~-----~~Le~~I~~~-----t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      +++...     -+.+++     +.++++|+++     ++++++++||+ .|.+.|+++|+++|++++++|+||+|||+..
T Consensus       132 yi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~  210 (417)
T PF01276_consen  132 YIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHF  210 (417)
T ss_dssp             EEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTG
T ss_pred             EecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccc
Confidence            998742     234666     9999999864     23599999988 8999999999999999999999999998754


Q ss_pred             hhhhhhcCCCCCCCccCCCCcc-------EEEeCCCCCCCCCCCcEEEEEeccc-ccccchhcccccCCCccCCCCccCC
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVT-------SISVDVHKYGLAPKGTSVVLYRNRE-IRKHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvd-------sis~s~hK~~~~p~g~g~l~~r~~~-~~~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      . |..     . +-+....|+|       +++.|.||.+.+-..++++.+++.. +....+.......        ...|
T Consensus       211 ~-F~~-----l-p~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~--------~TTS  275 (417)
T PF01276_consen  211 G-FHP-----L-PRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMH--------QTTS  275 (417)
T ss_dssp             G-CSG-----G-GTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHH--------S-SS
T ss_pred             c-CCC-----C-ccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHH--------cCCC
Confidence            3 331     1 1223456778       9999999999999999999999876 3222211111100        1123


Q ss_pred             CCCchHHHHHHHHHHH-cHHHHHHHHHHHHHHHHHHHHHh---hcCCCccc
Q 013675          389 RPGGLIAGAWAALMSL-GQEGYLENTKAIMEVSESIQKGL---VLFPMFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~-g~~g~~~~~~~~~~~a~~l~~~L---~~~~g~~~  435 (438)
                      .+..+++++-.+.+++ +.+| ++..++..++++.++++|   .+++++++
T Consensus       276 PSY~lmASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~  325 (417)
T PF01276_consen  276 PSYPLMASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKV  325 (417)
T ss_dssp             --HHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEE
T ss_pred             hHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEec
Confidence            4445678888888877 5555 677788888889999998   55666553

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.81  E-value=1.9e-18  Score=171.78  Aligned_cols=233  Identities=18%  Similarity=0.068  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++++|.+.      +  +++++||+|+..++.+++.    ++|   ++|+++..+|.+...++...|++++.
T Consensus        20 ~~~~~~~la~~~~~~~------~--~~~~sgt~al~~~l~~l~~----~~g---d~vl~~~~~~~~~~~~~~~~g~~~~~   84 (352)
T cd00616          20 VREFEKAFAEYLGVKY------A--VAVSSGTAALHLALRALGI----GPG---DEVIVPSFTFVATANAILLLGATPVF   84 (352)
T ss_pred             HHHHHHHHHHHhCCCe------E--EEECCHHHHHHHHHHHcCC----CCC---CEEEeCCcchHHHHHHHHHcCCeEEE
Confidence            3345557888898642      3  7889999999999988731    256   89999999999999999999999999


Q ss_pred             eeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          253 VPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       253 v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      +++++ ++.+|+++++++++++|++|++++   ++|.+.|+++|.++|+++|+++++|++++.+..+    .+.   .. 
T Consensus        85 ~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~----~~~---~~-  153 (352)
T cd00616          85 VDIDPDTYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATY----KGR---KV-  153 (352)
T ss_pred             EecCCCcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeE----CCE---Ec-
Confidence            99987 889999999999998999998876   4899999999999999999999999998633321    000   00 


Q ss_pred             cCCCCccEEEeC--CCCCCCCCCCcEEEEEecccccccchhcccccCCCcc--CCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          332 FSVQGVTSISVD--VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY--VSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       332 ~~~~gvdsis~s--~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~--~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                       . ...|+.++|  .||++.+|. .|+++++++++.+.............+  ......|...+..  .+-+++.....+
T Consensus       154 -~-~~~d~~~~S~~~~K~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~~~~~l~  228 (352)
T cd00616         154 -G-TFGDAGAFSFHPTKNLTTGE-GGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLS--EIQAAIGLAQLE  228 (352)
T ss_pred             -c-cCcceeEEcCCCCCCCcccC-ceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcC--HHHHHHHHHHHH
Confidence             1 113555555  559963333 466677765544321111100000000  0001111111211  222222223456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      ++++..++..++++++.+.|+++|++++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~  257 (352)
T cd00616         229 KLDEIIARRREIAERYKELLADLPGIRLP  257 (352)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCccCC
Confidence            77888899999999999999999888753

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.81  E-value=1.2e-18  Score=174.97  Aligned_cols=216  Identities=18%  Similarity=0.146  Sum_probs=160.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----HhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----~~~~Gi~v  250 (438)
                      ++.+.++++.|.+  .    +  ++++||++++.+++.++.     ++|   |+|+++.+.|.+....    +...|+++
T Consensus        56 ~L~~~lA~l~g~~--~----~--i~~~sg~~Ai~~~l~~l~-----~~G---D~Vl~~~~~y~~~~~~~~~~~~~~gi~v  119 (386)
T PRK08045         56 VVQRALAELEGGA--G----A--VLTNTGMSAIHLVTTVFL-----KPG---DLLVAPHDCYGGSYRLFDSLAKRGCYRV  119 (386)
T ss_pred             HHHHHHHHHhCCC--e----E--EEECCHHHHHHHHHHHHc-----CCC---CEEEEcCCCcHHHHHHHHHHHhhCCeEE
Confidence            4455788888853  2    4  899999999999998765     377   8999999999864432    23345677


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      ..++     ..|+++++++++++|++|++++|+||+|.+.|+++|.++|+++|++++||++|+.+..+        . ++
T Consensus       120 ~~vd-----~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~--------~-pl  185 (386)
T PRK08045        120 LFVD-----QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQ--------N-PL  185 (386)
T ss_pred             EEeC-----CCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC--------C-ch
Confidence            7664     25899999999999999999999999999999999999999999999999998754321        1 22


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                         ..|+|++..|.|||+.|+.+  .|+++.+++++.+...... ...|.          -.  ....+|.+++  |.+-
T Consensus       186 ---~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~-~~~g~----------~~--~p~~~~l~~r--gl~t  247 (386)
T PRK08045        186 ---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWA-NNIGV----------TG--GAFDSYLLLR--GLRT  247 (386)
T ss_pred             ---hhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHH-HhcCC----------CC--CHHHHHHHHh--hhcc
Confidence               34789999999999877776  6777666655433221111 11111          11  1236677764  4466


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +..+.++..+++..+++.|++.|.++-+.|
T Consensus       248 l~~R~~~~~~na~~la~~L~~~p~v~~V~y  277 (386)
T PRK08045        248 LVPRMELAQRNAQAIVKYLQTQPLVKKLYH  277 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEeEEEC
Confidence            889999999999999999999998865544

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.81  E-value=1.7e-18  Score=173.41  Aligned_cols=219  Identities=21%  Similarity=0.162  Sum_probs=161.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----  241 (438)
                      .|...++|+    .+++++|.+.      .  +++++|++|+..++.++.     ++|   ++|+++...|.+...    
T Consensus        39 ~p~~~~le~----~la~l~g~~~------a--~~~~sG~~Ai~~~l~~l~-----~~g---d~Vl~~~~~y~~~~~~~~~   98 (369)
T cd00614          39 NPTVDALEK----KLAALEGGEA------A--LAFSSGMAAISTVLLALL-----KAG---DHVVASDDLYGGTYRLFER   98 (369)
T ss_pred             ChhHHHHHH----HHHHHHCCCC------E--EEEcCHHHHHHHHHHHHc-----CCC---CEEEECCCCcchHHHHHHH
Confidence            455555554    6888888753      2  788999999999999875     367   899999999887543    


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .+..+|++++.++.+     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+..    
T Consensus        99 ~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~----  169 (369)
T cd00614          99 LLPKLGIEVTFVDPD-----DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL----  169 (369)
T ss_pred             HHhhcCeEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc----
Confidence            455779999998865     69999999998999999999999999999999999999999999999999875432    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                           ..++   ..|+|+++.+.+|++.++..  .|+++.+++++.+........           .|....  ...+|+
T Consensus       170 -----~~~~---~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-----------~g~~~~--p~~a~~  228 (369)
T cd00614         170 -----QRPL---ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLA-----------LGTILS--PFDAWL  228 (369)
T ss_pred             -----CChh---hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHh-----------hCCCCC--HHHHHH
Confidence                 0122   34789999999999655432  677777653443322111110           111111  225666


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      +++.+  +.+..+.++..++++++.+.|++.|+++-+
T Consensus       229 ~l~~l--~tl~~r~~~~~~na~~la~~L~~~~~v~~V  263 (369)
T cd00614         229 LLRGL--KTLPLRMERHSENALKVAEFLEKHPKVERV  263 (369)
T ss_pred             HHcCC--CCHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence            65433  566778889999999999999999877543

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.81  E-value=1.8e-18  Score=175.74  Aligned_cols=232  Identities=18%  Similarity=0.179  Sum_probs=163.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDK  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~  241 (438)
                      .|....+|+    .++++.|.+.      .  ++|++|+.|+..++.++.     .+|   ++|+++.+.|..    +..
T Consensus        63 ~p~~~~Le~----~lA~leg~~~------a--l~~~sG~~Ai~~al~~ll-----~~G---D~Vlv~~~~y~~t~~~~~~  122 (431)
T PRK08248         63 NPTTDVFEK----RIAALEGGIG------A--LAVSSGQAAITYSILNIA-----SAG---DEIVSSSSLYGGTYNLFAH  122 (431)
T ss_pred             CchHHHHHH----HHHHHhCCCc------E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEccCchhhHHHHHHH
Confidence            444455554    6899998643      2  899999999999998865     377   899999988865    345


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .++.+|++++.++++     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++....    
T Consensus       123 ~~~~~Gv~v~~vd~~-----d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~----  193 (431)
T PRK08248        123 TLPKLGITVKFVDPS-----DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYL----  193 (431)
T ss_pred             HHHhCCEEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcccc----
Confidence            567789999999863     89999999999999999999999999999999999999999999999999863211    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC-cEEEEEeccccc--cc-ch----hcccccCCCccCC-----------
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIR--KH-QF----VAVTEWSGGLYVS-----------  382 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~--~~-~~----~~~~~~~g~~~~~-----------  382 (438)
                           ..++   ..|+|+++.+.|||+.+|.. +|.+++.+.+..  .. .+    ...++|.+..+..           
T Consensus       194 -----~~pl---~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (431)
T PRK08248        194 -----LRPI---EHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKA  265 (431)
T ss_pred             -----CChh---HcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHH
Confidence                 1122   46899999999999654432 566566433211  00 00    0011111110000           


Q ss_pred             ----CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          383 ----PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       383 ----~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                          ....|......  .+|..+  .|.+-+..+.++..++|..+++.|+++|+++-+.|
T Consensus       266 ~~~~~~~~G~~l~p~--~a~l~~--rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~y  321 (431)
T PRK08248        266 RVQLLRDLGAALSPF--NSFLLL--QGLETLHLRMERHSENALAVAKFLEEHEAVEWVSY  321 (431)
T ss_pred             HHHHHHhcCCCCCHH--HHHHHh--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEEC
Confidence                00112222222  455444  56677889999999999999999999999876554

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.81  E-value=1.1e-18  Score=176.33  Aligned_cols=217  Identities=16%  Similarity=0.167  Sum_probs=158.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v  250 (438)
                      ++.+.++++.|.+..        +++++|+.|+.+++.++.     ++|   ++|+++.+.|..    +...+..+|+++
T Consensus        69 ~le~~lA~l~g~~~~--------i~~~sG~~Al~~~l~~ll-----~~G---d~Viv~~~~y~~t~~~~~~~~~~~G~~v  132 (403)
T PRK07503         69 LLEQRMASLEGGEAA--------VALASGMGAITATLWTLL-----RPG---DEVIVDQTLYGCTFAFLHHGLGEFGVTV  132 (403)
T ss_pred             HHHHHHHHHhCCCcE--------EEEcCHHHHHHHHHHHHc-----CCC---CEEEEccCccchHHHHHHHHHhhCCEEE
Confidence            344578999998642        678899999999888754     377   899999988865    334566789999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.++++     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+..         ..++
T Consensus       133 ~~vd~~-----d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~---------~~~l  198 (403)
T PRK07503        133 RHVDLT-----DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL---------QRPL  198 (403)
T ss_pred             EEeCCC-----CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc---------CCch
Confidence            999874     79999999999999999999999999999999999999999999999999864322         1122


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                         ..++|+++.|.+|++.++.+  .|+++ .++++........  +.       ...|.+....  .+|..+  .+.+.
T Consensus       199 ---~~g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~~~l~~~~--~~-------~~~g~~~s~~--~a~l~l--~~L~t  261 (403)
T PRK07503        199 ---ELGADLVVHSATKYLGGHGDITAGLVV-GGKALADRIRLEG--LK-------DMTGAVMSPF--DAFLLM--RGLKT  261 (403)
T ss_pred             ---hhCCCEEEccccccccCCCceeEEEEE-cCHHHHHHHHhhh--HH-------hCcCCCCCHH--HHHHHH--cCcch
Confidence               24789999999999654433  67665 5554433211000  00       1112333322  445555  35567


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +..+.++..++++.+.+.|+++|.++.+.|
T Consensus       262 l~~r~~~~~~na~~~a~~L~~~p~v~~V~~  291 (403)
T PRK07503        262 LALRMDRHCASAQAVAEWLARHPAVELVHY  291 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            778888888999999999999998775543

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.81  E-value=2.6e-18  Score=172.64  Aligned_cols=216  Identities=22%  Similarity=0.221  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIK  249 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~  249 (438)
                      .++.+.+++++|.+.      +  +++++|++|+..++.++.     ++|   ++|+++...|.+    +.+.+..+|++
T Consensus        57 ~~le~~la~l~g~~~------~--~~~~sG~~Ai~~al~al~-----~~G---d~Vl~~~~~~~~t~~~~~~~~~~~g~~  120 (380)
T TIGR01325        57 AAFEERIAALEGAER------A--VATATGMSAIQAALMTLL-----QAG---DHVVASRSLFGSTVGFISEILPRFGIE  120 (380)
T ss_pred             HHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEecCCcchHHHHHHHHHHHhCCE
Confidence            344456888998852      2  789999999999998875     367   899999888865    34566778999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      ++.++.+     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|++++||++++.+..   +     . +
T Consensus       121 v~~v~~~-----d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~---~-----~-p  186 (380)
T TIGR01325       121 VSFVDPT-----DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVL---Q-----Q-P  186 (380)
T ss_pred             EEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc---C-----C-c
Confidence            9999875     79999999999999999999999999999999999999999999999999874332   1     1 2


Q ss_pred             CccCCCCccEEEeCCCCCCCCCC-Cc-EEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPK-GT-SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~-g~-g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      +   ..|+|+++.|++|++.++. .. |+++.+ ++..+........ .          |.....  ..+|.++  .|.+
T Consensus       187 l---~~g~Divv~S~sK~l~g~g~~~gG~vv~~-~~~~~~l~~~~~~-~----------g~~~~p--~~a~~~l--~~l~  247 (380)
T TIGR01325       187 L---KLGADVVVYSATKHIDGQGRVMGGVIAGS-EELMAEVAVYLRH-T----------GPAMSP--FNAWVLL--KGLE  247 (380)
T ss_pred             h---hhCCCEEEeeccceecCCCCeEEEEEEeC-HHHHHHHHHHHHh-h----------CCCCCH--HHHHHHH--hccC
Confidence            2   3478999999999965542 23 555544 4433221111000 1          111111  1345555  4557


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .+..+.++..++++++.+.|+++|+++-+.|
T Consensus       248 tl~~r~~~~~~~a~~la~~L~~~p~v~~V~y  278 (380)
T TIGR01325       248 TLSLRMQKQFDSALAIAEWLQAQPQVQAVYY  278 (380)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence            7788899999999999999999998765443

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PLN02721 threonine aldolase

Probab=99.81  E-value=1.5e-18  Score=172.53  Aligned_cols=225  Identities=24%  Similarity=0.219  Sum_probs=149.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---HHhhcCcEEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---AAQYFNIKLW  251 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---a~~~~Gi~v~  251 (438)
                      ++++.+++++|.+.        ++++++||+++..++.+...    .+|   ++|++++++|+++.+   .+...|++++
T Consensus        44 ~l~~~la~~~~~~~--------~~~~~~Gs~a~~~~l~~~~~----~~g---d~Vl~~~~~~~~~~~~~~~~~~~g~~~~  108 (353)
T PLN02721         44 RLEEEMAKIFGKEA--------ALFVPSGTMGNLISVLVHCD----VRG---SEVILGDNSHIHLYENGGISTLGGVHPR  108 (353)
T ss_pred             HHHHHHHHHhCCce--------eEEecCccHHHHHHHHHHcc----CCC---CeEEEcCccceehhcccchhhhcCceeE
Confidence            44556888888753        27888889998887777542    256   899999999987776   5778899999


Q ss_pred             EeeCCCCCccCHHHHHHhhc-------cCcEEEEEec-CCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          252 RVPVDKEFRADVKAIKKYIN-------RNTVLIVGSA-PGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~-------~~t~~vv~~~-~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      .+|.++++.+|+++++++|+       +++++|++++ ++||+|.+.|   +++|.++|+++|+++|+|+++.-....  
T Consensus       109 ~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~--  186 (353)
T PLN02721        109 TVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASV--  186 (353)
T ss_pred             ecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchh--
Confidence            99988888999999999998       5889999877 4678898765   789999999999999999987422110  


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                       ..+.   +.+....++|++++++||++.+|.|  ++++.++++..........+.++.         +... . .+.++
T Consensus       187 -~~~~---~~~~~~~~~d~~~~s~sK~l~~~~G--~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~-~~~~~  249 (353)
T PLN02721        187 -ALGV---PVHRLVKAADSVSVCLSKGLGAPVG--SVIVGSKSFIRKAKRLRKTLGGGM---------RQVG-V-LAAAA  249 (353)
T ss_pred             -hhCC---CHHHHhhhCCEEEEecccccCCcee--eEEecCHHHHHhHHHHHHhcCCCe---------ehhH-H-HHHHH
Confidence             0111   1222234789999999999766544  345555655433211111111110         0011 1 11122


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +..+  +...+..++..++++++.+.|++++++++
T Consensus       250 ~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  282 (353)
T PLN02721        250 LVAL--QENVPKLEDDHKKAKLLAEGLNQIKGLRV  282 (353)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            2212  22233345556778899999998887743

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.81  E-value=2e-18  Score=174.08  Aligned_cols=217  Identities=15%  Similarity=0.126  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCcE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNIK  249 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi~  249 (438)
                      +++.+.++++.|.+.      .  +++++|++|+..++.++.     ++|   |+|+++.+.|.+..    ..+..+|++
T Consensus        67 ~~le~~lA~l~g~~~------~--i~~ssG~~Ai~~~l~all-----~~G---D~Vi~~~~~y~~~~~~~~~~~~~~Gi~  130 (398)
T PRK08249         67 QAFEEKVRILEGAEA------A--TAFSTGMAAISNTLYTFL-----KPG---DRVVSIKDTYGGTNKIFTEFLPRMGVD  130 (398)
T ss_pred             HHHHHHHHHHhCCCe------E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEcCCchHHHHHHHHHHHhhCCeE
Confidence            345557899999753      2  778888999999988765     367   89999999998754    345677999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      ++.++.     .|+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+..         ..+
T Consensus       131 v~~vd~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~---------~~~  196 (398)
T PRK08249        131 VTLCET-----GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPIN---------QNP  196 (398)
T ss_pred             EEEcCC-----CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCcccc---------CCc
Confidence            887764     589999999999999999999999999999999999999999999999999874332         011


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCC-cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                         ...++|+++.|.+|++.++.. .|.+++.++++.+.......           ..|.....  ..+|.++  .+.+.
T Consensus       197 ---l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~-----------~~g~~~s~--~~a~l~l--~~l~t  258 (398)
T PRK08249        197 ---LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE-----------INGATMDP--MSAYLIL--RGMKT  258 (398)
T ss_pred             ---hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHH-----------hcCCCCCH--HHHHHHH--hCcch
Confidence               234789999999999544332 33345555554332211110           11222222  2556555  35577


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +..+.++..++++.+.+.|++.|.++-+.|
T Consensus       259 L~~R~~~~~~na~~la~~L~~~p~v~~V~y  288 (398)
T PRK08249        259 LKLRVRQQQESAMALAKYLQTHPKVEAVYY  288 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence            788889999999999999999988775544

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.81  E-value=4.9e-18  Score=172.08  Aligned_cols=235  Identities=20%  Similarity=0.162  Sum_probs=162.5

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH--
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a--  242 (438)
                      ..+...++++.+++.+++++|.+...       ++++|||+|+..++.++.     ++|   ++|+++.+.|++....  
T Consensus        59 ~~~~~~~l~~~~~~~~~~~~g~~~~~-------v~~~sgt~a~~~~l~~l~-----~~G---d~Vl~~~~~~~~~~~~~~  123 (402)
T cd00378          59 GCEYVDEIEDLAIERAKKLFGAEYAN-------VQPHSGSQANLAVYFALL-----EPG---DTIMGLDLSHGGHLTHGS  123 (402)
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCcee-------eecCCcHHHHHHHHHHhc-----CCC---CEEEEecCccCccccccc
Confidence            45566778877888999999998653       454568999999998875     377   8999999998765332  


Q ss_pred             ---HhhcCcEEEEeeCCC---CCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccch
Q 013675          243 ---AQYFNIKLWRVPVDK---EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       243 ---~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                         ++..|.+++.++++.   ++.+|++++++++. +++++++++++++  |...|+++|+++|+++|+++++|+++...
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~--~~~~~~~~I~~l~~~~~~~li~D~a~~~g  201 (402)
T cd00378         124 FTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAY--PRPIDFKRFREIADEVGAYLLVDMAHVAG  201 (402)
T ss_pred             cccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCccc--CCCcCHHHHHHHHHhcCCEEEEEccchhh
Confidence               566788777777643   68999999999995 5788998888765  56789999999999999999999996332


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                      ...    .|. . +....  ++|+++.++||++.||.| |+++++++++.+........         ...++.....++
T Consensus       202 ~~~----~g~-~-~~~~~--~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~  263 (402)
T cd00378         202 LVA----GGV-F-PNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAVFP---------GLQGGPHLHVIA  263 (402)
T ss_pred             hhh----ccc-C-CCccc--CCcEEEeccccCCCCCCc-eEEEeccHHHHHHHHHHhCc---------cccCCchHHHHH
Confidence            221    111 1 11222  679999999999756665 66667653444322111110         011111122333


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++..++......++.+..++..++++++.+.|++. |+++
T Consensus       264 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  302 (402)
T cd00378         264 AKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKV  302 (402)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeE
Confidence            44445544433467788888999999999999886 6553

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.81  E-value=1.5e-18  Score=174.78  Aligned_cols=221  Identities=19%  Similarity=0.151  Sum_probs=157.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH---
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA---  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a---  242 (438)
                      .|...++|+    .+++++|.+. .       +++++|+.|+..++.++.     ++|   ++|+++.+.|......   
T Consensus        60 ~pt~~~Le~----~lA~l~G~~~-a-------l~~~sG~~Ai~~~l~al~-----~~G---d~Vv~~~~~y~~~~~~~~~  119 (386)
T PRK06767         60 NPTVKLFEE----RMAVLEGGEE-A-------LAFGSGMAAISATLIGFL-----KAG---DHIICSNGLYGCTYGFLEV  119 (386)
T ss_pred             CcchHHHHH----HHHHHhCCCc-E-------EEECCHHHHHHHHHHHHh-----CCC---CEEEEcCCcHHHHHHHHHH
Confidence            344555554    6899999753 2       678888999988887765     377   8999999988775444   


Q ss_pred             -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                       +..+|+++..++.     .|+++++++++++|++|++++|+||+|.+.|+++|.++|+++|+++++|++|+....   +
T Consensus       120 ~~~~~gi~~~~~~~-----~d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~---~  191 (386)
T PRK06767        120 LEEKFMITHSFCDM-----ETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYL---Q  191 (386)
T ss_pred             HHhhcCeEEEEeCC-----CCHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccccc---C
Confidence             3445777776654     389999999999999999999999999999999999999999999999999864322   1


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                           . ++   ..|+|+++.+++|++.++..  .|+++.+++.+.+........ .|+          ....  ..+|+
T Consensus       192 -----~-pl---~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~-~g~----------~~~~--~~a~l  249 (386)
T PRK06767        192 -----R-PL---ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKD-IGG----------IMAP--FDAWL  249 (386)
T ss_pred             -----C-ch---hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHH-hCC----------CCCH--HHHHH
Confidence                 1 22   35789999999999655443  577766654332211111111 111          1111  23555


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .++  +.+.+..+.++..++++++++.|+++|+++.+.|
T Consensus       250 ~~~--~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~  286 (386)
T PRK06767        250 LLR--GLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWY  286 (386)
T ss_pred             HHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence            553  4455667888999999999999999999986543

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=3e-18  Score=171.79  Aligned_cols=217  Identities=18%  Similarity=0.164  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi  248 (438)
                      ..++.+.++++.|.+..        +++++|+.++..++. +.     ++|   ++|+++.+.|.+..    +.+..+|+
T Consensus        52 ~~~Le~~lA~l~g~~~~--------~~~~sG~aai~~~~~-~l-----~~G---d~Viv~~~~y~~~~~~~~~~~~~~G~  114 (377)
T PRK07671         52 RAALEELIAVLEGGHAG--------FAFGSGMAAITAVMM-LF-----SSG---DHVILTDDVYGGTYRVMTKVLNRFGI  114 (377)
T ss_pred             HHHHHHHHHHHhCCCce--------EEeCCHHHHHHHHHH-Hh-----CCC---CEEEECCCccchHHHHHHHHHhcCCe
Confidence            34455579999997642        677778877765543 32     367   89999999888543    34456799


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +++.++.+     |+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+....   +     . 
T Consensus       115 ~v~~v~~~-----d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~---~-----~-  180 (377)
T PRK07671        115 EHTFVDTS-----NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYW---Q-----S-  180 (377)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcccc---C-----C-
Confidence            99988753     89999999999999999999999999999999999999999999999999864322   0     1 


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                      ++   ..|+|+++.|.+||+.+|.+  .|+++++++++........ ...|          ...+.  ..+|..++  |.
T Consensus       181 p~---~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~-~~~g----------~~~~~--~~a~l~~~--~l  242 (377)
T PRK07671        181 PI---SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQ-NSTG----------GILGP--QDSWLLLR--GL  242 (377)
T ss_pred             hh---hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHH-Hhhc----------CCCCH--HHHHHHHc--Cc
Confidence            22   34789999999999777754  5666676655443221111 1111          11111  25666653  44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +.+..+.++..++++.+.+.|++.|++.-+.|
T Consensus       243 ~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~  274 (377)
T PRK07671        243 KTLGIRMEEHETNSRAIAEFLNNHPAVNKVYY  274 (377)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence            56677888999999999999999998765543

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=1.2e-18  Score=174.15  Aligned_cols=222  Identities=12%  Similarity=0.028  Sum_probs=167.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      ...|....+|+    .++++-|...        .+++++|+.|+.+++.++.     ++|   |+|+++...|.+....+
T Consensus        59 ~~nPt~~~le~----~la~LEg~~~--------a~~~~SGmaAi~~~~~~ll-----~~G---D~Vv~~~~~Yg~t~~l~  118 (395)
T PRK08114         59 RGTLTHFSLQE----AMCELEGGAG--------CALYPCGAAAVANAILAFV-----EQG---DHVLMTGTAYEPTQDFC  118 (395)
T ss_pred             CCChhHHHHHH----HHHHHhCCCe--------EEEEhHHHHHHHHHHHHHc-----CCC---CEEEEeCCCcHHHHHHH
Confidence            34566666666    5777877653        2788889999999998875     377   99999999987766544


Q ss_pred             ----hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC--CeEEEeccccchhh
Q 013675          244 ----QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLGGFVL  317 (438)
Q Consensus       244 ----~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~--i~lhVD~a~gg~~~  317 (438)
                          +.+|++++.++.     .|.++++++|+++|++|++.+|+||+|.+.||++|+++||++|  ++++||++++... 
T Consensus       119 ~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~-  192 (395)
T PRK08114        119 SKILSKLGVTTTWFDP-----LIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV-  192 (395)
T ss_pred             HHHHHhcCcEEEEECC-----CCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc-
Confidence                567999999875     3789999999999999999999999999999999999999984  9999999986432 


Q ss_pred             hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675          318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                                 -++....|+|+++.|.|||++|+.  +.|+++.+ ++..........           ..|.-..  .-
T Consensus       193 -----------~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~~~-----------~~G~~~~--p~  247 (395)
T PRK08114        193 -----------LFKALDFGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLRENSY-----------LMGQMVD--AD  247 (395)
T ss_pred             -----------ccCHHHcCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHHHHHHHH-----------hccCCCC--HH
Confidence                       245566799999999999988885  67765544 332211110000           1122112  22


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .+|..+  .|.+-+.-+.++..++|..+++.|+++|.++-++|
T Consensus       248 ~a~l~~--rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~y  288 (395)
T PRK08114        248 TAYMTS--RGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNH  288 (395)
T ss_pred             HHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEEC
Confidence            566655  56678889999999999999999999998875544

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.80  E-value=3e-18  Score=171.96  Aligned_cols=216  Identities=15%  Similarity=0.151  Sum_probs=160.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~Gi~v  250 (438)
                      ++.+.++++.|.+  +    +  ++|+||++|+.+++.++.     ++|   |+|+++.+.|.+....+    ...|+++
T Consensus        55 ~le~~lA~l~g~~--~----v--~~~~gg~~Ai~~~l~all-----~~G---D~Vl~~~p~y~~~~~~~~~~~~~~~~~v  118 (382)
T TIGR02080        55 LLQQALAELEGGA--G----A--VVTNTGMSAIHLVTTALL-----GPD---DLLVAPHDCYGGTYRLLNALAKKGCFRV  118 (382)
T ss_pred             HHHHHHHHHhCCC--c----E--EEEcCHHHHHHHHHHHHc-----CCC---CEEEEcCCCcHHHHHHHHHHHhhcCeEE
Confidence            4445788888843  2    4  899999999999998875     377   89999999998654433    3335677


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      ..++.     .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+...        . ++
T Consensus       119 ~~~d~-----~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~--------~-pl  184 (382)
T TIGR02080       119 LFVDQ-----GDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQ--------N-PL  184 (382)
T ss_pred             EEECC-----CCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccC--------C-ch
Confidence            66642     3899999999999999999999999999999999999999999999999998644321        1 22


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                         ..|+|+++.+++||+.++.+  .|++..+++++.+...... ...|          ....  ...+|..++  |.+-
T Consensus       185 ---~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~-~~~g----------~~~s--p~~a~l~lr--~l~t  246 (382)
T TIGR02080       185 ---ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWA-NNLG----------VTGG--AFDSYLTLR--GLRT  246 (382)
T ss_pred             ---hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHH-HccC----------CCCC--HHHHHHHHc--ccch
Confidence               24789999999999877776  7777777665543221111 1111          1111  225666654  5577


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +..+.++..+++..+.+.|++.|.++-+.|
T Consensus       247 l~~R~~~~~~na~~~a~~L~~~p~v~~V~y  276 (382)
T TIGR02080       247 LVARMRLQQRNAQAIVEYLQTQPLVKKIYY  276 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence            788889999999999999999998875554

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.80  E-value=1.2e-18  Score=153.98  Aligned_cols=164  Identities=24%  Similarity=0.272  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhcCcEEEE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYFNIKLWR  252 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~Gi~v~~  252 (438)
                      .+++++++++++.+.+.    +  .+++|||+|+.+++++++.     +|   ++|+++.+.|++.. ..+...|++++.
T Consensus         3 ~~~~~~l~~~~~~~~~~----~--~~~~~~t~a~~~~~~~~~~-----~~---~~v~~~~~~~~~~~~~~~~~~g~~~~~   68 (170)
T cd01494           3 EELEEKLARLLQPGNDK----A--VFVPSGTGANEAALLALLG-----PG---DEVIVDANGHGSRYWVAAELAGAKPVP   68 (170)
T ss_pred             HHHHHHHHHHcCCCCCc----E--EEeCCcHHHHHHHHHHhCC-----CC---CEEEEeecccceehhhHHHhcCCEEEE
Confidence            46778899999744443    4  8899999999999999863     45   78999999999988 888999999999


Q ss_pred             eeCCCCCccCH--HHHHHh-hccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          253 VPVDKEFRADV--KAIKKY-INRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       253 v~~~~~~~~d~--~~Le~~-I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      ++.+.++..+.  +++++. .++++.+++++++++++|...|+++|+++|+++|+++|+|++++++..+.        +.
T Consensus        69 v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~--------~~  140 (170)
T cd01494          69 VPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPA--------PG  140 (170)
T ss_pred             eccCCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccc--------cc
Confidence            99876443333  355544 35689999999999999999999999999999999999999998776531        11


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCCcEEEEEe
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYR  360 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r  360 (438)
                      .+....++|+++.++||++.+ +|+|++++|
T Consensus       141 ~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         141 VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence            234456789999999999545 899998875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.80  E-value=2.8e-18  Score=173.29  Aligned_cols=215  Identities=15%  Similarity=0.105  Sum_probs=159.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v  250 (438)
                      ++.+.++++.|.+.      .  +++++|+.|+..++.++.     .+|   ++|+++...|..    +.+.++.+|+++
T Consensus        74 ~le~~lA~l~g~~~------a--l~~~sG~~Ai~~~l~all-----~~G---d~Vl~~~~~~~~t~~~~~~~~~~~G~~v  137 (403)
T PRK07810         74 MFEERLRLIEGAEA------C--FATASGMSAVFTALGALL-----GAG---DRLVAARSLFGSCFVVCNEILPRWGVET  137 (403)
T ss_pred             HHHHHHHHHhCCCc------E--EEECChHHHHHHHHHHHh-----CCC---CEEEEccCCcchHHHHHHHHHHHcCcEE
Confidence            34446899999763      2  899999999999888765     367   899999876633    345677789999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.++.+     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|++++||++++.+..            .
T Consensus       138 ~~vd~~-----d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~------------~  200 (403)
T PRK07810        138 VFVDGE-----DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL------------Q  200 (403)
T ss_pred             EEECCC-----CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc------------C
Confidence            999753     89999999999999999999999999999999999999999999999999864332            1


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC---cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g---~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      .....|+|+++.|.+|++ ++.|   .|+++.+++.+..........           .|.....  ..+|.++  .+.+
T Consensus       201 ~~~~~gaDivv~S~tK~l-~g~g~~~gG~v~~~~~~~~~~l~~~~~~-----------~g~~~s~--~~a~l~l--~~L~  264 (403)
T PRK07810        201 RGLPLGADVVVYSGTKHI-DGQGRVLGGAILGDREYIDGPVQKLMRH-----------TGPALSA--FNAWVLL--KGLE  264 (403)
T ss_pred             ChhhcCCcEEEccCCcee-cCCcCceeEEEEeChHHHHHHHHHHHHH-----------hCCCCCH--HHHHHHH--hccC
Confidence            112347899999999995 4444   476665543222111000000           1112222  2555555  4567


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      -+..+.++..+++.++.+.|++.|.++-+.|
T Consensus       265 tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~y  295 (403)
T PRK07810        265 TLALRVRHSNASALRIAEFLEGHPAVRWVRY  295 (403)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence            8899999999999999999999998875554

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.80  E-value=3.6e-18  Score=170.92  Aligned_cols=220  Identities=17%  Similarity=0.087  Sum_probs=161.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH---
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA---  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a---  242 (438)
                      .|....+|+    .++++.|.+.      +  ++++||++|+..++.++.     ++|   |+|+++++.|.+....   
T Consensus        49 nPt~~~lE~----~lA~l~g~~~------~--~~~~sG~~Ai~~al~all-----~~G---D~Vl~~~~~y~~t~~~~~~  108 (377)
T TIGR01324        49 TLTHFALQD----AMCELEGGAG------C--YLYPSGLAAVTNSILAFV-----KAG---DHVLMVDSAYEPTRYFCDI  108 (377)
T ss_pred             CccHHHHHH----HHHHHhCCCc------E--EEECcHHHHHHHHHHHhc-----CCC---CEEEEcCCCcHHHHHHHHH
Confidence            455556665    5888888752      3  789999999999998875     377   9999999998776543   


Q ss_pred             -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                       +..+|++++.++.+     +.++++++++++|++|++++|+||+|.+.|+++|+++|+++|++++||++|+.+..    
T Consensus       109 ~~~~~gi~v~~~d~~-----~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~----  179 (377)
T TIGR01324       109 VLKRMGVDITYYDPL-----IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL----  179 (377)
T ss_pred             HHHhcCcEEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc----
Confidence             45678988887643     23889999999999999999999999999999999999999999999999875432    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                              ++....|+|++..|.|||+.++.+  .|++..+ ++.........           ...|.-...  ..+|.
T Consensus       180 --------~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~-~~~~~~l~~~~-----------~~~G~~l~p--~~a~~  237 (377)
T TIGR01324       180 --------FKPLEHGVDISIQAGTKYLVGHSDIMIGTVVAN-ARTWDQLREHS-----------YLMGQMVDA--DDAYT  237 (377)
T ss_pred             --------cCccccCceEEEecCceeccCCCCceEEEEEeC-HHHHHHHHHHH-----------HHhCCCCCH--HHHHH
Confidence                    122346899999999999777754  4665554 33322111100           011211121  25676


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .++  |.+-+..+.++..++|..+++.|++.|.++-+.|
T Consensus       238 ~~r--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~y  274 (377)
T TIGR01324       238 TLR--GLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLH  274 (377)
T ss_pred             HHh--hhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEEC
Confidence            664  4466777789999999999999999988765443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.80  E-value=1.4e-17  Score=168.85  Aligned_cols=243  Identities=16%  Similarity=0.116  Sum_probs=170.4

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--C-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      .|...++..++.+.+.+++++.+|.+  + ++    +  ++|+|+++++.+++.++.+     +|   |+|+++.++|+.
T Consensus        73 ~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~----I--~it~Ga~~al~~~~~~l~~-----~G---d~Vlv~~P~y~~  138 (405)
T PRK06207         73 AYTEYRGDADIRELLAARLAAFTGAPVDAADE----L--IITPGTQGALFLAVAATVA-----RG---DKVAIVQPDYFA  138 (405)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----E--EEeCCcHHHHHHHHHHhcC-----CC---CEEEEeCCCchh
Confidence            35455677788999999999999964  3 44    6  8999999999999988763     77   999999999999


Q ss_pred             HHHHHhhcCcEEEEeeCC-----CCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEec
Q 013675          239 YDKAAQYFNIKLWRVPVD-----KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL  310 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~-----~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~  310 (438)
                      +...++.+|.+++.+|++     .++.+|+++|+++++++++++++++|+||||.+.+   +++|+++|+++|+++++|+
T Consensus       139 ~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De  218 (405)
T PRK06207        139 NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQ  218 (405)
T ss_pred             HHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence            999999999999999986     25789999999999989999999999999999987   6788899999999999999


Q ss_pred             cccchhhhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccC
Q 013675          311 CLGGFVLPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG  387 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g  387 (438)
                      +|+.+...     +.+.+++ ... ...-.++..++.|... .+..+|+++.. +++.+........+...         
T Consensus       219 ~Y~~~~~~-----~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~-~~l~~~~~~~~~~~~~~---------  283 (405)
T PRK06207        219 LYSRLLYD-----GTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGS-PAIIDRMEKLQAIVSLR---------  283 (405)
T ss_pred             cccccccC-----CCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcC-HHHHHHHHHHHhHhccC---------
Confidence            99865431     1001111 111 1122477778899943 33459997654 44433221111111000         


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                       .+.....++..++. -+...+++..++..+.++.+.+.|++++++++
T Consensus       284 -~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  329 (405)
T PRK06207        284 -AAGYSQAVLRTWFS-EPDGWMKDRIARHQAIRDDLLRVLRGVEGVFV  329 (405)
T ss_pred             -CCHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence             00111112222221 13334677777788888889999988766553

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.80  E-value=4.6e-18  Score=173.15  Aligned_cols=233  Identities=18%  Similarity=0.150  Sum_probs=163.4

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---H-
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---A-  242 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---a-  242 (438)
                      +...++|+.+++.+++++|.+...       +++++||+|+..++.++.     ++|   ++|+++.++|.++..   . 
T Consensus        67 ~~~~~~e~~~~~~la~~~g~~~~~-------i~~~sgt~al~~~l~~l~-----~~g---d~Vl~~~~~~~~~~~~~~~~  131 (416)
T PRK00011         67 EYVDVVEQLAIDRAKELFGAEYAN-------VQPHSGSQANAAVYFALL-----KPG---DTILGMDLAHGGHLTHGSPV  131 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCcee-------eecCCchHHHHHHHHHhc-----CCC---CEEEEeccccCCcccccccc
Confidence            345667777888999999998654       444567889998888774     377   899999999876432   1 


Q ss_pred             -HhhcCcEEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          243 -AQYFNIKLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       243 -~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                       ....|++++.+++++ ++.+|++++++++++ +|++|+++.++  +|...|+++|+++|+++|+++++|++++.+... 
T Consensus       132 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~--~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~-  208 (416)
T PRK00011        132 NFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA--YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVA-  208 (416)
T ss_pred             ccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCc--CCCccCHHHHHHHHHHcCCEEEEECcchhcccc-
Confidence             223467888888874 689999999999975 78888876544  567789999999999999999999997533221 


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                         .|. . +..+.  ++|+++.++||++.+|.| |+++++++++.........  .+       ..++.....++++..
T Consensus       209 ---~g~-~-~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~~~--~~-------~~~~~~~~~~aa~~~  271 (416)
T PRK00011        209 ---AGV-H-PSPVP--HADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSAVF--PG-------IQGGPLMHVIAAKAV  271 (416)
T ss_pred             ---cCc-c-CCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHHhC--cc-------ccCCccHHHHHHHHH
Confidence               111 1 12222  689999999999766665 6667765554432211111  11       111222234556566


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++.....+++++..++..++++++++.|++. |+++
T Consensus       272 a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  306 (416)
T PRK00011        272 AFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRV  306 (416)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCee
Confidence            6655556678899999999999999999886 5653

>PRK07179 hypothetical protein; Provisional

Probab=99.80  E-value=6.7e-18  Score=171.45  Aligned_cols=223  Identities=16%  Similarity=0.148  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++.+.+++++|.+.      +  ++|+||++|+..+++++..     +|   +.|+++...|++....++..|++++.
T Consensus       101 ~~~le~~la~~~g~~~------~--~~~~sG~~An~~~l~~l~~-----~g---~~v~~~~~~h~s~~~~~~~~g~~~~~  164 (407)
T PRK07179        101 KPQFEKKLAAFTGFES------C--LLCQSGWAANVGLLQTIAD-----PN---TPVYIDFFAHMSLWEGVRAAGAQAHP  164 (407)
T ss_pred             HHHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHHHhCC-----CC---CEEEEECCcCHHHHHHHHHCCCeEEE
Confidence            3344467899998853      2  7899999999999998763     56   78999999999999988888988766


Q ss_pred             eeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC-CCCC
Q 013675          253 VPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP-IPPF  330 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~-~p~~  330 (438)
                      ++.     .|++++++++++ ++++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+...   ..|.. ...+
T Consensus       165 ~~~-----~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g---~~g~g~~~~~  236 (407)
T PRK07179        165 FRH-----NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHG---PQGAGLVAEL  236 (407)
T ss_pred             ecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcC---CCCCchHHhc
Confidence            543     489999999986 5889999999999999999999999999999999999999743321   01100 0012


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYL  410 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~  410 (438)
                      +.. .++|+++.+.||++ ++. +|+++.++ ++........  ++ .     ...++.+...++++.++++.+  +...
T Consensus       237 ~~~-~~vdi~~~S~sK~~-g~~-~G~l~~~~-~~~~~~~~~~--~~-~-----~~~~t~~~~~~aa~~aal~~~--~~~~  302 (407)
T PRK07179        237 GLT-SRVHFITASLAKAF-AGR-AGIITCPR-ELAEYVPFVS--YP-A-----IFSSTLLPHEIAGLEATLEVI--ESAD  302 (407)
T ss_pred             CCC-CCCCEEEeechHhh-hcc-CeEEEeCH-HHHHHHHHhC--cC-e-----eeCCCCCHHHHHHHHHHHHHH--hcCH
Confidence            211 35799999999995 554 78877654 3332211110  00 0     011222233445555666654  2235


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          411 ENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       411 ~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +..++..++++++.+.|+++ |++
T Consensus       303 ~~~~~l~~~~~~l~~~L~~~-g~~  325 (407)
T PRK07179        303 DRRARLHANARFLREGLSEL-GYN  325 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCC
Confidence            67788999999999999887 554

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.80  E-value=6e-18  Score=170.22  Aligned_cols=225  Identities=19%  Similarity=0.178  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++++++++|.++++    +  ++|+|+|+++.+++.++.     .+|   ++|+++.+.|..+..+++..|.+++.+
T Consensus        69 ~~lr~~ia~~l~~~~~~----v--~~~~g~t~al~~~~~~~~-----~~g---d~vl~~~p~y~~~~~~~~~~g~~~~~v  134 (380)
T PRK06225         69 PELRELILKDLGLDDDE----A--LITAGATESLYLVMRAFL-----SPG---DNAVTPDPGYLIIDNFASRFGAEVIEV  134 (380)
T ss_pred             HHHHHHHHHhcCCCCCc----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEcCCCCcchHHHHHHhCceEEee
Confidence            35666788889998765    6  899999999999998875     266   889999999999999999999999999


Q ss_pred             eCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          254 PVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       254 ~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      |++.   ++.+|+++++++++++++++++++|+||||.+.+   +++|+++|+++|+++++|++|+.+...      . .
T Consensus       135 ~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~------~-~  207 (380)
T PRK06225        135 PIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFARE------H-T  207 (380)
T ss_pred             ccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhcc------C-C
Confidence            9742   4689999999999999999999999999999754   889999999999999999998765321      1 1


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                      +.... .....++..+++|++ +++|  +|+++.++ ++.+........    .      .+. +....+++.+++.. .
T Consensus       208 ~~~~~-~~~~~i~~~s~SK~~-g~~G~RiG~i~~~~-~l~~~~~~~~~~----~------~~~-~~~~~~~a~~~l~~-~  272 (380)
T PRK06225        208 LAAEY-APEHTVTSYSFSKIF-GMAGLRIGAVVATP-DLIEVVKSIVIN----D------LGT-NVIAQEAAIAGLKV-K  272 (380)
T ss_pred             chhhc-CCCCEEEEeechhhc-CCccceeEEEecCH-HHHHHHHHHHhc----c------cCC-CHHHHHHHHHHHhc-c
Confidence            00111 122356666888994 6555  79887754 343321111100    0      010 00011122223322 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+.+++..+...++.+.+.+.|++++++.
T Consensus       273 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  301 (380)
T PRK06225        273 DEWIDRIRRTTFKNQKLIKEAVDEIEGVF  301 (380)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCcCCc
Confidence            23344555555667777888888876643

>PRK05968 hypothetical protein; Provisional

Probab=99.80  E-value=3.3e-18  Score=172.27  Aligned_cols=215  Identities=19%  Similarity=0.162  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIK  249 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~  249 (438)
                      .++.+.+++++|.+..        +++++|+.|+.+++.+..     ++|   ++|+++...|.+    +...+...|++
T Consensus        66 ~~le~~lA~l~g~~~a--------v~~~sG~~Ai~~al~al~-----~~G---d~Vl~~~~~y~~t~~~~~~~~~~~G~~  129 (389)
T PRK05968         66 RAFEEMLAKLEGAEDA--------RGFASGMAAISSTVLSFV-----EPG---DRIVAVRHVYPDAFRLFETILKRMGVE  129 (389)
T ss_pred             HHHHHHHHHHhCCCcE--------EEECCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchHHHHHHHHHHHHcCce
Confidence            3444578999998642        566788899998887754     377   899999998876    34567778999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      ++.++.+     |++++++++ ++|++|++++|+++++.+.|+++|+++|+++|+++++|++++.+...        . +
T Consensus       130 v~~vd~~-----d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~--------~-p  194 (389)
T PRK05968        130 VDYVDGR-----DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQ--------R-P  194 (389)
T ss_pred             EEEeCCC-----CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhcc--------C-c
Confidence            9998754     899999998 67899999999999999999999999999999999999998654321        1 2


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      .   ..|+|+++.|++|++.+|.+  .|+++ .++++..........|.|+          ....  ..+|..+  .+.+
T Consensus       195 ~---~~g~Divv~S~tK~l~g~~~~~gG~i~-~~~~~~~~l~~~~~~~~g~----------~~~~--~~A~~~l--~~L~  256 (389)
T PRK05968        195 I---TLGVDLVIHSASKYLGGHSDTVAGVVA-GSKEHIARINAEAYPYLGA----------KLSP--FEAWLLL--RGLR  256 (389)
T ss_pred             h---hcCCcEEEeeccccccCCCCeEEEEEE-ECHHHHHHHHHHHHHhCCC----------CCCh--HHHHHHH--cccC
Confidence            2   34789999999999777654  56655 4444332211111112221          1111  1444444  4456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLPPL  437 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l  437 (438)
                      .+..+.++..++++++.+.|+++|+++.+.
T Consensus       257 tl~~r~~~~~~~a~~la~~L~~~p~v~~v~  286 (389)
T PRK05968        257 TLPLRMKAHEASALEIARRLKAHPVVERVC  286 (389)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence            778899999999999999999999886544

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=4.9e-18  Score=172.45  Aligned_cols=232  Identities=16%  Similarity=0.118  Sum_probs=163.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----  241 (438)
                      .|...++|    +.++++.|.+..        +++++|+.|+.+++.++.     ++|   ++|+++...|.+...    
T Consensus        68 ~p~~~~Le----~~lA~l~g~~~a--------v~~sSG~aAi~~al~all-----~~G---d~Vv~~~~~y~~t~~~~~~  127 (436)
T PRK07812         68 NPTQDVVE----QRIAALEGGVAA--------LLLASGQAAETFAILNLA-----GAG---DHIVSSPRLYGGTYNLFHY  127 (436)
T ss_pred             CchHHHHH----HHHHHHhCCCeE--------EEEccHHHHHHHHHHHHh-----CCC---CEEEEeCCcchHHHHHHHH
Confidence            34444444    468899988642        788899999999998775     367   899999988877543    


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .+..+|++++.++ +.   .|+++++++++++|++|++.+++||+|.+.|+++|+++|+++|++++||++++....    
T Consensus       128 ~l~~~Gi~v~~vd-d~---~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~----  199 (436)
T PRK07812        128 TLPKLGIEVSFVE-DP---DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL----  199 (436)
T ss_pred             HhhcCeEEEEEEC-CC---CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc----
Confidence            3445788888886 32   289999999999999999999999999999999999999999999999999764322    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEeccccc--ccchh--c--ccccCC-------C-cc-----
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIR--KHQFV--A--VTEWSG-------G-LY-----  380 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~--~~~~~--~--~~~~~g-------~-~~-----  380 (438)
                              .+....|+|+++.|+|||+ ++.|  +|.+++.+....  ...+.  .  .+.|..       . .+     
T Consensus       200 --------~~pl~~GaDivv~S~tK~l-gg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (436)
T PRK07812        200 --------IRPLEHGADIVVHSATKYL-GGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKAR  270 (436)
T ss_pred             --------CCchhcCCCEEEEeccccc-CCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHH
Confidence                    1223468999999999995 5555  455555433211  00000  0  001100       0 00     


Q ss_pred             -CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          381 -VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       381 -~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                       ......|.+....  .+|..+  .|.+.+..+.++..++|..+++.|+++|+++-+.|
T Consensus       271 ~~~~~~~G~~l~p~--~a~l~~--rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~y  325 (436)
T PRK07812        271 VQLLRDLGSAISPF--NAFLIA--QGLETLSLRIERHVANAQRVAEFLEARDEVASVNY  325 (436)
T ss_pred             HHHHHhcCCCCCHH--HHHHHh--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence             0000112233322  555554  57788999999999999999999999999876554

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.80  E-value=1.2e-17  Score=170.53  Aligned_cols=242  Identities=12%  Similarity=0.148  Sum_probs=169.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      |....+..++++.+.+++.+..|.  ++++    +  ++|+|+++|+.+++.++.     .+|   |+|+++.+.|+.+.
T Consensus        90 Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~----v--~it~G~~~al~l~~~~l~-----~~G---d~Vlv~~P~y~~y~  155 (430)
T PLN00145         90 YSTCVGLLPARRAIAEYLSRDLPYELSTDD----I--YLTAGCAQAIEIIMSVLA-----QPG---ANILLPRPGYPLYE  155 (430)
T ss_pred             CCCCccCHHHHHHHHHHHhhccCCCCChhh----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEcCCCCccHH
Confidence            444556777777777777665554  3444    6  899999999999999875     377   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      ..+...|++++.+++.+  ++.+|+++++++++++|+++++++|+||||.+.|   +++|.++|+++|+++++|++|+.+
T Consensus       156 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~  235 (430)
T PLN00145        156 ARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHL  235 (430)
T ss_pred             HHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhh
Confidence            99999999999998753  6889999999999999999999999999999988   788899999999999999999865


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEeccc-cccc-----chhcccccCCCccCCCCccCC
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNRE-IRKH-----QFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~-~~~~-----~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      ...  .. .+ .|...+....-.++..+..|. +..+..+|+++..++. +...     .......          . +.
T Consensus       236 ~~~--~~-~~-~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~----------~-~~  300 (430)
T PLN00145        236 TFG--SK-PF-VPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLN----------I-ST  300 (430)
T ss_pred             ccC--CC-Cc-cchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhc----------c-cC
Confidence            431  10 00 111111111224666678899 4455669998875432 2111     0000000          0 00


Q ss_pred             CCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          389 RPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+...  .+.++...+   ..+.+++..+...+.++.+.+.|++++++..
T Consensus       301 ~~~~~--~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~  348 (430)
T PLN00145        301 DPATF--VQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITC  348 (430)
T ss_pred             CCCHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            01111  233333333   2355778888888999999999998888753

>PLN00175 aminotransferase family protein; Provisional

Probab=99.80  E-value=1.7e-17  Score=168.54  Aligned_cols=254  Identities=16%  Similarity=0.119  Sum_probs=175.7

Q ss_pred             HHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCC
Q 013675          149 NEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR  226 (438)
Q Consensus       149 ~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~  226 (438)
                      .+.+...+..+..+|....+..++++.+.+++.+..|.+  +++   ++  ++|+|+++|+.+++.++.     .+|   
T Consensus        73 ~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~---~I--~vt~G~~~al~~~~~~l~-----~~g---  139 (413)
T PLN00175         73 KEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEK---EV--TVTSGCTEAIAATILGLI-----NPG---  139 (413)
T ss_pred             HHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CE--EEeCCHHHHHHHHHHHhC-----CCC---
Confidence            333333333333445566778888888888888887754  331   15  889999999999888765     377   


Q ss_pred             CeEEecCCCcCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc
Q 013675          227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH  302 (438)
Q Consensus       227 ~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~  302 (438)
                      |+|+++.+.|+.+...++..|++++.+|+++ ++.+|++++++++++++++|++++|+||||.+.+   +++|+++|++|
T Consensus       140 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~  219 (413)
T PLN00175        140 DEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN  219 (413)
T ss_pred             CEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999975 6899999999999999999999999999999975   77899999999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccC
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYV  381 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~  381 (438)
                      ++++++|++|..+...   .....+..++ ...+..++..++.|.+. .+..+|+++..+ ++........ .+.     
T Consensus       220 ~~~ii~De~Y~~l~~~---~~~~s~~~~~-~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~-~l~~~l~~~~-~~~-----  288 (413)
T PLN00175        220 DVLAFTDEVYDKLAFE---GDHISMASLP-GMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAH-SFL-----  288 (413)
T ss_pred             CcEEEEecccCccccC---CcccChhhCC-CCcCcEEEEecchhhccCcchheeeeEeCH-HHHHHHHHHH-hhc-----
Confidence            9999999999866431   0000010111 11233577788899954 445689877653 3332211111 000     


Q ss_pred             CCCccCCCCCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                        ....+     ...++++...+  +...+++..++..+.++.+.+.|++. ++.
T Consensus       289 --~~~~s-----~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  335 (413)
T PLN00175        289 --TFATA-----TPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV-GFK  335 (413)
T ss_pred             --cCCCC-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence              00001     11233333333  34556777888888999999999876 443

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.80  E-value=1.3e-18  Score=172.47  Aligned_cols=236  Identities=16%  Similarity=0.086  Sum_probs=172.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCC-hHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSG-GTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YD  240 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~g-gt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~  240 (438)
                      ..++.+.++.+++++.++++++.+.+.   ++  ++++| ||+|+..++..+..     +|   +++++.....++  +.
T Consensus        30 hr~~~f~~~~~~~~~~l~~l~~~~~~~---~v--~~~~gsgT~a~ea~~~nl~~-----~~---~~~l~i~~G~fg~r~~   96 (349)
T TIGR01364        30 HRSKEFEAVANEAESDLRELLNIPDNY---EV--LFLQGGATGQFAAVPLNLLA-----EG---KVADYIVTGAWSKKAA   96 (349)
T ss_pred             CCchHHHHHHHHHHHHHHHHhCCCCCc---eE--EEEcCCchHHHHHHHHhcCC-----CC---CeEEEEECCHHHHHHH
Confidence            345667789999999999999985432   14  56655 99999999998753     44   555554444333  67


Q ss_pred             HHHhhcCcEEEEeeCCCC----CccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675          241 KAAQYFNIKLWRVPVDKE----FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~----~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      +.++.+|+ ++.++.++.    -.+|+++++  +++++++|.++|..|.||+..|     ++++.++++++||++++.+.
T Consensus        97 ~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~  168 (349)
T TIGR01364        97 KEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILS  168 (349)
T ss_pred             HHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccC
Confidence            88999999 877776532    245666555  4568999999999999999876     77778899999999975443


Q ss_pred             hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc--cCCCCccCCCCCchH
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL--YVSPTVAGSRPGGLI  394 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~--~~~~~~~gsr~~~~i  394 (438)
                      .           ++|...  .|++++++||+ ++|+|.|+++++++.+.+.... .+.+....  .......|+.+-..+
T Consensus       169 ~-----------~id~~~--~d~~~~ssqK~-lgP~Glg~l~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Tp~~~~i  233 (349)
T TIGR01364       169 R-----------PIDVSK--FGLIYAGAQKN-IGPAGLTVVIVRKDLLGRASRI-TPSMLNYKIHAENDSMYNTPPTFAI  233 (349)
T ss_pred             c-----------cCCHHH--ccEEEEecccc-cCCCceEEEEECHHHHhhcccC-CCCcchHHHHHhcCCCCCCCcHHHH
Confidence            3           355543  56999999998 5799999999987654332111 11110000  001233467777789


Q ss_pred             HHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          395 AGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       395 a~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +++.++++++-.+ |++++.++..++++++++.|+++||+..
T Consensus       234 ~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~  275 (349)
T TIGR01364       234 YVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYR  275 (349)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence            9999999999888 7999999999999999999999987643

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.80  E-value=3.2e-18  Score=172.92  Aligned_cols=221  Identities=14%  Similarity=0.147  Sum_probs=160.4

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----  240 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----  240 (438)
                      ..|...++|+    .+++++|.+.      +  ++++||+.|+..++.+..     .+|   ++|+++.+.|.+..    
T Consensus        62 ~~p~~~~Le~----~iA~~~g~~~------~--l~~~sG~~Ai~~al~~ll-----~~G---d~Vl~~~~~y~~~~~~~~  121 (400)
T PRK06234         62 GNPTSTEVEN----KLALLEGGEA------A--VVAASGMGAISSSLWSAL-----KAG---DHVVASDTLYGCTFALLN  121 (400)
T ss_pred             CCccHHHHHH----HHHHHhCCCc------E--EEEcCHHHHHHHHHHHHh-----CCC---CEEEEecCccchHHHHHH
Confidence            3466666665    5888888642      2  789999999998887765     377   89999999887644    


Q ss_pred             HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhh
Q 013675          241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLP  318 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~p  318 (438)
                      ..++..|++++.++.+     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++  |+++++|++|+.+...
T Consensus       122 ~~~~~~G~~v~~vd~~-----d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~  196 (400)
T PRK06234        122 HGLTRYGVEVTFVDTS-----NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ  196 (400)
T ss_pred             HHHhhCCeEEEEECCC-----CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence            4457789999999864     89999999999999999999999999999999999999997  9999999998754321


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhc-ccccCCCccCCCCccCCCCCchHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVA-VTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~-~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                              . +.   ..++|+++.|.+|++.++..  .|+++.++ ++.+..... ..++.          |.....  .
T Consensus       197 --------~-~l---~~g~Divv~S~sK~l~g~g~~~gG~v~~~~-~~~~~l~~~~~~~~~----------g~~l~p--~  251 (400)
T PRK06234        197 --------R-PL---QLGADVVVHSATKYLNGHGDVIAGFVVGKE-EFINQVKLFGIKDMT----------GSVIGP--F  251 (400)
T ss_pred             --------C-ch---hhCCcEEEeeccccccCCCCceeEEEEecH-HHHHHHHHHHHHHhc----------CCCCCH--H
Confidence                    1 22   23789999999999654432  57766654 332221100 01111          111121  1


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPL  437 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l  437 (438)
                      .+|..+  .|.+.+..+.++..++++++.+.|++.|.+.-+.
T Consensus       252 ~a~l~~--~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~  291 (400)
T PRK06234        252 EAFLII--RGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVY  291 (400)
T ss_pred             HHHHHH--hccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence            445554  3445667888888999999999999988775443

>PLN02368 alanine transaminase

Probab=99.80  E-value=1.7e-17  Score=167.66  Aligned_cols=245  Identities=11%  Similarity=0.096  Sum_probs=171.2

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..+|....+..++.+.+.+++.+..|.  ++++    |  ++|+|+++++.+++.++..    .+|   |+|+++.+.|+
T Consensus       100 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~----I--~it~Ga~~al~~~~~~l~~----~pG---d~Vli~~P~Y~  166 (407)
T PLN02368        100 LGAYSDSRGLPGVRKEVAEFIERRDGYPSDPEL----I--FLTDGASKGVMQILNAVIR----GEK---DGVLVPVPQYP  166 (407)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhh----E--EEcccHHHHHHHHHHHHcC----CCC---CEEEEeCCCCc
Confidence            345656667778888888888887775  4444    6  8999999999999988751    267   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      .+...++..|.+++.+|+++  ++.+|++++++++++      +|+++++++|+||||.+.+   +++|.++|++||+++
T Consensus       167 ~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~I  246 (407)
T PLN02368        167 LYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVL  246 (407)
T ss_pred             cHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999975  578999999999974      6899999999999999976   667888899999999


Q ss_pred             EEeccccchhhhhhhhcCCCCC------CCcc--CCCCccEEEeCCCCCCC--CCCCcEEEEE--ecccccccchhcc-c
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIP------PFDF--SVQGVTSISVDVHKYGL--APKGTSVVLY--RNREIRKHQFVAV-T  373 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p------~~~~--~~~gvdsis~s~hK~~~--~p~g~g~l~~--r~~~~~~~~~~~~-~  373 (438)
                      ++|++|+.+...  ....+ .+      .++.  ...+-.++..++.|..+  .+..+|+++.  .++++.+...... .
T Consensus       247 I~DE~Y~~l~y~--~~~~~-~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~  323 (407)
T PLN02368        247 LGDEVYQQNIYQ--DERPF-ISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASI  323 (407)
T ss_pred             EEEccccccccC--CCCCc-ccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcc
Confidence            999999876531  00000 00      0000  00112456668899843  5667999875  3444433221111 1


Q ss_pred             ccCCCccCCCCccCCCCCchHHHHHHHHHHHcH------------HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ------------EGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~------------~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .|.             ..  ..+++++...+..            +..++..+...+.++.+.+.|+++||+.+
T Consensus       324 ~~~-------------~~--~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~  382 (407)
T PLN02368        324 ALS-------------PN--VSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVC  382 (407)
T ss_pred             cCC-------------CC--cHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEe
Confidence            111             11  1144444444421            11234567778889999999999988754

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.80  E-value=1.1e-17  Score=168.42  Aligned_cols=227  Identities=17%  Similarity=0.077  Sum_probs=158.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++++|.+..        ++++|||+|+.+++.++.-    ++|   ++|+++.++|.++..++...|++++.++
T Consensus        33 ~le~~la~~~g~~~~--------v~~~sgt~al~~~l~al~~----~~G---d~Viv~~~~~~~~~~~~~~~G~~~~~~~   97 (380)
T TIGR03588        33 AFEEALAEYVGAKYA--------VAFNSATSALHIACLALGV----GPG---DRVWTTPITFVATANCALYCGAKVDFVD   97 (380)
T ss_pred             HHHHHHHHHHCCCeE--------EEEcCHHHHHHHHHHHcCC----CCC---CEEEeCCcchHHHHHHHHHcCCEEEEEe
Confidence            345568888888532        5677899999999988621    367   8999999999999999999999999999


Q ss_pred             CCC-CCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          255 VDK-EFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       255 ~~~-~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      +++ ++.+|+++++++++    ++|++|+.++   ++|...|+++|.++|+++|+++++|++++.+..            
T Consensus        98 ~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~------------  162 (380)
T TIGR03588        98 IDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIEDASHALGAE------------  162 (380)
T ss_pred             cCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEEECCCcccCc------------
Confidence            975 78899999999998    7899888765   479999999999999999999999999864322            


Q ss_pred             CccCCCCc----cEEEeCCC--CCCCCCCCcEEEEEecccccccchhc-ccccCCCc-----------cCCCCccCCCCC
Q 013675          330 FDFSVQGV----TSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVA-VTEWSGGL-----------YVSPTVAGSRPG  391 (438)
Q Consensus       330 ~~~~~~gv----dsis~s~h--K~~~~p~g~g~l~~r~~~~~~~~~~~-~~~~~g~~-----------~~~~~~~gsr~~  391 (438)
                      ++....|.    |+.++|+|  |++.+|. .|+++++++++.+..... ...+....           +......|....
T Consensus       163 ~~~~~~g~~~~~d~~~~S~~~~K~~~~~~-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~  241 (380)
T TIGR03588       163 YGGKPVGNCRYADATVFSFHPVKIITTAE-GGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYR  241 (380)
T ss_pred             cCCEeCCCccccceEEEecCCCCcccccC-ceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccC
Confidence            12222233    99999988  8876654 466777776654432111 00010000           000001111111


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                        +..+-+++.....+.+++..++..++++++.+.|+++|+++
T Consensus       242 --m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~  282 (380)
T TIGR03588       242 --MTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFT  282 (380)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence              11122222222235678999999999999999999988765

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK07337 aminotransferase; Validated

Probab=99.79  E-value=1.3e-17  Score=168.25  Aligned_cols=245  Identities=15%  Similarity=0.118  Sum_probs=168.1

Q ss_pred             HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675          150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP  227 (438)
Q Consensus       150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~  227 (438)
                      +.+...+..+...|...++..++++.+.+++.+.+|.  ++++    +  ++|+|+++|+.+++.++.     .+|   |
T Consensus        50 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---d  115 (388)
T PRK07337         50 EAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPER----I--VVTAGASAALLLACLALV-----ERG---D  115 (388)
T ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHh----E--EEecCcHHHHHHHHHHhc-----CCC---C
Confidence            3333333333344555566778888888888877775  4444    6  899999999999888875     367   8


Q ss_pred             eEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc
Q 013675          228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH  302 (438)
Q Consensus       228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~  302 (438)
                      +|+++.++|+.+...++..|.+++.+|+++  ++.+|++++++.+++++++|++++|+||||.+.+   +++|+++|+++
T Consensus       116 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~  195 (388)
T PRK07337        116 EVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRAR  195 (388)
T ss_pred             EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHC
Confidence            999999999999999999999999999974  5789999999999999999999999999999876   67888999999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccE-EEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCcc
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTS-ISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvds-is~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      ++++++|.+|..+..   +.  ...+...   .+.+. +..+.+|.+. ....+|+++..++ +..........+...  
T Consensus       196 ~~~ii~De~y~~~~~---~~--~~~~~~~---~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~-l~~~l~~~~~~~~~~--  264 (388)
T PRK07337        196 GGFTIVDEIYQGLSY---DA--APVSALS---LGDDVITINSFSKYFNMTGWRLGWLVVPEA-LVGTFEKLAQNLFIC--  264 (388)
T ss_pred             CCEEEEecccccccc---CC--CCcChhh---ccCCEEEEEechhhcCCchhheeeeecCHH-HHHHHHHHHHHhccC--
Confidence            999999999976542   10  0011111   12234 4558899842 3344899877543 332211111111100  


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHc---HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLG---QEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g---~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                               ..  ..+..+++..+.   .+.+++..++..+.++++.+.|+++
T Consensus       265 ---------~s--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~  306 (388)
T PRK07337        265 ---------AS--ALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL  306 (388)
T ss_pred             ---------CC--hHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     00  113333333332   2346666777778888888888875

>PRK08912 hypothetical protein; Provisional

Probab=99.79  E-value=2e-17  Score=166.91  Aligned_cols=242  Identities=17%  Similarity=0.135  Sum_probs=168.1

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCC--CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..|....+..++.+.+.+++.+.+|.+  ++ +    +  ++|+|+++++.+++.+..     .+|   ++|+++.++|+
T Consensus        57 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~----i--~~t~G~~~al~~~~~~~~-----~~g---d~Vlv~~p~y~  122 (387)
T PRK08912         57 NQYPPMMGLPELRQAVAAHYARFQGLDLDPETE----V--MVTSGATEALAAALLALV-----EPG---DEVVLFQPLYD  122 (387)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCccc----E--EEeCCcHHHHHHHHHHhc-----CCC---CEEEEeCCCch
Confidence            345455667788888888888777753  43 3    6  899999999988888765     367   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          238 AYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      .+...++.+|++++.+|+++ ++.+|++++++.++++++++++++|+||||.+.+   +++|.++|++|++++++|.+|+
T Consensus       123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~  202 (387)
T PRK08912        123 AYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWE  202 (387)
T ss_pred             hhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhh
Confidence            99999999999999999975 7889999999999989999999999999999977   6779999999999999999997


Q ss_pred             chhhhhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675          314 GFVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~  390 (438)
                      .+...   ...+ .+-... ...+.+++..+.+|. ++.+|  +|+++... ++..........+.        .  +-+
T Consensus       203 ~~~~~---~~~~-~~~~~~~~~~~~~i~~~S~SK~-~g~~GlRiG~~~~~~-~~~~~l~~~~~~~~--------~--~~~  266 (387)
T PRK08912        203 HVVFD---GRRH-IPLMTLPGMRERTVKIGSAGKI-FSLTGWKVGFVCAAP-PLLRVLAKAHQFLT--------F--TTP  266 (387)
T ss_pred             hcccC---CCCC-cChhhCCCccCceEEEeechhh-ccCcCceeEEEecCH-HHHHHHHHHHhhcc--------c--cCC
Confidence            65431   1010 110111 112347888999998 55445  89987654 33322111110000        0  001


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .....++..++. -..+.+++..++..+.++++.+.|++. |++
T Consensus       267 ~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  308 (387)
T PRK08912        267 PNLQAAVAYGLG-KPDDYFEGMRADLARSRDRLAAGLRRI-GFP  308 (387)
T ss_pred             hHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence            101112222221 123445677777888889999999876 443

>PLN02656 tyrosine transaminase

Probab=99.79  E-value=1.6e-17  Score=168.75  Aligned_cols=254  Identities=16%  Similarity=0.142  Sum_probs=174.4

Q ss_pred             HHHHHHHHhhccC-CCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          147 LINEACSMFAHTN-PLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       147 ~~~~~~~~~~~~n-~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      .+.+++...+..+ ...|...++..++++.+.+++.+..|.  ++++    +  ++|+|+++++.+++.++.     .+|
T Consensus        52 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g  120 (409)
T PLN02656         52 VAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDD----V--FITSGCTQAIDVALSMLA-----RPG  120 (409)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCccc----E--EEeCChHHHHHHHHHHHh-----CCC
Confidence            3344443333333 234545567777888888887776654  4444    6  899999999999998875     377


Q ss_pred             CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCcccc---CHHHHHHH
Q 013675          224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGEL  298 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id---di~~I~~l  298 (438)
                         |+|+++.++|+.+...+...|++++.+|+++  ++.+|+++++++++++++++++++|+||||.+.   ++++|.++
T Consensus       121 ---d~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~  197 (409)
T PLN02656        121 ---ANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAET  197 (409)
T ss_pred             ---CeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHH
Confidence               8999999999999999999999999999863  578999999999999999999999999999994   58899999


Q ss_pred             HHHcCCeEEEeccccchhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCC-CCCCCCcEEEEEecc-------cccccch
Q 013675          299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNR-------EIRKHQF  369 (438)
Q Consensus       299 a~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~-------~~~~~~~  369 (438)
                      |+++|+++++|++|+.+...     +...+++ .+....-.++..|+.|. +..+..+|+++..++       ++.....
T Consensus       198 a~~~~~~ii~De~y~~~~~~-----~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~  272 (409)
T PLN02656        198 AEKLKILVIADEVYGHLAFG-----SNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIK  272 (409)
T ss_pred             HHHcCCEEEEehhhhhcccC-----CCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHH
Confidence            99999999999999866531     1000111 11111124667788998 556677999887532       2222111


Q ss_pred             hcccccCCCccCCCCccCCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       370 ~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      .....+           +.-+   ...+.++...+   ....+++..++..+.++.+.+.|++++++
T Consensus       273 ~~~~~~-----------~~~s---~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~  325 (409)
T PLN02656        273 KYFDIL-----------GGPA---TFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCI  325 (409)
T ss_pred             HHHhhh-----------cCCC---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            100000           0001   11333333333   23457777788888888999999887653

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.79  E-value=3.4e-18  Score=169.74  Aligned_cols=225  Identities=18%  Similarity=0.182  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|+++++    +  ++|+|+++++..+++++.     .+|   ++|+++.+.|+.+...++..|++++.+
T Consensus        57 ~~lr~~ia~~~~~~~~~----i--~~~~G~~~~l~~~~~~l~-----~~g---d~v~~~~p~y~~~~~~~~~~g~~~~~~  122 (346)
T TIGR01141        57 AELKQALADYYGVDPEQ----I--LLGNGSDEIIELLIRAFL-----EPG---DAVLVPPPTYSMYEISAKIHGAEVVKV  122 (346)
T ss_pred             HHHHHHHHHHhCcChHH----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEEcCCCHHHHHHHHHHcCCeEEEe
Confidence            35667788999987765    6  899999999988887764     266   899999999988888999999999999


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      |+++++.+|+++++++++++|++|++++|+||||.+.|++++.++|+.+  ++++++|++|+.+...     +...+..+
T Consensus       123 ~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~-----~~~~~~~~  197 (346)
T TIGR01141       123 PLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGE-----PSTLPLLA  197 (346)
T ss_pred             ccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCC-----ccHHHHHh
Confidence            9988888999999999988999999999999999999999999999887  9999999998744321     00000011


Q ss_pred             cCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HHH
Q 013675          332 FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EGY  409 (438)
Q Consensus       332 ~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g~  409 (438)
                        ....+++..+.+|++. .+.++|+++.+ +++.+........|..          +     ..++.++...+.. ..+
T Consensus       198 --~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~~l~~~~~~  259 (346)
T TIGR01141       198 --EYPNLIVLRTLSKAFGLAGLRIGYAIAN-AEIIDALNKVRAPFNL----------S-----RLAQAAAIAALRDDDFI  259 (346)
T ss_pred             --hCCCEEEEehhhHhhhchhhhceeeecC-HHHHHHHHhccCCCCC----------C-----HHHHHHHHHHhCCHHHH
Confidence              1123566778899952 23448987764 4433321111111110          0     1133333333322 247


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          410 LENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++..++..++++++.+.|+++||+++
T Consensus       260 ~~~~~~~~~~~~~l~~~L~~~~g~~~  285 (346)
T TIGR01141       260 EKTVEEINAERERLYDGLKKLPGLEV  285 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            77888889999999999998877653

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK05939 hypothetical protein; Provisional

Probab=99.79  E-value=1.2e-17  Score=168.34  Aligned_cols=233  Identities=13%  Similarity=0.086  Sum_probs=162.5

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc---HHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA---YDK  241 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s---~~~  241 (438)
                      ..|....+|+    .++++.|....        +.+++|+.|+..++.++.     ++|   |+|+++...|++   +..
T Consensus        45 g~p~~~~lE~----~la~leg~~~~--------v~~ssG~~Ai~~~l~all-----~~G---d~Vv~~~~~y~~t~~~~~  104 (397)
T PRK05939         45 GTPTTAALEA----KITKMEGGVGT--------VCFATGMAAIAAVFLTLL-----RAG---DHLVSSQFLFGNTNSLFG  104 (397)
T ss_pred             CCHHHHHHHH----HHHHHhCCCeE--------EEeCCHHHHHHHHHHHHc-----CCC---CEEEECCCccccHHHHHH
Confidence            4566666666    58888887642        567778999999988764     377   899999988765   344


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .+..+|++++.+++.     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++...     
T Consensus       105 ~l~~~G~~v~~v~~~-----d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~-----  174 (397)
T PRK05939        105 TLRGLGVEVTMVDAT-----DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW-----  174 (397)
T ss_pred             HHHhcCCEEEEECCC-----CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc-----
Confidence            567789999999864     8999999999999999999999999999999999999999999999999986432     


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC-cEEEEEecccccccch----hcccccCCCcc----CC---CCccCCC
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIRKHQF----VAVTEWSGGLY----VS---PTVAGSR  389 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~~~~~----~~~~~~~g~~~----~~---~~~~gsr  389 (438)
                             .++....|+|++..+.|||+.++.+ .|.++..+.......+    ....++....+    ..   ....|..
T Consensus       175 -------~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  247 (397)
T PRK05939        175 -------LFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGAT  247 (397)
T ss_pred             -------ccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCC
Confidence                   2344456899999999999655322 3444443222110000    00000000000    00   0011222


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      ...  ..+|..+  .|.+.+..+.++..+++..+++.|++.|.++-+.|
T Consensus       248 ~~p--~~a~l~~--rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~y  292 (397)
T PRK05939        248 LSS--EAAHRIA--IGAETLALRVDRSCSNALALAQFLEAHPKVARVYY  292 (397)
T ss_pred             CCH--HHHHHHH--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            222  2455554  57788899999999999999999999998765444

>PRK08363 alanine aminotransferase; Validated

Probab=99.79  E-value=1.5e-17  Score=168.43  Aligned_cols=246  Identities=16%  Similarity=0.155  Sum_probs=167.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      |...++..++++.+.+++...+|  .++++    +  ++|+|+++++.+++.++.     .+|   ++|+++.++|+.+.
T Consensus        66 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~it~G~~~al~~~~~~~~-----~~g---d~Vl~~~p~y~~~~  131 (398)
T PRK08363         66 YGPSEGLPELREAIVKREKRKNGVDITPDD----V--RVTAAVTEALQLIFGALL-----DPG---DEILIPGPSYPPYT  131 (398)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCCChhh----E--EEeCCHHHHHHHHHHHhC-----CCC---CEEEEcCCCCcchH
Confidence            33456677788877777776656  44544    6  899999999999998875     377   89999999999999


Q ss_pred             HHHhhcCcEEEEe-eCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          241 KAAQYFNIKLWRV-PVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       241 ~a~~~~Gi~v~~v-~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      ..++.+|.+++.+ +.++ ++.+|+++++++++++++++++++|+||||.+.+   +++|.++|+++|+++++|++|+.+
T Consensus       132 ~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~  211 (398)
T PRK08363        132 GLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLM  211 (398)
T ss_pred             HHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhh
Confidence            9999999998888 5554 5679999999999989999999999999999977   889999999999999999999865


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEe-cccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYR-NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      ...     +...+........-.++..+++|. +..+.++|+++.+ ++++..........+...     ....+.+  .
T Consensus       212 ~~~-----~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~s~~--~  279 (398)
T PRK08363        212 TYE-----GKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARI-----RLCPNTP--A  279 (398)
T ss_pred             ccC-----CcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcc-----cccCChH--H
Confidence            321     100000111111113556789999 5566789998873 332221100000000000     0000111  1


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++..++.. ..+.+++..++..+..+++.+.|+++|++++
T Consensus       280 q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~  320 (398)
T PRK08363        280 QFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIST  320 (398)
T ss_pred             HHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEe
Confidence            1122233321 3466777788888899999999988877653

>PRK08960 hypothetical protein; Provisional

Probab=99.79  E-value=3.1e-17  Score=165.47  Aligned_cols=248  Identities=14%  Similarity=0.119  Sum_probs=166.4

Q ss_pred             HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675          150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP  227 (438)
Q Consensus       150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~  227 (438)
                      +++......+...|...++..++.+.+.+++.+.+|.  ++++    +  ++|+|+++++.+++.++.     .+|   +
T Consensus        52 ~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~it~G~~~al~~~~~~~~-----~~g---d  117 (387)
T PRK08960         52 AAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPER----I--LVTPGGSGALLLASSLLV-----DPG---K  117 (387)
T ss_pred             HHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhh----E--EEccCcHHHHHHHHHHhc-----CCC---C
Confidence            3333333333344555667777888888888776664  4444    6  899999999999998875     377   8


Q ss_pred             eEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc
Q 013675          228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH  302 (438)
Q Consensus       228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~  302 (438)
                      +|+++.++|+.+...++..|.+++.+|+++  ++.+|+++++++++++++++++++|+||||.+.+   +++|+++|+++
T Consensus       118 ~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~  197 (387)
T PRK08960        118 HWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRAR  197 (387)
T ss_pred             EEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999975  4679999999999999999999999999999987   55777789999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCcc
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      |+++++|++|..+...  ..  . .+...  ...-.++..|.+|. ++.+|  +|+++..+ ++.+........+..   
T Consensus       198 ~~~li~De~Y~~~~~~--~~--~-~~~~~--~~~~vi~~~S~SK~-~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~---  265 (387)
T PRK08960        198 GGHLVVDEIYHGLTYG--VD--A-ASVLE--VDDDAFVLNSFSKY-FGMTGWRLGWLVAPP-AAVPELEKLAQNLYI---  265 (387)
T ss_pred             CCEEEEEccccccccC--CC--C-CChhh--ccCCEEEEeecccc-cCCcccEEEEEEcCH-HHHHHHHHHHhhhcc---
Confidence            9999999999765321  00  0 11111  11124667789998 44444  99987754 333221111111100   


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                           ..+...  ..++.+++..-..+.+.+..+...+..+.+.+.|+++
T Consensus       266 -----~~s~~~--q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~  308 (387)
T PRK08960        266 -----SASTPA--QHAALACFEPETLAILEARRAEFARRRDFLLPALREL  308 (387)
T ss_pred             -----CCCHHH--HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 001111  1122222321112445566667777788888888875

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=1e-17  Score=170.42  Aligned_cols=227  Identities=17%  Similarity=0.125  Sum_probs=160.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi~v  250 (438)
                      ++.+.++++.|.+..        +++++|++|+.+++.++.     ++|   ++|+++...|.+..    ..+..+|+++
T Consensus        67 ~le~~lA~l~g~~~a--------l~~~SG~~Ai~~al~all-----~pG---d~VIv~~~~y~~t~~~~~~~~~~~G~~v  130 (427)
T PRK05994         67 VLEERVAALEGGTAA--------LAVASGHAAQFLVFHTLL-----QPG---DEFIAARKLYGGSINQFGHAFKSFGWQV  130 (427)
T ss_pred             HHHHHHHHHhCCCcE--------EEEcCHHHHHHHHHHHHh-----CCC---CEEEEecCcchhHHHHHHHHHHhcCcEE
Confidence            444568899988642        789999999999998875     377   89999999988643    4467789999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.++.+     |+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++....            .
T Consensus       131 ~~vd~~-----d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~------------~  193 (427)
T PRK05994        131 RWADAD-----DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL------------I  193 (427)
T ss_pred             EEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc------------C
Confidence            998864     89999999999999999999999999999999999999999999999999864322            1


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC-cEEEEEeccc--ccc-cc--hhcc-cccCCCccCC----------------CCccC
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNRE--IRK-HQ--FVAV-TEWSGGLYVS----------------PTVAG  387 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~--~~~-~~--~~~~-~~~~g~~~~~----------------~~~~g  387 (438)
                      +....|+|+++.|.|||+.++.+ .|.+++....  +.. ..  +... ....++....                ....|
T Consensus       194 ~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  273 (427)
T PRK05994        194 RPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLG  273 (427)
T ss_pred             CccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcC
Confidence            12246899999999999655543 4544543221  100 00  0000 0000110000                00112


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      ......  .+|..+  .|.+.+..+.++..+++.++.+.|+++|+++-+.|
T Consensus       274 ~~~~~~--~A~l~~--~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~y  320 (427)
T PRK05994        274 PAISPF--NAFLIL--TGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNY  320 (427)
T ss_pred             CCCCHH--HHHHHH--cCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            221111  344443  56688899999999999999999999999876554

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.79  E-value=1.3e-17  Score=168.56  Aligned_cols=229  Identities=16%  Similarity=0.124  Sum_probs=158.7

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675          168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      +...+..++++.+++++|.+.      +  ++++||++|+..++.++.     ++|   |+|+++.+.|+++...++..+
T Consensus        80 G~~~~~~~le~~ia~~~g~~~------~--ii~~~~~~a~~~~~~~l~-----~~g---d~vi~~~~~~~s~~~~~~~~~  143 (393)
T TIGR01822        80 GTQDIHKELEAKIAAFLGTED------T--ILYASCFDANGGLFETLL-----GAE---DAIISDALNHASIIDGVRLCK  143 (393)
T ss_pred             CChHHHHHHHHHHHHHhCCCc------E--EEECchHHHHHHHHHHhC-----CCC---CEEEEeccccHHHHHHHHhcC
Confidence            445556677788999999852      2  677899999998887764     377   999999999999999988888


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .+.+.++     .+|++++++++++      +|++|+..+++|++|.+.|+++|+++|++||+++++|++|+.+..+   
T Consensus       144 ~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~---  215 (393)
T TIGR01822       144 AKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLG---  215 (393)
T ss_pred             CceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcC---
Confidence            7765443     3789999999875      7889999999999999999999999999999999999998533321   


Q ss_pred             hcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          322 KLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       322 ~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                      ..|.. .+..+. ..++|+++.++||++.++ ..|+++.+ +++..........+        ...++.+...+++..++
T Consensus       216 ~~~~~~~~~~~~-~~~~di~~~s~sK~l~g~-r~G~~~~~-~~~~~~l~~~~~~~--------~~~~~~~~~~~~a~~~a  284 (393)
T TIGR01822       216 PTGRGSHELCGV-MGRVDIITGTLGKALGGA-SGGFTTAR-KEVVELLRQRSRPY--------LFSNSLPPAVVGASIKV  284 (393)
T ss_pred             CCCCchHHhcCC-CCCCeEEEEEChHHhhCC-CcEEEEeC-HHHHHHHHHhCccc--------eecCCCCHHHHHHHHHH
Confidence            01100 001121 236899999999995444 56886654 44333211110000        11122222333445556


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ++.+  ++.++..++..++++++.+.|++. |++
T Consensus       285 l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~  315 (393)
T TIGR01822       285 LEML--EASNELRDRLWANTRYFRERMEAA-GFD  315 (393)
T ss_pred             HHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            5543  345677788889999999999875 544

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.79  E-value=3.2e-17  Score=163.17  Aligned_cols=243  Identities=16%  Similarity=0.103  Sum_probs=164.8

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCC--CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..|...++..++++.+.+++.+..|.+  ++ +    +  ++|+|+++++..++.++.+     +|-+.++|+++.++|+
T Consensus        30 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~----I--iit~Gs~~ai~~~~~~~~~-----~g~~~d~Vl~~~p~y~   98 (350)
T TIGR03537        30 SQYPSALGTKALREAISGWFERRFGVKLDPDAQ----V--LPSAGSKEAIFHFPLVFID-----PEEDRRRVIFGTPGYP   98 (350)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----E--EEcCChHHHHHHHHHHHcC-----CCCCCceEEEcCCCCc
Confidence            334445567788888888888877753  43 3    6  8999999999998887753     4422369999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~  312 (438)
                      .+..+++.+|++++.+|+++  ++.+|+++++++++++++++++++|+||||.+.|   +++|+++|+++|+++++|++|
T Consensus        99 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y  178 (350)
T TIGR03537        99 VYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECY  178 (350)
T ss_pred             chHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccc
Confidence            99999999999999999973  5679999999999999999999999999999988   889999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      +.+...   .   ..+.+......-.++..+++|.. .....+|+++. ++++..........+..          +.+.
T Consensus       179 ~~~~~~---~---~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~----------~~~~  241 (350)
T TIGR03537       179 TEIYFG---E---PPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAG-DEKLISFLRKLRANFGV----------ASPD  241 (350)
T ss_pred             cccccC---C---CCCchhhcCcCCEEEEeecccccCCccccceeeec-CHHHHHHHHHHHHhhcc----------CCCH
Confidence            754321   1   01011100112246666899983 23344888754 44433322111111110          0111


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ....++..++.  ..+..++..++..++.+.+.+.|++. |++
T Consensus       242 ~~q~~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~  281 (350)
T TIGR03537       242 FVQAAAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKV-GLE  281 (350)
T ss_pred             HHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            11112222221  23455666777788888888888775 443

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07682 hypothetical protein; Validated

Probab=99.79  E-value=1.8e-17  Score=166.65  Aligned_cols=242  Identities=12%  Similarity=0.118  Sum_probs=170.3

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      .+|...++..++.+.+.+++.+.+|.+  +++   ++  ++|+|+++|+.++++++.+     +|   ++|+++.++|+.
T Consensus        51 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~---~i--~~t~G~~~al~~~~~~l~~-----~g---d~vl~~~p~y~~  117 (378)
T PRK07682         51 TSYTANAGLLELRQEIAKYLKKRFAVSYDPND---EI--IVTVGASQALDVAMRAIIN-----PG---DEVLIVEPSFVS  117 (378)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cE--EEeCChHHHHHHHHHHhCC-----CC---CEEEEeCCCchh
Confidence            335446778888888889988877764  321   26  8999999999999888753     67   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +...++..|.+++.++++.  ++.+|+++++++++++++++++++|+||||.+.+   +++|.++|++|++++++|++|+
T Consensus       118 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~  197 (378)
T PRK07682        118 YAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYA  197 (378)
T ss_pred             hHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhh
Confidence            9999999999999999863  6789999999999989999999999999999865   7899999999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      .+...  .. ...+..+. ....-.++..++.|.+. .+..+|+++.++ ++.+...... .+...         +-+  
T Consensus       198 ~~~~~--~~-~~~~~~~~-~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~-~~i~~l~~~~-~~~~~---------~~~--  260 (378)
T PRK07682        198 ELTYD--EA-YTSFASIK-GMRERTILISGFSKGFAMTGWRLGFIAAPV-YFSEAMLKIH-QYSMM---------CAP--  260 (378)
T ss_pred             hcccC--CC-CCChhhcc-cccCCEEEEecCcccccChhhhhhhhhcCH-HHHHHHHHHH-Hhhcc---------CCC--
Confidence            76531  00 00011111 11123577888899943 233489987654 3333211111 01000         001  


Q ss_pred             hHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          393 LIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       393 ~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                       ..++.++...+  |...+++..++..+.++++.+.|+++ +++
T Consensus       261 -~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~  302 (378)
T PRK07682        261 -TMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GLT  302 (378)
T ss_pred             -HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence             11333333333  34556777788888999999999876 543

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.79  E-value=7.2e-18  Score=169.08  Aligned_cols=214  Identities=17%  Similarity=0.134  Sum_probs=155.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----HHHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----DKAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~~a~~~~Gi~v  250 (438)
                      ++.+.++++.|.+..        +++++|+.|+.+++. +.     ++|   ++|+++.+.|.+.    ...+...|+++
T Consensus        54 ~Le~~la~l~g~~~a--------l~~~SG~~Al~~~l~-~l-----~pG---d~Vi~~~~~y~~t~~~~~~~~~~~gi~v  116 (380)
T PRK06176         54 ALEELIADLEGGVKG--------FAFASGLAGIHAVFS-LF-----QSG---DHVLLGDDVYGGTFRLFDKVLVKNGLSC  116 (380)
T ss_pred             HHHHHHHHHhCCCCE--------EEECCHHHHHHHHHH-Hc-----CCC---CEEEEcCCChhHHHHHHHHHHHhcCeEE
Confidence            344468999987542        677888888876553 32     377   8999999888754    34566779999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.++.+     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++....   .     . +.
T Consensus       117 ~~vd~~-----d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~---~-----~-p~  182 (380)
T PRK06176        117 TIIDTS-----DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY---Q-----N-PL  182 (380)
T ss_pred             EEcCCC-----CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccccc---C-----C-cc
Confidence            988763     89999999999999999999999999999999999999999999999999874322   0     1 22


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                         ..|+|+++.|++||+.+|..  .|++..+++++..... ......|.          -.+  ....|..+  .|.+.
T Consensus       183 ---~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~-~~~~~~G~----------~~~--~~~~~l~~--~gl~t  244 (380)
T PRK06176        183 ---LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA-FFQNAIGG----------VLG--PQDSWLLQ--RGIKT  244 (380)
T ss_pred             ---ccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH-HHHHHhcC----------CCC--HHHHHHHH--hccCc
Confidence               45899999999999766653  5666666655432211 11111111          011  12445554  45567


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPL  437 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l  437 (438)
                      +..+.++..+++..+.+.|++.|.+.-+.
T Consensus       245 l~~R~~~~~~~a~~la~~L~~~p~v~~v~  273 (380)
T PRK06176        245 LGLRMEAHQKNALCVAEFLEKHPKVEKVY  273 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeEEE
Confidence            78888888899999999999998876544

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.79  E-value=1.1e-17  Score=167.12  Aligned_cols=233  Identities=19%  Similarity=0.121  Sum_probs=155.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      .+.+.++|+    .+++++|.+.        ++.+++||.|+.+++.++.-    ++|   ++|++|..++++...++..
T Consensus        24 g~~~~~fE~----~~a~~~g~~~--------~~~~~sgt~Al~~al~~l~~----~~g---deVi~p~~t~~~~~~ai~~   84 (363)
T PF01041_consen   24 GPYVEEFEK----EFAEYFGVKY--------AVAVSSGTSALHLALRALGL----GPG---DEVIVPAYTFPATASAILW   84 (363)
T ss_dssp             SHHHHHHHH----HHHHHHTSSE--------EEEESSHHHHHHHHHHHTTG----GTT---SEEEEESSS-THHHHHHHH
T ss_pred             CHHHHHHHH----HHHHHhCCCe--------EEEeCChhHHHHHHHHhcCC----CcC---ceEecCCCcchHHHHHHHH
Confidence            566666776    4788888653        38999999999999999542    367   9999999999999999999


Q ss_pred             cCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          246 FNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       246 ~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      .|++++.+++++ ++.+|+++++++|+++|++|+++|.   .|...|+++|.++|+++|++++.|+|++-+..       
T Consensus        85 ~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~-------  154 (363)
T PF01041_consen   85 AGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGAR-------  154 (363)
T ss_dssp             TT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT-E-------
T ss_pred             hccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCce-------
Confidence            999999999995 9999999999999999999999987   89999999999999999999999999753321       


Q ss_pred             CCCCCCccCCCCc--cEEEeCC--CCCCCCCCCcEEEEEecccccccchhccc-ccCCCcc--CCCCc-cCCCCCchHHH
Q 013675          325 YPIPPFDFSVQGV--TSISVDV--HKYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLY--VSPTV-AGSRPGGLIAG  396 (438)
Q Consensus       325 ~~~p~~~~~~~gv--dsis~s~--hK~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~~--~~~~~-~gsr~~~~ia~  396 (438)
                           ++-+..|-  |+.++|+  .|...++- .|+++++++++.++...... .+.....  ..... .|.....  ..
T Consensus       155 -----~~g~~~G~~gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm--~~  226 (363)
T PF01041_consen  155 -----YKGRPVGSFGDIAIFSFHPTKIITTGE-GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRM--SE  226 (363)
T ss_dssp             -----ETTEETTSSSSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B---BH
T ss_pred             -----eCCEeccCCCCceEecCCCCCCCcCCC-CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCccccc--HH
Confidence                 12121221  5555555  58864444 48888888776544321111 1100000  00000 1211111  12


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +-+++.....+.+++..++..++++++.+.|.+++++..
T Consensus       227 ~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~  265 (363)
T PF01041_consen  227 LQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKP  265 (363)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEE
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCccc
Confidence            233333333467889999999999999999999988743

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.79  E-value=1.5e-17  Score=158.98  Aligned_cols=260  Identities=18%  Similarity=0.141  Sum_probs=190.2

Q ss_pred             HHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675          146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT  225 (438)
Q Consensus       146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~  225 (438)
                      ..+.+++.......-+.|.  -...++-+.+..|.++..++....+  ++  ++++|.--++.++++++..     +|  
T Consensus        41 p~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e--~i--~~~p~VVpgi~~~I~~~T~-----~g--  107 (388)
T COG1168          41 PEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPE--WI--VFVPGVVPGISLAIRALTK-----PG--  107 (388)
T ss_pred             HHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcc--eE--EEcCcchHhHHHHHHHhCc-----CC--
Confidence            3445666666665555554  2334578889999999998865431  24  8999999999999999884     88  


Q ss_pred             CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC---CCccCHHHHHHhhccC-cEEEEEecCCCCCccc---cCHHHHHHH
Q 013675          226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRN-TVLIVGSAPGFPHGII---DPIQELGEL  298 (438)
Q Consensus       226 ~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~~-t~~vv~~~~~~~tG~i---ddi~~I~~l  298 (438)
                       |.|++..+.|+.|.++.+..|-++...|+-.   .+.||.++||+++.+. ++++++|+|+||+|.+   +.+.+|++|
T Consensus       108 -d~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~el  186 (388)
T COG1168         108 -DGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAEL  186 (388)
T ss_pred             -CeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHH
Confidence             9999999999999999999999999999863   4568999999998764 6999999999999988   668999999


Q ss_pred             HHHcCCeEEEeccccchhhhhhhhcCC-CCCCC--ccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchh-ccc
Q 013675          299 ALSHGTCLHVDLCLGGFVLPFAKKLGY-PIPPF--DFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFV-AVT  373 (438)
Q Consensus       299 a~~~~i~lhVD~a~gg~~~pf~~~~g~-~~p~~--~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~-~~~  373 (438)
                      |++||+.++.|+.+..+++.     |+ .+|..  +.......+.+.++.|.++ ++..++.+++.+++++..-.. ...
T Consensus       187 c~kh~v~VISDEIHaDlv~~-----g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~  261 (388)
T COG1168         187 CLRHGVRVISDEIHADLVLG-----GHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR  261 (388)
T ss_pred             HHHcCCEEEeeccccccccc-----CCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH
Confidence            99999999999999876652     21 12211  1122223566667799954 445688888988877543111 110


Q ss_pred             ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      .-.++          .+.-.+.+.-+|. ..|..++.+..+.+..+.+++.+.+.+ +|++++
T Consensus       262 ~~~~~----------~n~lg~~A~~aAY-~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v  313 (388)
T COG1168         262 NGLHG----------PSALGIIATEAAY-NQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKV  313 (388)
T ss_pred             hcCCC----------CchHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence            10000          1111133444444 369999999999999999999999987 788876

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.79  E-value=1.7e-17  Score=173.40  Aligned_cols=242  Identities=17%  Similarity=0.193  Sum_probs=164.1

Q ss_pred             CcccchhHHHHHHHHHHHHHHHh--CCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALL--GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~--g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      +|....+..++.+.+.+++.+..  +.++++    |  ++|+|+++++.+++.++.+     +|   |+|+++.+.|+.+
T Consensus       180 ~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~----I--~it~G~~eal~~~~~~l~~-----~G---d~Vli~~P~y~~y  245 (517)
T PRK13355        180 GYSDSKGLFSARKAIMQYAQLKGLPNVDVDD----I--YTGNGVSELINLSMSALLD-----DG---DEVLIPSPDYPLW  245 (517)
T ss_pred             CCCCCcChHHHHHHHHHHHHhcCCCCCChhH----E--EEeCcHHHHHHHHHHHhCC-----CC---CEEEEcCCCCcCH
Confidence            45556677777777777765543  345554    7  8999999999999988763     77   9999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ..+++..|.+++.+++++  ++.+|+++++++++++|++|++++|+||||.+.+   +++|.++|++||+++++|++|..
T Consensus       246 ~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~  325 (517)
T PRK13355        246 TACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDR  325 (517)
T ss_pred             HHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhh
Confidence            999999999999999875  5789999999999999999999999999999987   78899999999999999999976


Q ss_pred             hhhhhhhhcCCCCCCCccCCCCccEE-EeCCCCC-CCCCCCcEEEEEe-ccccccc---chhcccccCCCccCCCCccCC
Q 013675          315 FVLPFAKKLGYPIPPFDFSVQGVTSI-SVDVHKY-GLAPKGTSVVLYR-NREIRKH---QFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~~gvdsi-s~s~hK~-~~~p~g~g~l~~r-~~~~~~~---~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      +...     +...+++......+..+ ..++.|. +.++..+|+++.. ++++...   .......             .
T Consensus       326 ~~~~-----~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~-------------~  387 (517)
T PRK13355        326 LVMD-----GLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLAN-------------M  387 (517)
T ss_pred             hcCC-----CCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhc-------------C
Confidence            5431     10001111111222233 3567898 3455669998764 3322111   0000000             0


Q ss_pred             CCCchHHHHHHHHHHHcH----HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          389 RPGGLIAGAWAALMSLGQ----EGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +......+++++...+..    ..+.+..++..+.++++.+.|+++||+++
T Consensus       388 ~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~  438 (517)
T PRK13355        388 RLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISA  438 (517)
T ss_pred             cCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            000112244444444421    11222234455667889999988888754

>PRK06460 hypothetical protein; Provisional

Probab=99.79  E-value=1.3e-17  Score=167.26  Aligned_cols=215  Identities=13%  Similarity=0.066  Sum_probs=153.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCc----CcHHHHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH----SAYDKAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h----~s~~~a~~~~Gi~v  250 (438)
                      ++++.++++.|.+..        +++++|++|+..++.++.     ++|   |+|+++.+.+    ..+...++..|+++
T Consensus        49 ~L~~~lA~l~g~~~~--------v~~~sG~~ai~~~l~al~-----~~G---d~Vl~~~~~~~~ty~~~~~~~~~~G~~v  112 (376)
T PRK06460         49 ELTKKIVELENAEMG--------VAFSSGMGAISTTALALL-----KPG---NSVLVHRDMFGRSYRFFTDYLKNWGVNV  112 (376)
T ss_pred             HHHHHHHHHhCCCcE--------EEeCCHHHHHHHHHHHHh-----CCC---CEEEEecCCcCcHHHHHHHHHHhhCcEE
Confidence            444568999998642        456777899998888775     377   8999987654    34557788889999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.++.++     .+.+++.++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+..            .
T Consensus       113 ~~~~~~~-----~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~------------~  175 (376)
T PRK06460        113 DASNPGS-----DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN------------Q  175 (376)
T ss_pred             EEECCCC-----HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc------------C
Confidence            9888652     3456666678899999999999999999999999999999999999999864311            1


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      .....++|+++.+++|++.++.+  .|+++ .++++.+........| +.          -..  ...+|.++  .|.+.
T Consensus       176 ~~l~~~~divv~S~sK~l~G~~~~~~G~~~-~~~~l~~~l~~~~~~~-g~----------~~~--~~~a~~~l--~~~~~  239 (376)
T PRK06460        176 KPLELGADIVVHSASKFLAGHNDVIAGLAA-GYGKLLNVIDQMRRTL-GT----------SLD--PHAAYLTL--RGIKT  239 (376)
T ss_pred             ChhhcCCCEEEeecceeccCCCCceEEEEe-cCHHHHHHHHHHHHhc-CC----------CCC--HHHHHHHH--hchhh
Confidence            11124689999999999543332  56654 4455443221111111 11          011  12556665  36688


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      ++.+.+++.++++++.+.|++.|.++-+.|
T Consensus       240 l~~r~~~~~~n~~~l~~~L~~~p~v~~v~y  269 (376)
T PRK06460        240 LKIRMDVINRNAEQIAEFLEGHPKVVKVYY  269 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence            899999999999999999999988765443

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.78  E-value=1.2e-17  Score=170.93  Aligned_cols=242  Identities=14%  Similarity=0.092  Sum_probs=159.9

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      .+|..+++..++++.    +++++|.+.      +  ++|+|||+|+.+++.++.     ++|   | |+++.+.+.++.
T Consensus        72 ~~Y~~~~g~~~Lrea----ia~~~~~~~------v--v~t~ggt~A~~~~~~all-----~pG---D-Vii~~p~~~~~~  130 (460)
T PRK13238         72 EAYAGSRSYYRLEDA----VKDIFGYPY------T--IPTHQGRAAEQILFPVLI-----KKG---D-VVPSNYHFDTTR  130 (460)
T ss_pred             cccCCCCCHHHHHHH----HHHHhCCCc------E--EECCCHHHHHHHHHHHhC-----CCC---C-EEccCCcccchH
Confidence            356677787777764    667777642      4  899999999999988875     378   8 888988788888


Q ss_pred             HHHhhcCcEEEEeeCCC----------CCccCHHHHHHhhcc----CcEEEEEecCCCCCc-ccc---CHHHHHHHHHHc
Q 013675          241 KAAQYFNIKLWRVPVDK----------EFRADVKAIKKYINR----NTVLIVGSAPGFPHG-IID---PIQELGELALSH  302 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~----------~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG-~id---di~~I~~la~~~  302 (438)
                      ..+...|.+++.+|+++          .+.+|+++|+++|++    +|++|++++|+||+| .+.   ++++|+++|++|
T Consensus       131 ~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~  210 (460)
T PRK13238        131 AHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY  210 (460)
T ss_pred             HHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence            88889999999999863          244999999999984    799999999999998 554   478999999999


Q ss_pred             CCeEEEeccccchhhhhhhh--cCCCCCCCccC------CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675          303 GTCLHVDLCLGGFVLPFAKK--LGYPIPPFDFS------VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE  374 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~--~g~~~p~~~~~------~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~  374 (438)
                      |++++.|+|+..-..-|...  .|+.  .....      ....|++++++||.+++|.| |+++.+++++....-.....
T Consensus       211 gi~li~Daa~~~e~a~f~~~~e~g~~--~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~  287 (460)
T PRK13238        211 GIPVVIDAARFAENAYFIKQREPGYK--DKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCIL  287 (460)
T ss_pred             CCEEEEECcchhhhhhhhhhcccccc--CCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcccc
Confidence            99999999863211112110  1110  01110      12469999999999999987 88888875554332111111


Q ss_pred             cCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.|.     ...|..++....++..+++..-.+   +..+...+.+++|.+.|++. |+.+
T Consensus       288 ~~g~-----~t~~g~~~~~~~Ala~~l~e~~~~---~~~~~~~~~~~~l~~~L~~~-G~~~  339 (460)
T PRK13238        288 YEGF-----PTYGGLAGRDMEALAVGLYEGMDE---DYLAYRIGQVEYLGEGLEEA-GVPI  339 (460)
T ss_pred             cCCc-----ccccCcHHHHHHHHHhhHHHhhCh---HHHHHHHHHHHHHHHHHHHC-CCCe
Confidence            1111     111211222233444444322112   22333344578888888775 6654

>PRK12414 putative aminotransferase; Provisional

Probab=99.78  E-value=2.1e-17  Score=166.46  Aligned_cols=238  Identities=14%  Similarity=0.143  Sum_probs=167.4

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCC--C-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNK--E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..|...++..++.+++.+++++++|.+  + ++    +  ++|+|+++++.++++++.+     +|   ++|+++.++|.
T Consensus        60 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~----i--~it~g~~~al~~~~~~l~~-----~g---d~Vlv~~p~y~  125 (384)
T PRK12414         60 NQYAPMAGIAALREALAEKTERLYGARYDPASE----V--TVIASASEGLYAAISALVH-----PG---DEVIYFEPSFD  125 (384)
T ss_pred             CCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCc----E--EEECChHHHHHHHHHHhcC-----CC---CEEEEeCCCcc
Confidence            345455677888999999999999985  2 23    5  8999999999999988753     77   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCcccc---CHHHHHHHHHHcCCeEEEecccc
Q 013675          238 AYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id---di~~I~~la~~~~i~lhVD~a~g  313 (438)
                      .+...++..|.+++.+|+++ ++.+|++++++++++++++|++++|+||||.+.   ++++|+++|++||+++++|++|.
T Consensus       126 ~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~  205 (384)
T PRK12414        126 SYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYE  205 (384)
T ss_pred             chHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhh
Confidence            99999999999999999985 678999999999998999999999999999984   58889999999999999999997


Q ss_pred             chhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCC
Q 013675          314 GFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGS  388 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gs  388 (438)
                      .+...     +...+++. + ...+-.++..|++|.+. .+..+|+++..+ ++........  ..|..          +
T Consensus       206 ~~~~~-----~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~-~l~~~l~~~~~~~~~~~----------s  269 (384)
T PRK12414        206 HVVFD-----GARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPA-ELMDEIRKVHQFMVFSA----------D  269 (384)
T ss_pred             hccCC-----CCCccCcccCcCccCcEEEEecccccccCccceEEEEecCH-HHHHHHHHHHhheecCC----------C
Confidence            54421     10011111 1 11122477888999842 445589977654 3332211111  01110          1


Q ss_pred             CCCchHHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          389 RPGGLIAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .     ..++++...+.. ..+.+..+...+.++.+.+.|++. |++
T Consensus       270 ~-----~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~  310 (384)
T PRK12414        270 T-----PMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS-RFE  310 (384)
T ss_pred             c-----HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence            1     133333333321 234455666777888888888875 443

>PLN02187 rooty/superroot1

Probab=99.78  E-value=3.9e-17  Score=168.02  Aligned_cols=245  Identities=15%  Similarity=0.140  Sum_probs=170.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      .|...++..++.+.+.+++.+.+|.  ++++    |  ++|+|+++++.+++.++.+     +|   |+|+++.++|+.+
T Consensus       103 ~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~----I--~it~G~~~al~~~~~~l~~-----pG---d~Vlv~~P~y~~y  168 (462)
T PLN02187        103 SYGPGAGILPARRAVADYMNRDLPHKLTPED----I--FLTAGCNQGIEIVFESLAR-----PN---ANILLPRPGFPHY  168 (462)
T ss_pred             CCCCCCChHHHHHHHHHHHHHhcCCCCCccc----E--EEeCCHHHHHHHHHHHhcC-----CC---CEEEEeCCCCccH
Confidence            4445667777888888887766554  5554    6  8999999999999998863     78   9999999999999


Q ss_pred             HHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVD--KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ...++..|++++.+++.  .++.+|+++|+++++++++++++++|+||||.+.+   +++|+++|+++|+++++|++|+.
T Consensus       169 ~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~  248 (462)
T PLN02187        169 DARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDR  248 (462)
T ss_pred             HHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence            99999999999999985  36899999999999999999999999999999977   78899999999999999999987


Q ss_pred             hhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCC-CCCCCCcEEEEEeccccc----ccchhcccccCCCccCCCCccCC
Q 013675          315 FVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIR----KHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~----~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      +...     +.+.+++ .+....-.++..++.|. +..+..+|+++..+++..    .........|...        ..
T Consensus       249 l~f~-----~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~--------~~  315 (462)
T PLN02187        249 TIFG-----DNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVT--------PD  315 (462)
T ss_pred             cccC-----CCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhcccc--------CC
Confidence            5531     0000011 11111113566688999 555567999887554311    1111111111000        00


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      .+.....++.+++..-..+.+++..+...+.++++.+.|+++|++
T Consensus       316 ~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~  360 (462)
T PLN02187        316 PATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCV  360 (462)
T ss_pred             CCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            001111222233322134567778888888999999999887654

>PRK07324 transaminase; Validated

Probab=99.78  E-value=2e-17  Score=165.98  Aligned_cols=238  Identities=15%  Similarity=0.128  Sum_probs=160.8

Q ss_pred             ccCCCCcccchhHHHHHHHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC
Q 013675          157 HTNPLHLDIFQSVARFEAEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA  235 (438)
Q Consensus       157 ~~n~~~~~~~~~~~~~e~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~  235 (438)
                      ....+.|....+..++++.    ++++++ .++++    +  ++|+|+++|+.+++.++.     .+|   ++|+++.++
T Consensus        52 ~~~~~~Y~~~~G~~~lr~~----ia~~~~~~~~~~----v--i~t~G~~~al~~~~~~l~-----~~g---d~Vl~~~P~  113 (373)
T PRK07324         52 GQKKLTYGWIEGSPEFKEA----VASLYQNVKPEN----I--LQTNGATGANFLVLYALV-----EPG---DHVISVYPT  113 (373)
T ss_pred             hcCCccCCCCCCCHHHHHH----HHHHhcCCChhh----E--EEcCChHHHHHHHHHHhC-----CCC---CEEEEcCCC
Confidence            3334455555565555554    555553 55655    6  899999999999998875     377   899999999


Q ss_pred             cCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEec
Q 013675          236 HSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL  310 (438)
Q Consensus       236 h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~  310 (438)
                      |..+...++..|++++.+|+++  ++.+|+++++++++++|+++++++|+||||.+.+   +++|+++|+++|+++++|+
T Consensus       114 y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De  193 (373)
T PRK07324        114 YQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDE  193 (373)
T ss_pred             chhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence            9999999999999999999975  4578999999999999999999999999999988   8899999999999999999


Q ss_pred             cccchhhhhhhhcCCCCCC-CccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675          311 CLGGFVLPFAKKLGYPIPP-FDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~-~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      +|..+...     +. .+. .+.  ..-.+...++.|... .+..+|+++. ++++......... +.       +... 
T Consensus       194 ~y~~l~~~-----~~-~~s~~~~--~~~~I~~~s~SK~~~~~G~RiG~i~~-~~~li~~~~~~~~-~~-------~~~~-  255 (373)
T PRK07324        194 VYRPLDED-----GS-TPSIADL--YEKGISTNSMSKTYSLPGIRVGWIAA-NEEVIDILRKYRD-YT-------MICA-  255 (373)
T ss_pred             cccccccC-----CC-CCChhhc--cCCEEEEecchhhcCCccceeEEEec-CHHHHHHHHHHhC-cE-------EecC-
Confidence            99765421     00 111 111  112355668889832 3345799876 4444432211110 00       0000 


Q ss_pred             CCCchHHHHHHHHHHHc--HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          389 RPGGLIAGAWAALMSLG--QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                        .  ....+++...+.  ..-+++..+...++.+.+.+.|++.++++
T Consensus       256 --~--~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~  299 (373)
T PRK07324        256 --G--VFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVS  299 (373)
T ss_pred             --C--hHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence              0  113333333332  22344555556677778888888776654

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.78  E-value=4.6e-17  Score=164.89  Aligned_cols=234  Identities=17%  Similarity=0.190  Sum_probs=164.4

Q ss_pred             chhHHHHHHHHHHHHHHHhCC--CC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGN--KE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~--~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      .++..++.+.+.+++.+..|.  ++ ++    +  ++|+|+++++.+++.++.     .+|   |+|+++.++|+.+...
T Consensus        68 ~~G~~~lr~aia~~~~~~~g~~~~~~~~----I--~it~G~~~al~~~~~~~~-----~~G---d~Vlv~~P~y~~~~~~  133 (399)
T PRK07681         68 LSGIQEFHEAVTEYYNNTHNVILNADKE----V--LLLMGSQDGLVHLPMVYA-----NPG---DIILVPDPGYTAYETG  133 (399)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCCCCe----E--EECCCcHHHHHHHHHHhC-----CCC---CEEEECCCCccchHHH
Confidence            357777888888888877675  44 33    6  899999999999988875     377   8999999999999999


Q ss_pred             HhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhh
Q 013675          243 AQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ++..|++++.+|+++  ++.+|++++++++.+++++|++++|+||||.+.+   +++|.++|+++|+++++|++|+.+..
T Consensus       134 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~  213 (399)
T PRK07681        134 IQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYF  213 (399)
T ss_pred             HHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhee
Confidence            999999999999975  4678999999999889999999999999999988   77889999999999999999986643


Q ss_pred             hhhhhcCCCCCCCccC-CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhccc--ccCCCccCCCCccCCCCCch
Q 013675          318 PFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVT--EWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~-~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~--~~~g~~~~~~~~~gsr~~~~  393 (438)
                      .   .... .+-.... .....++..+++|.+. .+..+|+++. ++++.+.......  .|..          +     
T Consensus       214 ~---~~~~-~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~----------s-----  273 (399)
T PRK07681        214 D---GNKP-ISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG-NEEIVRALTQFKSNTDYGV----------F-----  273 (399)
T ss_pred             C---CCCC-CChhhCCCCcccEEEEeecccccCCccceeEEEec-CHHHHHHHHHHHhhcccCC----------C-----
Confidence            1   0000 0001111 1123466778899842 3344899865 4444432211110  1100          0     


Q ss_pred             HHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          394 IAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       394 ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .....++...+  +...+++..+...+..+++.+.|++. +++
T Consensus       274 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  315 (399)
T PRK07681        274 LPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-GWN  315 (399)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            11223333333  33455666777788888899999876 554

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.78  E-value=4.7e-17  Score=164.51  Aligned_cols=243  Identities=15%  Similarity=0.149  Sum_probs=166.8

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      ..|....+..++.+++.+++.+.+|.+  +++   .+  ++|+|+++++..++.++.     .+|   |+|+++.++|+.
T Consensus        67 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~---~i--~vt~G~~~al~~~~~~~~-----~~g---d~Vlv~~P~y~~  133 (394)
T PRK05942         67 HGYPPFEGTASFRQAITDWYHRRYGVELDPDS---EA--LPLLGSKEGLTHLALAYV-----NPG---DVVLVPSPAYPA  133 (394)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCC---eE--EEccChHHHHHHHHHHhC-----CCC---CEEEEcCCCCcc
Confidence            344445566788888888888877753  332   14  789999999999988875     377   999999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +...+...|++++.+|+++  ++.+|+++++++++++++++++++|+||||.+.+   +++|.++|+++|+++++|++|+
T Consensus       134 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~  213 (394)
T PRK05942        134 HFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYA  213 (394)
T ss_pred             hHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccch
Confidence            9999999999999999974  4679999999999999999999999999999987   7789999999999999999997


Q ss_pred             chhhhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675          314 GFVLPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~  390 (438)
                      .+..   +  +...+++ .+. .....++..++.|.+ ..+..+|+++.+ +++.+..........          .+.+
T Consensus       214 ~~~~---~--~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~-~~l~~~l~~~~~~~~----------~~~~  277 (394)
T PRK05942        214 ELAF---D--GYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN-RHIIQGLRTLKTNLD----------YGIF  277 (394)
T ss_pred             hhcc---C--CCCCCChhhCCCccccEEEEecchhccCChhhheeeeecC-HHHHHHHHHHHhhcc----------cCCC
Confidence            6542   1  1000111 111 123345667778973 344558998764 444332111111000          0011


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .....++-.+++ ...+..++..++..+..+++.+.|++. +++
T Consensus       278 ~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~  319 (394)
T PRK05942        278 SALQKAAETALQ-LPDSYLQQVQERYRTRRDFLIQGLGEL-GWN  319 (394)
T ss_pred             HHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            111112223332 234566777777888888888888765 443

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.78  E-value=2.8e-17  Score=166.16  Aligned_cols=232  Identities=17%  Similarity=0.125  Sum_probs=164.1

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH---
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA---  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a---  242 (438)
                      .|....+|+    .++++.|....        +.+++|+.|+.+++.++.     ++|   |+||++...|.+....   
T Consensus        60 nPtv~~lE~----~la~leg~~~a--------v~~~SG~aAi~~al~all-----~~G---D~VI~~~~~Y~~T~~~~~~  119 (432)
T PRK06702         60 NPTLAAFEQ----KLAELEGGVGA--------VATASGQAAIMLAVLNIC-----SSG---DHLLCSSTVYGGTFNLFGV  119 (432)
T ss_pred             CcHHHHHHH----HHHHHhCCCcE--------EEECCHHHHHHHHHHHhc-----CCC---CEEEECCCchHHHHHHHHH
Confidence            456666666    58888887532        789999999999998874     378   9999999998765554   


Q ss_pred             -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                       +..+|++++.++.    .+|+++++++|+++|++|++.+|+||++.+.|+++|+++|+++|+++++|++++.   |++ 
T Consensus       120 ~l~~~Gi~v~~vd~----~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~t---P~~-  191 (432)
T PRK06702        120 SLRKLGIDVTFFNP----NLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLAT---PYL-  191 (432)
T ss_pred             HHHHCCCEEEEECC----CCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCc---hhh-
Confidence             6778999998864    4799999999999999999999999999999999999999999999999999853   221 


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecc---------ccccc--chhcccccCCC----c-----
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNR---------EIRKH--QFVAVTEWSGG----L-----  379 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~---------~~~~~--~~~~~~~~~g~----~-----  379 (438)
                              .+....|+|++..|..||..+..+  .|+++.+..         .+...  .+.. ..|...    .     
T Consensus       192 --------~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~  262 (432)
T PRK06702        192 --------CQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHG-VSYVQNFGAAAYIVKA  262 (432)
T ss_pred             --------CChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccc-cchhhccchhhHHHHH
Confidence                    223456899999999999655433  233321211         11100  0000 000000    0     


Q ss_pred             c-CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          380 Y-VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       380 ~-~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      . ......|......  .+|.++  .|.+.+..+.++..+++..+++.|++.|.++.+.|
T Consensus       263 ~~~~~~~~g~~~sp~--~a~l~~--rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~y  318 (432)
T PRK06702        263 RVQLLRDYGNCMSPF--NAYISN--IGLETLHLRMERHSENALAVAKWLADHERIEWVNY  318 (432)
T ss_pred             HHHHHHHccCCCCHH--HHHHHH--hccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEEC
Confidence            0 0000113322322  566665  45577889999999999999999999998875544

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.78  E-value=1.1e-17  Score=167.27  Aligned_cols=213  Identities=21%  Similarity=0.208  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----HHHHhhcCcE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----DKAAQYFNIK  249 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~~a~~~~Gi~  249 (438)
                      .++.+.++++.|.+..        ++++||++|+.+++ ++.     .+|   ++|+++.+.|++.    ...+..+|++
T Consensus        55 ~~le~~la~l~g~~~~--------~~~~sG~~ai~~~~-~ll-----~~G---d~Vl~~~~~y~~t~~~~~~~~~~~G~~  117 (366)
T PRK08247         55 GVLEQAIADLEGGDQG--------FACSSGMAAIQLVM-SLF-----RSG---DELIVSSDLYGGTYRLFEEHWKKWNVR  117 (366)
T ss_pred             HHHHHHHHHHhCCCcE--------EEEcCHHHHHHHHH-HHh-----CCC---CEEEEecCCcCcHHHHHHHHhhccCce
Confidence            3444579999998642        78899999998765 333     267   8999999998873    4456678999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      ++.++.+     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+....   +     . +
T Consensus       118 v~~vd~~-----d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~---~-----~-p  183 (366)
T PRK08247        118 FVYVNTA-----SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL---Q-----R-P  183 (366)
T ss_pred             EEEECCC-----CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc---c-----C-c
Confidence            9998863     89999999999999999999999999999999999999999999999999853322   1     1 1


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      .   ..|+|+++.|.+|++.++.+  .|++..+++++........ ...          |....  ...+|.+++  +.+
T Consensus       184 ~---~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~-~~~----------g~~~s--~~~a~l~~~--~l~  245 (366)
T PRK08247        184 L---EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQ-NAA----------GAVLS--PFDSWLLIR--GMK  245 (366)
T ss_pred             h---hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHH-Hhc----------CCCCC--hHHHHHHHh--ccC
Confidence            2   24789999999999665544  5666655444432211111 111          11111  124566654  445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+..+.++..++++.+.+.|+++|++..
T Consensus       246 tl~~r~~~~~~~a~~l~~~L~~~p~v~~  273 (366)
T PRK08247        246 TLALRMRQHEENAKAIAAFLNEQPGVTD  273 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCeeE
Confidence            6677788889999999999999998764

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.78  E-value=2.5e-17  Score=169.07  Aligned_cols=244  Identities=12%  Similarity=0.069  Sum_probs=165.3

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCcc-ceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC---CC---cCcH
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQV-CGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV---SA---HSAY  239 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v-~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~---~~---h~s~  239 (438)
                      ....++|+.+++..+++|+...+.    + +.+-+.+|+.||..++.++..     +|   |+|+..+   ..   |.+.
T Consensus        76 ~~~d~lE~~~~~~~~~~f~~~~~~----~~~nv~~~SG~~AN~av~~aL~~-----pg---D~Il~~d~~~gGhl~H~~~  143 (475)
T PLN03226         76 EYIDQIETLCQKRALEAFRLDPEK----WGVNVQPLSGSPANFAVYTALLQ-----PH---DRIMGLDLPHGGHLSHGYQ  143 (475)
T ss_pred             hhHHHHHHHHHHHHHHHhCCCcce----eEEecCcCchHHHHHHHHHHhCC-----CC---CEEEECCCCcCcchhhhhh
Confidence            356788888889999999998765    2 112248899999999999863     77   8998744   23   3333


Q ss_pred             HHHHhhcCcE--EE--EeeCC-CCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675          240 DKAAQYFNIK--LW--RVPVD-KEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       240 ~~a~~~~Gi~--v~--~v~~~-~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g  313 (438)
                      ...++.-+..  +.  ..+.+ +++.+|+++|++++.+ ++++|++..  +.+|...|+++|+++|+++|++++||++++
T Consensus       144 ~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~~--S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~  221 (475)
T PLN03226        144 TDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAGA--SAYPRDWDYARMRKIADKVGALLMCDMAHI  221 (475)
T ss_pred             hcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEec--CcCCCccCHHHHHHHHHHcCCEEEEEchhh
Confidence            3332222222  22  33445 4789999999999874 677665533  347889999999999999999999999988


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc---ccc--CCCccCCCCccCC
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV---TEW--SGGLYVSPTVAGS  388 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~---~~~--~g~~~~~~~~~gs  388 (438)
                      .++++-   -+.+. ++    .++|++++++|||+.||.| |+++++++ .........   .++  .-.....+...|+
T Consensus       222 ~Gli~~---~~~~~-p~----~~~Div~~t~hK~L~GP~G-g~I~~~~~-~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~  291 (475)
T PLN03226        222 SGLVAA---QEAAS-PF----EYCDVVTTTTHKSLRGPRG-GMIFFRKG-PKPPKGQGEGAVYDYEDKINFAVFPGLQGG  291 (475)
T ss_pred             hCcccC---CCCCC-CC----CCCeEEEecCcccccCCCc-eEEEEchh-hcccccCCCccHHHHHHHhccccCCccCCC
Confidence            776641   11111 22    3699999999999889998 88888654 221100000   000  0000011123344


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+-..++++.++++.+-..+++++.++..+++++|++.|.+ .|+++
T Consensus       292 p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~l  337 (475)
T PLN03226        292 PHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KGYKL  337 (475)
T ss_pred             chHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCEE
Confidence            44455788889998887778888999999999999999988 47664

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.78  E-value=8.2e-17  Score=162.16  Aligned_cols=243  Identities=18%  Similarity=0.184  Sum_probs=167.5

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      .|....+..++.+.+.+++.+.+|.+.+. .+++  ++|+|+++++..++.++.     .+|   ++|+++.++|+.+..
T Consensus        62 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-~~~v--i~t~G~~~~l~~~~~~~~-----~~g---d~vlv~~P~y~~~~~  130 (383)
T TIGR03540        62 RYPSYEGMLAYRQAVADWYKRRFGVELDP-ETEV--LSLIGSKEGIAHIPLAFV-----NPG---DIVLVPDPGYPVYRI  130 (383)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhCCCCCC-CCeE--EECCCcHHHHHHHHHHhC-----CCC---CEEEEeCCCCcchHH
Confidence            34445566778888888888877764221 0025  788999999999988875     367   899999999999999


Q ss_pred             HHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchh
Q 013675          242 AAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      +++..|++++.+|+++  ++.+|++++++++.+++++|++++|+||||.+.+   +++|.++|++||+++++|++|+.+.
T Consensus       131 ~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~  210 (383)
T TIGR03540       131 GTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT  210 (383)
T ss_pred             HHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence            9999999999999974  4668999999999889999999999999999988   6889999999999999999997554


Q ss_pred             hhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          317 LPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       317 ~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      ..     +...+++ ... .....++..++.|. ++.+|  +|+++. ++++.+........+..+          -+..
T Consensus       211 ~~-----~~~~~~~~~~~~~~~~~i~~~SfSK~-~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~----------~~~~  273 (383)
T TIGR03540       211 FD-----GYKAPSFLEVDGAKDVGIEFHSLSKT-YNMTGWRIGMAVG-NADLIAGLGKVKTNVDSG----------VFQA  273 (383)
T ss_pred             cC-----CCCCcCcccCCCcccCEEEEEecccc-cCCccceeeEEeC-CHHHHHHHHHHHHhcccC----------CChH
Confidence            21     1101111 111 11234666788898 55555  898765 444443221111111000          0111


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ...++..++. -+.+..++..+...+.++.+.+.|++. ++.
T Consensus       274 ~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~  313 (383)
T TIGR03540       274 IQYAAIAALN-GPQDVVKEIRKIYQRRRDLLLEALKKI-GID  313 (383)
T ss_pred             HHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence            1122223332 234556777777888899999999876 554

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.78  E-value=2.8e-17  Score=167.10  Aligned_cols=227  Identities=19%  Similarity=0.201  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIK  249 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~  249 (438)
                      .++.+.++++.|.+.      .  +++++|++|+..++.++.     ++|   ++|+++...|.+    +...+..+|++
T Consensus        60 ~~le~~lA~l~g~~~------~--v~~~sG~~Ai~~al~~l~-----~~G---d~Vl~~~~~y~~t~~~~~~~~~~~G~~  123 (418)
T TIGR01326        60 DVLEQRIAALEGGVA------A--LAVASGQAAITYAILNLA-----QAG---DNIVSSSYLYGGTYNLFKHTLKRLGIE  123 (418)
T ss_pred             HHHHHHHHHHhCCCe------E--EEEccHHHHHHHHHHHHh-----CCC---CEEEEECCCcHHHHHHHHHHHHHcCcE
Confidence            455567999998742      2  899999999999998875     367   899999988755    34556778999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      ++.++.+     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+..         ..+
T Consensus       124 v~~v~~~-----d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~---------~~~  189 (418)
T TIGR01326       124 VRFVDPD-----DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL---------CRP  189 (418)
T ss_pred             EEEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhc---------CCc
Confidence            9999853     89999999999999999999999999999999999999999999999999874321         112


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccc--hhcc----cccCCCccCC---------------CCcc
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQ--FVAV----TEWSGGLYVS---------------PTVA  386 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~--~~~~----~~~~g~~~~~---------------~~~~  386 (438)
                      +   ..|+|+++.|++|++ ++.|  .|+++++.+......  +...    +.........               ....
T Consensus       190 l---~~g~Divv~S~sK~l-~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~  265 (418)
T TIGR01326       190 I---DHGADIVVHSATKYI-GGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDL  265 (418)
T ss_pred             h---hcCCeEEEECccccc-cCCccceEEEEEecccccccccccccccCCCCccccchhhhhhchhhHHHHHHHHHHHhc
Confidence            2   347899999999995 4444  677677543322110  0000    0000000000               0001


Q ss_pred             CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      |....  ...+|..+  .|.+.+..+.++..+++..+++.|.+.|++..+.|
T Consensus       266 G~~~~--p~~a~~~~--~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~y  313 (418)
T TIGR01326       266 GAALS--PFNAFLLL--QGLETLSLRMERHVENALKVAEFLEAHPKVAWVNY  313 (418)
T ss_pred             CCCCC--HHHHHHHH--CCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            21221  12555554  45567777788888899999999999999876654

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.78  E-value=1.5e-17  Score=165.86  Aligned_cols=219  Identities=15%  Similarity=0.120  Sum_probs=156.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~  244 (438)
                      ..|...++|+    .++++.|.+.      +  +.++||++|+.+++..+      ++|   |+|+++...|......+.
T Consensus        52 ~~p~~~~le~----~lA~leg~~~------~--v~~~sG~aAi~~~l~~l------~~G---D~VI~~~~~yg~~~~~~~  110 (364)
T PRK07269         52 KNPTRAKLEE----TLAAIESADY------A--LATSSGMSAIVLAFSVF------PVG---SKVVAVRDLYGGSFRWFN  110 (364)
T ss_pred             CCccHHHHHH----HHHHHhCCCe------E--EEeCCHHHHHHHHHHHh------CCC---CEEEEecCCcCchHHHHH
Confidence            3455566665    5777877542      3  89999999999988532      377   999999887765433322


Q ss_pred             hc----CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          245 YF----NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       245 ~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      ..    ++++       ++..|+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++....   
T Consensus       111 ~~~~~~~~~~-------~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~---  180 (364)
T PRK07269        111 QQEKEGRFHF-------TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY---  180 (364)
T ss_pred             HHHhcCcEEE-------EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc---
Confidence            21    2221       234589999999999999999999999999999999999999999999999999754321   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~  398 (438)
                               ......|+|+++.|.+|++.++..  .|+++.+++++.+...... ..          .|......  .+|
T Consensus       181 ---------~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~-~~----------~G~~~s~~--~a~  238 (364)
T PRK07269        181 ---------QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL-NT----------TGAVLSPF--DSY  238 (364)
T ss_pred             ---------CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHH-HH----------hCCCCCHH--HHH
Confidence                     111235899999999999666554  5777777665443222111 01          12222222  556


Q ss_pred             HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      ..+  .|.+.+..+.++..+++.++.+.|++.|+++-++|
T Consensus       239 l~~--~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~y  276 (364)
T PRK07269        239 LLM--RGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLY  276 (364)
T ss_pred             HHH--cCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeC
Confidence            555  45567899999999999999999999998765544

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.77  E-value=1.5e-17  Score=166.40  Aligned_cols=217  Identities=17%  Similarity=0.098  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~Gi  248 (438)
                      .+.+.+.++.+-+.+..        +++++|++|+..++.++.     ++|   |+|+++.+.|.++..    .++.+|+
T Consensus        66 ~~~Le~~la~le~~~~~--------v~~sSG~aAi~~~l~all-----~~G---D~Vlv~~~~Y~~~~~l~~~~l~~~Gi  129 (395)
T PRK05967         66 TDALCKAIDALEGSAGT--------ILVPSGLAAVTVPFLGFL-----SPG---DHALIVDSVYYPTRHFCDTMLKRLGV  129 (395)
T ss_pred             HHHHHHHHHHHhCCCCE--------EEECcHHHHHHHHHHHhc-----CCC---CEEEEccCCcHHHHHHHHHHHHhcCe
Confidence            33445567777765421        677779999999998875     378   999999999988764    5677899


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +++.++.+     +.++++++++++|++|++++|+||++.+.|+++|+++|+++|++++||++++..+.           
T Consensus       130 ~v~~vd~~-----~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~-----------  193 (395)
T PRK05967        130 EVEYYDPE-----IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY-----------  193 (395)
T ss_pred             EEEEeCCC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-----------
Confidence            99998653     45889999999999999999999999999999999999999999999999865322           


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                       ++....|+|++..|..||..|-.+  .|++. .+++...........           .|.-..  ...+|..+  .|.
T Consensus       194 -~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~-~~~~~~~~l~~~~~~-----------~G~~~~--p~da~l~~--rgl  256 (395)
T PRK05967        194 -FRPLDFGVDISIHAATKYPSGHSDILLGTVS-ANEKCWPQLLEAHGT-----------LGLCAG--PDDTYQIL--RGL  256 (395)
T ss_pred             -cChhHcCCCEEEEecccccCCCCCeeEEEEE-cCHHHHHHHHHHHHH-----------cCCCCC--HHHHHHHH--cCc
Confidence             334456999999999999433221  56544 333322111111100           121111  12566555  577


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +-+.-+.++..++|..+++.|++.|.++-+.|
T Consensus       257 ~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~y  288 (395)
T PRK05967        257 RTMGIRLEHHRKSALEIARWLEGRPDVARVLH  288 (395)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCCcEEEC
Confidence            88899999999999999999999998865544

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.77  E-value=1.3e-16  Score=160.71  Aligned_cols=238  Identities=17%  Similarity=0.179  Sum_probs=164.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      |....+..++.+.+.+++.+.+|.+  +++   ++  ++|+|+++++..++.++.+     +|   |+|+++.++|+.+.
T Consensus        65 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~i--i~t~G~~~~i~~~~~~~~~-----~g---d~Vl~~~P~y~~~~  131 (385)
T PRK09276         65 YPSYEGMLEFRKAVADWYKRRFGVELDPET---EV--ISLIGSKEGIAHIPLAFVN-----PG---DVVLVPDPGYPVYK  131 (385)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cE--EEccCcHHHHHHHHHHhCC-----CC---CEEEEcCCCCcChH
Confidence            4334456677888888888777753  332   15  7889999999999888763     67   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      .+++..|++++.+|+++  ++.+|++++++++.+++++|++++|+||||.+.+   +++|+++|++||+++++|.+|+.+
T Consensus       132 ~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~  211 (385)
T PRK09276        132 IGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEI  211 (385)
T ss_pred             HHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhhe
Confidence            99999999999999974  4678999999999889999999999999999987   578889999999999999999765


Q ss_pred             hhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          316 VLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      ...     +...+++. . ...+..++..++.|. ++.+|  +|+++.. +++..........+..+          -+ 
T Consensus       212 ~~~-----~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~~GlRiG~~i~~-~~l~~~~~~~~~~~~~~----------~~-  273 (385)
T PRK09276        212 AYD-----GYKPPSFLEVPGAKDVGIEFHSLSKT-YNMTGWRIGFAVGN-ADLIAGLGKVKSNVDSG----------VF-  273 (385)
T ss_pred             ecC-----CCCCCChhccCCCcCCEEEEecchhh-cCCcchhheeeeCC-HHHHHHHHHHHhhccCC----------CC-
Confidence            431     11011111 1 112345667788898 55555  8987654 44433221111100000          01 


Q ss_pred             chHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          392 GLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       392 ~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                        .....++...+  ....+++..++..+.++++.+.|+++ +++
T Consensus       274 --~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~  315 (385)
T PRK09276        274 --QAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-GLE  315 (385)
T ss_pred             --HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence              11222222223  24556677777788889999999876 443

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.77  E-value=3.1e-17  Score=163.32  Aligned_cols=224  Identities=16%  Similarity=0.099  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.++++++.++++    +  ++|+|+++++.+++.++.     .+|   ++|+++.+.|..+..+++..|++++.+
T Consensus        62 ~~lr~~ia~~~~~~~~~----i--~it~G~~~~l~~~~~~l~-----~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v  127 (351)
T PRK14807         62 EKLREELARYCSVVPTN----I--FVGNGSDEIIHLIMLAFI-----NKG---DVVIYPHPSFAMYSVYSKIAGAVEIPV  127 (351)
T ss_pred             HHHHHHHHHHhCCCccc----E--EEecCHHHHHHHHHHHhc-----CCC---CEEEEeCCChHHHHHHHHHcCCeEEEe
Confidence            35566788888988776    6  899999999999888865     377   899999999999999999999999999


Q ss_pred             eCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          254 PVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      ++++++.+|++++++++++ +++++++++|+||||.+.+.+++.++|++++.++++|++|+.+.-       ...++. .
T Consensus       128 ~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~-------~~~~~~-~  199 (351)
T PRK14807        128 KLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYG-------NTIVDV-I  199 (351)
T ss_pred             ecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcc-------cchHHH-h
Confidence            9988889999999999975 899999999999999999999999999998899999999975421       001111 0


Q ss_pred             CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHH
Q 013675          333 SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLE  411 (438)
Q Consensus       333 ~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~  411 (438)
                      ....-.++..|++|... .+..+|+++. ++++..........|.             ..  ..++.++...+....+++
T Consensus       200 ~~~~~vi~~~S~SK~~~~~GlRiG~~v~-~~~~~~~~~~~~~~~~-------------~~--~~~q~~~~~~l~~~~~~~  263 (351)
T PRK14807        200 NEFENLIVLRTLSKAFGLAGLRVGYAVA-NENILKYLNLVKSPYN-------------IN--SLSQVIALKVLRTGVLKE  263 (351)
T ss_pred             hhCCCEEEEecchHhcccchhceeeeec-CHHHHHHHHHccCCCC-------------cC--HHHHHHHHHHHhHHHHHH
Confidence            11123577788899953 4456898765 3444332111111110             01  124444444454445677


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCccc
Q 013675          412 NTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       412 ~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++..+.++++.+.|++++|+++
T Consensus       264 ~~~~~~~~r~~l~~~l~~~~g~~~  287 (351)
T PRK14807        264 RVNYILNERERLIKELSKIPGIKV  287 (351)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcEE
Confidence            777788888889999988777653

>PRK09082 methionine aminotransferase; Validated

Probab=99.77  E-value=3.6e-17  Score=164.95  Aligned_cols=241  Identities=18%  Similarity=0.182  Sum_probs=168.8

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      .|...++..++++++.+++.+++|.+.+. ..++  ++|+|+++|+.+++.++.     .+|   |+|+++.+.|.++..
T Consensus        62 ~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~-~~~i--~~t~G~~~al~~~~~~~~-----~~g---d~Vli~~p~y~~~~~  130 (386)
T PRK09082         62 QYPPMTGVAALREAIAAKTARLYGRQYDA-DSEI--TVTAGATEALFAAILALV-----RPG---DEVIVFDPSYDSYAP  130 (386)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhCCCCCC-CCcE--EEeCCHHHHHHHHHHHHc-----CCC---CEEEEeCCCchhhHH
Confidence            34445678889999999999998875321 0015  899999999999998875     367   899999999999999


Q ss_pred             HHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          242 AAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      +++..|.+++.+|+++ ++.+|+++++++++++++++++++|+||||.+   +++++|.++|++||+++++|.+|+.+..
T Consensus       131 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~  210 (386)
T PRK09082        131 AIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVF  210 (386)
T ss_pred             HHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhcc
Confidence            9999999999999974 78999999999999999999999999999987   5688999999999999999999976543


Q ss_pred             hhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCCCCCch
Q 013675          318 PFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       318 pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      .  ...+  .+.... ......++..++.|.+. .+..+|+++.. +++........  ..|.             ..  
T Consensus       211 ~--~~~~--~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~-~~l~~~~~~~~~~~~~~-------------~~--  270 (386)
T PRK09082        211 D--GAGH--ASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP-AALSAEFRKVHQYNTFT-------------VN--  270 (386)
T ss_pred             C--CCCC--CChhhCcCccCcEEEEeechhhccchhhhhhhhhCC-HHHHHHHHHHHhhhcCC-------------CC--
Confidence            1  1000  000111 11234577778899842 33458987764 34332211110  1111             00  


Q ss_pred             HHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          394 IAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       394 ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ...+.++...+  ..+..++..+...++.+++.+.|++. +++
T Consensus       271 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~  312 (386)
T PRK09082        271 TPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS-RFK  312 (386)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence            11222222222  34556666777788888888888764 444

>PRK07550 hypothetical protein; Provisional

Probab=99.77  E-value=9.4e-17  Score=161.89  Aligned_cols=241  Identities=19%  Similarity=0.173  Sum_probs=166.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      .|...++..++++.+.+++.+..|.+  +++    +  ++|+|+++++.+++.++.     ++|   ++|+++.+.|..+
T Consensus        62 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---d~Vlv~~p~y~~~  127 (386)
T PRK07550         62 LYGPVEGLPELREAYAAHYSRLYGAAISPEQ----V--HITSGCNQAFWAAMVTLA-----GAG---DEVILPLPWYFNH  127 (386)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCcce----E--EEecCcHHHHHHHHHHhc-----CCC---CEEEEcCCCCcch
Confidence            34455678888888888988887753  443    6  899999999999888875     367   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ...++..|++++.+++++  ++.+|+++++++++++++++++++|+||||.+.+   +++|+++|+++|+++++|++|+.
T Consensus       128 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~  207 (386)
T PRK07550        128 KMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRD  207 (386)
T ss_pred             HHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchh
Confidence            999999999999999974  5678999999999999999999999999999876   78999999999999999999986


Q ss_pred             hhhhhhhhcCCCCCCCccCCCC-ccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          315 FVLPFAKKLGYPIPPFDFSVQG-VTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~~g-vdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      +..    ..+...+.+.....+ -.++..+++|... ....+|+++..++ +..........+.        ...+..  
T Consensus       208 ~~~----~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~-~~~~~~~~~~~~~--------~~~s~~--  272 (386)
T PRK07550        208 FDS----GGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPA-RIAEIEKFMDTVA--------ICAPRI--  272 (386)
T ss_pred             hcc----CCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHH-HHHHHHHHHhhcc--------cCCCcH--
Confidence            531    011101111111112 2456778999843 3456898877543 3222111111000        001111  


Q ss_pred             hHHHHHHHHHHHc--HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          393 LIAGAWAALMSLG--QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       393 ~ia~~~aal~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                         +++++...+.  .+..++..++..+.++++.+.|++++++.
T Consensus       273 ---~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  313 (386)
T PRK07550        273 ---GQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWE  313 (386)
T ss_pred             ---HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence               2222222222  33445566677788888888888765543

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.77  E-value=3e-16  Score=159.34  Aligned_cols=240  Identities=14%  Similarity=0.157  Sum_probs=168.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      +|....+..++.+.+.+++.+.+|.  ++++    +  ++|+|+++++.+++.++.+     +|   ++|+++.++|+.+
T Consensus        69 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~----I--~it~G~~~al~~~~~~l~~-----~g---d~v~v~~P~y~~~  134 (409)
T PLN00143         69 SYAPTGGILPARRAIADYLSNDLPYQLSPDD----V--YLTLGCKHAAEIIIKVLAR-----PE---ANILLPRPGFPDV  134 (409)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCHhh----E--EEecChHHHHHHHHHHHcC-----CC---CEEEEcCCCCcCH
Confidence            3545566777888877787776654  4444    6  8999999999999998763     77   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ...++..|++++.+++++  ++.+|+++|+++++++++.+++++|+||||.+.+   +++|.++|++|++++++|++|..
T Consensus       135 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~  214 (409)
T PLN00143        135 ETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGH  214 (409)
T ss_pred             HHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence            999999999999999853  5789999999999889999999999999999987   67888899999999999999986


Q ss_pred             hhhhhhhhcCCCCCCCc-cCCCCccEEEeCCCCC-CCCCCCcEEEEEecc-ccccc-----chhcccccCCCccCCCCcc
Q 013675          315 FVLPFAKKLGYPIPPFD-FSVQGVTSISVDVHKY-GLAPKGTSVVLYRNR-EIRKH-----QFVAVTEWSGGLYVSPTVA  386 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~-~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~-~~~~~-----~~~~~~~~~g~~~~~~~~~  386 (438)
                      +..   +  +...+++. +....-.++..++.|. +..+..+|+++..++ .+.+.     .+.....        ... 
T Consensus       215 l~~---~--~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~--------~~~-  280 (409)
T PLN00143        215 IVF---G--SKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALN--------PAP-  280 (409)
T ss_pred             ccc---C--CCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHh--------ccC-
Confidence            543   1  10011111 1111124677788999 566677999887543 22211     0100000        000 


Q ss_pred             CCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          387 GSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      .. + ..  .+.++...+   ....+++..++..+..+++.+.|+++++.
T Consensus       281 ~~-~-~~--~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  326 (409)
T PLN00143        281 FP-P-TF--IQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCI  326 (409)
T ss_pred             CC-C-ch--HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            00 0 11  222333223   24567788888888888899998877543

>PLN02242 methionine gamma-lyase

Probab=99.77  E-value=1.6e-17  Score=168.30  Aligned_cols=216  Identities=17%  Similarity=0.102  Sum_probs=155.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH--
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA--  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~--  243 (438)
                      .|...++|    +.+++++|.+..        ++++||++|+..++.++..     +|   |+|+++.+.|......+  
T Consensus        75 ~Pt~~~LE----~~lA~l~g~~~~--------l~~~sG~~Ai~~al~al~~-----~G---D~Vl~~~~~Y~~~~~~~~~  134 (418)
T PLN02242         75 NPTVLNLG----RQMAALEGTEAA--------YCTASGMSAISSVLLQLCS-----SG---GHVVASNTLYGGTHALLAH  134 (418)
T ss_pred             ChhHHHHH----HHHHHHhCCCeE--------EEEccHHHHHHHHHHHHhC-----CC---CEEEEcCCcHHHHHHHHHH
Confidence            45445444    468999988642        7899999999999998763     77   99999999887776654  


Q ss_pred             ---hhcCcEEEEeeCCCCCccCHHHHHHhhccC-cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          244 ---QYFNIKLWRVPVDKEFRADVKAIKKYINRN-TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       244 ---~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~-t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                         +..|++++.++.+     |+++++++|+++ |++|++++|+||+|.+.|+++|+++|+++|+++++|.+|+.+..  
T Consensus       135 ~~~~~~G~~~~~~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~--  207 (418)
T PLN02242        135 FLPRKCNITTTFVDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL--  207 (418)
T ss_pred             hhhhccCceEEEcCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCC--
Confidence               3578888877654     899999999984 99999999999999999999999999999999999999853221  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                                 +....|+|+++.+++|++.++..  .|+++. ++++..........   .    ....|....    ..
T Consensus       208 -----------~~~~~g~divv~S~SK~l~g~g~~~gG~iv~-~~~li~~l~~~~~~---~----~~~~g~~~~----~~  264 (418)
T PLN02242        208 -----------SPARLGADVVVHSISKFISGGADIIAGAVCG-PAELVNSMMDLHHG---A----LMLLGPTMN----PK  264 (418)
T ss_pred             -----------CHHHcCCcEEEEeCccccCCCCCceEEEEEc-CHHHHHHHHHHhhh---h----hhccCCCCC----HH
Confidence                       12233689999999999544433  466554 44443321111100   0    001122222    23


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      .+++...+...+..+.++..++++++.+.|++++
T Consensus       265 ~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~  298 (418)
T PLN02242        265 VAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG  298 (418)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3333335556677788899999999999999883

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.77  E-value=1.1e-16  Score=162.68  Aligned_cols=240  Identities=15%  Similarity=0.107  Sum_probs=165.3

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhC--------CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLG--------NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV  233 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g--------~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~  233 (438)
                      .|....+..++.+.+.+++.+.++        .++++    +  ++|+|+++++.+++.++..     +|   ++|+++.
T Consensus        70 ~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~----i--~it~G~~~al~~~~~~~~~-----~g---d~vlv~~  135 (412)
T PTZ00433         70 GYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDN----V--VLCSGVSHAILMALTALCD-----EG---DNILVPA  135 (412)
T ss_pred             CCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhh----E--EEeCChHHHHHHHHHHhcC-----CC---CEEEEcc
Confidence            344445667777777777776543        44554    6  8999999999999998763     67   8999999


Q ss_pred             CCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEE
Q 013675          234 SAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHV  308 (438)
Q Consensus       234 ~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhV  308 (438)
                      ++|+.+...++..|++++.+|+++  ++.+|++++++++++++++|++++|+||||.+.+   +++|.++|+++|+++++
T Consensus       136 P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~  215 (412)
T PTZ00433        136 PGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLIS  215 (412)
T ss_pred             CCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence            999999999999999999999864  6789999999999989999999999999998765   77889999999999999


Q ss_pred             eccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecc-----cccccchhccc-ccCCCccC
Q 013675          309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNR-----EIRKHQFVAVT-EWSGGLYV  381 (438)
Q Consensus       309 D~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~-----~~~~~~~~~~~-~~~g~~~~  381 (438)
                      |++|..+...  ...-..+..++.  ..-.++..++.|.+ ..+..+|+++..++     ++......... .|.     
T Consensus       216 De~y~~~~~~--~~~~~~~~~~~~--~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~-----  286 (412)
T PTZ00433        216 DEIYAGMVFN--GATFTSVADFDT--TVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCG-----  286 (412)
T ss_pred             eccccccccC--CCCccchhhccC--CCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCC-----
Confidence            9999865431  000000101111  11135677889984 56677999887432     12211101000 010     


Q ss_pred             CCCccCCCCCchHHHHHHHHHHH--c-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSL--G-QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~--g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                              ..  ...+.++...+  + ...+++..++..+..+.+.+.|++..++.
T Consensus       287 --------~~--~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~  332 (412)
T PTZ00433        287 --------PC--SVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLS  332 (412)
T ss_pred             --------CC--hHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence                    00  11222222222  1 34566677788888888999998765554

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.77  E-value=6.3e-17  Score=167.68  Aligned_cols=189  Identities=15%  Similarity=0.162  Sum_probs=143.5

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ...|....+..++.+.+.+++.+..|.+  +++    |  ++|+|+++++.++++++..    .+|   |+|+++.++|+
T Consensus       108 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~----I--~it~Ga~~al~~~~~~l~~----~~g---D~Vlv~~P~y~  174 (481)
T PTZ00377        108 TGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSD----I--FLTDGASSGIKLLLQLLIG----DPS---DGVMIPIPQYP  174 (481)
T ss_pred             ccCcCcccCCHHHHHHHHHHHHHhcCCCCChhh----E--EEcCCHHHHHHHHHHHhcc----CCC---CEEEECCCCch
Confidence            3456667788888888888888776654  444    7  8999999999999998751    267   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      .+...++..|.+++.+|+++  ++.+|+++|++++++      +|+++++++|+||||.+.+   +++|+++|++||+++
T Consensus       175 ~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~i  254 (481)
T PTZ00377        175 LYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVL  254 (481)
T ss_pred             hHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEE
Confidence            99999999999999999975  468999999999975      7899999999999999988   789999999999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCC-----ccCCC---Cc-cEEEeCCCCCCC--CCCCcEEEEEe--ccccc
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPF-----DFSVQ---GV-TSISVDVHKYGL--APKGTSVVLYR--NREIR  365 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~-----~~~~~---gv-dsis~s~hK~~~--~p~g~g~l~~r--~~~~~  365 (438)
                      ++|++|+.+...  .  +.+.+++     +....   +. .++..+..|.++  ++..+|+++..  ++++.
T Consensus       255 I~De~Y~~l~~~--~--~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li  322 (481)
T PTZ00377        255 MADEVYQENIYD--G--EKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVR  322 (481)
T ss_pred             EEehhhHhhccC--C--CCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHH
Confidence            999999765430  0  0000011     00000   11 245568899644  46678998762  44443

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.77  E-value=1.1e-16  Score=161.76  Aligned_cols=235  Identities=13%  Similarity=0.188  Sum_probs=159.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      |....+..++++.+.+++...+|.+   +++    +  ++|+|+++++.+++.++.     .+|   ++|+++.+.|..+
T Consensus        63 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~----i--~it~G~~~al~~~~~~~~-----~~g---d~vl~~~p~y~~~  128 (391)
T PRK07309         63 YTGMAGLLELRQAAADFVKEKYNLDYAPENE----I--LVTIGATEALSASLTAIL-----EPG---DKVLLPAPAYPGY  128 (391)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCc----E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEeCCCCcch
Confidence            4344566778888888888777763   233    6  899999999999988865     367   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675          240 DKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~  312 (438)
                      ...++..|++++.+|+++ ++.+|++++++++++   +++++++++|+||||.+.+   +++|+++|++||+++++|++|
T Consensus       129 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y  208 (391)
T PRK07309        129 EPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVY  208 (391)
T ss_pred             HHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccc
Confidence            999999999999999876 568999999999864   6899999999999999865   889999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      +.+...     +...+++......-.++..|++|... ....+|+++.. +++....... ..|..          ....
T Consensus       209 ~~~~~~-----~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~-~~~~~~~~~~-~~~~~----------~~~~  271 (391)
T PRK07309        209 SELTYT-----GEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAP-AEFTAQLIKS-HQYLV----------TAAT  271 (391)
T ss_pred             cceeeC-----CCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeC-HHHHHHHHHH-Hhhcc----------cCCC
Confidence            865431     10011111011123477788999942 33448887765 3443322111 11110          0001


Q ss_pred             chHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          392 GLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       392 ~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..  .+.++...+  +........++..+.++++.+.|++.
T Consensus       272 ~~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (391)
T PRK07309        272 TM--AQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL  310 (391)
T ss_pred             hH--HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC
Confidence            11  222323223  22223344556667778888888775

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.77  E-value=2e-16  Score=160.43  Aligned_cols=246  Identities=16%  Similarity=0.177  Sum_probs=161.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      +...++..++++.+.+++....+.  ++++    +  ++|+|+|+|+.+++.++..     +|   ++|+++.++|+.+.
T Consensus        69 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~----i--i~t~G~t~al~~~~~~l~~-----~g---d~Vlv~~p~y~~~~  134 (403)
T TIGR01265        69 YAPSVGALAAREAVAEYLSSDLPGKLTADD----V--VLTSGCSQAIEICIEALAN-----PG---ANILVPRPGFPLYD  134 (403)
T ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCHHH----E--EEecChHHHHHHHHHHhCC-----CC---CEEEEeCCCchhHH
Confidence            333455555555544444433232  3333    6  8999999999999998762     67   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      ..+...|++++.+++++  ++.+|+++++++++++++++++++|+||||.+.+   +++|.++|+++|+++++|++|+.+
T Consensus       135 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~  214 (403)
T TIGR01265       135 TRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHM  214 (403)
T ss_pred             HHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence            99999999999998853  5789999999999999999999999999999976   889999999999999999999866


Q ss_pred             hhhhhhhcCCCCCCCccCCCCc-cEEEeCCCCC-CCCCCCcEEEEEecc-cccccchhc-ccccCCCccCCCCccCCCCC
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGV-TSISVDVHKY-GLAPKGTSVVLYRNR-EIRKHQFVA-VTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gv-dsis~s~hK~-~~~p~g~g~l~~r~~-~~~~~~~~~-~~~~~g~~~~~~~~~gsr~~  391 (438)
                      ...  .   .+.+++....... -+++.|+.|. +..+..+|+++..++ ......+.. ......     ... + .+.
T Consensus       215 ~~~--~---~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~-----~~~-~-~~~  282 (403)
T TIGR01265       215 VFG--D---APFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ-----RIL-G-PAT  282 (403)
T ss_pred             ccC--C---CCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhh-----hhc-C-CCh
Confidence            531  0   0001111001111 3566788998 445567999887643 211110000 000000     000 0 011


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ....++-.++......-+++..+++.+.++++.+.|+++++++
T Consensus       283 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  325 (403)
T TIGR01265       283 IVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLV  325 (403)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            1111222333222234566677788888899999998877765

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PLN02231 alanine transaminase

Probab=99.77  E-value=1.5e-16  Score=165.66  Aligned_cols=245  Identities=14%  Similarity=0.177  Sum_probs=169.8

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ...|..+.|..++.+.+.+++.+..|.+  +++    |  ++|+|+++++.++++++..    .+|   |.|+++.+.|+
T Consensus       161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~----I--~iT~Ga~~ai~~~~~~l~~----~~g---d~Vli~~P~Y~  227 (534)
T PLN02231        161 TGAYSHSQGIKGLRDAIAAGIEARDGFPADPND----I--FLTDGASPAVHMMMQLLIR----SEK---DGILCPIPQYP  227 (534)
T ss_pred             ccCcCCCCCcHHHHHHHHHHHHhccCCCCCccc----E--EEeCCHHHHHHHHHHHhcc----CCC---CEEEEeCCCCh
Confidence            3557778888999999999988876754  444    7  8999999999999998752    256   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      .+..++..+|.+++.+++++  ++.+|+++|++++++      +++++++++|+||||.+.+   +++|.++|++||+++
T Consensus       228 ~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~l  307 (534)
T PLN02231        228 LYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVL  307 (534)
T ss_pred             hHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999985  479999999999975      6899999999999999976   678899999999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCCc-c------CCCCccEE-EeCCCCCCC--CCCCcEEEEEe--cccccccchhcccc
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPFD-F------SVQGVTSI-SVDVHKYGL--APKGTSVVLYR--NREIRKHQFVAVTE  374 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~~-~------~~~gvdsi-s~s~hK~~~--~p~g~g~l~~r--~~~~~~~~~~~~~~  374 (438)
                      ++|++|..+...  .  +...+++. .      ....+..+ ..|..|.++  ++..+|++...  ++++.+....... 
T Consensus       308 I~DEvY~~l~y~--~--~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~-  382 (534)
T PLN02231        308 LADEVYQENVYV--P--DKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS-  382 (534)
T ss_pred             EEEccchhcccC--C--CCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh-
Confidence            999999865431  0  00000110 0      01122234 448899533  56779998763  4444433221110 


Q ss_pred             cCCCccCCCCccCCCCCchHHHHHHHHHHH-----cHHHH-------HHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSL-----GQEGY-------LENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-----g~~g~-------~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                              ...+.+     ..+..++...+     |...|       +++.+...+.++.+.+.|++++|+++
T Consensus       383 --------~~~~s~-----~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~  442 (534)
T PLN02231        383 --------VNLCSN-----ISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTC  442 (534)
T ss_pred             --------hhcCCC-----hHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence                    001101     11222222222     11222       23456778888999999998888764

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.76  E-value=3.5e-17  Score=166.26  Aligned_cols=226  Identities=18%  Similarity=0.159  Sum_probs=157.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh----hcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ----YFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~----~~Gi~v  250 (438)
                      ++.+.++++.|.+.      .  +++++|++|+..++.++..     +|   ++|+++...|......+.    ..|+++
T Consensus        62 ~Le~~lA~l~g~~~------~--l~~ssG~~Ai~~al~al~~-----~G---d~Vl~~~~~Y~~t~~~~~~~l~~~gi~v  125 (425)
T PRK06084         62 VLEQRVAALEGGVG------A--LAVASGMAAITYAIQTIAE-----AG---DNIVSVAKLYGGTYNLLAHTLPRIGIET  125 (425)
T ss_pred             HHHHHHHHHhCCCc------e--eEehhHHHHHHHHHHHHhC-----CC---CEEEEeCCCcchHHHHHHHhcccceeEE
Confidence            44456888888643      2  7889999999999998763     67   899999988875444433    357777


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      ..++.     .|+++++++++++|++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+..            .
T Consensus       126 ~~~d~-----~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~------------~  188 (425)
T PRK06084        126 RFAAH-----DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL------------C  188 (425)
T ss_pred             EEECC-----CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc------------C
Confidence            77764     389999999999999999999999999999999999999999999999999874322            1


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC-cEEEEEeccccc-----ccc--hh-cccccCCCccCCCC----------------c
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIR-----KHQ--FV-AVTEWSGGLYVSPT----------------V  385 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~-----~~~--~~-~~~~~~g~~~~~~~----------------~  385 (438)
                      +....|+|+++.|++||+.++.. .|.+++.+....     ...  +. ..+.|.+ .+....                .
T Consensus       189 ~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~  267 (425)
T PRK06084        189 RPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHG-VTYTEAFGPAAFIGRCRVVPLRN  267 (425)
T ss_pred             ChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCccccc-chhhhhcchHHHHHHHHHHHHHh
Confidence            11235799999999999655432 343444322210     010  00 0111111 100000                0


Q ss_pred             cCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          386 AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       386 ~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .|.+....  .+|..+  .|.+.+..+.++..+++..+++.|+++|+++-+.|
T Consensus       268 ~g~~l~~~--~a~l~l--rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~y  316 (425)
T PRK06084        268 MGAALSPF--NAFLIL--QGLETLALRMERHTENALKVARYLQQHPQVAWVKY  316 (425)
T ss_pred             cCCCCCHH--HHHHHH--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            12222222  455444  56788999999999999999999999999875554

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.76  E-value=1.5e-17  Score=165.75  Aligned_cols=235  Identities=11%  Similarity=0.043  Sum_probs=171.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC--cHHH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS--AYDK  241 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~--s~~~  241 (438)
                      ..++.+.++.+++++.+++++|.+.+.   + +.+++++||.++..++..+..     +|   +++++.....+  .+.+
T Consensus        41 hr~~~f~~~~~~~~~~l~~l~~~~~~~---~-v~~~~gsgt~~~Ea~~~nl~~-----~g---~~~l~i~~G~fg~r~~~  108 (360)
T PRK05355         41 HRSKEFEAVAEEAEADLRELLNIPDNY---K-VLFLQGGASLQFAMVPMNLLG-----GG---KKADYVDTGSWSKKAIK  108 (360)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCc---E-EEEEcCCchHHHHHHHHhcCC-----CC---CeEEEEECCHHHHHHHH
Confidence            456777889999999999999985432   1 335567788888888877653     45   44443333322  2577


Q ss_pred             HHhhcCcEEEEeeCCC-CCccCHHHHHH-hhccCcEEEEEecCCCCCcccc-CHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          242 AAQYFNIKLWRVPVDK-EFRADVKAIKK-YINRNTVLIVGSAPGFPHGIID-PIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~-~~~~d~~~Le~-~I~~~t~~vv~~~~~~~tG~id-di~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      .++.+|.. +.++.++ .+..+..++++ ++++++++|.++|..|.||.+. |+++|      +|+.++||++++.+.. 
T Consensus       109 ~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~-  180 (360)
T PRK05355        109 EAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSR-  180 (360)
T ss_pred             HHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCc-
Confidence            88889975 6676664 56666666666 8888899999999999999997 77776      8999999999754433 


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc--ccccCCCccCCCCccCCCCCchHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA--VTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~--~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                                ++|...  .|++++++||+ ++|+|.|+++++++.+.+..-..  ..+|... .......|+.+-..+++
T Consensus       181 ----------~idv~~--~d~~~~ssqK~-lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~Tp~~~~i~a  246 (360)
T PRK05355        181 ----------PIDVSK--FGLIYAGAQKN-IGPAGLTIVIVREDLLGRALPSIPSMLDYKTH-ADNDSMYNTPPTFAIYL  246 (360)
T ss_pred             ----------cCCHHH--ccEEEEecccc-ccCCceEEEEECHHHHhhcccCCChHHHHHHH-HhcCCccCCCcHHHHHH
Confidence                      355544  46999999998 57999999999976553321100  0011100 01122347777788999


Q ss_pred             HHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          397 AWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       397 ~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      +.++++++-.+ |++++.++..++++++++.|++++.
T Consensus       247 L~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~  283 (360)
T PRK05355        247 AGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDF  283 (360)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999888 8999999999999999999999863

>PRK07683 aminotransferase A; Validated

Probab=99.76  E-value=2e-16  Score=159.51  Aligned_cols=239  Identities=15%  Similarity=0.188  Sum_probs=166.5

Q ss_pred             CCCCcccchhHHHHHHHHHHHHHHHhCC--CCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC
Q 013675          159 NPLHLDIFQSVARFEAEVIAMTAALLGN--KEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA  235 (438)
Q Consensus       159 n~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~  235 (438)
                      +...|...++..++++++.+++.+.+|.  +++ +    +  ++|+|+++|+.+++.++.     ++|   ++|+++.+.
T Consensus        57 ~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~----I--~~t~G~~~al~~~~~~l~-----~~g---d~Vl~~~p~  122 (387)
T PRK07683         57 NYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESE----I--IVTIGASEAIDIAFRTIL-----EPG---TEVILPAPI  122 (387)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----E--EEeCChHHHHHHHHHHhC-----CCC---CEEEEcCCC
Confidence            3344444566778888888888776665  444 4    6  899999999999988865     267   899999999


Q ss_pred             cCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecc
Q 013675          236 HSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       236 h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a  311 (438)
                      |+.+..+++..|++++.+|+++ ++.+|++++++.++++++++++++|+||||.+.+   +++|.++|+++|+++++|++
T Consensus       123 y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~  202 (387)
T PRK07683        123 YPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEI  202 (387)
T ss_pred             ccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecc
Confidence            9999999999999999999975 6778999999999989999999999999999865   78899999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          312 LGGFVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      |..+...  .. .  .+-..+ ...+-.++..+..|.+. .+..+|++.... ++.+..... ..|...          .
T Consensus       203 y~~~~~~--~~-~--~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~-~l~~~~~~~-~~~~~~----------~  265 (387)
T PRK07683        203 YSELVYE--QP-H--TSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPS-YLAKHILKV-HQYNVT----------C  265 (387)
T ss_pred             cccceeC--CC-c--CChhhccCCcCCeEEEeeccccccCccceeEEEEcCH-HHHHHHHHH-HHhccC----------C
Confidence            9865421  10 0  111111 11223577788899954 445589877654 333221111 111110          0


Q ss_pred             CCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          390 PGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       390 ~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ....  ++.++...+  |...+++..++..+.++++.+.|++.
T Consensus       266 ~~~~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  306 (387)
T PRK07683        266 ASSI--SQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM  306 (387)
T ss_pred             CChH--HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1111  222222222  44556667777788888888888765

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.76  E-value=1.9e-16  Score=161.17  Aligned_cols=168  Identities=21%  Similarity=0.286  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC------cHHHHHhhc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS------AYDKAAQYF  246 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~------s~~~a~~~~  246 (438)
                      ...+.+.+++++|++..        +++++|+.|+.+++.++      .+|   ++||++...|.      ++...++..
T Consensus       124 ~~~le~~lA~l~gae~a--------lvv~sg~aAi~l~l~~l------~~G---deVIvs~~e~v~~ggs~~i~~~~~~~  186 (454)
T TIGR00474       124 YSHVEGLLCELTGAEDA--------LVVNNNAAAVLLALNTL------AKG---KEVIVSRGELVEIGGSFRIPDVMEQS  186 (454)
T ss_pred             HHHHHHHHHHHhCCCcE--------EEECCHHHHHHHHHHHh------CCc---CEEEECCChhhhhcchhhHHHHHHHc
Confidence            45677889999999753        57788999998888553      266   89999988763      234566778


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCC--c--cccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH--G--IIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~t--G--~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      |++++.++.+  ...|+++++++|+++|++|+.++++|++  |  .+.|+++|+++||++|++++||++.|.+ .+.. .
T Consensus       187 G~~~~~v~~~--~~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l-~~~~-~  262 (454)
T TIGR00474       187 GAKLVEVGTT--NRTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSL-VDLS-R  262 (454)
T ss_pred             CCEEEEeCCC--CCCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCccc-ccch-h
Confidence            9999998764  3468999999999999999999999874  6  5789999999999999999999875432 1110 0


Q ss_pred             cCCC-CC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          323 LGYP-IP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       323 ~g~~-~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      .|.. .| ..+....|+|++++|+|||++||. .|+++.+++
T Consensus       263 ~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~  303 (454)
T TIGR00474       263 YGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKE  303 (454)
T ss_pred             ccCCCCcccccHhHcCCCEEEecCccccCCCe-EEEEEECHH
Confidence            1100 11 124556799999999999977774 788777754

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK04311 selenocysteine synthase; Provisional

Probab=99.76  E-value=1.4e-16  Score=162.43  Aligned_cols=224  Identities=18%  Similarity=0.216  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc------HHHHHhhcC
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA------YDKAAQYFN  247 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s------~~~a~~~~G  247 (438)
                      ..+.+.+++++|.+.      .  +++++|+.|+.+++.++.      +|   ++||++...|++      +...++..|
T Consensus       130 ~~~e~~lA~l~Gae~------a--~vv~sgtaAl~l~l~~l~------~G---deVIvs~~e~~~~ggs~~i~~~~~~~G  192 (464)
T PRK04311        130 RALAALLCALTGAED------A--LVVNNNAAAVLLALNALA------AG---KEVIVSRGELVEIGGAFRIPDVMRQAG  192 (464)
T ss_pred             HHHHHHHHHHhCCCe------E--EEECCHHHHHHHHHHHhC------CC---CEEEEcchhhhhcCcchhhHHHHHHCC
Confidence            467778999999863      2  788889999998886642      66   899999876652      334667789


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCC--Cc--cccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFP--HG--IIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~--tG--~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      ++++.++.+  ...++++++++|+++|++|+.++++|+  +|  ...|+++|+++||+||+++++|++.|.+ .++. ..
T Consensus       193 ~~l~~v~~~--~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l-~~~~-~~  268 (464)
T PRK04311        193 ARLVEVGTT--NRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSL-VDLS-QY  268 (464)
T ss_pred             cEEEEECCC--CCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCccc-ccch-hc
Confidence            999999764  346899999999999999999999997  34  5679999999999999999999975432 1111 11


Q ss_pred             CCC-CCC-CccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC-CCchHHHHHHH
Q 013675          324 GYP-IPP-FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR-PGGLIAGAWAA  400 (438)
Q Consensus       324 g~~-~p~-~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr-~~~~ia~~~aa  400 (438)
                      |.. .|. .+....|+|++++|+|||++|| .+|+++.+++ +.... ...          +....-| .+..++++.++
T Consensus       269 gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~~-li~~l-~~~----------~~~r~lr~dk~~l~~l~~~  335 (464)
T PRK04311        269 GLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGKKE-LIARL-KKH----------PLKRALRVDKLTLAALEAT  335 (464)
T ss_pred             cCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEcHH-HHHHH-hhc----------hhHHHHhcchHHHHHHHHH
Confidence            100 111 1233478999999999997777 4788777644 33211 000          0000011 23335566666


Q ss_pred             HHHHc--------H---HHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          401 LMSLG--------Q---EGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       401 l~~~g--------~---~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      +..+-        .   .-+....++..++|+.+.+.|++.+
T Consensus       336 l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~  377 (464)
T PRK04311        336 LRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAAL  377 (464)
T ss_pred             HHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhcc
Confidence            65331        1   1133344667778888888887754

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.76  E-value=4e-17  Score=163.11  Aligned_cols=217  Identities=16%  Similarity=0.113  Sum_probs=153.9

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH--
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA--  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~--  243 (438)
                      .|...++|+    .++++.  ..+     .  +++++|++|+..++.++.     ++|   |+|+++.+.|+.....+  
T Consensus        50 ~p~~~~Le~----~lA~l~--~~~-----~--v~~~sG~~Ai~~~l~all-----~~G---d~Vl~~~~~y~~~~~~~~~  108 (366)
T PRK07582         50 NPTWRALEA----ALGELE--GAE-----A--LVFPSGMAAITAVLRALL-----RPG---DTVVVPADGYYQVRALARE  108 (366)
T ss_pred             CccHHHHHH----HHHHHc--CCC-----E--EEECCHHHHHHHHHHHhc-----CCC---CEEEEeCCCcHhHHHHHHH
Confidence            455555555    577776  232     2  778888999998887764     377   89999999987766544  


Q ss_pred             --hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          244 --QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       244 --~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                        ..+|++++.++.++++.        .+.++|++|++++|+||+|.+.|+++|+++|+++|++++||++|+..      
T Consensus       109 ~l~~~G~~v~~v~~~~~~~--------~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~------  174 (366)
T PRK07582        109 YLAPLGVTVREAPTAGMAE--------AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATP------  174 (366)
T ss_pred             HHhcCeEEEEEECCCChHH--------HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCc------
Confidence              45799999998764321        33468999999999999999999999999999999999999997521      


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                       .+.  .+++   .|+|+++.++|||+.+|.|  .|+++.+++++........ .+.|          ..+.  ...+|.
T Consensus       175 -~~~--~p~~---~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~-~~~g----------~~~~--~~~a~l  235 (366)
T PRK07582        175 -LGQ--RPLE---LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWR-LLAG----------AIPG--PFEAWL  235 (366)
T ss_pred             -ccc--Cchh---cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHH-HHhC----------CCCC--HHHHHH
Confidence             121  1333   4789999999999878777  5877766655433221111 1111          1111  225666


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +++  |.+-+..+.++..+++..+++.|++.|.++-+.|
T Consensus       236 ~~r--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~y  272 (366)
T PRK07582        236 AHR--SLGTLGLRFARQCANALAVAELLAGHPAVRGVRY  272 (366)
T ss_pred             HHh--ccccHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            654  4456778888999999999999999998865443

>PRK07777 aminotransferase; Validated

Probab=99.75  E-value=2e-16  Score=159.60  Aligned_cols=243  Identities=16%  Similarity=0.143  Sum_probs=168.5

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      ..|...++..++++.+.+++.+.+|.+... ..++  ++|+|+++|+.+++.+..     .+|   ++|+++.+.|..+.
T Consensus        55 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~~i--~~t~G~~~al~~~~~~~~-----~~g---d~vli~~p~y~~~~  123 (387)
T PRK07777         55 NQYPPGPGIPELRAAIAAQRRRRYGLEYDP-DTEV--LVTVGATEAIAAAVLGLV-----EPG---DEVLLIEPYYDSYA  123 (387)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCcE--EEeCCcHHHHHHHHHHhc-----CCC---CEEEEeCCCchhhH
Confidence            445555777888888888888888875321 0026  899999999998888764     366   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          241 KAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      .+++..|.+++.+++++   ++.+|++++++++++++++|++++|+||||.+.+   +++|.++|+++++++++|++|+.
T Consensus       124 ~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~  203 (387)
T PRK07777        124 AVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEH  203 (387)
T ss_pred             HHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchh
Confidence            99999999999999875   3579999999999989999999999999999865   88999999999999999999976


Q ss_pred             hhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCCC
Q 013675          315 FVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gsr  389 (438)
                      +...  ....  . ++. + ...+.+++..+++|.+. .+..+|+++.++ ++.+......  ..|..          +.
T Consensus       204 ~~~~--~~~~--~-~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~-~l~~~~~~~~~~~~~~~----------~~  267 (387)
T PRK07777        204 LVFD--GARH--L-PLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPA-PLIAAVRAAKQYLTYVG----------GA  267 (387)
T ss_pred             cccC--CCCc--c-cHhhCCCCcCcEEEEeechhhccCcCceeEEEecCH-HHHHHHHHHHhhcccCC----------CC
Confidence            5531  1100  1 111 1 12346788899999943 233478876554 3332211111  01110          11


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +  ...++..++. .+....++..+...++++++.+.|++. +++
T Consensus       268 ~--~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~  308 (387)
T PRK07777        268 P--FQPAVAHALD-HEDAWVAALRDSLQAKRDRLAAGLAEA-GFE  308 (387)
T ss_pred             H--HHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence            1  1111222222 234556677788888999999999875 443

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.75  E-value=2.6e-17  Score=164.16  Aligned_cols=237  Identities=13%  Similarity=0.051  Sum_probs=164.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEc-CChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMT-SGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDK  241 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t-~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~  241 (438)
                      ..++.+.++.+++++.+++++|.+++.   ++  +++ ++||.++.+++.++..    +     +.+++....|.+ +.+
T Consensus        34 hr~~~f~~~~~~~r~~l~~l~~~~~~~---~v--~f~~gs~T~a~~~~~~~l~~----~-----~~l~i~~G~~~~~~~~   99 (361)
T TIGR01366        34 HRQAPVKNLVGRVREGLAELFSLPDGY---EV--ILGNGGATAFWDAATFGLIE----K-----KSLHLSFGEFSSKFAK   99 (361)
T ss_pred             cCChHHHHHHHHHHHHHHHHhCCCCCc---eE--EEECCchhHHHHHHHHhccc----c-----cccEEecCHHHHHHHH
Confidence            456778899999999999999996542   14  664 6699999999988741    1     234555555544 445


Q ss_pred             HHhhc--CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          242 AAQYF--NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       242 a~~~~--Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      .+...  +.+++.++.+++..++.     .++++|++|+++|.+|.||.+.|+++|   ++++|++++||++++.+..  
T Consensus       100 ~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~--  169 (361)
T TIGR01366       100 AVKLAPWLGEPIIVTADPGSAPEP-----QADPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGL--  169 (361)
T ss_pred             HHHhhhccCCceEEecCCCCCCCC-----ccCCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCC--
Confidence            55542  23777777765443333     457789999999999999999999988   5889999999999653333  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc--------ccccCCCc--cCCCCccCCC
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA--------VTEWSGGL--YVSPTVAGSR  389 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~--------~~~~~g~~--~~~~~~~gsr  389 (438)
                               ++|..  .+|++++++||++.+|+|.++++++++.+.+..-..        ..+|....  .......++.
T Consensus       170 ---------~idv~--~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp  238 (361)
T TIGR01366       170 ---------PVDIA--ETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTP  238 (361)
T ss_pred             ---------CCCHH--HCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCc
Confidence                     35554  389999999999777778887777765442221000        00000000  0001222344


Q ss_pred             CCchHHHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          390 PGGLIAGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +-..++++..+++++..+ |++.+.++..+++++++++|.+++++++
T Consensus       239 ~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~  285 (361)
T TIGR01366       239 AIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATP  285 (361)
T ss_pred             hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            444566888999999877 6999999999999999999999876543

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK15029 arginine decarboxylase; Provisional

Probab=99.75  E-value=6.8e-17  Score=171.60  Aligned_cols=231  Identities=15%  Similarity=0.120  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ...+..+..|++||++..-       .+|+|+|.+|..++.++.     ++|   +.|+++..+|-|+..++.+.|++++
T Consensus       206 ~I~eAq~~aA~~fgA~~t~-------FlvNGST~gn~a~i~a~~-----~~g---d~Vlv~RN~HKSv~~al~L~ga~Pv  270 (755)
T PRK15029        206 AFGESEKYAARVFGADRSW-------SVVVGTSGSNRTIMQACM-----TDN---DVVVVDRNCHKSIEQGLILTGAKPV  270 (755)
T ss_pred             HHHHHHHHHHHHhCCCcEE-------EEeCChhHHHHHHHHHhc-----CCC---CEEEeecccHHHHHHHHHHcCCeEE
Confidence            3455666899999998763       789999999999888877     378   9999999999999999999999999


Q ss_pred             EeeCCC-----CCccC-----HHHHHHhhccC--cE--------EEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675          252 RVPVDK-----EFRAD-----VKAIKKYINRN--TV--------LIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       252 ~v~~~~-----~~~~d-----~~~Le~~I~~~--t~--------~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a  311 (438)
                      +++...     .+.++     ++.++++|.++  ++        ++++++||+ .|.+.|+++|+++|++++++++||+|
T Consensus       271 yl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEA  349 (755)
T PRK15029        271 YMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEA  349 (755)
T ss_pred             EecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECc
Confidence            997542     23355     99999999653  33        899999988 89999999999999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCC-Ccc-----CCCCcc-EEEeCCCCCCCCCCCcEEEEEeccc--ccccchhcccccCCCccCC
Q 013675          312 LGGFVLPFAKKLGYPIPP-FDF-----SVQGVT-SISVDVHKYGLAPKGTSVVLYRNRE--IRKHQFVAVTEWSGGLYVS  382 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~-~~~-----~~~gvd-sis~s~hK~~~~p~g~g~l~~r~~~--~~~~~~~~~~~~~g~~~~~  382 (438)
                      ||+... |...    .|. ...     ...|+| .++-|+||.+.+-..++++.++++.  +....+.....        
T Consensus       350 hGah~~-F~~~----~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~--------  416 (755)
T PRK15029        350 WYGYAR-FNPI----YADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYM--------  416 (755)
T ss_pred             cccccc-cCcc----ccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHH--------
Confidence            987542 3221    222 111     126888 8899999999888899999997652  22111111000        


Q ss_pred             CCccCCCCCchHHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          383 PTVAGSRPGGLIAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       383 ~~~~gsr~~~~ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      .....|.+..+++++-.+.+++-. .| .+..++..+.+..+++.|.++++
T Consensus       417 ~~qSTSPSY~LmASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~~~  466 (755)
T PRK15029        417 MHATTSPLYAICASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhccc
Confidence            011123444567788888776644 34 56678888889999999988765

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.75  E-value=1.4e-16  Score=145.02  Aligned_cols=233  Identities=15%  Similarity=0.093  Sum_probs=178.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      -|.+..+.+    .+++++|+|..        -+|.|+.+|-..++.+++.     +|   |-|++...+|++..-+++.
T Consensus        60 kPpI~~F~~----dlaeFlg~D~~--------R~t~GARe~KfavMhal~~-----~g---d~vV~D~~aHYttyvAAEr  119 (382)
T COG1103          60 KPPIKDFLE----DLAEFLGMDEV--------RVTAGAREAKFAVMHALCK-----EG---DWVVVDSLAHYTTYVAAER  119 (382)
T ss_pred             CCcHHHHHH----HHHHHhCCcee--------eecccchhhHHHHHHHhcc-----CC---CEEEEcCcchHHHHHHHHh
Confidence            344444443    49999999864        6999999999999999873     78   9999999999999999999


Q ss_pred             cCcEEEEeeCC--CCCccCHHHHHHhhcc-------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675          246 FNIKLWRVPVD--KEFRADVKAIKKYINR-------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       246 ~Gi~v~~v~~~--~~~~~d~~~Le~~I~~-------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      .|+++..||-.  +++.++++...+.|++       .+.+.+++++....|.+.|.+.++++|++||+++.+.+||.-+-
T Consensus       120 agl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Gr  199 (382)
T COG1103         120 AGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGR  199 (382)
T ss_pred             cCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecc
Confidence            99999999965  4899999999888853       37899999999999999999999999999999999999997554


Q ss_pred             hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc-cccCCCccCCCCccCCCCCchHH
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV-TEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~-~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                      +           |...+..|+|+++.|+||.+-+...+|++.++.+ .....+..+ ..|+..- . ..+-.+-.|+.++
T Consensus       200 m-----------pvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE-~ae~V~r~Sg~~~~~KE-v-ellGCT~rGapiv  265 (382)
T COG1103         200 M-----------PVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEE-WAEIVLRRSGRAFPKKE-V-ELLGCTVRGAPIV  265 (382)
T ss_pred             c-----------cccccccCCCEEEecCccchhccCCeeEEeehhH-HHHHHHhhcccccccce-e-eeecccccCchHH
Confidence            4           4667888999999999999877777999888753 222221111 0111100 0 0112345566677


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+.+++-+.  ..-..+.+.-.+.++++.++|+++.|++
T Consensus       266 TlmASfP~V--~eRVkrWdeEv~kaR~fv~elEkigg~~  302 (382)
T COG1103         266 TLMASFPHV--VERVKRWDEEVEKARWFVAELEKIGGVK  302 (382)
T ss_pred             HHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            777777554  2224556667789999999999987664

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.75  E-value=7.9e-17  Score=163.06  Aligned_cols=243  Identities=16%  Similarity=0.103  Sum_probs=168.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH-----HhcC-----------------
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR-----NKRG-----------------  223 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~-----~~~G-----------------  223 (438)
                      ...+.++|..+.+...++||++..+       +-..+|+.||+.+..++....-     .++|                 
T Consensus        90 ~~~~d~ie~l~~~ra~~lf~a~~an-------vqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~  162 (493)
T PRK13580         90 CQNVDTVEWEAAEHAKELFGAEHAY-------VQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRA  162 (493)
T ss_pred             CchHHHHHHHHHHHHHHHhCCCccc-------ccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhc
Confidence            4557788999999999999999876       6888999999999999874200     0011                 


Q ss_pred             -CCCCeEEecCCC---cCcHHHHHhhcC--cEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHH
Q 013675          224 -ITRPEMIIPVSA---HSAYDKAAQYFN--IKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELG  296 (438)
Q Consensus       224 -~~~~~Viv~~~~---h~s~~~a~~~~G--i~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~  296 (438)
                       +..|+|+.-+..   |.+........|  .+.+..++++ ++.+|.+++++.+.+++..|++++.++. |...|+++|+
T Consensus       163 ~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~  241 (493)
T PRK13580        163 ELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLR  241 (493)
T ss_pred             cCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHH
Confidence             012777654333   433222223333  4666777775 7899999999999999888888888886 5577999999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW  375 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~  375 (438)
                      ++|+++|++++||++++.++++    .+. .+ .++ ...++|++++++||+++||.| |+++++++ +......     
T Consensus       242 eia~~~gA~L~VD~AH~~Glig----g~~-~~~~~~-~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~-l~~~L~~-----  308 (493)
T PRK13580        242 EIADEVGAVLMVDMAHFAGLVA----GKV-FTGDED-PVPHADIVTTTTHKTLRGPRG-GLVLAKKE-YADAVDK-----  308 (493)
T ss_pred             HHHHHcCCEEEEECchhhceec----ccc-chhhcC-CCCCCcEEEeCChhhccCCCe-EEEEecHH-HHHHHhh-----
Confidence            9999999999999999877764    110 10 011 124799999999999889986 88777643 3222110     


Q ss_pred             CCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          376 SGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       376 ~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                           ..+.+.|+..-..+++...++..+....+.+..++..+++++|++.|.+. |+.+
T Consensus       309 -----a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~v  362 (493)
T PRK13580        309 -----GCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARL  362 (493)
T ss_pred             -----CCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence                 01223333333345566666666644456778999999999999999876 5543

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.75  E-value=2.1e-16  Score=159.92  Aligned_cols=188  Identities=17%  Similarity=0.184  Sum_probs=140.9

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..|....+..++.+.+.+++.+.+|.+   +++   ++  ++|+|+++++.++++++.+     +|.+.++|+++.+.|+
T Consensus        59 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~---~i--~it~G~~~al~~~~~~l~~-----~~~~gd~vlv~~P~y~  128 (396)
T PRK09147         59 ASYPTTAGLPALREAIAAWLERRYGLPALDPAT---QV--LPVNGSREALFAFAQTVID-----RDGPGPLVVCPNPFYQ  128 (396)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccc---eE--EECCChHHHHHHHHHHHcC-----CCCCCCEEEEcCCCcc
Confidence            445555666778888888888887854   331   26  8899999999999998763     5111288999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~  312 (438)
                      .+..+++..|++++.||+++  ++.+|++++++.+.++++++++++|+||||.+.+   +++|.++|++|++++++|.+|
T Consensus       129 ~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y  208 (396)
T PRK09147        129 IYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECY  208 (396)
T ss_pred             chHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccc
Confidence            99999999999999999974  4689999999988888999999999999999975   678888899999999999999


Q ss_pred             cchhhhhhhhcCCCCCCC------ccCCCCccEEEeCCCCC-CCCCCCcEEEEEec
Q 013675          313 GGFVLPFAKKLGYPIPPF------DFSVQGVTSISVDVHKY-GLAPKGTSVVLYRN  361 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~------~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~  361 (438)
                      +.+...  ... ...+.+      +.....-.++..++.|. +..+..+|+++..+
T Consensus       209 ~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~  261 (396)
T PRK09147        209 SEIYFD--EAA-PPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDA  261 (396)
T ss_pred             cccccC--CCC-CCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCH
Confidence            876431  000 000000      00011224777889994 56667799976543

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.75  E-value=2.9e-16  Score=159.13  Aligned_cols=240  Identities=13%  Similarity=0.130  Sum_probs=163.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      |...++..++.+.+.+++.+. +  .++++    +  ++|+|+++++.+++.++..     +|   ++|+++.++|..+.
T Consensus        69 Y~~~~g~~~lr~aia~~~~~~-~~~~~~~~----i--~~t~G~~~al~~~~~~l~~-----~g---d~v~i~~P~y~~~~  133 (401)
T TIGR01264        69 YAPTVGALSAREAIASYYHNP-DGPIEADD----V--VLCSGCSHAIEMCIAALAN-----AG---QNILVPRPGFPLYE  133 (401)
T ss_pred             CCCCCCCHHHHHHHHHHHhhc-CCCCCHHH----E--EECcChHHHHHHHHHHhCC-----CC---CEEEEeCCCChhHH
Confidence            444556666666655555442 2  34443    6  8999999999999988763     66   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      ..++..|++++.++++.  ++.+|+++++++++++++++++++|+||||.+.+   +++|+++|+++|+++++|++|..+
T Consensus       134 ~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~  213 (401)
T TIGR01264       134 TLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDM  213 (401)
T ss_pred             HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhh
Confidence            99999999999998864  5789999999999888999999999999999965   788999999999999999999866


Q ss_pred             hhhhhhhcCCCCCCCccCCCC-ccEEEeCCCCC-CCCCCCcEEEEEeccc-----ccccchhcc-cccCCCccCCCCccC
Q 013675          316 VLPFAKKLGYPIPPFDFSVQG-VTSISVDVHKY-GLAPKGTSVVLYRNRE-----IRKHQFVAV-TEWSGGLYVSPTVAG  387 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~g-vdsis~s~hK~-~~~p~g~g~l~~r~~~-----~~~~~~~~~-~~~~g~~~~~~~~~g  387 (438)
                      ...     +...+++...... -.+++.++.|. +..+..+|+++..++.     ......... ..|..          
T Consensus       214 ~~~-----~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~----------  278 (401)
T TIGR01264       214 VFS-----GATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGP----------  278 (401)
T ss_pred             ccC-----CcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCC----------
Confidence            531     0001111111111 13677788996 6666779998876421     111110000 01100          


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                        +.....++..++.....+.+++..++..+..+++.+.|+++|++.
T Consensus       279 --~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~  323 (401)
T TIGR01264       279 --CTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLR  323 (401)
T ss_pred             --CcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence              000111222233221235566777888888889999998887754

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.75  E-value=4.4e-16  Score=156.89  Aligned_cols=240  Identities=17%  Similarity=0.142  Sum_probs=166.8

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      ..|....+..++.+.+.+++.+.+|.  ++++    +  ++|+|+++|+.+++.++..     +|   ++|+++.+.|+.
T Consensus        60 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~----i--~it~G~~~al~~~~~~~~~-----~g---d~vlv~~p~y~~  125 (384)
T PRK06348         60 TRYTDSGGDVELIEEIIKYYSKNYDLSFKRNE----I--MATVGACHGMYLALQSILD-----PG---DEVIIHEPYFTP  125 (384)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCChhh----E--EEcCChHHHHHHHHHHhcC-----CC---CEEEEeCCCCcc
Confidence            44555566667888888888777665  4444    6  8999999999999998763     67   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +..+++..|.+++.+|+++  ++.+|++++++++++++++|++++|+||||.+.+   +++|.++|+++|+++++|.+|+
T Consensus       126 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~  205 (384)
T PRK06348        126 YKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYD  205 (384)
T ss_pred             hHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccc
Confidence            9999999999999998743  5679999999999888999999999999999976   6788889999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCCCC
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gsr~  390 (438)
                      .+...  .. ..+...++. ..+-.++..+..|... .+..+|+++..+ ++........  ..|..          +  
T Consensus       206 ~~~~~--~~-~~~~~~~~~-~~~~vi~~~SfSK~~~l~GlRiG~~v~~~-~~~~~~~~~~~~~~~~~----------~--  268 (384)
T PRK06348        206 GFSFY--ED-FVPMATLAG-MPERTITFGSFSKDFAMTGWRIGYVIAPD-YIIETAKIINEGICFSA----------P--  268 (384)
T ss_pred             cceeC--CC-ccchhhcCC-CcCcEEEEecchhccCCccccceeeecCH-HHHHHHHHHHHhccCCC----------C--
Confidence            76531  00 000111211 1223467778899853 456789977753 3332211111  11111          1  


Q ss_pred             CchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          391 GGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       391 ~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                         .....++...+  ..+..++..+...+.++++.+.|+++++++
T Consensus       269 ---~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~  311 (384)
T PRK06348        269 ---TISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLS  311 (384)
T ss_pred             ---HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence               11222222222  233355666667777888889988876654

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.75  E-value=7.4e-17  Score=160.91  Aligned_cols=223  Identities=16%  Similarity=0.167  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.++++++.++++    +  ++|+|+++++..++.++.      +|   + +++..+.+..+...++..|++++.+
T Consensus        58 ~~lr~~ia~~~~~~~~~----i--~it~Ga~~~l~~~~~~l~------~g---~-viv~~P~y~~~~~~~~~~g~~~~~v  121 (356)
T PRK08056         58 RHLHQALARHHQVPASW----I--LAGNGETESIFAVVSGLK------PR---R-AMIVTPGFAEYRRALQQVGCEIRRY  121 (356)
T ss_pred             HHHHHHHHHHhCcChhh----E--EECCCHHHHHHHHHHHhC------CC---C-EEEeCCCcHHHHHHHHHcCCeEEEE
Confidence            46777888889998776    6  899999999998887652      44   4 6777788888999999999999999


Q ss_pred             eCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          254 PVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       254 ~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      |+++  ++.+| +++++.+++++++|++++|+||||.+.+   +++|+++|+++++++++|++|..+..   +.... ++
T Consensus       122 ~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~---~~~~~-~~  196 (356)
T PRK08056        122 SLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIP---DETGF-IP  196 (356)
T ss_pred             ecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCC---cchHH-HH
Confidence            9874  35566 4566677788999999999999999988   78899999999999999999976542   11000 11


Q ss_pred             CCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cH
Q 013675          329 PFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQ  406 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~  406 (438)
                      .+.  ....++++.|++|+.. ....+|+++..+++...........|..               ...+..++...+ +.
T Consensus       197 ~~~--~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~~~---------------~~~~~~~a~~~l~~~  259 (356)
T PRK08056        197 QLA--DNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMPWSI---------------NAFAALAGEVILQDR  259 (356)
T ss_pred             Hhc--cCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCCch---------------hHHHHHHHHHHhCCH
Confidence            111  1234688899999944 4456899877554443322111111110               011333333333 33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ...++..++..+.++++.+.|++++++.
T Consensus       260 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~  287 (356)
T PRK08056        260 AYQQATWQWLAEEGARFYQALCALPLLT  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            4455666778888999999998887754

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.75  E-value=1.1e-16  Score=159.76  Aligned_cols=225  Identities=17%  Similarity=0.171  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.+.++   ++  ++|+|+++++.+++.++.+     +|   ++|+++.++|..+..+++..|++++.+
T Consensus        66 ~~lr~~ia~~~~~~~~~---~I--~~t~G~~~~i~~~~~~~~~-----~g---d~vlv~~P~y~~~~~~~~~~g~~~~~i  132 (356)
T PRK04870         66 AALKAALRAAMGVPAGA---DV--LLGNGSDELIQLLALACAK-----PG---ATVLAPEPGFVMYRMSAKLAGLEFVGV  132 (356)
T ss_pred             HHHHHHHHHHhCcCCCC---cE--EEcCCHHHHHHHHHHHhcC-----CC---CEEEECCCCHHHHHHHHHHcCCEEEEe
Confidence            35666788888886542   26  8999999999998887753     67   899999999999999999999999999


Q ss_pred             eCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          254 PVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      |+++++.+|++++++++. .+++++++++|+||||.+.+.+++.++++..++++++|++|..+..   .  .. .+.++ 
T Consensus       133 ~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~---~--~~-~~~~~-  205 (356)
T PRK04870        133 PLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAG---D--SW-LPRLA-  205 (356)
T ss_pred             cCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcC---c--ch-HHHHh-
Confidence            998888999999999996 4789999999999999999999888888877899999999975431   0  00 11111 


Q ss_pred             CCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cHHHHHH
Q 013675          333 SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQEGYLE  411 (438)
Q Consensus       333 ~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~~g~~~  411 (438)
                       ...-.++..+.+|++..+..+|+++.. +++.+........|..             .  ..++.++...+ ..+.+++
T Consensus       206 -~~~~vi~~~S~SK~~~~GlRiG~~i~~-~~~i~~~~~~~~~~~~-------------~--~~~q~~a~~~l~~~~~~~~  268 (356)
T PRK04870        206 -RFPNLLVMRTVSKLGLAGLRLGYLAGH-PAWIAELDKVRPPYNV-------------N--VLTQATALFALEHVDVLDA  268 (356)
T ss_pred             -hCCCEEEEecchhhhhHHHhhhhhhCC-HHHHHHHHHccCCCcC-------------C--HHHHHHHHHHHhCHHHHHH
Confidence             111246778889975555568987664 3333322111111211             0  11222222222 1234677


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCccc
Q 013675          412 NTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       412 ~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++..+.++++.+.|++++++++
T Consensus       269 ~~~~~~~~~~~l~~~L~~~~~~~~  292 (356)
T PRK04870        269 QAAQLRAERTRLAAALAALPGVTV  292 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcEE
Confidence            788888999999999998877653

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.75  E-value=2.9e-16  Score=159.21  Aligned_cols=242  Identities=17%  Similarity=0.159  Sum_probs=167.2

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..+|....+..++.+++.+++.+.+|.+  +++    +  ++|+|+++|+..++.+..     .+|   +.|+++.+.|+
T Consensus        63 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~~~-----~~g---d~vl~~~p~y~  128 (402)
T PRK06107         63 ETKYTLVNGTPALRKAIIAKLERRNGLHYADNE----I--TVGGGAKQAIFLALMATL-----EAG---DEVIIPAPYWV  128 (402)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhh----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEecCCCc
Confidence            3445555677788888999999888874  333    6  899999999999988754     367   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc-CCeEEEecc
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH-GTCLHVDLC  311 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~-~i~lhVD~a  311 (438)
                      .+..++...|.+++.+++++  ++.+|+++++++++++++++++++|+||||.+.+   +++|+++|+++ ++++++|.+
T Consensus       129 ~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~  208 (402)
T PRK06107        129 SYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDI  208 (402)
T ss_pred             CHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehh
Confidence            99888888899888888863  4679999999999989999999999999998876   56778889998 999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCc---cCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCcc
Q 013675          312 LGGFVLPFAKKLGYPIPPFD---FSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVA  386 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~---~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~  386 (438)
                      |+.+..   +  +.+.|.+.   ....+-.++..+.+|.+ +.+  .+|+++.. +++..........+.          
T Consensus       209 y~~l~~---~--~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~-~~~~~~~~~~~~~~~----------  271 (402)
T PRK06107        209 YDHIRF---D--DEPTPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGP-ADLIAAINKLQSQSS----------  271 (402)
T ss_pred             cccccc---C--CCCCCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecC-HHHHHHHHHHHHhcc----------
Confidence            975432   1  10011111   11112346666779994 434  47987654 444332111111000          


Q ss_pred             CCCCCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          387 GSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                       ....  ...++++...+  +....++..+...+..+.+.+.|++++|+.+
T Consensus       272 -~~~s--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~  319 (402)
T PRK06107        272 -SCPS--SISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSC  319 (402)
T ss_pred             -cCCC--hHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence             0111  11334444334  3455667777788888889999988766553

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.75  E-value=1.7e-16  Score=161.21  Aligned_cols=234  Identities=18%  Similarity=0.141  Sum_probs=156.8

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHHh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQ  244 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~~  244 (438)
                      .|...++|+-+.+.+++++|.+...       +++++|+.|+..++.++.     ++|   |+|+++...|.+ +...++
T Consensus        69 ~~~~~~lE~~~~~~la~l~g~~~al-------v~~~SG~~A~~~~l~al~-----~~G---D~Vl~~~~~~~~~~~~g~~  133 (416)
T PRK13034         69 CEFVDEVEALAIERAKQLFGCDYAN-------VQPHSGSQANGAVYLALL-----KPG---DTILGMSLSHGGHLTHGAK  133 (416)
T ss_pred             ChHHHHHHHHHHHHHHHHhCCCceE-------EecCCcHHHHHHHHHHhc-----CCC---CEEEEcCccceeeeecCCc
Confidence            3667778877888999999987531       567899999999999875     378   999999999987 222222


Q ss_pred             h--cCcEE--EEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          245 Y--FNIKL--WRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       245 ~--~Gi~v--~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      .  .+...  +.+++++ ++.+|++++++.+.. ++++|+++.+.  +|..-|+++|.++|+++|+++++|++++.+++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~  211 (416)
T PRK13034        134 VSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFARFREIADEVGALLMVDMAHIAGLVA  211 (416)
T ss_pred             ceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHHHHHHHHHcCCEEEEeCcccccCcc
Confidence            1  12222  3455544 677999999999854 68888775543  688889999999999999999999998765542


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~  398 (438)
                          .|.  ..  ....++|++++++||++.+|.| |+++.+++.+.......  -+.+       +.+...-..++++.
T Consensus       212 ----~g~--~~--~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~aa~~  273 (416)
T PRK13034        212 ----AGE--HP--NPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINSA--VFPG-------LQGGPLMHVIAAKA  273 (416)
T ss_pred             ----cCC--CC--CCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHhh--cCCc-------ccCCccHHHHHHHH
Confidence                121  11  1123589999999999878887 66666655433221110  0111       11111112233444


Q ss_pred             HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .++...-..+..+..++..+++++|++.|++. |+++
T Consensus       274 ~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~  309 (416)
T PRK13034        274 VAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDL  309 (416)
T ss_pred             HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence            34433322344566789999999999999877 6654

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.74  E-value=3.1e-16  Score=149.16  Aligned_cols=246  Identities=18%  Similarity=0.219  Sum_probs=172.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCC--CCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKA--SGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~--~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      |..+.|.....++    +|++++-+.+.  ++.+|  ++|+|.++|+.+++.++.+     +|   .+|++|.+.++-+.
T Consensus        99 Yaps~G~~~AR~A----VAeYl~~~l~~kl~a~DV--~ltsGC~qAIe~~i~~LA~-----p~---aNILlPrPGfp~Y~  164 (447)
T KOG0259|consen   99 YAPSVGILPARRA----VAEYLNRDLPNKLTADDV--VLTSGCSQAIELAISSLAN-----PG---ANILLPRPGFPLYD  164 (447)
T ss_pred             cCCccccHHHHHH----HHHHhhcCCCCccCcCce--EEeccchHHHHHHHHHhcC-----CC---CceecCCCCCchHH
Confidence            5556676655555    44443332211  13347  9999999999999999874     67   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      .-+.+.|+++++.++-+  +|++|++.+|.++++||.++++.+|+||+|.+..   +++|+++|+++++.++.|++|+.+
T Consensus       165 ~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~  244 (447)
T KOG0259|consen  165 TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHT  244 (447)
T ss_pred             HhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhccee
Confidence            99999999999998753  8999999999999999999999999999999965   899999999999999999999887


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCC-CCCCCCC-CCcEEEEEeccccc-ccchh--cccccCCCccCCCCccCCCC
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDV-HKYGLAP-KGTSVVLYRNREIR-KHQFV--AVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~-hK~~~~p-~g~g~l~~r~~~~~-~~~~~--~~~~~~g~~~~~~~~~gsr~  390 (438)
                      +..  .+ .+ +| +..-..-|-++++++ .|-...| ...|++.+.|+.-. +..-.  ...++.+-.        ..|
T Consensus       245 vfg--~~-pf-vp-mg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~--------~~p  311 (447)
T KOG0259|consen  245 VFG--DK-PF-VP-MGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDII--------PGP  311 (447)
T ss_pred             ecC--CC-Cc-cc-hhhccccCceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHhcc--------CCc
Confidence            752  11 11 11 111122245566553 4543555 56999999876421 11000  000000000        111


Q ss_pred             CchH-HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          391 GGLI-AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       391 ~~~i-a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+.+ +++-.-|..--++-+.....-...+++...+.|+++|+++.
T Consensus       312 ~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~c  357 (447)
T KOG0259|consen  312 ATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTC  357 (447)
T ss_pred             cHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCccc
Confidence            1222 23333444444567888888899999999999999999884

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.74  E-value=5.6e-16  Score=156.78  Aligned_cols=240  Identities=20%  Similarity=0.239  Sum_probs=161.4

Q ss_pred             cccchhHHHHHHHHHHHHHHH-hCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAAL-LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l-~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      |....+..++.+.+.+++... .+.++++    +  ++|+|+++++.+++.++.     .+|   ++|+++.+.|..+..
T Consensus        62 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---d~Vl~~~p~y~~~~~  127 (397)
T PRK07568         62 YSHSQGIPELREAFAKYYKKWGIDVEPDE----I--LITNGGSEAILFAMMAIC-----DPG---DEILVPEPFYANYNG  127 (397)
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCCcce----E--EEcCChHHHHHHHHHHhc-----CCC---CEEEEecCCCccHHH
Confidence            433455556666555555421 1344554    6  899999999999988764     367   899999999999888


Q ss_pred             HHhhcCcEEEEeeCCC-C-Cc-cCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          242 AAQYFNIKLWRVPVDK-E-FR-ADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~-~-~~-~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      .++..|++++.++++. + +. .|++++++++++++++|++++|+||||.+.+   +++|+++|+++|+++++|++|+.+
T Consensus       128 ~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~  207 (397)
T PRK07568        128 FATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREF  207 (397)
T ss_pred             HHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhc
Confidence            8899999999999863 3 33 3689999999999999999999999999875   788999999999999999999876


Q ss_pred             hhhhhhhcCCCCCC-CccCC-CCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc-cccCCCccCCCCccCCCCC
Q 013675          316 VLPFAKKLGYPIPP-FDFSV-QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV-TEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       316 ~~pf~~~~g~~~p~-~~~~~-~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~-~~~~g~~~~~~~~~gsr~~  391 (438)
                      ...     +...+. ..+.. ..-.++..|.+|.+. .+..+|+++..++++........ ..|..          +.  
T Consensus       208 ~~~-----~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~----------s~--  270 (397)
T PRK07568        208 VYD-----GLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSP----------PT--  270 (397)
T ss_pred             ccC-----CCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhccCCC----------Cc--
Confidence            431     100111 11111 122366778899843 34568998876555543221111 01100          11  


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ....++-.++. .+.+.+++..+...+.++.+.+.|++++++.
T Consensus       271 ~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  312 (397)
T PRK07568        271 LEQIGAAALLD-TPESYFDEVREEYKKRRDILYEELNKIPGVV  312 (397)
T ss_pred             HHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            11112222232 1345567777788889999999998877654

>PRK09105 putative aminotransferase; Provisional

Probab=99.74  E-value=1.1e-16  Score=160.34  Aligned_cols=220  Identities=20%  Similarity=0.130  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++.+|.++++    |  ++|+|+++++.+++.++.+     +|   ++|++++++|+.+...++.+|++++.
T Consensus        80 ~~~Lr~aia~~~~v~~e~----I--~it~Gs~~ai~~~~~~l~~-----~g---d~Vli~~P~y~~~~~~~~~~g~~~~~  145 (370)
T PRK09105         80 EDDLRTLFAAQEGLPADH----V--MAYAGSSEPLNYAVLAFTS-----PT---AGLVTADPTYEAGWRAADAQGAPVAK  145 (370)
T ss_pred             HHHHHHHHHHHhCcChhh----E--EEcCChHHHHHHHHHHHcC-----CC---CEEEEeCCChHHHHHHHHHcCCeEEE
Confidence            345666788889998876    7  8999999999999988763     67   89999999999999999999999999


Q ss_pred             eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +|.++++.+|++++++. .++++++++++|+||||.+.+.++|.++++.  +++++++|++|..+.-    .    .+..
T Consensus       146 v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~----~----~s~~  216 (370)
T PRK09105        146 VPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSD----A----PSVV  216 (370)
T ss_pred             ecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhcc----C----cchH
Confidence            99988889999999987 5678999999999999999998888888764  4899999999954321    0    0011


Q ss_pred             ccCCCCccEE-EeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-H
Q 013675          331 DFSVQGVTSI-SVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-Q  406 (438)
Q Consensus       331 ~~~~~gvdsi-s~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~  406 (438)
                      +......+++ ..++.|. ++.+|  +|+++.. +++.+.....  .+            ....  ..++.++...+. .
T Consensus       217 ~~~~~~~~vi~~~SfSK~-~g~~GlRiG~~v~~-~~~i~~l~~~--~~------------~~~~--~~~~~aa~~~L~~~  278 (370)
T PRK09105        217 DLVAQRKDLIVLRTFSKL-YGMAGMRLGLAAAR-PDLLAKLARF--GH------------NPLP--VPAAAAGLASLRDP  278 (370)
T ss_pred             HHHhhCCCEEEEecccHh-hcCCccceeeeecC-HHHHHHHHhc--CC------------CCcC--HHHHHHHHHHHhCH
Confidence            2211223444 4567788 55555  9987764 3333321111  00            0011  123344444343 3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +.+++..++..++.+++.+.|++. +++
T Consensus       279 ~~~~~~~~~~~~~r~~l~~~L~~~-g~~  305 (370)
T PRK09105        279 KLVPQRRAENAAVREDTIAWLKKK-GYK  305 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CCC
Confidence            445666678888889999999875 554

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.74  E-value=4.6e-17  Score=162.07  Aligned_cols=225  Identities=18%  Similarity=0.181  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++++++.+|+++++    |  ++|+|+++++.++++++..     +|  .++|+++.++|+.+...++..|++++.+
T Consensus        60 ~~l~~~~a~~~g~~~~~----I--~~~~Gs~e~i~~~~~~~~~-----~g--~~~vli~~P~y~~y~~~~~~~G~~~~~v  126 (351)
T PRK01688         60 KAVIENYAAYAGVKPEQ----V--LVSRGADEGIELLIRAFCE-----PG--KDAILYCPPTYGMYSVSAETIGVEIRTV  126 (351)
T ss_pred             HHHHHHHHHHhCCCHHH----E--EEcCCHHHHHHHHHHHhcC-----CC--CCEEEEcCCCHHHHHHHHHHcCCEEEEe
Confidence            46777899999998876    7  8999999999999988652     32  2689999999999999999999999999


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      |+++++.+|++++++++ ++|++|++++||||||.+.+.+++.++++..  ++++++|++|..|...  ..      ..+
T Consensus       127 ~~~~~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~--~s------~~~  197 (351)
T PRK01688        127 PTLDNWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQ--AS------LAG  197 (351)
T ss_pred             ecCCCCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCC--CC------hHH
Confidence            99888999999999988 5899999999999999999887777776542  6889999999765410  00      001


Q ss_pred             c-CCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          332 F-SVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       332 ~-~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      . ....--++.-+++|. ++..  .+|+++.+ +++.+........|..+          ..  ...++-++|..-+.+.
T Consensus       198 ~~~~~~n~iv~rSfSK~-~glaGlRiGy~i~~-~~~i~~l~~~~~~~~v~----------~~--~~~~a~~~L~~~~~~~  263 (351)
T PRK01688        198 WLAEYPHLVILRTLSKA-FALAGLRCGFTLAN-EEVINLLLKVIAPYPLS----------TP--VADIAAQALSPQGIAA  263 (351)
T ss_pred             HHhhCCCEEEEecchHh-hcCHHHHHhHHhCC-HHHHHHHHhccCCCCCC----------HH--HHHHHHHHHhcchHHH
Confidence            0 111124677789997 4544  46887654 44433222222222211          00  0111112332212345


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +++..+...+.++++.+.|+++++++
T Consensus       264 ~~~~~~~~~~~r~~l~~~L~~~~~~~  289 (351)
T PRK01688        264 MRERVAEINANRQWLIAALKEIPCVE  289 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            66777788888899999999887764

>PRK08068 transaminase; Reviewed

Probab=99.74  E-value=7.2e-16  Score=155.65  Aligned_cols=242  Identities=14%  Similarity=0.118  Sum_probs=165.8

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCC--CCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGN--KEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      .|...++..++.+++.+++.+.+|.  +++ +    +  ++|+|+++++..++.++.     .+|   ++|+++.++|+.
T Consensus        65 ~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~----i--~it~G~~~~l~~~~~~~~-----~~g---d~vlv~~P~y~~  130 (389)
T PRK08068         65 KYSPFRGYPFLKEAAADFYKREYGVTLDPETE----V--AILFGGKAGLVELPQCLM-----NPG---DTILVPDPGYPD  130 (389)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----E--EEcCCcHHHHHHHHHHhC-----CCC---CEEEEcCCCCcc
Confidence            3444566778888888888776774  444 3    6  899999999999888765     367   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccCH---HHHHHHHHHcCCeEEEecccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPI---QELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +..+++..|++++.+|+++  ++.+|++++++++++++++|++++|+||||.+.+.   ++|.++|+++++++++|.+|+
T Consensus       131 ~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~  210 (389)
T PRK08068        131 YLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYG  210 (389)
T ss_pred             hHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhh
Confidence            9999999999999999975  56789999999998889999999999999999885   578888999999999999997


Q ss_pred             chhhhhhhhcCCCCCCCcc-CCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          314 GFVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      .+..   +.. ...+-... ......++..++.|.+ .++..+|+++. ++++..........|..          +-+.
T Consensus       211 ~~~~---~~~-~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~l~~~l~~~~~~~~~----------~~~~  275 (389)
T PRK08068        211 AIGF---DGQ-KPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG-NESVIEAINLLQDHLFV----------SLFG  275 (389)
T ss_pred             hhcc---CCC-CCcChhhCCCccCCEEEEecchhccCCccceeEeEec-CHHHHHHHHHHHhhccC----------CCCh
Confidence            5432   100 00110111 1122346777889994 24455899765 44444322111111111          1111


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ....++..++. -+.+.+++..++..+..+++.+.|+++ |+.
T Consensus       276 ~~q~~~~~~l~-~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~  316 (389)
T PRK08068        276 AIQDAAIEALL-SDQSCVAELVARYESRRNAFISACREI-GWE  316 (389)
T ss_pred             HHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            11111222221 134556777888888888899998876 443

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.74  E-value=4e-16  Score=157.88  Aligned_cols=243  Identities=16%  Similarity=0.078  Sum_probs=159.2

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      .+|..+++..++|++    +++++|.+.      +  ++|+|||+|+.++++++.     ++|   |+| ++.+.+.++.
T Consensus        47 ~~Y~~~~g~~~Leea----ia~~~g~~~------v--v~t~~Gt~Al~la~~al~-----~pG---D~V-~~~~~f~~~~  105 (431)
T cd00617          47 EAYAGSKSFYDLEDA----VQDLFGFKH------I--IPTHQGRGAENILFSILL-----KPG---RTV-PSNMHFDTTR  105 (431)
T ss_pred             CccCCCCCHHHHHHH----HHHHHCCCe------E--EEcCCHHHHHHHHHHHhC-----CCC---CEE-ccCCcccchH
Confidence            346778888877775    677777753      4  899999999999998875     377   766 5777777888


Q ss_pred             HHHhhcCcEEEEeeCCC----------CCccCHHHHHHhhccC----cEEEEEecCCCCC-ccccC---HHHHHHHHHHc
Q 013675          241 KAAQYFNIKLWRVPVDK----------EFRADVKAIKKYINRN----TVLIVGSAPGFPH-GIIDP---IQELGELALSH  302 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~----------~~~~d~~~Le~~I~~~----t~~vv~~~~~~~t-G~idd---i~~I~~la~~~  302 (438)
                      ..+.+.|.+++.+++++          .+.+|+++|+++|+++    +++|+++.|+|++ |.+-+   +++|+++|++|
T Consensus       106 ~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~  185 (431)
T cd00617         106 GHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKY  185 (431)
T ss_pred             HHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHc
Confidence            88999999999999974          2449999999999865    7899999999998 88764   66889999999


Q ss_pred             CCeEEEeccccchhhhhhhh--cCCCCCCCcc----CCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC
Q 013675          303 GTCLHVDLCLGGFVLPFAKK--LGYPIPPFDF----SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS  376 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~--~g~~~p~~~~----~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~  376 (438)
                      |+++|.|+|....-..|.+.  .|+.-.++..    -....|++++++||.+.+|.| |+++.+++++.+..........
T Consensus       186 gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~~~~~~~~~~  264 (431)
T cd00617         186 GIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEEARQRVVLYE  264 (431)
T ss_pred             CCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHHHHHhccccC
Confidence            99999999954321112110  1110001100    012469999999999878774 7778877655443211100011


Q ss_pred             CCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          377 GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       377 g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +     ....|.-.+..++++..+|....+   .+..++..+.++++.+.|++. |+.
T Consensus       265 ~-----~~~~gG~~~r~~~A~A~gL~e~~~---~~~l~~~~~~r~~l~~~L~~~-G~~  313 (431)
T cd00617         265 G-----FVTYGGMAGRDMEALAQGLREAVE---EDYLRHRVEQVRYLGDRLDEA-GVP  313 (431)
T ss_pred             C-----ccccccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHC-CCC
Confidence            1     111121122223344334432111   234555555678898999876 543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.74  E-value=6.3e-16  Score=156.88  Aligned_cols=235  Identities=16%  Similarity=0.187  Sum_probs=165.2

Q ss_pred             hhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          167 QSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      ++..++.+.+.+++.+.+|.+   +++   +|  ++|+|+++++..++.++.+     +|   ++|+++.+.|+.+...+
T Consensus        81 ~G~~~lr~aia~~~~~~~g~~~~~~~~---~I--~it~Gs~~al~~~~~~~~~-----~g---d~Vlv~~P~y~~~~~~~  147 (410)
T PRK06290         81 NGIQEFKEAAARYMEKVFGVKDIDPVT---EV--IHSIGSKPALAMLPSCFIN-----PG---DVTLMTVPGYPVTGTHT  147 (410)
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcCCCcc---eE--EEccCHHHHHHHHHHHhCC-----CC---CEEEEeCCCCccHHHHH
Confidence            677788888888888777754   331   26  8999999999999888763     67   89999999999999999


Q ss_pred             hhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          244 QYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      +.+|++++.+|+++  ++.+|++++++++.+++++|++++|+||||.+.+   +++|.++|++||+++++|.+|+.+...
T Consensus       148 ~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~  227 (410)
T PRK06290        148 KYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFD  227 (410)
T ss_pred             HHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeC
Confidence            99999999999985  5678999999999889999999999999999988   578888899999999999999865421


Q ss_pred             hhhhcCCCCCCCcc-CCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675          319 FAKKLGYPIPPFDF-SVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       319 f~~~~g~~~p~~~~-~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                           +...+-... .....+++..|..|.. .++..+|+++.. +++..........+..+             .....
T Consensus       228 -----~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~-~~l~~~l~~~~~~~~~~-------------~~~~~  288 (410)
T PRK06290        228 -----GKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGN-ELIVKAFATVKDNNDSG-------------QFIAI  288 (410)
T ss_pred             -----CCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeC-HHHHHHHHHHHhccccC-------------CcHHH
Confidence                 000110111 1123568888999994 244458987753 44433221111111110             00112


Q ss_pred             HHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          397 AWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       397 ~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +.++...+.. +..++..++..+.++++.+.|++. |+.
T Consensus       289 q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  326 (410)
T PRK06290        289 QKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV-GFK  326 (410)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence            2333333322 335566777788888999999876 443

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.74  E-value=2e-16  Score=159.80  Aligned_cols=228  Identities=15%  Similarity=0.108  Sum_probs=156.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      ..+..++.+++.+++++++|.+ ++    +  ++|+| ++++..+++++.     ++|   |+|+++++.|+++...++.
T Consensus        82 ~~G~~~l~~~l~~~la~~~g~~-~~----i--~~tsG-~~a~~~~~~~l~-----~~g---d~vi~~~~~~~~~~~~~~~  145 (397)
T PRK06939         82 ICGTQDLHKELEEKLAKFLGTE-DA----I--LYSSC-FDANGGLFETLL-----GKE---DAIISDALNHASIIDGVRL  145 (397)
T ss_pred             ccCCcHHHHHHHHHHHHHhCCC-cE----E--EEcCh-HHHHHHHHHHhC-----CCC---CEEEEEhhhhHHHHHHHHh
Confidence            4566778889999999999975 33    3  55554 888888887764     367   9999999999999999999


Q ss_pred             cCcEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          246 FNIKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       246 ~Gi~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      .|.+++.++.     .|++++++++++      ++++|+..+..+++|.+.++++|.++|++||+++++|++|+.+... 
T Consensus       146 ~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~-  219 (397)
T PRK06939        146 CKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVG-  219 (397)
T ss_pred             cCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcC-
Confidence            9999887764     488999888864      6888888888899999999999999999999999999999522221 


Q ss_pred             hhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675          320 AKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       320 ~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~  398 (438)
                        ..|.. .+..+. ..++|+++.++||++.++ ..|+++.+ +++.+........+        ...++......+++.
T Consensus       220 --~~~~~~~~~~~~-~~~~~i~~~S~sK~~~g~-r~G~v~~~-~~~~~~l~~~~~~~--------~~~~~~~~~~~~a~~  286 (397)
T PRK06939        220 --ENGRGTVEHFGV-MDRVDIITGTLGKALGGA-SGGYTAGR-KEVIDWLRQRSRPY--------LFSNSLAPAIVAASI  286 (397)
T ss_pred             --CCCCCHHHHcCC-CCCCcEEEEECHHHhCcc-CceEEEeC-HHHHHHHHHhCccc--------cccCCCCHHHHHHHH
Confidence              11100 000111 235789999999996455 45887665 33333211111111        011111222234455


Q ss_pred             HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++++.+.  ...+..++..++++++.+.|+++
T Consensus       287 ~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~  316 (397)
T PRK06939        287 KVLELLE--ESDELRDRLWENARYFREGMTAA  316 (397)
T ss_pred             HHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc
Confidence            5565442  23566778888899999998875

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.73  E-value=7.3e-17  Score=160.80  Aligned_cols=222  Identities=15%  Similarity=0.173  Sum_probs=154.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++.+|+++++    |  ++|+|+++++.+++.++..     +|  .++|+++.+.|+.+...++.+|++++.+|
T Consensus        64 ~Lr~aia~~~~~~~~~----I--~it~Gs~~~i~~~~~~~~~-----~g--~d~vlv~~P~y~~y~~~~~~~g~~v~~v~  130 (354)
T PRK04635         64 ELINAYSAYAGVAPEQ----I--LTSRGADEAIELLIRAFCE-----PG--QDSIACFGPTYGMYAISAETFNVGVKALP  130 (354)
T ss_pred             HHHHHHHHHhCcCHHH----E--EEeCCHHHHHHHHHHHhcC-----CC--CCeEEEcCCChHHHHHHHHHcCCEEEEEe
Confidence            4556678888998876    7  8999999999999988752     33  16899999999999999999999999999


Q ss_pred             CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc-CCeEEEeccccchhhhhhhhcCCCCCCCccC
Q 013675          255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH-GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS  333 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~-~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~  333 (438)
                      +++++.+|++.+++ + ++|++|++++|+||||.+.|.+++.++++.. ++++++|++|..+...  ..    ...+...
T Consensus       131 ~~~~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~--~s----~~~~~~~  202 (354)
T PRK04635        131 LTADYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPE--YS----VADLLAS  202 (354)
T ss_pred             cCCCCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccC--cc----hHHHHhh
Confidence            98788999999974 4 6899999999999999999999999999864 7999999999755421  00    0011111


Q ss_pred             CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH---cHHHH
Q 013675          334 VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGY  409 (438)
Q Consensus       334 ~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~  409 (438)
                      ... -++..+++|+.. ++..+|+++.+ +++.+........|..            +   .....+++..+   |.+.+
T Consensus       203 ~~~-~iv~~S~SK~~~l~GlRlG~~i~~-~~~~~~l~~~~~~~~~------------~---~~~~~~a~~~l~~~~~~~~  265 (354)
T PRK04635        203 YPN-LVVLRTLSKAFALAGARCGFTLAN-EELIEILMRVIAPYPV------------P---LPVSEIATQALSEAGLARM  265 (354)
T ss_pred             CCC-EEEEechHHHhhhhHHHHhhhhCC-HHHHHHHHhhcCCCCC------------C---HHHHHHHHHHHhcccHHHH
Confidence            122 256778899932 34457987665 4443322111111110            0   11222333333   23445


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          410 LENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ++..++..+.++++.+.|+++++++
T Consensus       266 ~~~~~~~~~~r~~l~~~L~~~~~~~  290 (354)
T PRK04635        266 KFQVLDLNAQGARLQAALSMYGGAK  290 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCce
Confidence            5666677778889999998886554

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.73  E-value=3e-16  Score=157.82  Aligned_cols=222  Identities=18%  Similarity=0.118  Sum_probs=160.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++++|+++++    |  ++|+|+++++.+++.++.+     +|   ++|+++.+.|..+...++..|++++.+|
T Consensus        90 ~lr~~ia~~~~~~~~~----I--~~t~Ga~~~i~~~~~~~~~-----~g---d~Vlv~~P~y~~y~~~~~~~g~~~~~v~  155 (380)
T PLN03026         90 RLRAALAEDSGLESEN----I--LVGCGADELIDLLMRCVLD-----PG---DKIIDCPPTFGMYVFDAAVNGAEVIKVP  155 (380)
T ss_pred             HHHHHHHHHhCcChhh----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEEcCCChHHHHHHHHHcCCEEEEee
Confidence            5677888899998776    6  8999999999998887652     67   8999999999999999999999999999


Q ss_pred             CCCCCccCHHHHHHhh-ccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccC
Q 013675          255 VDKEFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS  333 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I-~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~  333 (438)
                      .++++.+|++++++++ ++++++|++++|+||||.+.|.+++.++++.. +++++|++|..+...     +......  .
T Consensus       156 ~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~-----~~~~~~~--~  227 (380)
T PLN03026        156 RTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQ-----ESRMKWV--K  227 (380)
T ss_pred             cCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCC-----cchHHHH--H
Confidence            9878899999999999 77899999999999999999999999999865 899999999754320     0000001  1


Q ss_pred             CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHHHH
Q 013675          334 VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLE  411 (438)
Q Consensus       334 ~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~~~  411 (438)
                      ...-.++..++.|... ++..+|+++.. +++..........|.-             .  ..++.++...+. .+.+++
T Consensus       228 ~~~~viv~~SfSK~~glaGlRiGy~~~~-~~~i~~l~~~~~~~~~-------------~--~~~q~aa~~aL~~~~~~~~  291 (380)
T PLN03026        228 KYDNLIVLRTFSKRAGLAGLRVGYGAFP-LSIIEYLWRAKQPYNV-------------S--VAAEVAACAALSNPKYLED  291 (380)
T ss_pred             hCCCEEEEecchHhhcCccccceeeecC-HHHHHHHHHhcCCCCC-------------C--HHHHHHHHHHhhCHHHHHH
Confidence            1123577788899932 44558887654 3333221111111110             0  113333333332 244567


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCcc
Q 013675          412 NTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       412 ~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..++..+..+++.+.|+++++++
T Consensus       292 ~~~~~~~~r~~l~~~L~~~~~~~  314 (380)
T PLN03026        292 VKNALVEERERLFGLLKEVPFLE  314 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCe
Confidence            77778888899999998876543

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.73  E-value=6.3e-16  Score=154.95  Aligned_cols=225  Identities=16%  Similarity=0.082  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      .+++.+++++++|.+.      +  ++|+|||+|+.+++.++.    .++|   |+|+++..+|++...++...|++++.
T Consensus        33 ~~~~e~~la~~~g~~~------~--v~~~sgt~aL~~~l~al~----~~pG---d~Viv~~~t~~~~~~~~~~~G~~~v~   97 (376)
T TIGR02379        33 SRRCETWLENRTGTKK------A--LLTPSCTAALEMAALLLD----IQPG---DEVIMPSYTFVSTANAFVLRGAKIVF   97 (376)
T ss_pred             HHHHHHHHHHHhCCCe------E--EEeCCHHHHHHHHHHHcC----CCCc---CEEEECCCCcHHHHHHHHHcCCEEEE
Confidence            3445556788887752      4  899999999999888752    1367   89999999999999999999999999


Q ss_pred             eeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          253 VPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       253 v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      +++++ ++.+|+++++++++++|++|+.   ++++|...|+++|.++|++||+++++|++++-+..            ++
T Consensus        98 vd~d~~~~~~d~~~le~~i~~~tk~Iip---~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~------------~~  162 (376)
T TIGR02379        98 VDIRPDTMNIDETLIESAITHRTKAIVP---VHYAGVACDMDTIMALANKHQLFVIEDAAQGVMST------------YK  162 (376)
T ss_pred             EecCCCcCCCCHHHHHHhcCcCceEEEE---eCCCCCccCHHHHHHHHHHCCCEEEEECccccCCc------------cC
Confidence            99987 4789999999999999999874   45689999999999999999999999999863321            11


Q ss_pred             cCCCCc--cEEEeCCC--CCCCCCCCcEEEEEecccccccchhccc-ccCCCc-c------CCCCccCC--CCCchHHHH
Q 013675          332 FSVQGV--TSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGL-Y------VSPTVAGS--RPGGLIAGA  397 (438)
Q Consensus       332 ~~~~gv--dsis~s~h--K~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~-~------~~~~~~gs--r~~~~ia~~  397 (438)
                      .+..|.  |..++|+|  |.+..+...|+++++++++.+....... ...... +      ......|.  |...+.|++
T Consensus       163 ~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~  242 (376)
T TIGR02379       163 GRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAY  242 (376)
T ss_pred             CcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHH
Confidence            111222  55555554  4433322357788887765544222110 000000 0      00011222  333332222


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      .    .-..+.+++..++.++++++..+.|+.++
T Consensus       243 g----~~qL~~l~~~~~~r~~~~~~y~~~L~~~~  272 (376)
T TIGR02379       243 L----WAQLEQADRINQDRLATWQLYQDALKPLE  272 (376)
T ss_pred             H----HHHHHHhHHHHHHHHHHHHHHHHHhccCC
Confidence            2    12235568888888888888888887654

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.73  E-value=6.1e-16  Score=155.58  Aligned_cols=226  Identities=21%  Similarity=0.224  Sum_probs=152.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675          168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      +......++++++++++|.+ .     .  +++++|++++..+++++.     ++|   ++|+++.+.|+++..++...|
T Consensus        81 g~~~~~~~l~~~la~~~~~~-~-----~--i~~~~g~~~~~~~l~~~~-----~~g---d~V~~~~~~~~~~~~~~~~~g  144 (385)
T PRK05958         81 GNSPAHEALEEELAEWFGAE-R-----A--LLFSSGYAANLAVLTALA-----GKG---DLIVSDKLNHASLIDGARLSR  144 (385)
T ss_pred             CCcHHHHHHHHHHHHHhCCC-c-----E--EEECcHHHHHHHHHHHhC-----CCC---CEEEEeCccCHHHHHHHHhcC
Confidence            33455677888999999853 2     2  677788888887776653     367   899999999999999999999


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      ++++.+|.     .|++++++++++   ++.++++.++++++|.+.|+++|+++|++||+++++|++|+.+..+   ..|
T Consensus       145 ~~~~~~~~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~---~~g  216 (385)
T PRK05958        145 ARVRRYPH-----NDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLG---PQG  216 (385)
T ss_pred             CceEEeCC-----CCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccC---CCC
Confidence            99988875     388999999975   3677888888999999999999999999999999999999654332   011


Q ss_pred             CCCCC-CccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675          325 YPIPP-FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS  403 (438)
Q Consensus       325 ~~~p~-~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~  403 (438)
                      ...+. +.......+++..++||+ +++.| |+++.+ +++.+........+        ...++.+....+++.++++.
T Consensus       217 ~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G-g~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~aa~~aal~~  285 (385)
T PRK05958        217 RGLAAEAGLAGEPDVILVGTLGKA-LGSSG-AAVLGS-ETLIDYLINRARPF--------IFTTALPPAQAAAARAALRI  285 (385)
T ss_pred             CchHHhhCCCCCCceEEEEechhh-cccCC-cEEEcC-HHHHHHHHHhCccc--------eecCCCCHHHHHHHHHHHHH
Confidence            10001 111112235778899999 46666 665544 44332211100001        00111111224455566655


Q ss_pred             HcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          404 LGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       404 ~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +...  .+..++..++++++.+.|++.
T Consensus       286 ~~~~--~~~~~~~~~~~~~l~~~L~~~  310 (385)
T PRK05958        286 LRRE--PERRERLAALIARLRAGLRAL  310 (385)
T ss_pred             HhcC--HHHHHHHHHHHHHHHHHHHHc
Confidence            4222  567788888999999999875

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.73  E-value=1.1e-15  Score=157.57  Aligned_cols=238  Identities=12%  Similarity=0.167  Sum_probs=164.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          163 LDIFQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      |....+..++.+.+.+++.+.+|    +++++    |  ++|+|+++++.+++.++.+     +|   |.|+++.+.|+.
T Consensus        82 Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~----I--iit~Ga~~al~~l~~~l~~-----pG---d~Vlv~~P~Y~~  147 (468)
T PLN02450         82 FQDYHGLPAFKNALAEFMSEIRGNKVTFDPNK----L--VLTAGATSANETLMFCLAE-----PG---DAFLLPTPYYPG  147 (468)
T ss_pred             CCCCCChHHHHHHHHHHHHHhhCCCCCcChHH----e--EEccChHHHHHHHHHHhCC-----CC---CEEEECCCCCCc
Confidence            33455667788888888887766    34554    6  8999999999999998763     77   899999999999


Q ss_pred             HHHHHh-hcCcEEEEeeCC--CCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          239 YDKAAQ-YFNIKLWRVPVD--KEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       239 ~~~a~~-~~Gi~v~~v~~~--~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      +...+. ..|++++.||++  +++.+|++++++++.+      +++++++++|+||||.+.+   +++|.++|+++|+++
T Consensus       148 ~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~i  227 (468)
T PLN02450        148 FDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHL  227 (468)
T ss_pred             hHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEE
Confidence            988888 589999999986  3678899999998864      6899999999999999977   567888899999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCCcc---------CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccC
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPFDF---------SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWS  376 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~~~---------~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~  376 (438)
                      ++|.+|+.+...   ...+ .+....         ....-..+..+..|.+. ++..+|+++..++.+.+..... ..+.
T Consensus       228 I~DE~Y~~~~f~---~~~~-~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~-~~~~  302 (468)
T PLN02450        228 ISDEIYSGTVFD---SPGF-VSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKM-SSFG  302 (468)
T ss_pred             EEEccccccccC---CCCc-ccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHH-hhcC
Confidence            999999865431   0000 000110         01122467778899853 6677999887655433321111 1100


Q ss_pred             CCccCCCCccCCCCCchHHHHHHHHHHHcH-----HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          377 GGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-----EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       377 g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                                 . ..  ...+.++...+..     ..+++..++..+..+.+.+.|+++ |+.
T Consensus       303 -----------~-~s--~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~  350 (468)
T PLN02450        303 -----------L-VS--SQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIK  350 (468)
T ss_pred             -----------C-CC--HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence                       0 00  1133333333432     235666777888888888888876 554

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.72  E-value=3.6e-16  Score=150.13  Aligned_cols=237  Identities=15%  Similarity=0.137  Sum_probs=176.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC---cCcH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA---HSAY  239 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~---h~s~  239 (438)
                      |.....+.++|..+++...+|||++..+       +-..+|+.||..+..++.+     +|   |.|+-.+..   |-+.
T Consensus        64 YgGce~VD~vE~laierak~LFga~~an-------VQPhSGs~AN~av~~All~-----pG---Dtimgm~l~~GGHltH  128 (413)
T COG0112          64 YGGCEYVDEVEELAIERAKKLFGAEYAN-------VQPHSGSQANQAVYLALLQ-----PG---DTIMGLDLSHGGHLTH  128 (413)
T ss_pred             cCCCeeHHHHHHHHHHHHHHHhCCCccc-------cCCCCchHHHHHHHHHHcC-----CC---CeEecccCCCCCcccC
Confidence            3445567888999999999999999877       6888999999999999884     88   888765554   3333


Q ss_pred             HHHHhhcC--cEEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccch
Q 013675          240 DKAAQYFN--IKLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       240 ~~a~~~~G--i~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      -.-....|  .+++..++|+ ++.+|.+++++.+.+ +|++|++-.  +.+-...|++++.++|++.|.++.+|.++=.+
T Consensus       129 g~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~--SaY~r~id~~~~reIad~VGA~L~~DmAHiaG  206 (413)
T COG0112         129 GSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGG--SAYSRPIDFKRFREIADEVGAYLMVDMAHVAG  206 (413)
T ss_pred             CCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECc--cccccccCHHHHHHHHHHhCceEEehHHHHHH
Confidence            32222334  3677778885 799999999998865 799887544  34556789999999999999999999998666


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh-cccccCCCccCCCCccCCCCCchH
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGGLYVSPTVAGSRPGGLI  394 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~-~~~~~~g~~~~~~~~~gsr~~~~i  394 (438)
                      ++.    .|.    +.--.+.+|+++.++||.+.||.| |+++++++++.+..-. ..|.          ..|...-..|
T Consensus       207 LVA----~G~----~p~P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVFPg----------~qggpl~Hvi  267 (413)
T COG0112         207 LIA----GGV----HPNPLPHADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVFPG----------LQGGPLMHVI  267 (413)
T ss_pred             HHh----ccc----CCCCCCccceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhcCCc----------cCCChHHHHH
Confidence            552    332    112223489999999999999987 8888887555443211 2222          2222223347


Q ss_pred             HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          395 AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       395 a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      |+...+++...+.++++..++..++|+.|++.|.+. |++++
T Consensus       268 AakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vv  308 (413)
T COG0112         268 AAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVV  308 (413)
T ss_pred             HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEe
Confidence            788888888888999999999999999999999885 77653

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.72  E-value=1.5e-15  Score=153.21  Aligned_cols=243  Identities=14%  Similarity=0.109  Sum_probs=167.2

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCC--CCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGN--KEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..|...++..++.+.+.+++.+..|.  +++ +    |  ++|+|+++++.+++.++.+     +|   |+|+++.++|+
T Consensus        62 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~----I--~it~Gs~~al~~~~~~l~~-----~g---d~Vlv~~P~y~  127 (388)
T PRK07366         62 HGYLLFHGTLDFREAAAQWYEQRFGLAVDPETE----V--LPLIGSQEGTAHLPLAVLN-----PG---DFALLLDPGYP  127 (388)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCe----E--EECCCcHHHHHHHHHHhCC-----CC---CEEEEcCCCCc
Confidence            34555567777888888888877775  444 3    6  7899999999999988763     67   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~  312 (438)
                      .+...++..|++++.+|+++  ++.+|++++++.+.++++++++++|+||||.+.+   +++|.++|++||+++++|.+|
T Consensus       128 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y  207 (388)
T PRK07366        128 SHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPY  207 (388)
T ss_pred             chHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecch
Confidence            99999999999999999975  4678999999888888999999999999999977   567788999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCC-ccCCC-CccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          313 GGFVLPFAKKLGYPIPPF-DFSVQ-GVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~-~~~~~-gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      +.+...  ....  .+.+ ..... ...++..|+.|.. ..+..+|+++. ++++.+........+..+          .
T Consensus       208 ~~~~~~--~~~~--~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~-~~~li~~l~~~~~~~~~~----------~  272 (388)
T PRK07366        208 VDLVFD--GEVE--PPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG-NAQLIQALRQVKAVVDFN----------Q  272 (388)
T ss_pred             hhcccC--CCCC--CCChhhCCCCcccEEEEeecccccCCcchhheehcC-CHHHHHHHHHHHhhcccC----------C
Confidence            866531  0000  1111 11111 1245677899995 35567998765 444443221111111100          0


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ......++.+++.. ..+.+++..+...+..+++.+.|+++ ++.
T Consensus       273 ~~~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~  315 (388)
T PRK07366        273 YRGILNGAIAALTG-PQATVQQTVQIFRQRRDAFINALHQI-GWP  315 (388)
T ss_pred             CHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            01111122233311 24556777788888888899998876 443

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.72  E-value=7.5e-16  Score=154.67  Aligned_cols=225  Identities=16%  Similarity=0.118  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ..+++.+++++.+|.+.      +  ++|+|||+|+.+++.++.    .++|   ++|+++.++|+++..++...|++++
T Consensus        32 ~~~~~e~~la~~~g~~~------~--v~~~sgt~al~~~l~~~~----~~~G---d~Viv~~~t~~~~~~~~~~~G~~~v   96 (375)
T PRK11706         32 FTRRCQQWLEQRFGSAK------V--LLTPSCTAALEMAALLLD----IQPG---DEVIMPSYTFVSTANAFVLRGAKIV   96 (375)
T ss_pred             HHHHHHHHHHHHhCCCe------E--EEECCHHHHHHHHHHHhC----CCCC---CEEEECCCCcHHHHHHHHHcCCEEE
Confidence            34555567888888752      4  899999999988877652    1367   8999999999999999999999999


Q ss_pred             EeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          252 RVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       252 ~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      .+++++ ++.+|+++++++++++|++|++++   ++|...|+++|.++|+++|+++++|++++.+..            +
T Consensus        97 ~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~------------~  161 (375)
T PRK11706         97 FVDIRPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKHNLFVVEDAAQGVMST------------Y  161 (375)
T ss_pred             EEecCCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHcCCEEEEECccccccc------------c
Confidence            999987 468999999999999999998775   489999999999999999999999999864321            1


Q ss_pred             ccCCCC--ccEEEeCCC--CCCCCCCCcEEEEEecccccccchhccc-ccCCCcc-------CCCCccCCC--CCchHHH
Q 013675          331 DFSVQG--VTSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLY-------VSPTVAGSR--PGGLIAG  396 (438)
Q Consensus       331 ~~~~~g--vdsis~s~h--K~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~~-------~~~~~~gsr--~~~~ia~  396 (438)
                      +.+..|  .|.-++|+|  |.+ ++...|+++++++++.+....... .+.....       ......|..  ...+.  
T Consensus       162 ~~~~~g~~~~~~~~Sf~~~K~l-~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  238 (375)
T PRK11706        162 KGRALGTIGHIGCFSFHETKNY-TAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQ--  238 (375)
T ss_pred             CCeeeecCcCEEEEeCCCCccc-cccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHH--
Confidence            111111  256666666  985 443346566766655432111110 0000000       000011222  22222  


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                        +++.....+.+++..++..++++++.+.|++++
T Consensus       239 --aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~  271 (375)
T PRK11706        239 --AAYLWAQLEAADRINQRRLALWQRYYDALAPLA  271 (375)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              222222235578888888999999999998876

>PRK09265 aminotransferase AlaT; Validated

Probab=99.72  E-value=1.8e-15  Score=153.55  Aligned_cols=181  Identities=15%  Similarity=0.133  Sum_probs=133.0

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHh--CCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALL--GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~--g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      ..|....+..++.+.+.+++....  +.++++    +  ++|+|+++++.+++.++.     ++|   ++|+++.++|+.
T Consensus        66 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~----i--~~t~G~~~~l~~~~~~~~-----~~g---d~Vlv~~p~y~~  131 (404)
T PRK09265         66 QGYSDSKGLFSARKAIMQYYQQKGIPDVDVDD----I--YIGNGVSELIVMAMQALL-----NNG---DEVLVPAPDYPL  131 (404)
T ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCCCCccc----E--EEeCChHHHHHHHHHHhC-----CCC---CEEEEeCCCCcC
Confidence            344444555556555555543321  556655    6  899999999999988875     367   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +..+++..|.+++.++++.  ++.+|++++++++++++++|++++|+||||.+.+   +++|.++|+++|+++++|++|+
T Consensus       132 ~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~  211 (404)
T PRK09265        132 WTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYD  211 (404)
T ss_pred             hHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhh
Confidence            9999999999999998864  5779999999999989999999999999999988   8899999999999999999997


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCcc-EEEeCCCCCC-CCCCCcEEEEEe
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVT-SISVDVHKYG-LAPKGTSVVLYR  360 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvd-sis~s~hK~~-~~p~g~g~l~~r  360 (438)
                      .+...     +...+++........ ++..+..|.. .....+|+++..
T Consensus       212 ~~~~~-----~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~  255 (404)
T PRK09265        212 KILYD-----GAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLS  255 (404)
T ss_pred             hccCC-----CCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEe
Confidence            65421     000111111111222 3445668984 344568998864

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.72  E-value=9.4e-16  Score=154.42  Aligned_cols=233  Identities=16%  Similarity=0.120  Sum_probs=156.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      +....+..++.+++.+++++++|.+. .       +++++|++++..++.++.     .+|   ++|+++.+.|+++...
T Consensus        70 ~~~~~g~~~l~~~l~~~l~~~~g~~~-~-------i~~~sG~~a~~~a~~~~~-----~~g---d~vi~~~~~~~~~~~~  133 (385)
T TIGR01825        70 VRTIAGTLRLHEELEEKLAKFKKTEA-A-------LVFQSGFNTNQGVLSALL-----RKG---DIVLSDELNHASIIDG  133 (385)
T ss_pred             cCcccCCcHHHHHHHHHHHHHhCCCc-E-------EEECcHHHHHHHHHHHhC-----CCC---CEEEEEccccHHHHHH
Confidence            44455667788899999999999643 2       344455888888888765     367   8999999999999988


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      +...|++++.++     .+|++++++.+.+    ++++|+.+++.+++|.+.|+++|.++|++||+++++|++|+.+..+
T Consensus       134 ~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~  208 (385)
T TIGR01825       134 LRLTKATKKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMG  208 (385)
T ss_pred             HHhcCCceEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcC
Confidence            888888877664     4688888887764    6889999999999999999999999999999999999999755432


Q ss_pred             hhhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          319 FAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       319 f~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                         ..|.. .+.++.. .++|++..+++|++ ++.| |+++.+ +++.+........|..        .+..+....+++
T Consensus       209 ---~~~~~~~~~~~~~-~~~~i~~~s~sK~~-~~~g-G~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~  273 (385)
T TIGR01825       209 ---EAGRGTVHHFGLE-DKVDIQVGTLSKAI-GVVG-GYAAGH-KELIEYLKNRARPFLF--------STAQPPAVVAAL  273 (385)
T ss_pred             ---CCCCccHhhcCCC-cCCcEEEEeccHHh-hcCC-CEEecC-HHHHHHHHHhCccccc--------cCCCCHHHHHHH
Confidence               01100 1112222 46789999999995 5544 665543 3333221111011110        001111223455


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .++++.+..  ..+..++..++++++.+.|+++ |++
T Consensus       274 ~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~  307 (385)
T TIGR01825       274 AAAVDELQR--SPELMERLWDNTRFFKAGLGKL-GYD  307 (385)
T ss_pred             HHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            555544322  2345667778889999999875 443

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.71  E-value=4.1e-16  Score=155.71  Aligned_cols=216  Identities=19%  Similarity=0.201  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      .++++.+++++|.++++    +  ++ |+|+++++..+++++.     ++|   ++|+++.+.|+.+...++..|++++.
T Consensus        72 ~~lr~~ia~~~~~~~~~----i--~~~~~Ga~~~i~~~~~~~~-----~~g---d~vlv~~p~y~~~~~~~~~~g~~~~~  137 (361)
T PRK00950         72 PELREALSKYTGVPVEN----I--IVGGDGMDEVIDTLMRTFI-----DPG---DEVIIPTPTFSYYEISAKAHGAKPVY  137 (361)
T ss_pred             HHHHHHHHHHhCCCHHH----E--EEeCCCHHHHHHHHHHHhc-----CCC---CEEEEcCCChHHHHHHHHHcCCEEEE
Confidence            45666788888988765    5  66 6788888888877764     267   89999999999998899999999999


Q ss_pred             eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      +|.+.++.+|+++++++++++++++++++|+||||.+.|.+++.++|+++|+++++|++|+.+.-       ...+++..
T Consensus       138 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~-------~~~~~~~~  210 (361)
T PRK00950        138 AKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAE-------YDYTPLAL  210 (361)
T ss_pred             eecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCc-------cchHHHHH
Confidence            99877889999999999988899999999999999999999999999999999999999976531       00111110


Q ss_pred             CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HHH
Q 013675          333 SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EGY  409 (438)
Q Consensus       333 ~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g~  409 (438)
                      .. .-.++..+..|. ++.+|  +|+++..+ ++..........|.             ..  ..++.++...+.. +.+
T Consensus       211 ~~-~~vi~~~S~SK~-~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~-------------~~--~~~~~~a~~~l~~~~~~  272 (361)
T PRK00950        211 EY-DNLIIGRTFSKV-FGLAGLRIGYGFVPE-WLIDYYMRAKTPFS-------------LT--RLSQAAAIAALSDKEYI  272 (361)
T ss_pred             hc-CCEEEEEeehHh-hcCchhhcchhcCCH-HHHHHHHHhcCCCC-------------CC--HHHHHHHHHHhcCHHHH
Confidence            11 123566688898 45444  78876543 33322111111110             01  1133333333432 345


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 013675          410 LENTKAIMEVSESIQKGLV  428 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~  428 (438)
                      ++..++..+..+++.+.|+
T Consensus       273 ~~~~~~~~~~r~~l~~~l~  291 (361)
T PRK00950        273 EKSIEHGIKSREYLYNELP  291 (361)
T ss_pred             HHHHHHHHHHHHHHHhhcC
Confidence            6666777777777777664

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.71  E-value=6e-16  Score=154.46  Aligned_cols=219  Identities=17%  Similarity=0.138  Sum_probs=154.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.++++++.++++    +  ++|+|+++++..++.++.     .+|   ++|+++.++|+.+...+...|++++.+|
T Consensus        68 ~lr~~ia~~~~~~~~~----i--~~t~G~~~~l~~~~~~~~-----~~g---d~v~~~~p~y~~~~~~~~~~g~~~~~~~  133 (359)
T PRK03158         68 ELRTKVAKHLGVDEEQ----L--LFGAGLDEVIQMISRALL-----NPG---TNTVMAEPTFSQYRHNAIIEGAEVREVP  133 (359)
T ss_pred             HHHHHHHHHhCCCHHH----E--EECCCHHHHHHHHHHHHh-----CCC---CEEEEcCCCHHHHHHHHHHcCCeEEEEe
Confidence            4556677788887765    6  899999999998888775     267   8999999999999999999999999999


Q ss_pred             CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      ++ ++.+|+++++++++++++++++++|+||||.+.|.++|.++++.  +|+++++|++|..+...  .  .. .+.+..
T Consensus       134 ~~-~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~--~--~~-~~~~~~  207 (359)
T PRK03158        134 LK-DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTA--E--DY-PDTLPL  207 (359)
T ss_pred             cC-CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCC--c--cc-ccHHHH
Confidence            97 67899999999999899999999999999999999999999887  59999999999765431  0  00 000010


Q ss_pred             -CCCCccEEEeCCCCCCCCC--CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHH
Q 013675          333 -SVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEG  408 (438)
Q Consensus       333 -~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g  408 (438)
                       ...+-.++..++.|. ++.  ..+|+++.. +++.+........|.             .  ...++.++...+. .+.
T Consensus       208 ~~~~~~vi~~~S~SK~-~g~~GlRiG~~v~~-~~~~~~~~~~~~~~~-------------~--~~~~q~~~~~~l~~~~~  270 (359)
T PRK03158        208 LEKYENLIVLRTFSKA-YGLAALRVGYGIAS-EELIEKLNIARPPFN-------------T--TRIAQYAAIAALEDQAF  270 (359)
T ss_pred             HHhcCCEEEEEechHh-hcCcchhhehhcCC-HHHHHHHHHhcCCCC-------------C--CHHHHHHHHHHhcCHHH
Confidence             112235777788998 454  446987654 333322111111110             1  1123444444443 234


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 013675          409 YLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .++..+...+..+++.+.|++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~l~~~  292 (359)
T PRK03158        271 LKECVEKNAEGLEQYYAFCKEY  292 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC
Confidence            5555666677777888888765

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.71  E-value=3.7e-15  Score=154.36  Aligned_cols=189  Identities=17%  Similarity=0.227  Sum_probs=140.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          163 LDIFQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      +....|..++.+.+.+++.+.+|    .++++    |  ++|+|+++++.+++.++.+     +|   |.|+++.+.|+.
T Consensus        90 y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~----I--vit~Ga~~al~~l~~~l~~-----pG---D~Vlv~~P~Y~~  155 (496)
T PLN02376         90 FQDYHGLKKFRQAIAHFMGKARGGKVTFDPER----V--VMSGGATGANETIMFCLAD-----PG---DVFLIPSPYYAA  155 (496)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhCCCCcCChhh----E--EEccchHHHHHHHHHHhCC-----CC---CEEEECCCCccc
Confidence            34456777888888888888877    56665    7  8999999999999998874     78   999999999999


Q ss_pred             HHHHHh-hcCcEEEEeeCCC--CCccCHHHHHHhhc------cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          239 YDKAAQ-YFNIKLWRVPVDK--EFRADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       239 ~~~a~~-~~Gi~v~~v~~~~--~~~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      +...+. ..|++++.||++.  ++.+|++++++++.      .++++|++++|+||||.+.+   +++|.++|+++|+++
T Consensus       156 ~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~l  235 (496)
T PLN02376        156 FDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHL  235 (496)
T ss_pred             hHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            999887 5799999999963  67899999987642      36889999999999999987   567888899999999


Q ss_pred             EEeccccchhhh---hhhhcCCCCCCCccC--CCCccEEEeCCCCCC-CCCCCcEEEEEecccccc
Q 013675          307 HVDLCLGGFVLP---FAKKLGYPIPPFDFS--VQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRK  366 (438)
Q Consensus       307 hVD~a~gg~~~p---f~~~~g~~~p~~~~~--~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~  366 (438)
                      ++|++|+.+...   |..-... .+..+..  ....-.+..+++|.+ ..+..+|+++..++.+..
T Consensus       236 I~DEiY~~~~f~~~~~~si~~l-~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~  300 (496)
T PLN02376        236 VVDEIYAATVFAGGDFVSVAEV-VNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVS  300 (496)
T ss_pred             EEEcCccccccCCCCcccHHHh-hccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHH
Confidence            999999876431   1000000 0000110  011224467999985 355779998876555443

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.71  E-value=1.4e-15  Score=153.74  Aligned_cols=252  Identities=17%  Similarity=0.171  Sum_probs=167.2

Q ss_pred             HHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC----CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc
Q 013675          147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR  222 (438)
Q Consensus       147 ~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~----~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~  222 (438)
                      .+.+++..... ....|....+..++.+.+.+++.+.+|.+    +++   ++  ++|+|+++++.+++.++.+     +
T Consensus        45 ~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~---~i--~it~Ga~~al~~~~~~l~~-----~  113 (393)
T TIGR03538        45 FVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPER---HV--LPVNGTREALFAFAQAVIN-----P  113 (393)
T ss_pred             HHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCc---eE--EECCCcHHHHHHHHHHHcC-----C
Confidence            34444443332 23345445666778888888888877654    321   25  8899999999999998763     6


Q ss_pred             CCCCCe--EEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHH
Q 013675          223 GITRPE--MIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQEL  295 (438)
Q Consensus       223 G~~~~~--Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I  295 (438)
                      |   ++  |+++.+.|+.+...++..|++++.+|+++  ++.+|++++++++.++++++++++|+||||.+.+   +++|
T Consensus       114 g---d~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l  190 (393)
T TIGR03538       114 G---QAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKL  190 (393)
T ss_pred             C---CcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHH
Confidence            6   54  99999999999999999999999999964  4678999999999889999999999999999977   7888


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC-C-ccC-----CCCccEEEeCCCC-CCCCCCCcEEEEEeccccccc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP-F-DFS-----VQGVTSISVDVHK-YGLAPKGTSVVLYRNREIRKH  367 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~-~-~~~-----~~gvdsis~s~hK-~~~~p~g~g~l~~r~~~~~~~  367 (438)
                      .++|++||+++++|.+|..+...   . +.+.++ + ...     ...-.++..|..| ++..+..+|+++.. +++...
T Consensus       191 ~~~a~~~~~~ii~De~Y~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~-~~l~~~  265 (393)
T TIGR03538       191 IELADQYGFIIASDECYSELYFD---E-GNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGD-AEILKA  265 (393)
T ss_pred             HHHHHHCCEEEEECcchhhcccC---C-CCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecC-HHHHHH
Confidence            99999999999999999755421   0 000000 0 000     0112367788999 56677789997654 333322


Q ss_pred             chhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       368 ~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...... +.          +....  ...+.+++..+. .+.+++..+...+..+.+.+.|++.
T Consensus       266 ~~~~~~-~~----------~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~  316 (393)
T TIGR03538       266 FLRYRT-YH----------GCAMP--IPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV  316 (393)
T ss_pred             HHHHHH-hh----------ccCcC--HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111110 00          00001  113333333332 3345566666777777787777653

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.71  E-value=3.1e-15  Score=151.77  Aligned_cols=241  Identities=15%  Similarity=0.150  Sum_probs=163.2

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ...|...++...+.+.+.+++.+.+|.+  +++   ++  ++|+|+++++.+++.++.+     +|   |.|+++.++|+
T Consensus        64 ~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~---~I--~it~G~~~al~~~~~~l~~-----~g---d~Vlv~~P~y~  130 (403)
T PRK08636         64 THGYSVSKGIYKLRLAICNWYKRKYNVDLDPET---EV--VATMGSKEGYVHLVQAITN-----PG---DVAIVPDPAYP  130 (403)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---eE--EECCChHHHHHHHHHHhCC-----CC---CEEEEcCCCCc
Confidence            3445556777888888899998887854  331   26  8999999999999998763     77   99999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCC--CCCccCHHHH----HHhhc---cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCe
Q 013675          238 AYDKAAQYFNIKLWRVPVD--KEFRADVKAI----KKYIN---RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTC  305 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~--~~~~~d~~~L----e~~I~---~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~  305 (438)
                      .+..+++..|++++.+|++  +++.+|++++    +++++   .+++++++++|+||||.+.+   +++|.++|++|+++
T Consensus       131 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~  210 (403)
T PRK08636        131 IHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFY  210 (403)
T ss_pred             chHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcE
Confidence            9999999999999999985  3578998754    56554   46899999999999999977   57888899999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCC
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVS  382 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~  382 (438)
                      +++|.+|+.+...     +...+++. . ......+.+.++.|.. .....+|+++. ++++...... ...+...  . 
T Consensus       211 II~De~Y~~l~~~-----~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~-~~~li~~~~~-~~~~~~~--~-  280 (403)
T PRK08636        211 IISDIAYADITFD-----GYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVG-NKKLVGALKK-IKSWLDY--G-  280 (403)
T ss_pred             EEEeccchhhccC-----CCCCCChhcCCCccccEEEEEecccccCCccceeeeeeC-CHHHHHHHHH-HHHHhcc--c-
Confidence            9999999865431     11011111 1 1112345567899995 45567999765 4444332111 1111000  0 


Q ss_pred             CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          383 PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       383 ~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                          .+.+ ...++. .++. -..+.+++..+...+..+.+.+.|++.
T Consensus       281 ----~~~~-~q~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (403)
T PRK08636        281 ----MFTP-IQVAAT-IALD-GDQSCVEEIRETYRKRRDVLIESFANA  321 (403)
T ss_pred             ----CChH-HHHHHH-HHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence                0001 111111 2222 124456666777778888888888775

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.71  E-value=4.1e-16  Score=155.97  Aligned_cols=218  Identities=17%  Similarity=0.122  Sum_probs=155.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YD  240 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~  240 (438)
                      ..|...++|+    .++++.|.+.      .  +.+++|+.|+.+++.++.     ++|   |+|+++...|..    +.
T Consensus        62 ~~P~~~~lE~----~la~leg~~~------a--v~~sSG~aAi~~al~all-----~~G---D~Vl~~~~~yg~t~~~~~  121 (384)
T PRK06434         62 GNPTVQAFEE----KYAVLENAEH------A--LSFSSGMGAITSAILSLI-----KKG---KRILSISDLYGQTFYFFN  121 (384)
T ss_pred             CChhHHHHHH----HHHHHhCCCc------E--EEeCCHHHHHHHHHHHHh-----CCC---CEEEEecCccchHHHHHH
Confidence            4566666666    4888888763      2  789999999999998864     378   999998764333    34


Q ss_pred             HHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ..+..+|++++.+++++...++       +++ +|++|++.+++||++.+.|+++|+++|++++  ++||++++....  
T Consensus       122 ~~~~~~Gi~v~fvd~~~~~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~--  190 (384)
T PRK06434        122 KVLKTLGIHVDYIDTDRLNSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYN--  190 (384)
T ss_pred             HHHHhcCcEEEEECCCChhhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCccc--
Confidence            6777889999999986422222       333 6899999999999999999999999999998  567999764322  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                             ..++   ..|+|+++.|.||++.++.+  .|+++.+++++.+........           .|.....  ..+
T Consensus       191 -------~~pl---~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~-----------~G~~~~~--~~A  247 (384)
T PRK06434        191 -------QNPL---DLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKT-----------LGSNPDP--IQA  247 (384)
T ss_pred             -------CCch---hcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHh-----------cCCCCCH--HHH
Confidence                   1122   35799999999999777665  576666665543322111000           1111111  144


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      |..+  .|.+.+..++++..++++.+.+.|+++|.++-++|
T Consensus       248 ~l~~--~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~y  286 (384)
T PRK06434        248 YLAL--RGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYY  286 (384)
T ss_pred             HHHH--hCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence            4444  56688899999999999999999999998876554

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.71  E-value=4.4e-16  Score=155.00  Aligned_cols=220  Identities=16%  Similarity=0.149  Sum_probs=156.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.++++++.++++    +  ++|+|+++++.++++++.+     +|   |+|+++.+.|+.+...++.+|++++.+|
T Consensus        64 ~lr~aia~~~~~~~~~----I--~it~G~~~al~~~~~~l~~-----~g---d~vlv~~P~y~~~~~~~~~~g~~~~~v~  129 (353)
T PRK05387         64 ALRQAIAAYYGLDPEQ----V--FVGNGSDEVLAHAFLAFFN-----HD---RPLLFPDITYSFYPVYAGLYGIPYEEIP  129 (353)
T ss_pred             HHHHHHHHHhCCCHHH----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEEeCCCHHHHHHHHHHcCCEEEEee
Confidence            6677788888988775    6  9999999999999998863     77   8999999999999999999999999999


Q ss_pred             CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc-CCeEEEeccccchhhhhhhhcCCCCCCCccC
Q 013675          255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH-GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS  333 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~-~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~  333 (438)
                      +++++.+|++++++    +++++++++|+||||.+.|.+++.++++.+ ++++++|++|..+.-       ....+.- .
T Consensus       130 ~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~-------~~~~~~~-~  197 (353)
T PRK05387        130 LDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGG-------ESAIPLI-D  197 (353)
T ss_pred             cCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCC-------cchHHHH-h
Confidence            98888999999974    457889999999999999999999999886 999999999864321       0000110 1


Q ss_pred             CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHHHH
Q 013675          334 VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLE  411 (438)
Q Consensus       334 ~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~~~  411 (438)
                      ...-+++..+++|... .+..+|+++. ++++.+........+.         ..+   ....+++++...+. .+.+++
T Consensus       198 ~~~~~i~~~S~SK~~~~~GlR~G~~~~-~~~~~~~l~~~~~~~~---------~~~---~~~~~q~~~~~~l~~~~~~~~  264 (353)
T PRK05387        198 RYPNLLVVQTFSKSRSLAGLRVGFAIG-HPELIEALNRVKNSFN---------SYP---LDRLAQAGAIAAIEDEAYFEE  264 (353)
T ss_pred             hCCCEEEEEehhHhhcchhhhceeeec-CHHHHHHHHHhhccCC---------CCC---cCHHHHHHHHHHhcCHHHHHH
Confidence            1123578889999843 3345898765 3444332111110000         000   01113333333332 345677


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCcc
Q 013675          412 NTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       412 ~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..++..++++++.+.|+++ +++
T Consensus       265 ~~~~~~~~~~~l~~~L~~~-g~~  286 (353)
T PRK05387        265 TRAKVIATRERLVEELEAL-GFE  286 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCe
Confidence            7888888899999999876 544

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.71  E-value=1e-15  Score=152.30  Aligned_cols=223  Identities=19%  Similarity=0.167  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      ....++++.+++++|.+. .       +++++|++++..++.++.     ++|   ++|+++.+.|+++...++..|+++
T Consensus        61 ~~~~~l~~~la~~~~~~~-~-------i~~~~G~~~~~~~l~~~~-----~~g---d~v~~~~~~~~~~~~~~~~~g~~~  124 (360)
T TIGR00858        61 PLHEELEEELAEWKGTEA-A-------LLFSSGYLANVGVISALV-----GKG---DLILSDALNHASLIDGCRLSGARV  124 (360)
T ss_pred             HHHHHHHHHHHHHhCCCC-E-------EEECchHHHHHHHHHHhC-----CCC---CEEEEEccccHHHHHHHHhcCCce
Confidence            455667788888888542 2       455566788777766654     367   899999999999999999999999


Q ss_pred             EEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      +.++.     +|++++++++++    +++++++.++++++|.+.|+++|.++|+++|+++++|++|+.+..+.   .+..
T Consensus       125 ~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~  196 (360)
T TIGR00858       125 RRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGE---DGRG  196 (360)
T ss_pred             EEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCC---CCCc
Confidence            88874     589999999874    47899999999999999999999999999999999999997443321   0000


Q ss_pred             -CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          327 -IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       327 -~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                       .+.++....+.+++..+++|+ +++.| |+++.+ +++.+........|.        ..++.+...++++.++++.+.
T Consensus       197 ~~~~~~~~~~~~~i~i~s~sK~-~~~~g-G~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~al~~~~  265 (360)
T TIGR00858       197 TLEHFGLKPEPVDIQVGTLSKA-LGSYG-AYVAGS-QALIDYLINRARTLI--------FSTALPPAVAAAALAALELIQ  265 (360)
T ss_pred             hHHhcCCCccCCcEEEEechhh-hhccC-cEEEcC-HHHHHHHHHhCccce--------ecCCCCHHHHHHHHHHHHHHh
Confidence             001122234678999999999 56766 776554 333322111111110        011111122345555665432


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                        ..++..++..++.+++.+.|+++
T Consensus       266 --~~~~~~~~~~~~~~~l~~~L~~~  288 (360)
T TIGR00858       266 --EEPWRREKLLALIARLRAGLEAL  288 (360)
T ss_pred             --hCHHHHHHHHHHHHHHHHHHHHc
Confidence              23566788899999999999876

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.71  E-value=5.2e-16  Score=155.69  Aligned_cols=224  Identities=17%  Similarity=0.156  Sum_probs=158.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++++|+++++    +  ++|+|+++++.+++.++.     ++|   ++|+++.++|+.+...++..|++++.+|
T Consensus        75 ~lr~~ia~~~~~~~~~----i--~~t~G~~~~l~~~~~~~~-----~~g---d~vli~~P~y~~~~~~~~~~g~~~~~v~  140 (371)
T PRK05166         75 ALREAIAARTGVPADR----I--ILGNGSEDLIAVICRAVL-----RPG---DRVVTLYPSFPLHEDYPTMMGARVERVT  140 (371)
T ss_pred             HHHHHHHHHhCcCHHH----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEEcCCChHHHHHHHHHcCCeEEEee
Confidence            4666788888987765    6  899999999998888764     367   8999999999999999999999999999


Q ss_pred             CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCCCC-Cc
Q 013675          255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIPP-FD  331 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~p~-~~  331 (438)
                      +++++.+|+++++++++++|+++++++|+||||.+.|.+++.++++.  .++++++|++|+.+..      +...+. +.
T Consensus       141 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~------~~~~~~~~~  214 (371)
T PRK05166        141 VTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAA------GDDYPSALT  214 (371)
T ss_pred             cCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcC------CcCcccHHH
Confidence            98888999999999999899999999999999999998777777664  4789999999976541      000111 11


Q ss_pred             c-CCCC-ccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cHH
Q 013675          332 F-SVQG-VTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQE  407 (438)
Q Consensus       332 ~-~~~g-vdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~~  407 (438)
                      . ...+ -.++..++.|.+. .+..+|+++..++++.+........|.             ..  ..+..+++..+ ..+
T Consensus       215 ~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~-------------~~--~~~q~~~~~~l~~~~  279 (371)
T PRK05166        215 LLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPFN-------------VN--GAAQAAALAALDDEE  279 (371)
T ss_pred             HHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCCC-------------CC--HHHHHHHHHHhcCHH
Confidence            1 1111 2367778899943 556689877766655433211111111             01  11222223222 234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+++..+...+..+++.+.|++. +++
T Consensus       280 ~~~~~~~~~~~~r~~l~~~L~~~-g~~  305 (371)
T PRK05166        280 HLAKGVALALAERERLKKELAEM-GYR  305 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-cCe
Confidence            56666777788888899999876 443

>PRK03321 putative aminotransferase; Provisional

Probab=99.71  E-value=4.1e-16  Score=155.24  Aligned_cols=222  Identities=18%  Similarity=0.154  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.++++    +  ++|+|+++++..++.+..     ++|   ++|+++.+.+..+..+++..|++++.+
T Consensus        60 ~~lr~~ia~~~~~~~~~----I--~~~~G~~~~l~~~~~~~~-----~~g---d~Vli~~p~y~~~~~~~~~~g~~~~~v  125 (352)
T PRK03321         60 VELRAALAEHLGVPPEH----V--AVGCGSVALCQQLVQATA-----GPG---DEVIFAWRSFEAYPILVQVAGATPVQV  125 (352)
T ss_pred             HHHHHHHHHHhCcCHHH----E--EECCCHHHHHHHHHHHhc-----CCC---CEEEeCCCCHHHHHHHHHHcCCEEEEc
Confidence            35556788888887765    6  889999998888877654     367   899999999888888899999999999


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      |+++++.+|++++++++++++++|++++|+||||.+.|.++|.++|++  +++++++|++|+.+...     +...+.+.
T Consensus       126 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~-----~~~~~~~~  200 (352)
T PRK03321        126 PLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRD-----DDVPDGLE  200 (352)
T ss_pred             cCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccC-----cCCCcHHH
Confidence            998778899999999999899999999999999999999999999987  59999999999765431     00001111


Q ss_pred             cCCC-CccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cHHH
Q 013675          332 FSVQ-GVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQEG  408 (438)
Q Consensus       332 ~~~~-gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~~g  408 (438)
                      .... .-.+++.+..|.+. .+..+|+++.+ +++.+........|.             ..  ..++.+++..+ ..+.
T Consensus       201 ~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~-~~~~~~~~~~~~~~~-------------~s--~~~q~~a~~~l~~~~~  264 (352)
T PRK03321        201 LVRDHPNVVVLRTFSKAYGLAGLRVGYAVGH-PEVIAALRKVAVPFS-------------VN--SLAQAAAIASLAAEDE  264 (352)
T ss_pred             HHhhCCCEEEEecchHHhhhHHHhhhhhcCC-HHHHHHHHHhcCCCC-------------CC--HHHHHHHHHHhcCHHH
Confidence            1111 12355667889943 23348887764 444332211111111             01  11333332222 2344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 013675          409 YLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +.+..++..+..+++.+.|++.
T Consensus       265 ~~~~~~~~~~~r~~~~~~L~~~  286 (352)
T PRK03321        265 LLERVDAVVAERDRVRAALRAA  286 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC
Confidence            5555666666667788888765

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.71  E-value=8.6e-16  Score=153.79  Aligned_cols=223  Identities=18%  Similarity=0.144  Sum_probs=157.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++++|.++++    +  ++|+|+++++..++.++.     ++|   ++|+++.+.|..+...++..|++++.+|
T Consensus        71 ~lr~~ia~~~~~~~~~----i--~~t~G~~~~l~~~~~~l~-----~~g---d~vl~~~p~y~~~~~~~~~~g~~~~~~~  136 (367)
T PRK02731         71 ELKAALAEKFGVDPER----I--ILGNGSDEILELLARAYL-----GPG---DEVIYSEHGFAVYPIAAQAVGAKPVEVP  136 (367)
T ss_pred             HHHHHHHHHhCcCHHH----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEEecCCHHHHHHHHHHcCCeEEEec
Confidence            5666788888987765    6  899999999888877764     367   8999999999888888899999999999


Q ss_pred             CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      ++ ++.+|++++++++++++++|++++|+||||.+.|.+++.++++.+  |+++++|++|..+..-   . .. .+.++.
T Consensus       137 ~~-~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~---~-~~-~~~~~~  210 (367)
T PRK02731        137 AK-DYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRR---K-DY-EDGLEL  210 (367)
T ss_pred             cc-CCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccC---c-Cc-ccHHHH
Confidence            84 578999999999998999999999999999999999999999875  8999999998754420   0 00 001111


Q ss_pred             CCC-CccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HHH
Q 013675          333 SVQ-GVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EGY  409 (438)
Q Consensus       333 ~~~-gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g~  409 (438)
                      ... .-.+++.+..|.+ ..+..+|+++.++ ++.+........|.          .     ...+++++...+.. +.+
T Consensus       211 ~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~-~~~~~l~~~~~~~~----------~-----~~~~~~~a~~~l~~~~~~  274 (367)
T PRK02731        211 VAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP-EIIDALNRVRQPFN----------V-----NSLALAAAVAALDDDAFV  274 (367)
T ss_pred             HhhcCCEEEEeeehHhhcCcccceeeeeCCH-HHHHHHHHccCCCC----------C-----CHHHHHHHHHHhCCHHHH
Confidence            111 1245566778973 2344579977654 33322111111110          0     12245555555543 446


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          410 LENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ++..++..++.+++.+.|++. |+.
T Consensus       275 ~~~~~~~~~~~~~l~~~L~~~-g~~  298 (367)
T PRK02731        275 EKSRALNAEGMAWLTEFLAEL-GLE  298 (367)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            777778888888899998876 543

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.70  E-value=2.6e-16  Score=150.24  Aligned_cols=228  Identities=20%  Similarity=0.252  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH--HHhhcC-c
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK--AAQYFN-I  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~--a~~~~G-i  248 (438)
                      ..+++.+.+++++|. ..     +  +|+.+||+||.+++.+...     +|   ..||+...+|...++  +...++ +
T Consensus        36 ~~~~~e~~~ae~~g~-~a-----~--~Fv~sGT~aN~lal~~~~~-----~~---~~vi~~~~aHi~~~E~Ga~~~~~~~   99 (342)
T COG2008          36 TTNALEQRIAELFGK-EA-----A--LFVPSGTQANQLALAAHCQ-----PG---ESVICHETAHIYTDECGAPEFFGGG   99 (342)
T ss_pred             HHHHHHHHHHHHhCC-ce-----E--EEecCccHHHHHHHHHhcC-----CC---CeEEEeccccceecccCcHHHHcCC
Confidence            344444579999998 32     4  8999999999999999873     67   789999999988775  344554 3


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccC-------cEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRN-------TVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~-------t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      ..+.+...++|.++++++++.|..+       +.++..+.. |..|++.|   +++|.++||++|++||+||+--+-.++
T Consensus       100 ~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~-te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~v  178 (342)
T COG2008         100 QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTA-TEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALV  178 (342)
T ss_pred             ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeecc-CCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHH
Confidence            3333333469999999999988642       344444444 47899977   567888999999999999996444443


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc-chhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~-~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                      .   .|   |+..--..++|++++.+.|.|..|.| + +++-+.++.+. .+....  .|+.        -|-...+++.
T Consensus       179 a---lg---~~~~~~~~~~D~v~~~~tK~g~~~~g-A-iv~gn~~~~~~a~~~rK~--~Ggl--------~~k~r~laA~  240 (342)
T COG2008         179 A---LG---VALKTIKSYVDSVSFCLTKGGGAPVG-A-IVFGNRDFAKRARRWRKR--AGGL--------MRKARFLAAQ  240 (342)
T ss_pred             H---cC---CCHHHHHhhCCEEEEecccCCcceee-e-EEEcCHHHHHHHHHHHHH--hccc--------HhhhhHHHHH
Confidence            2   22   12222345789999999999877764 4 45555544332 221111  1221        2333345566


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      |...  +..+-+....++..++|++|++.+.+.||+++.
T Consensus       241 ~~~~--l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~  277 (342)
T COG2008         241 GLYA--LEDDVWRLAADHANAMAARLAEGLEAKPGVKLA  277 (342)
T ss_pred             HHHH--HhccHHHHHHHHHHHHHHHHHHhhhhcCCceec
Confidence            6554  555557777788888999999999988898764

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.70  E-value=2e-15  Score=154.05  Aligned_cols=230  Identities=16%  Similarity=0.077  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHH----HHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYM----RNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~----~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      ++.+.+++++|.+.      +  ++|+|||+|+.+++.++....    ..++|   ++||++..+|++...++...|+++
T Consensus        67 ~fe~~lA~~~g~~~------~--v~~~sGt~al~~aL~al~~~~~~~~~~~pG---d~VIv~~~t~~a~~~~v~~~G~~p  135 (438)
T PRK15407         67 AFEKKLAEFLGVRY------A--LLVNSGSSANLLAFSALTSPKLGDRALKPG---DEVITVAAGFPTTVNPIIQNGLVP  135 (438)
T ss_pred             HHHHHHHHHhCCCe------E--EEECCHHHHHHHHHHHHhhccccccCCCCC---CEEEECCCCcHHHHHHHHHcCCEE
Confidence            44556888888753      3  789999999999998874211    11245   899999999999999999999999


Q ss_pred             EEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          251 WRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       251 ~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      +.++++. ++.+|+++++++++++|++|+++++   +|...|+++|.++|+++|+++++|+|++-+...    -|.    
T Consensus       136 v~vdvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~----~g~----  204 (438)
T PRK15407        136 VFVDVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTY----DGR----  204 (438)
T ss_pred             EEEecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhc----CCe----
Confidence            9999984 8899999999999999999999885   788899999999999999999999998644331    011    


Q ss_pred             CccCCCCccEEEeC--CCCCCCCCCCcEEEEEecccccccchhcccccCCC---------------------c---cC--
Q 013675          330 FDFSVQGVTSISVD--VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG---------------------L---YV--  381 (438)
Q Consensus       330 ~~~~~~gvdsis~s--~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~---------------------~---~~--  381 (438)
                       .....| |..++|  ..|.+.++.| |+++++++++.+...... +|...                     .   +.  
T Consensus       205 -~~G~~g-d~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (438)
T PRK15407        205 -MTGTFG-DIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESFR-DWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHK  280 (438)
T ss_pred             -eeeccC-ceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHHH-HhCccccccccccccccccccccccccccccccc
Confidence             011112 444444  4465555444 888888877654321111 11000                     0   00  


Q ss_pred             -CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          382 -SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       382 -~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                       .....|....  +..+.+++.....+.+++..++..++++++.+.|+++++
T Consensus       281 ~~~~~~G~n~r--msel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~  330 (438)
T PRK15407        281 YTYSHLGYNLK--ITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLED  330 (438)
T ss_pred             ccccccccccC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence             0001121111  123445554445577899999999999999999988875

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.70  E-value=9.4e-16  Score=152.83  Aligned_cols=224  Identities=17%  Similarity=0.173  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.++++++.++++    +  ++|+|+++++..++.++.      +    +.|+++.+.|+.+..+++..|++++.+
T Consensus        57 ~~lr~~ia~~~~~~~~~----i--~it~Ga~~~l~~~~~~~~------~----~~v~i~~P~y~~~~~~~~~~g~~~~~~  120 (354)
T PRK06358         57 LELRKRIASFEQLDLEN----V--ILGNGATELIFNIVKVTK------P----KKVLILAPTFAEYERALKAFDAEIEYA  120 (354)
T ss_pred             HHHHHHHHHHhCCChhh----E--EECCCHHHHHHHHHHHhC------C----CcEEEecCChHHHHHHHHHcCCeeEEE
Confidence            35666778888988876    7  899999999999887641      2    479999999999999999999999999


Q ss_pred             eCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          254 PVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       254 ~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      |+++  ++.+| +++.+.+.++++++++++|+||||.+.+   +++|.++|+++++++++|++|..+...     +...+
T Consensus       121 ~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~-----~~~~~  194 (354)
T PRK06358        121 ELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEE-----NETIS  194 (354)
T ss_pred             eCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCC-----ccchh
Confidence            9974  46789 6776777778999999999999999987   778888899999999999999765431     00011


Q ss_pred             CCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          329 PFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       329 ~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                      .+.. ....-.++..|+.|... .+..+|+++..++.+..........|..               ...+.+++...+..
T Consensus       195 ~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~~~---------------~~~~q~~~~~~l~~  259 (354)
T PRK06358        195 MINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSI---------------NTFADLAGQTLLDD  259 (354)
T ss_pred             HHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCCcc---------------hHHHHHHHHHHhcc
Confidence            1111 11112367778899954 5667999877555443222111111111               12234444444433


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          407 E-GYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       407 ~-g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      . .+.+..+...+..+++.+.|++++++.
T Consensus       260 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~  288 (354)
T PRK06358        260 KEYIKKTIQWIKEEKDFLYNGLSEFKGIK  288 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            3 346777777888899999998887754

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.70  E-value=5.3e-16  Score=163.35  Aligned_cols=235  Identities=11%  Similarity=0.044  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH-HhhcCcEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-AQYFNIKLW  251 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a-~~~~Gi~v~  251 (438)
                      ..+..+..|++||++..-       .+|+|+|.+|..++.++..     +|   +.|+++..+|-|+..+ ..+.|++.+
T Consensus       176 i~eAq~~AA~~fgAd~ty-------FlvNGTS~gn~a~i~a~~~-----~G---d~VLvdRN~HKSv~hgaLiLsGa~PV  240 (720)
T PRK13578        176 AKDAQKHAAKVFNADKTY-------FVLNGTSASNKVVTNALLT-----PG---DLVLFDRNNHKSNHHGALIQAGATPV  240 (720)
T ss_pred             HHHHHHHHHHHhCCCceE-------EEeCChhHHHHHHHHHhcC-----CC---CEEEeecccHHHHHHHHHHHcCCeEE
Confidence            445556799999999863       7899999999999999873     78   9999999999999985 888899999


Q ss_pred             EeeCCC-----CCccCHHH-----HHHhhccC----------cEEEEEecCCCCCccccCHHHHHHH-HHHcCCeEEEec
Q 013675          252 RVPVDK-----EFRADVKA-----IKKYINRN----------TVLIVGSAPGFPHGIIDPIQELGEL-ALSHGTCLHVDL  310 (438)
Q Consensus       252 ~v~~~~-----~~~~d~~~-----Le~~I~~~----------t~~vv~~~~~~~tG~iddi~~I~~l-a~~~~i~lhVD~  310 (438)
                      +++...     -+.++.+.     ++++|.++          .+++++++||+ .|.+.|+++|+++ ++.++ ++|||+
T Consensus       241 Yl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDE  318 (720)
T PRK13578        241 YLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDS  318 (720)
T ss_pred             EeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeC
Confidence            997653     23456544     89888765          48999999988 8999999999998 68888 999999


Q ss_pred             cccchhhhhhhhcCCCCCCCccCCCCcc----EEEeCCCCCCCCCCCcEEEEEeccccc-------ccchhcccccCCCc
Q 013675          311 CLGGFVLPFAKKLGYPIPPFDFSVQGVT----SISVDVHKYGLAPKGTSVVLYRNREIR-------KHQFVAVTEWSGGL  379 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~~~~~~gvd----sis~s~hK~~~~p~g~g~l~~r~~~~~-------~~~~~~~~~~~g~~  379 (438)
                      |||+... |..... ..|+.. ...|+|    +++-|+||.+.+-..++++.+++..+.       ...+.....     
T Consensus       319 Ahgah~~-F~p~~~-~~p~~a-l~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~-----  390 (720)
T PRK13578        319 AWVGYEQ-FIPMMA-DCSPLL-LELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFM-----  390 (720)
T ss_pred             cchhhhc-cCcccc-cCChhh-hhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHH-----
Confidence            9987653 321100 022222 245778    999999999988888999988765322       011100000     


Q ss_pred             cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh-hcCCCccc
Q 013675          380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL-VLFPMFLP  435 (438)
Q Consensus       380 ~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L-~~~~g~~~  435 (438)
                         .....|.+..++|++-.+-+.+-.+.-++..++..+.+..+++.| +.++++++
T Consensus       391 ---m~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~  444 (720)
T PRK13578        391 ---LHASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRP  444 (720)
T ss_pred             ---HHcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence               001123334556666665554433223567777888888888888 66676654

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.70  E-value=1e-15  Score=152.79  Aligned_cols=220  Identities=18%  Similarity=0.154  Sum_probs=158.3

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~  244 (438)
                      ..|....+|+    .++++-|...        .+.+++|..|+..++.++..     +|   ++|+++...|....+.++
T Consensus        53 gnPt~~~le~----~la~Le~g~~--------a~~~~SGmaAi~~~l~~ll~-----~G---d~iv~~~~~Y~~t~~~~~  112 (386)
T PF01053_consen   53 GNPTVRALEQ----RLAALEGGED--------ALLFSSGMAAISAALLALLK-----PG---DHIVASDDLYGGTYRLLE  112 (386)
T ss_dssp             C-HHHHHHHH----HHHHHHT-SE--------EEEESSHHHHHHHHHHHHS------TT---BEEEEESSSSHHHHHHHH
T ss_pred             ccccHHHHHH----HHHHhhcccc--------eeeccchHHHHHHHHHhhcc-----cC---CceEecCCccCcchhhhh
Confidence            3455555555    5788888742        27889999999999988763     67   899999998877655554


Q ss_pred             ----hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC-CeEEEeccccchhhhh
Q 013675          245 ----YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG-TCLHVDLCLGGFVLPF  319 (438)
Q Consensus       245 ----~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~-i~lhVD~a~gg~~~pf  319 (438)
                          .+|+++..++.+     |+++++++++++|++|++..|+||+..+.||++|+++|+++| ++++||.+++..+.  
T Consensus       113 ~~l~~~gv~v~~~d~~-----d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~--  185 (386)
T PF01053_consen  113 ELLPRFGVEVTFVDPT-----DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN--  185 (386)
T ss_dssp             HCHHHTTSEEEEESTT-----SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT--
T ss_pred             hhhcccCcEEEEeCch-----hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee--
Confidence                459999999764     899999999999999999999999999999999999999998 99999999875432  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC---cEEEEEec-ccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRN-REIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g---~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                                ++....|+|++..|..||+ ++.+   .|+++.++ +++........ ...|.          -..  ..
T Consensus       186 ----------~~pL~~GaDivv~S~TKyl-~Ghsdv~~G~vv~~~~~~~~~~l~~~~-~~~G~----------~~~--p~  241 (386)
T PF01053_consen  186 ----------QNPLELGADIVVHSATKYL-SGHSDVMGGAVVVNGSSELYDRLREFR-RLLGA----------TLS--PF  241 (386)
T ss_dssp             ----------C-GGGGT-SEEEEETTTTT-TTSSSE-EEEEEESSHHHHHHHHHHHH-HHHT-----------B----HH
T ss_pred             ----------eccCcCCceEEEeeccccc-cCCcceeeEEEEECchhhhhhhhcchh-hhcCc----------cch--HH
Confidence                      2334458999999999995 4444   67777766 33322211111 11111          111  12


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPL  437 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l  437 (438)
                      .+|..+  .|.+.+.-+.++..++|+.+++.|++.|.++-+.
T Consensus       242 da~ll~--rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~  281 (386)
T PF01053_consen  242 DAWLLL--RGLRTLPLRMERQNENAEALAEFLEEHPKVKRVY  281 (386)
T ss_dssp             HHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred             HHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence            556555  4678889999999999999999999999886443

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK06855 aminotransferase; Validated

Probab=99.70  E-value=3.9e-15  Score=152.31  Aligned_cols=243  Identities=14%  Similarity=0.047  Sum_probs=162.1

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      ++|....+..++.+.+.+++.+..|.  ++++    |  ++|+|+++++.+++. +.     .+|   |+|+++.++|+.
T Consensus        67 ~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~----I--~it~G~~~al~~~~~-l~-----~~G---d~Vlv~~P~Y~~  131 (433)
T PRK06855         67 YGYCPTKGVLETREFLAELNNKRGGAQITPDD----I--IFFNGLGDAIAKIYG-LL-----RRE---ARVIGPSPAYST  131 (433)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhccCCCCCHhH----E--EEcCcHHHHHHHHHH-hc-----CCC---CeEEEeCCCCch
Confidence            45656677788888888888887665  4444    6  899999999988864 33     367   899999999998


Q ss_pred             HHHHH-hhcCcEEEEeeCCC--CCccCHHHHHHhhc--cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEec
Q 013675          239 YDKAA-QYFNIKLWRVPVDK--EFRADVKAIKKYIN--RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL  310 (438)
Q Consensus       239 ~~~a~-~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~--~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~  310 (438)
                      +..+. ...|++++.+|+++  ++.+|+++|++++.  ++++++++++|+||||.+.+   +++|.++|++||+++++|.
T Consensus       132 ~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De  211 (433)
T PRK06855        132 HSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDE  211 (433)
T ss_pred             HHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence            76543 35589999999874  46799999999996  45789999999999999987   5678888999999999999


Q ss_pred             cccchhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCCCC-CCCCcEEEEEec----ccccccchhcccccCCCccCCCC
Q 013675          311 CLGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKYGL-APKGTSVVLYRN----REIRKHQFVAVTEWSGGLYVSPT  384 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~----~~~~~~~~~~~~~~~g~~~~~~~  384 (438)
                      +|+.+...     +.+.+++ .....+-.++..|..|.+. .+..+|+++..+    +.+....-.......      ..
T Consensus       212 ~Y~~l~~~-----~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~------~~  280 (433)
T PRK06855        212 IYNNIVYN-----GKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKM------IE  280 (433)
T ss_pred             cccccccC-----CCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhc------cc
Confidence            99876431     1001111 1111122367788899963 556799988732    111110000000000      00


Q ss_pred             ccCCCCCchHHHHHHHHHHHc----HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          385 VAGSRPGGLIAGAWAALMSLG----QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       385 ~~gsr~~~~ia~~~aal~~~g----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      . +  +.  ...+.++...+.    .+.+++..+...+..+.+.+.|++++++.
T Consensus       281 ~-~--~~--~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~  329 (433)
T PRK06855        281 V-C--ST--TLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLK  329 (433)
T ss_pred             c-C--CC--hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence            0 0  00  113444444442    23456667777888888999998877654

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.69  E-value=2.4e-15  Score=153.87  Aligned_cols=231  Identities=10%  Similarity=-0.022  Sum_probs=155.9

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      ..+..++.+.+.+++....+ ++++    +  ++|+|+++++.+++.++.+     +|   |.|+++.++|+.+...++.
T Consensus       120 ~~g~~~lr~~ia~~~~~~~~-~~~~----I--iit~G~~~al~~~~~~l~~-----pg---d~Vlv~~P~y~~~~~~~~~  184 (431)
T PRK15481        120 APVSPELHAWAARWLRDDCP-VAFE----I--DLTSGAIDAIERLLCAHLL-----PG---DSVAVEDPCFLSSINMLRY  184 (431)
T ss_pred             cCCCHHHHHHHHHHHhhccC-CcCe----E--EEecCcHHHHHHHHHHhCC-----CC---CEEEEeCCCcHHHHHHHHH
Confidence            33444455555555443222 2233    6  8999999999999998763     77   8999999999999999999


Q ss_pred             cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEe-cCCCCCccccCHH---HHHHHHHHc-CCeEEEeccccchhhhhh
Q 013675          246 FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGS-APGFPHGIIDPIQ---ELGELALSH-GTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       246 ~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~-~~~~~tG~iddi~---~I~~la~~~-~i~lhVD~a~gg~~~pf~  320 (438)
                      +|++++.+|+++++ +|+++|++++++++++++++ +|+||||.+.+.+   +|.++|+++ ++++++|.+|+.+...  
T Consensus       185 ~g~~~~~v~~~~~g-~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~--  261 (431)
T PRK15481        185 AGFSASPVSVDAEG-MQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSS--  261 (431)
T ss_pred             cCCeEEeeccCCCC-CCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccC--
Confidence            99999999997654 89999999998888888876 9999999998875   999999999 9999999999866421  


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                         ++ .+.+... ..-.++..++.|....+..+|+++.. +++.............             .....++.++
T Consensus       262 ---~~-~~~~~~~-~~~vi~~~SfSK~~~~GlRiG~~i~~-~~~~~~~~~~~~~~~~-------------~~s~~~q~a~  322 (431)
T PRK15481        262 ---PY-HSVIPQT-TQRWALIRSVSKALGPDLRLAFVASD-SATSARLRLRLNSGTQ-------------WVSHLLQDLV  322 (431)
T ss_pred             ---CC-CCCCcCC-CCCEEEEeeeccccCCCceeEEEeCC-HHHHHHHHHHHhcccc-------------CCCHHHHHHH
Confidence               11 1112111 12347777889995544558886654 4333221111110000             0011234444


Q ss_pred             HHHHcH----HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          401 LMSLGQ----EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       401 l~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ...+..    +.+++..+...+..+.+.+.|++. +++
T Consensus       323 ~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~  359 (431)
T PRK15481        323 YACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIA  359 (431)
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            443422    224566777788888888888775 443

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.69  E-value=3.2e-15  Score=142.16  Aligned_cols=237  Identities=19%  Similarity=0.195  Sum_probs=164.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----H
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----Y  239 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~  239 (438)
                      -..|-...+|+    .++.|=|.-        .++.+++|..|+.+|+..+..     .|   |+|+.+..-|..    +
T Consensus        59 i~NPT~~vlE~----RiAaLEGG~--------aa~a~aSG~AA~~~ai~~la~-----aG---D~iVss~~LYGGT~~lf  118 (426)
T COG2873          59 IMNPTTDVLEE----RIAALEGGV--------AALAVASGQAAITYAILNLAG-----AG---DNIVSSSKLYGGTYNLF  118 (426)
T ss_pred             ccCchHHHHHH----HHHHhhcch--------hhhhhccchHHHHHHHHHhcc-----CC---CeeEeeccccCchHHHH
Confidence            34466666666    466665543        337889999999999998773     78   999988886644    5


Q ss_pred             HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ....+.+|++++.|+.+     |++.++++|++||++|++..-.||-+.+-|+++|+++||++|++++||...+..++  
T Consensus       119 ~~tl~~~Gi~v~fvd~~-----d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl--  191 (426)
T COG2873         119 SHTLKRLGIEVRFVDPD-----DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL--  191 (426)
T ss_pred             HHHHHhcCcEEEEeCCC-----CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee--
Confidence            56678889999999875     79999999999999999999999999999999999999999999999999876433  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEeccccc---ccchhc----ccccCCCccCCC-C-----
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIR---KHQFVA----VTEWSGGLYVSP-T-----  384 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~---~~~~~~----~~~~~g~~~~~~-~-----  384 (438)
                             +.|+   .-|+|+++-|..||. ++.|  +|.+++-.....   ...|..    .+.|.|-.|... .     
T Consensus       192 -------~rP~---~hGADIVvHS~TK~i-gGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~  260 (426)
T COG2873         192 -------CRPI---EHGADIVVHSATKYI-GGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFI  260 (426)
T ss_pred             -------cchh---hcCCCEEEEeecccc-cCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHH
Confidence                   2234   458999999999993 4433  444555332211   111110    111222211110 0     


Q ss_pred             ----ccCCC-CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          385 ----VAGSR-PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       385 ----~~gsr-~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                          ..+-| .|+.+...-+-+-..|.+-+.=+.++..++|..+++.|+++|.+.-+.|
T Consensus       261 ~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~Y  319 (426)
T COG2873         261 IKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNY  319 (426)
T ss_pred             HHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeec
Confidence                00111 1222222222233357888888999999999999999999998765443

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.69  E-value=1.4e-15  Score=150.82  Aligned_cols=237  Identities=19%  Similarity=0.218  Sum_probs=157.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC---cCcHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA---HSAYDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~---h~s~~~a  242 (438)
                      ...+.++|.-+++.++++||+++++   |.+-+-..+|+.|++.++.++.+     +|   |+|+..+..   |.+.-..
T Consensus        61 ~~~id~iE~la~~ra~~lF~~~~~~---w~anvqp~SGs~An~av~~aLl~-----pG---D~Im~l~l~~GGHlshg~~  129 (399)
T PF00464_consen   61 CEYIDEIEELAIERAKELFGAEPKE---WYANVQPHSGSQANLAVYMALLK-----PG---DTIMGLSLPHGGHLSHGSS  129 (399)
T ss_dssp             THHHHHHHHHHHHHHHHHHT-STTT---EEEE---SSHHHHHHHHHHHHT------TT----EEEEEEGGGT--GGGT-T
T ss_pred             cchhhHHHHHHHHHHHHHhCCCccc---ceEEeecCCchHHHHHHHHHHHh-----hc---CcEEecChhhccccccccc
Confidence            4557788999999999999999655   12224568999999999999884     78   888765543   5443333


Q ss_pred             Hhh-------cCcEEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675          243 AQY-------FNIKLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       243 ~~~-------~Gi~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g  313 (438)
                      ...       ...+.+..++|+ ++.+|.+++++.+.+ +|++|++..-++|  ...|++++.++|++.|+.+++|.++-
T Consensus       130 ~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~  207 (399)
T PF00464_consen  130 VNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIADEVGAYLMADISHI  207 (399)
T ss_dssp             TSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTT
T ss_pred             ccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHHhcCcEEEeccccc
Confidence            222       234788888984 899999999998875 7999988776654  46789999999999999999999987


Q ss_pred             chhhhhhhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEe-------------cccccccchhcccccCCCc
Q 013675          314 GFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR-------------NREIRKHQFVAVTEWSGGL  379 (438)
Q Consensus       314 g~~~pf~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r-------------~~~~~~~~~~~~~~~~g~~  379 (438)
                      .+++.    .|. .| |+    ..+|++++++||.+.||.| |+++++             ++++.+..-.         
T Consensus       208 ~GLIa----~g~-~~~P~----~~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~~~I~~---------  268 (399)
T PF00464_consen  208 AGLIA----GGL-FPNPF----PYADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELAEKIDS---------  268 (399)
T ss_dssp             HHHHH----TTS-S--GC----CTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHHHHHHH---------
T ss_pred             cccee----hhe-ecCcc----ccceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHHHHHHhcc---------
Confidence            77763    232 21 33    3489999999999989887 888888             2222211100         


Q ss_pred             cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       380 ~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..-|...|+..-..++++..+++......+++..+++.++|+.|++.|.+. |+++
T Consensus       269 avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v  323 (399)
T PF00464_consen  269 AVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKV  323 (399)
T ss_dssp             HHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EE
T ss_pred             ccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEE
Confidence            011233333444457788888887766778999999999999999999986 6665

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK09148 aminotransferase; Validated

Probab=99.69  E-value=1.1e-14  Score=147.73  Aligned_cols=234  Identities=13%  Similarity=0.096  Sum_probs=158.1

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      .|....+..++.+.+.+++.+.+|.+  ++ +    +  ++|+|+++++.+++.++.+     +|   ++|+++.++|+.
T Consensus        63 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~----I--~it~G~~~al~~~~~~l~~-----~g---d~Vl~~~P~y~~  128 (405)
T PRK09148         63 RYSASKGIPGLRRAQAAYYARRFGVKLNPDTQ----V--VATLGSKEGFANMAQAITA-----PG---DVILCPNPSYPI  128 (405)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----E--EEcCChHHHHHHHHHHhcC-----CC---CEEEEcCCCCcc
Confidence            34445567788888888888777753  43 3    6  8999999999999988763     67   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCCC--CccCHHHHHHhhccCcEEEEEecCCCCCccccCH---HHHHHHHHHcCCeEEEecccc
Q 013675          239 YDKAAQYFNIKLWRVPVDKE--FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPI---QELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~~--~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +...+...|++++.+|++++  +..+++++.+...++++++++++|+||||.+.+.   ++|.++|+++|+++++|++|+
T Consensus       129 ~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~  208 (405)
T PRK09148        129 HAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYS  208 (405)
T ss_pred             cHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccch
Confidence            99999999999999999753  3334444444444688999999999999999885   678889999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhccc--ccCCCccCCCCccCC
Q 013675          314 GFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVT--EWSGGLYVSPTVAGS  388 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~--~~~g~~~~~~~~~gs  388 (438)
                      .+...  ..   ..+.+. . ...+..++..++.|... .+..+|+++. ++++.+.......  .|..          +
T Consensus       209 ~~~~~--~~---~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~-~~~~i~~l~~~~~~~~~~~----------~  272 (405)
T PRK09148        209 EIYFD--GN---PPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG-NERLIAALTRVKSYLDYGA----------F  272 (405)
T ss_pred             hhhcC--CC---CCCChhhCCCccCcEEEEeccccccCCcchheeeeeC-CHHHHHHHHHHHHHhccCC----------C
Confidence            66431  10   011111 1 11234566788999843 3345899765 4444332111110  1100          0


Q ss_pred             CCCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          389 RPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       389 r~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                         ..  ...++...+  +.+..++..+.+.+..+++.+.|++.
T Consensus       273 ---~~--~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~  311 (405)
T PRK09148        273 ---TP--IQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA  311 (405)
T ss_pred             ---hH--HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               11  223333333  23445666777888888898998875

>PRK07049 methionine gamma-lyase; Validated

Probab=99.68  E-value=4.4e-15  Score=151.09  Aligned_cols=220  Identities=15%  Similarity=0.127  Sum_probs=157.4

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----  242 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----  242 (438)
                      |....+|+    .++++.|.+.      +  ++++||++|+.+++.++.+     +|   ++|+++.+.|..+...    
T Consensus        83 Pt~~~Le~----~lA~leg~~~------~--iv~~sG~~Ai~~~l~al~~-----~G---d~Vv~~~p~Y~~~~~~~~~~  142 (427)
T PRK07049         83 PNSEIVED----RLAVYEGAES------A--ALFSSGMSAIATTLLAFVR-----PG---DVILHSQPLYGGTETLLAKT  142 (427)
T ss_pred             cCHHHHHH----HHHHHhCCCc------E--EEEccHHHHHHHHHHHHhC-----CC---CEEEEcCCCcccHHHHHHHH
Confidence            44444444    6888888652      3  7899999999998888763     77   8999999999988665    


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhc-----cCcEEEEEecCCCCCccccCHHHHHHHHHH------cCCeEEEecc
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDPIQELGELALS------HGTCLHVDLC  311 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~iddi~~I~~la~~------~~i~lhVD~a  311 (438)
                      +..+|++++.++.    ..|.++++++++     ++|++|++++|+||||.+.|+++|.+++++      +++++++|.+
T Consensus       143 l~~~Gi~~v~~~~----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDet  218 (427)
T PRK07049        143 FRNFGVGAVGFAD----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNT  218 (427)
T ss_pred             HHhcCcEEEEEeC----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECC
Confidence            3567998777762    246778877774     479999999999999999999999999988      8999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      |.++..         ..++   ..|+|++..|..|+..+..  -+|+++ .++++.+........+ |          .-
T Consensus       219 y~~~~~---------~~pl---~~g~divv~S~SK~~gG~~glr~G~vv-~~~~l~~~l~~~~~~~-g----------~~  274 (427)
T PRK07049        219 LLGPVF---------QKPL---EHGADLSVYSLTKYVGGHSDLVAGAVL-GRKALIRQVRALRSAI-G----------TQ  274 (427)
T ss_pred             cccccc---------CCcc---ccCCCEEEEcCceeecCCCCcEEEEEE-CCHHHHHHHHHHHHhc-C----------CC
Confidence            865432         1122   3368999999999965433  367655 4444433221111111 1          11


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      ..  ...+|++++.+  +.+..++++..++++.+.+.|+++|+++-++|
T Consensus       275 ls--~~~a~l~~r~L--~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~y  319 (427)
T PRK07049        275 LD--PHSCWMLGRSL--ETLVLRMERANRNARAVAEFLRDHPKVEKLHY  319 (427)
T ss_pred             CC--HHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            11  23677776544  56778888889999999999999998875544

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.68  E-value=2e-15  Score=148.99  Aligned_cols=213  Identities=16%  Similarity=0.135  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++++++++|.++++    +  ++|+|+++++..+..++      .+|    .|+++.+.|..+...++..|++++.+
T Consensus        50 ~~lr~~la~~~~~~~~~----i--~~t~G~~~~i~~~~~~l------~~g----~vl~~~p~y~~~~~~~~~~g~~~~~~  113 (330)
T TIGR01140        50 DELRAAAAAYYGLPAAS----V--LPVNGAQEAIYLLPRLL------APG----RVLVLAPTYSEYARAWRAAGHEVVEL  113 (330)
T ss_pred             HHHHHHHHHHhCCChhh----E--EECCCHHHHHHHHHHHh------CCC----eEEEeCCCcHHHHHHHHHcCCEEEEe
Confidence            45666788888987665    6  89999999988865442      133    58999999999999999999999988


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +       |++++++++ ++++++++++|+||||.+.|   +++|+++|+++|+++++|++|+.+...    ..  .  .
T Consensus       114 ~-------d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~----~~--~--~  177 (330)
T TIGR01140       114 P-------DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD----AS--L--A  177 (330)
T ss_pred             C-------CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc----cc--h--h
Confidence            7       899999998 46778999999999999988   667788889999999999999766421    00  1  1


Q ss_pred             cc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      +. ...+-+++..+++|++. .+.++|+++.+++ +..........|.             .  ...++.++...+...+
T Consensus       178 ~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~l~~~~~~~~-------------~--s~~~q~~~~~~l~~~~  241 (330)
T TIGR01140       178 PQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPA-LLARLREALGPWT-------------V--NGPARAAGRAALADTA  241 (330)
T ss_pred             hHhccCCCEEEEEecchhhcCchhhhhheeCCHH-HHHHHHhcCCCCC-------------c--hHHHHHHHHHHHhchH
Confidence            11 11234688889999943 2244798777543 3332211111111             0  1123444444444333


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          409 -YLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       409 -~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                       .++..++..++.+++.+.|++++.++
T Consensus       242 ~~~~~~~~~~~~~~~l~~~L~~~~~~~  268 (330)
T TIGR01140       242 WQAATRARLAAERARLAALLARLGGLE  268 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence             36667888889999999998886554

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.68  E-value=1.2e-14  Score=148.80  Aligned_cols=186  Identities=14%  Similarity=0.212  Sum_probs=137.5

Q ss_pred             cchhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          165 IFQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      ...|..++.+++.+++.+.+|    .++++    +  ++|+|+++++.+++.++.+     +|   |.|+++.+.|+.+.
T Consensus        93 ~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~----I--vit~G~t~al~~l~~~l~~-----pG---D~Vlv~~P~Y~~f~  158 (447)
T PLN02607         93 DYHGLKSFRQAMASFMEQIRGGKARFDPDR----I--VLTAGATAANELLTFILAD-----PG---DALLVPTPYYPGFD  158 (447)
T ss_pred             CCcchHHHHHHHHHHHHHhcCCCCCcCHHH----e--EEcCChHHHHHHHHHHhCC-----CC---CEEEEcCCCCcchH
Confidence            345777888888888888776    34444    6  8999999999998888763     77   89999999999998


Q ss_pred             HHHh-hcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEE
Q 013675          241 KAAQ-YFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHV  308 (438)
Q Consensus       241 ~a~~-~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhV  308 (438)
                      ..+. ..|++++.|++++  ++.+|++++++++++      +++++++++|+||||.+.+   +++|.++|+++|+++++
T Consensus       159 ~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~  238 (447)
T PLN02607        159 RDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVS  238 (447)
T ss_pred             HHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEE
Confidence            8777 4799999999874  467999999999874      6899999999999999987   67888999999999999


Q ss_pred             eccccchhh---hhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEeccccc
Q 013675          309 DLCLGGFVL---PFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIR  365 (438)
Q Consensus       309 D~a~gg~~~---pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~  365 (438)
                      |++|+....   +|..-... ++..+. ....--.+..+..|.++ .+..+|+++..++.+.
T Consensus       239 DEiYa~~~f~~~~f~S~~s~-~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~  299 (447)
T PLN02607        239 DEIYSGSVFSASEFVSVAEI-VEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV  299 (447)
T ss_pred             eccccccccCCCCcccHHHH-HhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHH
Confidence            999986543   11100000 000000 00112355678889843 5566899887555543

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.68  E-value=5.3e-15  Score=148.56  Aligned_cols=230  Identities=16%  Similarity=0.134  Sum_probs=153.3

Q ss_pred             hhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC-eEEecCCCcCcHHH
Q 013675          167 QSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP-EMIIPVSAHSAYDK  241 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~-~Viv~~~~h~s~~~  241 (438)
                      ++..++.+.+.+++.+.+|    .++++    |  ++|+|+++++..++.+...     +|   + +|+++.++|+.+..
T Consensus        66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~----I--~it~Ga~~al~~~~~~~~~-----~g---~~~Vlv~~P~y~~~~~  131 (374)
T PRK02610         66 GGHEALKQAIAEYVNESAAGSSQITPAN----I--SVGNGSDELIRSLLIATCL-----GG---EGSILVAEPTFSMYGI  131 (374)
T ss_pred             CchHHHHHHHHHHhCccccccCCCCHHH----E--EEcCChHHHHHHHHHHHcC-----CC---CCeEEEcCCChHHHHH
Confidence            5666666666666655432    55554    6  8999999999887776542     44   4 79999999999999


Q ss_pred             HHhhcCcEEEEeeCCC-CCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHH-cCCeEEEeccccch
Q 013675          242 AAQYFNIKLWRVPVDK-EFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALS-HGTCLHVDLCLGGF  315 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~-~~i~lhVD~a~gg~  315 (438)
                      +++.+|++++.+|+++ ++.+|+++++++++    ++++++++++|+||||.+.+.+++.++++- +++++++|++|..+
T Consensus       132 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~  211 (374)
T PRK02610        132 LAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEF  211 (374)
T ss_pred             HHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEecccccc
Confidence            9999999999999876 58999999999987    479999999999999999887766666532 48999999999765


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchH
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLI  394 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~i  394 (438)
                      ...  ..    .+.+. .... .++..|+.|.+ ..+..+|+++. ++++.+........|..            +   .
T Consensus       212 ~~~--~~----~~~~~-~~~~-~ivi~SfSK~~g~~GlRiG~~v~-~~~l~~~l~~~~~~~~~------------~---~  267 (374)
T PRK02610        212 SQT--TL----VGELA-QHPN-WVILRTFSKAFRLAAHRVGYAIG-HPELIAVLEKVRLPYNL------------P---S  267 (374)
T ss_pred             Ccc--ch----HHHHh-cCCC-EEEEEecchhccCcccceeeeec-CHHHHHHHHHhcCCCCC------------C---H
Confidence            310  00    11111 1112 35677889995 45567999775 44443322111111110            1   1


Q ss_pred             HHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          395 AGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       395 a~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..+.++...++. +.+.+..++..+..+.+.+.|+++++++
T Consensus       268 ~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~  308 (374)
T PRK02610        268 FSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLR  308 (374)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            123333333332 3445555555566777888888776654

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.68  E-value=4.6e-15  Score=148.75  Aligned_cols=249  Identities=11%  Similarity=0.080  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHhhccC------CCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHH
Q 013675          144 HFSLINEACSMFAHTN------PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDY  217 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n------~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~  217 (438)
                      +.+.+.+++..+....      ........+..+..+++++.+++++|.+..        ++.++|+.++...+..+.  
T Consensus        23 ~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~--------l~~~sG~~a~~~~~~~~~--   92 (370)
T PRK05937         23 LVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEA--------FIVPSGYMANLGLCAHLS--   92 (370)
T ss_pred             HHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeE--------EEECChHHHHHHHHHHhC--
Confidence            5556666666664322      222333344567778889999999999632        445555567654333321  


Q ss_pred             HHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc------cCcEEEEEecCCCCCccccC
Q 013675          218 MRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP  291 (438)
Q Consensus       218 ~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd  291 (438)
                         ++|   +.|++....|.+...+++......+.++     ..|+++|+++++      +++.+|+++++++++|.+.|
T Consensus        93 ---~~~---d~ii~d~~~H~sv~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p  161 (370)
T PRK05937         93 ---SVT---DYVLWDEQVHISVVYSLSVISGWHQSFR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP  161 (370)
T ss_pred             ---CCC---CEEEEEhhhhHHHHHHHHHcCCceEEec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC
Confidence               244   7788889999999998887643333332     358999999987      34678889999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc
Q 013675          292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA  371 (438)
Q Consensus       292 i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~  371 (438)
                      +++|.++|+++|+++|||++++.+.++.. -.|. .  ........+.+..+.+|. ++|.|+|++.. ++ ........
T Consensus       162 l~eI~~l~~~~~~~livDea~~~G~~g~~-g~g~-~--~~~~~~~~~~~~~tlsK~-~g~~G~~vl~~-~~-~~~~~~~~  234 (370)
T PRK05937        162 LEQIIALSKKYHAHLIVDEAHAMGIFGDD-GKGF-C--HSLGYENFYAVLVTYSKA-LGSMGAALLSS-SE-VKQDLMLN  234 (370)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCC-CCch-H--HhhCCCCCcEEEEechhh-hhcCceEEEcC-HH-HHHHHHHh
Confidence            99999999999999999999975444310 0000 0  001111223456677798 78888776543 22 21111000


Q ss_pred             ccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       372 ~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      ...+.        ..++-+...++++.++++.+...+ +...++..++.+++.+.|..
T Consensus       235 ~~~~~--------~s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~  283 (370)
T PRK05937        235 SPPLR--------YSTGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSS  283 (370)
T ss_pred             CCCCe--------ecCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCC
Confidence            00110        111112223556777787775555 45667888899999988865

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.67  E-value=5.6e-15  Score=148.01  Aligned_cols=231  Identities=15%  Similarity=0.089  Sum_probs=160.6

Q ss_pred             hhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675          167 QSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~  244 (438)
                      ++...+.+.+.+++.+.+|.  ++++    +  ++|+|+++++.+++.++.+     +|   ++|+++.++|+.+..+++
T Consensus        65 ~g~~~lr~aia~~~~~~~~~~~~~~~----I--~it~G~~~~l~~~~~~~~~-----~g---d~v~v~~P~y~~~~~~~~  130 (368)
T PRK03317         65 RDAVALRADLAAYLTAQTGVGLTVEN----V--WAANGSNEILQQLLQAFGG-----PG---RTALGFVPSYSMHPIIAR  130 (368)
T ss_pred             CchHHHHHHHHHHhhhhccCCCChhh----E--EECCCHHHHHHHHHHHhcC-----CC---CEEEEeCCChHHHHHHHH
Confidence            45566777777777776664  4444    6  8999999999999998863     77   899999999999999999


Q ss_pred             hcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          245 YFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      ..|++++.+|.++++.+|++++++++++ +++++++++|+||||.+.+.+++.++++.+++++++|++|+.+...     
T Consensus       131 ~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~-----  205 (368)
T PRK03317        131 GTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRS-----  205 (368)
T ss_pred             hcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhccc-----
Confidence            9999999998877889999999999974 6888999999999999999999999999999999999999865421     


Q ss_pred             CCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675          324 GYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       324 g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                      |. .+.... ....-.++..++.|.+. .+..+|+++.+ +++..........|.          .+     ..++.++.
T Consensus       206 ~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~-~~~~~~l~~~~~~~~----------~s-----~~~~~a~~  268 (368)
T PRK03317        206 GT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAA-PAVVDALRLVRLPYH----------LS-----AVTQAAAR  268 (368)
T ss_pred             CC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCC-HHHHHHHHhcCCCCC----------CC-----HHHHHHHH
Confidence            10 001111 01112356668899843 34557887754 444332211111111          01     11222322


Q ss_pred             HHHc-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          402 MSLG-QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       402 ~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..+. .+.+.+..++..+..+++.+.|++. |++
T Consensus       269 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  301 (368)
T PRK03317        269 AALRHADELLASVAALRAERDRVVAWLREL-GLR  301 (368)
T ss_pred             HHhhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence            2232 2345556666777778888888765 443

>PRK08175 aminotransferase; Validated

Probab=99.67  E-value=1.4e-14  Score=146.65  Aligned_cols=243  Identities=14%  Similarity=0.104  Sum_probs=162.7

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ...|....+..++.+.+.+++.+.+|.+  +++   ++  ++|+|+++++..++.++.     .+|   ++|+++.++|+
T Consensus        60 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~i--~~t~G~~~~l~~~~~~~~-----~~g---d~Vlv~~P~y~  126 (395)
T PRK08175         60 THGYSTSRGIPRLRRAISRWYQDRYDVDIDPES---EA--IVTIGSKEGLAHLMLATL-----DHG---DTVLVPNPSYP  126 (395)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cE--EEccCcHHHHHHHHHHhC-----CCC---CEEEEcCCCCc
Confidence            3445556677888888888888877764  331   25  899999999998887765     377   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccCH---HHHHHHHHHcCCeEEEecc
Q 013675          238 AYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDPI---QELGELALSHGTCLHVDLC  311 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lhVD~a  311 (438)
                      .+...++..|++++.+|+++++ .+.++++++++   ++++++++++|+||||.+.+.   ++|.++|+++|+++++|.+
T Consensus       127 ~~~~~~~~~g~~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~  205 (395)
T PRK08175        127 IHIYGAVIAGAQVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLA  205 (395)
T ss_pred             chHHHHHHcCCeEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence            9999899999999999997643 35888888886   378999999999999999886   7899999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675          312 LGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      |+.+..   +  +...+++. . ...+..+++.++.|.+. ....+|+++. ++++.+..........          .+
T Consensus       206 y~~l~~---~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~-~~~l~~~~~~~~~~~~----------~~  269 (395)
T PRK08175        206 YADIVY---D--GWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSYHD----------YG  269 (395)
T ss_pred             hHhhcc---C--CCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC-CHHHHHHHHHHHhhcc----------cC
Confidence            976542   1  11011111 1 11234466788999952 3345788765 4444432211110000          00


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      -+.....++..++.. ....+++..+...+.++++.+.|+++ ++.
T Consensus       270 ~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~  313 (395)
T PRK08175        270 TFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEA-GWM  313 (395)
T ss_pred             CCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            001111122233321 23445666777778888899998876 443

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.67  E-value=1.5e-14  Score=146.32  Aligned_cols=202  Identities=13%  Similarity=0.080  Sum_probs=141.1

Q ss_pred             HHHHHHHHHhhcc-CCCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc
Q 013675          146 SLINEACSMFAHT-NPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR  222 (438)
Q Consensus       146 ~~~~~~~~~~~~~-n~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~  222 (438)
                      +.+.+++...... ....|....|..++.+.+.+++.+..+.  ++++    +..++|+|+++|+.++++++..   ..+
T Consensus        47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~----i~v~iT~Ga~~al~~~~~~l~~---~~p  119 (396)
T PRK09257         47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGR----VATVQTPGGTGALRVGADFLKR---AFP  119 (396)
T ss_pred             HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCe----EEEEecCCccHHHHHHHHHHHH---hCC
Confidence            4455555544332 2234666778788888888777655332  3332    2237899999999999876531   137


Q ss_pred             CCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC-CC-CCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HHH
Q 013675          223 GITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DK-EFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQE  294 (438)
Q Consensus       223 G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~-~~-~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~~  294 (438)
                      |   |+|++++++|+.+..+++..|++++.+|+ ++ ++.+|++++++++.   +++.+++.++|+||||.+.+   +++
T Consensus       120 G---d~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~  196 (396)
T PRK09257        120 D---AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDE  196 (396)
T ss_pred             C---CeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHH
Confidence            7   99999999999999999999999999998 33 57899999999886   34678888999999999976   678


Q ss_pred             HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCC-CCCcEEEEE
Q 013675          295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLA-PKGTSVVLY  359 (438)
Q Consensus       295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~-p~g~g~l~~  359 (438)
                      |+++|++||+++++|.+|..+....-.... .++.++... .-.+++.|+.|.... +..+|++++
T Consensus       197 l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~-~~~~~~~~~-~~vi~i~SfSK~~~~~GlRiG~~~~  260 (396)
T PRK09257        197 LAELLKERGLIPFLDIAYQGFGDGLEEDAY-GLRAFAAAG-LELLVASSFSKNFGLYGERVGALSV  260 (396)
T ss_pred             HHHHHHhCCcEEEEeccccccccchHHHHH-HHHHHHhcC-CcEEEEEEcCCcCccccccceeEEE
Confidence            889999999999999999765420000000 000111111 124677889999432 455898774

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.66  E-value=5e-15  Score=148.00  Aligned_cols=240  Identities=16%  Similarity=0.083  Sum_probs=157.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      |..+|.+.++|++    +++++|.+.      +  +.|++||.|+.++..+..     ++|   ++|  +...|..-..+
T Consensus        67 yag~~s~~~lE~~----va~~~G~~~------a--v~v~sGT~Al~ll~~l~l-----~pG---DeV--psn~~f~Tt~a  124 (450)
T TIGR02618        67 YAGSRNFYHLERT----VRELYGFKY------V--VPTHQGRGAENLLSQIAI-----KPG---DYV--PGNMYFTTTRY  124 (450)
T ss_pred             hcCCCcHHHHHHH----HHHHHCCCe------E--EEcCCHHHHHHHHHHhCC-----CCc---CEE--CCceeHHHHHH
Confidence            6677888888875    788889874      2  899999999886532222     366   655  66777665555


Q ss_pred             -HhhcCcEEEEeeCC---------C-CCccCHHHHHHhhccC----cEEEEEecCCCCC-ccc---cCHHHHHHHHHHcC
Q 013675          243 -AQYFNIKLWRVPVD---------K-EFRADVKAIKKYINRN----TVLIVGSAPGFPH-GII---DPIQELGELALSHG  303 (438)
Q Consensus       243 -~~~~Gi~v~~v~~~---------~-~~~~d~~~Le~~I~~~----t~~vv~~~~~~~t-G~i---ddi~~I~~la~~~~  303 (438)
                       ..+.|...+.++.+         + +|.+|+++++++|+++    +.+|++..++|.. |..   +++++|.++|++||
T Consensus       125 hIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~G  204 (450)
T TIGR02618       125 HQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHG  204 (450)
T ss_pred             HHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcC
Confidence             68888877666543         2 6889999999999863    4467777777755 677   66899999999999


Q ss_pred             CeEEEeccccchhhhhhh--hcCC-CCCCC----ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC
Q 013675          304 TCLHVDLCLGGFVLPFAK--KLGY-PIPPF----DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS  376 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~--~~g~-~~p~~----~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~  376 (438)
                      +++|.|+|....-.-|.+  ..|+ .. +.    .--...+|++++|+||.+.+|.| |+++++++++.+.......-+ 
T Consensus       205 l~vi~DaAR~~gNA~~I~~re~g~~~~-~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~-  281 (450)
T TIGR02618       205 IKVFYDATRCVENAYFIKEREQGYEDK-SIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVVF-  281 (450)
T ss_pred             CEEEEEccchhhChhhhhcccccccCC-CHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhhc-
Confidence            999999997542111211  1121 01 11    11133579999999999999986 778889887765533222222 


Q ss_pred             CCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          377 GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       377 g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +|.    ...|.-.+..+.++..+|...-.   ....++....+++|.+.|.+. |+.+
T Consensus       282 eG~----~tyGgla~r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~-Gvpv  332 (450)
T TIGR02618       282 EGM----PSYGGLAGRDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAA-GVPI  332 (450)
T ss_pred             CCc----cccCchhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence            211    11222222223344444433221   245566777899999999887 6654

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.66  E-value=1.1e-14  Score=148.06  Aligned_cols=226  Identities=15%  Similarity=0.049  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++.+.+++++|.+ ..       +++++|++|+..++.++...   .+|   +.|+++...|.++..+++..|.+++.
T Consensus        93 ~~~Le~~la~~~g~~-~~-------i~~~sG~~a~~~~i~~l~~~---~~g---~~vi~~~~~h~s~~~~~~~~g~~~~~  158 (410)
T PRK13392         93 HVLLERELADLHGKE-SA-------LLFTSGYVSNDAALSTLGKL---LPG---CVILSDALNHASMIEGIRRSGAEKQV  158 (410)
T ss_pred             HHHHHHHHHHHhCCC-CE-------EEECcHHHHHHHHHHHHhcC---CCC---CEEEEehhhhHHHHHHHHHcCCeEEE
Confidence            346667899999964 32       56666788988888865421   245   78888888999998888889999877


Q ss_pred             eeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          253 VPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      ++.+     |.+++++.++    ++|++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+...   ..|....
T Consensus       159 ~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g---~~g~g~~  230 (410)
T PRK13392        159 FRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYG---ARGGGIA  230 (410)
T ss_pred             EeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcC---CCCCchh
Confidence            7643     4455555553    57899999999999999999999999999999999999999733220   0111010


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      ........+|+++.+.+|.+ +..| |++.. ++++..........|.        ...+.+....+++.++|+.+..  
T Consensus       231 ~~~~~~~~~div~~tlsK~~-g~~G-G~~~~-~~~~~~~l~~~~~~~~--------~s~~~~~~~~~a~~aaL~~~~~--  297 (410)
T PRK13392        231 ERDGLMDRIDMIQGTLAKAF-GCLG-GYIAA-SADLIDFVRSFAPGFI--------FTTALPPAVAAGATAAIRHLKT--  297 (410)
T ss_pred             hhccCCCCCcEEEEEChHhh-hccc-chhhc-CHHHHHHHHHhCcchh--------ccCcCCHHHHHHHHHHHHHHhc--
Confidence            11111234688888999984 3344 66544 4444332211111111        0011122234455566655422  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..+..++..++++++.+.|+++ |++
T Consensus       298 ~~~~~~~~~~~~~~l~~~L~~~-g~~  322 (410)
T PRK13392        298 SQTERDAHQDRVAALKAKLNAN-GIP  322 (410)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            3345567788889999999875 444

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.66  E-value=4.5e-15  Score=150.10  Aligned_cols=179  Identities=18%  Similarity=0.217  Sum_probs=137.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      +....+..++.+.+.+++.+.++.  ++++    +  ++|+|+++++..++.++.     .+|   ++|+++.++|..+.
T Consensus        69 y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---d~Vli~~p~~~~~~  134 (394)
T PRK06836         69 YMPNAGYPEVREAIAESLNRRFGTPLTADH----I--VMTCGAAGALNVALKAIL-----NPG---DEVIVFAPYFVEYR  134 (394)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCcCc----E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEcCCCCccHH
Confidence            434456666777777777665543  4554    6  899999999999988875     367   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCCC-CccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHH------cCCeEEEec
Q 013675          241 KAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALS------HGTCLHVDL  310 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~-~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~------~~i~lhVD~  310 (438)
                      ..++.+|++++.+|++++ +.+|+++++++++++++++++++|+||||.+.|   +++|+++|++      ||+++++|+
T Consensus       135 ~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De  214 (394)
T PRK06836        135 FYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDE  214 (394)
T ss_pred             HHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEec
Confidence            999999999999999874 789999999999999999999999999999977   6677778888      899999999


Q ss_pred             cccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEec
Q 013675          311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRN  361 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~  361 (438)
                      +|..+...     +...+.+ .....-.++..|+.|.+. .+..+|++...+
T Consensus       215 ~y~~~~~~-----~~~~~~~-~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~  260 (394)
T PRK06836        215 PYREIVYD-----GAEVPYI-FKYYDNSIVVYSFSKSLSLPGERIGYIAVNP  260 (394)
T ss_pred             cccccccC-----CCCCCCh-HHccCcEEEEecchhhccCcceeeEEEecCH
Confidence            99765421     1001111 111223577788999843 345689977754

>PLN02822 serine palmitoyltransferase

Probab=99.66  E-value=6.8e-15  Score=151.92  Aligned_cols=259  Identities=17%  Similarity=0.132  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      +.+.+.+.+..+-. +...+..+-+......++.+.++++++.+. .    +  ++++|++ ++..++.++.     ++|
T Consensus       128 i~ea~~~al~~~G~-g~~g~r~~yg~~~~~~~Lee~La~~~~~~~-~----i--~~s~G~~-a~~sai~a~~-----~~g  193 (481)
T PLN02822        128 IKESCTSALEKYGV-GSCGPRGFYGTIDVHLDCETKIAKFLGTPD-S----I--LYSYGLS-TIFSVIPAFC-----KKG  193 (481)
T ss_pred             HHHHHHHHHHHhCC-CCcccCccccCHHHHHHHHHHHHHHhCCCC-E----E--EECCHHH-HHHHHHHHhC-----CCC
Confidence            44555555554322 112222233445566677778999998763 2    4  6676666 6777777765     367


Q ss_pred             CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhc--cCc-EEEEEecCCCCCccccCHHHHHHH
Q 013675          224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYIN--RNT-VLIVGSAPGFPHGIIDPIQELGEL  298 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~--~~t-~~vv~~~~~~~tG~iddi~~I~~l  298 (438)
                         |.|++....|+++..++...|.+++.++.++  ++..+++++++...  +++ ++|++..+.+++|.+.|+++|.++
T Consensus       194 ---d~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l  270 (481)
T PLN02822        194 ---DIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRL  270 (481)
T ss_pred             ---CEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHH
Confidence               8999999999999999999999999998763  23333333333321  334 799999999999999999999999


Q ss_pred             HHHcCCeEEEeccccchhhhhhhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC
Q 013675          299 ALSHGTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG  377 (438)
Q Consensus       299 a~~~~i~lhVD~a~gg~~~pf~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g  377 (438)
                      |++||+++++|++|+-+++   ...|.. ...++.....+|+++.+..|. +++.| |+++.+ +++.+.+....   .+
T Consensus       271 ~~k~~~~LIvDEa~s~gvl---G~~G~G~~e~~~v~~~~~dii~~s~sKa-lg~~G-G~i~g~-~~ii~~~~~~~---~~  341 (481)
T PLN02822        271 KEKYRFRVLLDESNSFGVL---GKSGRGLSEHFGVPIEKIDIITAAMGHA-LATEG-GFCTGS-ARVVDHQRLSS---SG  341 (481)
T ss_pred             HHHcCCEEEEECCcccccc---CCCCCChHHHcCCCCCCCeEEEecchhh-hhhCC-eEEEcC-HHHHHHHHhcC---Cc
Confidence            9999999999999973332   111110 001122223579999999999 56666 776654 44443321110   00


Q ss_pred             CccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       378 ~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                           .+..++.|....+++-++++.+.  ...+..++..++.+++.+.|++++|+.+
T Consensus       342 -----~~fsa~lPp~~~~Aa~~aL~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~  392 (481)
T PLN02822        342 -----YVFSASLPPYLASAAITAIDVLE--DNPSVLAKLKENIALLHKGLSDIPGLSI  392 (481)
T ss_pred             -----eeeccccCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence                 11122222222334445664432  2357788899999999999998777654

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.66  E-value=8.2e-15  Score=145.04  Aligned_cols=219  Identities=24%  Similarity=0.256  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          174 AEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       174 ~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      .++++.+++.+| .++++    |  +++.|++|.+...+++++.     +|   +.|+++.+++..+...++..|++++.
T Consensus        60 ~~l~~a~a~~~~~~~~~~----V--~~gnGsde~i~~l~~~~~~-----~g---d~vl~~~Ptf~~Y~~~a~~~g~~~~~  125 (356)
T COG0079          60 RELRAALAEYYGVVDPEN----V--LVGNGSDELIELLVRAFVE-----PG---DTVLIPEPTFSMYEIAAQLAGAEVVK  125 (356)
T ss_pred             HHHHHHHHHHhCCCCcce----E--EEcCChHHHHHHHHHHhhc-----CC---CEEEEcCCChHHHHHHHHhcCCeEEE
Confidence            355667889999 66555    5  7799999999999999884     77   89999999999999999999999999


Q ss_pred             eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      ||.++ +.+|++++.+++++++++|++++||||||...+.++|.+++...  +.+++||+||..|.-+  +.    ++..
T Consensus       126 v~~~~-~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~--~~----~~l~  198 (356)
T COG0079         126 VPLKE-FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPE--SS----LELL  198 (356)
T ss_pred             ecccc-cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCc--hh----hhhc
Confidence            99988 99999999999999999999999999999999988888887754  7899999999765431  00    1001


Q ss_pred             ccCCCCccEEEeCCCC-CCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHH
Q 013675          331 DFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK-~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g  408 (438)
                      .  ...--++.=++.| +|.++..+|+ .+.++++..........|.-..               .+..++...+. .+.
T Consensus       199 ~--~~~nlivlRTfSKa~gLAGlRlGy-~ia~~~~i~~l~~vr~p~~v~~---------------~a~~aa~aal~~~~~  260 (356)
T COG0079         199 K--YPPNLIVLRTFSKAFGLAGLRVGY-AIANPELIAALNKVRPPFNVSS---------------PALAAAIAALRDADY  260 (356)
T ss_pred             c--CCCCEEEEEecHHhhhcchhceee-ccCCHHHHHHHHHhcCCCCCCH---------------HHHHHHHHHcccHHH
Confidence            1  1111266668889 5677888999 5666776665555555554331               13333333332 256


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      +++..+++.+.++++.+.|++++
T Consensus       261 ~~~~~~~~~~~r~rl~~~l~~~~  283 (356)
T COG0079         261 LEESVERIREERERLYAALKALG  283 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Confidence            78888999999999999999885

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.66  E-value=2.9e-15  Score=149.00  Aligned_cols=242  Identities=11%  Similarity=0.016  Sum_probs=168.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-H
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-K  241 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~  241 (438)
                      ...+|.+.++..++.+.+.++++.+.+.    -+-+++.+||.++.+++..+..    .+|   +++++...--..|. +
T Consensus        31 ~HRs~~F~~i~~e~~~~L~~l~~~~~~~----~v~~l~GsGT~a~Eaa~~nl~~----~~g---~~vLv~g~FG~r~~~e   99 (374)
T TIGR01365        31 SHRSKLGKEKLAEAIKKTREMLGVPADY----LIGIVPASDTGAVEMALWSMLG----CRG---VDVLAWESFGKGWVTD   99 (374)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHhCCCCCc----EEEEECCchHHHHHHHHHHcCC----CCC---CeEEEECHHHHHHHHH
Confidence            3568889999999999999999985432    1347799999999999988752    145   67777651112245 8


Q ss_pred             HHhhcCc-EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          242 AAQYFNI-KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       242 a~~~~Gi-~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      .++.+|+ +++.+..+.+..+|+++++.  ++   .|+++|..|.||+..|+++|.+.+  +++.++||++.+-+..   
T Consensus       100 ia~~~g~~~v~~l~~~~g~~~~~~~ve~--~~---~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~---  169 (374)
T TIGR01365       100 VTKQLKLPDVRVLEAEYGKLPDLKKVDF--KN---DVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQ---  169 (374)
T ss_pred             HHHhcCCCCcEEEcCCCCCCCCHHHcCC--CC---CEEEecCCCchheecccccccccc--CCCcEEEEccchhcCC---
Confidence            8899999 58888877777889999984  22   267999999999999997666432  5899999999654333   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch-hcccccCCCcc--C--C--CC-c-cCCCCC
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF-VAVTEWSGGLY--V--S--PT-V-AGSRPG  391 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~-~~~~~~~g~~~--~--~--~~-~-~gsr~~  391 (438)
                              +++..  ++|++..+++|++.+|+|.|++.++++.+.+..- ....+|+....  .  .  .. . ..++..
T Consensus       170 --------~l~~d--~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~T  239 (374)
T TIGR01365       170 --------DLDYH--KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINT  239 (374)
T ss_pred             --------CCChh--HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCC
Confidence                    34444  5999999999999999999999999876543221 00001111000  0  0  00 0 113333


Q ss_pred             chHHHHHHH---HHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          392 GLIAGAWAA---LMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       392 ~~ia~~~aa---l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..+.++++.   ++.+.++ |++.+.++..++++.+++.+++++.+++
T Consensus       240 P~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~  287 (374)
T TIGR01365       240 PSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHF  287 (374)
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence            344455554   4444465 8999999999999999999999853543

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.66  E-value=1e-14  Score=145.53  Aligned_cols=243  Identities=16%  Similarity=0.173  Sum_probs=157.9

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCC--CCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGN--KEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..|....+..++++.+.+++.+-.|.  +++ +    +  ++++|+.+++..+...++    ..+|   +.|+++.+.|+
T Consensus        38 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~----i--~~~~G~~~~~~~~~~~~~----~~~~---~~vlv~~P~y~  104 (363)
T PF00155_consen   38 LGYPPPQGYPELREAIADFLGRRYGVPVDPEAN----I--LVTSGAQAALFLLLRLLK----INPG---DTVLVPDPCYP  104 (363)
T ss_dssp             TSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEG----E--EEESHHHHHHHHHHHHHH----SSTT---SEEEEEESSST
T ss_pred             ccCCCchhhHHHHHHHHHHhhhccCcccccceE----E--EEecccccchhhhhhccc----cccc---ccceecCCccc
Confidence            44555667777887766666644444  333 3    3  555555555555555442    1255   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHH---HHHHHHHHcCCeE
Q 013675          238 AYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQ---ELGELALSHGTCL  306 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~---~I~~la~~~~i~l  306 (438)
                      .+...++..|++++.+|++  .++.+|+++|++.+++      ++.++++++|+||||...+.+   +|+++|++||+++
T Consensus       105 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~i  184 (363)
T PF00155_consen  105 SYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIII  184 (363)
T ss_dssp             HHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEE
T ss_pred             cccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccce
Confidence            9999999999999999975  4889999999999988      678999999999999987755   5555599999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCCccCCCCc-cEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCC
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV-TSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT  384 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv-dsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~  384 (438)
                      ++|.+|+.+...   ..+. .+.......+. .++..|..|.+. .+..+|+++. ++++.+........|..       
T Consensus       185 i~De~y~~~~~~---~~~~-~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~-------  252 (363)
T PF00155_consen  185 IVDEAYSDLIFG---DPDF-GPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLS-------  252 (363)
T ss_dssp             EEEETTTTGBSS---SSHT-HHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTS-------
T ss_pred             eeeeceeccccC---CCcc-Ccccccccccccceeeeeccccccccccccccccc-hhhhhhhhhhccccccc-------
Confidence            999999876542   0000 00011111222 478889999843 3345899888 45444432222111111       


Q ss_pred             ccCCCCCchHHHHHHHHHHHcH--HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          385 VAGSRPGGLIAGAWAALMSLGQ--EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       385 ~~gsr~~~~ia~~~aal~~~g~--~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                           +......+...+...+.  +..++..++..++++++.+.|++. ++.
T Consensus       253 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~  298 (363)
T PF00155_consen  253 -----SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GIT  298 (363)
T ss_dssp             -----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSE
T ss_pred             -----cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhh
Confidence                 11111122223322222  266788888999999999999876 544

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.65  E-value=5.7e-15  Score=147.79  Aligned_cols=222  Identities=14%  Similarity=0.064  Sum_probs=152.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++.+|+++++    +  ++|+|+++++.+++.++.+     +|   ++|+++.++|+.+...++..|++++.||
T Consensus        68 ~Lr~aia~~~~~~~~~----I--~vt~Gs~e~i~~~~~~l~~-----~g---d~vlv~~P~y~~~~~~~~~~g~~v~~v~  133 (366)
T PRK01533         68 TLRQTIANKLHVKMEQ----V--LCGSGLDEVIQIISRAVLK-----AG---DNIVTAGATFPQYRHHAIIEGCEVKEVA  133 (366)
T ss_pred             HHHHHHHHHhCCCcce----E--EECCCHHHHHHHHHHHhcC-----CC---CEEEEcCCcHHHHHHHHHHcCCEEEEee
Confidence            4556678888998876    7  8999999999999998763     67   8999999999999999999999999999


Q ss_pred             CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHH---HcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL---SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~---~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      ++ ++.+|+++++++++++++++++++|+||||.+.+.+++.++++   +++ ++++|.+|..+...  .  .. .+...
T Consensus       134 ~~-~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~--~--~~-~~~~~  206 (366)
T PRK01533        134 LN-NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTA--K--DF-PETLP  206 (366)
T ss_pred             cC-CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcc--c--cC-cchhH
Confidence            96 4579999999999989999999999999999988766666654   444 67889998754421  0  00 00111


Q ss_pred             c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HH
Q 013675          332 F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EG  408 (438)
Q Consensus       332 ~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g  408 (438)
                      . ....-.++..|+.|... ++..+|+++.. +++.+........|.               ....++.++...+.. +.
T Consensus       207 ~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~-~~~~~~l~~~~~~~~---------------~~~~~q~aa~~~l~~~~~  270 (366)
T PRK01533        207 LLEKHKNILVLRTFSKAYGLASFRVGYAVGH-EELIEKLNVVRLPFN---------------VSSLAQKAATIAFGDDEF  270 (366)
T ss_pred             HhccCCCEEEEeCchHHhcChHHHHhHHhCC-HHHHHHHHHhcCCCC---------------cCHHHHHHHHHHhCCHHH
Confidence            1 11123477778899943 44558887654 444332211111111               112244444444433 44


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .++..+...+..+++.+.++.+ |++
T Consensus       271 ~~~~~~~~~~~r~~~~~~l~~~-g~~  295 (366)
T PRK01533        271 IEEIVRVNTEGLRQYESFCKEN-EIP  295 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence            5566667777788888888765 443

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.65  E-value=7.8e-15  Score=147.18  Aligned_cols=303  Identities=17%  Similarity=0.213  Sum_probs=219.1

Q ss_pred             CCCCc-HHHHHHHHHHhCCCCCCC--CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHHHHHHHHHHH
Q 013675          105 RAGLG-VGVIEKLKEEKGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVARFEAEVIAMT  180 (438)
Q Consensus       105 ~~g~~-~~i~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~~e~~~~~~~  180 (438)
                      ..-.| .+++++++++.+++....  --..|.+...-+.   ..+++--.+..|.+-.|+.| +..++..++..++.+++
T Consensus       515 n~yhSEt~lvRYm~kLenKDlSLvhSMiPLGSCTMKLNs---ttEmmPiTwp~fanIHPF~P~eQaqGY~~lf~~Le~~L  591 (1001)
T KOG2040|consen  515 NSYHSETELVRYMKKLENKDLSLVHSMIPLGSCTMKLNS---TTEMMPITWPEFANIHPFAPVEQAQGYQQLFTELEKDL  591 (1001)
T ss_pred             hhcccHHHHHHHHHHhhccchhhhhhcccccceeeeccc---cceeccccchhhccCCCCCchHHHhhHHHHHHHHHHHh
Confidence            45568 999999999977766543  3455666665444   35566666777888888876 67899999999999999


Q ss_pred             HHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCC
Q 013675          181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEF  259 (438)
Q Consensus       181 a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~  259 (438)
                      |++.|.|.-.       .-.++|.++-...+++.|.+... +|- .+..-++|.++|......+.+.|++++.|.++.+|
T Consensus       592 c~iTG~D~~s-------~QPNsGA~GEYaGL~~IRaY~~~-kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G  663 (1001)
T KOG2040|consen  592 CEITGFDSFS-------LQPNSGAQGEYAGLRVIRAYLES-KGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANG  663 (1001)
T ss_pred             heeeccccee-------ecCCCCcccchhhHHHHHHHHHh-ccCCcceeEEEeecccCCChhhHHhcCCEEEEeeccCCC
Confidence            9999998642       56677888888888888877664 343 23456999999999999999999999999999999


Q ss_pred             ccCHHHHHHhhcc---CcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCC
Q 013675          260 RADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ  335 (438)
Q Consensus       260 ~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~  335 (438)
                      .+|..+|+++.++   +-.++.++.|++ +|.+++ +++++++.|++|--+..|||--      ...+|.    -.....
T Consensus       664 ~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANM------NAqVGl----c~pGd~  732 (1001)
T KOG2040|consen  664 NIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANM------NAQVGL----CRPGDI  732 (1001)
T ss_pred             CccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCc------cceecc----cCCccc
Confidence            9999999998865   467999999988 899976 9999999999999999999941      123343    233556


Q ss_pred             CccEEEeCCCCCCCCCC-----CcEEEEEecccccccc---hhcccccCCCccCCCCccCCCCC--chHHHHHHHHHHHc
Q 013675          336 GVTSISVDVHKYGLAPK-----GTSVVLYRNREIRKHQ---FVAVTEWSGGLYVSPTVAGSRPG--GLIAGAWAALMSLG  405 (438)
Q Consensus       336 gvdsis~s~hK~~~~p~-----g~g~l~~r~~~~~~~~---~~~~~~~~g~~~~~~~~~gsr~~--~~ia~~~aal~~~g  405 (438)
                      |.|+.-.+.||.++-|.     |.|-+.++.. +....   -...+.-.++...-.+......|  ..+.-.|+-++.+|
T Consensus       733 GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~H-LapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG  811 (1001)
T KOG2040|consen  733 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMG  811 (1001)
T ss_pred             cccceeecccceeeecCCCCCCCCCccchhhh-ccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhc
Confidence            88999999999965444     4455555432 21110   00000000000000000111111  12334688999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..|+.+..+-.+-+|.|++++|+..
T Consensus       812 ~~GL~~as~~AiLNaNYMakRLe~h  836 (1001)
T KOG2040|consen  812 SGGLKDASKIAILNANYMAKRLESH  836 (1001)
T ss_pred             ccccchhhHHHhhhhHHHHHHHhhc
Confidence            9999999999999999999999874

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.65  E-value=2.8e-14  Score=144.75  Aligned_cols=209  Identities=12%  Similarity=0.103  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHhhc-cCCCCcccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh
Q 013675          145 FSLINEACSMFAH-TNPLHLDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK  221 (438)
Q Consensus       145 ~~~~~~~~~~~~~-~n~~~~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~  221 (438)
                      .+.+.+++..... ....+|....|..++.+.+.+++.+..+  .++++    +....|.|+++|+.+++.+++...  .
T Consensus        49 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~----v~~~~t~G~~~al~~~~~~l~~~~--~  122 (404)
T PTZ00376         49 LESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKR----IATVQALSGTGALRLGFEFLKRFL--P  122 (404)
T ss_pred             hhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCe----EEEeeccCcchHHHHHHHHHHHhc--C
Confidence            4455555533332 2335566677888888887777755433  24444    511159999999998877543221  3


Q ss_pred             cCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HH
Q 013675          222 RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQ  293 (438)
Q Consensus       222 ~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~  293 (438)
                      +|   |+|++++++|+.+...++..|++++.+|+.  +++.+|++.+++++.   ++++++++++|+||||.+.+   ++
T Consensus       123 ~G---d~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~  199 (404)
T PTZ00376        123 AG---TTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWK  199 (404)
T ss_pred             CC---CEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHH
Confidence            67   999999999999999999999999999994  358999999999985   35688889999999999976   66


Q ss_pred             HHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEE--Eeccc
Q 013675          294 ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVL--YRNRE  363 (438)
Q Consensus       294 ~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~--~r~~~  363 (438)
                      +|+++|++|++++++|.+|..+.....+........+... ..-.++..|+.|... .+..+|+++  +.+++
T Consensus       200 ~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~-~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~  271 (404)
T PTZ00376        200 EIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAER-GVEFLVAQSFSKNMGLYGERIGALHIVCANKE  271 (404)
T ss_pred             HHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCcccccccccceEEEEeCCHH
Confidence            7888899999999999999765431000000000011111 112467778899954 446689975  45554

>PRK07908 hypothetical protein; Provisional

Probab=99.64  E-value=9.6e-15  Score=145.26  Aligned_cols=216  Identities=19%  Similarity=0.166  Sum_probs=145.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++.+|.++++    +  ++|+|+++++.++++ +.      +|    .+++..+++..+...++..|++++.+|
T Consensus        62 ~lr~aia~~~~~~~~~----I--~it~Ga~~al~~~~~-l~------~~----~viv~~P~y~~~~~~~~~~G~~i~~v~  124 (349)
T PRK07908         62 RARAAVAARHGRTPDE----V--LLLAGAAEGFALLAR-LR------PR----RAAVVHPSFTEPEAALRAAGIPVHRVV  124 (349)
T ss_pred             HHHHHHHHHhCcChhh----E--EECCCHHHHHHHHHh-cC------CC----eEEEeCCCChHHHHHHHHcCCEEEeec
Confidence            4556777888988776    7  899999999988776 21      33    567788899888999999999999999


Q ss_pred             CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCC
Q 013675          255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV  334 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~  334 (438)
                      +++++.+|++++    +++++++++++|+||||.+.+.++|.++|++ +.++++|++|+.+..      +. .+++....
T Consensus       125 ~~~~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~------~~-~~~l~~~~  192 (349)
T PRK07908        125 LDPPFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVP------GE-PESLAGDD  192 (349)
T ss_pred             cCcccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhcc------CC-cccccccc
Confidence            987788999855    4578899999999999999999999999964 789999999975421      11 11111111


Q ss_pred             CCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch-HHHHHHHHHHHcHHHHHHH
Q 013675          335 QGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL-IAGAWAALMSLGQEGYLEN  412 (438)
Q Consensus       335 ~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~-ia~~~aal~~~g~~g~~~~  412 (438)
                      ..-.++..+++|.. ..+..+|+++.+ +++.+........|..             +.. .+++...+...+.+.+++.
T Consensus       193 ~~~~i~i~S~SK~~~l~GlRiG~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~  258 (349)
T PRK07908        193 LPGVLVLRSLTKTWSLAGLRVGYALGA-PDVLARLTRGRAHWPV-------------GTLQLEAIAACCAPRAVAEAAAD  258 (349)
T ss_pred             CCCEEEEeecccccCCccceeeeeecC-HHHHHHHHhcCCCCCc-------------cHHHHHHHHHHhcccchHHHHHH
Confidence            11134445889973 244557998865 3333322111111211             111 1122222211123456677


Q ss_pred             HHHHHHHHHHHHHHhhcCCCcc
Q 013675          413 TKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       413 ~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .++..++++++.+.|+++ +++
T Consensus       259 ~~~~~~~r~~l~~~L~~~-~~~  279 (349)
T PRK07908        259 AARLAADRAEMVAGLRAV-GAR  279 (349)
T ss_pred             HHHHHHHHHHHHHHHHhC-CcE
Confidence            788888899999999876 554

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.64  E-value=1.4e-15  Score=140.37  Aligned_cols=234  Identities=22%  Similarity=0.223  Sum_probs=161.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      +..-|...++|++    +|+++|-+        .|+|+++||++|++++++.++    ++|   .+||+...+|.-..+.
T Consensus        52 yGeD~tt~rLE~~----vA~l~GKE--------AgLFv~SGTmgNllaIm~Hc~----~rg---~eii~gd~~HI~~~E~  112 (384)
T KOG1368|consen   52 YGEDPTTNRLEQR----VAELFGKE--------AGLFVPSGTMGNLLAIMVHCH----QRG---SEIIVGDRAHIHRYEQ  112 (384)
T ss_pred             ccCCccHHHHHHH----HHHHhCcc--------ceeeecccccccHHHHHHHhc----CCC---ceEEeccchheeehhc
Confidence            3445667888886    67777765        458999999999999999886    367   7999999999765543


Q ss_pred             ---HhhcCcEEEEeeCCCCCccCHHHHHHhhcc--------CcEEEEEecCCCCCc-cccCHH---HHHHHHHHcCCeEE
Q 013675          243 ---AQYFNIKLWRVPVDKEFRADVKAIKKYINR--------NTVLIVGSAPGFPHG-IIDPIQ---ELGELALSHGTCLH  307 (438)
Q Consensus       243 ---~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~--------~t~~vv~~~~~~~tG-~iddi~---~I~~la~~~~i~lh  307 (438)
                         ....|+.++.+...+++.||++++|++|..        -|++|++.+-.+.+| .+.|++   +|.++|+++|+.+|
T Consensus       113 gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH  192 (384)
T KOG1368|consen  113 GGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLH  192 (384)
T ss_pred             cChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeee
Confidence               334478888888888999999999999973        279999999988888 777755   77889999999999


Q ss_pred             EeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccC
Q 013675          308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG  387 (438)
Q Consensus       308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g  387 (438)
                      .|||--.-+.   -+.|  + +..--..-+||+++...|.+.+|-|+  +++.++++....-.+.....||.        
T Consensus       193 ~DGARi~NAa---vasg--V-~vk~i~~~fDSVsiCLSKglgAPVGS--ViVG~k~FI~kA~~~RKalGGGm--------  256 (384)
T KOG1368|consen  193 MDGARIFNAA---VASG--V-PVKKICSAFDSVSICLSKGLGAPVGS--VIVGSKDFIDKARHFRKALGGGM--------  256 (384)
T ss_pred             cchhhhhhHH---HHcC--C-CHHHHHHhhhhhhhhhhccCCCCccc--EEEccHHHHHHHHHHHHHhcCch--------
Confidence            9999421110   1122  2 12212223599999999999999874  56666665544322222222222        


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      +..|.+.++...++.   ..  ....++-++.|+.+++.+.+.+++++.
T Consensus       257 RQsGvLaaaaLval~---~~--~~~L~~dHk~A~~lAe~~~~~~~i~v~  300 (384)
T KOG1368|consen  257 RQSGVLAAAALVALD---EN--VPLLRADHKRAKELAEYINTPEEIRVE  300 (384)
T ss_pred             hHHHHHHHHHHHHhh---cc--hHHHHHHHHHHHHHHHHhccccceeee
Confidence            223444333333332   22  236677778888888888887767653

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.64  E-value=3.5e-14  Score=144.00  Aligned_cols=227  Identities=16%  Similarity=0.091  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      ....++.+.+++++|.+.      .  +++++|++|+..++..++..   .+|   +.|+.....|.+....+...|+++
T Consensus        90 ~~~~~Le~~la~~~g~~~------~--l~~~sG~~an~~ai~~l~~~---~~~---~~v~~~~~~h~s~~~~~~~~g~~~  155 (402)
T TIGR01821        90 IPHVELEAELADLHGKES------A--LVFTSGYVANDATLATLAKI---IPG---CVIFSDELNHASMIEGIRHSGAEK  155 (402)
T ss_pred             HHHHHHHHHHHHHhCCCe------E--EEECchHHHHHHHHHHhhCC---CCC---CEEEEcchHhHHHHHHHHHcCCeE
Confidence            344567778999998642      2  67788899999999887631   123   567777778999988888889887


Q ss_pred             EEeeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh-hhhhhcCC
Q 013675          251 WRVPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL-PFAKKLGY  325 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~-pf~~~~g~  325 (438)
                      ..++.+     |++++++.++    ++|++|+++++++++|.+.|+++|.++|++||+++++|++++.+.. ++-  .|.
T Consensus       156 ~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g--~g~  228 (402)
T TIGR01821       156 FIFRHN-----DVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRG--GGI  228 (402)
T ss_pred             EEECCC-----CHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCC--Ccc
Confidence            766542     6778888775    2588999999999999999999999999999999999999873322 210  111


Q ss_pred             CCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       326 ~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                       ....+ ....+|++..+..|.+ +..| |+++.+ +++.+........|        ...++.+....+++.++++.+.
T Consensus       229 -~~~~~-~~~~~div~~t~sKa~-g~~G-G~i~~~-~~~~~~l~~~~~~~--------~~t~~~~~~~~aaa~aaL~~~~  295 (402)
T TIGR01821       229 -AERDG-LMHRIDIIEGTLAKAF-GVVG-GYIAAS-RKLIDAIRSYAPGF--------IFTTSLPPAIAAGATASIRHLK  295 (402)
T ss_pred             -chhcc-CCCCCeEEEEechhhh-ccCC-ceeecC-HHHHHHHHHhCcCc--------eecCcCCHHHHHHHHHHHHHhh
Confidence             00011 1134688888999994 5444 665544 33332211111111        0111122223445556665543


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..  .+..++..++++++.+.|+++ |++
T Consensus       296 ~~--~~~~~~~~~~~~~l~~~L~~~-g~~  321 (402)
T TIGR01821       296 ES--QDLRRAHQENVKRLKNLLEAL-GIP  321 (402)
T ss_pred             cC--HHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            22  444556668899999999875 443

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.64  E-value=3.3e-14  Score=140.76  Aligned_cols=214  Identities=19%  Similarity=0.200  Sum_probs=148.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++++|.++++    +  ++|+|+++++.+++.++       +|   ++|+++.+.|..+..+++..|++++.++
T Consensus        59 ~lr~~ia~~~~~~~~~----I--~~t~G~~~~l~~~~~~~-------~g---d~V~v~~P~y~~~~~~~~~~g~~~~~v~  122 (337)
T PRK03967         59 PLREAIAEFYGLDAEN----I--AVGNGSDELISYLVKLF-------EG---KHIVITPPTFGMYSFYAKLNGIPVIDVP  122 (337)
T ss_pred             HHHHHHHHHhCcCcce----E--EEcCCHHHHHHHHHHHh-------CC---CeEEEeCCChHHHHHHHHHcCCeEEEee
Confidence            4555677788888776    6  89999999998766543       45   8999999999999989999999999999


Q ss_pred             CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCC
Q 013675          255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV  334 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~  334 (438)
                      +++++.+|++++++.+ ++++++++++|+||||.+.+.++|.++++ +++++++|++|..+.-   ..  . .+..+ ..
T Consensus       123 ~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~---~~--~-~~~~~-~~  193 (337)
T PRK03967        123 LKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSG---KS--L-IGLID-EY  193 (337)
T ss_pred             cCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcc---cc--h-HHHHh-hC
Confidence            9888899999999875 57888889999999999999999999995 7999999999976531   00  0 00011 11


Q ss_pred             CCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cHHHHHHH
Q 013675          335 QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQEGYLEN  412 (438)
Q Consensus       335 ~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~~g~~~~  412 (438)
                      .. .++..|+.|... ....+|+++.. +++.+........|.            -+   ..+..++...+ ..+.+.+.
T Consensus       194 ~~-vi~l~S~SK~~~l~GlRiG~iv~~-~~~i~~~~~~~~~~~------------~~---~~~q~~~~~~l~~~~~~~~~  256 (337)
T PRK03967        194 PN-LILLRTFSKAFGLAGIRAGYAIAN-EEIIDALYRIKPPFS------------LN---ILTMKIVRLALDHYDLIEER  256 (337)
T ss_pred             CC-EEEEecchHhhcchhhhheeeecC-HHHHHHHHhhcCCCC------------CC---HHHHHHHHHHHhCHHHHHHH
Confidence            11 467778999954 44668998764 444332211111110            01   11333333223 23445566


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q 013675          413 TKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       413 ~~~~~~~a~~l~~~L~~~  430 (438)
                      .++..+.++.+.+.|.+.
T Consensus       257 ~~~~~~~r~~l~~~L~~~  274 (337)
T PRK03967        257 IDYIIKERERVRRELGEY  274 (337)
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            666677777888888653

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.64  E-value=1.9e-14  Score=151.51  Aligned_cols=226  Identities=12%  Similarity=0.073  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..+..+..|+.||++..-       .+|+|+|.||..++.++..     +|   |.|+++..+|-|+..++.+.|+++++
T Consensus       197 i~eAe~~aA~~fgAd~ty-------fvvNGTS~~n~av~~a~~~-----~G---d~VLvdRN~HKSv~~aLilsga~PVY  261 (713)
T PRK15399        197 HLEAEEYIARTFGAEQSY-------IVTNGTSTSNKIVGMYAAP-----AG---STLLIDRNCHKSLAHLLMMSDVVPIW  261 (713)
T ss_pred             HHHHHHHHHHHhCCCcEE-------EEeCChHHHHHHHHHHhcC-----CC---CEEEeecccHHHHHHHHHHcCCeeEE
Confidence            334555789999999763       7899999999999999873     78   99999999999999999999999999


Q ss_pred             eeCCC-----CCccCH-----HHHHHhhccC-----cEEEEEecCCCCCccccCHHHHHHHHHHcCCeE-EEeccccchh
Q 013675          253 VPVDK-----EFRADV-----KAIKKYINRN-----TVLIVGSAPGFPHGIIDPIQELGELALSHGTCL-HVDLCLGGFV  316 (438)
Q Consensus       253 v~~~~-----~~~~d~-----~~Le~~I~~~-----t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~l-hVD~a~gg~~  316 (438)
                      ++...     -+.++.     +.++++|.++     ++.+++++||+ .|.+.|+++|.++|   |+.+ |||+|||+..
T Consensus       262 l~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd~~~I~~~~---g~~~ilvDEAhgah~  337 (713)
T PRK15399        262 LKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYNTDWIKQTL---DVPSIHFDSAWVPYT  337 (713)
T ss_pred             ecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeCHHHHHHHh---CCCEEEEeccchhhh
Confidence            97653     134555     9999999753     36899999977 89999999999999   6776 8999998754


Q ss_pred             hhhhhhcCCCCCC-Ccc-CCCCccEE---EeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          317 LPFAKKLGYPIPP-FDF-SVQGVTSI---SVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       317 ~pf~~~~g~~~p~-~~~-~~~gvdsi---s~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      . |...    .|+ ... ...+.|.+   +-|+||.+.+-..++++.++.. +....+......        ....|.+.
T Consensus       338 ~-F~p~----~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~-vd~~~~n~a~~m--------~~STSPsY  403 (713)
T PRK15399        338 H-FHPI----YQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGE-YDEETFNEAFMM--------HTSTSPSY  403 (713)
T ss_pred             h-cCcc----cCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCC-CCHHHHHHHHHH--------HcCCCcHH
Confidence            2 3211    111 111 11245666   9999999988888999988653 221111111000        01123444


Q ss_pred             chHHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          392 GLIAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       392 ~~ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      .++|++-.+.+.+.. .| ++..++..+.+..+++.|.++++
T Consensus       404 ~LmASLD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~~~  444 (713)
T PRK15399        404 PIVASVETAAAMLRGNPG-KRLINRSVERALHFRKEVQRLRE  444 (713)
T ss_pred             HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccc
Confidence            567777777766643 44 66788888888899998887654

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.64  E-value=5.9e-15  Score=155.38  Aligned_cols=228  Identities=12%  Similarity=0.071  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..+..+..|+.||++..-       .+|+|+|.+|..++.++.     .+|   +.|+++..+|-|+..++.+.|+++++
T Consensus       197 i~eAe~~AA~~fgAd~ty-------fvvNGTS~~n~av~~a~~-----~~G---d~VLvdRN~HKSv~haLilsga~PVY  261 (714)
T PRK15400        197 HKEAEEYIARVFNADRSY-------MVTNGTSTANKIVGMYSA-----PAG---STVLIDRNCHKSLTHLMMMSDVTPIY  261 (714)
T ss_pred             HHHHHHHHHHHhCCCcEE-------EEeCchHHHHHHHHHHhc-----CCC---CEEEeecccHHHHHHHHHHcCCeEEE
Confidence            345556799999999863       789999999999999876     378   99999999999999999999999999


Q ss_pred             eeCCCC-----CccC-----HHHHHHhhccC-----cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          253 VPVDKE-----FRAD-----VKAIKKYINRN-----TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       253 v~~~~~-----~~~d-----~~~Le~~I~~~-----t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ++...+     +.++     .+.++++|.++     ++.+++++||+ .|.+.|+++|.++|+.++  +|||+|||+...
T Consensus       262 l~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd~~~I~~~~~~~~--ilvDEAwgah~~  338 (714)
T PRK15400        262 FRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTN  338 (714)
T ss_pred             ecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecCHHHHHHHhCCCC--EEEEccchhhhc
Confidence            976531     2345     89999999754     33799999977 899999999999999887  799999987653


Q ss_pred             hhhhhcCCCCCCCccCCCCc---c--EEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          318 PFAKKLGYPIPPFDFSVQGV---T--SISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gv---d--sis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                       |...    .|+...-..|.   |  +++-|+||.+.+-..++++.++.. +....+......        ....|.+..
T Consensus       339 -F~p~----~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-vd~~~~n~a~~m--------~~STSPsY~  404 (714)
T PRK15400        339 -FSPI----YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMM--------HTTTSPHYG  404 (714)
T ss_pred             -cCcc----cCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC-CCHHHHHHHHHH--------HcCCCcHHH
Confidence             2211    11111111334   4  899999999888888888877643 221111110000        011234445


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      ++|++-.+.+.+-.+.-++..++..+.+..+++.|.++++
T Consensus       405 l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~  444 (714)
T PRK15400        405 IVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT  444 (714)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6777877776664323367788888999999999988766

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.63  E-value=6.8e-15  Score=137.47  Aligned_cols=237  Identities=16%  Similarity=0.170  Sum_probs=175.5

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-----H
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-----Y  239 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-----~  239 (438)
                      ..+....+-+.+-..++.++|+.+++    +  +++.+.|--+.-.+.++..   ..+|   ..||+++...+.     .
T Consensus        70 a~~~W~~lp~~lgdklApLiGA~~~E----v--vv~dtts~nl~k~L~aalr---~~~~---r~vIv~E~~~fpTdly~a  137 (407)
T COG3844          70 AKADWFDLPERLGDKLAPLIGARAGE----V--VVTDTTSINLFKVLAAALR---PQEG---RRVIVSEGDNFPTDLYIA  137 (407)
T ss_pred             cCCchhhchhHHHHHhhhhhcCCCCc----e--EEeCCcchHHHHHHHHHhc---cCCC---ceEEeecCCCCCcchhhh
Confidence            34556778888999999999999887    4  5555555444444444432   1234   788888765333     4


Q ss_pred             HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ...++.+|+.     .+-.+.+++.++++++++++.+|++++.++-||...|+.+|.+++|++|+.+.-|-|++.+.+  
T Consensus       138 ~g~~~~~~~~-----~~~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGav--  210 (407)
T COG3844         138 EGLADLLGIG-----YDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAV--  210 (407)
T ss_pred             cchhhhhccc-----ccceeeeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCc--
Confidence            4556666554     222456788899999999999999999999999999999999999999999999999876665  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC-cEEEEEecccccccchhcccccCCCcc-------------CCCCc
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIRKHQFVAVTEWSGGLY-------------VSPTV  385 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~~~~~~~~~~~~g~~~-------------~~~~~  385 (438)
                               +.+....|+|+-+.++|||+++++| .+++++. ++.++........|.|-.-             .....
T Consensus       211 ---------p~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~-~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~  280 (407)
T COG3844         211 ---------PVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVA-PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFL  280 (407)
T ss_pred             ---------ceeecccCCCeeeeeeceeccCCCCCceeEEec-cccccccccccccccCCCCcchhhhccCcCcccccee
Confidence                     4778889999999999999987666 5555555 4444444444455655220             11123


Q ss_pred             cCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          386 AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       386 ~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +|+.+-..++++..+|..+..-++.+..++...++.++.+.++..
T Consensus       281 ~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~  325 (407)
T COG3844         281 CGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEAR  325 (407)
T ss_pred             eCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhc
Confidence            444555556788889988888899999999999999999999864

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.63  E-value=3.2e-14  Score=142.29  Aligned_cols=224  Identities=18%  Similarity=0.180  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|+++++    +  ++|+|+++++.+++.++..     +|  .++|+++.+.|..+...++..|++++.+
T Consensus        62 ~~lr~~ia~~~~~~~~~----I--~~t~G~~~~l~~~~~~~~~-----~g--~~~vlv~~p~y~~~~~~~~~~g~~~~~v  128 (364)
T PRK04781         62 PGLRSALAALYGCAPEQ----L--LIGRGSDEAIDLLVRALCV-----PG--RDAVLVTPPVFGMYAVCARLQNAPLVEV  128 (364)
T ss_pred             HHHHHHHHHHhCcChHH----E--EEeCCHHHHHHHHHHHhcC-----CC--CCeEEEcCCChHHHHHHHHHcCCEEEEE
Confidence            35666788888988776    6  8999999999999987752     33  1479999999888888889999999999


Q ss_pred             eCCC---CCccCHHHHHHh-hccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCC
Q 013675          254 PVDK---EFRADVKAIKKY-INRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       254 ~~~~---~~~~d~~~Le~~-I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      |+++   ++.+|++++++. +++++++|++++|+||||.+.|.+++.++++.  +++++++|++|+.|...  ..   ..
T Consensus       129 ~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~--~~---~~  203 (364)
T PRK04781        129 PLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDV--PS---AV  203 (364)
T ss_pred             ecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCC--cc---hH
Confidence            9842   356899998654 46789999999999999999999888888775  47999999999866420  00   00


Q ss_pred             CCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH--
Q 013675          328 PPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL--  404 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~--  404 (438)
                      +..+ .... -++..++.|... .+..+|+++.. +++..........|..          +     ..++.++...+  
T Consensus       204 ~~~~-~~~~-vi~~~SfSK~~gl~GlRvGy~v~~-~~l~~~l~~~~~~~~~----------~-----~~~~~~a~~~l~~  265 (364)
T PRK04781        204 GLLA-RYDN-LAVLRTLSKAHALAAARIGSLIAN-AELIAVLRRCQAPYPV----------P-----TPCAALAEQALSA  265 (364)
T ss_pred             HHHh-hCCC-EEEEecChhhcccccceeeeeeCC-HHHHHHHHhccCCCCC----------C-----HHHHHHHHHHHhc
Confidence            0111 1112 367788999843 55678997754 4444322211111211          0     11222333333  


Q ss_pred             c-HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          405 G-QEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       405 g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      + .+...+..++..+.++.+.+.|++++++
T Consensus       266 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  295 (364)
T PRK04781        266 PALAVTARRVAEVRAERERLHAALAQLPGV  295 (364)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            2 2345566667778889999999888775

>PLN02483 serine palmitoyltransferase

Probab=99.63  E-value=4.4e-14  Score=146.26  Aligned_cols=254  Identities=11%  Similarity=0.037  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      ..+.+.+++..+... ........+......++.+.+++++|.+..        ++.++|+.++..++.++.     ++|
T Consensus       120 ~~~~~~~ai~~~g~~-~~~sr~~~g~~~~~~ele~~lA~~~g~~~a--------i~~~~G~~an~~~i~al~-----~~G  185 (489)
T PLN02483        120 CTPRVIESLKKYSAS-TCSSRVDGGTTKLHRELEELVARFVGKPAA--------IVFGMGYATNSTIIPALI-----GKG  185 (489)
T ss_pred             HHHHHHHHHHHhCCC-CCccccccCCcHHHHHHHHHHHHHhCCCcE--------EEECCHHHHHHHHHHHhC-----CCC
Confidence            345556666555322 111221122334455666779999996542        455557777877777765     377


Q ss_pred             CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc-------cCc-----E-EEEEecCCCCCcccc
Q 013675          224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN-------RNT-----V-LIVGSAPGFPHGIID  290 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~-------~~t-----~-~vv~~~~~~~tG~id  290 (438)
                         |+|++++..|+++...++..|++++.++.+     |++++++.++       ++|     + +|++....+++|.+.
T Consensus       186 ---d~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~  257 (489)
T PLN02483        186 ---GLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC  257 (489)
T ss_pred             ---CEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc
Confidence               999999999999999999999999999865     4566665553       222     4 455555558899999


Q ss_pred             CHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch
Q 013675          291 PIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF  369 (438)
Q Consensus       291 di~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~  369 (438)
                      ++++|.++|++||+++++|++++-+...   ..|.. .+.++....++|++..+++|. +++.| |+++. ++++.+...
T Consensus       258 ~l~~I~~la~~~~~~livDEa~s~g~~G---~~G~g~~~~~~v~~~~~dI~~~SfSKs-~g~~G-G~i~~-~~~li~~l~  331 (489)
T PLN02483        258 KLPEIVAVCKKYKAYVYLDEAHSIGAVG---KTGRGVCELLGVDPADVDIMMGTFTKS-FGSCG-GYIAG-SKELIQYLK  331 (489)
T ss_pred             CHHHHHHHHHHcCCEEEEECcCccCccC---CCCCchHHhcCCCcccCcEEEEecchh-cccCc-eEEEc-CHHHHHHHH
Confidence            9999999999999999999998632221   11110 111222234689999999999 56666 77654 444443321


Q ss_pred             hcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-H---HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-Q---EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       370 ~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~---~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .....+        ...++.+...++++.++++.+- .   +...+..++..++++++.+.|+++ |+.
T Consensus       332 ~~~~~~--------~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~  391 (489)
T PLN02483        332 RTCPAH--------LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFE  391 (489)
T ss_pred             HhCccc--------cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            111000        0011111122333444554432 1   223556778889999999999886 554

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.62  E-value=1.1e-13  Score=140.58  Aligned_cols=231  Identities=11%  Similarity=0.064  Sum_probs=149.8

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      ..|...++..++.+.+.+++.+..|.  ++++    |  ++|+|+++++.+.+ .+.     .+|   ++|+++.++|+.
T Consensus        70 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~----I--~it~Ga~~al~~l~-~~~-----~~g---d~V~v~~P~Y~~  134 (409)
T PRK07590         70 RGYGPEQGYDFLREKIAENDYQARGCDISADE----I--FISDGAKCDTGNIL-DIF-----GPD---NTIAVTDPVYPV  134 (409)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcCCcCChhh----E--EECCCHHHHHHHHH-Hhc-----CCC---CEEEEeCCCCcc
Confidence            34545677777888777777666554  5554    6  89999999988743 322     267   899999999999


Q ss_pred             HHHHHhhcCcE-----------EEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc
Q 013675          239 YDKAAQYFNIK-----------LWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH  302 (438)
Q Consensus       239 ~~~a~~~~Gi~-----------v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~  302 (438)
                      +...++..|.+           ++.+|+++  ++..|.+      ++++++|++++|+||||.+.+   +++|+++|++|
T Consensus       135 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~  208 (409)
T PRK07590        135 YVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN  208 (409)
T ss_pred             hHHHHHHcCCcccccccccccceeEeecccccCCcccCc------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc
Confidence            99999999987           89999874  3444432      257899999999999999977   56788889999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCc-cC-CCCccEEEeCCCCCC-CCCCCcEEEEEeccccccc-----------c
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFD-FS-VQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKH-----------Q  368 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~-~~-~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~-----------~  368 (438)
                      |+++++|.+|+.+..   +  +...+++. .. .....++..|+.|.+ .....+|+++..++ +...           .
T Consensus       209 ~~~iI~De~Y~~~~~---~--~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~-li~~~~~~~~~~~~~~  282 (409)
T PRK07590        209 GSLILFDAAYEAFIS---D--PSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKE-LKGKTSDGEGVSLNSL  282 (409)
T ss_pred             CeEEEEEccchhhcc---C--CCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHH-HhhhccccchhhhHHH
Confidence            999999999986542   1  10011111 11 112245677899985 35567899876543 3320           0


Q ss_pred             hhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          369 FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       369 ~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +......        ...    +.....+.++...+   +...+++..++..+..+.+.+.|++.
T Consensus       283 ~~~~~~~--------~~~----~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  335 (409)
T PRK07590        283 WNRRQST--------KFN----GVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESA  335 (409)
T ss_pred             HHHHHhh--------ccc----CcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0000000        000    00111333332222   34456667777788888888988875

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.62  E-value=5.9e-14  Score=142.53  Aligned_cols=228  Identities=16%  Similarity=0.072  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcE
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK  249 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~  249 (438)
                      .....++.+.+++++|.+ ..       ++.++|++|+..++..++..   .++   +.|+.....|.+....+...|.+
T Consensus        90 ~~~~~~l~~~la~~~g~~-~~-------~~~~sG~~an~~ai~~l~~~---~~~---~~i~~~~~~h~s~~~~~~~~~~~  155 (407)
T PRK09064         90 NHYHVELERELADLHGKE-AA-------LVFTSGYVSNDATLSTLAKL---IPD---CVIFSDELNHASMIEGIRRSRCE  155 (407)
T ss_pred             HHHHHHHHHHHHHHhCCC-cE-------EEECcHHHHHHHHHHHHhCC---CCC---CEEEEeCcchHHHHHHHHHcCCc
Confidence            344556667788888853 22       66677889999988877531   123   55666667798888888888888


Q ss_pred             EEEeeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh-hhhhhhcC
Q 013675          250 LWRVPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV-LPFAKKLG  324 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~-~pf~~~~g  324 (438)
                      +..++.+     |++++++.++    +++++|+++++++++|.+.|+++|.++|++||+++++|++|+.+. -|    .|
T Consensus       156 ~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~----~g  226 (407)
T PRK09064        156 KHIFRHN-----DVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGP----RG  226 (407)
T ss_pred             EEEECCC-----CHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCC----CC
Confidence            7766642     7788888876    468999999999999999999999999999999999999997322 22    11


Q ss_pred             CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH
Q 013675          325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL  404 (438)
Q Consensus       325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~  404 (438)
                      ............+|++..+++|. +++.| |+++.+ +++..........|.        ...+.+....+++.++++.+
T Consensus       227 ~g~~~~~~~~~~~div~~t~sKa-~g~~G-G~~~~~-~~~~~~l~~~~~~~~--------~t~~~~~~~~~aa~~al~~~  295 (407)
T PRK09064        227 GGIAERDGLMDRIDIIEGTLAKA-FGVMG-GYIAGS-AALVDAVRSYAPGFI--------FTTSLPPAIAAAALASIRHL  295 (407)
T ss_pred             CChHHhcCCCCCCeEEEEecchh-hhccC-ceEecC-HHHHHHHHHhCcccc--------ccCcCCHHHHHHHHHHHHHH
Confidence            10100000112458888899998 56555 666554 433322111111110        01112222334555666655


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          405 GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       405 g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ...  ....++..++++++.+.|+++ |++
T Consensus       296 ~~~--~~~~~~~~~~~~~l~~~L~~~-g~~  322 (407)
T PRK09064        296 KES--NEERERHQERAAKLKAALDAA-GIP  322 (407)
T ss_pred             hcC--HHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            332  334577888999999999875 443

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.62  E-value=3.8e-14  Score=140.13  Aligned_cols=222  Identities=22%  Similarity=0.191  Sum_probs=164.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----HH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----DK  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~~  241 (438)
                      .|....+|+    .++.|-|...        ++.+++|..|+..++.++..     +|   |+|+++...|...    .+
T Consensus        62 nPT~~~lE~----~~a~LEg~~~--------~~afsSGmaAI~~~~l~ll~-----~G---D~vl~~~~~YG~t~~~~~~  121 (396)
T COG0626          62 NPTRDALEE----ALAELEGGED--------AFAFSSGMAAISTALLALLK-----AG---DHVLLPDDLYGGTYRLFEK  121 (396)
T ss_pred             CccHHHHHH----HHHHhhCCCc--------EEEecCcHHHHHHHHHHhcC-----CC---CEEEecCCccchHHHHHHH
Confidence            455555555    5777776653        37899999999999888773     68   9999999987774    44


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      ....+|+++..++..     |.+++++++. ++|++|++..|+||+-.+.||++|+++|+++|+.++||.+++..+.   
T Consensus       122 ~l~~~gi~~~~~d~~-----~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~---  193 (396)
T COG0626         122 ILQKFGVEVTFVDPG-----DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL---  193 (396)
T ss_pred             HHHhcCeEEEEECCC-----ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccc---
Confidence            555679999988753     5667777777 5999999999999999999999999999999999999999876543   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~  398 (438)
                               .+....|+|++.-|..||+.|-..  .|+++.+++++.+..+.......|.          -.+.  -.+|
T Consensus       194 ---------q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~----------~l~p--~dA~  252 (396)
T COG0626         194 ---------QRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA----------VLSP--FDAW  252 (396)
T ss_pred             ---------cChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC----------CCCH--HHHH
Confidence                     233456899999999999654433  4655555555443322221111121          1111  1567


Q ss_pred             HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      ..+  .|.+-+.-+.++..++|..+++.|++.|.++-++|
T Consensus       253 l~l--RGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~y  290 (396)
T COG0626         253 LLL--RGLRTLALRMERHNENALKIAEFLADHPKVKKVYY  290 (396)
T ss_pred             HHH--hccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEC
Confidence            776  57788899999999999999999999998876655

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.62  E-value=5.3e-14  Score=140.59  Aligned_cols=223  Identities=13%  Similarity=0.096  Sum_probs=152.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++.++.++++    +  ++|+|+++++.+++.++.      +|   +.|+++.++|+.+...++.+|++++.+|
T Consensus        61 ~Lr~aia~~~~v~~~~----I--~it~G~~~~i~~~~~~l~------~g---~~vlv~~P~y~~~~~~~~~~g~~~~~v~  125 (360)
T PRK07392         61 ELRLALAQHHQLPPEW----I--LPGNGAAELLTWAGRELA------QL---RAVYLITPAFGDYRRALRAFGATVKELP  125 (360)
T ss_pred             HHHHHHHHHhCcChhh----E--EECCCHHHHHHHHHHHhC------CC---CeEEEECCCcHHHHHHHHHcCCeEEEEe
Confidence            4555677777888876    7  899999999998887643      45   7899999999999999999999999999


Q ss_pred             CCCCC-----ccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          255 VDKEF-----RADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       255 ~~~~~-----~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      +++++     ..|++++++.. ++++++++++|+||||.+.+.++|.++++++++ +++|++|..+...     +...+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~-----~~~~s~  198 (360)
T PRK07392        126 LPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPP-----DAEQSL  198 (360)
T ss_pred             cccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccC-----ccccch
Confidence            97533     25677777654 468899999999999999999999999999985 6779999876531     000000


Q ss_pred             Cc-cCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          330 FD-FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       330 ~~-~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      .. .....-.++..|+.|.+. .+..+|+++..+ ++.+........|.               ....+++++...+...
T Consensus       199 ~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~-~~~~~~~~~~~~~~---------------~s~~~q~~~~~~l~~~  262 (360)
T PRK07392        199 IPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHP-DRLQRWQQWRDPWP---------------VNGLAAAAAIAALADR  262 (360)
T ss_pred             HHHhhcCCCEEEEEechhhhcCCchheeeeeCCH-HHHHHHHhhCCCCC---------------CCHHHHHHHHHHhccH
Confidence            11 011112366778899954 567799987754 33322111111111               1122444444444333


Q ss_pred             HH-HHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          408 GY-LENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       408 g~-~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+ +...+...+.++++.+.|++++++.+
T Consensus       263 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  291 (360)
T PRK07392        263 DFQQQTWAWLPPAREALFQGLASLPGLTP  291 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            33 33445667778889999988877653

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.62  E-value=4.7e-14  Score=141.44  Aligned_cols=218  Identities=18%  Similarity=0.104  Sum_probs=152.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++.+++++++    +  ++|+|+++++..++.++.+     +|   +.|+++.++|+.+...++.+|.+++.+|
T Consensus        71 ~Lr~~ia~~~~~~~~~----I--~it~G~~~~l~~~~~~~~~-----~g---d~vlv~~p~y~~~~~~~~~~g~~~~~vp  136 (369)
T PRK08153         71 DLRHALAAHHGVAPEN----I--MVGEGIDGLLGLIVRLYVE-----PG---DPVVTSLGAYPTFNYHVAGFGGRLVTVP  136 (369)
T ss_pred             HHHHHHHHHhCCCHHH----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEECCCcchHHHHHHHHcCCeEEEee
Confidence            5666777788888776    6  9999999999998888653     77   8999999999999999999999999999


Q ss_pred             CCCCCccCHHHHHHhh-ccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          255 VDKEFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I-~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      .+.+ .+|++++++.+ +++++++++++|+||||.+.+.+++.++++.+  ++++++|++|+.+..   +  +. .+++.
T Consensus       137 ~~~~-~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~---~--~~-~~~~~  209 (369)
T PRK08153        137 YRDD-REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAP---A--GA-APPID  209 (369)
T ss_pred             CCCC-CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcC---c--cc-chhhh
Confidence            8755 48999998776 46789999999999999999988877777654  899999999976542   1  11 11222


Q ss_pred             cCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHH
Q 013675          332 FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGY  409 (438)
Q Consensus       332 ~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~  409 (438)
                      .. ..-.++..++.|... .+..+|+++.. +++.+........|.               ....+++++...+. .+.+
T Consensus       210 ~~-~~~~i~~~SfSK~~g~~GlRiG~~v~~-~~~~~~l~~~~~~~~---------------~s~~~q~~~~~~l~~~~~~  272 (369)
T PRK08153        210 TD-DPNVIRMRTFSKAYGLAGARVGYAIGA-PGTIKAFDKVRNHFG---------------MNRIAQAAALAALKDQAYL  272 (369)
T ss_pred             hc-CCCEEEEecchHhccCcchheeeeecC-HHHHHHHHHhhcCCC---------------CCHHHHHHHHHHhcCHHHH
Confidence            11 112466778899943 44557987764 333322111111111               01123444443343 3446


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q 013675          410 LENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++..+...+..+++.+.|++.
T Consensus       273 ~~~~~~~~~~r~~~~~~L~~~  293 (369)
T PRK08153        273 AEVVGKIAAARDRIAAIARAN  293 (369)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            667777778888888888765

>PRK05839 hypothetical protein; Provisional

Probab=99.62  E-value=7.2e-14  Score=140.34  Aligned_cols=182  Identities=17%  Similarity=0.172  Sum_probs=132.9

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      .|....+..++.+.+.+++.+.+|.  ++++    |  ++|+|+++++..++.++..   ..+|   +.|+++.++|+.+
T Consensus        55 ~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~----I--~it~G~~~al~~~~~~~~~---~~~g---d~vlv~~P~y~~~  122 (374)
T PRK05839         55 KYPKSAGEESLREAQRGFFKRRFKIELKENE----L--IPTFGTREVLFNFPQFVLF---DKQN---PTIAYPNPFYQIY  122 (374)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCcce----E--EEecCcHHHHHHHHHHHhc---CCCC---CEEEECCCCchhh
Confidence            3444456677888888899888884  5554    6  8999999999888776531   0245   8899999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ...++..|++++.+|+++  ++.+|+.+.+  + ++++++++++|+||||.+.+   +++|.++|+++|+++++|.+|+.
T Consensus       123 ~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~  199 (374)
T PRK05839        123 EGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSE  199 (374)
T ss_pred             HHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhh
Confidence            999999999999999975  4566655433  3 46899999999999999976   56788889999999999999986


Q ss_pred             hhhhhhhhcCCCCCCC-cc------CCCCccEEEeCCCCC-CCCCCCcEEEEEeccccc
Q 013675          315 FVLPFAKKLGYPIPPF-DF------SVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIR  365 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~-~~------~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~  365 (438)
                      +..   +.   +.+.+ ..      ...+-.++..+..|. +.++..+|+++.. +++.
T Consensus       200 ~~~---~~---~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~-~~~~  251 (374)
T PRK05839        200 IYE---NT---PPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGD-ASIL  251 (374)
T ss_pred             ccc---CC---CCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecC-HHHH
Confidence            531   00   01111 10      011224677888996 5677789997764 4444

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.61  E-value=8.2e-14  Score=135.80  Aligned_cols=219  Identities=22%  Similarity=0.207  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHH--------
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAA--------  243 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~--------  243 (438)
                      ..++.+.++++.+ ..+.    +  .|+++||||+..|++.+|.+..   +..+.+||....+ |--..-+.        
T Consensus        86 ~~~la~~L~~~s~-~~d~----v--ff~NSGaEA~EaAiKlARk~~~---~~~k~~Iia~~nsFHGRT~galS~t~~~ky  155 (404)
T COG4992          86 QAELAEKLVELSP-FADR----V--FFCNSGAEANEAALKLARKYTG---DPEKSKIIAFENSFHGRTLGALSATGQPKY  155 (404)
T ss_pred             HHHHHHHHHhhCc-cccE----E--EEcCCcHHHHHHHHHHHHHHcC---CCCCcEEEEEcCCcCCccceeeeccCChhh
Confidence            4456667888886 3333    5  8999999999999999998754   2234577765554 32211111        


Q ss_pred             -hhcC---cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccch
Q 013675          244 -QYFN---IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       244 -~~~G---i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                       +.++   -.++.+|.+     |+++++++|+++|++|++...+-..|++-+    ++++.++|++||+.++.|+++.|+
T Consensus       156 ~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~  230 (404)
T COG4992         156 RKGFGPLLPGFRHVPFN-----DIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGL  230 (404)
T ss_pred             ccCCCCCCCCceecCCC-----CHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCC
Confidence             1111   145666665     899999999999999999999998998865    889999999999999999999886


Q ss_pred             hhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      ..     .|.   -|.+...||  |+++..  |.+.++..+|.++.+ +....             ..++...||..|..
T Consensus       231 GR-----TGk---~fA~e~~gV~PDI~tla--K~LgGG~PigA~la~-~~~~~-------------~~~~G~HgSTfGGN  286 (404)
T COG4992         231 GR-----TGK---LFAYEHYGVEPDILTLA--KALGGGFPIGAMLAT-EEIAS-------------AFTPGDHGSTFGGN  286 (404)
T ss_pred             Cc-----cch---HHHHHHhCCCCCEEEee--ccccCCccceeeEEc-hhhhh-------------cCCCCcccCCCCcC
Confidence            53     222   133333354  888765  887777888998887 32221             13455667777766


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..++.++...+..-.-++..++..+...+|.+.|+++
T Consensus       287 pLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l  323 (404)
T COG4992         287 PLACAVALAVLEVLLEEGLLENVREKGEYLLQRLREL  323 (404)
T ss_pred             HHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence            5566655544433333455666777788888888764

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.61  E-value=3.6e-14  Score=146.44  Aligned_cols=186  Identities=12%  Similarity=0.149  Sum_probs=133.4

Q ss_pred             cccchhHHHHHHHHHHHHH-HHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          163 LDIFQSVARFEAEVIAMTA-ALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a-~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      |...++..++.+++++... +..+.  ++.. ..+|  ++|+|+++|+..++.++.......+|   |+|+++.+.|+.+
T Consensus       130 Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~-~~~I--~vT~Ga~~al~~~~~aL~~~~ll~pG---D~Vlv~~P~y~~Y  203 (527)
T PRK09275        130 YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKG-EFDL--FAVEGGTAAMCYIFDSLKENGLLKAG---DKIALMTPIFTPY  203 (527)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhhccCCCCCCC-cCeE--EEeCCHHHHHHHHHHHHhhhhcCCCC---CEEEEeCCChHHH
Confidence            5566777788888777544 33322  1210 0126  89999999999998875322222478   9999999999999


Q ss_pred             HHHHhhcCc--EEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHH--cCCeEEEec
Q 013675          240 DKAAQYFNI--KLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALS--HGTCLHVDL  310 (438)
Q Consensus       240 ~~a~~~~Gi--~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~--~~i~lhVD~  310 (438)
                      ...++..|.  +++.++.++  ++.+|+++++++++++|++|++++|+||||.+.+   +++|+++|++  +++++++|.
T Consensus       204 ~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DE  283 (527)
T PRK09275        204 LEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDD  283 (527)
T ss_pred             HHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECC
Confidence            999988864  555565543  5899999999999999999999999999999987   7788888964  599999999


Q ss_pred             cccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecc
Q 013675          311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNR  362 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~  362 (438)
                      +|+.+.-.|       .+.... ...-.++..|..|.. ..+..+|+++..++
T Consensus       284 vY~~f~~~~-------~s~~~~-~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~  328 (527)
T PRK09275        284 VYGTFVDDF-------RSLFAV-LPYNTILVYSFSKYFGATGWRLGVIALHED  328 (527)
T ss_pred             CChhhcccc-------cCHHHh-CCCCEEEEeehhhhccCcHhHHhhhhcCch
Confidence            998754211       101111 122356777889994 24455899877654

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.61  E-value=6.2e-14  Score=138.51  Aligned_cols=218  Identities=15%  Similarity=0.084  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++.+|.++.+    |  ++|+|+++++.+++.. .     .+|    +|+++.++|+.+..+++..|++++.
T Consensus        42 ~~~lr~~ia~~~~~~~~~----I--~it~Gs~~~l~~~~~~-~-----~~~----~vv~~~P~y~~y~~~~~~~G~~v~~  105 (332)
T PRK06425         42 YTDIEDQIKIYTQGLKIK----V--LIGPGLTHFIYRLLSY-I-----NVG----NIIIVEPNFNEYKGYAFTHGIRISA  105 (332)
T ss_pred             HHHHHHHHHHHhCCCcce----E--EECCCHHHHHHHHHHH-h-----CCC----cEEEeCCChHHHHHHHHHcCCeEEE
Confidence            346777899999998776    6  8999999999988753 2     133    5777799999999999999999999


Q ss_pred             eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      +|+++ ...|.+.+++   .+++++++++|+||||.+.+   +++|.++|+++|+++++|++|+.+...     +. .+.
T Consensus       106 vp~~~-~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~-----~~-~~~  175 (332)
T PRK06425        106 LPFNL-INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPN-----RA-EED  175 (332)
T ss_pred             EeCCc-ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccc-----cc-hhH
Confidence            99975 4456666653   37889999999999999977   567777889999999999999866421     00 000


Q ss_pred             Ccc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          330 FDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       330 ~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      ... ....-.++..++.|... .+..+|+++.. +++.+........|...              .+ ++ .++.....+
T Consensus       176 ~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~-~~li~~l~~~~~~~~~~--------------~~-~~-~~l~~~~~~  238 (332)
T PRK06425        176 VLLNRSYGNVIIGRSLTKILGIPSLRIGYIATD-DYNMKISRKITEPWSVC--------------DP-AI-DFIRSIDLD  238 (332)
T ss_pred             HHHhccCCCEEEEeecHHhcCCchhhheeeecC-HHHHHHHHHcCCCCccC--------------HH-HH-HHHHHhhhH
Confidence            000 01122467778899844 44568997765 44433221111112110              11 11 122222222


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          408 G-YLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       408 g-~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      . .++..+...+..+++.+.|+++ +++
T Consensus       239 ~~~~~~~~~~~~~r~~l~~~L~~~-g~~  265 (332)
T PRK06425        239 YVAKHSLDIMENERSYLINNLEAM-GFR  265 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence            3 2456677778888888888876 443

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.60  E-value=5.2e-14  Score=145.09  Aligned_cols=178  Identities=15%  Similarity=0.142  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHhCC---CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          170 ARFEAEVIAMTAALLGN---KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~---~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      ...++.+.+++.+.++.   ++++  .++  ++|+|+++|+..++.++.......+|   |+|+++.+.|+.+...++..
T Consensus       132 ~~~e~iv~~y~~~~~~~~~~~~~~--~~V--~it~Gat~al~~~~~~l~~~~ll~pG---D~Vlv~~P~y~~y~~~~~l~  204 (521)
T TIGR03801       132 PHSEKIVHQYLIQEMCGNKPPPGE--FDL--FAVEGGTAAMCYIFDSLKANELLKKG---DKIALMTPIFTPYLEIPELP  204 (521)
T ss_pred             HHHHHHHHHHHHhhccCCCCCCCc--CeE--EEeCCHHHHHHHHHHHHhHhhcCCCC---CEEEEeCCCcHHHHHHHHHh
Confidence            33444444566655443   2220  026  89999999999998875332223477   99999999999999998876


Q ss_pred             --CcEEEEeeCCC--C-----CccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc--CCeEEEeccc
Q 013675          247 --NIKLWRVPVDK--E-----FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH--GTCLHVDLCL  312 (438)
Q Consensus       247 --Gi~v~~v~~~~--~-----~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~--~i~lhVD~a~  312 (438)
                        |++++.+++++  +     +.+|.++++++++++|+++++++|+||||.+.+   +++|+++|+++  ++++++|.+|
T Consensus       205 ~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY  284 (521)
T TIGR03801       205 RYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVY  284 (521)
T ss_pred             cCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCc
Confidence              67888888763  2     789999999999999999999999999999977   67888889986  8999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecc
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNR  362 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~  362 (438)
                      +.+.-.|.       +.... ...-.++..|..|.. ..+..+|+++..++
T Consensus       285 ~~f~~~~~-------sl~~~-~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~  327 (521)
T TIGR03801       285 GTFVDDFR-------SLFAE-LPYNTIGVYSFSKYFGATGWRLGTIALHKD  327 (521)
T ss_pred             hhhccccc-------chhhh-CCCCEEEEEcchhhccCchhhhhhhhcCch
Confidence            87653211       01111 122357777889984 34566999887654

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN02452 phosphoserine transaminase

Probab=99.60  E-value=2.8e-14  Score=141.84  Aligned_cols=236  Identities=14%  Similarity=0.083  Sum_probs=169.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~  240 (438)
                      ...++.+.++.+++++.+.++++.|.+..    +-+++.|||.++.+++..+..     +|   +++++-.+...+  +.
T Consensus        44 sHRs~~f~~i~~~~~~~L~~l~~~p~~y~----v~~l~Gsgt~~~ea~~~nl~~-----~~---~~~l~~~~G~fg~r~~  111 (365)
T PLN02452         44 SHRGKEFLSIIQKAEADLRELLDIPDNYE----VLFLQGGASTQFAAIPLNLCK-----PG---DKADFVVTGSWSKKAA  111 (365)
T ss_pred             CCCchHHHHHHHHHHHHHHHHhCCCCCce----EEEEeCccHHHHHHHHHhcCC-----CC---CeEEEEECCHHHHHHH
Confidence            34578889999999999999999865421    336679999999998888753     45   566666666555  67


Q ss_pred             HHHhhcCcEEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCcc-ccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675          241 KAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGI-IDPIQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~-iddi~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      +.++.+|...+.....+   ....|+++++  .+++...|.+++.+|.+|+ +.|++++.+      ++++||++++.+.
T Consensus       112 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~  183 (365)
T PLN02452        112 KEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLS  183 (365)
T ss_pred             HHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccC
Confidence            78888887444332222   2246777653  2456889999999999999 588888753      8999999965333


Q ss_pred             hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh--cccccCCCccCCCCccCCCCCchH
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV--AVTEWSGGLYVSPTVAGSRPGGLI  394 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~--~~~~~~g~~~~~~~~~gsr~~~~i  394 (438)
                      .           ++|....++|+  .++||. ++|+|.|++++|++.+.+....  ...+|... ....+..++.+...+
T Consensus       184 ~-----------pidv~~~~v~~--~saqK~-lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~-~~~~s~~~TP~v~~i  248 (365)
T PLN02452        184 K-----------PVDVSKYGVIY--AGAQKN-VGPSGVTIVIIRKDLIGNARPITPGMLDYKIH-AENDSLYNTPPCFGI  248 (365)
T ss_pred             c-----------ccCHHHcCEEE--Eecccc-cCCCCeEEEEEcHHHHhhcccCCCchhhHHHH-HhcCCccCChhHHHH
Confidence            3           57777778766  599998 5899999999987655332110  00111100 001133356666778


Q ss_pred             HHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          395 AGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       395 a~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      +++..+++++-++ |++.+.++..++++++++.|++.+|+
T Consensus       249 ~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~  288 (365)
T PLN02452        249 YMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF  288 (365)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            8999999999776 89999999999999999999998876

>PLN02672 methionine S-methyltransferase

Probab=99.60  E-value=2.9e-13  Score=148.27  Aligned_cols=239  Identities=13%  Similarity=0.154  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      ++...+++++++.+|++.+. ..++  ++|+|+++++..++.++.+     +|   |+|+++.++|+.+..+++..|+++
T Consensus       734 dlr~aLa~~la~~~Gv~~d~-~e~I--Ivt~Gs~elL~lll~aLl~-----pG---D~VLVp~PtY~~Y~~~a~~~Ga~v  802 (1082)
T PLN02672        734 DPRPSILQFIKSNYGFPTDS-CTEF--VYGDTSLALFNKLVLCCVQ-----EG---GTLCFPAGSNGTYVSAAKFLKANF  802 (1082)
T ss_pred             HHHHHHHHHHHHHhCcCCCC-CCEE--EEeCCHHHHHHHHHHHHcC-----CC---CEEEEeCCChHHHHHHHHHcCCEE
Confidence            45678899999999987541 0125  7889988888888888764     77   999999999999999999999999


Q ss_pred             EEeeCCC--CCccCHHHHHHhhcc-CcEEEEEecCC-CCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          251 WRVPVDK--EFRADVKAIKKYINR-NTVLIVGSAPG-FPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       251 ~~v~~~~--~~~~d~~~Le~~I~~-~t~~vv~~~~~-~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      +.+|+++  ++.+|++++++++++ ++.++++++|+ ||||.+.+   +++|.++|++||+++++|.+|+.+...- ...
T Consensus       803 v~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~-~~~  881 (1082)
T PLN02672        803 RRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDT-SGW  881 (1082)
T ss_pred             EEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCC-CCC
Confidence            9999974  688999999999976 45689999998 99999966   6788889999999999999997654310 000


Q ss_pred             C-CCCCCCccCCC-----CccEEEeCCC-CCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675          324 G-YPIPPFDFSVQ-----GVTSISVDVH-KYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       324 g-~~~p~~~~~~~-----gvdsis~s~h-K~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                      . ...++.-....     ..-++..+.. |++.++..+|+++..++++.+...... ..     ..+      ......+
T Consensus       882 s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~-~~-----s~~------~~~~q~A  949 (1082)
T PLN02672        882 GGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAP-GL-----SRP------HSTLKYT  949 (1082)
T ss_pred             cccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhh-hh-----cCC------CcHHHHH
Confidence            0 00000000000     1124455777 555666779998876554443221110 00     000      0011112


Q ss_pred             HHHHHHHHc------HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          397 AWAALMSLG------QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       397 ~~aal~~~g------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +.+++..+.      .+.+.+..+...+..+++.+.|++. |++
T Consensus       950 aaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~  992 (1082)
T PLN02672        950 IKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWD  992 (1082)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            223232121      2345566677888889999999875 443

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.60  E-value=1.7e-13  Score=138.35  Aligned_cols=221  Identities=15%  Similarity=0.136  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ...++.+.+++++|.+..        ++.++|+.++..++.++.     ++|   |+|++++..|+++...+...+.+++
T Consensus        44 ~~~~LE~~lA~~~g~e~a--------l~~~sG~~a~~~~i~~l~-----~~G---D~Vl~~~~~h~s~~~~~~l~~~~~~  107 (392)
T PLN03227         44 AHLELEQCMAEFLGTESA--------ILYSDGASTTSSTVAAFA-----KRG---DLLVVDRGVNEALLVGVSLSRANVR  107 (392)
T ss_pred             HHHHHHHHHHHHhCCCcE--------EEecCcHHHHHHHHHHhC-----CCC---CEEEEeccccHHHHHHHHHcCCeEE
Confidence            455566679999998632        566667777777777764     378   9999999999999988888888888


Q ss_pred             EeeCCCCCccCHHHHHHhhc-----------cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh---
Q 013675          252 RVPVDKEFRADVKAIKKYIN-----------RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL---  317 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~-----------~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~---  317 (438)
                      .++.++  .-|++.+.+.+.           ++|++|++..+.+++|.+.|+++|.++|++||+++++|++++....   
T Consensus       108 ~~~~~d--~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~  185 (392)
T PLN03227        108 WFRHND--MKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKS  185 (392)
T ss_pred             EeCCCC--HHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCC
Confidence            777642  113333333442           3588999999999999999999999999999999999999862211   


Q ss_pred             --hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675          318 --PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       318 --pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                        ...+..|  +++    ..++|+++.+.+|+ ++|.| |+++.+ +++.+.....   ..+.     +..++-+....+
T Consensus       186 G~g~~~~~g--~~p----~~~~Div~~slsk~-~g~~g-g~v~~~-~~~~~~~~~~---~~~~-----~~~~~~~p~~~~  248 (392)
T PLN03227        186 GRGSLEHAG--LKP----MVHAEIVTFSLENA-FGSVG-GMTVGS-EEVVDHQRLS---GSGY-----CFSASAPPFLAK  248 (392)
T ss_pred             CCcHHHHcC--CCC----CCCceEEEeechhh-hhccC-cEEecC-HHHHHHHHHh---CcCc-----cccCCCCHHHHH
Confidence              0111112  111    34789999999998 56665 454444 3333211100   0011     111111111122


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      +..+++...  ...++..++..++++++++.|++
T Consensus       249 aa~~al~~~--~~~~~~~~~l~~~~~~l~~~L~~  280 (392)
T PLN03227        249 ADATATAGE--LAGPQLLNRLHDSIANLYSTLTN  280 (392)
T ss_pred             HHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHh
Confidence            222333222  12356778888999999999974

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.59  E-value=1.3e-15  Score=146.44  Aligned_cols=232  Identities=23%  Similarity=0.274  Sum_probs=151.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      |...+.+.++++    .+++++|.+..        +|+.+||.||.+++++...     ++   +.|++..++|..+.+.
T Consensus        25 Yg~D~~~~~l~~----~i~~l~g~e~a--------~f~~sGT~An~~al~~~~~-----~~---~~vi~~~~aHi~~~E~   84 (290)
T PF01212_consen   25 YGEDPTTARLEE----RIAELFGKEAA--------LFVPSGTMANQLALRAHLR-----PG---ESVICADTAHIHFDET   84 (290)
T ss_dssp             TTSSHHHHHHHH----HHHHHHTSSEE--------EEESSHHHHHHHHHHHHHH-----TT---EEEEEETTEHHHHSST
T ss_pred             cCCChhHHHHHH----HHHHHcCCCEE--------EEeCCCChHHHHHHHHHHh-----cC---Cceeccccceeeeecc
Confidence            444555555554    68899999742        7999999999999999873     56   7899999999876543


Q ss_pred             ---HhhcCcEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCC-ccccC---HHHHHHHHHHcCCeEEEe
Q 013675          243 ---AQYFNIKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPH-GIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       243 ---~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~t-G~idd---i~~I~~la~~~~i~lhVD  309 (438)
                         ....|++++.++.++++.+|+++|++.+++      ++.+|+++++++.. |++.+   +++|.++||++|+++|.|
T Consensus        85 ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmD  164 (290)
T PF01212_consen   85 GAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMD  164 (290)
T ss_dssp             THHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEE
T ss_pred             chhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEe
Confidence               245699999999876699999999999975      47899999998853 77654   778899999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      |+--+-...   ..+.   ....-..++|+++++++|.|.+|.| ++++.++ +......... ...|+...       .
T Consensus       165 GARl~~a~~---~~~~---~~~e~~~~~D~v~~~~tK~~g~~~G-avl~~~~-~~i~~~~~~~-k~~gg~~~-------~  228 (290)
T PF01212_consen  165 GARLANAAA---ALGV---SLAEIAAGADSVSFGGTKNGGAPGG-AVLAGNK-EFIAKARRQR-KRLGGGMR-------Q  228 (290)
T ss_dssp             ETTHHHHHC---HHHH---HHHHHHTTSSEEEEETTSTT-SSSE-EEEEESH-HHHHHHHHHH-HHHTHHHH-------H
T ss_pred             hhhHHHhhh---cccc---cHHHHhhhCCEEEEEEEcccccccc-eEEEech-HHHHHHHHHH-HHhccCee-------e
Confidence            995322221   0111   1112236789999999999777765 5555554 4322211111 01121100       0


Q ss_pred             CCchHHH--HH--HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          390 PGGLIAG--AW--AALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       390 ~~~~ia~--~~--aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      .| .+++  ++  .++..  .+...+...+..+++++|++.|+.+++.
T Consensus       229 ~G-~~~a~~~~~~~~l~~--l~~~~~~~~~~~~~A~~La~~l~~~~~~  273 (290)
T PF01212_consen  229 AG-VLAAAELYQFAALRA--LELWLERARHANAMAKRLAAGLEALGGV  273 (290)
T ss_dssp             TT-HHHHHHHHHHHHHCH--EECSHHHHHCHHHHHHCHHHCHHEECEE
T ss_pred             cc-eeeeechhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            11 1222  11  22211  1223667788889999999999988653

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.59  E-value=1.1e-13  Score=138.71  Aligned_cols=237  Identities=15%  Similarity=0.066  Sum_probs=151.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      |..+|.+.++|++    +++++|.+.      +  +.|++||.|+.++.....     ++|   ++|  +...|..-.++
T Consensus        74 Yagd~s~~~LE~~----vAe~lG~e~------a--V~v~sGTaAl~ll~~l~v-----~pG---d~V--p~n~~f~Tt~a  131 (460)
T PRK13237         74 YAGSRNFYHLEET----VQEYYGFKH------V--VPTHQGRGAENLLSRIAI-----KPG---QYV--PGNMYFTTTRY  131 (460)
T ss_pred             hcCCCcHHHHHHH----HHHHHCCCe------E--EEeCCHHHHHHHHHHhCC-----CCc---CEE--CCccchHhhHH
Confidence            5567788888875    778889874      2  899999999998533221     356   643  77777766665


Q ss_pred             -HhhcCcEEEEeeCC---------C-CCccCHHHHHHhhccC----cEEEEEecCCCCC-ccc---cCHHHHHHHHHHcC
Q 013675          243 -AQYFNIKLWRVPVD---------K-EFRADVKAIKKYINRN----TVLIVGSAPGFPH-GII---DPIQELGELALSHG  303 (438)
Q Consensus       243 -~~~~Gi~v~~v~~~---------~-~~~~d~~~Le~~I~~~----t~~vv~~~~~~~t-G~i---ddi~~I~~la~~~~  303 (438)
                       ....|...+-++.+         + +|.+|+++++++|+++    +.++.+..++|.. |..   +++++|.++|++||
T Consensus       132 hI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~G  211 (460)
T PRK13237        132 HQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHG  211 (460)
T ss_pred             HHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcC
Confidence             67778755544311         3 7899999999999864    4466777777777 444   47899999999999


Q ss_pred             CeEEEeccccchhhhhhhh--cCCCCCCC----ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC
Q 013675          304 TCLHVDLCLGGFVLPFAKK--LGYPIPPF----DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG  377 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~--~g~~~p~~----~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g  377 (438)
                      +++|.|+|......-|.+.  .|+.-.+.    .......|.+++|+||.+.+|.| |+++++|+++.+........|.|
T Consensus       212 l~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~eG  290 (460)
T PRK13237        212 IKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVYEG  290 (460)
T ss_pred             CEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhccccCC
Confidence            9999999975332212211  12100000    00122469999999999888875 88899998877654433333333


Q ss_pred             CccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       378 ~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..     ..|.-.+--+.++..++...-..   +..++....+++|.+.|.+.
T Consensus       291 ~~-----tygg~~grd~~alAvgl~E~~~~---~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        291 MP-----SYGGMAGRDMEAMAIGIEESVQY---EYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             Cc-----CCCChhhhHHHHHHhHHHhhchH---HHHHHHHHHHHHHHHHHHHC
Confidence            21     11112221233444444322111   66677778889999998764

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.59  E-value=1.2e-13  Score=137.81  Aligned_cols=217  Identities=18%  Similarity=0.183  Sum_probs=148.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++.++.++++    +  ++|+|+++++.++++++.+     +|   ++|+++.++|..+...+...|.+++.+|
T Consensus        69 ~lr~~ia~~~~~~~~~----I--~it~G~~~al~~~~~~~~~-----~g---d~V~v~~P~y~~~~~~~~~~g~~~~~~~  134 (357)
T PRK14809         69 DLTAALADRWDVSPEQ----V--WLANGGDGALDYLARAMLD-----PG---DTVLVPDPGFAYYGMSARYHHGEVREYP  134 (357)
T ss_pred             HHHHHHHHHhCCCcce----E--EECCCHHHHHHHHHHHhcC-----CC---CEEEEeCCChHHHHHHHHHcCCeEEEEe
Confidence            4566677778888776    6  8999999999999888753     77   8999999999988888899999999999


Q ss_pred             CCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          255 VDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       255 ~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      ++.  ++.+|++++++.+ ++++++++++|+||||.+.+.+++.++++..  ++++++|++|+.+...     +...+..
T Consensus       135 l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~-----~~~~~~~  208 (357)
T PRK14809        135 VSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAER-----PSAVALV  208 (357)
T ss_pred             cccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCC-----chhHHHH
Confidence            864  5678888888776 4688999999999999999988777777654  7899999999865421     0000001


Q ss_pred             ccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHH
Q 013675          331 DFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g  408 (438)
                      +  ...-.++..++.|.+. .+..+|+++..+ ++.+........|.               ....++.+++..+. .+.
T Consensus       209 ~--~~~~vi~~~SfSK~~~~~GlRiG~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~a~~~l~~~~~  270 (357)
T PRK14809        209 E--ERDDVAVLRTFSKAYGLAGLRLGYAVVPE-EWADAYARVNTPFA---------------ASELACRAGLAALDDDEH  270 (357)
T ss_pred             h--hCCCEEEEecchhHhcCcchhheeeecCH-HHHHHHHHhCCCCC---------------CCHHHHHHHHHHhCCHHH
Confidence            1  1112356678889953 445689987754 33332111111110               01123444444443 344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 013675          409 YLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      +++..+...+..+++.+.|..
T Consensus       271 ~~~~~~~~~~~r~~l~~~L~~  291 (357)
T PRK14809        271 VERTVETARWAREYIREELDA  291 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            556666666777777777754

>PRK10534 L-threonine aldolase; Provisional

Probab=99.59  E-value=8.6e-14  Score=137.44  Aligned_cols=228  Identities=20%  Similarity=0.145  Sum_probs=139.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      |...+...++++    .+++++|.++.        +++.||++++..++.+..     .+|   ++|+++.+.|.....+
T Consensus        30 Y~~~~~~~~L~~----~la~~~g~~~~--------~v~~~g~~a~~~~l~~~~-----~~g---d~vi~~~~~~~~~~~~   89 (333)
T PRK10534         30 YGDDPTVNALQD----YAAELSGKEAA--------LFLPTGTQANLVALLSHC-----ERG---EEYIVGQAAHNYLYEA   89 (333)
T ss_pred             cCCCHHHHHHHH----HHHHHhCCCeE--------EEeCchHHHHHHHHHHhc-----CCC---CeeEEechhhhhHhcC
Confidence            334455555555    57888898642        688999999998888764     367   8899988888543322


Q ss_pred             --HhhcC-cEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHH---HHHHHHHHcCCeEEEec
Q 013675          243 --AQYFN-IKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQ---ELGELALSHGTCLHVDL  310 (438)
Q Consensus       243 --~~~~G-i~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~---~I~~la~~~~i~lhVD~  310 (438)
                        +...| ++++.+++++++.+|+++|++++++      +|++|++++|+  +|.+.|.+   +|.++|+++++++++|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDE  167 (333)
T PRK10534         90 GGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDG  167 (333)
T ss_pred             CchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeH
Confidence              34444 7888888888899999999999976      58899998765  59997765   55678899999999999


Q ss_pred             cccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675          311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~  390 (438)
                      ||.-+...   ..+.   .........|.++++++|....+  .|+.++.++++.+........|.++.         ..
T Consensus       168 A~~~~~~~---~~~~---~~~~~~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~~~~~~~~~~---------~~  230 (333)
T PRK10534        168 ARIFNAVV---AYGC---ELKEITQYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARRWRKMTGGGM---------RQ  230 (333)
T ss_pred             HHHHHHHH---HcCC---CHHHHHhcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHHHHHHhCCch---------hh
Confidence            97521110   0011   11101122355566789974434  56444556665443222111111110         00


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+.  .+.+++..+  +...+..++..+.++++.+.|+++ |++
T Consensus       231 ~~~--~~a~~~~~l--~~~~~~~~~~~~~r~~l~~~L~~~-g~~  269 (333)
T PRK10534        231 AGI--LAAAGLYAL--KHNVARLQEDHDNAAWLAEQLREA-GAD  269 (333)
T ss_pred             HHH--HHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence            111  222233222  112344455566778899999876 554

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.58  E-value=4.4e-13  Score=132.85  Aligned_cols=165  Identities=18%  Similarity=0.211  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec---CCCcCcHHHHHhh
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP---VSAHSAYDKAAQY  245 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~---~~~h~s~~~a~~~  245 (438)
                      ..++.+++.+.+++++|.++++    +  ++++||++||..++.++.+     +|   ++|+++   .+.|+++...++.
T Consensus        52 ~~~~~~~Le~~lA~~~g~~~e~----i--lv~~gg~~a~~~~~~al~~-----~g---d~Vli~~~d~p~~~s~~~~~~l  117 (346)
T TIGR03576        52 PAIFEEKVQELGREHLGGPEEK----I--LVFNRTSSAILATILALEP-----PG---RKVVHYLPEKPAHPSIPRSCKL  117 (346)
T ss_pred             CHHHHHHHHHHHHHHcCCCcce----E--EEECCHHHHHHHHHHHhCC-----CC---CEEEECCCCCCCchhHHHHHHH
Confidence            3477888888999999997765    5  8999999999999998863     67   889864   4699999999999


Q ss_pred             cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          246 FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       246 ~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      .|.++...       .|+++++.  .+++++|+++ +++++|.+   .|+++|+++|+++|++++||++|+.++...   
T Consensus       118 ~ga~~~~~-------~~l~~l~~--~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~---  184 (346)
T TIGR03576       118 AGAEYFES-------DELSELKK--IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRL---  184 (346)
T ss_pred             cCCEEecc-------CCHHHHhh--CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCcccccccc---
Confidence            99986432       14555543  3567777775 46889998   789999999999999999999998665320   


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccc
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRK  366 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~  366 (438)
                      .|. . +  ....++|++..+++|++.|+. .|+++.+ +++.+
T Consensus       185 ~~~-~-~--~~~~~~divv~s~SKalaG~r-~G~v~~~-~~li~  222 (346)
T TIGR03576       185 YGQ-P-P--ALDLGADLVVTSTDKLMDGPR-GGLLAGR-KELVD  222 (346)
T ss_pred             CCC-C-C--HHHcCCcEEEeccchhccccc-eEEEEeC-HHHHH
Confidence            111 0 1  112257888999999743554 5876655 44443

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.58  E-value=4.5e-13  Score=136.04  Aligned_cols=223  Identities=15%  Similarity=0.095  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ...++.+.+++++|.+.      .  +++++|++|+..++.++...   .+|   +.|+.....|.++..+++..|.+++
T Consensus        91 ~~~~le~~la~~~g~~~------~--~~~~SG~~An~~ai~~l~~~---~~g---~~I~~~~~~H~s~~~~~~~~g~~~~  156 (406)
T PRK13393         91 YHVLLEAELADLHGKEA------A--LLFTSGYVSNWAALSTLGSR---LPG---CVILSDELNHASMIEGIRHSRAEKR  156 (406)
T ss_pred             HHHHHHHHHHHHhCCCc------E--EEeCCcHHHHHHHHHHhhcC---CCC---CEEEEccchhHHHHHHHHHcCCeEE
Confidence            45566678999998642      2  66667788999999865421   134   6777888899999999988898888


Q ss_pred             EeeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh-hhhhhhcCCC
Q 013675          252 RVPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV-LPFAKKLGYP  326 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~-~pf~~~~g~~  326 (438)
                      .++..     |++++++.++    +++++|+++++++++|.+.|+++|.++|+++|+++++|++++.++ -|.-  .|. 
T Consensus       157 ~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G--~g~-  228 (406)
T PRK13393        157 IFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRG--GGI-  228 (406)
T ss_pred             EeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCC--Cch-
Confidence            77743     6777777764    357899999999999999999999999999999999999987332 2210  010 


Q ss_pred             CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          327 IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       327 ~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                      ....+ ....+|++..+..|. ++..| |+++. ++++..........|        ...++.+....+++.++++.+..
T Consensus       229 ~~~~~-~~~~~~i~~~tlsKa-~g~~G-G~~~~-~~~~~~~l~~~~~~~--------~~t~~~~p~~~aa~~aaL~~~~~  296 (406)
T PRK13393        229 AEREG-LADRLTIIEGTLAKA-FGVMG-GYITG-SAALCDFIRSFASGF--------IFTTSLPPAVAAGALASVRHLKA  296 (406)
T ss_pred             hhhcC-CCCCCeEEEEeCchh-hcccC-ceeeC-CHHHHHHHHHhCcCc--------eecCccCHHHHHHHHHHHHHHhh
Confidence            00011 112357887889999 45444 66543 344332211110000        01112222334566677765533


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .+  ...++..++++++.+.|+++
T Consensus       297 ~~--~~~~~~~~~~~~l~~~L~~~  318 (406)
T PRK13393        297 SS--AERERHQDRVARLRARLDKA  318 (406)
T ss_pred             CH--HHHHHHHHHHHHHHHHHHHc
Confidence            32  22355677888999988764

>PRK08637 hypothetical protein; Provisional

Probab=99.57  E-value=4.6e-13  Score=135.15  Aligned_cols=201  Identities=11%  Similarity=0.053  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR  222 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~  222 (438)
                      ....+.+++........+.|...+|..++.+.+.+++.+..+ .++.+ -.++  ++|+|+++++.+++.++.+     +
T Consensus        21 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~-~~~I--~it~G~~~al~~~~~~l~~-----~   92 (388)
T PRK08637         21 YLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKK-MSLP--IVTNALTHGLSLVADLFVD-----Q   92 (388)
T ss_pred             hHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccc-ccee--eEccchHHHHHHHHHHhcC-----C
Confidence            445555555543333344565667777777777666665432 22210 0125  8999999999999988763     6


Q ss_pred             CCCCCeEEecCCCcCcHHHHH-hhcCcEEEEeeCC-CCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccC---HH
Q 013675          223 GITRPEMIIPVSAHSAYDKAA-QYFNIKLWRVPVD-KEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP---IQ  293 (438)
Q Consensus       223 G~~~~~Viv~~~~h~s~~~a~-~~~Gi~v~~v~~~-~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd---i~  293 (438)
                      |   |+|+++.++|+.+..++ ...|++++.+|++ +++.+|+++++++++    +.+.++++++|+||||.+.+   ++
T Consensus        93 g---d~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~  169 (388)
T PRK08637         93 G---DTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEAT  169 (388)
T ss_pred             C---CEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHH
Confidence            7   89999999999999875 4689999999984 566799999999987    45667888999999999876   56


Q ss_pred             HHHHHHHH-----cCCeEEEeccccchhhhhhhhcCCCCCCC-cc---CCCCccEE-EeCCCCC-CCCCCCcEEEEEe
Q 013675          294 ELGELALS-----HGTCLHVDLCLGGFVLPFAKKLGYPIPPF-DF---SVQGVTSI-SVDVHKY-GLAPKGTSVVLYR  360 (438)
Q Consensus       294 ~I~~la~~-----~~i~lhVD~a~gg~~~pf~~~~g~~~p~~-~~---~~~gvdsi-s~s~hK~-~~~p~g~g~l~~r  360 (438)
                      +|+++|++     |++++++|.+|..+...  .   ...+++ ..   ....+-.+ +.++.|. +.....+|++++.
T Consensus       170 ~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~--~---~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~  242 (388)
T PRK08637        170 AIVEAIKELADAGTKVVAVVDDAYFGLFYE--D---SYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG  242 (388)
T ss_pred             HHHHHHHHHHhcCCcEEEEecccchhcccC--C---ccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence            77777765     89999999999876431  1   001111 10   11123222 3377784 5566779998865

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.57  E-value=1.1e-13  Score=140.78  Aligned_cols=229  Identities=21%  Similarity=0.156  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHHhhc--
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYF--  246 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~~~~--  246 (438)
                      .+...++.+.++++++.+.+.    +  ++++|||+|+..++++++...   .+   ++|++.+..|.. ...+....  
T Consensus        78 ~~~~~~l~~~l~~~~~~~~~~----v--~~~~sgsea~~~al~~~~~~~---~~---~~ii~~~~~yhg~~~~~~~~~~~  145 (413)
T cd00610          78 NEPAVELAELLLALTPEGLDK----V--FFVNSGTEAVEAALKLARAYT---GR---KKIISFEGAYHGRTLGALSLTGS  145 (413)
T ss_pred             CHHHHHHHHHHHHhCCCCCCE----E--EEcCcHHHHHHHHHHHHHHHc---CC---CeEEEECCCcCCccHHHHHhcCC
Confidence            456777888899999865444    5  899999999999999987531   23   678887765444 33333322  


Q ss_pred             ----------CcEEEEeeCCC------CCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675          247 ----------NIKLWRVPVDK------EFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHG  303 (438)
Q Consensus       247 ----------Gi~v~~v~~~~------~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~  303 (438)
                                +.+++.+|.++      ++..|+++|++.+++   ++++++++..++++|.+.|    +++|.++|++||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~  225 (413)
T cd00610         146 KKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHG  225 (413)
T ss_pred             ccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence                      22466677652      345599999999976   5778888887888899877    999999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCC
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP  383 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  383 (438)
                      +++++|++++++..     .|... .++......|.++++  |++.++..+|+++.+ +++.+..     .+... ....
T Consensus       226 ~~li~Dev~~g~g~-----~g~~~-~~~~~~~~~d~~t~s--K~l~~g~~~g~~~~~-~~~~~~~-----~~~~~-~~~~  290 (413)
T cd00610         226 ILLIADEVQTGFGR-----TGKMF-AFEHFGVEPDIVTLG--KGLGGGLPLGAVLGR-EEIMDAF-----PAGPG-LHGG  290 (413)
T ss_pred             CEEEEeccccCCCc-----Ccchh-hHhhcCCCCCeEEEc--ccccCccccEEEEEc-HHHHHhh-----ccCCC-CCCC
Confidence            99999999987522     01000 011111123666554  997666778988765 4333221     00000 0000


Q ss_pred             CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +.  +.+....+++.++++.+..   .+..++..++.+++.+.|+++
T Consensus       291 t~--~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~  332 (413)
T cd00610         291 TF--GGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLREL  332 (413)
T ss_pred             CC--CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            11  1111224456666766543   355677777788888877654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.57  E-value=1.4e-13  Score=134.56  Aligned_cols=216  Identities=20%  Similarity=0.102  Sum_probs=160.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v  250 (438)
                      .+.+.++.+-|++..        +.+++|..|+..+++.+..     .|   ++|++....|..    +.+....+|++.
T Consensus        81 ~le~~iaal~ga~~~--------l~fsSGmaA~~~al~~L~~-----~g---~~iV~~~~~Y~gT~~~l~~~~~~~gie~  144 (409)
T KOG0053|consen   81 VLESGIAALEGAAHA--------LLFSSGMAAITVALLHLLP-----AG---DHIVATGDVYGGTLRILRKFLPKFGGEG  144 (409)
T ss_pred             HHHHHHHHHhCCceE--------EEecccHHHHHHHHHHhcC-----CC---CcEEEeCCCcccHHHHHHHHHHHhCcee
Confidence            344468888888742        7788899999999988773     66   889998877766    455666779999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      ..++++     |+++++++++++|.+|.+..|+||+..+-||++|+++||++|+.++||..+++++.            .
T Consensus       145 ~~vd~~-----~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~------------~  207 (409)
T KOG0053|consen  145 DFVDVD-----DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN------------Q  207 (409)
T ss_pred             eeechh-----hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc------------c
Confidence            999876     79999999999999999999999999999999999999999999999999886532            3


Q ss_pred             ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      +....|+|+++-|..||..|-..  .|++..+.+++.+..+... ...|          .-+.+  ..+|..+  -|.+.
T Consensus       208 ~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~-~~lg----------~~~~p--~~~~ll~--Rglkt  272 (409)
T KOG0053|consen  208 DPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQ-EDLG----------WCEDP--FDLFLLS--RGLKT  272 (409)
T ss_pred             ChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHH-HHhc----------CCCCH--HHHHHHh--cCcch
Confidence            44556899999999999544433  5666666454433322221 1111          11222  2566555  35566


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +.-++++..+++..+++.|++.|.++-++|
T Consensus       273 l~lRi~~~~ena~~~A~~Le~~~~v~kv~Y  302 (409)
T KOG0053|consen  273 LHLRINKHSENALKIALLLEAHPKVKKVYY  302 (409)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhCCceeEEEc
Confidence            677778888888889999988887775444

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.56  E-value=3.6e-13  Score=134.79  Aligned_cols=228  Identities=15%  Similarity=0.113  Sum_probs=148.9

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      .|....+..++.+.+.+++.+..|.+   +++    +  ++|+|+++++..++.++.-    ++|   ++|+++.++|+.
T Consensus        57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~----I--~it~G~~~~i~~~~~~l~~----~~g---d~Vl~~~p~y~~  123 (364)
T PRK07865         57 GYPTTAGTPELREAIVGWLARRRGVTGLDPAA----V--LPVIGSKELVAWLPTLLGL----GPG---DVVVIPELAYPT  123 (364)
T ss_pred             CCCCccCCHHHHHHHHHHHHHHcCCCCCCccc----E--EEccChHHHHHHHHHHHcC----CCC---CEEEECCCCccc
Confidence            34445667778888888888877754   554    6  8999999999887666521    267   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      +..+++.+|++++.++.       +++++   .+++++|++++|+||||.+.+   +++|.++|+++|+++++|++|+.+
T Consensus       124 ~~~~~~~~g~~~~~~~~-------~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~  193 (364)
T PRK07865        124 YEVGARLAGATVVRADS-------LTELG---PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLEL  193 (364)
T ss_pred             HHHHHHhcCCEEEecCC-------hhhCC---cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhh
Confidence            99999999999888752       23332   257899999999999998866   578888999999999999999865


Q ss_pred             hhhhhhhcCCCCCCCccC----CCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCC
Q 013675          316 VLPFAKKLGYPIPPFDFS----VQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGS  388 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~----~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gs  388 (438)
                      ...     +.....++..    ...-.+++.+..|.. ..+..+|+++. ++++........  ..|.            
T Consensus       194 ~~~-----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~-~~~~~~~~~~~~~~~~~~------------  255 (364)
T PRK07865        194 GWD-----AEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG-DPALVAELLEVRKHAGMM------------  255 (364)
T ss_pred             ccC-----CCCCccccccccCCccceEEEEeechhccCCCceeeEEEec-CHHHHHHHHHHHHhcCCC------------
Confidence            431     0001111111    112257888999984 34455888755 444433221111  0110            


Q ss_pred             CCCchHHHHHHHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          389 RPGGLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      -+. .  .+.++...+. .+..++..+...+..+.+.+.|++. |+.
T Consensus       256 ~~~-~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  298 (364)
T PRK07865        256 VPA-P--VQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA-GFR  298 (364)
T ss_pred             cCH-H--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            011 1  2222222232 2345566677778888888888765 443

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.56  E-value=7.7e-13  Score=134.10  Aligned_cols=220  Identities=22%  Similarity=0.188  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC--CCeEEecCCC-cCcHHHHHhhcC--
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSA-HSAYDKAAQYFN--  247 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~--~~~Viv~~~~-h~s~~~a~~~~G--  247 (438)
                      ..++.+.++++++.+  .    +  +++++||+|+..|+++++.+....+|.+  +++|++.... |.+...+. ..+  
T Consensus        85 ~~~l~~~l~~~~~~~--~----~--~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~-~~~~~  155 (401)
T PRK00854         85 LAPLYEELAALTGSH--K----V--LPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIV-GFSTD  155 (401)
T ss_pred             HHHHHHHHHhhCCCC--E----E--EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHH-hccCC
Confidence            344555677887764  2    4  8999999999999999987532222332  3567666554 55433322 211  


Q ss_pred             -----------cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccc
Q 013675          248 -----------IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       248 -----------i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~  312 (438)
                                 .++..+|.     .|+++++++|++++++|+++++++|+|.+.|    +++|+++|++||+++++|+++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~  230 (401)
T PRK00854        156 PDARGGFGPFTPGFRVVPF-----GDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQ  230 (401)
T ss_pred             ccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence                       12333332     4899999999999999999999999999987    999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCC--CccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~--gvdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      +|+..     .|.   .+.....  ..|.++++  |++.+.. .+|+++.+++ +.... .  ....+.     +..+  
T Consensus       231 ~g~g~-----~g~---~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~-~~~~l-~--~~~~~~-----t~~~--  289 (401)
T PRK00854        231 TGLGR-----TGK---LLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSE-VLGVL-K--PGQHGS-----TFGG--  289 (401)
T ss_pred             hCCCC-----Cch---HhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHH-HHhcc-c--CCCCCC-----CCCc--
Confidence            76432     010   0111111  24777764  8865542 4677777644 22211 0  000111     1111  


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +....++..++|+.+..   .+..++..++++++.+.|+++
T Consensus       290 ~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~  327 (401)
T PRK00854        290 NPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSI  327 (401)
T ss_pred             CHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhh
Confidence            11112334444443322   335677778888888888775

>PLN02397 aspartate transaminase

Probab=99.55  E-value=6.1e-13  Score=135.70  Aligned_cols=257  Identities=13%  Similarity=0.126  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHhhc-cCCCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHH--HHHHHHHHHHHHH
Q 013675          145 FSLINEACSMFAH-TNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTES--ILLAVKSSRDYMR  219 (438)
Q Consensus       145 ~~~~~~~~~~~~~-~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a--~~~al~a~~~~~~  219 (438)
                      .+.+.+++..... ....+|....|..++.+.+.+++.+..+.+  ++.    +....+.+|+.+  +..++.+..    
T Consensus        68 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~----i~~~~i~~g~Ga~~l~~~~~~~~----  139 (423)
T PLN02397         68 LNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENR----VATVQCLSGTGSLRLGAEFLARF----  139 (423)
T ss_pred             chHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCe----eEeeecccchHHHHHHHHHHHHh----
Confidence            3455555433322 222357777888888887777765442211  111    211223444444  333334332    


Q ss_pred             HhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC-CC-CCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---
Q 013675          220 NKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DK-EFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---  291 (438)
Q Consensus       220 ~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~-~~-~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---  291 (438)
                       .+|   |+|++++++|+.+...++..|++++.+|+ ++ ++.+|++.+++.+.   +++++++.++|+||||.+.+   
T Consensus       140 -~pG---d~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~  215 (423)
T PLN02397        140 -YPG---STIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQ  215 (423)
T ss_pred             -CCC---CEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHH
Confidence             267   99999999999999999999999999998 33 57899998888875   56889999999999999976   


Q ss_pred             HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC-ccCCCC-ccEEEeCCCCCCC-CCCCcEEEE--Eecccccc
Q 013675          292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF-DFSVQG-VTSISVDVHKYGL-APKGTSVVL--YRNREIRK  366 (438)
Q Consensus       292 i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~-~~~~~g-vdsis~s~hK~~~-~p~g~g~l~--~r~~~~~~  366 (438)
                      +++|+++|++||+++++|.+|..+...   ....+.++. .+...+ -.++..|+.|... .+..+|+++  ..+++...
T Consensus       216 l~~i~~~a~~~~~~vI~De~Y~~l~~~---~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~  292 (423)
T PLN02397        216 WEQISDLIKSKNHLPFFDSAYQGFASG---DLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAV  292 (423)
T ss_pred             HHHHHHHHHhCCcEEEEecccCCccCC---chhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHH
Confidence            667888999999999999999876521   000000000 011111 1356668899943 345589975  33333221


Q ss_pred             c---ch-hcc-cccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-----H---HHHHHHHHHHHHHHHHHHHhhcC
Q 013675          367 H---QF-VAV-TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-----E---GYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       367 ~---~~-~~~-~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-----~---g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .   .. ... ..|.+              ....++.++...+..     +   .+++..++..+..+.+.+.|+++
T Consensus       293 ~~~~~~~~~~~~~~~~--------------~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~  355 (423)
T PLN02397        293 RVKSQLKLIARPMYSN--------------PPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR  355 (423)
T ss_pred             HHHHHHHHHHhcccCC--------------CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1   11 000 00100              011133333332321     1   25667778888999999999887

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.55  E-value=7.3e-13  Score=131.04  Aligned_cols=211  Identities=17%  Similarity=0.139  Sum_probs=141.1

Q ss_pred             HHHHHHHHhC---CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          176 VIAMTAALLG---NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       176 ~~~~~a~l~g---~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      +++.+++.++   .++++    +  ++|+|+++++.+++.++            ++|+++.++|+.+..+++..|++++.
T Consensus        61 Lr~aia~~~~~~~~~~~~----i--~it~Ga~~~i~~~~~~~------------d~v~v~~P~y~~~~~~~~~~g~~~~~  122 (335)
T PRK14808         61 LIEKILSYLDTDFLSKNN----V--SVGNGADEIIYVMMLMF------------DRSVFFPPTYSCYRIFAKAVGAKFLE  122 (335)
T ss_pred             HHHHHHHHhCCCCCCcce----E--EEcCCHHHHHHHHHHHh------------CcEEECCCCHHHHHHHHHHcCCeEEE
Confidence            3444555555   66665    6  89999999999998765            35999999999999999999999999


Q ss_pred             eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      +|+++++.+|...    + +.++++++++|+||||.+.+.+++.+++ ++++++++|++|..+.-   ..  . .+... 
T Consensus       123 v~~~~~~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~---~~--~-~~~~~-  189 (335)
T PRK14808        123 VPLTKDLRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHG---ES--Y-VDLLK-  189 (335)
T ss_pred             ecCCCcCCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcC---Cc--h-HHHHH-
Confidence            9998777666443    2 3578999999999999999999999998 57999999999975421   00  0 11011 


Q ss_pred             CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHH
Q 013675          333 SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLE  411 (438)
Q Consensus       333 ~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~  411 (438)
                      ... -.++..+..|... ++..+|+++..+ ++.+........|..            +.....++.+++.  ..+.+.+
T Consensus       190 ~~~-~vi~~~S~SK~~~l~GlRvG~~v~~~-~~~~~l~~~~~~~~~------------~~~~q~a~~~~l~--~~~~~~~  253 (335)
T PRK14808        190 KYE-NLAVIRTFSKAFSLAAQRIGYVVSSE-KFIDAYNRVRLPFNV------------SYVSQMFAKVALD--HREIFEE  253 (335)
T ss_pred             hCC-CEEEEEechhhccCcccceEEEEeCH-HHHHHHHHhcCCCCC------------CHHHHHHHHHHHh--CHHHHHH
Confidence            111 2467778899954 445689977654 443322111111110            0111112233332  2244566


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCcc
Q 013675          412 NTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       412 ~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..+...+..+++.+.|++. |++
T Consensus       254 ~~~~~~~~r~~l~~~L~~~-g~~  275 (335)
T PRK14808        254 RTKFIVEERERMKSALREM-GYR  275 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCE
Confidence            6677777778888888876 443

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.55  E-value=7.7e-13  Score=133.98  Aligned_cols=217  Identities=18%  Similarity=0.147  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC-cHHHHHhhcCc---
Q 013675          174 AEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS-AYDKAAQYFNI---  248 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~-s~~~a~~~~Gi---  248 (438)
                      .++.++++++++.+. +.    +  ++++||++|+..+++.++.     .|  +.+++..+.+|. ....+....|.   
T Consensus        88 ~~la~~l~~~~~~~~~~~----v--~~~~sgsea~~~al~~~~~-----~g--~~~ii~~~~~yhg~~~~~~~~~~~~~~  154 (398)
T PRK03244         88 IALAERLVELLGAPEGGR----V--FFCNSGAEANEAAFKLARL-----TG--RTKIVAAEGGFHGRTMGALALTGQPAK  154 (398)
T ss_pred             HHHHHHHHHhCCCCCCCE----E--EEeCchHHHHHHHHHHHHH-----HC--CCeEEEECCCcCCccHHHHhccCCccc
Confidence            467778888888542 33    5  8999999999999999875     22  245666554544 43333333332   


Q ss_pred             ---------EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccch
Q 013675          249 ---------KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       249 ---------~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                               ++..+|.     .|++++++.+++++++|+++.+++++|.+.|    +++|.++|++||+++++|++++|+
T Consensus       155 ~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~  229 (398)
T PRK03244        155 RAPFEPLPGGVEHVPY-----GDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGI  229 (398)
T ss_pred             ccCCCCCCCCceEeCC-----CCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence                     2233332     3899999999888999999999999999987    889999999999999999999875


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                      ..     .|... .+.......|++++  .|.+.++..+|+++.+++ +... +.  ....     ..+..++.  ...+
T Consensus       230 gr-----~g~~~-~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~~~-~~~~-~~--~~~~-----~~t~~~~~--~~~a  290 (398)
T PRK03244        230 GR-----TGAWF-AHQHDGVTPDVVTL--AKGLGGGLPIGACLAFGP-AADL-LT--PGLH-----GSTFGGNP--VACA  290 (398)
T ss_pred             cc-----cchHH-hhhhhCCCCCEEEE--chhhhCCcccEEEEEcHH-HHhh-cc--CCCC-----cCCCCCCH--HHHH
Confidence            42     11000 01111112477666  599666667898888754 3221 00  0000     01111111  1233


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +..++|+.+..   .+..++..++.+++.+.|+++
T Consensus       291 aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~  322 (398)
T PRK03244        291 AALAVLDTIAS---EGLLENAERLGEQLRAGIEAL  322 (398)
T ss_pred             HHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhc
Confidence            44444444433   245677778888899999874

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.55  E-value=6.5e-13  Score=132.59  Aligned_cols=229  Identities=16%  Similarity=0.111  Sum_probs=146.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      |....+..++.+++.+++.+.+|.+   +++    +  ++|+|+++++..++.++.-    ++|   ++|+++.++|+.+
T Consensus        52 Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~----I--~it~G~~~~i~~~~~~l~~----~~g---d~Vl~~~p~y~~~  118 (357)
T TIGR03539        52 YPQTWGTPELREAIVDWLERRRGVPGLDPTA----V--LPVIGTKELVAWLPTLLGL----GPG---DTVVIPELAYPTY  118 (357)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCCCCcCe----E--EEccChHHHHHHHHHHHcC----CCC---CEEEECCCCcHHH
Confidence            4445666788888888888876654   444    6  8999999999987776521    367   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchh
Q 013675          240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      ...++.+|++++.++       |+++++   .+++++|++++|+||||.+.+   +++|.++|+++|+++++|++|+.+.
T Consensus       119 ~~~~~~~g~~~~~v~-------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  188 (357)
T TIGR03539       119 EVGALLAGATPVAAD-------DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELG  188 (357)
T ss_pred             HHHHHhcCCEEeccC-------ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence            999999999988774       233322   257899999999999999876   6679999999999999999997543


Q ss_pred             hhhhhhcCCCCCCCccCC----CCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          317 LPFAKKLGYPIPPFDFSV----QGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~----~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      ..     +.....++...    ..-.++..|..|.. .+...+|+++. ++++........ ...+.         + +.
T Consensus       189 ~~-----~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~-~~~~~~~~~~~~-~~~~~---------~-~~  251 (357)
T TIGR03539       189 WE-----GRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG-DPALVAELLTVR-KHAGL---------M-VP  251 (357)
T ss_pred             cC-----CCCccceecccCCCccccEEEEeccccccCCCceeEEEEec-CHHHHHHHHHHH-hhccc---------C-CC
Confidence            20     00010111111    01136777899983 34445788764 344433211111 00000         0 01


Q ss_pred             chHHHHHHHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          392 GLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       392 ~~ia~~~aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                        ..++.++...+. ....++..++..+.++++.+.|++. |+.
T Consensus       252 --~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~  292 (357)
T TIGR03539       252 --APVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA-GFR  292 (357)
T ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence              112233333332 2445566666777788888888774 443

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.54  E-value=1.9e-12  Score=131.29  Aligned_cols=174  Identities=13%  Similarity=0.117  Sum_probs=120.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      |...++..++.+.+.+++.+. +.++++    +  ++|+|+++++...+ ++.     .+|   ++|+++.++|..+...
T Consensus        71 Y~p~~g~~~lr~aia~~~~~~-~~~~d~----I--~it~Ga~~al~~l~-~l~-----~~g---d~Vlv~~P~y~~~~~~  134 (402)
T TIGR03542        71 YGPEQGYPFLREAIAENDYRG-RIDPEE----I--FISDGAKCDVFRLQ-SLF-----GSD---NTVAVQDPVYPAYVDS  134 (402)
T ss_pred             CCCCCCCHHHHHHHHHHHHhc-CCCHHH----E--EECCCcHHHHHHHH-Hhc-----CCC---CEEEEeCCCCcchHHH
Confidence            333455555665555443221 566665    7  89999999998743 332     266   8999999999999999


Q ss_pred             HhhcCc-----------EEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          243 AQYFNI-----------KLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       243 ~~~~Gi-----------~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      ++..|+           +++.+|+++  ++..|+.+     .+++++|++++|+||||.+.+   +++|.++|+++|+++
T Consensus       135 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~i  209 (402)
T TIGR03542       135 NVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLI  209 (402)
T ss_pred             HHHcCCccccccccccceEEEeecchhhCCCCCccc-----cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEE
Confidence            999999           999999874  34444322     156899999999999999987   788999999999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCC-ccCC-CCccEEEeCCCCCC-CCCCCcEEEEEecc
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPF-DFSV-QGVTSISVDVHKYG-LAPKGTSVVLYRNR  362 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~-~~~~-~gvdsis~s~hK~~-~~p~g~g~l~~r~~  362 (438)
                      ++|++|..+..   +. .. .+++ .... ....++..|+.|.+ ..+..+|+++...+
T Consensus       210 I~De~y~~~~~---~~-~~-~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~  263 (402)
T TIGR03542       210 LFDAAYSAFIS---DP-SL-PHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKE  263 (402)
T ss_pred             EEEchhhhhcc---CC-CC-CcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHH
Confidence            99999986542   10 00 0011 1111 12245567889984 34556899877543

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK08354 putative aminotransferase; Provisional

Probab=99.54  E-value=1e-12  Score=128.66  Aligned_cols=148  Identities=18%  Similarity=0.197  Sum_probs=114.5

Q ss_pred             HHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675          176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV  255 (438)
Q Consensus       176 ~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~  255 (438)
                      +++++++.+|.   +    +  ++|+|+++++.+++..+.      +|   ++|+++.++|+.+..+++..|++++.++ 
T Consensus        45 l~~~ia~~~~~---~----I--~vt~G~~~al~~~~~~~~------~g---d~vlv~~P~y~~~~~~~~~~g~~~~~~~-  105 (311)
T PRK08354         45 LEEEFSKLFGE---P----I--VITAGITEALYLIGILAL------RD---RKVIIPRHTYGEYERVARFFAARIIKGP-  105 (311)
T ss_pred             HHHHHHHHHCC---C----E--EECCCHHHHHHHHHHhhC------CC---CeEEEeCCCcHHHHHHHHHcCCEEeecC-
Confidence            45678888873   3    6  899999999987764332      56   8999999999999999999999997764 


Q ss_pred             CCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       256 ~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                           +|++.++++++ +++++++++|+||||.+.+   +++|.++|+++|+++++|++|+.|...     +. .  .+ 
T Consensus       106 -----~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~-----~~-~--~~-  170 (311)
T PRK08354        106 -----NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKK-----PE-S--PE-  170 (311)
T ss_pred             -----CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccc-----cc-c--cC-
Confidence                 47899998887 5678999999999999977   567777888999999999999876531     10 1  11 


Q ss_pred             CCCCccEEEeCCCCCCC-CCCCcEEEEE
Q 013675          333 SVQGVTSISVDVHKYGL-APKGTSVVLY  359 (438)
Q Consensus       333 ~~~gvdsis~s~hK~~~-~p~g~g~l~~  359 (438)
                        ..-.++..++.|.+. .+..+|+++.
T Consensus       171 --~~~vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        171 --GENIIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             --CCcEEEEeccHhhcCCccceeeeeee
Confidence              123467778899953 4456898776

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.54  E-value=5e-13  Score=136.16  Aligned_cols=186  Identities=16%  Similarity=0.158  Sum_probs=127.9

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-cCCCcCc
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-PVSAHSA  238 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-~~~~h~s  238 (438)
                      .|....+..++.+.+.+++.+..|.  ++++    |  ++|+|+++++.+++.++.......+|   +.|++ ..++|+.
T Consensus        69 ~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~----I--~it~Ga~~al~~~~~~l~~~~~~~~g---d~v~i~~~P~y~~  139 (416)
T PRK09440         69 NYDGPQGKDELIEALAALLNERYGWNISPQN----I--ALTNGSQSAFFYLFNLFAGRRADGSL---KKILFPLAPEYIG  139 (416)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCChhh----E--EEccChHHHHHHHHHHHhccccCCCC---CeEEEecCCCchh
Confidence            3444556667888888888877675  4444    6  89999999999999887631111135   78999 6999999


Q ss_pred             HHHHHhhcCc----EEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEE
Q 013675          239 YDKAAQYFNI----KLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHV  308 (438)
Q Consensus       239 ~~~a~~~~Gi----~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhV  308 (438)
                      +..++...|.    .+..++++.   ++.+|+++|+  ++++++++++++|+||||.+.+   +++|.++|++|++++++
T Consensus       140 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~  217 (416)
T PRK09440        140 YADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLI  217 (416)
T ss_pred             hHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEE
Confidence            8886654442    233344433   3679999998  4667899999999999999987   67888899999999999


Q ss_pred             eccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc
Q 013675          309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR  365 (438)
Q Consensus       309 D~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~  365 (438)
                      |.+|+.+.-.    ..+ . .......+-.++..|+.|.+.....+|+++.. +++.
T Consensus       218 De~Y~~~~~~----~~~-~-~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~-~~l~  267 (416)
T PRK09440        218 DNAYGPPFPG----IIF-S-EATPLWNPNIILCMSLSKLGLPGVRCGIVIAD-EEII  267 (416)
T ss_pred             eCCccccCCC----cch-h-hcCccccCCeEEEecccccCCCcceEEEEeCC-HHHH
Confidence            9999632110    000 0 00000112246677899987677789987654 4443

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.53  E-value=1.1e-12  Score=129.40  Aligned_cols=205  Identities=12%  Similarity=0.043  Sum_probs=136.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++.+|.+  +    +  ++|+|+++++.+++..       .+|   ++|+++.++|+.+..+++.+|++++.+|
T Consensus        53 ~Lr~~ia~~~~~~--~----I--~it~Gs~~al~~~~~~-------~~g---d~v~v~~P~y~~~~~~~~~~g~~~~~v~  114 (330)
T PRK05664         53 GLEAAARAYYGAP--Q----L--LPVAGSQAAIQALPRL-------RAP---GRVGVLSPCYAEHAHAWRRAGHQVRELD  114 (330)
T ss_pred             HHHHHHHHHhCCC--C----E--EECcCHHHHHHHHHHc-------cCC---CEEEEcCCChHHHHHHHHHcCCeEEEec
Confidence            5566788888753  3    6  8999999999887532       267   8999999999999999999999999998


Q ss_pred             CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCH---HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPI---QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      ++        +++++++ +++++++++||||||.+.+.   ++|+++|+++|+++++|.+|..+.- .     ..+..++
T Consensus       115 ~~--------~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~-~-----~s~~~~~  179 (330)
T PRK05664        115 EA--------EVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTP-Q-----HSLAACA  179 (330)
T ss_pred             hh--------hHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCC-c-----ccccccc
Confidence            64        4555553 67789999999999999874   5666667899999999999865431 0     0010111


Q ss_pred             cCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHH
Q 013675          332 FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGY  409 (438)
Q Consensus       332 ~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~  409 (438)
                       .. .-.++..++.|... .+..+|+++.. +++.+........|..          +     ....+++...+. ....
T Consensus       180 -~~-~~vi~~~SfSK~~gl~GlRiG~~v~~-~~l~~~~~~~~~~~~~----------~-----~~~~~~~~~~L~~~~~~  241 (330)
T PRK05664        180 -HR-PGLIVLRSFGKFFGLAGARLGFVLAE-PALLRALAELLGPWTV----------S-----GPTRWLAQAALADTPWQ  241 (330)
T ss_pred             -cC-CCEEEEeeccccccCCCcceEEEEeC-HHHHHHHHHhcCCCCC----------C-----HHHHHHHHHHHhChHHH
Confidence             11 11367778899953 55679998764 4443322111111111          0     112233333332 2334


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q 013675          410 LENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++..++..+..+++.+.|++.
T Consensus       242 ~~~~~~~~~~r~~l~~~L~~~  262 (330)
T PRK05664        242 RRQRERLLAASQRLAALLRRH  262 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            556677777888899988876

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.52  E-value=1.3e-12  Score=134.38  Aligned_cols=185  Identities=18%  Similarity=0.170  Sum_probs=146.3

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      ...+....+..++.+.+.+++....|.....  ++|  ++|+|+++|+.++++.+.+     +|   |.|++.+++|+..
T Consensus       125 ~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~--~~I--iiT~G~q~al~l~~~~l~~-----pG---d~v~vE~PtY~~~  192 (459)
T COG1167         125 ALQYGPTAGLPELREAIAAYLLARRGISCEP--EQI--VITSGAQQALDLLLRLLLD-----PG---DTVLVEDPTYPGA  192 (459)
T ss_pred             hhcCCCCCCcHHHHHHHHHHHHHhcCCccCc--CeE--EEeCCHHHHHHHHHHHhCC-----CC---CEEEEcCCCcHHH
Confidence            3455666788888888888888666665332  137  9999999999999998874     78   9999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcE-EEEEecCCCCCccccCHH---HHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTV-LIVGSAPGFPHGIIDPIQ---ELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~-~vv~~~~~~~tG~iddi~---~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ..+.+.+|++++.||+|+ ..+|+++|++.+.. +++ +.+....+||||...+.+   +|.++|++||++++.|..|+-
T Consensus       193 ~~~~~~~g~~~~~vp~d~-~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~e  271 (459)
T COG1167         193 LQALEALGARVIPVPVDE-DGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGE  271 (459)
T ss_pred             HHHHHHcCCcEEecCCCC-CCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchh
Confidence            999999999999999995 45999999999976 455 556667789999999864   899999999999999999986


Q ss_pred             hhhhhhhhcCCCCCC-CccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          315 FVLPFAKKLGYPIPP-FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~-~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +..     -+.+.|+ ......+-.++..++.|.++....+|+++...+
T Consensus       272 l~~-----~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~  315 (459)
T COG1167         272 LRY-----DGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPE  315 (459)
T ss_pred             hhc-----CCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHH
Confidence            543     1111222 222333557889999999877789999877643

>PRK07505 hypothetical protein; Provisional

Probab=99.50  E-value=1.7e-12  Score=131.69  Aligned_cols=229  Identities=14%  Similarity=0.123  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH--Hhhc
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--AQYF  246 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a--~~~~  246 (438)
                      ..+...++.+.+++++|.  ..       +++++|++|+..+++.++.... .+| +...|+.....|.++...  ....
T Consensus        89 ~~~~~~~l~~~la~~~~~--~~-------~~~~sG~~a~~~ai~~~~~~~~-~~~-~~~vi~~~~~~H~s~~~~~~~~~~  157 (402)
T PRK07505         89 RSQILKDLEEALSELFGA--SV-------LTFTSCSAAHLGILPLLASGHL-TGG-VPPHMVFDKNAHASLNILKGICAD  157 (402)
T ss_pred             hhHHHHHHHHHHHHHhCC--CE-------EEECChHHHHHHHHHHHHhccc-CCC-CCCEEEEchhhhHhHHhhhhhhhc
Confidence            355667888899999987  32       5566778899999887653111 112 112344555778886432  2223


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh-hhhhhhcCC
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV-LPFAKKLGY  325 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~-~pf~~~~g~  325 (438)
                      +.+++.+|.+     |++++++++++++++++++.|++|+|.+.|+++|.++|+++|+++++|++++... -++..  +.
T Consensus       158 ~~~v~~~~~~-----d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~--~~  230 (402)
T PRK07505        158 ETEVETIDHN-----DLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGE--GY  230 (402)
T ss_pred             CCeEEEeCCC-----CHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCC--ch
Confidence            5678888763     8999999998888899999999999999999999999999999999999984211 11000  00


Q ss_pred             CCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       326 ~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                      ..+.+........+++.+..|. +++.| |+++..++++..........|        +..++.+....++..+++..+.
T Consensus       231 ~~~~~~~~~~d~~i~~~s~sK~-~~~~G-g~~~~~~~~~~~~~~~~~~~~--------t~~~~~~~~a~aa~~a~l~~~~  300 (402)
T PRK07505        231 VRSELDYRLNERTIIAASLGKA-FGASG-GVIMLGDAEQIELILRYAGPL--------AFSQSLNVAALGAILASAEIHL  300 (402)
T ss_pred             HHHHcCCCCCCCeEEEEechhh-hhccC-eEEEeCCHHHHHHHHHhCCCc--------eeCCCCCHHHHHHHHHHHHHHh
Confidence            0001111122345666788898 44444 666655554433221111111        1122222233445556665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013675          406 QEGYLENTKAIMEVSESIQK  425 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~  425 (438)
                      ++.+.+..++..++.+.+.+
T Consensus       301 ~~~~~~~~~~l~~~~~~~~~  320 (402)
T PRK07505        301 SEELDQLQQKLQNNIALFDS  320 (402)
T ss_pred             ccCcHHHHHHHHHHHHHHHH
Confidence            55555555555555554443

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.50  E-value=2.4e-12  Score=127.50  Aligned_cols=210  Identities=15%  Similarity=0.085  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          174 AEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      .++++.+++.+|.+. ++    |  ++|+|+++++.+... +.     .+|   + |+++.++|+.+..+++..|++++.
T Consensus        56 ~~L~~~ia~~~~~~~~~~----I--~i~~Gs~e~i~~l~~-~~-----~~g---~-v~v~~P~y~~y~~~~~~~g~~~~~  119 (339)
T PRK06959         56 DGLAACAARYYGAPDAAH----V--LPVAGSQAAIRALPA-LL-----PRG---R-VGIAPLAYSEYAPAFARHGHRVVP  119 (339)
T ss_pred             HHHHHHHHHHhCCCCccc----E--EECcCHHHHHHHHHH-hc-----CCC---e-EEEcCCCcHHHHHHHHHCCCEEEe
Confidence            467778999999975 44    6  899999999875443 22     244   4 888999999999999999999999


Q ss_pred             eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHH---HHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGEL---ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~l---a~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      +|.++      +.    +.+.++++++++||||||.+.+.+++.++   |++++.++++|++|..+...  ..    +..
T Consensus       120 v~~~~------~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~--~s----~~~  183 (339)
T PRK06959        120 LDEAA------DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA--AS----LAA  183 (339)
T ss_pred             ecccc------hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc--cc----chh
Confidence            88753      22    23345689999999999999886666555   56789999999999865421  00    001


Q ss_pred             CccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-H
Q 013675          330 FDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-E  407 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~  407 (438)
                      +. ...+ -++..++.|... ++..+|+++.. +++.+........|...               ..++.++...+.. +
T Consensus       184 ~~-~~~~-vi~l~SfSK~~gl~GlRiGy~v~~-~~li~~l~~~~~~~~vs---------------~~~q~a~~~~L~~~~  245 (339)
T PRK06959        184 HT-DRPG-LVVLRSVGKFFGLAGVRAGFVLAA-PALLAALRDALGAWTVS---------------GPARHAVRAAFADAA  245 (339)
T ss_pred             cc-CCCC-EEEEecChhhcCCcchheEEEecC-HHHHHHHHHhcCCCCCc---------------HHHHHHHHHHhCcHH
Confidence            11 1123 367778899843 55668997764 44443322222222211               1133333333433 3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..++..++..+..+++.+.|+++ |++
T Consensus       246 ~~~~~~~~~~~~r~~l~~~L~~~-g~~  271 (339)
T PRK06959        246 WQAAMRERLAADGARLAALLRAH-GFA  271 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCC
Confidence            34566677788889999999886 444

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.49  E-value=1.5e-12  Score=128.48  Aligned_cols=237  Identities=12%  Similarity=0.012  Sum_probs=165.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEE-ecCCCcCc--H
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMI-IPVSAHSA--Y  239 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Vi-v~~~~h~s--~  239 (438)
                      ...++.+.++..++.+.+.++++.|.+.   + +-+++.|||.+..+++..+..     +|   ++++ +..+.+.+  +
T Consensus        41 sHRs~~F~~i~~~~~~~Lr~Ll~~P~~y---~-Vlfl~GggT~~~ea~~~Nll~-----~g---~~~~~~~~tG~fg~r~  108 (364)
T PRK12462         41 SHRSSWFSSLLAQAEADLRDLLGIPDEY---G-VVFLQGGSSLQFSMIPMNFSR-----PG---AAAPEYVTTGYWSRKA  108 (364)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhCCCCCC---e-EEEEeccHHHHHHHHHHHcCC-----CC---CcEEEEEeCCHHHHHH
Confidence            4567889999999999999999997543   1 335667799999988887753     45   5443 34444444  5


Q ss_pred             HHHHhhcCcEEEEeeCCC----CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccch
Q 013675          240 DKAAQYFNIKLWRVPVDK----EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~----~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      .+.++.+| ++..+...+    +.-++++++  .++++...|.+++-+|.+|+..|     ++.+.++.+++||++.+-+
T Consensus       109 ~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~  180 (364)
T PRK12462        109 IGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFM  180 (364)
T ss_pred             HHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhh
Confidence            67777777 555554211    234566665  34567789999999999999986     3333468999999996533


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch--hcccccCCCccCCCCccCCCCCch
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF--VAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~--~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      ..           ++|+...  |.+..+.+|.+ +|+|.+++++|++.+.+...  ....+|.... ...+...+.+...
T Consensus       181 s~-----------pid~~~~--dvi~agsQKnl-gP~Gltvvivs~~al~~~~~~~p~~ldy~~~~-~~~s~~nTPpv~~  245 (364)
T PRK12462        181 SR-----------PFDVEAY--GMVYAHAQKNL-GPAGVTVAIIRRALLERVPDTLPPMLDFRTHV-EHRSNYNTPPVFA  245 (364)
T ss_pred             CC-----------CCChHHc--cEEEeeccccC-CCCceEEEEECHHHHhhccccCCchhhHHHHH-hcCCCCCCchHHH
Confidence            22           4565554  99999999996 59999999999876533221  1111111000 0112223555566


Q ss_pred             HHHHHHHHHHHcHH--HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          394 IAGAWAALMSLGQE--GYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       394 ia~~~aal~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +.++-.+++++-++  |++.+.++..+.++.+++.|.+.+++.
T Consensus       246 iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~  288 (364)
T PRK12462        246 IYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVI  288 (364)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            77888889888777  999999999999999999999988664

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.49  E-value=4.9e-12  Score=127.74  Aligned_cols=172  Identities=21%  Similarity=0.139  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      ...++.+.++++.+.+  .    +  ++++||++|+..|+++++.+... +|. .+++|++.+..|......+...+...
T Consensus        74 ~~~~la~~l~~~~~~~--~----v--~~~~sGseA~~~al~~ar~~~~~-~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~  144 (389)
T PRK01278         74 EQERLAERLVENSFAD--K----V--FFTNSGAEAVECAIKTARRYHYG-KGHPERYRIITFEGAFHGRTLATIAAGGQE  144 (389)
T ss_pred             HHHHHHHHHHhhCCCC--E----E--EEcCCcHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCCcHHHHhccCCh
Confidence            3445666777776432  3    5  89999999999999999875332 452 24588888887666554444443221


Q ss_pred             EEe----eCCCCCc----cCHHHHHHhhccCcEEEEEecCCCCCccc----cCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          251 WRV----PVDKEFR----ADVKAIKKYINRNTVLIVGSAPGFPHGII----DPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       251 ~~v----~~~~~~~----~d~~~Le~~I~~~t~~vv~~~~~~~tG~i----ddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      ...    |..++..    .|++++++++++++++|+++.+++++|..    +.+++|.++|++||+++++|+++.|+.. 
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~-  223 (389)
T PRK01278        145 KYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGR-  223 (389)
T ss_pred             hhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc-
Confidence            111    2112222    58999999999899999999888888843    3589999999999999999999987643 


Q ss_pred             hhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          319 FAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                          .|.   .+.....+  .|.+++  .|.+.+....|+++.+++
T Consensus       224 ----~g~---~~~~~~~~~~pdi~t~--sK~l~~G~~ig~~~~~~~  260 (389)
T PRK01278        224 ----TGK---LFAHEWAGVTPDIMAV--AKGIGGGFPLGACLATEE  260 (389)
T ss_pred             ----CCc---ceeecccCCCCCEEEE--ehhccCCcceEEEEEcHH
Confidence                111   01111112  365554  588554455888777654

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.48  E-value=7.5e-12  Score=126.68  Aligned_cols=223  Identities=21%  Similarity=0.166  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEecCC-CcCcHHHHHhhcCc-
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVS-AHSAYDKAAQYFNI-  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~~~-~h~s~~~a~~~~Gi-  248 (438)
                      ..++.+.++++.+.+  .    +  .++++||+|+..|++.+|.+....+|.  .+++|+.... .|.....+....+- 
T Consensus        84 ~~~l~~~l~~~~~~~--~----~--~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~  155 (396)
T PRK04073         84 LGPWYEKVAKLTGKD--M----V--LPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEE  155 (396)
T ss_pred             HHHHHHHHHhcCCCC--e----E--EEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCc
Confidence            344556677776643  2    4  899999999999999998763322232  2456776654 46555444443331 


Q ss_pred             -----------EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEecccc
Q 013675          249 -----------KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       249 -----------~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~g  313 (438)
                                 .+..+|.+     |++++++++++++++|+++.+++|+|.+.|    +++|.++|++||+++++|++|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~  230 (396)
T PRK04073        156 EYKRGFGPMLPGIKKIPYG-----DLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT  230 (396)
T ss_pred             ccccCCCCCCCCceEeCCC-----CHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh
Confidence                       12233322     789999999989999999999999999866    8999999999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      ++...     |... .++......|++++  .|.+.++ ..+|+++.++ ++.+.. .  ....     ..+..+. + .
T Consensus       231 g~g~~-----g~~~-~~~~~~~~pdi~~~--sK~lg~gg~~ig~~~~~~-~i~~~~-~--~~~~-----~~t~~~~-~-~  291 (396)
T PRK04073        231 GLGRT-----GKLF-ACDWDNVTPDMYIL--GKALGGGVFPISCVAANR-DILGVF-T--PGSH-----GSTFGGN-P-L  291 (396)
T ss_pred             CCCcC-----cHHH-HhhhcCCCCCEEEe--cccccCCCCcceEEEEcH-HHHhhh-c--CCCC-----CCCCCCC-H-H
Confidence            76431     1000 01112223577776  4874443 4578877654 332211 0  0000     0111111 1 1


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..++.-++|+.+.++   +..++..++.+++.+.|+++
T Consensus       292 ~~aaa~aaL~~~~~~---~l~~~~~~~~~~l~~~L~~l  326 (396)
T PRK04073        292 ACAVSIAALEVLEEE---KLPERSLELGEYFKEQLKEI  326 (396)
T ss_pred             HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhh
Confidence            122333445443232   34466677788888888775

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.46  E-value=8.2e-12  Score=125.51  Aligned_cols=229  Identities=17%  Similarity=0.120  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      +...++.+.+++++|.+  .    +  ++++||++|+..++++++..... .|..+++|+++.+.+..+...+...+...
T Consensus        69 ~~~~~l~~~la~~~g~~--~----~--~~~~sg~~a~~~a~~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~~~~  139 (379)
T TIGR00707        69 EPQEELAEKLVEHSGAD--R----V--FFCNSGAEANEAALKLARKYTGD-KGKEKKKIIAFENSFHGRTMGALSATGQP  139 (379)
T ss_pred             HHHHHHHHHHHhhCCCC--E----E--EEeCCcHHHHHHHHHHHHHHhhc-cCCCCCeEEEECCCcCCccHHHHHhcCCh
Confidence            34566777889998875  3    4  89999999999999987643221 11113789988877655544444443322


Q ss_pred             E----EeeCCCCCcc----CHHHHHHhhccCcEEEEEecCCCCCcccc----CHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          251 W----RVPVDKEFRA----DVKAIKKYINRNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       251 ~----~v~~~~~~~~----d~~~Le~~I~~~t~~vv~~~~~~~tG~id----di~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      .    ..++..+...    |++++++.+++++++|+++.+++++|...    ++++|.++|+++|+++++|++|+++...
T Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~  219 (379)
T TIGR00707       140 KYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRT  219 (379)
T ss_pred             hhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence            1    1233222222    89999999998999999988877777642    3899999999999999999999765321


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~  398 (438)
                           |... .+.......|+++  .+|.+.++.++|+++.++ ++.......   ..+     ... + -+....+++.
T Consensus       220 -----g~~~-~~~~~~~~~d~~t--~sK~~~~G~riG~~~~~~-~~~~~~~~~---~~~-----~~~-~-~~~~~~~aa~  280 (379)
T TIGR00707       220 -----GKFF-AYEHYGIEPDIIT--LAKGLGGGVPIGATLAKE-EVAEAFTPG---DHG-----STF-G-GNPLACAAAL  280 (379)
T ss_pred             -----chhh-hHHhcCCCCCEEE--EcccccCCcccEEEEEcH-HHHhhhcCC---CCC-----CCC-C-CCHHHHHHHH
Confidence                 1000 1111111235554  469966556789877653 333221100   000     011 1 1122344566


Q ss_pred             HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++|+.+..   .+..++..++++++++.|+++
T Consensus       281 aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~  309 (379)
T TIGR00707       281 AVLEVIEK---ERLLENVKEKGDYFKERLEEL  309 (379)
T ss_pred             HHHHHHHh---hhHHHHHHHHHHHHHHHHHHH
Confidence            66665532   234556666777777776553

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.44  E-value=2.3e-11  Score=123.32  Aligned_cols=175  Identities=19%  Similarity=0.109  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      ...++.+.++++++.+  .    +  .++++||+|+..|++.++.+...++|.  .+.+|+..+.+ |..........+-
T Consensus        74 ~~~~~~~~l~~~~~~~--~----~--~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~  145 (400)
T PTZ00125         74 VLGLAEKYITDLFGYD--K----V--LPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTD  145 (400)
T ss_pred             HHHHHHHHHHhCCCCC--E----E--EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCC
Confidence            4456666777777764  2    4  899999999999999998654333443  23556665554 5555554443332


Q ss_pred             EEE---EeeCCCC----CccCHHHHHHhhc-cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchh
Q 013675          249 KLW---RVPVDKE----FRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       249 ~v~---~v~~~~~----~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      ...   ..+..++    ...|+++++++++ +++++|++..+++++|.+.|    +++|.++|++||+++++|++++++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g  225 (400)
T PTZ00125        146 PKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG  225 (400)
T ss_pred             cchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            110   0011110    1138999999996 67999999999999999887    9999999999999999999987653


Q ss_pred             hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK-GTSVVLYRNR  362 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~-g~g~l~~r~~  362 (438)
                      ..     |... ..+......|.++++  |.+.++. ++|+++.+++
T Consensus       226 ~~-----G~~~-~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~~  264 (400)
T PTZ00125        226 RT-----GKLL-AHDHEGVKPDIVLLG--KALSGGLYPISAVLANDD  264 (400)
T ss_pred             cc-----chhh-HHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcHH
Confidence            21     1000 011111124777765  9866554 6888887654

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.43  E-value=8.8e-12  Score=120.08  Aligned_cols=236  Identities=17%  Similarity=0.194  Sum_probs=160.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCC----CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGN----KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~----~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      +.|...+.+++.+.+.+.-|.    ++++    +  ++|.|+|.|+.+.+..+.+     +|   +..++|.+.|+.|..
T Consensus       120 y~Gl~~frqa~A~Fm~~~r~~~v~fdP~~----~--Vv~~G~T~ane~l~fcLad-----pg---dafLvPtPyY~gfdr  185 (471)
T KOG0256|consen  120 YHGLPSFRQAVAEFMERARGNRVKFDPER----V--VVTNGATSANETLMFCLAD-----PG---DAFLVPTPYYPGFDR  185 (471)
T ss_pred             ccCchHHHHHHHHHHHHHhCCCCccCccc----e--EEecccchhhHHHHHHhcC-----CC---ceeeecCCCCCcccc
Confidence            344555666666666666554    4554    6  8999999999998888775     88   899999999999998


Q ss_pred             HHhhc-CcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          242 AAQYF-NIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       242 a~~~~-Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      -+++. |++++.|.+..  ++++++++||.+.++      +.+.|++++|+||.|++.+   +..+.+.|.+++|.+++|
T Consensus       186 dl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~D  265 (471)
T KOG0256|consen  186 DLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISD  265 (471)
T ss_pred             cceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEee
Confidence            88877 88999998875  789999999999864      5789999999999999977   556667778999999999


Q ss_pred             ccccchhhhhhhhcCCCCC------CCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCC
Q 013675          310 LCLGGFVLPFAKKLGYPIP------PFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVS  382 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p------~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~  382 (438)
                      +.|++.+.-   +.++ .+      ..+. ...-.-+..+..|-++-| ...|+++..++.+....-....  .+..  +
T Consensus       266 EIya~sVF~---~~~F-~Sv~ev~~~~~~-~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmss--f~~v--S  336 (471)
T KOG0256|consen  266 EIYAGSVFD---KSEF-RSVLEVRKDPHL-DPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSS--FGLV--S  336 (471)
T ss_pred             hhhcccccC---ccCc-eEHHHHhhcccc-CCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhh--ccCC--c
Confidence            999887652   1122 10      0111 222245667788883322 3478887777765433211100  0000  0


Q ss_pred             CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          383 PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       383 ~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .     . ...+++...+=..+-++-+++..+++...-+++.++|+++
T Consensus       337 s-----~-tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l  378 (471)
T KOG0256|consen  337 S-----Q-TQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL  378 (471)
T ss_pred             H-----H-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence            0     0 0001111111133344556778888888899999999876

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.43  E-value=4.4e-12  Score=128.93  Aligned_cols=233  Identities=14%  Similarity=0.164  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..+..+..|+.||.+..-       .+++|.|.||...+.+..     ++|   |.|+++...|-|.....-+.|+..++
T Consensus        72 i~eAqe~aA~~fgAd~ty-------FvvNGTS~ank~vi~a~~-----~~G---D~VLvdRN~HKSi~~glilaGa~Pvy  136 (557)
T COG1982          72 IKEAQELAARVFGADHTY-------FVVNGTSTANKAVINAVL-----TPG---DKVLVDRNCHKSIHHGLILAGATPVY  136 (557)
T ss_pred             HHHHHHHHHHHhCCCceE-------EEECCccHHHHHHHHhhc-----CCC---CEEEecCCccHHHHHHHHHcCCceEE
Confidence            345556799999999873       789999999999999987     388   99999999999999998899999888


Q ss_pred             eeCCC------CCccCHHHHHHhhccC--c-EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          253 VPVDK------EFRADVKAIKKYINRN--T-VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       253 v~~~~------~~~~d~~~Le~~I~~~--t-~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      +....      -+.++.+.+++++.++  . +++++++||+ .|++.++++|.+.++++++|+.+|.+++...- |..  
T Consensus       137 l~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~-~~~--  212 (557)
T COG1982         137 LEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFD-FSP--  212 (557)
T ss_pred             ecCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCccccc-ccc--
Confidence            87643      2569999999987643  4 7899999988 99999999999999999999999999864322 110  


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc-cccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR-EIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~-~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                        ..|. .....+.|+++-|.||.+.+-..+|.+.+++. ......+...        .......|.+..++|++-.|-+
T Consensus       213 --~l~~-~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea--------~~~h~STSPsY~l~ASlD~Ar~  281 (557)
T COG1982         213 --MLPE-SALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEA--------LMMHQSTSPSYPLMASLDVARM  281 (557)
T ss_pred             --cCcc-hhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHH--------HHHHccCCchHHHHHHHHHHHH
Confidence              1222 22336789999999999888888898888873 2211111100        0011123444556677766555


Q ss_pred             HHcHHH---HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          403 SLGQEG---YLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       403 ~~g~~g---~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.+..|   .++..+...+.++.+++...+++++++
T Consensus       282 ~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~  317 (557)
T COG1982         282 QEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPV  317 (557)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Confidence            555555   344578888888888888888875543

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.43  E-value=2.4e-11  Score=122.95  Aligned_cols=176  Identities=20%  Similarity=0.198  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc-Cc
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF-NI  248 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~-Gi  248 (438)
                      .+...++.++++++.|.+  .    +  ++|+||++|+..|+++++..... .+..+++|++....+..+...+... +.
T Consensus        80 ~~~~~~la~~l~~~~~~~--~----v--~~~~gg~eA~~~al~~a~~~~~~-~~~~~~~ii~~~~~yhg~~~~~~~~~~~  150 (396)
T PRK02627         80 IEPQEELAEKLVELSGMD--K----V--FFCNSGAEANEAAIKLARKYGHK-KGIEKPEIITAENSFHGRTLATLSATGQ  150 (396)
T ss_pred             CHHHHHHHHHHHhhcCCC--E----E--EECCCcHHHHHHHHHHHHHHhcc-cCCCCCeEEEECCCcCcccHHHHHhcCC
Confidence            455667778888887653  3    5  89999999999999998864322 2333467887776654443333222 22


Q ss_pred             EEE---EeeCCCCC----ccCHHHHHHhhccCcEEEEEecCCCCCcc-cc---CHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          249 KLW---RVPVDKEF----RADVKAIKKYINRNTVLIVGSAPGFPHGI-ID---PIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       249 ~v~---~v~~~~~~----~~d~~~Le~~I~~~t~~vv~~~~~~~tG~-id---di~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ...   ..+..++.    ..|++++++++++++++|+++.+++++|. ..   .+++|.++|++||+++++|++|+++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~  230 (396)
T PRK02627        151 PKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGR  230 (396)
T ss_pred             ccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCc
Confidence            211   11222111    12899999999889999999999999994 43   389999999999999999999987643


Q ss_pred             hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      .     |... .++......|.+++  .|...++..+|+++.+++
T Consensus       231 ~-----g~~~-~~~~~~~~pdi~t~--sK~~~~G~rig~~~~~~~  267 (396)
T PRK02627        231 T-----GKLF-AYQHYGIEPDIMTL--AKGLGGGVPIGAVLAKEK  267 (396)
T ss_pred             c-----Ccee-eehhcCCCCCEEEE--cchhhCCcccEEEEEcHH
Confidence            1     1100 11111112366654  488555556888877643

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.42  E-value=2.6e-11  Score=115.17  Aligned_cols=241  Identities=17%  Similarity=0.197  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCcccee--EcCChHHHHHHHHHHHHHHHHHhcCCCCCeEE---ecCCCcCcHHHHH
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGN--MTSGGTESILLAVKSSRDYMRNKRGITRPEMI---IPVSAHSAYDKAA  243 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~--~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Vi---v~~~~h~s~~~a~  243 (438)
                      +.++|.-+++...+.||++++.     ||+  -..+||-||+.+-.++..     ++   ++|.   .|...|-+.--.-
T Consensus        84 ID~iE~LCq~RALeaF~ldp~k-----WGVNVQp~SGSPANfavYtall~-----Ph---~RiMGLDLP~GGHLsHGy~T  150 (477)
T KOG2467|consen   84 IDQIELLCQKRALEAFGLDPEK-----WGVNVQPYSGSPANFAVYTALLK-----PH---ERIMGLDLPSGGHLSHGYQT  150 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHH-----CceeeccCCCCchhhHHHhhhcC-----CC---CeeeeccCCCCCcccccccc
Confidence            5567888888999999999987     555  458899999988888763     55   5554   4566665521111


Q ss_pred             hhcCcE-----EE--EeeCCC-CCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccc
Q 013675          244 QYFNIK-----LW--RVPVDK-EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       244 ~~~Gi~-----v~--~v~~~~-~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ..-.+.     ..  ...+|+ +|-+|.+.||+.-. =+|+++++  +.+..-..-|..++.+||.+.|..+.+|-++-+
T Consensus       151 ~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iia--G~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHIS  228 (477)
T KOG2467|consen  151 PTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIA--GTSAYSRLIDYARFRKIADKVGAYLMADMAHIS  228 (477)
T ss_pred             CCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEe--ccccchhhccHHHHHHHHHhcCceeehhhhhHH
Confidence            111111     11  122454 89999999998644 47887763  445566778899999999999999999999866


Q ss_pred             hhhhhhhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc--cccccc-hhcccccCC--CccCCCCccCC
Q 013675          315 FVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR--EIRKHQ-FVAVTEWSG--GLYVSPTVAGS  388 (438)
Q Consensus       315 ~~~pf~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~--~~~~~~-~~~~~~~~g--~~~~~~~~~gs  388 (438)
                      +++    ++|. +| ||+    .+|+++..+||.+-+|.| |++++|..  .....+ -....++..  +...-|.++|.
T Consensus       229 gLV----AA~v-ipsPFe----y~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGG  298 (477)
T KOG2467|consen  229 GLV----AAGV-IPSPFE----YCDIVTTTTHKSLRGPRG-AMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGG  298 (477)
T ss_pred             HHH----hccc-CCCccc----ccceeeccccccccCCcc-eeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCC
Confidence            655    2333 22 444    379999999999999987 77888852  111110 000001100  01123456676


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .....|+++..||+.-....|.+..++..++++.|.++|.+. |.++
T Consensus       299 PHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~l  344 (477)
T KOG2467|consen  299 PHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKL  344 (477)
T ss_pred             CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceE
Confidence            666778999999999888999999999999999999999876 5543

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.41  E-value=3e-11  Score=122.28  Aligned_cols=221  Identities=18%  Similarity=0.104  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC-CcCcHHHHHhhcCc---
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS-AHSAYDKAAQYFNI---  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~-~h~s~~~a~~~~Gi---  248 (438)
                      ..++.+.++++++.+  .    +  .++++|++|+..|++.+|.+...+.|..+++|+..+. .|.+..-+...-+.   
T Consensus        79 ~~~la~~L~~~~~~~--~----~--~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~  150 (397)
T TIGR03246        79 VLRLAKKLVDATFAD--K----V--FFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKY  150 (397)
T ss_pred             HHHHHHHHHhhCCCC--E----E--EEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccc
Confidence            445666778777543  2    4  8999999999999999987643322323456666554 46655444443332   


Q ss_pred             ---------EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCcccc----CHHHHHHHHHHcCCeEEEeccccch
Q 013675          249 ---------KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       249 ---------~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id----di~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                               .+..+|.     -|++++++++++++++|++...+++.|.+.    .+++|.++|++||+++++|+++.|+
T Consensus       151 ~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~  225 (397)
T TIGR03246       151 SQGFAPLPGGIKHAPY-----NDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGV  225 (397)
T ss_pred             ccCCCCCCCceEEeCC-----CCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC
Confidence                     2233332     289999999988899999998777777653    3899999999999999999998766


Q ss_pred             hhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          316 VLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      ..     .|.   -+.....|  .|++++  .|.+.+...+|+++.+++ +.+.. .  ....     ..+..|..  ..
T Consensus       226 Gr-----~G~---~~a~~~~gv~pDi~t~--~K~lggG~pigav~~~~~-i~~~~-~--~~~~-----~~t~~~~p--~~  284 (397)
T TIGR03246       226 GR-----TGE---LYAYMHYGVTPDILTS--AKALGGGFPIGAMLTTTE-IAAHL-K--VGTH-----GTTYGGNP--LA  284 (397)
T ss_pred             Cc-----ccc---chhhhhcCCCCCEEEe--ehhhhCCcceeEEEEcHH-HHHhc-c--CCCc-----CCCCCCCH--HH
Confidence            32     111   01111122  477755  577544456788777643 32111 0  0000     11111111  11


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .+++.+++..+..   .+..++..++.+++.+.|+++
T Consensus       285 ~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l  318 (397)
T TIGR03246       285 CAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKI  318 (397)
T ss_pred             HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHH
Confidence            3345555654422   456777888888888888764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.40  E-value=3.3e-11  Score=119.52  Aligned_cols=226  Identities=20%  Similarity=0.147  Sum_probs=157.8

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      .+...+-.++.+.+|+++|.+..        ++.++|-.||..++.++..     ++   |.|+..+..|.|+...++..
T Consensus        80 ~G~~~~h~~LE~~lA~f~g~e~a--------l~f~SGy~AN~~~i~~l~~-----~~---dli~~D~lnHASiidG~rls  143 (388)
T COG0156          80 SGTSDLHVELEEELADFLGAEAA--------LLFSSGFVANLGLLSALLK-----KG---DLIFSDELNHASIIDGIRLS  143 (388)
T ss_pred             cCCcHHHHHHHHHHHHHhCCCcE--------EEEcccchhHHHHHHHhcC-----CC---cEEEEechhhhhHHHHHHhC
Confidence            34445555666679999999853        6667788899998888873     55   88888899999999999999


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      +.+++..+-+     |+++||+.+.+      +.++|+....-+..|.+-|+++|.+++++|+.++.||.+++-+++   
T Consensus       144 ~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~---  215 (388)
T COG0156         144 RAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVL---  215 (388)
T ss_pred             CCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEcccccccc---
Confidence            9999988764     89999999976      357888888889999999999999999999999999999976654   


Q ss_pred             hhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          321 KKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       321 ~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                      -..|.. ...+......+|++..+..|.+ |..| | .+..+..+..........+.-        ..+-|....+++..
T Consensus       216 G~~GrG~~e~~g~~~~~vdi~~gTlsKAl-Gs~G-g-~v~g~~~~~d~L~~~ar~~if--------StalpP~~aaa~~~  284 (388)
T COG0156         216 GPNGRGLAEHFGLEPEEVDIIVGTLGKAL-GSSG-G-YIAGSAALIDYLRNRARPFIF--------STALPPAVAAAALA  284 (388)
T ss_pred             CCCCccHHHHhCCCCccceEEEEEchhhh-cccC-c-eeeCcHHHHHHHHHhCCceec--------cCCCCHHHHHHHHH
Confidence            111211 1112122234689999999994 5433 3 445555544433221111110        01223333456667


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      +++.+  +...+..++..++++++++.++.
T Consensus       285 al~~l--~~~~~~r~~L~~~~~~~~~~~~~  312 (388)
T COG0156         285 ALRIL--EEGPERRERLQELAAFFRSLLKA  312 (388)
T ss_pred             HHHHH--HhCHHHHHHHHHHHHHHHHHHHh
Confidence            77665  34467777788888888866554

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.39  E-value=4.5e-12  Score=123.56  Aligned_cols=233  Identities=16%  Similarity=0.132  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChH-HHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT-ESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt-~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      +.++...+..-+.+..|++...     ..++++-+| +++.+.+.++|.   +..+   +.|+.+...|.+-.+++...|
T Consensus        54 ~~~ltn~l~~d~~~~~G~~~~~-----~~~~vP~atgm~l~l~l~~l~~---r~~a---~~Viw~ridqkSc~kai~~AG  122 (389)
T PF05889_consen   54 LAKLTNSLVLDALRLAGLRSVK-----SCFVVPMATGMSLTLCLLALRM---RPKA---KYVIWPRIDQKSCFKAIERAG  122 (389)
T ss_dssp             HHHHHHHHHHHHHHHTTHTTHC-----EEEEESS-HHHHHHHHHHHHHH---HCT-----EEEEEEEETHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCcccc-----ceEEEecccccHHHHHHHHHhc---ccCC---ceEEEeeccccchHHHHHhcC
Confidence            4566666777777888987543     125666555 677777777772   1234   789999999999999999999


Q ss_pred             cEEEEeeCC--C-CCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          248 IKLWRVPVD--K-EFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       248 i~v~~v~~~--~-~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      ++++.||..  + ....|.+++|+.|++   +..+.++++.+...|...| +++|+++|++|||+.++.+|||--.--.+
T Consensus       123 l~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~  202 (389)
T PF05889_consen  123 LEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCM  202 (389)
T ss_dssp             -EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHH
T ss_pred             CeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHH
Confidence            999999863  2 345788999998864   5688889999888888866 99999999999999999999974111111


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                      ....     -..+.-.+|.+.-++-|.+..|-|.+.+...++.....   ....|+|.          -+.....-....
T Consensus       203 ~~i~-----~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~---vs~~YpGR----------as~sp~ld~~it  264 (389)
T PF05889_consen  203 HLIQ-----QAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILA---VSKEYPGR----------ASASPSLDLFIT  264 (389)
T ss_dssp             HHHH-----HHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHH---HHHTSHSH----------BTSHHHHHHHHH
T ss_pred             HHHH-----HHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHH---HHHHhhhh----------hhcccchHHHHH
Confidence            1100     01122236888888889999999988877766544321   22234433          333445577888


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +..+|..||........++-.++.++|++.
T Consensus       265 Ll~LG~~g~~~ll~~r~~~f~~l~erl~~~  294 (389)
T PF05889_consen  265 LLSLGCTGYGALLKERKASFPYLKERLKKW  294 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998753

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.39  E-value=7e-11  Score=119.35  Aligned_cols=227  Identities=19%  Similarity=0.126  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-CCcCcHHHHHhhcCc
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDKAAQYFNI  248 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-~~h~s~~~a~~~~Gi  248 (438)
                      .+.+.++.+.+++..+.+  .    +  .++++|+||+..|++.++.+..+ .+..+.+|+... ..|.+...++..-|.
T Consensus        77 ~~~~~~la~~l~~~~~~~--~----v--~f~~SGseA~e~Aik~ar~~~~~-~~~~r~~ii~~~~~yHG~t~~~~~~s~~  147 (395)
T PRK03715         77 NEPMAKLAGLLTQHSCFD--K----V--FFANSGAEANEGAIKLARKWGRK-HKNGAYEIITFDHSFHGRTLATMSASGK  147 (395)
T ss_pred             CHHHHHHHHHHhhccCCC--E----E--EEeCCcHHHHHHHHHHHHHHhhc-cCCCCcEEEEECCCcCCChHHHHhhcCC
Confidence            345666677777654432  2    4  89999999999999999875331 111234566555 557776666655543


Q ss_pred             EE---EEeeCCCCC----ccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhh
Q 013675          249 KL---WRVPVDKEF----RADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       249 ~v---~~v~~~~~~----~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ..   ...|..++.    ..|++++++++.+++++|++...+...|.+.|    +++|.++|++||+++++|++++|+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GR  227 (395)
T PRK03715        148 PGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGR  227 (395)
T ss_pred             cccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC
Confidence            21   111211111    24789999999888999999999888888877    99999999999999999999987532


Q ss_pred             hhhhhcCCCCCCCccCCC--CccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675          318 PFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~--gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                           .|.   -+.....  ..|+++++  |.+.++...|.++.+++ +..  +  ....     ...+..|. + ...+
T Consensus       228 -----tG~---~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~~-i~~--~--~~~~-----~~~T~~g~-p-l~~a  285 (395)
T PRK03715        228 -----TGT---LFAYELSGIEPDIMTLG--KGIGGGVPLAALLAKAE-VAV--F--EAGD-----QGGTYNGN-P-LMTA  285 (395)
T ss_pred             -----Ccc---hhhHhhcCCCCceeeeh--hhhhCCcceEEEEEccc-ccc--c--cCCC-----cCCCCCCC-H-HHHH
Confidence                 221   1111112  24887774  77555556777777654 321  1  0111     11122221 1 1234


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +..++++.+.+   .+..++..++.++|++.|+++
T Consensus       286 aala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l  317 (395)
T PRK03715        286 VGVAVISQLLA---PGFLEGVRARGEYLKEKLLEL  317 (395)
T ss_pred             HHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            55566665532   356777788888888888753

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.34  E-value=1.3e-10  Score=118.04  Aligned_cols=251  Identities=15%  Similarity=0.117  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH----
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR----  219 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~----  219 (438)
                      +.+...+++..+-.. ........+...+..++.+.+++++|.+..        ++.++|..||..++.++.....    
T Consensus       121 v~~a~~~ai~~yG~g-~~gSrl~~G~~~~h~~LE~~LA~f~g~e~a--------ll~sSGy~AN~~~i~aL~~~~~~~~~  191 (476)
T PLN02955        121 ISNAAANAAKEYGMG-PKGSALICGYTTYHRLLESSLADLKKKEDC--------LVCPTGFAANMAAMVAIGSVASLLAA  191 (476)
T ss_pred             HHHHHHHHHHHcCCC-CCCcCccccChHHHHHHHHHHHHHHCCCcE--------EEECChHHHHHHHHHHHhhccccccc
Confidence            344445555554322 222334445555666777789999998753        7889999999999988631100    


Q ss_pred             -HhcCC-CCCeEEecCCCcCcHHHHHhhc----CcEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCcccc
Q 013675          220 -NKRGI-TRPEMIIPVSAHSAYDKAAQYF----NIKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIID  290 (438)
Q Consensus       220 -~~~G~-~~~~Viv~~~~h~s~~~a~~~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~id  290 (438)
                       ..+.. +.+.|+.....|.|+...++..    +.++..++.+     |+++|+++++.   +.++|+....-++.|.+.
T Consensus       192 ~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdia  266 (476)
T PLN02955        192 SGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFA  266 (476)
T ss_pred             cccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCCCCceEEEEeCCCCCCCCcC
Confidence             00001 1257888888999999999887    5777777755     89999988853   456888888888999999


Q ss_pred             CHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch
Q 013675          291 PIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF  369 (438)
Q Consensus       291 di~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~  369 (438)
                      |+++|.++|++||+.++||.+++.+.+-   ..|.. ...+.. ...+|+++.+..|.+ |-.| |+++.++ +..+...
T Consensus       267 pL~eL~~L~~~~ga~LiVDEAH~~Gv~G---~~G~G~~e~~g~-~~di~ii~~TLsKA~-G~~G-Gfi~gs~-~~~~~l~  339 (476)
T PLN02955        267 PMEELSQLRKKYGFLLVIDDAHGTFVCG---ENGGGVAEEFNC-EADVDLCVGTLSKAA-GCHG-GFIACSK-KWKQLIQ  339 (476)
T ss_pred             CHHHHHHHHHHcCcEEEEcccccCceec---CCCCcHHHHhCC-CCCCcEEEEeCccch-hccC-ceeecHH-HHHHHHH
Confidence            9999999999999999999999876651   11111 111222 245799999999994 4433 6666554 3333221


Q ss_pred             hcccccCCCccCCCCccC-CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHH
Q 013675          370 VAVTEWSGGLYVSPTVAG-SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKG  426 (438)
Q Consensus       370 ~~~~~~~g~~~~~~~~~g-sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~  426 (438)
                      ...     .    ..+.+ .-+-...+++.++++.+-.+  .++.++..++.+++++.
T Consensus       340 ~~~-----~----~~ifStalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~  386 (476)
T PLN02955        340 SRG-----R----SFIFSTAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKAL  386 (476)
T ss_pred             HhC-----C----CCeecccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHh
Confidence            111     1    11111 11222344555666544222  24567777888888874

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.33  E-value=3.9e-11  Score=121.03  Aligned_cols=316  Identities=14%  Similarity=0.147  Sum_probs=202.0

Q ss_pred             hhHHHHHHHHhhhhhccccccc--cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHH
Q 013675           74 NKYIEAEKQKVVDKMQSGVKSK--REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINE  150 (438)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  150 (438)
                      +++++.-.-+.++++.++..++  +..+.+.+ +++.. .|++++++++..++.-|.++..=+.|....+    ..++.+
T Consensus        65 ~~ml~tlG~~dl~~l~~~~VP~~Ir~~~~l~~-~~~~~E~eml~~l~~ia~kNk~~ksfIGmGYyn~~vP----~~I~RN  139 (1001)
T KOG2040|consen   65 QQMLDTLGYKDLDELIEKTVPKSIRLKRPLKM-DKPLCESEMLQHLEDIASKNKIWKSFIGMGYYNTHVP----AVILRN  139 (1001)
T ss_pred             HHHHHhcChhhHHHHHHhhcchhhcccchhcC-CCCcCHHHHHHHHHHHHhhhhHHHHhhccccccccCc----HHHHHH
Confidence            3455544555555555444333  34455555 45677 9999999999777777876654444555555    445555


Q ss_pred             HHHH---hhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675          151 ACSM---FAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP  227 (438)
Q Consensus       151 ~~~~---~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~  227 (438)
                      .++.   +...+|++++.+++-.+-.-..+.+++++.|.|..+    .  .+..-||.|-...+++.+..    ++   .
T Consensus       140 ilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aN----A--SLLDEgTAaaEAm~l~~~~~----kr---k  206 (1001)
T KOG2040|consen  140 ILENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMAN----A--SLLDEGTAAAEAMALCNRIN----KR---K  206 (1001)
T ss_pred             hhhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccc----h--hhhccchhHHHHHHHHHhhc----cc---c
Confidence            5543   456678999999998877778899999999999876    3  66777888877777776643    22   4


Q ss_pred             eEEecCCCcCcHHHHHhhc----CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC
Q 013675          228 EMIIPVSAHSAYDKAAQYF----NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG  303 (438)
Q Consensus       228 ~Viv~~~~h~s~~~a~~~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~  303 (438)
                      +.++....|+-...+++..    |++++..+.        ++.. ...++...+++..|.+ .|.+.|..++.+.+++.|
T Consensus       207 k~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~--------~~~~-~s~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~  276 (1001)
T KOG2040|consen  207 KFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDI--------KEAD-YSSKDVSGVLVQYPDT-EGSVLDFDELVELAHANG  276 (1001)
T ss_pred             eEEecCCCCcchhhhhhccccccceeEEecCH--------HHhh-ccccceeEEEEEcCCC-CCcccCHHHHHHHhhccC
Confidence            6999999999977776654    566544332        2211 1234678888999987 799999999999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccc---hhcccccC
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQ---FVAVTEWS  376 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~---~~~~~~~~  376 (438)
                      ..+++-.-..+..+  +      -|   ....|+|+...|++.+|    ||++-.||+.++++-.|...   .-...|-.
T Consensus       277 s~vv~atDLLaLti--L------rp---PgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~  345 (1001)
T KOG2040|consen  277 SLVVMATDLLALTI--L------RP---PGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDAL  345 (1001)
T ss_pred             ceEEEeehhhHHHc--c------CC---hhhcCceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeeccc
Confidence            88665433322211  1      12   24568999999999984    44444666666643222110   00111111


Q ss_pred             CCcc-----CCCCccCCCCC------------chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          377 GGLY-----VSPTVAGSRPG------------GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       377 g~~~-----~~~~~~gsr~~------------~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      |...     .+....-+|.-            +.+++.|+.  +.|.+|++++.+++...+..|...|++.
T Consensus       346 gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyai--YHGp~gL~~IArrvh~~T~~l~~~l~~a  414 (1001)
T KOG2040|consen  346 GKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAI--YHGPHGLKEIARRVHNLTLILAEGLKNA  414 (1001)
T ss_pred             ccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhh--hcCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            1100     00000111211            112333333  4699999999999999999999999864

>PLN02624 ornithine-delta-aminotransferase

Probab=99.33  E-value=3e-10  Score=117.35  Aligned_cols=169  Identities=18%  Similarity=0.164  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC--CCeEEecCCC-cCcHHHHHhhcCc
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~--~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      ...++.+.++++++.+  .    +  .++++|++|+..|++.+|.+...++|.+  +..|+....+ |....-+...-+-
T Consensus       118 ~~~~la~~L~~~~~~~--~----~--~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~  189 (474)
T PLN02624        118 KFPEFAEYLTSMFGYD--M----V--LPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCD  189 (474)
T ss_pred             HHHHHHHHHHhhcCCC--e----E--EEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCC
Confidence            3445666677777654  2    4  8999999999999999987644334432  2345555444 3332222222110


Q ss_pred             ------------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEe
Q 013675          249 ------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVD  309 (438)
Q Consensus       249 ------------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD  309 (438)
                                  .+..+|.     -|++.+++.++   +++++|++..+++++|.+.|    +++|.++|++||+++++|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~D  264 (474)
T PLN02624        190 NEATRGFGPLLPGHLKVDF-----GDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIAD  264 (474)
T ss_pred             ccccccCCCCCCCceEeCC-----CCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence                        1223332     27899999886   45889999999999999877    999999999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEec
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRN  361 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~  361 (438)
                      +++.|+..     .|... .++......|+++++  |.+.++ ..+|+++.++
T Consensus       265 Ev~tG~Gr-----tG~~~-a~~~~~i~pDiv~ls--K~lggG~~pigav~~~~  309 (474)
T PLN02624        265 EIQTGLAR-----TGKML-ACDWEEVRPDVVILG--KALGGGVIPVSAVLADK  309 (474)
T ss_pred             ccccCcCc-----Ccchh-hHHhcCCCCCEEEec--ccccCCCCcceeeeecH
Confidence            99987532     11100 111122235888875  775444 4578877654

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.32  E-value=2.1e-10  Score=116.43  Aligned_cols=221  Identities=20%  Similarity=0.125  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-CCcCcHHHHHhhcC-----
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDKAAQYFN-----  247 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-~~h~s~~~a~~~~G-----  247 (438)
                      .++.+.++++.+.+  .    +  .++++|++|+..|++.+|.+.....+..+..|+..+ ..|.+...+...-|     
T Consensus        85 ~~l~~~l~~~~~~~--~----~--~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~  156 (403)
T PRK05093         85 LRLAKKLIDATFAE--R----V--FFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYS  156 (403)
T ss_pred             HHHHHHHHhhCCCC--E----E--EEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhh
Confidence            45666777776543  2    4  899999999999999998764332233345565554 45666544333211     


Q ss_pred             -------cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCcc-ccC----HHHHHHHHHHcCCeEEEeccccch
Q 013675          248 -------IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGI-IDP----IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       248 -------i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~-idd----i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                             .+++.+|.+     |++++++.+++++++|+++ |.+++|. +.+    +++|.++|++||+++++|++|+++
T Consensus       157 ~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~  230 (403)
T PRK05093        157 DGFGPKPADITHVPFN-----DLAAVKAVIDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGM  230 (403)
T ss_pred             hcCCCCCCCcEEeCCC-----CHHHHHHHhcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence                   123333332     8999999998889999888 4555554 433    899999999999999999999875


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                      ..     .|... .+.......|..++  .|.+.+...+|+++.+++ +.+.....   ..     ..+..+.  ....+
T Consensus       231 g~-----~g~~~-~~~~~~~~pdi~s~--sK~l~~G~rig~vv~~~~-i~~~l~~~---~~-----~~t~~~~--~~~~~  291 (403)
T PRK05093        231 GR-----TGDLF-AYMHYGVTPDILTS--AKALGGGFPIGAMLTTAE-IASHFKVG---TH-----GSTYGGN--PLACA  291 (403)
T ss_pred             CC-----Cccch-hhhhcCCCCCEEEe--cccccCCcceEEEEEcHH-HHhhcCCC---CC-----CCCCCCC--HHHHH
Confidence            32     11100 11111112355554  588654455888887643 32211000   00     0111111  11122


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++.++|+.+-.   .+..++..++.+++.+.|+++
T Consensus       292 aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~  323 (403)
T PRK05093        292 VAEAVFDIINT---PEVLEGVKARRQRFVDGLQKI  323 (403)
T ss_pred             HHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHH
Confidence            33444544422   244566777777888877764

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.32  E-value=1.9e-10  Score=115.56  Aligned_cols=167  Identities=19%  Similarity=0.164  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC-CcCcHHHHHhhcCc
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS-AHSAYDKAAQYFNI  248 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~-~h~s~~~a~~~~Gi  248 (438)
                      .+++.++.+++++..+.+  .    +  +++++|++|+..|++.++.+    .|  +++|++.+. .|.+........+.
T Consensus        70 ~~~~~~la~~l~~~~~~~--~----~--~~~~sG~~a~~~A~~~a~~~----~g--~~~vi~~~~~~Hg~~~~~~~~~~~  135 (377)
T PRK02936         70 NSLQEEVASLLAENSAGD--L----V--FFCNSGAEANEAALKLARKH----TG--KSKIVTFEQSFHGRTFGTMSATGQ  135 (377)
T ss_pred             CHHHHHHHHHHHhcCCCC--E----E--EEeCCcHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCCcHHhhhccCC
Confidence            456777777777776542  2    4  89999999999999987743    23  256777655 45554444433332


Q ss_pred             EEE---EeeCCCC--C--ccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhh
Q 013675          249 KLW---RVPVDKE--F--RADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       249 ~v~---~v~~~~~--~--~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ...   ..|..++  .  .-|++++++.+.+++++|++..+.++.|...+    +++|.++|++||+++++|+++.|+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~  215 (377)
T PRK02936        136 EKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGR  215 (377)
T ss_pred             ccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence            110   1111111  0  01789999999988999999999988887643    99999999999999999999977532


Q ss_pred             hhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEe
Q 013675          318 PFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYR  360 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r  360 (438)
                      .     |.   .+.....+  .|.++  ..|.+.+...+|+++.+
T Consensus       216 ~-----g~---~~~~~~~~~~~di~t--~sK~l~~G~~ig~v~~~  250 (377)
T PRK02936        216 T-----GT---LFAYEQFGLDPDIVT--VAKGLGNGIPVGAMIGK  250 (377)
T ss_pred             C-----ch---hhHHHhhCCCCcEEE--EcccccCCCccEEEEEc
Confidence            1     11   01111112  35554  57885543447877665

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.30  E-value=3.8e-10  Score=114.44  Aligned_cols=224  Identities=19%  Similarity=0.165  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC--CCeEEecCCC-cCcHHHHHhhcCc
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~--~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      ...++.+.+++++|.+  .    +  .++++|++|+..|++.+|.+...++|+.  ++.|+..... |.+...+...-|-
T Consensus        80 ~~~~l~~~l~~~~~~~--~----~--~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~  151 (401)
T TIGR01885        80 VFGEFAEYVTKLFGYD--K----V--LPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTD  151 (401)
T ss_pred             HHHHHHHHHHhhcCCC--E----E--EEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCC
Confidence            3445666788888753  2    4  8999999999999999987643333322  3567766666 4454444443221


Q ss_pred             ------------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEe
Q 013675          249 ------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVD  309 (438)
Q Consensus       249 ------------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD  309 (438)
                                  .+..+|.+     |+++++++++   +++.+|++..+.+++|.+.|    +++|.++|++||+++++|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~D  226 (401)
T TIGR01885       152 PDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIAD  226 (401)
T ss_pred             cccccccCCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence                        23333332     7899999885   45778888889999999887    999999999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      +++.|+..     .|... .++......|+++++  |.+.++ ..+|+++.+ +++.+....       . ....+..+.
T Consensus       227 Ev~~g~g~-----~G~~~-~~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~-~~i~~~~~~-------~-~~~~t~~~~  289 (401)
T TIGR01885       227 EIQTGLGR-----TGKLL-CVDHENVKPDIVLLG--KALSGGVYPVSAVLAD-DDVMLTIKP-------G-EHGSTYGGN  289 (401)
T ss_pred             chhhCCCc-----cchhh-HHhhcCCCCCEEEee--ccccCCCCCcEEEEEc-HHHHhhccC-------C-CCCCCCCCC
Confidence            99876432     11100 011112245777765  875443 346776665 343321100       0 001122221


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                        ....+++.++|+.+..++   ..++..++++++.+.|+++
T Consensus       290 --p~~~~aa~a~L~~i~~~~---l~~~~~~~~~~~~~~L~~l  326 (401)
T TIGR01885       290 --PLACAVAVAALEVLEEEK---LAENAEKLGEIFRDQLKKL  326 (401)
T ss_pred             --HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhc
Confidence              112335556666554333   4456777789999999876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.26  E-value=1.6e-09  Score=108.89  Aligned_cols=222  Identities=24%  Similarity=0.251  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc---
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI---  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi---  248 (438)
                      ..++.+.+.+++..+...   .+  .++++||+|+..|++.+|.+..      +..||....+ |-...-+...-|-   
T Consensus       101 ~v~~ae~L~~~~p~~~~~---~~--~f~~sGaeA~E~AiKiAr~~Tg------r~~viaf~~afHG~T~galslT~~~~~  169 (447)
T COG0160         101 YVELAEKLTALAPGSGLK---KV--FFGNSGAEAVEAAIKIARAYTG------RPGVIAFDGAFHGRTLGALSLTGSKPP  169 (447)
T ss_pred             HHHHHHHHHHhCCcccCC---eE--EecCCcHHHHHHHHHHHHHHhC------CCcEEEECCcccccchhhHHhccCccc
Confidence            344555677766553222   14  8999999999999999997633      2456665554 5444444433321   


Q ss_pred             ----------EEEEeeCCCCC------------ccCHHHHHHhhcc------CcEEEEEecCCCCCccccC----HHHHH
Q 013675          249 ----------KLWRVPVDKEF------------RADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       249 ----------~v~~v~~~~~~------------~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                                .+..+|....+            .-..+.+++.+..      +++++++...+...|.+.|    ++++.
T Consensus       170 ~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~  249 (447)
T COG0160         170 YKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALR  249 (447)
T ss_pred             cccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHH
Confidence                      37777765311            1234446665532      4789999999999998876    88999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE  374 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~  374 (438)
                      ++|++||+++++|+++.|+..     .|.   -|.+...|+  |+++++  |-+.+....|.++.|.+ +.        +
T Consensus       250 ~~~~~~gillI~DEVQtG~GR-----TG~---~fa~E~~gv~PDivt~a--K~ig~G~Pl~avv~r~e-i~--------~  310 (447)
T COG0160         250 KLCREHGILLIADEVQTGFGR-----TGK---MFAFEHFGVEPDIVTLA--KSLGGGLPLSAVVGRAE-IM--------D  310 (447)
T ss_pred             HHHHHcCCEEEEeccccCCCc-----ccc---chhhhhcCCCCCEEEec--ccccCCCceeEEeccHH-hc--------c
Confidence            999999999999999998764     343   355666665  999887  77666777888888754 22        1


Q ss_pred             cCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      |..+.     ..++ .+....++.+++..+..-.-+.+.++..++.++++++|.++
T Consensus       311 ~~~g~-----~~~T-f~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l  360 (447)
T COG0160         311 WPPGG-----HGGT-FGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEEL  360 (447)
T ss_pred             cCCcc-----cCCC-CCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence            32221     1122 22222234444433322222367778888888888888754

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.25  E-value=7.6e-10  Score=112.41  Aligned_cols=220  Identities=16%  Similarity=0.087  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCcE--
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNIK--  249 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi~--  249 (438)
                      ..++.+.++++++.+  .    +  .++++|+||+..|++.+|.+.....+..+.+|+..... |.....+...-|-.  
T Consensus        83 ~~~la~~l~~~~~~~--~----v--~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~  154 (406)
T PRK12381         83 VLRLAKKLIDATFAD--R----V--FFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKY  154 (406)
T ss_pred             HHHHHHHHHhhCCCC--e----E--EEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCccc
Confidence            345666777776543  3    5  89999999999999999876432211234667766555 44443333322311  


Q ss_pred             ----------EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc-----cCHHHHHHHHHHcCCeEEEeccccc
Q 013675          250 ----------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-----DPIQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       250 ----------v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-----ddi~~I~~la~~~~i~lhVD~a~gg  314 (438)
                                +..+|     ..|++++++.+++++++|++. |.+++|-+     +.+++|.++|++||+++++|+++.|
T Consensus       155 ~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG  228 (406)
T PRK12381        155 SQDFAPLPPDIRHAA-----YNDLNSASALIDDQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTG  228 (406)
T ss_pred             ccCCCCCCCCeeEeC-----CCCHHHHHHhccCCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhC
Confidence                      22222     237899999998888888886 66666643     3489999999999999999999977


Q ss_pred             hhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          315 FVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      +..     .|.   .+.....+  .|++++  .|.+.+...+|+++.+++ +.+.. .      ... ...+..++.  .
T Consensus       229 ~gr-----~G~---~~~~~~~~v~pDi~t~--sK~l~gG~~ig~~~~~~~-~~~~~-~------~~~-~~~t~~~~p--l  287 (406)
T PRK12381        229 VGR-----TGE---LYAYMHYGVTPDVLTT--AKALGGGFPIGAMLTTEK-CASVM-T------VGT-HGTTYGGNP--L  287 (406)
T ss_pred             CCC-----Ccc---hhhhHhhCCCCCEEEe--hhhhhCCCceEEEEEcHH-HHhhc-C------CCC-CCCCCCCCH--H
Confidence            632     111   11111122  466544  588655556888777643 32211 0      000 011111111  1


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..+++.++++.+..   .+..++..++.+++.+.|+++
T Consensus       288 ~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l  322 (406)
T PRK12381        288 ASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTI  322 (406)
T ss_pred             HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHH
Confidence            13344455555422   246677777888888887664

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.24  E-value=1.4e-09  Score=111.03  Aligned_cols=220  Identities=20%  Similarity=0.177  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI-  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi-  248 (438)
                      +...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+... .|  +.+|+....+ |....-+...-|- 
T Consensus       117 ~~~~~lAe~L~~~~p~~~~~----v--~f~~SGsEA~e~AlklAr~~t~~-~g--r~~ii~~~~~yHG~t~~~ls~t~~~  187 (442)
T TIGR03372       117 PLRALLAKTLAALTPGKLKY----S--FFCNSGTESVEAALKLAKAYQSP-RG--KFTFIAASGAFHGKSLGALSATAKP  187 (442)
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEeCCchHHHHHHHHHHHHHHhh-cC--CcEEEEECCCccCCCHHHhhccCCc
Confidence            34456777788876543332    4  89999999999999999976432 23  3567766655 4433333322111 


Q ss_pred             -----------EEEEeeCCCCCccCHHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEE
Q 013675          249 -----------KLWRVPVDKEFRADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLH  307 (438)
Q Consensus       249 -----------~v~~v~~~~~~~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lh  307 (438)
                                 .+..+|.+     |.+++++.++      +++.+|++......-|.+.|    ++++.++|++||+.++
T Consensus       188 ~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI  262 (442)
T TIGR03372       188 AFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLI  262 (442)
T ss_pred             ccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence                       23344432     6777777774      35788888888877888877    9999999999999999


Q ss_pred             EeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCC
Q 013675          308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT  384 (438)
Q Consensus       308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~  384 (438)
                      +|+++.|+..     .|.   -+.+...|  .|++++  .|.+.+. ..+|.++.+++ +.... .      ..    +.
T Consensus       263 ~DEV~tG~GR-----tG~---~~a~e~~gv~PDivt~--gK~lg~G~~Pigavv~~~~-i~~~~-~------~~----~~  320 (442)
T TIGR03372       263 LDEVQTGMGR-----TGK---MFACEHEGVQPDILCL--AKALGGGVMPIGATIATEA-VFSVL-F------DN----PF  320 (442)
T ss_pred             EeecccCCCc-----ccc---chhhhhcCCCCCeeee--hhhhcCCcccceEEEecHH-HHHhh-h------cc----Cc
Confidence            9999977542     221   12222334  387774  5875544 34677777643 32211 0      00    00


Q ss_pred             ccCCCCCch---HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          385 VAGSRPGGL---IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       385 ~~gsr~~~~---ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      ..++-.++.   .++..++|+.+-++   +..++..++.+++.+.|++
T Consensus       321 ~~~~T~~gnp~~~Aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~  365 (442)
T TIGR03372       321 LHTTTFGGNPLACAAALATINELLEK---NLPAQAAIKGDFLLDGFQQ  365 (442)
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH
Confidence            111222111   33444555555333   3445666677777777655

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.24  E-value=1.5e-09  Score=110.88  Aligned_cols=234  Identities=15%  Similarity=0.122  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHH-HHHhhcC-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYD-KAAQYFN-  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~-~a~~~~G-  247 (438)
                      +...++.+.+++++....+.    +  .|+++||||+..|++.+|.+...+ |. .+.+|+.-..+|.... -+....+ 
T Consensus        85 ~~~~~la~~l~~~~p~~~~~----v--~f~~sGseA~e~A~klar~~~~~~-~~~~r~~ii~~~~~yHG~t~~~ls~~~~  157 (423)
T PRK05964         85 EPAERLAQRLVALTPGGLDH----V--FFSDSGSVAVEVALKMALQYWRNR-GEPGRSRFLSLRGGYHGDTIGTMSVGDR  157 (423)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEcCCcCCccHHHHhcCCC
Confidence            34456777788876422222    5  899999999999999999764332 32 2467777666554432 2222111 


Q ss_pred             -----------cEEEEeeCCCC--CccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----HHHHHHHHHHcCCeE
Q 013675          248 -----------IKLWRVPVDKE--FRADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELGELALSHGTCL  306 (438)
Q Consensus       248 -----------i~v~~v~~~~~--~~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i~~I~~la~~~~i~l  306 (438)
                                 ..+..+|...+  ...+++++++.+.   +++.+|++.. .....|...+    +++|.++|++||+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~ll  237 (423)
T PRK05964        158 GGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLL  237 (423)
T ss_pred             ccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence                       02333443321  1223888888885   3566777766 4666676644    899999999999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCc
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTV  385 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~  385 (438)
                      ++|+++.|+..     .|... .++......|+++++  |++.++ ..+|+++.+ +++.+.... ...+ +.     ..
T Consensus       238 I~DEv~tg~gr-----~G~~~-a~~~~~v~pDi~~~~--K~l~gG~~p~~av~~~-~~i~~~~~~-~~~~-~~-----~~  301 (423)
T PRK05964        238 IFDEIATGFGR-----TGTLF-ACEQAGVSPDIMCLS--KGLTGGYLPLAATLCT-AEIFEAFYS-DDRA-KA-----FM  301 (423)
T ss_pred             EEechhhCCCc-----Ccchh-HHHhcCCCCCeeeee--hhhhcCcccceEEEEc-HHHHHhhhc-CCcc-cc-----cc
Confidence            99999977643     11100 011111124777664  987666 467886665 443322100 0000 00     01


Q ss_pred             cCCC-CCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          386 AGSR-PGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       386 ~gsr-~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .++- .+.  ..++..++++.+..   .+..++..++.+++++.|+++
T Consensus       302 ~~~T~~~np~~~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~l  346 (423)
T PRK05964        302 HSPSYTANPLACAAANASLDLFED---EPVLERVAALSAGLAEGLEPF  346 (423)
T ss_pred             cCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhh
Confidence            1111 111  13344455554433   245677777788888877665

>PRK07482 hypothetical protein; Provisional

Probab=99.24  E-value=1.2e-09  Score=112.45  Aligned_cols=176  Identities=14%  Similarity=0.090  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcH-HHHHhh--
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAY-DKAAQY--  245 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~-~~a~~~--  245 (438)
                      .+...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+... +|. .+.+|+.-..+|... .-+...  
T Consensus        93 ~~~~~~lAe~L~~~~p~~~~~----v--~f~~sGSEAve~AlKlAr~~~~~-~g~~~r~~Ii~~~~~YHG~t~ga~s~~~  165 (461)
T PRK07482         93 TEASITLSKRIIDRAPAGMSK----V--YYGLSGSDANETQIKLVWYYNNV-LGRPEKKKIISRWRGYHGSGVVTGSLTG  165 (461)
T ss_pred             CHHHHHHHHHHHHhCCCCcCE----E--EEeCchHHHHHHHHHHHHHHHHh-cCCCCCceEEEecCccCCccHhhhhccC
Confidence            345566777788877433333    4  89999999999999999976432 232 246677655544332 211111  


Q ss_pred             -------cC---cEEEEeeCCCCCc-------------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHH
Q 013675          246 -------FN---IKLWRVPVDKEFR-------------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQE  294 (438)
Q Consensus       246 -------~G---i~v~~v~~~~~~~-------------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~  294 (438)
                             ++   -.+..+|......             -+++++++.+.    +++++|++.......|.+.|    +++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~  245 (461)
T PRK07482        166 LSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPA  245 (461)
T ss_pred             CchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHH
Confidence                   11   1233333321101             14678888884    35788888887777777754    789


Q ss_pred             HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675          295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNR  362 (438)
Q Consensus       295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~  362 (438)
                      |.++|++||+.+++|+++.||..     .|.   .+.....|+  |+++++  |.+.++. ..|.++.+++
T Consensus       246 lr~lc~~~giLlI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~  306 (461)
T PRK07482        246 IQAVLKKYDILLIADEVVTGFGR-----LGS---MFGSDHYGIEPDLITVA--KGLTSAYAPLSGSIVGEK  306 (461)
T ss_pred             HHHHHHHhCCEEEEeccccCCCc-----Ccc---hhhHHhcCCCCCEEEEc--cccccCccccceeeecHH
Confidence            99999999999999999988753     121   122233344  888874  7755543 5677777654

>PRK12403 putative aminotransferase; Provisional

Probab=99.22  E-value=2e-09  Score=110.77  Aligned_cols=174  Identities=17%  Similarity=0.149  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec--CCCcCcHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP--VSAHSAYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~--~~~h~s~~~a~~~~Gi  248 (438)
                      +...++.+.++++++.+.+.    +  .++++||||+..|++.+|.+... .|.++..+++.  ...|.+...+...-|.
T Consensus        98 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGseA~e~AiklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~~~~s~s~~  170 (460)
T PRK12403         98 PAVIELSELLFSLLPGHYSH----A--IYTNSGSEANEVLIRTVRRYWQV-LGKPQKKIMIGRWNGYHGSTLAATALGGM  170 (460)
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHh-hCCCCCcEEEEECCCcCcccHhhhhcCCC
Confidence            44556667788887643232    4  89999999999999999976432 23221234333  3347665555443332


Q ss_pred             E-----------EEEeeCCCCC----c--------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675          249 K-----------LWRVPVDKEF----R--------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGE  297 (438)
Q Consensus       249 ~-----------v~~v~~~~~~----~--------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~  297 (438)
                      +           +..+|....+    .        .+.+++++.+.    +++++|++.......|.+.|    +++|.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~  250 (460)
T PRK12403        171 KFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQR  250 (460)
T ss_pred             ccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHH
Confidence            2           3334321100    0        12356666653    35778888888777788877    999999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEec
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRN  361 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~  361 (438)
                      +|++||+++++|++++||..     .|.   -+.+...|  .|++++  .|.+.++. .+|.++.++
T Consensus       251 lc~~~g~lLI~DEV~tGfGR-----tG~---~~a~e~~gv~PDiv~~--gK~lggG~~Piga~v~~~  307 (460)
T PRK12403        251 ICRQYDVLLCADEVIGGFGR-----TGE---WFAHEHFGFEPDTLSI--AKGLTSGYVPMGGLVLSK  307 (460)
T ss_pred             HHHHcCCEEEEeccccCCCc-----Cch---hhhhhhcCCCCCeEEE--cccccccccceEEEEECH
Confidence            99999999999999988743     121   11122223  388874  58755443 567667664

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.21  E-value=2.6e-09  Score=110.81  Aligned_cols=236  Identities=17%  Similarity=0.127  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecC-CCcCcHHHHHhhcC
Q 013675          171 RFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPV-SAHSAYDKAAQYFN  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~-~~h~s~~~a~~~~G  247 (438)
                      +...++.+.+++++.. +.+.    +  .|+++|+||+..|++.+|.+... .|. .+.+||... ..|.+...+...-|
T Consensus       133 ~~~~~lae~L~~~~~~~~~~~----v--~f~~SGsEA~e~AlKlAr~~~~~-~g~~~r~~iI~~~~~yHG~t~~a~slsg  205 (504)
T PLN02760        133 KPSLDLAKELLEMFTARKMGK----V--FFTNSGSEANDTQVKLVWYYNNA-LGRPNKKKFIARSKSYHGSTLISASLSG  205 (504)
T ss_pred             HHHHHHHHHHHhhcCCCCCCE----E--EEeCChHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCccCChHhhhhccC
Confidence            4455566677777532 2222    4  78999999999999999875432 232 245666554 45666554444333


Q ss_pred             cE------------EEEeeCCCCCc-------------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHH
Q 013675          248 IK------------LWRVPVDKEFR-------------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQE  294 (438)
Q Consensus       248 i~------------v~~v~~~~~~~-------------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~  294 (438)
                      ..            +..++.+..++             ...+++++.+.    +++++|++.......|.+.|    +++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~  285 (504)
T PLN02760        206 LPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEK  285 (504)
T ss_pred             ChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHH
Confidence            21            23333221111             12356777773    34778888888777888887    999


Q ss_pred             HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhc
Q 013675          295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVA  371 (438)
Q Consensus       295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~  371 (438)
                      |.++|++||+++++|+++.||..     .|.   -+.....|  .|+++++  |.+.++. ..|.++.++ ++.... ..
T Consensus       286 lr~lc~~~g~lLI~DEV~TGfGR-----tG~---~~a~e~~gv~PDivtlg--K~lggG~~PigAv~~~~-~i~d~~-~~  353 (504)
T PLN02760        286 IQAVLKKYDILFIADEVICAFGR-----LGT---MFGCDKYNIKPDLVSLA--KALSSAYMPIGAVLVSP-EISDVI-HS  353 (504)
T ss_pred             HHHHHHHcCCEEEecchhhCCcc-----cch---hhHHHhcCCCCcEEEec--ccccCCccccceEeecH-HHHhhh-hc
Confidence            99999999999999999977743     111   12122223  4877764  7754432 456667764 332211 00


Q ss_pred             ccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       372 ~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .....+......+..| . ....++..++|+.+.+   ++..++..++.++|++.|+++
T Consensus       354 ~~~~~~~~~h~~T~~g-n-Pl~~Aaala~Le~i~~---~~l~~~~~~~g~~l~~~L~~l  407 (504)
T PLN02760        354 QSNKLGSFAHGFTYSG-H-PVSCAVALEALKIYKE---RNIPEHVNKIAPRFQDGIKAF  407 (504)
T ss_pred             ccccccCcccCCCCCC-C-HHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH
Confidence            0000000000111111 1 1113344445554433   256778888888888888764

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.21  E-value=2.2e-09  Score=103.09  Aligned_cols=218  Identities=15%  Similarity=0.123  Sum_probs=150.0

Q ss_pred             CcchhhHHHHHHHHhhhhhccccccccCCCCCCCCCCCCc--HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHH
Q 013675           70 VPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLG--VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSL  147 (438)
Q Consensus        70 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~g~~--~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  147 (438)
                      ++.....|++|+.+....-+.++...+--.+..+-+++.+  -+++.....-   ...-++.+             ..+.
T Consensus        28 i~~rA~El~~eL~~~~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p---~lLd~~~f-------------p~Da   91 (475)
T KOG0258|consen   28 IVIRADELEKELKKGVKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYP---ELLDSPEF-------------PTDA   91 (475)
T ss_pred             hhhhHHHHHHHHHhcccCChHHHHhhcCCCHHHhCCCChhHHHHHHHHhcCh---hhcCCCCC-------------CHHH
Confidence            4555566777777764444444442222233445555555  4444443321   11011221             1223


Q ss_pred             HH--HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675          148 IN--EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT  225 (438)
Q Consensus       148 ~~--~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~  225 (438)
                      +.  +.+...+......|..++++.-+.+.+.+.+.+.=|.+.+.  .+|  .+|+|+|.|+...+..+..      | +
T Consensus        92 i~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p--~dI--~LT~GAS~ai~~il~l~~~------~-~  160 (475)
T KOG0258|consen   92 IKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADP--EDI--FLTTGASPAIRSILSLLIA------G-K  160 (475)
T ss_pred             HHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCH--HHe--eecCCCcHHHHHHHHHHhc------C-C
Confidence            32  22223333344567888998888888888888877753221  136  8999999999998888763      2 2


Q ss_pred             CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc-----CcEEEEEecCCCCCcccc---CHHHH
Q 013675          226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR-----NTVLIVGSAPGFPHGIID---PIQEL  295 (438)
Q Consensus       226 ~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~-----~t~~vv~~~~~~~tG~id---di~~I  295 (438)
                      ++-|++|-+-|+-+......+|...+..-+|+  +|.+|.++|++.+++     +++++++.+|.||||.+.   .+++|
T Consensus       161 ~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i  240 (475)
T KOG0258|consen  161 KTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGI  240 (475)
T ss_pred             CCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHH
Confidence            36799999999999999999999877766775  899999999999875     588999999999999884   58899


Q ss_pred             HHHHHHcCCeEEEeccccc
Q 013675          296 GELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg  314 (438)
                      ...|+++++.++.|++|--
T Consensus       241 ~~fa~~~~l~llaDEVYQ~  259 (475)
T KOG0258|consen  241 ICFAAEEGLVLLADEVYQD  259 (475)
T ss_pred             HHHHHHcCeEEechHHHHh
Confidence            9999999999999999743

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.20  E-value=1.5e-10  Score=115.19  Aligned_cols=240  Identities=13%  Similarity=0.063  Sum_probs=140.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-------cCCC
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-------PVSA  235 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-------~~~~  235 (438)
                      |..+|.+.++|+    .+++++|.+..        ++|..|+.+...+.++...    .+|   +++.+       +...
T Consensus        70 Y~gdpSv~~Lee----~vael~G~E~a--------lpthqGRgaE~Il~~~~~~----~~g---~e~g~~~~~~~v~hn~  130 (467)
T TIGR02617        70 YSGSRSYYALAE----SVKNIFGYQYT--------IPTHQGRGAEQIYIPVLIK----KRE---QEKGLDRSKMVAFSNY  130 (467)
T ss_pred             cccCchHHHHHH----HHHHHhCCceE--------EECCCCchHHHHHHHhhcc----ccc---ccccccccccccceEE
Confidence            556778887777    57889998742        7898899999999888763    134   44443       3333


Q ss_pred             cCcH-HHHHhhcCcEEEEeeCC----------CCCccCHHHHHHhhcc----CcEEEEEecCCCC-Cccc---cCHHHHH
Q 013675          236 HSAY-DKAAQYFNIKLWRVPVD----------KEFRADVKAIKKYINR----NTVLIVGSAPGFP-HGII---DPIQELG  296 (438)
Q Consensus       236 h~s~-~~a~~~~Gi~v~~v~~~----------~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~-tG~i---ddi~~I~  296 (438)
                      |+-- ...+...|+.++.++.+          .+|.+|+++|+++|++    +..++..+..+|. -|.+   +.+.+++
T Consensus       131 ~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~  210 (467)
T TIGR02617       131 FFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVY  210 (467)
T ss_pred             EEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHH
Confidence            4442 34566778888776432          2688999999999984    3333333333343 3545   4578999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhh--cCC-CCCCCcc---CCCCccEEEeCCCCCCCCCCCcEEEEEecc---ccccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKK--LGY-PIPPFDF---SVQGVTSISVDVHKYGLAPKGTSVVLYRNR---EIRKH  367 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~--~g~-~~p~~~~---~~~gvdsis~s~hK~~~~p~g~g~l~~r~~---~~~~~  367 (438)
                      ++|++||+++|.|+|--.=-.-|.+.  .++ ..+.-+.   -...+|++++|..|-+++|.| |+++.+++   ++.+.
T Consensus       211 ~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG-g~Lag~d~~~~~l~~~  289 (467)
T TIGR02617       211 EIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCFKDDSFFDVYTE  289 (467)
T ss_pred             HHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc-ceEEecchhHHHHHHH
Confidence            99999999999999842100001110  011 0110000   125679999999999999988 67778877   43333


Q ss_pred             chhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       368 ~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .-.....+.|.     ...|...|--+-++...|...   --.+.+++.....+||.+.|.+.
T Consensus       290 ~~~~~i~~EGf-----~tYGGlagrd~ea~a~Gl~e~---~~~~yl~~ri~qv~yl~~~L~~~  344 (467)
T TIGR02617       290 CRTLCVVQEGF-----PTYGGLEGGAMERLAVGLYDG---MNLDWLAYRINQVQYLVNGLEEI  344 (467)
T ss_pred             HHhhcccccCC-----cCcCchhHHHHHHHHhhhhhc---ccHHHHHHHHHHHHHHHHHHHhC
Confidence            21111112221     112223332233333333222   12344556666677788887664

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.20  E-value=7.2e-10  Score=108.32  Aligned_cols=191  Identities=20%  Similarity=0.203  Sum_probs=130.6

Q ss_pred             HHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-----CCcCcHHHHHhhcCcEEEEe
Q 013675          179 MTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-----SAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       179 ~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-----~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      ..+.+.+....+     .++++++.+.|+++.+.++..      +   .+++++.     ..|+++...++..|.++++|
T Consensus        73 ~~~~~~~~~~ae-----a~~ivnnn~aAVll~~~al~~------~---~EvVis~g~lV~gg~~~v~d~~~~aG~~l~Ev  138 (395)
T COG1921          73 LAELLCGLTGAE-----AAAIVNNNAAAVLLTLNALAE------G---KEVVVSRGELVEGGAFRVPDIIRLAGAKLVEV  138 (395)
T ss_pred             HHHHHhcccchh-----heeeECCcHHHHHHHHhhhcc------C---CeEEEEccccccCCCCChhHHHHHcCCEEEEe
Confidence            334445554333     348999999999988888763      2   3554432     58999999999999999887


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc--cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII--DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i--ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      -.  ..+....+++.+|+++|+++.-++.++. |..  -+++++.++||++|+++++|.+.|..+-+   ..+    .-.
T Consensus       139 G~--tn~t~~~d~~~AIne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~---e~~----l~~  208 (395)
T COG1921         139 GT--TNRTHLKDYELAINENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDK---EPD----LRE  208 (395)
T ss_pred             cc--cCcCCHHHHHHHhccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCcccccc---ccc----hhH
Confidence            54  4568899999999999998877776653 443  35788999999999999999998754321   000    112


Q ss_pred             cCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC-CchHHHHHHHHHHHcH
Q 013675          332 FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP-GGLIAGAWAALMSLGQ  406 (438)
Q Consensus       332 ~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~-~~~ia~~~aal~~~g~  406 (438)
                      .-..|+|.+++|++|.+.||. +|+++-| +++......           .+.-.+-|- ...++++.++|+.+-.
T Consensus       209 ~la~GaDLV~~SgdKllgGPq-aGii~Gk-KelI~~lq~-----------~~l~Ralrv~K~tla~l~~aLe~y~~  271 (395)
T COG1921         209 ALALGADLVSFSGDKLLGGPQ-AGIIVGK-KELIEKLQS-----------HPLKRALRVDKETLAALEAALELYLQ  271 (395)
T ss_pred             HHhcCCCEEEEecchhcCCCc-cceEech-HHHHHHHHh-----------hhhhhhhhcCcHhHHHHHHHHHHHcC
Confidence            235689999999999987777 6776555 444322110           011111222 2347899999988854

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.19  E-value=2.2e-09  Score=110.33  Aligned_cols=221  Identities=18%  Similarity=0.183  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH-HHHHhhcCcE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY-DKAAQYFNIK  249 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~-~~a~~~~Gi~  249 (438)
                      +...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+... +|  +.+|+....+|... .-+...-|-.
T Consensus       124 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGsEAve~AlklAr~~t~~-~g--r~~ii~~~~~yHG~t~~~ls~~~~~  194 (459)
T PRK11522        124 PLRAMLAKTLAALTPGKLKY----S--FFCNSGTESVEAALKLAKAYQSP-RG--KFTFIATSGAFHGKSLGALSATAKS  194 (459)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCCchHHHHHHHHHHHHHhcc-CC--CcEEEEecCCCCCCcHHHhhhcCCc
Confidence            34555666777776543333    4  89999999999999999976432 23  34677666554443 3333222211


Q ss_pred             ------------EEEeeCCCCCccCHHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEE
Q 013675          250 ------------LWRVPVDKEFRADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLH  307 (438)
Q Consensus       250 ------------v~~v~~~~~~~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lh  307 (438)
                                  +..+|.     -|.+++++.++      +++++|++.......|.+.|    ++++.++|++||+.++
T Consensus       195 ~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI  269 (459)
T PRK11522        195 TFRKPFMPLLPGFRHVPF-----GNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLI  269 (459)
T ss_pred             ccccCCCCCCCCCcccCC-----CCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence                        122222     26788888885      35678888888888888877    9999999999999999


Q ss_pred             EeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCC
Q 013675          308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT  384 (438)
Q Consensus       308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~  384 (438)
                      +|+++.|+..     .|.   -+.+...|  .|++++  .|.+.+. ..+|.++.+++ +... +.      .+    +.
T Consensus       270 ~DEV~tG~GR-----tG~---~~a~e~~gv~PDivt~--gK~lggG~~Pigav~~~~~-i~~~-~~------~~----~~  327 (459)
T PRK11522        270 LDEVQTGMGR-----TGK---MFACEHENVQPDILCL--AKALGGGVMPIGATIATEE-VFSV-LF------DN----PF  327 (459)
T ss_pred             eccceecCCc-----cch---hhhhhccCCCCCEEEe--chhhhCCCccceeEEEcHH-HHHH-hc------cC----Cc
Confidence            9999977532     121   11222233  387765  4775544 34677777643 2211 10      00    00


Q ss_pred             ccCCCCCc---hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          385 VAGSRPGG---LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       385 ~~gsr~~~---~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..++-.+.   ..++..++|+.+-++   +..++..++.++|.+.|+++
T Consensus       328 ~~~~T~~gnp~~~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l  373 (459)
T PRK11522        328 LHTTTFGGNPLACAAALATINVLLEQ---NLPAQAEQKGDYLLDGFRQL  373 (459)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHH
Confidence            11111111   134555666665433   45677778888888887654

>PRK05965 hypothetical protein; Provisional

Probab=99.19  E-value=4.4e-09  Score=108.26  Aligned_cols=234  Identities=16%  Similarity=0.135  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcH-HHHHhhc--
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAY-DKAAQYF--  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~-~~a~~~~--  246 (438)
                      +...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+... +|. .+.+|+.-..+|... .-+....  
T Consensus        90 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGSEAve~AlKlAr~~~~~-~g~~~r~kii~~~~~YHG~t~~a~s~t~~  162 (459)
T PRK05965         90 EPAIRLAAKLAERAPGSLNH----V--YFTLGGSDAVDSAVRFIRHYWNA-TGRPSKKQFISLERGYHGSSSVGAGLTAL  162 (459)
T ss_pred             HHHHHHHHHHHhhCCCCcCE----E--EEeCChhHHHHHHHHHHHHHHHh-cCCCCccEEEEecCCcCcccHHHHHhcCC
Confidence            33446667777776433232    4  89999999999999999986543 342 245677666554333 2222221  


Q ss_pred             -------Cc---EEEEeeCCCCC----ccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675          247 -------NI---KLWRVPVDKEF----RAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       247 -------Gi---~v~~v~~~~~~----~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                             |.   .+..+|....+    .-|        ++++++.+.    +++.+|++.......|.+.|    +++|.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr  242 (459)
T PRK05965        163 PAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMR  242 (459)
T ss_pred             chhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHH
Confidence                   11   12334332111    113        367888785    45788888888777787654    78999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecccccccchhccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      ++|++||+.+++|+++.||..     .|.   .+.+...|+  |+++++  |.+.++. ..|.++.+++-...  +....
T Consensus       243 ~lc~~~gillI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~--~~~~~  310 (459)
T PRK05965        243 EACRELGILFVADEVITGFGR-----TGP---LFACEAEGVVPDLMTVA--KGLTSGYVPMGAVLMSDHVYQG--IADGA  310 (459)
T ss_pred             HHHHHcCCEEEEechhccCcc-----Cch---hhhHhhcCCCCCeEEec--hhhccCCcceeEEEEcHHHHHH--Hhccc
Confidence            999999999999999988753     121   122223343  888885  7755553 57877877542211  10000


Q ss_pred             ccCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          374 EWSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       374 ~~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...+..    ...++-.+..  .++..++|+.+-++   +..++..++.++|.+.|+++
T Consensus       311 ~~~~~~----~h~~T~~gnpl~~Aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l  362 (459)
T PRK05965        311 GAAAPV----GHGYTYSAHPVSAAVGLEVLRLYHEG---GLLANGQKAGPRFAAGLDAL  362 (459)
T ss_pred             cccccc----cccCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhh
Confidence            000000    0111222222  23344455444333   45567777888888888764

>PRK06541 hypothetical protein; Provisional

Probab=99.19  E-value=4.6e-09  Score=108.08  Aligned_cols=230  Identities=19%  Similarity=0.153  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      +...++.+.+++++..+.+.    +  .++++||||+..|++.+|.+... .|. .+.+|+.-..+ |....-+....|.
T Consensus        95 ~~~~~la~~l~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~~a~s~~~~  167 (460)
T PRK06541         95 PPAIELAERLAALAPGDLNR----V--FFTTGGSEAVESAWKLAKQYFKL-TGKPGKHKVISRAIAYHGTTQGALAITGL  167 (460)
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEcCCcHHHHHHHHHHHHHHHHh-cCCCCccEEEEEcCcccCcchhhhcCcCC
Confidence            33445666777776433233    5  89999999999999999976432 221 14567665554 4333333322111


Q ss_pred             ------------EEEEeeCCCC-----CccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675          249 ------------KLWRVPVDKE-----FRAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       249 ------------~v~~v~~~~~-----~~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                                  .+..+|....     +.-|        ++.+++.++    +++++|++....++.|.+.|    +++|
T Consensus       168 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l  247 (460)
T PRK06541        168 PAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERV  247 (460)
T ss_pred             hhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence                        2333443221     1112        367888875    34667777776888899887    9999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~  372 (438)
                      .++|++||+.+++|+++.||..     .|.   .+.....|  .|++++  .|.+.++. ..|.++.+++.......   
T Consensus       248 ~~lc~~~g~llI~DEV~tGfGR-----~G~---~~a~~~~gv~PDivt~--gK~l~~G~~pigav~~~~~i~~~~~~---  314 (460)
T PRK06541        248 REICDRYDVLLVSDEVICAFGR-----LGE---MFGCERFGYVPDIITC--AKGITSGYSPLGAMIASDRLFEPFLD---  314 (460)
T ss_pred             HHHHHHcCCEEEEechhhCCCc-----Cch---hhhhhhcCCCCCEEEe--cccccCCccceeEEEEcHHHHHHhhc---
Confidence            9999999999999999977642     121   11222223  477764  58755443 46777777543221110   


Q ss_pred             cccCCCccCCCCccC-CCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          373 TEWSGGLYVSPTVAG-SRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       373 ~~~~g~~~~~~~~~g-sr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                       . . .    ....+ +-.+..  .++..++++.+..+   +..++..++.++|.+.|+++
T Consensus       315 -~-~-~----~~~~~~T~~gnp~~~aaala~l~~l~~~---~~~~~~~~~g~~l~~~L~~l  365 (460)
T PRK06541        315 -G-P-T----MFLHGYTFGGHPVSAAVALANLDIFERE---GLLDHVRDNEPAFRATLEKL  365 (460)
T ss_pred             -C-C-C----ccccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHh
Confidence             0 0 0    01111 222211  33344445444333   45577778888888888765

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.17  E-value=4.2e-09  Score=108.12  Aligned_cols=222  Identities=20%  Similarity=0.205  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhcC-
Q 013675          171 RFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYFN-  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~G-  247 (438)
                      +...++.+.+++++.... +.    +  .++++||||+..|++.+|.+    .|  +++|+....+|..+. -+...-+ 
T Consensus        99 ~~~~~la~~l~~~~p~~~~~~----v--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~al~~~~~  166 (443)
T PRK06058         99 EGYVAVAEQLNRLTPGDHEKR----S--ALFNSGAEAVENAVKIARSY----TG--RQAVVVFDHAYHGRTNLTMALTAK  166 (443)
T ss_pred             HHHHHHHHHHHHhCCCCCCCE----E--EEeCCcHHHHHHHHHHHHHh----hC--CCeEEEECCCcCcChHHHHhhcCC
Confidence            445567778888875432 22    4  88999999999999999865    23  357777666544433 3332211 


Q ss_pred             -------c-----EEEEeeCCCCCc------c--------CHHHHHHhhc-cCcEEEEEecCCCCCccccC----HHHHH
Q 013675          248 -------I-----KLWRVPVDKEFR------A--------DVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       248 -------i-----~v~~v~~~~~~~------~--------d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                             .     .+..+|....++      .        ..+.+++.+. +++++|++...+...|.+.|    +++|.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr  246 (443)
T PRK06058        167 SMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALL  246 (443)
T ss_pred             CcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHH
Confidence                   1     233333211111      1        1334555554 46778887766665666654    89999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE  374 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~  374 (438)
                      ++|++||+.++.|+++.||...     |.   .+.....|  .|.++++  |.+.++...|+++.+++ +.+.. .  ..
T Consensus       247 ~lc~~~gillI~DEV~tGfgRt-----G~---~fa~~~~gv~PDiv~~g--K~l~~G~Pi~av~~~~~-i~~~~-~--~~  312 (443)
T PRK06058        247 EWCRENGVVFIADEVQTGFART-----GA---WFACEHEGIVPDLITTA--KGIAGGLPLSAVTGRAE-IMDAP-H--PG  312 (443)
T ss_pred             HHHHHcCCEEEEeccccCCCcC-----hh---hhHHHhcCCCCCEEEEc--ccccCCCccEEEEEcHH-HHhhc-c--CC
Confidence            9999999999999999887431     11   11112223  3888875  88655566888887654 32211 0  00


Q ss_pred             cCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          375 WSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .         ..++-.+..  .++..++|+.+.+   .+..++..++.+++.+.|+++
T Consensus       313 ~---------~~~T~~gnpl~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l  358 (443)
T PRK06058        313 G---------LGGTYGGNPVACAAALAAIETIEE---DDLVARARQIEALMTDRLRAL  358 (443)
T ss_pred             C---------CCCCCCCCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHH
Confidence            0         011111211  2334444444432   245667777788888888653

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.17  E-value=1.9e-09  Score=108.33  Aligned_cols=151  Identities=19%  Similarity=0.162  Sum_probs=100.0

Q ss_pred             eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCcHHHHHhhcCcEEEE------eeCCCC-CccCHHHHHHh
Q 013675          198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSAYDKAAQYFNIKLWR------VPVDKE-FRADVKAIKKY  269 (438)
Q Consensus       198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s~~~a~~~~Gi~v~~------v~~~~~-~~~d~~~Le~~  269 (438)
                      .++++||+|+..|++.+|..    .|  +++|++. ...|.+...++...|.+...      ++.... -..|++++++.
T Consensus        88 ~~~~SGseA~~~Al~~ar~~----~~--~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~  161 (375)
T PRK04260         88 FFCNSGAEANEAAIKIARKA----TG--KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKAL  161 (375)
T ss_pred             EEcCccHHHHHHHHHHHHHh----cC--CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHh
Confidence            79999999999999999854    22  2566665 55577665555443321110      000000 12489999999


Q ss_pred             hccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCC
Q 013675          270 INRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVH  345 (438)
Q Consensus       270 I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~h  345 (438)
                      +++++++|++..+++++|.+.+    +++|.++|+++|+++++|+++.|+..     .|. ...+.......|++  +..
T Consensus       162 l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~-----~g~-~~~~~~~~~~pdi~--t~s  233 (375)
T PRK04260        162 VNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGR-----TGK-LYAFEHYGIEPDIF--TLA  233 (375)
T ss_pred             cCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc-----ccc-hhhhHhhCCCCCEE--Eec
Confidence            9888999999999999999855    89999999999999999999976532     111 00111111123655  457


Q ss_pred             CCCCCCCCcEEEEEecc
Q 013675          346 KYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       346 K~~~~p~g~g~l~~r~~  362 (438)
                      |.+.++...|+++.+++
T Consensus       234 K~l~~G~~ig~~~~~~~  250 (375)
T PRK04260        234 KGLANGVPVGAMLAKSS  250 (375)
T ss_pred             ccccCCcceEEEEEcHH
Confidence            97543345788888743

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.16  E-value=8.9e-10  Score=102.36  Aligned_cols=185  Identities=20%  Similarity=0.291  Sum_probs=122.1

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCc
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSA  238 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s  238 (438)
                      ...|+..++-..+...+..++.+-+|++-..  .++  .+|+|+..+...+.....-+.  ..|. ..+|+.| .+.|-.
T Consensus        67 ~cnY~~pQG~~~li~ala~~l~~~ygwnit~--~NI--alTnGSQs~fFYlfNlF~G~~--sdG~-~k~illPLaPeYiG  139 (417)
T COG3977          67 LCNYDGPQGKAVLIDALAKMLRREYGWNITA--QNI--ALTNGSQSAFFYLFNLFAGRR--SDGT-EKKILLPLAPEYIG  139 (417)
T ss_pred             HhcCCCCcchhHHHHHHHHHHHHHhCCCCcc--cee--eecCCccchHHHHHHHhcCcc--CCCc-ceeEeeccChhhcc
Confidence            4457778888889999999999999987432  136  888888888777665543211  1232 2356655 444544


Q ss_pred             HHHHHhhcCc------EEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCcccc---CHHHHHHHHHHcCCeEEE
Q 013675          239 YDKAAQYFNI------KLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGELALSHGTCLHV  308 (438)
Q Consensus       239 ~~~a~~~~Gi------~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id---di~~I~~la~~~~i~lhV  308 (438)
                      +..++---.+      ++..+|-.. .+++|.++|+  |.+.|.+|+++-|+||||.+-   .+.+|.++|++||+++++
T Consensus       140 Y~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliI  217 (417)
T COG3977         140 YADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLII  217 (417)
T ss_pred             ccccccCccceeeccCCcccccccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEE
Confidence            4433321111      222222111 4568888775  458899999999999999883   477888999999999999


Q ss_pred             eccccchhhhhhhhcCCCCCCCccCC----CCc-cEEEeCCCCCCCCCCCcEEEEEeccccc
Q 013675          309 DLCLGGFVLPFAKKLGYPIPPFDFSV----QGV-TSISVDVHKYGLAPKGTSVVLYRNREIR  365 (438)
Q Consensus       309 D~a~gg~~~pf~~~~g~~~p~~~~~~----~gv-dsis~s~hK~~~~p~g~g~l~~r~~~~~  365 (438)
                      |.|||   .||        |.+.|..    ++- -+.++|..|.|.-+..||+++.+ +++.
T Consensus       218 DnAYg---~PF--------P~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIan-e~vi  267 (417)
T COG3977         218 DNAYG---VPF--------PGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIAN-EKVI  267 (417)
T ss_pred             ecccC---CCC--------CceecccccccCCCCEEEEeehhhcCCCCcceeEEEcc-HHHH
Confidence            99997   332        2222221    222 46788999998888889986655 4443

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.15  E-value=7.9e-09  Score=104.84  Aligned_cols=221  Identities=17%  Similarity=0.112  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEecCCC-cCcHHHHHhhcCcE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVSA-HSAYDKAAQYFNIK  249 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~~~~-h~s~~~a~~~~Gi~  249 (438)
                      ..++.+.++++.... +.    +  .++++||||+..|++.+|.+... +|.  .+.+|+.-..+ |....-+....|-.
T Consensus        84 ~~~la~~L~~~~~~~-~~----v--~f~~sGseA~e~AlklAr~~~~~-~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~  155 (408)
T PRK04612         84 PLKLAEELVTASRFA-EK----V--FLCNSGTEANEAAIKLVRKWASS-QGRPADKRVIVTFRGSFHGRTLAAVTATAQP  155 (408)
T ss_pred             HHHHHHHHHhhCCCC-CE----E--EEcCchHHHHHHHHHHHHHHHHh-hCCCCCCcEEEEECCCcCCccHHHHHhcCCc
Confidence            445666777775432 22    5  89999999999999999986532 332  24567766555 44433333322211


Q ss_pred             ------------EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc-cC----HHHHHHHHHHcCCeEEEeccc
Q 013675          250 ------------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-DP----IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       250 ------------v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-dd----i~~I~~la~~~~i~lhVD~a~  312 (438)
                                  ++.+|.     -|++++++++.+++.+.++.-|...+|.+ .+    +++|.++|++||+++++|+++
T Consensus       156 ~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~  230 (408)
T PRK04612        156 KYQEGYEPLPGGFRYVDF-----NDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQ  230 (408)
T ss_pred             ccccCCCCCCCCceEcCC-----CCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence                        122222     27899999997555555555555556544 32    889999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~  390 (438)
                      +|+..     .|.   .+.....++  |++++  .|.+.++..+|+++.+++ +.... ..  ...     ..+..|.  
T Consensus       231 tg~gr-----~G~---~~a~~~~~~~pdi~t~--~K~l~~G~piga~~~~~~-~~~~~-~~--~~~-----~~t~~~~--  289 (408)
T PRK04612        231 CGMGR-----TGT---LFAHWQEQVTPDIVTL--AKALGGGFPIGAMLAGPK-VAETM-QF--GAH-----GTTFGGN--  289 (408)
T ss_pred             cCCCc-----CCc---hhhhhhcCCCCCEEEE--cchhcCCCceEEEEECHH-HHhhh-cC--CCc-----CCCCCCC--
Confidence            87543     121   111122233  55555  588555456788777643 22111 00  000     1111121  


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ....++..++|+.+.+   .+..++..++.+++.+.|+++
T Consensus       290 p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l  326 (408)
T PRK04612        290 PLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEAL  326 (408)
T ss_pred             HHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            1123344455554432   356677777888888877654

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.15  E-value=3.7e-09  Score=108.32  Aligned_cols=224  Identities=18%  Similarity=0.123  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC-CcCcHHHHHhhcC--
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS-AHSAYDKAAQYFN--  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~-~h~s~~~a~~~~G--  247 (438)
                      +...++.+.+++++.-..+.    +  .|+++|+||+..|++.+|.+    .|  +++|+.-.. .|.+...+....+  
T Consensus        86 ~~~~~la~~L~~~~~~~~~~----v--~f~~SGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~s~~~~~  153 (433)
T PRK08117         86 ESILKLAEELAEITPGGLDC----F--FFSNSGAEAIEGALKLAKHV----TK--RPYIISFTGCFHGRTLGALSVTTSK  153 (433)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCcHHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCcCHHHHhhcCCC
Confidence            34556667788887322222    4  89999999999999999865    23  355665544 4555444322211  


Q ss_pred             -----------cEEEEeeCCCCCc------------cCHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHH
Q 013675          248 -----------IKLWRVPVDKEFR------------ADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       248 -----------i~v~~v~~~~~~~------------~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                                 -.+..+|....+.            -|++++++.++     +++.+|++.......|.+.|    +++|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l  233 (433)
T PRK08117        154 SKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKL  233 (433)
T ss_pred             ccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHH
Confidence                       0233444432111            25677777764     35788888888888888888    9999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      .++|++||+++++|++++|+..     .|.   .+.....|  .|++  +..|.+.++..+|+++.+++ +....     
T Consensus       234 ~~lc~~~g~llI~DEv~tG~gr-----~G~---~~~~~~~gv~pDi~--t~sK~lg~G~pigav~~~~~-i~~~~-----  297 (433)
T PRK08117        234 REICDRHGILLIFDEVQTGFGR-----TGE---WFAAQTFGVVPDIM--TIAKGIASGLPLSAVVASKE-LMEQW-----  297 (433)
T ss_pred             HHHHHHcCCEEEEecchhccCc-----ccc---chhHhhcCCCCCEe--ehhhhccCCCcceeEEEcHH-HHhhc-----
Confidence            9999999999999999987543     121   11111123  3654  45688655455788777643 32211     


Q ss_pred             ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                        .... ...+..|  +....++..++++.+..+   +..++..++.+++++.|+++
T Consensus       298 --~~~~-~~~T~~~--np~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l  346 (433)
T PRK08117        298 --PLGS-HGTTFGG--NPVACAAALATLEVIKEE---KLLDNANEMGAYALERLEVL  346 (433)
T ss_pred             --cCCC-CCCCCCc--CHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHH
Confidence              0000 0111111  111233444555544332   45566667777777777653

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.14  E-value=8.4e-09  Score=105.95  Aligned_cols=232  Identities=19%  Similarity=0.151  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHH-HHHhhcCc-
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYD-KAAQYFNI-  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~-~a~~~~Gi-  248 (438)
                      ...++.+.++++++.+.+.    +  .|+++||||+..|++.++.+... +|. .+.+|+.-..+|.... -+...-|- 
T Consensus        98 ~~~~lAe~L~~~~p~~~~~----v--~f~~sGseAve~AlKlA~~~~~~-rg~~~r~~Ii~~~~~yHG~t~gals~~~~~  170 (453)
T PRK06943         98 PAIELAERLAALTGGTLGH----A--FFASDGASAVEIALKMSFHAWRN-RGRGDKREFVCLANGYHGETIGALGVTDVA  170 (453)
T ss_pred             HHHHHHHHHHHhCCCCCCE----E--EEeCCCHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCcCCCcHHhhcccCCh
Confidence            4456777788877543232    5  89999999999999999876432 232 2456776665544322 22221111 


Q ss_pred             -----------EEEEeeCCCCC------------ccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----HHHHHH
Q 013675          249 -----------KLWRVPVDKEF------------RADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELGE  297 (438)
Q Consensus       249 -----------~v~~v~~~~~~------------~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i~~I~~  297 (438)
                                 .+..+|.....            .-|++++++.++   +++.+|++.. .....|.+.|    ++++.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~  250 (453)
T PRK06943        171 LFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRA  250 (453)
T ss_pred             hhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHH
Confidence                       23334432110            013577888885   4678888887 3666777654    899999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccc
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTE  374 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~  374 (438)
                      +|++||+.+++|+++.|+..     .|.   .+.+...|+  |+++++  |.+.++ ..+|.++.+++ +... +. ...
T Consensus       251 lc~~~gillI~DEV~TG~GR-----tG~---~fa~~~~gv~PDivt~g--Kgl~gG~~Pi~av~~~~e-i~~~-~~-~~~  317 (453)
T PRK06943        251 LCDRYGVHLIADEIAVGCGR-----TGT---FFACEQAGVWPDFLCLS--KGISGGYLPLSLVLSRDA-IFAA-FY-DDD  317 (453)
T ss_pred             HHHHcCCEEEeechhhCCCC-----Ccc---hhHHHhCCCCCCeEeee--hhhccCcccceEEEEcHH-HHHh-hc-ccC
Confidence            99999999999999988743     121   122223343  888884  765444 25777787754 2211 00 000


Q ss_pred             cCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          375 WSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..+..    ...++-.+..  .++..++|+.+-++   +..++..++.++|.+.|+++
T Consensus       318 ~~~~~----~~~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l  368 (453)
T PRK06943        318 VTRGF----LHSHSYTGNPLACRAALATLDLFAED---DVLARNARKSARLRAALAPL  368 (453)
T ss_pred             ccCCc----cCCCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence            00000    0111222222  23344445444333   45566667777777777654

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.14  E-value=4e-09  Score=104.41  Aligned_cols=175  Identities=22%  Similarity=0.188  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhc----
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYF----  246 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~----  246 (438)
                      ...++.+.++++++...+.    +  .++++||+|+..|++.++.+........+.+|+....+ |....-+...-    
T Consensus        60 ~~~~la~~L~~~~p~~~~~----v--~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~  133 (339)
T PF00202_consen   60 EAAELAEKLAELFPGGLDR----V--FFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPP  133 (339)
T ss_dssp             HHHHHHHHHHHHSSTTEEE----E--EEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTH
T ss_pred             chhhhhhhhhhccccccce----e--eeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcc
Confidence            3456667788888443332    5  89999999999999999943221111114577776655 43332222221    


Q ss_pred             --------CcEEEEeeCCCCCc-----cCHHHHHHhh----ccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCe
Q 013675          247 --------NIKLWRVPVDKEFR-----ADVKAIKKYI----NRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTC  305 (438)
Q Consensus       247 --------Gi~v~~v~~~~~~~-----~d~~~Le~~I----~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~  305 (438)
                              .-.+..+|.+....     -..+++++.+    .++..+|++.......|.+.+    +++|.++|++||++
T Consensus       134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gil  213 (339)
T PF00202_consen  134 YRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGIL  213 (339)
T ss_dssp             HHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-E
T ss_pred             ccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccc
Confidence                    11456777653111     1112233322    456788999888877776643    79999999999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +++|+++.|+..     .|.   .+.+...|  .|+++++  |.+.+....|.++++++
T Consensus       214 lI~DEV~tG~gR-----tG~---~~a~~~~gv~PDiv~~g--K~l~gG~p~sav~~~~~  262 (339)
T PF00202_consen  214 LIADEVQTGFGR-----TGK---FFASEHYGVDPDIVTFG--KGLGGGLPISAVLGSEE  262 (339)
T ss_dssp             EEEEETTTTTTT-----TSS---SSGHHHHTSSSSEEEEE--GGGGTTSSEEEEEEEHH
T ss_pred             eecccccccccc-----cCC---ccceecccccCcccccc--cchhhhhhcccccccch
Confidence            999999988743     121   12222233  3999997  87655578888888864

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.13  E-value=1e-08  Score=104.60  Aligned_cols=169  Identities=18%  Similarity=0.175  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675          172 FEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI-  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi-  248 (438)
                      .+.++.+.++++..... ..    +  .|+++||||+..|++.+|.+    .|  +++|+.-..+ |....-+...-|. 
T Consensus        84 ~~~~la~~l~~~~p~~~~~~----~--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~s~~~~~  151 (421)
T PRK09792         84 SYVTLAEKINALAPVSGQAK----T--AFFTTGAEAVENAVKIARAH----TG--RPGVIAFSGGFHGRTYMTMALTGKV  151 (421)
T ss_pred             HHHHHHHHHHHhCCCCCCce----E--EEeCChHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCccHHHHhhcCCC
Confidence            34566667777764321 22    4  88999999999999999964    33  3567766554 4433222222111 


Q ss_pred             ------------EEEEeeCCC--CC---ccCHHHHHHhhc-----cCcEEEEEecCCCCCcccc-C---HHHHHHHHHHc
Q 013675          249 ------------KLWRVPVDK--EF---RADVKAIKKYIN-----RNTVLIVGSAPGFPHGIID-P---IQELGELALSH  302 (438)
Q Consensus       249 ------------~v~~v~~~~--~~---~~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~id-d---i~~I~~la~~~  302 (438)
                                  .+..+|...  ++   .-|++++++.+.     +++++|++....+++|... |   +++|.++|++|
T Consensus       152 ~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~  231 (421)
T PRK09792        152 APYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEH  231 (421)
T ss_pred             cccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence                        234444432  11   123578888875     3578899998888999764 5   89999999999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccCC--CCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~--~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      |+++++|++++|+..     .|.   .+....  ...|++++  .|.+.+...+|+++.+++
T Consensus       232 g~llI~DEv~tg~gr-----~G~---~~a~~~~~~~pDi~t~--gK~l~~G~pigav~~~~~  283 (421)
T PRK09792        232 GIVMIADEVQSGFAR-----TGK---LFAMDHYADKPDLMTM--AKSLAGGMPLSGVVGNAN  283 (421)
T ss_pred             CCEEEEeccccCCCC-----CCc---hhHHHhcCCCCcEEEe--ehhhcCCCceEEEEEcHH
Confidence            999999999988643     121   111111  12476555  588665567888777543

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.13  E-value=7.2e-09  Score=97.56  Aligned_cols=226  Identities=19%  Similarity=0.186  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCe-EEecCC--CcCcHH-------
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPE-MIIPVS--AHSAYD-------  240 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~-Viv~~~--~h~s~~-------  240 (438)
                      ....+..+.+.++||.+.      +  +-++.|.||+..|++.+|.|....+++++++ ++++..  .|....       
T Consensus       101 d~~~~f~~~vt~lf~~~k------v--lpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~  172 (427)
T KOG1402|consen  101 DVLGEFAEYVTKLFGYDK------V--LPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLST  172 (427)
T ss_pred             hhHHHHHHHHHHhcCcce------e--eecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecC
Confidence            344556678999999985      3  5677789999999999999988888887543 333322  221111       


Q ss_pred             --HHHhhcC----cEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEe
Q 013675          241 --KAAQYFN----IKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVD  309 (438)
Q Consensus       241 --~a~~~~G----i~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD  309 (438)
                        ...+-+|    ..+..||.+     |.++|+.++++ +.+++++...+-..|++-|    +++..++|.+|+++++.|
T Consensus       173 d~ds~~~fgp~~P~~~~~v~Y~-----d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~D  247 (427)
T KOG1402|consen  173 DPDSWDGFGPFLPGVVDKVPYG-----DAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIAD  247 (427)
T ss_pred             CcchhhccCCCCCCcceeeccC-----CHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEeh
Confidence              1112222    135666665     89999999975 6788888888888998855    899999999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      +++.|...     .|. .-..+......|++.+.  |.+. |-...+.++..++-...              ..+...||
T Consensus       248 EvQTGl~R-----TGk-~la~d~env~PDivilg--KalSGG~~Pvsavl~~~~im~~--------------~~pgeHgs  305 (427)
T KOG1402|consen  248 EVQTGLAR-----TGK-LLACDYENVRPDIVILG--KALSGGVYPVSAVLADDDIMLN--------------IKPGEHGS  305 (427)
T ss_pred             hhhhcccc-----cCc-EEEeehhhcCCCeEEEe--ccccCCeeeeEEEEecHHHHhc--------------cCCCcccc
Confidence            99987653     232 11233333345887765  5532 22445555555432221              12333555


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      ..|....++..++..+.-.--+++.++...+...|+++|.+++
T Consensus       306 TyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~  348 (427)
T KOG1402|consen  306 TYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQ  348 (427)
T ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5555444555555444433445677888888999999998764

>PRK06105 aminotransferase; Provisional

Probab=99.12  E-value=1e-08  Score=105.52  Aligned_cols=234  Identities=16%  Similarity=0.127  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      +...++.+.+++++..+.+.    +  .|+++||||+..|++.++.+... +|. .+.+|+.-..+ |.....+...-|.
T Consensus        92 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGseAve~AlKlar~~~~~-~g~t~r~~il~~~~~yHG~t~~a~s~t~~  164 (460)
T PRK06105         92 GPVIDLAEKLVAMAPVPMSK----V--FFTNSGSEANDTVVKLVWYYNNA-LGRPEKKKIISRQRGYHGVTIASASLTGL  164 (460)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEecCccCCcchhheeccCC
Confidence            34456677788887543333    4  89999999999999999865432 232 24567665444 5444333222121


Q ss_pred             ------------EEEEeeCCCCCc-------------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675          249 ------------KLWRVPVDKEFR-------------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       249 ------------~v~~v~~~~~~~-------------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                                  .+..+|.....+             ...+++++.+.    +++++|++.......|.+.+    ++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~l  244 (460)
T PRK06105        165 PNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKI  244 (460)
T ss_pred             cccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHH
Confidence                        223333221111             12467788773    35788888888777788776    8999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~  372 (438)
                      .++|++||+++++|+++.|+...     |.   -+.+...|  .|+++++  |.+.+. ...|.++.+++ +... +. .
T Consensus       245 r~lc~~~~~llI~DEv~tG~GRt-----G~---~f~~~~~~v~PDi~~~g--K~lggG~~P~~av~~~~~-i~~~-~~-~  311 (460)
T PRK06105        245 QAVLRKYDILLVADEVICGFGRT-----GN---MFGCETFGIKPDILVMS--KQLSSSYQPLSAVLMNEK-VYDP-IA-D  311 (460)
T ss_pred             HHHHHHcCCeEEEeccccCCCcC-----ch---hhhHHhcCCCCCeeeee--cccccCcccceEEEEcHH-HHHH-Hh-c
Confidence            99999999999999999776431     11   11122223  4877765  775443 24677777643 2211 10 0


Q ss_pred             cccCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          373 TEWSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       373 ~~~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .....+..   ...++-.+..  .++..++|+.+-++   +..++..++.++|.+.|+++
T Consensus       312 ~~~~~~~~---~h~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~v~~~g~~l~~~L~~l  365 (460)
T PRK06105        312 ESGKIGTF---GHGFTASGHPVAAAVALENLAIIEER---DLVGNAAERGARLQARLRAL  365 (460)
T ss_pred             ccccCccc---ccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHh
Confidence            00000000   0111222222  22344455555333   45677778888888888765

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.12  E-value=5.4e-09  Score=101.85  Aligned_cols=244  Identities=14%  Similarity=0.132  Sum_probs=158.2

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      ++|..+.|+.++...+..-....++.+... +-++  ++|+|.|.++..+++.+.+     +|   +.|++...++++-.
T Consensus        94 lQYg~s~G~peLl~fik~h~~~~ih~p~~~-~wdi--iit~G~t~~l~~~l~~~~N-----~g---d~vlie~~ty~~AL  162 (472)
T KOG0634|consen   94 LQYGQSSGIPELLLFIKDHNRPTIHAPPYK-NWDI--IITNGNTDGLFKVLRTLIN-----RG---DHVLIEEYTYPSAL  162 (472)
T ss_pred             hccccccCcHHHHHHHHHhccccccCCCCC-CceE--EEecCCchHHHHHHHHhhc-----CC---CceEEecccchHHH
Confidence            445667777777776666444455565432 1135  8999999999999999986     77   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc---------Cc-EEEEEecCCCCCccccCH---HHHHHHHHHcCCeEE
Q 013675          241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINR---------NT-VLIVGSAPGFPHGIIDPI---QELGELALSHGTCLH  307 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~---------~t-~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lh  307 (438)
                      ...+.+|++++.|++|++| ++++.|++.+..         ++ .+-.+..++||||...+.   ++|.+||++|++.++
T Consensus       163 ~s~~a~gv~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIV  241 (472)
T KOG0634|consen  163 QSMEALGVKIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIV  241 (472)
T ss_pred             HhccccCceEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEE
Confidence            9999999999988887654 899999998853         23 356677889999998876   589999999999999


Q ss_pred             EeccccchhhhhhhhcCC------CCCCCc--------------cCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc
Q 013675          308 VDLCLGGFVLPFAKKLGY------PIPPFD--------------FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH  367 (438)
Q Consensus       308 VD~a~gg~~~pf~~~~g~------~~p~~~--------------~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~  367 (438)
                      .|..|.-     ++--.+      ..|.++              ....|-.+=.-++.|...-+...|++...+ ..++.
T Consensus       242 eDdpYy~-----Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~-~~l~r  315 (472)
T KOG0634|consen  242 EDDPYYF-----LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNS-LFLKR  315 (472)
T ss_pred             ecCccce-----eeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCH-HHHHH
Confidence            9999852     221110      011111              111221122224568843335688865543 23222


Q ss_pred             chhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHH----HHHHHHHHHhhc-CCC
Q 013675          368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIM----EVSESIQKGLVL-FPM  432 (438)
Q Consensus       368 ~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~----~~a~~l~~~L~~-~~g  432 (438)
                      ....         ...+..| .+|-.-.-+++.++..|++|+.+.+.+++    ..+..+...|.+ +|.
T Consensus       316 il~~---------ae~~t~~-pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~  375 (472)
T KOG0634|consen  316 ILDL---------AEVATSG-PSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPK  375 (472)
T ss_pred             Hhhh---------cceeecC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            2110         0011111 22322335778888899988776666544    445555555554 443

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.11  E-value=9.3e-09  Score=102.52  Aligned_cols=160  Identities=22%  Similarity=0.218  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhc-----
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYF-----  246 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~-----  246 (438)
                      ..++.+.++++.+.+  .    +  .++++||+|+..|++.++.+    +|  +++|+....+|.... -+...-     
T Consensus        68 ~~~la~~l~~~~~~~--~----v--~~~~SGseA~e~Alklar~~----~g--r~~Ii~~~~syHG~t~~~ls~~~~~~~  133 (364)
T PRK04013         68 KEEMLEELSKWVNYE--Y----V--YMGNSGTEAVEAALKFARLY----TG--RKEIIAMTNAFHGRTMGALSATWKPKY  133 (364)
T ss_pred             HHHHHHHHHhhcCCC--E----E--EEeCchHHHHHHHHHHHHHH----hC--CCEEEEECCccccCchhhccCCCCccc
Confidence            344555677777653  2    4  89999999999999999865    23  367877766544432 222211     


Q ss_pred             --Cc-----EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCcccc-C---HHHHHHHHHHcCCeEEEeccccch
Q 013675          247 --NI-----KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIID-P---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       247 --Gi-----~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id-d---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                        +.     .+..+|.     -|++++++.+.+++++|++.......|.+. |   +++|.++|++||++++.|+++.|+
T Consensus       134 ~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~  208 (364)
T PRK04013        134 REDFEPLVPGFKHIPF-----NDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL  208 (364)
T ss_pred             ccCCCCCCCCcEEecC-----CCHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC
Confidence              11     1223332     278899999988999999998877666654 4   899999999999999999998875


Q ss_pred             hhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          316 VLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                       .     .|.   .+.....+  .|++++  .|.+.+....|.++.+++
T Consensus       209 -R-----tG~---~~a~~~~gv~PDiv~~--gK~lggG~P~~a~~~~~~  246 (364)
T PRK04013        209 -R-----TGK---FLAIEHYKVEPDIVTM--GKGIGNGVPVSLTLTNFD  246 (364)
T ss_pred             -C-----CCc---hhHHHhcCCCCCEEEe--cccccCCceeEEEEeccc
Confidence             3     221   12222333  388887  477555456777776643

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.10  E-value=1.2e-08  Score=104.45  Aligned_cols=223  Identities=17%  Similarity=0.123  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI-  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi-  248 (438)
                      +...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+    .|  +++|+.-..+ |.....+...-|. 
T Consensus        84 ~~~~~la~~L~~~~p~~~~~----v--~f~~sGsEAve~AlklAr~~----tg--r~~ii~~~~~yHG~t~~a~s~~~~~  151 (443)
T PRK08360         84 VEPLLLAEKLIEIAPGDNPK----V--SFGLSGSDANDGAIKFARAY----TK--RRKILSYLRSYYGSTYGAMSLTGLD  151 (443)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEcCCHHHHHHHHHHHHHHh----cC--CCeEEEEeCCcCCcCHHHHHhcCCC
Confidence            34556777788887544333    5  89999999999999999865    23  3566665544 4433333332221 


Q ss_pred             -----------EEEEeeCCCCCc------------cCHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675          249 -----------KLWRVPVDKEFR------------ADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       249 -----------~v~~v~~~~~~~------------~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                                 .+..+|......            -+++.+++.++     +++++|++....+++|.+.+    +++|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~  231 (443)
T PRK08360        152 FPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLK  231 (443)
T ss_pred             cccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHH
Confidence                       234444332111            23455666663     46889998887789998765    88999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE  374 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~  374 (438)
                      ++|++||+++++|++++|+..     .|.   .+.....+  .|++++  .|.+.++..+|+++.+++ +......    
T Consensus       232 ~l~~~~g~llI~DEv~~g~gr-----~G~---~~a~~~~~~~pDiitl--sK~l~~G~pigav~~~~~-i~~~~~~----  296 (443)
T PRK08360        232 KILDEHGILLVVDEVQSGLGR-----TGK---WFAIEHFGVEPDIITL--GKPLGGGLPISATIGRAE-IMDSLPP----  296 (443)
T ss_pred             HHHHHcCCEEEEeccccCCCc-----Ccc---chhhhhcCCCCCEEEe--cccccCCceeEEEEEcHH-HHhhhcC----
Confidence            999999999999999987643     111   01111112  377765  688554455788777643 3221100    


Q ss_pred             cCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                         .. ...+..+..  ...+++.++++.+..+   +..++..++.+++.+.|++
T Consensus       297 ---~~-~~~T~~~~p--~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~  342 (443)
T PRK08360        297 ---LA-HAFTLSGNP--VASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEE  342 (443)
T ss_pred             ---CC-CCCCCCcCH--HHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHH
Confidence               00 011111111  1134555566555333   3556666777777777654

>PLN00144 acetylornithine transaminase

Probab=99.10  E-value=1.8e-08  Score=101.51  Aligned_cols=169  Identities=20%  Similarity=0.126  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-C-------CCeEEecCCC-cCcHHHH
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-T-------RPEMIIPVSA-HSAYDKA  242 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~-------~~~Viv~~~~-h~s~~~a  242 (438)
                      ...++.+.++++.+.+  .    +  .++++||||+..|++.+|.+...+ |. .       +.+|+.-..+ |....-+
T Consensus        58 ~~~~la~~l~~~~~~~--~----v--~f~~sGseA~e~AlklAr~~~~~~-~~~~~~~~~~~r~~ii~~~~~yHG~t~~~  128 (382)
T PLN00144         58 PQVELAKRLVASSFAD--R----V--FFCNSGTEANEAAIKFARKYQRVR-APDKKDPAASSATEFVSFSNSFHGRTLGA  128 (382)
T ss_pred             HHHHHHHHHHhcCCCC--e----E--EEeCCcHHHHHHHHHHHHHHHhcc-CCCCccccccccceEEEECCCcccccHHH
Confidence            3445666677765432  2    5  899999999999999999764421 21 1       3567665555 4433333


Q ss_pred             HhhcCc------------EEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCcccc--C--HHHHHHHHHHcCCe
Q 013675          243 AQYFNI------------KLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIID--P--IQELGELALSHGTC  305 (438)
Q Consensus       243 ~~~~Gi------------~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~id--d--i~~I~~la~~~~i~  305 (438)
                      ....+-            .+..+|.     -|++++++.+.. ++++|++...++|.|.+.  +  +++|.++|++||++
T Consensus       129 ~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~l  203 (382)
T PLN00144        129 LALTSKEQYRTPFEPLMPGVTFVEY-----GNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGAL  203 (382)
T ss_pred             HhcCCCccccccCCCCCCCeEEeCC-----CCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            332221            1223332     278999998864 577888887778855543  3  88999999999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +++|++++|+..     .|. ....+......|++++  .|.+.+...+|+++.+++
T Consensus       204 lI~DEv~tg~gr-----~g~-~~~~~~~~~~PDi~t~--sK~l~~G~pig~v~~~~~  252 (382)
T PLN00144        204 LVFDEVQCGLGR-----TGY-LWAHEAYGVEPDIMTL--AKPLAGGLPIGAVLVTEK  252 (382)
T ss_pred             EEEechhhCCCc-----cch-HhhhhhcCCCCCEEEe--cccccCCcceEEEEEcHH
Confidence            999999987643     111 0011111112365554  588766667888887643

>PRK07678 aminotransferase; Validated

Probab=99.10  E-value=1.3e-08  Score=104.61  Aligned_cols=230  Identities=20%  Similarity=0.206  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI-  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi-  248 (438)
                      ...++.+.++++++.+. .    +  .|+++||||+..|++.+|.+... +|. .+.+|+.-..+ |-...-+....|. 
T Consensus        90 ~~~~lae~l~~~~~~~~-~----v--~f~~sGseA~e~AlklAr~~t~~-~g~~~r~~ii~~~~~yHG~t~~als~~~~~  161 (451)
T PRK07678         90 PAIKLAEKLNEWLGGEY-V----I--FFSNSGSEANETAFKIARQYHAQ-KGEPHRYKFISRYRAYHGNSMGALAATGQA  161 (451)
T ss_pred             HHHHHHHHHHHhCCCCC-E----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCccHHHhhcCCCc
Confidence            34567777888875532 2    4  89999999999999999986533 232 24567766554 4333333322111 


Q ss_pred             -----------EEEEeeCCCCCcc---------C---HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675          249 -----------KLWRVPVDKEFRA---------D---VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGE  297 (438)
Q Consensus       249 -----------~v~~v~~~~~~~~---------d---~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~  297 (438)
                                 .+..+|.....+.         |   ++.+++.+.    +++++|++.......|.+.|    ++++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~  241 (451)
T PRK07678        162 QRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKE  241 (451)
T ss_pred             ccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHH
Confidence                       2333443221111         1   234666674    46889998887777787765    899999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccc
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTE  374 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~  374 (438)
                      +|++||+.+++|+++.||..     .|.   .+.+...|  .|++++  .|.+.+. ..+|.++.+++ +... +.  ..
T Consensus       242 lc~~~g~llI~DEV~tGfGR-----tG~---~~~~~~~gv~PDivt~--gK~lggG~~Pi~av~~~~~-i~~~-~~--~~  307 (451)
T PRK07678        242 ICQKHGALLISDEVICGFGR-----TGK---AFGFMNYGVKPDIITM--AKGITSAYLPLSATAVKKE-IYEA-FK--GK  307 (451)
T ss_pred             HHHHcCCEEEEeehhhcCCc-----Cch---hHHHHhcCCCCCEEEe--ecccccCCcceeEEEEcHH-HHHH-Hh--cc
Confidence            99999999999999987743     111   11112234  388887  4765444 35788888754 2211 10  00


Q ss_pred             cCCCccCCCCccCCCCCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          375 WSGGLYVSPTVAGSRPGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      ...+.+   ...++-.+.  ..++..++|+.+-++   +..++..++.++|.+.|++
T Consensus       308 ~~~~~~---~h~~T~~gnp~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~  358 (451)
T PRK07678        308 GEYEHF---RHVNTFGGNPAACALALKNLEIMENE---NLIERSAQLGELLLEQLKE  358 (451)
T ss_pred             Cccccc---ccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH
Confidence            000000   011122222  133445555555333   3556666777777777653

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.09  E-value=2.1e-08  Score=102.77  Aligned_cols=235  Identities=20%  Similarity=0.192  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCc-HHHHHhhcC--
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSA-YDKAAQYFN--  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s-~~~a~~~~G--  247 (438)
                      ...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+...+ |. .+.+|+.-..+|.. ..-+...-|  
T Consensus        93 ~~~~la~~L~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~~~~~-g~~~r~~ii~~~~~yHG~t~gals~~~~~  165 (445)
T PRK09221         93 LAFELAERLAELAPGGLDH----V--FFTNSGSESVDTALKIALAYHRAR-GQGTRTRLIGRERGYHGVGFGGISVGGIV  165 (445)
T ss_pred             HHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHhc-CCCCCcEEEEECCCcCccchhhhccCCCh
Confidence            3445667788877432233    5  899999999999999999865432 21 24567665554333 222221111  


Q ss_pred             ----------cEEEEeeCCC---C--Cc--------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675          248 ----------IKLWRVPVDK---E--FR--------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       248 ----------i~v~~v~~~~---~--~~--------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                                ..+..+|...   .  +.        -..+++++.+.    +++.+|++.......|.+.|    +++|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~  245 (445)
T PRK09221        166 NNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLR  245 (445)
T ss_pred             hhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHH
Confidence                      1233344321   0  00        12457777774    45789999988888899888    99999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      ++|++||+++++|+++.|+..     .|.   .+.+...|+  |+++++  |.+.+. ...|.++.+++ +.+.. ...+
T Consensus       246 ~lc~~~g~llI~DEV~tG~GR-----tG~---~~~~~~~gv~PDi~~~g--K~l~gG~~Pi~av~~~~~-i~~~~-~~~~  313 (445)
T PRK09221        246 EICDKHGILLIFDEVITGFGR-----LGA---AFAAERFGVTPDIITFA--KGLTNGAIPMGAVIASDE-IYDAF-MQGP  313 (445)
T ss_pred             HHHHHcCCEEEEeehhhCCCc-----Cch---hhHHHhcCCCCCEEEec--cccccCcccceeeEEcHH-HHHhh-ccCc
Confidence            999999999999999877642     111   111222233  777765  554322 22566666643 32211 0000


Q ss_pred             ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..........+..| .+-+ .++..++|+.+.++   +..++..++.+++++.|+++
T Consensus       314 ~~~~~~~~~~T~~~-~pl~-~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l  365 (445)
T PRK09221        314 EYAIEFFHGYTYSA-HPVA-CAAGLATLDIYREE---DLFERAAELAPYFEDAVHSL  365 (445)
T ss_pred             ccccccccccCCCc-CHHH-HHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhh
Confidence            00000000111111 1111 33444566655443   45677888888888888765

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.09  E-value=2.1e-08  Score=102.75  Aligned_cols=236  Identities=20%  Similarity=0.188  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcH-HHHHhhcC-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAY-DKAAQYFN-  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~-~~a~~~~G-  247 (438)
                      +.+.++.+.+++++..+.+.    +  .++++||||+..|++.+|.+... +|. .+.+||.-..+|... .-+...-| 
T Consensus        89 ~~~~~la~~l~~~~p~~~~~----v--~f~~sGseA~e~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~gals~tg~  161 (442)
T PRK13360         89 PKAFELANRIAEIAPGGLNH----V--FFTNSGSESVDTALKIALAYHRA-RGEGSRTRLIGRERGYHGVGFGGISVGGI  161 (442)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEEcCCcCCccHhhhhccCC
Confidence            33456777788876422222    5  89999999999999999976432 222 245777666554332 22221111 


Q ss_pred             -----------cEEEEeeCCCC-----Cc--------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675          248 -----------IKLWRVPVDKE-----FR--------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       248 -----------i~v~~v~~~~~-----~~--------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                                 -.+..+|...+     +.        -+.+++++++.    +++.+|++.......|.+.|    +++|
T Consensus       162 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~l  241 (442)
T PRK13360        162 VPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRL  241 (442)
T ss_pred             hhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHH
Confidence                       12334443211     10        12567888885    45788888888888898888    9999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~  372 (438)
                      .++|++||+++++|+++.|+..     .|.   .+.+...|  .|++++  .|.+.+. ..+|.++.+++ +.+. +...
T Consensus       242 r~lc~~~g~llI~DEv~tG~Gr-----tG~---~~a~~~~gv~PDivt~--gK~l~gG~~P~gav~~~~~-i~~~-~~~~  309 (442)
T PRK13360        242 REICDKHGILLIFDEVITGFGR-----LGA---PFAAQYFGVTPDLLTC--AKGLTNGAIPMGAVFVSSE-IHDA-FMQG  309 (442)
T ss_pred             HHHHHHcCCEEEEechhhCCCC-----Ccc---chhhhhcCCCCceeee--eeccccCccceEEEEEcHH-HHHH-hhcC
Confidence            9999999999999999977643     121   12122233  377765  4875433 23666677643 3211 1100


Q ss_pred             cccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       373 ~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +..........+..| .+ ...++..++|+.+.++   +..++..++.+++.+.|+++
T Consensus       310 ~~~~~~~~~~~T~~g-~p-l~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l  362 (442)
T PRK13360        310 PEAGIEFFHGYTYSG-HP-LACAAALATLDLYERE---GLLTRAARLAPYWEDALHSL  362 (442)
T ss_pred             CccccccccCCCCCC-CH-HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHh
Confidence            000000001112211 11 1234555666665444   35567777777888877654

>PRK07481 hypothetical protein; Provisional

Probab=99.09  E-value=3.1e-08  Score=101.75  Aligned_cols=235  Identities=20%  Similarity=0.166  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcH-HHHHhhcC-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAY-DKAAQYFN-  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~-~~a~~~~G-  247 (438)
                      +.+.++.+.++++++.+.-+   .+  .++++||||+..|++.+|.+... .|. .+.+|+.-..+|... .-+...-| 
T Consensus        86 ~~~~~lae~L~~~~~~~~~~---~v--~f~~sGsEAve~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~ga~s~~~~  159 (449)
T PRK07481         86 PRAIELSYELIDMFAPEGMR---RV--FFSSGGSDSVETALKLARQYWKV-RGQPERTKFISLKQGYHGTHFGGASVNGN  159 (449)
T ss_pred             HHHHHHHHHHHHhcCCCCCC---EE--EEcCchHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCcchhhhccCCC
Confidence            34456677788877422111   24  89999999999999999976532 232 245677666554332 22222111 


Q ss_pred             -----------cEEEEeeCCCC----Cc-cCHHH--------HHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675          248 -----------IKLWRVPVDKE----FR-ADVKA--------IKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       248 -----------i~v~~v~~~~~----~~-~d~~~--------Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                                 -.+..++.+..    +. -|+++        +|+.|.    +++.+|++.......|.+.|    ++++
T Consensus       160 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~l  239 (449)
T PRK07481        160 TVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLV  239 (449)
T ss_pred             cccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHH
Confidence                       01233332211    11 13333        455553    45889999988877787765    8999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~  372 (438)
                      .++|++||+.++.|+++.||..     .|.   .+.+...|  .|+++++  |.+.++. .+|.++.+++ +... +...
T Consensus       240 r~lc~~~g~llI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~-i~~~-~~~~  307 (449)
T PRK07481        240 REVCDRHGILLIADEVVTGFGR-----TGS---WFGSRGWGVKPDIMCLA--KGITSGYVPLGATMVNAR-IADA-FEAN  307 (449)
T ss_pred             HHHHHHcCCEEEEeehhhCcCc-----Cch---hhHhhhcCCCCCEEEEe--ecccCCCcCceEEEEcHH-HHHH-Hhcc
Confidence            9999999999999999988743     111   11122233  3888874  7654442 4677787754 2211 1000


Q ss_pred             cccCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          373 TEWSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       373 ~~~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                       ....+..   ...++-.+..  .++..++|+.+.++   +..++..++.++|.+.|+++
T Consensus       308 -~~~~~~~---~h~~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l  360 (449)
T PRK07481        308 -ADFGGAI---MHGYTYSGHPVACAAALATLDIVVRE---DLPANAAKRGAYLLEGLQPL  360 (449)
T ss_pred             -Ccccccc---ccCCCCCCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH
Confidence             0000000   0111222222  23444555544333   45566666777777777653

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.09  E-value=1.9e-08  Score=102.79  Aligned_cols=216  Identities=20%  Similarity=0.283  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc--
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI--  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi--  248 (438)
                      .+.++.+.+++++.. .+.    +  .|+++||||+..|++.+|.+    .|  +.+|+.-..+ |....-+....|-  
T Consensus        94 ~~~~la~~l~~~~p~-~~~----v--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~~~~~~~~  160 (428)
T PRK12389         94 LEIEFAKMLKEAIPS-LEK----V--RFVNSGTEAVMTTIRVARAY----TG--RTKIIKFAGCYHGHSDLVLVAAGSGP  160 (428)
T ss_pred             HHHHHHHHHHHhCCC-CcE----E--EEeCCHHHHHHHHHHHHHHh----hC--CCEEEEECCCcCCChHHHHHhcCCcc
Confidence            345667777777642 222    5  89999999999999999975    23  3567665554 4433333332221  


Q ss_pred             -----------------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCC
Q 013675          249 -----------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGT  304 (438)
Q Consensus       249 -----------------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i  304 (438)
                                       .+..+|.     -|++++++.++   +++.+|++.......|.+.|    +++|.++|++||+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~  235 (428)
T PRK12389        161 STLGTPDSAGVPKSIAQEVITVPF-----NDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGA  235 (428)
T ss_pred             cccCCCCCCCCCCcccCceEEcCC-----CCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence                             1112221     27899998885   35788888888888898888    9999999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCC
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVS  382 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~  382 (438)
                      .+++|+++.||-..+.         +.....|  .|++++  .|.+.+....|.++.++ ++... +.  .  .+..+  
T Consensus       236 llI~DEV~tG~Rt~~~---------~a~~~~gv~PDivt~--gK~lggG~Pi~av~~~~-~i~~~-~~--~--~~~~~--  296 (428)
T PRK12389        236 LVIYDEVITAFRFMYG---------GAQDLLGVEPDLTAL--GKIIGGGLPIGAYGGRK-DIMEQ-VA--P--LGPAY--  296 (428)
T ss_pred             EEEEEccccccccCcc---------hhhHHhCCCCCeeee--chhhcCCCceeEEeEHH-HHHhh-hc--c--CCCcc--
Confidence            9999999988721110         0011122  377665  47765555677776654 33221 10  0  01001  


Q ss_pred             CCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          383 PTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       383 ~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                        ..++-.+..  .++..++|+.+.++   +..++..++.++|++.|++
T Consensus       297 --~~~T~~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~  340 (428)
T PRK12389        297 --QAGTMAGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILE  340 (428)
T ss_pred             --cccCCccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHH
Confidence              111212221  33455566655433   3566777778888887765

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.08  E-value=2.3e-08  Score=103.04  Aligned_cols=233  Identities=16%  Similarity=0.142  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCc-CcHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAH-SAYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h-~s~~~a~~~~Gi  248 (438)
                      +...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+... +|. .+.+|+.-..+| -...-+...-|.
T Consensus        90 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGsEAve~AlKlAr~~~~~-~g~t~r~~ii~~~~~yHG~t~ga~s~~~~  162 (466)
T PRK07030         90 EPVIELSERLVKITPPGLSR----C--FYADNGSSAIEVALKMSFHYWRN-RGKPRKKRFVTLTNSYHGETLAAMSVGDV  162 (466)
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHH-hCCCCCcEEEEECCCcCcccHHHHhccCC
Confidence            44556777788876422222    5  89999999999999999976432 232 245676665554 333333322221


Q ss_pred             ------------EEEEeeCCCCC------------ccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----HHHHH
Q 013675          249 ------------KLWRVPVDKEF------------RADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELG  296 (438)
Q Consensus       249 ------------~v~~v~~~~~~------------~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i~~I~  296 (438)
                                  .+..+|.....            .-+++++++.++   +++.+|++.. .....|.+.+    +++|.
T Consensus       163 ~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr  242 (466)
T PRK07030        163 ALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLR  242 (466)
T ss_pred             ccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHH
Confidence                        13334432111            113566788885   4577888887 4666677654    88999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecccccccchhccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      ++|++||+.+++|+++.||..     .|.   -+.....|+  |+++++  |.+.+.. ..|.++.+++ +.+. +.  .
T Consensus       243 ~lc~~~g~llI~DEV~TGfGR-----tG~---~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~e-i~~~-~~--~  308 (466)
T PRK07030        243 EACDRYGVHLIHDEIAVGFGR-----TGT---MFACEQAGIRPDFLCLS--KALTGGYLPLAAVLTTDT-VYQA-FY--D  308 (466)
T ss_pred             HHHHHcCCEEEEeehhhCcCc-----ccc---chHHHhcCCCCCEEeee--hhccCCcccceEEEecHH-HHHH-Hh--c
Confidence            999999999999999987743     111   122222343  888884  7655552 5777777654 2211 10  0


Q ss_pred             ccCCCccCCCCccC-CCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          374 EWSGGLYVSPTVAG-SRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       374 ~~~g~~~~~~~~~g-sr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ....   ......+ +-.+..  .++..++|+.+-++   +..++..++.++|.+.|+++
T Consensus       309 ~~~~---~~~~~h~~T~~gnpla~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l  362 (466)
T PRK07030        309 DYPT---LRAFLHSHSYTGNPLACAAALATLDIFEQD---NVIENNRALARRMAEATAHL  362 (466)
T ss_pred             cccc---ccccccCCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence            0000   0001111 112221  23444455555333   45677777888888887664

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.08  E-value=1.7e-08  Score=99.86  Aligned_cols=219  Identities=23%  Similarity=0.318  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhc-
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYF-  246 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~-  246 (438)
                      ..+.|-++.+.+++++..-+-     +  -|+++||||++.|++.+|-+.    |  |++|+.-+.+ |...+...--. 
T Consensus        91 Pte~Ei~~Aell~~~~p~~e~-----v--rfvnSGTEAtmsAiRlARa~T----g--R~kIikF~G~YHG~~D~~lv~ag  157 (432)
T COG0001          91 PTELEVELAELLIERVPSIEK-----V--RFVNSGTEATMSAIRLARAYT----G--RDKIIKFEGCYHGHSDSLLVKAG  157 (432)
T ss_pred             CCHHHHHHHHHHHHhcCcccE-----E--EEecchhHHHHHHHHHHHHhh----C--CCeEEEEcCCCCCCccHHHhhcC
Confidence            346788888999999877322     5  899999999999999998652    2  4677766555 44444333322 


Q ss_pred             ------------Cc------EEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHH
Q 013675          247 ------------NI------KLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALS  301 (438)
Q Consensus       247 ------------Gi------~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~  301 (438)
                                  |+      .++.+|.+     |++++++++++   +.++|++.......|.+.|    +++|.++|++
T Consensus       158 sg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e  232 (432)
T COG0001         158 SGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEE  232 (432)
T ss_pred             cCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHH
Confidence                        22      34555555     89999999975   5788988888888999877    7899999999


Q ss_pred             cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc
Q 013675          302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL  379 (438)
Q Consensus       302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~  379 (438)
                      +|+.++.|++..||-+++-   |      .....|+  |..++  -|...++..+|++.-|. ++.+..-.     .|..
T Consensus       233 ~G~lLI~DEViTGFR~~~g---G------aq~~~gi~PDlttl--GKiIGGGlP~ga~gGr~-eiM~~~~p-----~g~v  295 (432)
T COG0001         233 HGALLIFDEVITGFRVALG---G------AQGYYGVEPDLTTL--GKIIGGGLPIGAFGGRA-EIMEQLAP-----LGPV  295 (432)
T ss_pred             cCcEEEEecchhhcccCCc---c------cccccCcCcchhhh--hhhhcCCcceeeeccHH-HHHhhhCC-----CCCc
Confidence            9999999999988776421   1      1122333  66655  48877888888866653 33321111     1222


Q ss_pred             cCCCCccCCCCCch--HHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhc
Q 013675          380 YVSPTVAGSRPGGL--IAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       380 ~~~~~~~gsr~~~~--ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      |.    .|+-+|..  +++-.++++.+-+ ++   ..++..+++++|++.|++
T Consensus       296 yq----aGT~sgnplamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl~~  341 (432)
T COG0001         296 YQ----AGTLSGNPLAMAAGLATLEELMTEEG---VYERLDALGERLAEGLRA  341 (432)
T ss_pred             cc----cCCCCCcHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHH
Confidence            22    33444432  4456666666543 22   345555566666666554

>PRK07036 hypothetical protein; Provisional

Probab=99.07  E-value=3.7e-08  Score=101.53  Aligned_cols=233  Identities=19%  Similarity=0.167  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      +.+.++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+... +|. .+.+|+.-..+ |-...-+...-|-
T Consensus        95 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~~~~-~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~  167 (466)
T PRK07036         95 APAAELAAKLAELAPGDLNH----V--FLTTGGSTAVDSALRFVHYYFNV-RGRPAKKHIITRGDAYHGSTYLTASLTGK  167 (466)
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEeCCchHHHHHHHHHHHHHHHh-cCCCCccEEEEEcCccCCccHhhhcccCC
Confidence            34556677777776433232    5  89999999999999999875432 232 24567665554 4333222221111


Q ss_pred             ------------EEEEeeCCCC----Ccc--------CHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675          249 ------------KLWRVPVDKE----FRA--------DVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       249 ------------~v~~v~~~~~----~~~--------d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                                  .+..+|....    ..+        .++.+++.+.    +++.+|++.......|.+.|    +++|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr  247 (466)
T PRK07036        168 AADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMR  247 (466)
T ss_pred             CcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHH
Confidence                        1333443211    011        1345666663    45789999988877888876    89999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccC-CCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS-VQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~-~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~  372 (438)
                      ++|++||+.+++|+++.||..     .|.   .+... ..|  .|+++++  |.+.++. .+|.++.+++ +.+. +.. 
T Consensus       248 ~lc~~~g~llI~DEV~tGfGR-----tG~---~~~~~~~~gv~PDivt~g--K~l~gG~~Pi~av~~~~~-i~~~-~~~-  314 (466)
T PRK07036        248 EICRRYDILYISDEVVTGFGR-----LGH---FFASEAVFGIQPDIITFA--KGLTSGYQPLGAVIISER-LLDV-ISG-  314 (466)
T ss_pred             HHHHHcCCEEEEeechhCCCc-----Cch---hhhhhhhcCCCCCEEEEc--cccccCccccEEEEEcHH-HHHH-Hhc-
Confidence            999999999999999987743     110   11111 123  3888774  7754442 4777777644 3221 100 


Q ss_pred             cccCCCccCCCCccC-CCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          373 TEWSGGLYVSPTVAG-SRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       373 ~~~~g~~~~~~~~~g-sr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ....+..+    ..| +-.+..  .++..++|+.+.+   .+..++..++.++|.+.|+++
T Consensus       315 ~~~~~~~~----~~~~T~~gnpl~~aaa~a~Le~i~~---~~l~~~~~~~g~~l~~~L~~l  368 (466)
T PRK07036        315 PNAKGNVF----THGFTYSGHPVACAAALKNIEIMER---EGLCEHVREVGPYFEERLASL  368 (466)
T ss_pred             ccCcCccc----ccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHh
Confidence            00001111    111 111211  2333444444432   356677778888888887654

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.07  E-value=9e-09  Score=105.16  Aligned_cols=160  Identities=19%  Similarity=0.197  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh-c--Cc-
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY-F--NI-  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~-~--Gi-  248 (438)
                      ..++.+.+++.+... +.    +  .+|+|||+|+..|++.+|.+.    |  +++|+....+|......+.. .  |. 
T Consensus        90 ~~~lae~l~~~~~~~-~~----v--~~~~sGseA~e~Alk~ar~~~----g--r~~ii~~~~~yhG~~~~~~~~~~~~~~  156 (423)
T TIGR00713        90 EILLAKEIISRVPSV-EM----V--RFVNSGTEATMSAVRLARGYT----G--RDKIIKFEGCYHGHHDALLVKAGSGAA  156 (423)
T ss_pred             HHHHHHHHHHhCCcc-cE----E--EEeCCHHHHHHHHHHHHHHhh----C--CCEEEEEcCCCCCChhhhhccccCccc
Confidence            345566677766543 23    5  899999999999999998752    2  36888887776554322221 0  10 


Q ss_pred             ----------------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEe-cCCCCCccccC----HHHHHHHHHHcCC
Q 013675          249 ----------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGS-APGFPHGIIDP----IQELGELALSHGT  304 (438)
Q Consensus       249 ----------------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~-~~~~~tG~idd----i~~I~~la~~~~i  304 (438)
                                      ....+|.     -|+++++++++   +++++|++. .+++ +|.+.|    +++|.++|++||+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~  230 (423)
T TIGR00713       157 TLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGS  230 (423)
T ss_pred             ccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCC
Confidence                            0111221     28999999997   567888886 5555 798866    7899999999999


Q ss_pred             eEEEeccccchhh--hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          305 CLHVDLCLGGFVL--PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       305 ~lhVD~a~gg~~~--pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      ++++|+++.|+..  .+...      .++.   ..|.+  +..|.+.+....|+++.+++
T Consensus       231 llI~DEv~~g~r~g~~~~~~------~~~~---~pDi~--t~sK~l~~G~pig~v~~~~~  279 (423)
T TIGR00713       231 LLIFDEVMTGFRVALGGAQE------YFGV---EPDLT--TLGKIIGGGLPVGAFGGRRE  279 (423)
T ss_pred             EEEEEccccccccCcchhHH------HhCC---Ccchh--hhhhhhcCCCceeeeeEHHH
Confidence            9999999987732  11110      0111   12544  35688554455788777643

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.06  E-value=5.5e-08  Score=99.68  Aligned_cols=221  Identities=24%  Similarity=0.188  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      +.+.++.+.+++++..+ .+.    +  .|+++||||+..|++.+|.+    .|  +++|+.-..+ |....-+...-|-
T Consensus        97 ~~~~~lAe~L~~~~p~~~~~~----v--~f~~SGsEA~e~AlklAr~~----tg--r~~Ii~~~~~yHG~t~~~ls~t~~  164 (441)
T PRK05769         97 EPAVELAERLVEIAPGGFEKK----V--FFTNSGTESNEAAIKIARYH----TG--RKYIIAFLGAFHGRTYGSLSLTAS  164 (441)
T ss_pred             HHHHHHHHHHHHhCCCCCCCE----E--EECCchHHHHHHHHHHHHHH----hC--CCeEEEECCCcCCccHHHHHhcCC
Confidence            34566777888887432 122    5  89999999999999999965    23  3567765554 4433333322111


Q ss_pred             -------------EEEEeeCCCCCc-------------cCHHHHHH-hhc-----cCcEEEEEecCCCCCccccC----H
Q 013675          249 -------------KLWRVPVDKEFR-------------ADVKAIKK-YIN-----RNTVLIVGSAPGFPHGIIDP----I  292 (438)
Q Consensus       249 -------------~v~~v~~~~~~~-------------~d~~~Le~-~I~-----~~t~~vv~~~~~~~tG~idd----i  292 (438)
                                   .+..+|.....+             -+++.+++ .++     +++.+|++.......|.+.|    +
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l  244 (441)
T PRK05769        165 KPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFF  244 (441)
T ss_pred             CcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHH
Confidence                         234444422111             12344666 322     35778888888777888888    9


Q ss_pred             HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchh
Q 013675          293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV  370 (438)
Q Consensus       293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~  370 (438)
                      ++|.++|++||+.+++|++++|+..     .|.   .+.+...|+  |.++++  |.+.++...|+++.+++ +...  .
T Consensus       245 ~~l~~l~~~~g~lli~DEv~tG~gr-----~G~---~~a~~~~gv~pDivt~~--K~l~~G~p~gav~~~~~-i~~~--~  311 (441)
T PRK05769        245 KELRKLADKYGILLIDDEVQTGMGR-----TGK---MFAIEHFGVEPDIITLA--KAIAGGLPLGAVIGRAE-LMFL--P  311 (441)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCc-----ccc---eehhhccCCCCCEEEEc--ccccCCcccEEEEEehh-hhhc--C
Confidence            9999999999999999999987543     121   112222233  888764  76555566788777654 2211  0


Q ss_pred             cccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          371 AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       371 ~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                        ....     ..+..| .+ ...++..++|+.+.+    +..++..++.++|++.|++
T Consensus       312 --~~~~-----~~T~~g-~p-~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~  357 (441)
T PRK05769        312 --PGSH-----ANTFGG-NP-VAAAAALATLEELEE----GLLENAQKLGEYLRKELKE  357 (441)
T ss_pred             --CCCC-----CCCCCc-CH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence              0011     112222 11 123345555655532    5667777788888887765

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.06  E-value=1.6e-08  Score=104.10  Aligned_cols=220  Identities=18%  Similarity=0.207  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhc---
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYF---  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~---  246 (438)
                      +.+.++.+.+++.+.. .+.    +  .|+++||||+..|++.+|.+    .|  +++|+.-..+|..+. ......   
T Consensus       139 ~~~~~lAe~l~~~~p~-~~~----v--~f~~SGsEA~e~AlklAR~~----tg--r~~Ii~~~g~YHG~~~~~~~~~~~~  205 (474)
T PLN02482        139 LLENVLAEMVIDAVPS-VEM----V--RFVNSGTEACMGVLRLARAY----TG--REKIIKFEGCYHGHADSFLVKAGSG  205 (474)
T ss_pred             HHHHHHHHHHHHhCCC-CCE----E--EEeCChHHHHHHHHHHHHHh----cC--CCEEEEECCccCCCcchhhhhcCCC
Confidence            4566778888888743 222    5  89999999999999999975    33  356776555443322 111100   


Q ss_pred             ----------Cc------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675          247 ----------NI------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHG  303 (438)
Q Consensus       247 ----------Gi------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~  303 (438)
                                |+      .+..+|.     -|++++++.++   +++.+|++.......|.+.|    +++|.++|++||
T Consensus       206 ~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g  280 (474)
T PLN02482        206 VATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENG  280 (474)
T ss_pred             ccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence                      11      1111221     17899999886   35778888888777888766    668999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV  381 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~  381 (438)
                      +.+++|+++.|+-..   . +     +.....|  .|.+++  .|.+.+...+|.++.++ ++.+.. .  +  .+..+.
T Consensus       281 ~lLI~DEV~tGfR~g---~-~-----ga~~~~gv~PDi~t~--gK~lggG~Pigav~g~~-ei~~~~-~--~--~~~~~~  343 (474)
T PLN02482        281 ALLVFDEVMTGFRIA---Y-G-----GAQEYFGITPDLTTL--GKVIGGGLPVGAYGGRR-EIMEMV-A--P--AGPMYQ  343 (474)
T ss_pred             CEEEEeccccCeecC---c-c-----hHhHHhCCCCCEEEe--cchhhCCCceEEEEEcH-HHHHhh-c--c--CCCccc
Confidence            999999998776321   0 0     1111122  477666  58865556678876654 332211 0  0  011111


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..+..|..  ...++..++|+.+..   .+..++..++.++|++.|+++
T Consensus       344 ~~T~~gnp--l~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l  387 (474)
T PLN02482        344 AGTLSGNP--LAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEA  387 (474)
T ss_pred             ccCcchhH--HHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHH
Confidence            11111111  113345556665533   346667777788888777653

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.05  E-value=4.4e-08  Score=100.07  Aligned_cols=175  Identities=17%  Similarity=0.151  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhc--
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYF--  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~--  246 (438)
                      +...++.+.+++++..+... ...+  .| +++||||+..|++.+|.+    .|  +++|+.-..+ |-...-+...-  
T Consensus        82 ~~~~~lae~l~~~~~~~~~~-~~~~--~f~~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~ls~~~~  152 (425)
T PRK09264         82 TAKREFLETFEETILKPRGL-DYKV--QFTGPTGTNAVEAALKLARKV----TG--RTNIVAFTNGFHGMTLGSLAVTGN  152 (425)
T ss_pred             HHHHHHHHHHHHhhcCCcCC-CceE--EEeCCCHHHHHHHHHHHHHHh----cC--CCeEEEECCccCCccHHHHHhcCC
Confidence            34455666777765332110 0012  45 589999999999999975    33  3567765554 43332222221  


Q ss_pred             -------Cc---EEEEeeCCCCC---ccCHHHHHHhhcc------CcEEEEEecCCCCCcccc----CHHHHHHHHHHcC
Q 013675          247 -------NI---KLWRVPVDKEF---RADVKAIKKYINR------NTVLIVGSAPGFPHGIID----PIQELGELALSHG  303 (438)
Q Consensus       247 -------Gi---~v~~v~~~~~~---~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~id----di~~I~~la~~~~  303 (438)
                             |.   .+..+|.....   .-|++++++.+++      ++++|++.......|.+.    .+++|.++|++||
T Consensus       153 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g  232 (425)
T PRK09264        153 SHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHD  232 (425)
T ss_pred             cccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence                   11   34556553211   1367888988852      467888888877777653    4899999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCC-CCCcEEEEEecc
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLA-PKGTSVVLYRNR  362 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~-p~g~g~l~~r~~  362 (438)
                      +++++|++++|+..     .|... .++......|+++++  |.+.+ ...+|+++.+++
T Consensus       233 ~llI~DEV~tG~Gr-----tG~~~-~~~~~~v~PDi~t~~--K~l~~~G~pigav~~~~~  284 (425)
T PRK09264        233 ILLIVDDIQAGCGR-----TGTFF-SFERAGITPDIVTLS--KSISGYGLPMALVLIKPE  284 (425)
T ss_pred             cEEEEechhhCCcc-----ccHHH-HHhhcCCCCCEEEec--cccCCCccceEEEEEchh
Confidence            99999999987642     11000 011111124777775  87433 334688888754

>PRK06062 hypothetical protein; Provisional

Probab=99.04  E-value=1.9e-08  Score=103.41  Aligned_cols=169  Identities=20%  Similarity=0.187  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI-  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi-  248 (438)
                      +...++.+.++++...+.+.    +  .|+++||||+..|++.+|.+    .|  +++|+....+ |-...-+...-|. 
T Consensus        95 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGsEAve~AlklAr~~----tg--r~~ii~~~~~yHG~t~~als~~~~~  162 (451)
T PRK06062         95 DARSEAARLIAERAPGDLSK----V--FFTNGGADANEHAVRMARLH----TG--RPKVLSAYRSYHGGTGSAINLTGDP  162 (451)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEcCChHHHHHHHHHHHHHh----hC--CceEEEEeCCCCCCCHHHHhhcCCc
Confidence            34456667787776432233    5  89999999999999999975    23  3567766554 4443333332221 


Q ss_pred             ----------EEEEeeCCCCCc------cC-------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675          249 ----------KLWRVPVDKEFR------AD-------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGE  297 (438)
Q Consensus       249 ----------~v~~v~~~~~~~------~d-------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~  297 (438)
                                .+..++....++      -|       ++++++.++    +++.+|++.......|.+.|    +++|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~  242 (451)
T PRK06062        163 RRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRE  242 (451)
T ss_pred             ccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHH
Confidence                      122333221111      12       678888885    35788888888877888887    999999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEec
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRN  361 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~  361 (438)
                      +|++||+.+++|++++||..     .|.   .+.....|  .|++++  .|.+.++. .+|.++.++
T Consensus       243 lc~~~g~lLI~DEV~tGfGR-----tG~---~~a~~~~gv~PDi~t~--gK~lggG~~Pigav~~~~  299 (451)
T PRK06062        243 LCDRHGIVLIADEVMAGFGR-----TGK---WFAIEHFGVVPDLITF--AKGVNSGYVPLGGVAISE  299 (451)
T ss_pred             HHHHcCCEEEeeccccCCCc-----CcH---HHHHHhcCCCCCeeee--chhhhcCCcCcEEEEEcH
Confidence            99999999999999988643     111   11111223  487776  48755543 467777775

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.04  E-value=1e-08  Score=102.52  Aligned_cols=253  Identities=19%  Similarity=0.157  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR  222 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~  222 (438)
                      +.+.+.+-+......++......| .    .++.++++++.. .+-+.    +  .+++|||+|+..|++.++.+... +
T Consensus        65 i~~Ai~~Q~~~l~~~~~~~~t~~P-a----~~LA~~L~~~aP~~~l~~----v--Ff~~sGSeAvEtAlKma~qY~~~-~  132 (449)
T COG0161          65 IAEAIKKQLDKLPHVMFGGFTHEP-A----IELAEKLAELAPEGGLDH----V--FFTDSGSEAVETALKMALQYWRA-R  132 (449)
T ss_pred             HHHHHHHHHHhCCchhhcccCCch-H----HHHHHHHHHhCCCCCccE----E--EEeCCchHHHHHHHHHHHHHHHh-c
Confidence            444444444444444444444444 2    245567888876 32333    5  89999999999999999988765 4


Q ss_pred             CCC-CCeEEecCCC-cCcHHHHHhhcCc-------------EEEEeeCCC------CCc------cCHHHHHHhhcc---
Q 013675          223 GIT-RPEMIIPVSA-HSAYDKAAQYFNI-------------KLWRVPVDK------EFR------ADVKAIKKYINR---  272 (438)
Q Consensus       223 G~~-~~~Viv~~~~-h~s~~~a~~~~Gi-------------~v~~v~~~~------~~~------~d~~~Le~~I~~---  272 (438)
                      |-+ +.++|.-... |-+..-+...-|.             .+..+|...      ++.      -..++||+.|.+   
T Consensus       133 G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~  212 (449)
T COG0161         133 GQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGP  212 (449)
T ss_pred             CCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCc
Confidence            443 3446554444 4443333333331             344454421      111      236778888864   


Q ss_pred             -CcEEEEEecCCCC-CccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCC
Q 013675          273 -NTVLIVGSAPGFP-HGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDV  344 (438)
Q Consensus       273 -~t~~vv~~~~~~~-tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~  344 (438)
                       +.+++++....-. .|.+.|    ++++.++|++|||.++.|++-.||..     .|.   .|.....|+  |+++++ 
T Consensus       213 ~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGR-----TG~---~FA~e~~gi~PDi~~~a-  283 (449)
T COG0161         213 ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGR-----TGK---MFACEHAGIVPDILCLA-  283 (449)
T ss_pred             ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCc-----Cch---hhhhhhcCCCCCeeeec-
Confidence             3567777666555 676655    89999999999999999999888764     232   344444555  898887 


Q ss_pred             CCCC---CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 013675          345 HKYG---LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSE  421 (438)
Q Consensus       345 hK~~---~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~  421 (438)
                       |.+   +.|  .|.++++++-.. .- .     .+.  ......|....+...+|.+++..+..-.-+...++..++..
T Consensus       284 -KGLT~GY~P--l~a~l~~~~I~~-~~-~-----~~~--~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~  351 (449)
T COG0161         284 -KGLTGGYLP--LSAVLTSDRIYE-AF-S-----DGD--AGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGA  351 (449)
T ss_pred             -ccccccchh--hHhHhhhHHHHH-HH-h-----ccc--CCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence             553   444  455566654221 10 0     110  11112232222233467777766654444566777778888


Q ss_pred             HHHHHhhc
Q 013675          422 SIQKGLVL  429 (438)
Q Consensus       422 ~l~~~L~~  429 (438)
                      ++.++|++
T Consensus       352 ~l~~~L~~  359 (449)
T COG0161         352 YLQAGLQA  359 (449)
T ss_pred             HHHHHHHH
Confidence            88888886

>PRK07483 hypothetical protein; Provisional

Probab=99.04  E-value=4.1e-08  Score=100.66  Aligned_cols=174  Identities=20%  Similarity=0.161  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC-CCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-ITRPEMIIPVSA-HSAYDKAAQYFNI-  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G-~~~~~Viv~~~~-h~s~~~a~~~~Gi-  248 (438)
                      ...++.+.+++++..+.+.    +  .++++||||+..|++.+|.+... +| ..+.+|+.-..+ |-...-+...-|- 
T Consensus        74 ~~~~lae~L~~~~p~~~~~----v--~f~~sGsEAve~AlklAr~~~~~-~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~  146 (443)
T PRK07483         74 PAEALADRLVAAAPAGLEH----V--YFVSGGSEAVEAALKLARQYFVE-IGQPQRRHFIARRQSYHGNTLGALAIGGNA  146 (443)
T ss_pred             HHHHHHHHHHHhCCCCCCE----E--EEcCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCcCHHHhhhcCCc
Confidence            3456667777776422223    5  89999999999999999986543 23 234667765544 4433322222110 


Q ss_pred             -----------EEEEeeCCCCCcc-------------CHHHHHHhhc----cCcEEEEEecCCC-CCccccC----HHHH
Q 013675          249 -----------KLWRVPVDKEFRA-------------DVKAIKKYIN----RNTVLIVGSAPGF-PHGIIDP----IQEL  295 (438)
Q Consensus       249 -----------~v~~v~~~~~~~~-------------d~~~Le~~I~----~~t~~vv~~~~~~-~tG~idd----i~~I  295 (438)
                                 .+..+|....++-             .++++++++.    +++.+|++..... .-|.+.|    +++|
T Consensus       147 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~l  226 (443)
T PRK07483        147 WRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRI  226 (443)
T ss_pred             ccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHH
Confidence                       1233432211110             1356777664    4577888887664 2466654    8999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNR  362 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~  362 (438)
                      .++|++||+.+++|+++.||..     .|.   -+.+...|  .|+++++  |.+.+.. ..|.++.+++
T Consensus       227 r~lc~~~gillI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~av~~~~~  286 (443)
T PRK07483        227 REVCDRYGVLLILDEVMCGMGR-----TGT---LFACEEDGVAPDLVTIA--KGLGAGYQPIGAVLASDR  286 (443)
T ss_pred             HHHHHHhCCEEEEecceeCccc-----CcH---HHHHhhcCCCCCeeeeh--hhhccCccccEEEEEcHH
Confidence            9999999999999999988743     111   11122223  3888874  7755443 5788888754

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.04  E-value=3.7e-08  Score=101.56  Aligned_cols=174  Identities=18%  Similarity=0.171  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHhCCC-----CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCc-HHHHHh
Q 013675          172 FEAEVIAMTAALLGNK-----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSA-YDKAAQ  244 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~-----~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s-~~~a~~  244 (438)
                      ...++.+.+++++...     .+.    +  .++++||||+..|++.+|.+... +|. .+.+|+.-..+|.. ..-+..
T Consensus       108 ~~~~lae~L~~~~p~~~~~~~~~~----v--~f~~sGSEAvE~AlKlAr~~~~~-~g~~~r~~ii~~~~syHG~t~gals  180 (472)
T PRK08742        108 PAVQLAEQLLAIAPRQDGRAPLSK----V--FYADNGSAGVEVALKMAFHYFHN-RGEHRRTRFIALENGYHGETIGALA  180 (472)
T ss_pred             HHHHHHHHHHHhCCCcccCCCCCE----E--EEeCCchHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCCchhhhh
Confidence            3456677787776431     122    5  89999999999999999987543 232 24577766655433 322222


Q ss_pred             hcCc------------EEEEeeCCCCC------------ccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----H
Q 013675          245 YFNI------------KLWRVPVDKEF------------RADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----I  292 (438)
Q Consensus       245 ~~Gi------------~v~~v~~~~~~------------~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i  292 (438)
                      .-|.            .+..+|.....            .-+++.+++.++   +++.+|++.. .....|.+.|    +
T Consensus       181 ~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl  260 (472)
T PRK08742        181 VGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYL  260 (472)
T ss_pred             ccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHH
Confidence            2221            23334432111            113677788875   4577888876 3555676644    8


Q ss_pred             HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675          293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNR  362 (438)
Q Consensus       293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~  362 (438)
                      +++.++|++||+.+++|+++.||..     .|.   .+.+...|+  |+++++  |.+.++. ..|.++.+++
T Consensus       261 ~~lr~lc~~~gillI~DEV~TGfGR-----tG~---~~a~e~~gv~PDiv~~g--Kgl~gG~~Plaav~~~~e  323 (472)
T PRK08742        261 RRARELCDAHGAFLIADEIATGFGR-----TGT---LFACEQAGVMPDLLCLS--KGLTGGFLPLSAVLATQQ  323 (472)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCC-----Ccc---chHHHhcCCCCCEEEEc--ccccCCCCCcceeeccHH
Confidence            8999999999999999999988753     121   122233344  888884  7754442 4677777654

>PRK07480 putative aminotransferase; Validated

Probab=99.03  E-value=3.3e-08  Score=101.70  Aligned_cols=175  Identities=18%  Similarity=0.141  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      +...++.+.+++++..+.+.    +  .++++||||+..|++.+|.+... +|. .+.+|+.-..+ |....-+...-|.
T Consensus        94 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGseA~e~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~tl~a~s~~g~  166 (456)
T PRK07480         94 PPAIELAAKLAEVAPPGFNH----V--FFTNSGSEANDTVLRMVRHYWAL-KGKPQKKVIISRKNGYHGSTVAGASLGGM  166 (456)
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCcchhhhhccCC
Confidence            44556677788877533233    5  89999999999999999976432 232 24567665544 4433222221111


Q ss_pred             ------------EEEEeeCCCCC----ccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675          249 ------------KLWRVPVDKEF----RAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       249 ------------~v~~v~~~~~~----~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                                  .+..+|....+    ..+        ++++++.+.    +++.+|++.......|.+.|    +++|.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr  246 (456)
T PRK07480        167 KYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQ  246 (456)
T ss_pred             hhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHH
Confidence                        12233321100    011        366666553    46788888888777788766    89999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNR  362 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~  362 (438)
                      ++|++||+.+++|+++.||..     .|.   .+.+...|+  |++++  .|.+.+.. .+|.++.+++
T Consensus       247 ~lc~~~g~llI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~~  305 (456)
T PRK07480        247 RICRKYDILLVADEVICGFGR-----TGE---WFGSQHFGIKPDLMTI--AKGLTSGYIPMGAVGVGDR  305 (456)
T ss_pred             HHHHHcCCEEEEechhhCCCc-----Ccc---hhhhhhcCCCCCeeee--ehhhccCCccceEEEEcHH
Confidence            999999999999999987743     221   122223344  88776  47644432 4677777644

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.03  E-value=4.3e-08  Score=100.60  Aligned_cols=224  Identities=19%  Similarity=0.151  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC--
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN--  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G--  247 (438)
                      +.+.++.+.+++++.....+   .+  .|+++||||+..|++.+|.+    .|  +.+|+.-..+ |....-+...-+  
T Consensus        85 ~~~~~lae~L~~~~p~~~~~---~v--~f~~SGseA~e~AiklAr~~----tg--r~~ii~~~~~YHG~t~~als~s~~~  153 (445)
T PRK08593         85 EPLVRLAKKLCELAPGDFEK---RV--TFGLSGSDANDGIIKFARAY----TG--RPYIISFTNAYHGSTYGSLSMSGIS  153 (445)
T ss_pred             HHHHHHHHHHHHhCCCCCCC---EE--EECCchHHHHHHHHHHHHHh----hC--CCeEEEECCCcCCCcHHHHhhcCCC
Confidence            44556677788887533211   15  89999999999999999865    23  3466665544 554433332222  


Q ss_pred             -----------cEEEEeeCCCCCc-----cC-------HHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHH
Q 013675          248 -----------IKLWRVPVDKEFR-----AD-------VKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       248 -----------i~v~~v~~~~~~~-----~d-------~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                                 -.+..+|.....+     .+       ++++++.++     +++++|++.......|.+.|    +++|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l  233 (445)
T PRK08593        154 LNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEAL  233 (445)
T ss_pred             cccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHH
Confidence                       1234455432111     11       245555553     46889999988888888866    9999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      .++|++||+++++|+++.|+..     .|.   .+.....|  .|++++  .|.+.+....|+++.+++ +.+.. .  .
T Consensus       234 ~~lc~~~g~llI~DEv~tg~Gr-----tG~---~~a~~~~gv~pDi~t~--gK~l~~G~p~gav~~~~~-i~~~~-~--~  299 (445)
T PRK08593        234 YKFCREHGILFAVDDIQQGLGR-----TGK---WSSISHFNITPDLMSF--GKSLAGGMPMSAIVGRKE-IMESL-E--A  299 (445)
T ss_pred             HHHHHHcCCEEEEechhhCCCc-----Cch---HHHHHhcCCCCCEeee--cccccCCcccEEEEEcHH-HHhhh-c--c
Confidence            9999999999999999876632     111   01111123  377765  477544455788777643 32211 0  0


Q ss_pred             ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                          ... ..+..|. + ...++..++++.+-++   +..++..++.++|.+.|++
T Consensus       300 ----~~~-~~T~~~~-p-l~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~  345 (445)
T PRK08593        300 ----PAH-LFTTGAN-P-VSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQ  345 (445)
T ss_pred             ----CCC-CCCCCCC-H-HHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH
Confidence                000 0111111 1 1133455566555333   4566667777777777765

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.03  E-value=4.2e-08  Score=100.63  Aligned_cols=223  Identities=17%  Similarity=0.173  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC
Q 013675          171 RFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G  247 (438)
                      +...++.+.+++++...  ...    + -.++++||||+..|++.+|.+    .|  +++|+.-..+ |....-+....|
T Consensus        82 ~~~~~lae~L~~~~p~~~~~~~----~-~f~~~sGsEA~e~AlklAr~~----tg--r~~Ii~~~~~yHG~t~~~~s~t~  150 (442)
T TIGR00709        82 PLKDAFIEALLNIIPKRKMDYK----L-QFPGPSGADAVEAAIKLAKTY----TG--RTNVISFSGGFHGMTIGALAVTG  150 (442)
T ss_pred             HHHHHHHHHHHHhCCCcCCCcc----E-EEeCCCHHHHHHHHHHHHHHh----cC--CCeEEEEcCCcCCchHHHHhhcC
Confidence            44556777788887532  112    2 145689999999999999975    33  3567766555 444333333322


Q ss_pred             ------------cEEEEeeCCCCCcc--------CH----HHHHHhhc------cCcEEEEEecCCCCCccccC----HH
Q 013675          248 ------------IKLWRVPVDKEFRA--------DV----KAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQ  293 (438)
Q Consensus       248 ------------i~v~~v~~~~~~~~--------d~----~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~  293 (438)
                                  ..+..+|.....+.        +.    +.+++.++      +++.+|++.......|.+.+    ++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~  230 (442)
T TIGR00709       151 NLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQ  230 (442)
T ss_pred             ChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHH
Confidence                        12334443221111        11    22444443      35778888887777777643    88


Q ss_pred             HHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhc
Q 013675          294 ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA  371 (438)
Q Consensus       294 ~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~  371 (438)
                      +|.++|++||++++.|+++.||...     |.   .+.+...|  .|++++  .|.+.++..+|+++.+++ ....    
T Consensus       231 ~lr~lc~~~g~llI~DEV~tGfGRt-----G~---~~a~~~~gv~PDiv~~--gK~l~~G~Pigav~~~~~-~~~~----  295 (442)
T TIGR00709       231 KIREVTRKHDIKLILDEVQAGFGRS-----GT---MFAFEHAGIEPDFVVM--SKAVGGGLPLAVLLIAPE-FDAW----  295 (442)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCCC-----Cc---hhHHHHcCCCCcEEEE--cccccCCcccEEEEEchH-Hhcc----
Confidence            9999999999999999999887531     11   11111223  388885  577555566888888755 3211    


Q ss_pred             ccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       372 ~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                          .... ...+..|. +- ..++..++|+.+.++   +..++..++.++|.+.|++
T Consensus       296 ----~~~~-~~~T~~gn-pl-a~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~L~~  343 (442)
T TIGR00709       296 ----QPAG-HTGTFRGN-QL-AMVTGTEALNYWKDD---NLAQNAQERGERITSFLDD  343 (442)
T ss_pred             ----CCCc-CCCCCCcC-HH-HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence                0000 01111111 11 123444455444333   4455666777777777765

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.02  E-value=4.2e-08  Score=101.03  Aligned_cols=233  Identities=15%  Similarity=0.155  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      +.+.++.+.+++++..+.+.    +  .++++||||+..|++.+|.+... +|. .+.+|+.-..+ |....-+...-|-
T Consensus        99 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGseAve~AlklAr~~~~~-~g~tgr~~ii~~~~~YHG~t~~als~s~~  171 (460)
T PRK06916         99 VPSILLAEKLIEVVPEGLKK----V--FYSDSGATAVEIAIKMAFQYWQN-KGKPKKQRFVTLKNAYHGDTIGAVSVGAI  171 (460)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCcCCcccHHhHhccCC
Confidence            34556777788887533233    5  89999999999999999976433 232 24677766655 4433333332221


Q ss_pred             ------------EEEEeeCCCC----C--------ccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----HHHHH
Q 013675          249 ------------KLWRVPVDKE----F--------RADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELG  296 (438)
Q Consensus       249 ------------~v~~v~~~~~----~--------~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i~~I~  296 (438)
                                  .+..+|....    .        .-+++++++.++   +++.+|++.. .....|.+.|    ++++.
T Consensus       172 ~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr  251 (460)
T PRK06916        172 DLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLR  251 (460)
T ss_pred             cccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHH
Confidence                        2333433210    0        124677788885   4678888887 4666677643    88999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      ++|++||+++++|+++.|+..     .|.   .+.+...|  .|++++  -|.+.+. ..+|.++.+++ +... +.  .
T Consensus       252 ~lc~~~g~llI~DEV~TG~GR-----tG~---~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~e-i~~~-~~--~  317 (460)
T PRK06916        252 NLCTKYNVLFITDEVATGFGR-----TGK---MFACEHENVTPDIMTA--GKGLTGGYLPIAITVTTDE-IYNA-FY--G  317 (460)
T ss_pred             HHHHHcCCEEEeechhhCCCc-----Cch---hhHHHhcCCCCCeeee--ehhhhcCccccceeeecHH-HHHH-hh--c
Confidence            999999999999999887632     121   11222233  388876  4765444 25777777654 2211 10  0


Q ss_pred             ccCC-CccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          374 EWSG-GLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       374 ~~~g-~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++.. +...   ..++-.+..  .++..++|+.+.++   +..++..++.+++.+.|+++
T Consensus       318 ~~~~~~~~~---~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~l~~l  371 (460)
T PRK06916        318 DYEEQKTFF---HGHSYTGNPLGCAVALANLELYEKT---NLIEQVARKTEYVATQLEDL  371 (460)
T ss_pred             cccccCccc---cCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHh
Confidence            1100 0000   011111221  33444455544333   45677778888888888764

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.02  E-value=3.6e-08  Score=100.43  Aligned_cols=230  Identities=18%  Similarity=0.158  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI-  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi-  248 (438)
                      ...++.+.++++...+.+.    +  .++++||||+..|++.+|.+... +|. .+.+|+.-..+ |-...-+....+- 
T Consensus        84 ~~~~lae~L~~~~p~~~~~----v--~f~~SGseA~e~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~~als~~~~~  156 (422)
T PRK05630         84 PAIKLTRKLLNLTDNGLDH----V--FYSDSGSVSVEVAIKMALQYSKG-QGHPERTRLLTWRSGYHGDTFAAMSVCDPE  156 (422)
T ss_pred             HHHHHHHHHHhhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCccHHHhccCCCc
Confidence            3455666777776432233    5  89999999999999999986533 232 24567666554 4433333322110 


Q ss_pred             ------------EEEEeeCCCCCccC-------HHHHHHhhccCcEEEEEecC-CCCCccccC----HHHHHHHHHHcCC
Q 013675          249 ------------KLWRVPVDKEFRAD-------VKAIKKYINRNTVLIVGSAP-GFPHGIIDP----IQELGELALSHGT  304 (438)
Q Consensus       249 ------------~v~~v~~~~~~~~d-------~~~Le~~I~~~t~~vv~~~~-~~~tG~idd----i~~I~~la~~~~i  304 (438)
                                  ....+|.......+       .+.+++.+.+++.+|++... ....|.+.|    +++|.++|++||+
T Consensus       157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~  236 (422)
T PRK05630        157 GGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDI  236 (422)
T ss_pred             ccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCC
Confidence                        22334432111111       34566666677888888874 666676533    8999999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccC
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYV  381 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~  381 (438)
                      ++++|+++.|+..     .|.   -+.+...|+  |++++  .|.+.+. ...|+++.+++ +... + ..+ +..+.+ 
T Consensus       237 llI~DEv~tG~Gr-----tG~---~~a~~~~gv~PDi~t~--gK~l~gG~~p~~av~~~~~-i~~~-~-~~~-~~~~~~-  301 (422)
T PRK05630        237 LLIADEIATGFGR-----TGE---LFATLAAGVTPDIMCV--GKALTGGFMSFAATLCTDK-VAQL-I-STP-NGGGAL-  301 (422)
T ss_pred             EEEEecceeCCCc-----Cch---hhHHHhcCCCCCeeee--echhhcCccccceeeccHH-HHHH-H-hcc-CCCCcc-
Confidence            9999999877643     121   122222343  78866  5875443 24566666643 2211 0 000 000000 


Q ss_pred             CCCccCCC-CCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          382 SPTVAGSR-PGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       382 ~~~~~gsr-~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                         ..++. .+.  ..++..++++.+.++   +..++..++.++|++.|++
T Consensus       302 ---~h~~T~~g~Pla~aaa~aaL~~l~~~---~~~~~~~~~g~~l~~~L~~  346 (422)
T PRK05630        302 ---MHGPTFMANPLACAVAHASLEIIETG---MWRKQVKRIEAELIAGLSP  346 (422)
T ss_pred             ---ccCCCCcCCHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHH
Confidence               01111 122  133445566665433   3445666777777776654

>PRK06917 hypothetical protein; Provisional

Probab=99.01  E-value=4.4e-08  Score=100.57  Aligned_cols=230  Identities=13%  Similarity=0.075  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCc-HHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSA-YDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s-~~~a~~~~Gi  248 (438)
                      +...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+... +|. .+.+|+.-..+|.. ..-+...-|.
T Consensus        74 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGsEAve~AlklAr~~~~~-rg~t~r~~ii~~~~~yHG~t~~als~~~~  146 (447)
T PRK06917         74 EPAEKLAKKLSDLSPGDLNW----S--FFVNSGSEANETAMKIAIQHFQE-RGIQGKHKILSRWMSYHGITMGALSMSGH  146 (447)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCChHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCccHHHHHhcCC
Confidence            44566777888887543232    4  89999999999999999876543 332 24667766655433 3333322221


Q ss_pred             ------------EEEEeeCCCCCc------------cCHHHHHHhhc----cCcEEEEEecCCCCC-ccccC----HHHH
Q 013675          249 ------------KLWRVPVDKEFR------------ADVKAIKKYIN----RNTVLIVGSAPGFPH-GIIDP----IQEL  295 (438)
Q Consensus       249 ------------~v~~v~~~~~~~------------~d~~~Le~~I~----~~t~~vv~~~~~~~t-G~idd----i~~I  295 (438)
                                  .+..+|.....+            -|++.+++.++    +++.+|++....... |.+.|    +++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~l  226 (447)
T PRK06917        147 PLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVI  226 (447)
T ss_pred             ccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHH
Confidence                        122233211110            13467787775    357888888765533 45543    8899


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~  372 (438)
                      .++|++||+.+++|+++.||..     .|.   .+.....|  .|++++  .|.+.+.. ..|+++.+++ +... +...
T Consensus       227 r~lc~~~g~llI~DEv~tGfGR-----tG~---~~a~~~~gv~PDi~~~--gK~l~~G~~Pi~a~~~~~~-i~~~-~~~~  294 (447)
T PRK06917        227 KEICDHYDILFIADEVMTGLGR-----TGA---MFAMEHWGVEPDIMTL--GKGLGAGYTPIAATVVSDR-VMEP-ILRG  294 (447)
T ss_pred             HHHHHHcCCEEEEechhhCcCc-----ccc---hhhHHhcCCCCCEEEe--eehhccCCcceEEEEEcHH-HHHH-Hhcc
Confidence            9999999999999999887643     121   12122223  388776  47755443 4677777653 3211 1000


Q ss_pred             cccCCCccCCCCcc-CCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          373 TEWSGGLYVSPTVA-GSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       373 ~~~~g~~~~~~~~~-gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .   + .    ... ++-.+..  .++..++++.+.++   +..++..++.++|.+.|+++
T Consensus       295 ~---~-~----~~~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l  344 (447)
T PRK06917        295 S---R-S----IMSGHTLSANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQKV  344 (447)
T ss_pred             C---c-c----cccccCCCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHH
Confidence            0   0 0    011 1222211  34555566555333   45567777777777777653

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.01  E-value=6.1e-08  Score=98.61  Aligned_cols=175  Identities=17%  Similarity=0.133  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN-  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G-  247 (438)
                      +...++.+.+++++..+... ...+  .| +++||||+..|++.+|.+    .|  +++|+.-..+ |-...-+....| 
T Consensus        78 ~~~~~lae~l~~~~~~~~~~-~~~~--~f~~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~als~~~~  148 (412)
T TIGR02407        78 EAKREFLETFNEIILKPRGL-DYKV--QFPGPTGTNAVESALKLARKV----TG--RSNVVSFTNAFHGMTLGSLSVTGN  148 (412)
T ss_pred             HHHHHHHHHHHHhccCccCC-CceE--EEeCCCchHHHHHHHHHHhhh----cC--CCeEEEECCCcCCchHHHHHhcCC
Confidence            44556666777765322110 0012  45 589999999999999975    23  3567765555 443333332221 


Q ss_pred             -----------cEEEEeeCCCCC---ccCHHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675          248 -----------IKLWRVPVDKEF---RADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQELGELALSHG  303 (438)
Q Consensus       248 -----------i~v~~v~~~~~~---~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~  303 (438)
                                 ..+..+|.+.-.   .-+++.+++.++      +++.+|++.....+.|.+.+    +++|.++|++||
T Consensus       149 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g  228 (412)
T TIGR02407       149 RFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHD  228 (412)
T ss_pred             cccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence                       133445542100   124777888886      35688888888888887533    899999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCC-CCCcEEEEEecc
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLA-PKGTSVVLYRNR  362 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~-p~g~g~l~~r~~  362 (438)
                      +++++|++++|+..     .|... .++......|+++++  |++.+ ...+|+++.+++
T Consensus       229 ~llI~DEV~tG~GR-----tG~~~-a~~~~~v~PDi~~~~--K~lg~~G~pigav~~~~~  280 (412)
T TIGR02407       229 ILLIVDDIQAGCGR-----TGTFF-SFEPAGIEPDIVCLS--KSISGYGLPLALTLIKPE  280 (412)
T ss_pred             CEEEEechhhCCCc-----cchhH-HhcccCCCCCEEEec--hhccCCccceeEEEEchh
Confidence            99999999987643     11100 011111124877765  99544 455899888754

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.00  E-value=1.2e-08  Score=98.20  Aligned_cols=161  Identities=23%  Similarity=0.319  Sum_probs=101.9

Q ss_pred             HHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-cCCCcCcHHHHH----------hhcC
Q 013675          179 MTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-PVSAHSAYDKAA----------QYFN  247 (438)
Q Consensus       179 ~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-~~~~h~s~~~a~----------~~~G  247 (438)
                      ..|+.||.+..-     +-.---+||.|+.+++.+...     +|   |+++. +..-|-...++.          +-+|
T Consensus        62 iyA~vfgaE~AL-----VRpq~vSGTHAi~~~Lfg~Lr-----pG---D~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~G  128 (403)
T PF06838_consen   62 IYADVFGAEDAL-----VRPQFVSGTHAIALALFGVLR-----PG---DELLSITGKPYDTLEEVIGIRGNGPGSLKEFG  128 (403)
T ss_dssp             HHHHHCT-SEEE-----EETTS-SHHHHHHHHHHHH-------TT----EEEESSSS--CCHHHHHTSSSSSSSSTGGGT
T ss_pred             HHHHHhCchhhh-----hcccccchHHHHHHHHHhcCC-----CC---CeEEEcCCCchhhHHHHhCCCCCCCCChHHhC
Confidence            588999997542     112235799999999999773     88   88874 444455555555          3457


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCC----CCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhh
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPG----FPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~----~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~  321 (438)
                      ++.+.||+.+++.+|.+.++++++++|++|.+.--.    -+.=.+++|+++.+.+|+.  ++.+.||-|||-|+-    
T Consensus       129 i~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE----  204 (403)
T PF06838_consen  129 IKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVE----  204 (403)
T ss_dssp             -EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTS----
T ss_pred             ceeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecc----
Confidence            899999999999999999999999999999886431    1222456677777777764  689999999997653    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCC---CCCCCcEEEEEeccccc
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYG---LAPKGTSVVLYRNREIR  365 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~---~~p~g~g~l~~r~~~~~  365 (438)
                             .......|+|.+..|.=|..   .+|.| |++.-| +++.
T Consensus       205 -------~~EP~~vGADl~aGSLIKNpGGgiAptG-GYIaGr-~~lV  242 (403)
T PF06838_consen  205 -------TQEPTEVGADLMAGSLIKNPGGGIAPTG-GYIAGR-KDLV  242 (403)
T ss_dssp             -------SS-GGGGT-SEEEEETTSGGGTTT-SS--EEEEES-HHHH
T ss_pred             -------ccCccccchhheeccceeCCCCCccCcC-CEEech-HHHH
Confidence                   23345568999999999993   34443 665555 4443

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.98  E-value=6.5e-08  Score=99.67  Aligned_cols=222  Identities=18%  Similarity=0.257  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEc-CChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC---
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMT-SGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN---  247 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t-~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G---  247 (438)
                      +.++.+.++++...+-.. ...+  .++ ++||||+..|++.+|.+    .|  +++|+.-..+ |-...-+...-|   
T Consensus       108 ~~~la~~L~~~~p~~~~~-~~~v--~f~~~SGSEAve~AlklAr~~----tg--r~~ii~~~~~yHG~t~~als~t~~~~  178 (464)
T PRK06938        108 KDQFVQDLFASLPEAFAR-EAKI--QFCGPTGTDAVEAALKLVKTA----TG--RSTVLSFQGGYHGMSQGALSLMGNLG  178 (464)
T ss_pred             HHHHHHHHHHhCcccccc-cceE--EEeCCCcHHHHHHHHHHHHHh----hC--CCeEEEECCccCCccHHHHhhcCCcc
Confidence            344555666665322110 0012  454 79999999999999864    33  3567665554 443333332211   


Q ss_pred             -------c--EEEEeeCCCCCc------------cCHHHHHHhhcc------CcEEEEEecCCCCCccccC----HHHHH
Q 013675          248 -------I--KLWRVPVDKEFR------------ADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       248 -------i--~v~~v~~~~~~~------------~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                             .  .+..+|...+.+            .+++.+++.+.+      ++.+|++......-|.+.|    ++++.
T Consensus       179 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr  258 (464)
T PRK06938        179 PKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLR  258 (464)
T ss_pred             ccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHH
Confidence                   1  244555432211            246778888863      4788888877776777654    88999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE  374 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~  374 (438)
                      ++|++||+.+++|+++.||..     .|.   -+.+...|  .|+++++  |.+.+...+|.++.+++ + . .      
T Consensus       259 ~lc~~~giLlI~DEV~tGfGR-----tG~---~~a~e~~gv~PDiv~~g--KglggG~PlsAv~~~~~-~-~-~------  319 (464)
T PRK06938        259 RITEEAGIPLIVDEIQSGFGR-----TGK---MFAFEHAGIIPDVVVLS--KAIGGSLPLAVVVYREW-L-D-T------  319 (464)
T ss_pred             HHHHHcCCEEEEeccccCCCc-----CcH---HHHHHhcCCCCCEEEee--ccccCCCceEEEeehhH-h-h-c------
Confidence            999999999999999988743     111   11222233  3888885  77555566888888754 2 1 1      


Q ss_pred             cCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          375 WSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +..+.     ..++-.+..  .++..++|+.+.++   +..++..++.++|.+.|+++
T Consensus       320 ~~~~~-----~~~T~~gnpla~Aaa~a~L~~l~~~---~l~~~~~~~G~~l~~~L~~l  369 (464)
T PRK06938        320 WQPGA-----HAGTFRGNQMAMAAGSATLRYIKEH---RLAEHAAAMGERLREHLRQL  369 (464)
T ss_pred             cCCCC-----CCCCCCcCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHH
Confidence            11110     111111211  33444555555433   44556666677777777653

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=98.98  E-value=1e-07  Score=97.27  Aligned_cols=170  Identities=19%  Similarity=0.165  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC---
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN---  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G---  247 (438)
                      ...++.+.+++++..+..+   .+  .++++||||+..|++.+|.+    .|  +++|+.-..+ |....-+....|   
T Consensus        84 ~~~~la~~l~~~~p~~~~~---~v--~f~~SGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~~~~~~~~  152 (425)
T PRK07495         84 NYVRLAERLNALVPGDFAK---KT--IFVTTGAEAVENAVKIARAA----TG--RSAVIAFGGGFHGRTFMGMSLTGKVV  152 (425)
T ss_pred             HHHHHHHHHHHhCCCCCCC---EE--EECCchHHHHHHHHHHHHHh----hC--CCeEEEECCCcCCccHHHhhhcCCCc
Confidence            4455667788877533211   25  89999999999999999865    33  3567765554 433222221111   


Q ss_pred             ----------cEEEEeeCCCC-Ccc----CHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675          248 ----------IKLWRVPVDKE-FRA----DVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQELGELALSHG  303 (438)
Q Consensus       248 ----------i~v~~v~~~~~-~~~----d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~  303 (438)
                                -.+..+|.+.+ ..+    +++++++.++     +++++|++.......|.+.+    +++|.++|++||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g  232 (425)
T PRK07495        153 PYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHG  232 (425)
T ss_pred             ccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence                      13445555321 112    2455677764     34778887777666775533    889999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +++++|++++|+..     .|.   .+.+...|  .|++++  .|.+.++..+|+++.+++
T Consensus       233 ~llI~DEv~tG~gr-----~G~---~~a~~~~gv~pDi~tl--sK~l~~G~pigav~~~~~  283 (425)
T PRK07495        233 ILLIADEVQTGFAR-----TGK---LFAMEHHEVAADLTTM--AKGLAGGFPLAAVTGRAE  283 (425)
T ss_pred             CEEEEechhhcCCc-----CCC---ceeecccCCCCCEEee--hhhhcCCccceEEEEcHH
Confidence            99999999987643     121   12222223  376665  487655556788887643

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=98.97  E-value=7.8e-08  Score=98.08  Aligned_cols=233  Identities=16%  Similarity=0.152  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc--
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI--  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi--  248 (438)
                      ...++.+.+++++..+.+.    +  .++++||||+..|++.+|.+... +|..+.+|+.-..+ |....-+....+-  
T Consensus        87 ~~~~la~~L~~~~p~~~~~----v--~f~~SGsEAve~AlklAr~~~~~-~g~~r~kii~~~~~yHG~t~~a~s~~~~~~  159 (428)
T PRK07986         87 PAIELCRKLVAMTPQPLEC----V--FLADSGSVAVEVAMKMALQYWQA-KGEPRQRFLTLRHGYHGDTFGAMSVCDPDN  159 (428)
T ss_pred             HHHHHHHHHHhhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEECCCcCCCcHhhhcccCCch
Confidence            3456667777776533232    5  89999999999999999976432 23335677766655 4332222222110  


Q ss_pred             -----------EEEEeeCCC-C----C-ccCHHHHHHhhc---cCcEEEEEecC-CCCCcccc----CHHHHHHHHHHcC
Q 013675          249 -----------KLWRVPVDK-E----F-RADVKAIKKYIN---RNTVLIVGSAP-GFPHGIID----PIQELGELALSHG  303 (438)
Q Consensus       249 -----------~v~~v~~~~-~----~-~~d~~~Le~~I~---~~t~~vv~~~~-~~~tG~id----di~~I~~la~~~~  303 (438)
                                 .+..+|... .    + .-|++++++.++   +++.+|++... +...|.+.    .+++|.++|++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g  239 (428)
T PRK07986        160 SMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREG  239 (428)
T ss_pred             hhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence                       122333221 1    1 136678888885   35667777663 44456532    2899999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCcc
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      +++++|+++.|+..     .|.   .+.....|+  |++++  .|.+.+. ..+|.++.+++ +.+...  ...+ +...
T Consensus       240 ~lLI~DEv~tG~Gr-----tG~---~fa~~~~gv~PDi~t~--gK~l~gG~~p~~av~~~~~-i~~~~~--~~~~-~~~~  305 (428)
T PRK07986        240 ILLIADEIATGFGR-----TGK---LFACEHAGIAPDILCL--GKALTGGTMTLSATLTTRE-VAETIS--NGEA-GCFM  305 (428)
T ss_pred             CEEEEeccccCCcc-----CCC---eeeecccCCCCCEEEe--chhhhCCcccCcchhchHH-HHHHhh--cCCC-Cccc
Confidence            99999999877632     221   122233343  78864  5775444 24566666543 322110  0000 0000


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...+..|.  ....++..++|+.+.++   +..++..++.+++.+.|+++
T Consensus       306 ~~~T~~g~--p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l  350 (428)
T PRK07986        306 HGPTFMGN--PLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPL  350 (428)
T ss_pred             cCCCCCcC--HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHH
Confidence            11111111  11234555566655433   45667777788888877764

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=98.97  E-value=4.1e-08  Score=100.33  Aligned_cols=170  Identities=16%  Similarity=0.118  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC-----
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN-----  247 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G-----  247 (438)
                      .++.+.+++..+.+..+   .+  .++++|++|+..|++.++.+..      ++.|+.-..+ |....-+...-+     
T Consensus        87 ~~la~~l~~~~~~~~~~---~~--~f~~sGsea~e~Alklar~~~~------r~~iv~~~~~yHG~~~~~~~~~~~~~~~  155 (425)
T PRK08088         87 LELCEKMNQKVPGDFAK---KT--LLVTTGSEAVENAVKIARAATK------RSGVIAFTGAYHGRTHYTLALTGKVNPY  155 (425)
T ss_pred             HHHHHHHHHhCCCCCCC---EE--EEeCCcHHHHHHHHHHHHHHhC------CCeEEEECCccCCccHHHHHhhCCCCcc
Confidence            36667777777644321   14  7899999999999999886521      1345554554 444333222211     


Q ss_pred             ---c-----EEEE--eeCCCCC-cc--CHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCe
Q 013675          248 ---I-----KLWR--VPVDKEF-RA--DVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTC  305 (438)
Q Consensus       248 ---i-----~v~~--v~~~~~~-~~--d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~  305 (438)
                         .     .+..  +|.+.++ ..  ++++++++++     ++.++|++.......|.+.+    +++|.++|++||++
T Consensus       156 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~  235 (425)
T PRK08088        156 SAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIM  235 (425)
T ss_pred             ccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence               0     1112  2222221 11  1567888885     34677777766665566655    89999999999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +++|.+++++..+     |. ...++....-.|+.  +..|.+.+...+|+++.+.+
T Consensus       236 lI~Dev~~g~g~~-----g~-~~~~~~~~~~pdi~--s~sK~l~~G~rig~v~~~~~  284 (425)
T PRK08088        236 LIADEVQTGAGRT-----GT-LFAMEQMGVAADLT--TFAKSIAGGFPLAGVTGRAE  284 (425)
T ss_pred             EEEeccccCCCcC-----cc-hhHHhhcCCCCCEE--EEeccccCCCcceeeEecHH
Confidence            9999999875321     11 00111111113544  44688655566898887543

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=98.96  E-value=9.1e-08  Score=98.40  Aligned_cols=221  Identities=22%  Similarity=0.205  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC---
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN---  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G---  247 (438)
                      ...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+    .|  +++|+.-..+ |-....+....|   
T Consensus        97 ~~~~lae~L~~~~p~~~~~----v--~f~~SGsEA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~a~s~~~~~~  164 (457)
T PRK05639         97 RAIRVAEKLAEISPIENPK----V--LFGLSGSDAVDMAIKVSKFS----TR--RPWILAFIGAYHGQTLGATSVAAFQS  164 (457)
T ss_pred             HHHHHHHHHHhhCCCCcCE----E--EEeCchHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCccHHHHHHcCCCc
Confidence            3445667788876543233    5  89999999999999999964    23  3567765554 443333332211   


Q ss_pred             -----c-----EEEEeeCCCCCc--------cCH--------HHHHHhh------ccCcEEEEEecCCCCCccccC----
Q 013675          248 -----I-----KLWRVPVDKEFR--------ADV--------KAIKKYI------NRNTVLIVGSAPGFPHGIIDP----  291 (438)
Q Consensus       248 -----i-----~v~~v~~~~~~~--------~d~--------~~Le~~I------~~~t~~vv~~~~~~~tG~idd----  291 (438)
                           .     .++.+|.....+        -|.        +.+++.+      .+++++|++.......|.+.|    
T Consensus       165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~y  244 (457)
T PRK05639        165 SQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENF  244 (457)
T ss_pred             ccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHH
Confidence                 1     244555432111        122        3456554      246889998888777787655    


Q ss_pred             HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccch
Q 013675          292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF  369 (438)
Q Consensus       292 i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~  369 (438)
                      +++|.++|++||+++++|+++.||..     .|.   .+.....|  .|++++  .|.+.+..+.|+++.+++ +...  
T Consensus       245 l~~l~~lc~~~g~llI~DEv~tG~Gr-----tG~---~~a~~~~gv~PDiv~~--gK~l~gG~pi~av~~~~~-i~~~--  311 (457)
T PRK05639        245 FKELKKLLDEHGILLVMDEVQTGIGR-----TGK---WFASEWFEVKPDLIIF--GKGVASGMGLSGVIGRKE-LMDL--  311 (457)
T ss_pred             HHHHHHHHHHcCCEEEEechhhccCc-----Cch---HHHHHhcCCCCCEEEe--chhhcCCCcceeEEehHH-HHhh--
Confidence            88999999999999999999887643     111   01111122  488885  588665677788887654 3321  


Q ss_pred             hcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       370 ~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      .      .+.+. .+..| .|- ..++..++|+.+..+   +..++..++.++|++.|++
T Consensus       312 ~------~~~~~-~T~~g-~p~-~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~  359 (457)
T PRK05639        312 T------SGSAL-LTPAA-NPV-ISAAAEATLEIIEEE---NLLKNALKVGEFIKKRLLE  359 (457)
T ss_pred             c------CCCcc-cCCCc-CHH-HHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHH
Confidence            0      01110 11111 111 133444555555433   4456666677788777765

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.95  E-value=7.9e-10  Score=107.23  Aligned_cols=222  Identities=19%  Similarity=0.207  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC------cHHHHHhhcCc
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS------AYDKAAQYFNI  248 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~------s~~~a~~~~Gi  248 (438)
                      .+.+.++.++|+...        +++++...|+++++.++.      +|   .+||++...-.      .+....+.-|.
T Consensus        51 ~v~~ll~~ltgAeaA--------~VvNnnaAAv~L~l~~la------~~---~EvIvsRGelVeiGgsFRip~vm~~sGa  113 (367)
T PF03841_consen   51 HVEELLCELTGAEAA--------LVVNNNAAAVLLALNTLA------KG---KEVIVSRGELVEIGGSFRIPDVMRQSGA  113 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccc--------cccccccccccccccccc------cc---cccccccccccccccccccccccccccc
Confidence            455678889988743        688888899999888775      34   57887766432      24556666788


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCC--ccc--cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH--GII--DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~t--G~i--ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      ++++|-.  +.+..+++++++|+++|.++.-.|++|..  |..  -+++++++++++|++++++|...|.+. ++ ...|
T Consensus       114 ~lvEVGt--tN~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~-dl-~~~g  189 (367)
T PF03841_consen  114 RLVEVGT--TNRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLV-DL-SPYG  189 (367)
T ss_dssp             -------------------------------------------------HHHHHHHHHT--EEEE-TTHHHH-HH-HTT-
T ss_pred             ccccccc--ccccccccccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCc-Cc-cccc
Confidence            8887765  34667899999999999999988877752  222  369999999999999999998876543 21 2233


Q ss_pred             CC-CC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC-chHHHHHHHH
Q 013675          325 YP-IP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG-GLIAGAWAAL  401 (438)
Q Consensus       325 ~~-~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~-~~ia~~~aal  401 (438)
                      .+ .| -.+....|+|.+++|+.|.+.+|. +|+++-|. ++...... .+          -...-|.+ ..++++.++|
T Consensus       190 l~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk-~lI~~lk~-~p----------l~RalrvdK~tla~L~atL  256 (367)
T PF03841_consen  190 LPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKK-ELIEKLKK-HP----------LGRALRVDKLTLAALEATL  256 (367)
T ss_dssp             ---------CCCCT-SEEEEETTSSSSS-S--EEEEEEH-HHHHHHHH-HH----------HTTT-B--HHHHHHHHHHH
T ss_pred             CccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCH-HHHHHHhh-CC----------CcceEeeCHHHHHHHHHHH
Confidence            21 11 134456789999999999987776 68876664 44332110 00          00111222 2367888888


Q ss_pred             HHHcHH-----------HHHHHHHHHHHHHHHHHHHhhcC
Q 013675          402 MSLGQE-----------GYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       402 ~~~g~~-----------g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +.|-..           -+.+..+.+.+.|+.+.+.|+..
T Consensus       257 ~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~  296 (367)
T PF03841_consen  257 RLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA  296 (367)
T ss_dssp             HH--------------------------------------
T ss_pred             HHHHHhhccccccccccccccccccccccccccccccccc
Confidence            876421           12333445556677777766654

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.95  E-value=7.2e-08  Score=98.39  Aligned_cols=224  Identities=15%  Similarity=0.141  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcC
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~G  247 (438)
                      .+.++.+.++++++...+.    +  .|+++||||+..|++.+|.+    .|  +++|+.-..+|..+.    .+...-+
T Consensus        94 ~~~~la~~L~~~~~~~~~~----v--~f~~SGsEA~e~AiklAr~~----tg--r~~ii~~~~~yHG~td~~~~~~~~~~  161 (433)
T PRK00615         94 QEILFAEELFSYLGLEDHK----I--RFVSSGTEATMTAVRLARGI----TG--RSIIIKFLGCYHGHADTLLQGISFSE  161 (433)
T ss_pred             HHHHHHHHHHHhCCCCcCE----E--EEeCchHHHHHHHHHHHHHh----hC--CCEEEEEcCccCCCCcccCcccccCC
Confidence            4556677788877543233    5  89999999999999999975    23  356665554433321    1111111


Q ss_pred             cE---EEE-e--e-CCCC----CccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEe
Q 013675          248 IK---LWR-V--P-VDKE----FRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVD  309 (438)
Q Consensus       248 i~---v~~-v--~-~~~~----~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD  309 (438)
                      -.   ... .  + ....    ..-|++++++.+.   +++.+|++.......|.+.|    +++|.++|++||+.+++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~D  241 (433)
T PRK00615        162 TSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMD  241 (433)
T ss_pred             CCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence            00   000 0  0 0000    0127889998885   34678888887777788776    569999999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccC
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG  387 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g  387 (438)
                      +++.|+-.      |.   .+.....|  .|++++  .|.+.+...+|+++.+++ +.+....     .+..+...+..|
T Consensus       242 Ev~tG~R~------G~---~ga~~~~gv~PDi~~~--gK~lggG~p~~av~~~~~-i~~~~~~-----~~~~~~~~T~~g  304 (433)
T PRK00615        242 EVVTGFRV------AQ---GGAAAIYHVKPDITVY--GKILGGGLPAAAVVAHKS-IMDHLAP-----EGTIFQAGTLSG  304 (433)
T ss_pred             cccccccc------cH---hHHHHhcCCCCCeEEE--cccccCCcceeeeeecHH-HHhhhcC-----CCCcccCCCCcc
Confidence            99876511      10   01011112  477764  587544444677777644 3221100     011111111111


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      . | ...++..++|+.+.++   +..++..++.+++.+.|++
T Consensus       305 ~-p-~~~aa~la~L~~i~~~---~~~~~~~~~g~~l~~~l~~  341 (433)
T PRK00615        305 N-P-LAMAAGKASINLCREQ---GFYTQLSTLEQNFLSPIEE  341 (433)
T ss_pred             c-H-HHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHH
Confidence            1 1 1244555666665433   3455666666666555543

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.95  E-value=1.2e-07  Score=97.54  Aligned_cols=222  Identities=16%  Similarity=0.117  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC-CcCcHHHHHhhcCc-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS-AHSAYDKAAQYFNI-  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~-~h~s~~~a~~~~Gi-  248 (438)
                      +...++.+.++++++.+.+.    +  .|+++||||+..|++.+|.+    .|  +++|+.-.. .|.....+...-|- 
T Consensus       113 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~----tg--r~~ii~~~~~yHG~t~~a~s~~~~~  180 (459)
T PRK06082        113 ETAIECAEKLTEIAGGELNR----V--LFAPGGTSAIGMALKLARHI----TG--NFKVVSLWDSFHGASLDAISVGGEA  180 (459)
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EECCCcHHHHHHHHHHHHHh----cC--CCEEEEEeCCCcCccHHHHhhcCCc
Confidence            45566777788887543233    5  89999999999999999865    23  356665544 45444333332221 


Q ss_pred             -----------EEEEeeCCCCCc-----c------CHHHHHHhhc--cCcEEEEEecCCCCCccccC---HHHHHHHHHH
Q 013675          249 -----------KLWRVPVDKEFR-----A------DVKAIKKYIN--RNTVLIVGSAPGFPHGIIDP---IQELGELALS  301 (438)
Q Consensus       249 -----------~v~~v~~~~~~~-----~------d~~~Le~~I~--~~t~~vv~~~~~~~tG~idd---i~~I~~la~~  301 (438)
                                 .+..+|.....+     .      +++++++.++  +++++|++.......+.+.|   +++|.++|++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~  260 (459)
T PRK06082        181 CFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDK  260 (459)
T ss_pred             ccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHH
Confidence                       133344221111     1      2356788875  35778888776654333444   8999999999


Q ss_pred             cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcccccCCC
Q 013675          302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVTEWSGG  378 (438)
Q Consensus       302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~~~g~  378 (438)
                      ||+.+++|++++|+..     .|.   .+.+...|  .|++++  .|.+.+.. .+|.++.+++ +...  .     .+.
T Consensus       261 ~g~llI~DEV~tG~GR-----tG~---~fa~e~~gv~PDiv~~--gKgl~gG~~P~~av~~~~~-i~~~--~-----~~~  322 (459)
T PRK06082        261 HNVLLIIDEIPNGMGR-----TGE---WFTHQAYGIEPDILCI--GKGLGGGLVPIAAMITKDK-YNTA--A-----QIS  322 (459)
T ss_pred             cCCEEEEechhhCCCc-----cch---hhHhHhhCCCCCEEEe--cccccCCCCcceEEEEcHH-HHhh--c-----cCC
Confidence            9999999999987643     221   11222233  488875  58755542 5677777654 2211  0     011


Q ss_pred             ccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          379 LYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       379 ~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                       ..   . ++-.+..  .++..++|+.+.++   +..++..++.++|.+.|+++
T Consensus       323 -~~---~-~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l  368 (459)
T PRK06082        323 -LG---H-YTHEKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLEM  368 (459)
T ss_pred             -CC---C-CCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence             00   1 1222222  33444556555333   46677777888888887654

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=98.94  E-value=5.4e-09  Score=95.40  Aligned_cols=206  Identities=21%  Similarity=0.203  Sum_probs=138.8

Q ss_pred             eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc--CcE
Q 013675          198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR--NTV  275 (438)
Q Consensus       198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~--~t~  275 (438)
                      .+.-|+.|.+.+.+++.+.     +|  +++|+...++|..+.-.+...+++++.+|.++++.+|++++.+.+..  .++
T Consensus        90 c~GvGsDE~ID~iiR~~c~-----PG--keKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK  162 (375)
T KOG0633|consen   90 CVGVGSDELIDLIIRCVCD-----PG--KEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIK  162 (375)
T ss_pred             EEecCcHHHHHHHHhheec-----CC--ccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccce
Confidence            6888999999999999885     66  46799999999888888888899999999999999999999998864  488


Q ss_pred             EEEEecCCCCCccccCHHHHHHHHHHc-CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEE-eCCCCC-CCCCC
Q 013675          276 LIVGSAPGFPHGIIDPIQELGELALSH-GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSIS-VDVHKY-GLAPK  352 (438)
Q Consensus       276 ~vv~~~~~~~tG~iddi~~I~~la~~~-~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis-~s~hK~-~~~p~  352 (438)
                      +++++.|+||||.+-..+.|.++.+-- |..++||+||-.|.-     .+... ++--..+  ..++ -...|. |.++.
T Consensus       163 ~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg-----~~S~~-~lV~kYp--NLivlqTlSKsfGLAGi  234 (375)
T KOG0633|consen  163 CIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSG-----VESRM-KLVKKYP--NLIVLQTLSKSFGLAGI  234 (375)
T ss_pred             EEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeecc-----ccccc-hHhHhCC--ceeehhhhhhhcCccee
Confidence            999999999999998877777777643 688999999854321     00001 0100111  2222 233454 45555


Q ss_pred             CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          353 GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       353 g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      ..|+-++. ..+.+........|.-          |-     ++-.+||..+   ..+.++...+.+.+-..+|.+.|++
T Consensus       235 RvG~~~~~-~~ia~iln~~KaPYNi----------S~-----~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~  298 (375)
T KOG0633|consen  235 RVGYGAFP-LSIAEILNRAKAPYNI----------SV-----AGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTE  298 (375)
T ss_pred             Eeeccccc-HHHHHHHHhccCCccc----------cc-----hhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhc
Confidence            56654433 3333222222222111          11     1222333333   2356777788888889999999999


Q ss_pred             CCCcc
Q 013675          430 FPMFL  434 (438)
Q Consensus       430 ~~g~~  434 (438)
                      +|++.
T Consensus       299 v~~~~  303 (375)
T KOG0633|consen  299 VPFLN  303 (375)
T ss_pred             Ccccc
Confidence            88764

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=98.94  E-value=1.1e-07  Score=97.07  Aligned_cols=168  Identities=20%  Similarity=0.218  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC---
Q 013675          173 EAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN---  247 (438)
Q Consensus       173 e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G---  247 (438)
                      ..++.+.++++.... .+.    +  .++++||||+..|++.+|.+    .|  +++|+.-..+ |....-+...-|   
T Consensus        78 ~~~la~~l~~~~p~~~~~~----v--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~~~~~~~~  145 (420)
T TIGR00700        78 YVALAEKLNRIAPGSGPKK----S--VFFNSGAEAVENAVKIARSY----TG--RPGVVAFDHGFHGRTNMTMALTAKVM  145 (420)
T ss_pred             HHHHHHHHHHhCCCCCCCE----E--EEeCCcHHHHHHHHHHHHHh----cC--CCcEEEECCCcCCCcHHHHHhcCCCc
Confidence            445666777776422 122    5  89999999999999999875    23  3567655554 444333332211   


Q ss_pred             -----c-----EEEEeeCCCCC-----------ccCHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675          248 -----I-----KLWRVPVDKEF-----------RADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQELGE  297 (438)
Q Consensus       248 -----i-----~v~~v~~~~~~-----------~~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I~~  297 (438)
                           .     .+..+|.....           .-+++.+++.+.     +++++|++......+|.+.|    +++|.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~  225 (420)
T TIGR00700       146 PYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLD  225 (420)
T ss_pred             ccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHH
Confidence                 1     23334432111           112567777663     45789999888888888766    899999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCC--CccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~--gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +|++||+++++|+++.|+...     |.   .+.+...  ..|+++  ..|.+.++..+|+++.+++
T Consensus       226 lc~~~gillI~DEV~tg~gr~-----g~---~~a~~~~~~~pDi~~--lsK~l~~G~pig~v~~~~~  282 (420)
T TIGR00700       226 WCREHGIVFIADEVQTGFART-----GA---MFACEHEGPEPDLIT--TAKSLADGLPLSGVTGRAE  282 (420)
T ss_pred             HHHHcCCEEEEEecccCCccc-----ch---hHHHhhcCCCCCEEE--eeccccCCcceEEEEecHH
Confidence            999999999999999887431     10   0111112  247666  4688665567888887643

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.92  E-value=1.6e-07  Score=95.96  Aligned_cols=233  Identities=14%  Similarity=0.119  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC-CCCCeEEecCCC-cCcHHHHHhhcC--
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-ITRPEMIIPVSA-HSAYDKAAQYFN--  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G-~~~~~Viv~~~~-h~s~~~a~~~~G--  247 (438)
                      ...++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+... +| ..+.+|+.-..+ |.....+...-|  
T Consensus        88 ~~~~lae~L~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~  160 (429)
T PRK06173         88 PAVELAQKLLEILPPSLNK----I--FFADSGSVAVEVAMKMALQYQQA-KGEVQRTKFATIRSGYHGDTWHAMSVCDPV  160 (429)
T ss_pred             HHHHHHHHHHhhCCCCcCE----E--EEeCCchHHHHHHHHHHHHHHHH-hCCCCCcEEEEECCCcCCcchhhhccCCCc
Confidence            3456667777776432233    5  89999999999999999976433 23 124567666554 443222221111  


Q ss_pred             ----------c-EEEEeeCCCC------CccCHHHHHHhhc---cCcEEEEEecC-CCCCccccC----HHHHHHHHHHc
Q 013675          248 ----------I-KLWRVPVDKE------FRADVKAIKKYIN---RNTVLIVGSAP-GFPHGIIDP----IQELGELALSH  302 (438)
Q Consensus       248 ----------i-~v~~v~~~~~------~~~d~~~Le~~I~---~~t~~vv~~~~-~~~tG~idd----i~~I~~la~~~  302 (438)
                                . .+..+|....      ..-+++++++.+.   +++.+|++... ....|.+.|    ++++.++|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~  240 (429)
T PRK06173        161 TGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY  240 (429)
T ss_pred             hhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc
Confidence                      0 1233443211      0124677888885   45788888874 666677643    88999999999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCc
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGL  379 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~  379 (438)
                      |+++++|+++.|+..     .|.   -+.....|  .|++++  .|.+.+. ..+|.++.+++ +.+..  . ....+..
T Consensus       241 g~llI~DEv~tG~Gr-----tG~---~~a~~~~gv~PDiv~~--gK~l~gG~~p~~a~~~~~~-i~~~~--~-~~~~~~~  306 (429)
T PRK06173        241 GVLLIFDEIATGFGR-----TGK---LFALEHAGVVPDIMCI--GKALTGGYLTLSATITTEA-IAQTI--C-SGEAKCF  306 (429)
T ss_pred             CCeEEecchhcCCCc-----CCc---chHHHhcCCCCCEEEe--ehhhhCCccccceEEecHH-HHHHH--h-cCCCCcc
Confidence            999999999876532     221   11112223  477774  5775444 24566666643 22110  0 0000000


Q ss_pred             cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       380 ~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..+.|..|.  ....++..++|+.+-++   +..++..++.++|.+.|+++
T Consensus       307 ~~~~T~~g~--p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~  352 (429)
T PRK06173        307 MHGPTFMAN--PLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPA  352 (429)
T ss_pred             ccCCCCCcC--HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHh
Confidence            011111111  12244556666665433   34667777888888888743

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=98.92  E-value=1.4e-07  Score=96.29  Aligned_cols=222  Identities=20%  Similarity=0.164  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc--
Q 013675          173 EAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI--  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi--  248 (438)
                      ..++.+.+++++..+ .+.    +  .|+++||||+..|++.+|.+    .|  +++|+.-..+ |....-+....|.  
T Consensus        85 ~~~la~~l~~~~p~~~~~~----~--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~s~t~~~~  152 (421)
T PRK06777         85 YVTLAERINALAPIDGPAK----T--AFFTTGAEAVENAVKIARAY----TG--RPGVIAFGGAFHGRTLLTMALTGKVA  152 (421)
T ss_pred             HHHHHHHHHHhCCCCCCce----E--EEeCCcHHHHHHHHHHHHHh----hC--CCeEEEEcCCcCCccHHHHhhcCCCc
Confidence            345666777776532 222    4  88999999999999999865    23  3567766554 4433333322221  


Q ss_pred             -----------EEEEeeCCCC-----CccCHHHHHHhhc-----cCcEEEEEecCCCCCccc-cC---HHHHHHHHHHcC
Q 013675          249 -----------KLWRVPVDKE-----FRADVKAIKKYIN-----RNTVLIVGSAPGFPHGII-DP---IQELGELALSHG  303 (438)
Q Consensus       249 -----------~v~~v~~~~~-----~~~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~i-dd---i~~I~~la~~~~  303 (438)
                                 .+..+|....     ..-+++++++.++     +++.+|++.......|.. .|   +++|.++|++||
T Consensus       153 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g  232 (421)
T PRK06777        153 PYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHG  232 (421)
T ss_pred             ccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence                       1223332211     1124677888775     347788888877777753 34   899999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV  381 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~  381 (438)
                      +++++|+++.|+..     .|.   .+.....+  .|+++  ..|.+.+...+|+++.++ ++.+....   ...     
T Consensus       233 ~llI~DEv~tg~gr-----~g~---~~~~~~~~~~pDiv~--~sK~l~~G~pigav~~~~-~i~~~~~~---~~~-----  293 (421)
T PRK06777        233 ILLIADEVQTGFAR-----TGK---LFAMEYYDVKPDLIT--MAKSLGGGMPISAVVGRA-EVMDAPAP---GGL-----  293 (421)
T ss_pred             CEEEEechhhCCcc-----CCc---hhhhhhcCCCCCEEe--eehhhcCCCceEEEEEcH-HHHhccCC---CCC-----
Confidence            99999999987643     111   11111123  47665  468855545688888764 33221100   000     


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..+..|. + ...++..++|+.+..   .+..++..++.+++.+.|+++
T Consensus       294 ~~T~~~~-p-~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l  337 (421)
T PRK06777        294 GGTYAGN-P-LAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKA  337 (421)
T ss_pred             CCCCCcC-H-HHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            1111111 1 112344445544422   456677778888888888764

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=98.91  E-value=1.9e-07  Score=96.24  Aligned_cols=171  Identities=22%  Similarity=0.195  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI-  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi-  248 (438)
                      +.+.++.+.+++++..+..+   .+  .++++||||+..|++.+|.+.    |  +++|+.-..+ |....-+...-|- 
T Consensus        97 ~~~~~la~~L~~~~p~~~~~---~v--~f~~sGseA~e~AlklAr~~t----g--r~~ii~~~~~yHG~t~~~ls~~~~~  165 (451)
T PRK06918         97 EPYIELAEKLAALAPGSFDK---KV--LFLNSGAEAVENAVKIARKYT----K--RQGIISFSRGFHGRTLMTMTMTSKV  165 (451)
T ss_pred             HHHHHHHHHHHHhCCCCCCC---EE--EEcCCcHHHHHHHHHHHHHHh----C--CCcEEEECCCcCccchhhhhhcCCC
Confidence            44566777888887543211   15  899999999999999999752    2  3567665554 4333333322110 


Q ss_pred             ------------EEEEeeCCC-----CCcc-------CHHHHHHhh----c-cCcEEEEEecCCCCCccccC----HHHH
Q 013675          249 ------------KLWRVPVDK-----EFRA-------DVKAIKKYI----N-RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       249 ------------~v~~v~~~~-----~~~~-------d~~~Le~~I----~-~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                                  .+..+|...     .+..       .++.+++.+    . +++.+|++...+...|.+.|    +++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l  245 (451)
T PRK06918        166 KPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEV  245 (451)
T ss_pred             ccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHH
Confidence                        133343321     1100       022344433    2 35677777776665676544    7899


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      .++|++||++++.|+++.|+..     .|.   .+.+...+  .|+++  ..|.+.+...+|+++.+++
T Consensus       246 ~~l~~~~gillI~DEV~tg~gr-----~g~---~~a~~~~~v~pDi~t--~sK~l~~G~pig~v~~~~~  304 (451)
T PRK06918        246 RNICSEHGILFVADEIQTGFAR-----TGK---YFAIEHFDVVPDLIT--VSKSLGAGVPISGVIGRKE  304 (451)
T ss_pred             HHHHHHcCCEEEEeccccCcCc-----cCc---eehhHhcCCCCCEEe--eehhhcCCCccEEEEEcHH
Confidence            9999999999999999988753     111   11112222  47554  4688665567899887643

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.91  E-value=5.1e-08  Score=99.66  Aligned_cols=224  Identities=19%  Similarity=0.209  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc----
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF----  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~----  246 (438)
                      ..+.++.+++++++.. .+.    +  .++++|++|+..|++.++.+    .|  +++|+....+|......+...    
T Consensus        90 ~~~~~la~~L~~~~~~-~~~----v--~~~~sGseA~e~Aik~a~~~----~g--~~~ii~~~~~yHG~t~~~~~~~~~~  156 (426)
T PRK00062         90 ELEVELAELVIELVPS-IEM----V--RMVNSGTEATMSAIRLARGY----TG--RDKIIKFEGCYHGHADSLLVKAGSG  156 (426)
T ss_pred             HHHHHHHHHHHHhCCC-CCE----E--EEecCHHHHHHHHHHHHHHH----hC--CCeEEEEcCccCCchhhhhhccCcc
Confidence            3445677777777632 223    5  89999999999999999865    22  367887777655543222111    


Q ss_pred             ----C-----cEEEEeeCC--CCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEE
Q 013675          247 ----N-----IKLWRVPVD--KEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHV  308 (438)
Q Consensus       247 ----G-----i~v~~v~~~--~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhV  308 (438)
                          +     ...+.++.+  .--.-|++++++.+.+   ++++|++.......|.+.|    +++|.++|++||+++++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~  236 (426)
T PRK00062        157 AATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIF  236 (426)
T ss_pred             ccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence                1     000001000  0001378999998853   6788888877777898887    99999999999999999


Q ss_pred             eccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCcc
Q 013675          309 DLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVA  386 (438)
Q Consensus       309 D~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~  386 (438)
                      |+++.|+-.   ...+      .....+  .|++  +..|.+.+....|+++.++ ++.+..-.     .+..+...+..
T Consensus       237 DEv~~G~r~---g~~~------~~~~~~~~pDi~--~~gK~l~~G~p~ga~~~~~-~i~~~~~~-----~~~~~~~~T~~  299 (426)
T PRK00062        237 DEVMTGFRV---ALGG------AQGYYGVTPDLT--TLGKIIGGGLPVGAFGGRR-EIMEQLAP-----LGPVYQAGTLS  299 (426)
T ss_pred             eechhcccc---CCcc------HHHHhCCCcchH--hhhhHhhCCCcceeeeEHH-HHHHhhcc-----CCCceecccCc
Confidence            999987622   0000      011112  2543  3458855444467766653 33221100     01111111111


Q ss_pred             CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      +..  ...++..++|+.+..+   +..++..++.+++++.|++
T Consensus       300 ~~p--~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~  337 (426)
T PRK00062        300 GNP--LAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKE  337 (426)
T ss_pred             CCH--HHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHH
Confidence            111  1133455566555333   4556666667777666653

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.91  E-value=2.1e-07  Score=95.87  Aligned_cols=171  Identities=22%  Similarity=0.261  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhcC-
Q 013675          171 RFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYFN-  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~G-  247 (438)
                      +.+.++.+.+++++.... ..   .+ -.++++||||+..|++.+|.+    .|  +++|+.-..+|.... -+...-| 
T Consensus       101 ~~~~~lAe~L~~~~p~~~~~~---~~-~f~~~SGsEAve~AlklAr~~----tg--r~~Ii~~~~~yHG~t~~als~t~~  170 (459)
T PRK06931        101 PLKDAFSEYLLSLLPGQGKEY---CL-QFTGPSGADAVEAAIKLAKTY----TG--RSNVISFSGGYHGMTHGALAVTGN  170 (459)
T ss_pred             HHHHHHHHHHHHhCCCccccc---eE-EEeCCCcHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCccHHHHhhcCC
Confidence            455667778888875322 11   01 145689999999999999975    33  356776665544433 3332211 


Q ss_pred             -----------cEEEEeeCCCCCc--------cCHHHH----HHhhc------cCcEEEEEecCCCCCccccC----HHH
Q 013675          248 -----------IKLWRVPVDKEFR--------ADVKAI----KKYIN------RNTVLIVGSAPGFPHGIIDP----IQE  294 (438)
Q Consensus       248 -----------i~v~~v~~~~~~~--------~d~~~L----e~~I~------~~t~~vv~~~~~~~tG~idd----i~~  294 (438)
                                 -.+..+|.....+        -+.+++    ++.++      +++.+|++.......|.+.|    +++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~  250 (459)
T PRK06931        171 LSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQK  250 (459)
T ss_pred             cccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHH
Confidence                       1234444332111        123333    33333      24788888877776777654    899


Q ss_pred             HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEec
Q 013675          295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRN  361 (438)
Q Consensus       295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~  361 (438)
                      +.++|++||+++++|+++.||..     .|.   .+.+...|  .|+++++  |.+.++..+|+++.++
T Consensus       251 lr~lc~~~g~LlI~DEV~tGfGR-----tG~---~~a~~~~gv~PDivt~g--K~l~gG~Pi~av~~~~  309 (459)
T PRK06931        251 IREVTQKHGILLIVDEVQAGFAR-----TGK---MFAFEHAGIEPDIIVMS--KAVGGGLPLAVLGIKK  309 (459)
T ss_pred             HHHHHHHcCCEEEEecchhcCCc-----Cch---HHHhhhcCCCCCEEEec--ccccCCcceeeeeeHH
Confidence            99999999999999999988743     121   12222233  3888885  7755556677777664

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=98.90  E-value=6.7e-08  Score=93.20  Aligned_cols=221  Identities=15%  Similarity=0.105  Sum_probs=139.6

Q ss_pred             HHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675          176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV  255 (438)
Q Consensus       176 ~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~  255 (438)
                      +.+.+++|-+-+..        ++-++.--||...+..+...   -+|   -+|+-.+..|.|.....+.-+++-....-
T Consensus       221 LE~eLA~LHqK~aA--------LlFsSCfVANDstLftLak~---lpg---cei~SD~gNHASMI~GIrns~v~K~IFrH  286 (570)
T KOG1360|consen  221 LEAELADLHQKEAA--------LLFSSCFVANDSTLFTLAKK---LPG---CEIFSDEGNHASMIQGIRNSRVPKHIFRH  286 (570)
T ss_pred             HHHHHHHHhcCcce--------eeeeeeeeccchHHHHHHHH---CCC---cEEeccccchHHHHHHhhhcCCcceeecc
Confidence            33457887765543        33344445555555444321   255   67777777899988877777765444433


Q ss_pred             CCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          256 DKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       256 ~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      +     |+++|++++..    -|+.|.+....+..|.+.|+++|++++++||....+|++++-++.   -..|..+-+-|
T Consensus       287 N-----D~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlY---G~rGaGvgerd  358 (570)
T KOG1360|consen  287 N-----DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLY---GPRGAGVGERD  358 (570)
T ss_pred             C-----CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccc---cCCCCCccccC
Confidence            3     89999999864    378999999999999999999999999999999999999754433   11221122333


Q ss_pred             cCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHHH
Q 013675          332 FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYL  410 (438)
Q Consensus       332 ~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~~  410 (438)
                      --...+|+|+....|. ||--| |++... ..+.....    .|..|..    +..|-|-..++++..+.+.+. .+| +
T Consensus       359 Gvm~kvDiIsGTLgKa-fGcVG-GYIAat-~~LvDmiR----SyAaGFI----FTTSLPP~vl~GAleaVr~lk~~eg-~  426 (570)
T KOG1360|consen  359 GVMHKVDIISGTLGKA-FGCVG-GYIAAT-RKLVDMIR----SYAAGFI----FTTSLPPMVLAGALEAVRILKSEEG-R  426 (570)
T ss_pred             Ccchhhhhcccchhhh-ccccc-ceehhh-hhHHHHHH----HhcCceE----EecCCChHHHHhHHHHHHHHhhhhh-H
Confidence            3344469999999999 55544 554443 22222110    1111111    112334445667778887774 344 4


Q ss_pred             HHHHHHHHHHHHHHHHhhcC
Q 013675          411 ENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       411 ~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...+...++.+++++.|.++
T Consensus       427 ~lR~~hqrnv~~~kq~l~~~  446 (570)
T KOG1360|consen  427 VLRRQHQRNVKYVKQLLMEL  446 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            44555667788888888775

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.89  E-value=3.3e-08  Score=92.29  Aligned_cols=238  Identities=17%  Similarity=0.161  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC----CCcCcHHHHHhhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV----SAHSAYDKAAQYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~----~~h~s~~~a~~~~Gi  248 (438)
                      .+-+...++.+.|+...+    +  .+.++-|.-+...+.+...     +-.++-+|+...    +.|+++...++..|+
T Consensus       113 De~il~l~~~iVGA~e~E----v--avmNsLTvNlh~Ll~sFyK-----PTekR~KILlE~kaFPSDhYAiesQ~~lhG~  181 (465)
T KOG3846|consen  113 DEPILPLLAPIVGAQENE----V--AVMNSLTVNLHSLLISFYK-----PTEKRFKILLEKKAFPSDHYAIESQCKLHGI  181 (465)
T ss_pred             chhhhhhhhhhccCCchh----h--hhHhhhhhHHHHHHHHhcC-----CcchhhhhhhccCCCCchHHHHHhhhhhcCC
Confidence            445667788999998877    4  4555555444444444331     222234566543    457789999999998


Q ss_pred             E----EEEeeCCC-CCccCHHHHHHhhccC---cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          249 K----LWRVPVDK-EFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       249 ~----v~~v~~~~-~~~~d~~~Le~~I~~~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      .    .+.+...+ ...+..+++-..|..+   .++|+++..++.||...|+.+|...-+..|+.+-.|-|++       
T Consensus       182 ~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHA-------  254 (465)
T KOG3846|consen  182 SPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHA-------  254 (465)
T ss_pred             ChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhh-------
Confidence            5    44454444 4457788888888754   6788999999999999999999988888899999998864       


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCcc-----------CCCCccCC
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLY-----------VSPTVAGS  388 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~-----------~~~~~~gs  388 (438)
                        .|. + |+....+|||+.++.++||++++ .|+|.+.+.++. .+.+......|.|...           ..+...|-
T Consensus       255 --vgN-V-pL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh-~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~Gf  329 (465)
T KOG3846|consen  255 --VGN-V-PLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKH-TKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGF  329 (465)
T ss_pred             --hcC-C-ceEEeecCCceEEEeeecccccCCCccceeeeehhh-hcchhhHHhhhccCCcchhhhhccccccCcccccc
Confidence              333 3 46778899999999999999755 457777776553 3333344445655432           12233444


Q ss_pred             CC----CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          389 RP----GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       389 r~----~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      |-    -..++++..+|+.+.+-.+.+..++..-++.|+...++...|.
T Consensus       330 RiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~  378 (465)
T KOG3846|consen  330 RISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGY  378 (465)
T ss_pred             ccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhccc
Confidence            42    2346788888988888889999999999999999888765443

>PRK07046 aminotransferase; Validated

Probab=98.89  E-value=3.2e-07  Score=94.27  Aligned_cols=160  Identities=16%  Similarity=0.117  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH-HHHHhh----
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY-DKAAQY----  245 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~-~~a~~~----  245 (438)
                      +.+.++.+.++++++.+  .    +  .|+++||||+..|++.+|.+    .|  +++|+.-..+|..+ ......    
T Consensus       115 ~~~~~lAe~l~~~~~~~--~----v--~F~nSGtEA~e~AlrlAR~~----TG--r~~ii~~~g~YHG~~d~~l~~~~~~  180 (453)
T PRK07046        115 EDAAWVGEELARRFGLP--Y----W--QVATTATDANRFVLRWARAV----TG--RPKILVFNGCYHGTVDDVFVDLVDG  180 (453)
T ss_pred             HHHHHHHHHHHHHhCCC--E----E--EEECCHHHHHHHHHHHHHHh----hC--CCEEEEECCCCCCCcHHhHhhccCC
Confidence            55677788888888543  2    5  89999999999999999975    23  36677655544333 211111    


Q ss_pred             --------cCc------EEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeE
Q 013675          246 --------FNI------KLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCL  306 (438)
Q Consensus       246 --------~Gi------~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~l  306 (438)
                              .|+      .+..+|.     -|++++++.+. ++..+|++.......|.+.|    ++++.++|++||+.+
T Consensus       181 ~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~ll  255 (453)
T PRK07046        181 RPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLL  255 (453)
T ss_pred             CCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEE
Confidence                    011      1122222     27899999985 46788888887777787765    799999999999999


Q ss_pred             EEecccc---chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          307 HVDLCLG---GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       307 hVD~a~g---g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      ++|+++.   |+.- +.+.       ++   ...|.+++  -|.+.++..+|+++.+++
T Consensus       256 I~DEV~tfr~g~Gg-~~~~-------~g---v~PDi~t~--gK~lggG~Pi~av~g~~~  301 (453)
T PRK07046        256 VIDETHTISSGPGG-YTRA-------HG---LEPDFLVV--GKPIAGGVPCAVYGFSAE  301 (453)
T ss_pred             EEEccccCccCCcc-hhHH-------hC---CCccceee--hhhhcCCCcceeeeehHH
Confidence            9999975   2111 0010       11   11388775  587655567888777654

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.86  E-value=1.8e-07  Score=90.96  Aligned_cols=213  Identities=20%  Similarity=0.153  Sum_probs=131.7

Q ss_pred             eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCcHHHHHhhcCcEEEEeeCCC---C----CccCHHHHHHh
Q 013675          198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSAYDKAAQYFNIKLWRVPVDK---E----FRADVKAIKKY  269 (438)
Q Consensus       198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s~~~a~~~~Gi~v~~v~~~~---~----~~~d~~~Le~~  269 (438)
                      .|+++|||||..|++.+|.....+.+..+-.+|.- ...|..-..++...+..-...|.++   +    ---|..++++.
T Consensus       120 ff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~  199 (433)
T KOG1401|consen  120 FFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKL  199 (433)
T ss_pred             EEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHH
Confidence            89999999999999999976554433223335554 4456555555554343333333221   1    12379999999


Q ss_pred             hccCc---EEEEEecCCCCCcccc--C--HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEE
Q 013675          270 INRNT---VLIVGSAPGFPHGIID--P--IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSI  340 (438)
Q Consensus       270 I~~~t---~~vv~~~~~~~tG~id--d--i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsi  340 (438)
                      ++...   .+|++...+-.-|.+.  |  +..|.++|+++|++++-|+++.|+..     .|.   .+.....++  |+.
T Consensus       200 ~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR-----~g~---~~a~e~~~~~PDI~  271 (433)
T KOG1401|consen  200 FESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGR-----LGY---GWAQEYFGVTPDIT  271 (433)
T ss_pred             HHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccc-----cch---HHHHHHhCcCCcce
Confidence            98754   7888888887666653  3  78999999999999999999987653     221   223333344  777


Q ss_pred             EeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH---HHHHHHHcH-HHHHHHHHHH
Q 013675          341 SVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA---WAALMSLGQ-EGYLENTKAI  416 (438)
Q Consensus       341 s~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~---~aal~~~g~-~g~~~~~~~~  416 (438)
                      ++.  |.+.++...|+..+|++-.....        ++   .+...|+..++...+|   ..+|+.+.+ +.+.++.+.-
T Consensus       272 t~a--K~L~gGlPigA~~v~~kV~~~i~--------~~---~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~  338 (433)
T KOG1401|consen  272 TVA--KPLGGGLPIGATGVRDKVAEMIS--------PG---DHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIG  338 (433)
T ss_pred             eeh--hhccCCceeEEEeehHHHHhhcC--------CC---CccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHH
Confidence            765  88777788899888876322111        11   1122233322222233   344555544 4456666666


Q ss_pred             HHHHHHHHHHhhcCC
Q 013675          417 MEVSESIQKGLVLFP  431 (438)
Q Consensus       417 ~~~a~~l~~~L~~~~  431 (438)
                      ..+++.+.+.+.+-|
T Consensus       339 k~L~~~l~e~~~~~~  353 (433)
T KOG1401|consen  339 KELRKLLDEYLKKTP  353 (433)
T ss_pred             HHHHHHHHHHhccCC
Confidence            778888888877644

>PRK06149 hypothetical protein; Provisional

Probab=98.83  E-value=4.4e-07  Score=101.68  Aligned_cols=224  Identities=21%  Similarity=0.178  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhh----
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQY----  245 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~----  245 (438)
                      +...++.+.+++++..+.+.    +  .++++||||+..|++.+|.+    .|  +.+||....+ |....-+...    
T Consensus       624 ~~~~elae~L~~~~p~~~~~----v--~f~~SGsEA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~ga~~~s~~~  691 (972)
T PRK06149        624 AAVAEFSERLAALAPDGLDT----V--FLVNSGSEANDLAIRLAWAA----SG--RRDVVSVLEAYHGWTVATDAVSTSI  691 (972)
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEeCCchHHHHHHHHHHHHh----cC--CCeEEEEeCCCCCcChhHhhhcCCc
Confidence            34556667788887332222    4  89999999999999999865    23  3456665554 4322111111    


Q ss_pred             ------cCc---EEEEeeCCCC----Cc-cC-----HHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHHH
Q 013675          246 ------FNI---KLWRVPVDKE----FR-AD-----VKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       246 ------~Gi---~v~~v~~~~~----~~-~d-----~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                            .+-   .+..++....    +. .|     .+++++.+.      +++++|++.......|.+.+    +++|.
T Consensus       692 ~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~  771 (972)
T PRK06149        692 ADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVY  771 (972)
T ss_pred             cccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHH
Confidence                  000   1233433221    11 12     244444442      35778888887777788877    99999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE  374 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~  374 (438)
                      ++|++||+.+++|+++.||..     .|..  -+.+...|  .|++++  .|.+.++..+|+++.+++ +.+. +. .  
T Consensus       772 ~lc~~~g~llI~DEV~tGfGR-----tG~~--~~a~e~~gv~PDivt~--gK~lg~G~Pl~av~~~~~-i~~~-~~-~--  837 (972)
T PRK06149        772 AAVRARGGVCIADEVQVGYGR-----LGHY--FWGFEQQGVVPDIITM--AKGMGNGHPLGAVITRRE-IAEA-LE-A--  837 (972)
T ss_pred             HHHHHcCCEEEEEeehhcCCc-----cCcc--chhhhhcCCCCCEEEe--cccccCCeeeEEEEEcHH-HHhh-hc-c--
Confidence            999999999999999977643     2210  01222233  488876  477655566788888754 2211 00 0  


Q ss_pred             cCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          375 WSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                        .+.+.     ++-.+..  .++..++|+.+.++   +..++..++.++|++.|+++
T Consensus       838 --~~~~~-----sT~~gnP~~~aaala~L~~i~~e---~l~~~~~~~G~~l~~~L~~l  885 (972)
T PRK06149        838 --EGYFF-----SSTGGSPVSCRIGMAVLDVLREE---KLQENARRVGDHLKARLEAL  885 (972)
T ss_pred             --CCccc-----CCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence              01110     1111211  23344445444333   45566767777777777653

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.81  E-value=8.5e-08  Score=91.48  Aligned_cols=170  Identities=15%  Similarity=0.160  Sum_probs=112.1

Q ss_pred             HHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH-HhhcCcEEEEee
Q 013675          176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-AQYFNIKLWRVP  254 (438)
Q Consensus       176 ~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a-~~~~Gi~v~~v~  254 (438)
                      +.+.+.+.||.+..        +-|.-|..|-....-.++......+|   .++++++..|+...++ .+..|..++-++
T Consensus        84 L~~avkdifGfq~~--------iPthQGRgAE~Il~~i~ik~~~~~pg---~~~~~~sN~~FdTTr~h~~~ng~~~~n~~  152 (471)
T COG3033          84 LADAVKDIFGFQYT--------IPTHQGRGAENILIPILIKKGEQEPG---SKMVAFSNYHFDTTRGHIQINGATPRNVY  152 (471)
T ss_pred             HHHHHHHhcCceee--------eeccCCccHHHHHHHHHhhhccccCC---ccccccccceecchhHHHHhcCCcccccc
Confidence            34456777787542        45655555544444444433233455   5778888888876553 455577777777


Q ss_pred             CCC----------CCccCHHHHHHhhcc----CcEEEEEecCCCCCc----cccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675          255 VDK----------EFRADVKAIKKYINR----NTVLIVGSAPGFPHG----IIDPIQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       255 ~~~----------~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG----~iddi~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      +++          .|.+|++.|++.|++    |...|+++--+|..|    .+.+++++.++|++|+|+++.|+|-    
T Consensus       153 ~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~R----  228 (471)
T COG3033         153 VDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAAR----  228 (471)
T ss_pred             ccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhh----
Confidence            653          366999999999985    455565555555444    3477999999999999999999984    


Q ss_pred             hhhhhhcCCCCC--CCccCCC-----------CccEEEeCCCCCCCCCCCcEEEEEecccc
Q 013675          317 LPFAKKLGYPIP--PFDFSVQ-----------GVTSISVDVHKYGLAPKGTSVVLYRNREI  364 (438)
Q Consensus       317 ~pf~~~~g~~~p--~~~~~~~-----------gvdsis~s~hK~~~~p~g~g~l~~r~~~~  364 (438)
                        |.+.+-+ +.  +-..+.+           -+|-+++|..|-+.++.| |+++++|+..
T Consensus       229 --faENaYF-Ik~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~  285 (471)
T COG3033         229 --FAENAYF-IKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKDDSF  285 (471)
T ss_pred             --hhhhhhh-hhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecCccH
Confidence              2222211 10  1111222           249999999999999997 8999998853

>PRK06148 hypothetical protein; Provisional

Probab=98.81  E-value=3.2e-07  Score=102.91  Aligned_cols=224  Identities=19%  Similarity=0.174  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhc---
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYF---  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~---  246 (438)
                      +.+.++.+.+++++..+.+.    +  .|+++||||+..|++.+|.+    .|  +++||....+ |.....+...-   
T Consensus       663 ~~~~~lAe~L~~~~p~~~~~----v--~f~nSGsEA~e~AlklAr~~----tG--r~~ii~~~~~YHG~t~~a~s~s~~~  730 (1013)
T PRK06148        663 DAIVAYAERLTATLPDGLTV----A--FFVNSGSEANSLALRLARAH----TG--QRDAIVLDHAYHGTTTELIDLSPYK  730 (1013)
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHh----cC--CCeEEEEcCCccCCCcchhhcCchh
Confidence            34556777788877533232    4  89999999999999999975    33  3567665554 43322222111   


Q ss_pred             -----C----cEEEEeeCCCC----Cc-cC-------HHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHH
Q 013675          247 -----N----IKLWRVPVDKE----FR-AD-------VKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       247 -----G----i~v~~v~~~~~----~~-~d-------~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                           +    -.+..++....    +. -|       .+++++.+.      +++++|++......-|.+.|    ++++
T Consensus       731 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~l  810 (1013)
T PRK06148        731 FNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREV  810 (1013)
T ss_pred             hcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHH
Confidence                 1    01222222110    11 11       244555553      35788888887777787766    8999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhccc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      .++|++||+.++.|+++.||..     .|..  -+.+...|+  |++++  -|.+.++..+|.++.+++ +... +.   
T Consensus       811 r~lc~~~g~llI~DEVqtGfGR-----tG~~--~~a~e~~gv~PDivt~--gK~lggG~Plgav~~~~e-i~~~-~~---  876 (1013)
T PRK06148        811 YAMVRAAGGVCIADEVQVGFGR-----VGSH--WWAFETQGVVPDIVTM--GKPIGNGHPMGAVVTTRE-IADS-FD---  876 (1013)
T ss_pred             HHHHHHhCCEEEEEecccCCCC-----CCCc--chhhhhcCCCcceeee--cccccCCcceEEEEEcHH-HHhh-cc---
Confidence            9999999999999999987743     1210  122233344  88887  487666677888888743 3211 00   


Q ss_pred             ccCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          374 EWSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       374 ~~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                        .+..+     .+|-.|..  .++..++|+.+.++   +..++..++.++|++.|+++
T Consensus       877 --~g~~~-----~~Tf~gnpla~aaa~a~L~~i~~e---~l~~~~~~~G~~l~~~L~~l  925 (1013)
T PRK06148        877 --NGMEY-----FNTFGGNPVSCAIGLAVLDIIEDE---DLQRNALEIGNYLLAGLREL  925 (1013)
T ss_pred             --CCCcc-----ccCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHH
Confidence              11101     11111221  23344445444333   45566777777877777653

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.80  E-value=1.3e-06  Score=89.76  Aligned_cols=142  Identities=15%  Similarity=0.128  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh-c--------------------CCCCC
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK-R--------------------GITRP  227 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~-~--------------------G~~~~  227 (438)
                      ..++.+.+.+.+++++.-+.+.    +  .|+++||||+..|++.+|.+.... +                    |-++.
T Consensus       103 ~~~la~~l~~~l~~~~p~~~~~----v--~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~  176 (464)
T TIGR00699       103 SKDWAKILKEGILKVAPKGQDQ----V--WTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDL  176 (464)
T ss_pred             HHHHHHHHHHhHHhhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCC
Confidence            3445555555455665422233    5  899999999999999998764321 1                    11123


Q ss_pred             eEEecCCC-cCcHHHHHhhcCc-----------EEEEeeCCC-C-------------CccCHHHHHHhhc---cCcEEEE
Q 013675          228 EMIIPVSA-HSAYDKAAQYFNI-----------KLWRVPVDK-E-------------FRADVKAIKKYIN---RNTVLIV  278 (438)
Q Consensus       228 ~Viv~~~~-h~s~~~a~~~~Gi-----------~v~~v~~~~-~-------------~~~d~~~Le~~I~---~~t~~vv  278 (438)
                      +||.-..+ |-...-+....|-           ....+|... .             ..-++++++++++   +++.+|+
T Consensus       177 ~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI  256 (464)
T TIGR00699       177 SILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAII  256 (464)
T ss_pred             EEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            67766555 4444433333221           122233221 0             0124667788885   3578999


Q ss_pred             EecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchh
Q 013675          279 GSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       279 ~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      +.......|.+.|    +++|.++|++||+.+++|+++.|+.
T Consensus       257 ~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfG  298 (464)
T TIGR00699       257 VEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVG  298 (464)
T ss_pred             EeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCC
Confidence            9888887888877    9999999999999999999988764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.79  E-value=1.1e-06  Score=89.70  Aligned_cols=232  Identities=16%  Similarity=0.160  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc--
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI--  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi--  248 (438)
                      ..++.+.++++++.+-+.    +  .++.+||+|+..|++.++.+... +|. .+.+|+.-..+ |....-+....|-  
T Consensus        90 ~~~la~~l~~~~~~~~~~----v--~f~~sGseA~e~AlklAr~~~~~-~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~  162 (427)
T TIGR00508        90 AIELCQKLVKMTPNALDC----V--FLADSGSVAVEVALKMALQYWQA-KGEKNRQKFLTIRSGYHGDTFGAMSVCDPEN  162 (427)
T ss_pred             HHHHHHHHHhhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHh-hCCCCccEEEEEcCCcCCccHhhhcccCCcc
Confidence            345666777776543233    5  89999999999999999976533 232 13566665554 4433222222121  


Q ss_pred             -----------EEEEeeCCCC-C-----ccCHHHHHHhhc---cCcEEEEEecC-CCCCccc----cCHHHHHHHHHHcC
Q 013675          249 -----------KLWRVPVDKE-F-----RADVKAIKKYIN---RNTVLIVGSAP-GFPHGII----DPIQELGELALSHG  303 (438)
Q Consensus       249 -----------~v~~v~~~~~-~-----~~d~~~Le~~I~---~~t~~vv~~~~-~~~tG~i----ddi~~I~~la~~~~  303 (438)
                                 ....+|.... +     .-|++++++.+.   ++.++|++... +...|.+    .++++|.++|++||
T Consensus       163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~  242 (427)
T TIGR00508       163 SMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYD  242 (427)
T ss_pred             cccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence                       1112222111 1     125678888875   34667777764 4444543    45899999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCC--CccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcccccCCCcc
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~--gvdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      +.+++|+++.|+..     .|.   .+.....  ..|++++  .|.+.+.. .++.++.+++ +.+. +....  .+...
T Consensus       243 ~llI~DEv~tG~Gr-----~G~---~~~~~~~~v~pDi~~~--gK~l~gG~~p~~a~~~~~~-~~~~-~~~~~--~~~~~  308 (427)
T TIGR00508       243 ILLIADEIATGFGR-----TGK---LFACEHAGVVPDILCV--GKALTGGYMTLSATVTTDK-VAQT-ISSGE--AGCFM  308 (427)
T ss_pred             CEEEEeccccCCCc-----CCc---cchhhhcCCCCCEEEe--chhhhcCcccceEEEEcHH-HHHH-HhcCC--CCccc
Confidence            99999999876533     111   1111112  2477775  68754442 4566666543 2211 00000  00000


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...+..|.  ....+++.++++.+..+   +..++..++.++|++.|+++
T Consensus       309 ~~~T~~g~--p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l  353 (427)
T TIGR00508       309 HGPTFMGN--PLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPL  353 (427)
T ss_pred             cCCCCCcC--HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHh
Confidence            11111121  11234555666655333   44677778888888888765

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.76  E-value=1.3e-07  Score=91.24  Aligned_cols=221  Identities=18%  Similarity=0.157  Sum_probs=129.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCcHHHHHhhcCcEEEEe
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      ++.+.+++++-.+-..    +  .|+++|||||.+|++.+|.+...      -++|.- ...|....-++..-|+...+-
T Consensus        96 ~~Ae~L~s~~P~~l~~----v--fF~nsGsEANelal~mar~Yt~~------~diIa~r~~YHG~t~~t~glt~~~~~k~  163 (442)
T KOG1404|consen   96 DLAEALVSKLPGDLKV----V--FFVNSGSEANELALKMARLYTGN------LDIIARRNSYHGNTLYTLGLTGLSPWKQ  163 (442)
T ss_pred             HHHHHHHHhCCCCceE----E--EEecCCchHHHHHHHHHHHhcCC------ceEEEeeccccCCchhhcccccCCcccc
Confidence            3444566666554442    4  89999999999999999976432      245544 444555444444444432222


Q ss_pred             eC-------------CC-C--Cc---------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHHHHH
Q 013675          254 PV-------------DK-E--FR---------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGELAL  300 (438)
Q Consensus       254 ~~-------------~~-~--~~---------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~la~  300 (438)
                      +.             |+ .  +.         --.++++..|.    +...++++......-|.+.+    +++..++|+
T Consensus       164 ~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~  243 (442)
T KOG1404|consen  164 NFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVR  243 (442)
T ss_pred             cCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHH
Confidence            11             11 0  00         01134444443    23578888888887888876    889999999


Q ss_pred             HcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC
Q 013675          301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG  378 (438)
Q Consensus       301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~  378 (438)
                      ++|..++.|+++.||..     .|.   -+.|...++  |++++.  |.+......|.+++.. ++.........  .  
T Consensus       244 k~Ggl~IaDEVqtGfGR-----tG~---~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~-EIa~v~~~~~~--~--  308 (442)
T KOG1404|consen  244 KRGGLFIADEVQTGFGR-----TGH---MWGFESHGVVPDIVTMA--KGIGNGFPLGAVVTTP-EIADVLNQKSS--H--  308 (442)
T ss_pred             HcCCEEEehhhhhcccc-----ccc---cccccccCCCccHHHHH--hhccCCCcceeeecCH-HHHHHHHhccc--c--
Confidence            99999999999998764     343   344555555  777665  7765557778877764 33321111100  0  


Q ss_pred             ccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          379 LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       379 ~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                          ....|..|-    ++.+++..+..-.-+++.++..+...||.+.|.++
T Consensus       309 ----fnTyggnP~----a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l  352 (442)
T KOG1404|consen  309 ----FNTYGGNPV----ACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAAL  352 (442)
T ss_pred             ----ccccCCCch----hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                011112221    22333333333333566778888899999998765

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.73  E-value=8.7e-07  Score=90.68  Aligned_cols=221  Identities=13%  Similarity=0.087  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCcHHHHHh-----h
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSAYDKAAQ-----Y  245 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s~~~a~~-----~  245 (438)
                      .+.++.+.+++++... +.    +  .|+++||||+..|++.+|.+    .|  +.+|+.. ...+.++.....     .
T Consensus        89 ~~~~la~~l~~~~p~~-~~----v--~f~~sGseA~e~AlklAr~~----tg--r~~i~~~~~~~~h~~~~~~~g~~~~~  155 (431)
T PRK06209         89 IELDAAESFLELIDGA-DM----V--KFCKNGSDATSAAVRLARAY----TG--RDLVARCADHPFFSTDDWFIGTTPMS  155 (431)
T ss_pred             HHHHHHHHHHHhCCcc-ce----E--EEecCHHHHHHHHHHHHHHH----hC--CCeEEEeccCccccccccccccCCCC
Confidence            3446677788876421 22    5  89999999999999999975    23  2456544 122111111000     0


Q ss_pred             cCcE------EEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675          246 FNIK------LWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       246 ~Gi~------v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      .|..      +..++     .-|+++++++++.   ++.+|++.......+..+.+++|.++|++||+.+++|+++.|+.
T Consensus       156 ~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~  230 (431)
T PRK06209        156 AGIPASVSALTVTFR-----YNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFR  230 (431)
T ss_pred             CCCChhHhccccccC-----CCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCC
Confidence            0110      11111     1278999998853   46677665543322223348999999999999999999987764


Q ss_pred             hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc-chhcccccCCCccCCCCccC-CCCC--c
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGLYVSPTVAG-SRPG--G  392 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~-~~~~~~~~~g~~~~~~~~~g-sr~~--~  392 (438)
                      .-   ..|. ...++.   ..|++++  .|.+.+....|+++.+++ +... .+.. .. ...    ....+ +-.+  .
T Consensus       231 ~~---~~g~-~~~~gv---~PDi~t~--gK~lggG~p~~av~~~~~-i~~~~~~~~-~~-~~~----~~~~~~T~~~np~  294 (431)
T PRK06209        231 WH---MRGA-QKLYGI---VPDLSCF--GKALGNGFAVSALAGKRE-YMELGGLEH-TD-RER----VFLLSTTHGAETH  294 (431)
T ss_pred             cC---cchh-hHHhCC---Ccceeee--hhhhcCCcccEEEEEHHH-HHhhhcccc-cC-CCC----ceeeccCCCCCHH
Confidence            31   0011 000111   2376555  587655455677777643 3221 0000 00 000    01111 2222  2


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      .+++..++|+.+.+++   ..++..++.+++++.|++
T Consensus       295 ~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~  328 (431)
T PRK06209        295 ALAAAIATMAIYRDED---VIERLHEQGAKLAAGVNE  328 (431)
T ss_pred             HHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHH
Confidence            3556667777664443   455555566666666543

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.69  E-value=1e-06  Score=90.45  Aligned_cols=139  Identities=18%  Similarity=0.161  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH---hcCC---CCCeEEecCCC-cCcHHHHHhh
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRGI---TRPEMIIPVSA-HSAYDKAAQY  245 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G~---~~~~Viv~~~~-h~s~~~a~~~  245 (438)
                      ..++.+.++++.+-+.-+   .+  .|+++||||+..|++.+|.+...   .+|.   .+.+|+.-..+ |....-+...
T Consensus        94 ~~~la~~l~~~~~p~~~~---~v--~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~  168 (443)
T PRK08297         94 MARFVDTFARVLGDPELP---HL--FFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSL  168 (443)
T ss_pred             HHHHHHHHHhhcCCCCCC---EE--EEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhh
Confidence            344555666665311111   25  89999999999999999876421   1343   24567766554 4333333322


Q ss_pred             cCcE-----------EEEeeCCC-C----C----------ccCHHHHHHhhc---cCcEEEEEecCCCCCcccc----CH
Q 013675          246 FNIK-----------LWRVPVDK-E----F----------RADVKAIKKYIN---RNTVLIVGSAPGFPHGIID----PI  292 (438)
Q Consensus       246 ~Gi~-----------v~~v~~~~-~----~----------~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~id----di  292 (438)
                      -|..           ...+|... .    .          .-|++++++.+.   +++.+|++......-|.+.    -+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl  248 (443)
T PRK08297        169 TNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFF  248 (443)
T ss_pred             cCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHH
Confidence            2210           00111110 0    0          013466677775   4688999888877778763    38


Q ss_pred             HHHHHHHHHcCCeEEEeccccchh
Q 013675          293 QELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       293 ~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      ++|.++|++||+++++|+++.||.
T Consensus       249 ~~lr~lc~~~g~llI~DEV~tGfG  272 (443)
T PRK08297        249 AAMRELCDEHDALLIFDEVQTGVG  272 (443)
T ss_pred             HHHHHHHHHcCCEEEEechhhccC
Confidence            999999999999999999998764

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.67  E-value=6.5e-07  Score=86.65  Aligned_cols=220  Identities=16%  Similarity=0.198  Sum_probs=139.2

Q ss_pred             cceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC-C-CCccCHHHHHHhhcc
Q 013675          195 VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD-K-EFRADVKAIKKYINR  272 (438)
Q Consensus       195 v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~-~-~~~~d~~~Le~~I~~  272 (438)
                      +.++-|.|||.|+..+..-+.....      +..|.+|+++.+.........|+++...|.- . +..+|.+.+-..++.
T Consensus        95 v~t~Qt~GGTGAL~~~A~fl~~~~~------~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~  168 (396)
T COG1448          95 VATVQTLGGTGALRVAADFLARFFP------DATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKT  168 (396)
T ss_pred             HhheecCCcchHHHHHHHHHHHhCC------CceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHh
Confidence            5668899999999998887664321      1469999999999999999999999999973 3 666999999888763


Q ss_pred             ---CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc-cCCCCc-cEEEeCC
Q 013675          273 ---NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD-FSVQGV-TSISVDV  344 (438)
Q Consensus       273 ---~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~-~~~~gv-dsis~s~  344 (438)
                         +..++.-.+.+||||.-..   .++|.++.++.+..-++|-||-||.--.-+.. +   .++ +...+. -+++.|.
T Consensus       169 a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa-~---~lR~~a~~~~~~lva~S~  244 (396)
T COG1448         169 APEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDA-Y---ALRLFAEVGPELLVASSF  244 (396)
T ss_pred             CCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHH-H---HHHHHHHhCCcEEEEehh
Confidence               5566666777899997644   67899999999999999999977653100000 0   000 011122 4677888


Q ss_pred             CCCCCCCCC--cEEEEE--ecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH---HHHHHcHHHHHHHHHHHH
Q 013675          345 HKYGLAPKG--TSVVLY--RNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA---ALMSLGQEGYLENTKAIM  417 (438)
Q Consensus       345 hK~~~~p~g--~g~l~~--r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a---al~~~g~~g~~~~~~~~~  417 (438)
                      .|. ++-+|  .|.+.+  .+++...........---+.|-.|.-.    |+.+++.-+   .|+..-+..+.++.+++.
T Consensus       245 SKn-fgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~----Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~  319 (396)
T COG1448         245 SKN-FGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAH----GAAVVATILNNPELRAEWEQELEEMRQRIL  319 (396)
T ss_pred             hhh-hhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchh----hHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            999 55554  444332  333322221110000000111111111    222222211   233344566788888999


Q ss_pred             HHHHHHHHHhhc
Q 013675          418 EVSESIQKGLVL  429 (438)
Q Consensus       418 ~~a~~l~~~L~~  429 (438)
                      ++++.|.+.|++
T Consensus       320 ~mR~~lv~~L~~  331 (396)
T COG1448         320 EMRQALVDALKA  331 (396)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999987

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=98.66  E-value=7.1e-07  Score=83.10  Aligned_cols=162  Identities=14%  Similarity=0.086  Sum_probs=112.0

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      -+...+...+.+.++++-+-++.        ++.+++-.||.-++.++..     +.   +.|+-.+..|.|+....++.
T Consensus       108 cGtq~iHk~LE~kiAqfh~rED~--------ilypscfdANag~feail~-----pe---dAvfSDeLNhASIIdGirLc  171 (417)
T KOG1359|consen  108 CGTQDIHKLLESKIAQFHGREDT--------ILYPSCFDANAGAFEAILT-----PE---DAVFSDELNHASIIDGIRLC  171 (417)
T ss_pred             ecchHHHHHHHHHHHHHhCCCce--------EEeccccccchHHHHHhcC-----hh---hhhhccccccchhhhhhHHH
Confidence            34556666777788888776542        7888888888888887753     22   56777777899987766554


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      .         ..+.+|+.+++..+.+    +-++|+-...-+..|-+.|+++|.+++++||..+++|.|++.+..   -.
T Consensus       172 k---------ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~---G~  239 (417)
T KOG1359|consen  172 K---------RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFF---GE  239 (417)
T ss_pred             h---------hhccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceee---cC
Confidence            3         2345677888876654    345666666667899999999999999999999999999976653   23


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEE
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVV  357 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l  357 (438)
                      .|....+..--...+|++.....|.+.+..| |+.
T Consensus       240 tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyt  273 (417)
T KOG1359|consen  240 TGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYT  273 (417)
T ss_pred             CCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCc
Confidence            3332212222234479999999999654443 543

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.64  E-value=4.6e-06  Score=90.83  Aligned_cols=89  Identities=12%  Similarity=0.073  Sum_probs=62.0

Q ss_pred             HHHHHhhc--------cCcEEEEEecC-CCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          264 KAIKKYIN--------RNTVLIVGSAP-GFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       264 ~~Le~~I~--------~~t~~vv~~~~-~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.+++.|.        +++.+|++.-. ...-|.+.+    ++++.++|++||++++.|+++.||..     .|.   .+
T Consensus       567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGR-----tG~---~f  638 (817)
T PLN02974        567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWR-----LGV---ES  638 (817)
T ss_pred             HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCc-----ccc---hh
Confidence            55677664        24677777774 455677754    78999999999999999999998854     232   23


Q ss_pred             ccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecc
Q 013675          331 DFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNR  362 (438)
Q Consensus       331 ~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~  362 (438)
                      .....|+  |+++++  |.+.++ ...|.++.+++
T Consensus       639 a~e~~gv~PDIi~~g--KgLtgG~~Plaa~l~~~~  671 (817)
T PLN02974        639 AWELLGCKPDIACYA--KLLTGGLVPLAATLATEE  671 (817)
T ss_pred             hHHhcCCCCCEEeec--ccccCCCCccEEEEEcHH
Confidence            3333454  888886  775555 35777777754

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=6.1e-07  Score=88.10  Aligned_cols=228  Identities=14%  Similarity=0.113  Sum_probs=145.5

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      -+..+...++.+.+|+++|.++.     +  +|..| -..|.+.+-++.     .+|   .-|+-.+..|.|+.--|+.-
T Consensus       178 ~G~~~~hkelE~l~A~f~g~e~a-----~--vF~mG-f~TNs~~~p~l~-----~~g---sLIiSDelNHaSi~~GaRLS  241 (519)
T KOG1357|consen  178 AGTTEEHKELEELVARFLGVEDA-----I--VFSMG-FATNSMNIPSLL-----GKG---SLIISDELNHASLITGARLS  241 (519)
T ss_pred             cccHHHHHHHHHHHHHhcCCcce-----E--EEecc-ccccccCcceee-----cCC---cceeeccccchheecccccc
Confidence            35667778888899999999875     2  45443 333333333333     255   66777788999999999999


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhcc-------Cc------EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINR-------NT------VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~-------~t------~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g  313 (438)
                      |+.++....+     |..+||+.+.+       +|      .+|++..--+.-|.++++.++.+++++|...++.|+++.
T Consensus       242 gAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHS  316 (519)
T KOG1357|consen  242 GATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHS  316 (519)
T ss_pred             CceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeecccc
Confidence            9999988876     67777777753       22      355555555688999999999999999999999999998


Q ss_pred             chhhhhhhhcCCCC-CCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          314 GFVLPFAKKLGYPI-PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       314 g~~~pf~~~~g~~~-p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      .++++   +.|..+ .-+......+|++-..+.|.+.+ .| |.+ ..++++.+.....    ++.     ...++...+
T Consensus       317 iGA~g---~tGrgvce~~g~d~~dvDImMGtftKSfga-~G-Gyi-agsk~lid~lrt~----s~~-----~~yat~~sp  381 (519)
T KOG1357|consen  317 IGAMG---ATGRGVCEYFGVDPEDVDIMMGTFTKSFGA-AG-GYI-AGSKELIDYLRTP----SPS-----ALYATSLSP  381 (519)
T ss_pred             ccccC---CCCcceeeccCCCchhheeecceehhhccc-cc-cee-cCcHHHHhhhccC----CCc-----eeecccCCh
Confidence            77763   222211 01122223368888888898433 32 443 3444443322110    011     111222222


Q ss_pred             hHHH-HHHHHHHH----cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          393 LIAG-AWAALMSL----GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       393 ~ia~-~~aal~~~----g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .++. ...+++.+    |.++-++..+++.+++++++..|++.
T Consensus       382 pvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~  424 (519)
T KOG1357|consen  382 PVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM  424 (519)
T ss_pred             HHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC
Confidence            2222 22334333    34566888899999999999999875

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.56  E-value=4e-06  Score=85.85  Aligned_cols=120  Identities=17%  Similarity=0.158  Sum_probs=77.4

Q ss_pred             eEcCChHHHHHHHHHHHHHHHHH---hcCCC---CCeEEecCCC-cCcHHHHHhhcCcE-E----------EEeeC----
Q 013675          198 NMTSGGTESILLAVKSSRDYMRN---KRGIT---RPEMIIPVSA-HSAYDKAAQYFNIK-L----------WRVPV----  255 (438)
Q Consensus       198 ~~t~ggt~a~~~al~a~~~~~~~---~~G~~---~~~Viv~~~~-h~s~~~a~~~~Gi~-v----------~~v~~----  255 (438)
                      .++++||||+..|++.+|.+..+   .+|.+   +.+|+.-..+ |-...-+...-|-. .          ..++.    
T Consensus       107 ~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~  186 (431)
T TIGR03251       107 FFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLT  186 (431)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCccc
Confidence            89999999999999999976421   12321   3567666554 43333333222211 0          01111    


Q ss_pred             ---CCCC--------ccCHHHHHHhhc---cCcEEEEEecCCCCCcccc----CHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          256 ---DKEF--------RADVKAIKKYIN---RNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       256 ---~~~~--------~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~id----di~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                         +...        .-+++++++.+.   +++.+|++.......|.+.    .+++|.++|++||+.+++|++++|+..
T Consensus       187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~Gr  266 (431)
T TIGR03251       187 FPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGL  266 (431)
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCc
Confidence               1000        023455666664   5688999998888788764    389999999999999999999987644

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.52  E-value=3.3e-06  Score=79.00  Aligned_cols=160  Identities=22%  Similarity=0.220  Sum_probs=110.7

Q ss_pred             HHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-cCCCcCcHHHH----------HhhcC
Q 013675          179 MTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-PVSAHSAYDKA----------AQYFN  247 (438)
Q Consensus       179 ~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-~~~~h~s~~~a----------~~~~G  247 (438)
                      -.|+.||....-     +-.---+||.|+..|+....     ++|   |+++. ....|-...+.          .+-+|
T Consensus        73 vyA~vf~aE~a~-----VRpq~isGTHAI~~aLfg~L-----Rpg---Dell~i~G~PYDTLeevIG~rg~~~gSL~dfg  139 (416)
T COG4100          73 VYAQVFGAEAAL-----VRPQIISGTHAIACALFGIL-----RPG---DELLYITGSPYDTLEEVIGLRGEGQGSLKDFG  139 (416)
T ss_pred             HHHHHhccccce-----eeeeeecchhHHHHHHHhcc-----CCC---CeEEEecCCcchhHHHHhccCCCCcccHHHhC
Confidence            356677776543     22334578999999998876     378   87753 33333333333          34457


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecC----CCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhh
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAP----GFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~----~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~  321 (438)
                      ++.+.||+..++++|.+.++.+|+++|++|.+.-.    .-|.=.+++|+++.++.++-  ++.+.||.|||-|+-    
T Consensus       140 i~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE----  215 (416)
T COG4100         140 IKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVE----  215 (416)
T ss_pred             cceeecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhh----
Confidence            88999999999999999999999999999877643    23444567778888888775  578999999997763    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCC--CCcEEEEEecc
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNR  362 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~  362 (438)
                             .......|+|.+..|.=|.-.+.  +-.|.+.-|.+
T Consensus       216 -------~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~  251 (416)
T COG4100         216 -------EKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAE  251 (416)
T ss_pred             -------ccCccccchhhhccceeeCCCCceeeccceeechHH
Confidence                   23445678999999999983222  22355444443

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.46  E-value=8.3e-06  Score=79.36  Aligned_cols=180  Identities=13%  Similarity=0.124  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC-------CCCCeEEecCCCcCcHHHHHhhc
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-------ITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G-------~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      -|+++.+++++|.++++    +  ++..++|-.++.-+.+... .....|       .++-+.++|.+.|-.....++.+
T Consensus        72 pe~r~l~a~llgv~~~~----v--iv~gNSSL~lM~d~i~~a~-~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~  144 (425)
T PF12897_consen   72 PEARELFAELLGVPPEN----V--IVGGNSSLNLMHDTISRAM-LHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHF  144 (425)
T ss_dssp             HHHHHHHHHHHTS-GGG----E--EE-SS-HHHHHHHHHHHHH-HH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCHHH----E--EEeccchHHHHHHHHHHHH-hcCCCCCCCCchhccCceEEecCCCchHHHHHHHhh
Confidence            35667899999999987    4  4545555444443333221 111111       12346899999999999999999


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhccC--cEE-EEEecCCCCCccccCHHHHHHHH----HHcCCeEEEeccccchhhhh
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINRN--TVL-IVGSAPGFPHGIIDPIQELGELA----LSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~--t~~-vv~~~~~~~tG~iddi~~I~~la----~~~~i~lhVD~a~gg~~~pf  319 (438)
                      |++++.||++++| .|++.+|+++.++  .+. -++..-+||+|....=+-+.++|    ...+..+..|-||+--.+- 
T Consensus       145 Giemi~VpM~~dG-PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~-  222 (425)
T PF12897_consen  145 GIEMIPVPMTEDG-PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLY-  222 (425)
T ss_dssp             T-EEEEEEEETTE-E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSS-
T ss_pred             CcEEEecCCCCCC-CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeecc-
Confidence            9999999998765 7999999999654  444 45556689999997766555555    3568889999998632220 


Q ss_pred             hhhcCCCCCCCcc-------CCCCccEEEeCCCCCCCCCCCcEEEEEecccc
Q 013675          320 AKKLGYPIPPFDF-------SVQGVTSISVDVHKYGLAPKGTSVVLYRNREI  364 (438)
Q Consensus       320 ~~~~g~~~p~~~~-------~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~  364 (438)
                       ..... ....+.       ..++--..-.|+.|.-+.+.|++++..+.+.+
T Consensus       223 -~~~~~-~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl  272 (425)
T PF12897_consen  223 -DEEPR-DALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANL  272 (425)
T ss_dssp             -SSSS-------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHH
T ss_pred             -ccccc-hhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHH
Confidence             00000 000011       11223467788999999999999988776544

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]

Probab=98.37  E-value=1.1e-05  Score=79.97  Aligned_cols=194  Identities=17%  Similarity=0.200  Sum_probs=133.3

Q ss_pred             CCeEEecCCCcCcHH-HHHhhcCcEEEEeeC----CC---CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC
Q 013675          226 RPEMIIPVSAHSAYD-KAAQYFNIKLWRVPV----DK---EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP  291 (438)
Q Consensus       226 ~~~Viv~~~~h~s~~-~a~~~~Gi~v~~v~~----~~---~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd  291 (438)
                      .|.+++++..|+... -+|+.+|+..+.|.+    +.   .|+||...+++.|++      ++..++..-+.+-.|..|.
T Consensus       231 aPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDm  310 (838)
T KOG0630|consen  231 APTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDM  310 (838)
T ss_pred             CceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHH
Confidence            578999999998854 578889985444332    22   468999999999975      3678888999999999999


Q ss_pred             HHHHHHHHHHcC-CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh
Q 013675          292 IQELGELALSHG-TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV  370 (438)
Q Consensus       292 i~~I~~la~~~~-i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~  370 (438)
                      +-+|.++|++++ .|+|.-|---+ .+-|.+-..    -...-...+||++...--|++.|. .-+++...+ +....  
T Consensus       311 i~kildi~eahakfWLHasGhaiA-ALt~aepnn----il~HV~eqldSMal~ialWLGiPS-aPiV~LHRP-leg~a--  381 (838)
T KOG0630|consen  311 ILKILDICEAHAKFWLHASGHAIA-ALTCAEPNN----ILGHVEEQLDSMALNIALWLGIPS-APIVLLHRP-LEGSA--  381 (838)
T ss_pred             HHHHHHHHHHhhheeEeeccchhh-heeecCccc----chhHHHHHHhhccchhHHHhCCCC-CceEEeecc-ccccc--
Confidence            999999999987 99998764211 111111000    001112235999999999976665 344444322 11100  


Q ss_pred             cccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          371 AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       371 ~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                            ...+.+..+.-.|-.++  ..|.+++++|.+.+.++++....+++.+.+.+.+++++++.
T Consensus       382 ------aSafesdpi~rekLdaL--p~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemi  439 (838)
T KOG0630|consen  382 ------ASAFESDPILREKLDAL--PLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMI  439 (838)
T ss_pred             ------chhcccChHHHHhhccc--hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEe
Confidence                  00011111112334444  89999999999999999999999999999999999998864

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=2.7e-06  Score=78.23  Aligned_cols=235  Identities=15%  Similarity=0.112  Sum_probs=149.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675          168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      ....+-.++..-..++.|.....+    |-++.--..+++.+++.++|.+..+     ..-|+-+....-|..|..-..|
T Consensus        54 ll~~isne~a~~~i~l~glhav~n----c~vvpl~tgmslslc~~s~r~krpk-----akyiiw~ridqks~~ksi~~ag  124 (432)
T KOG3843|consen   54 LLACISNEFAKDAIHLAGLHAVAN----CFVVPLATGMSLSLCFLSLRHKRPK-----AKYIIWLRIDQKSCFKSIIHAG  124 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhc----eeEEeccccccHHHHHHHHhhcCCc-----ccEEEEEecchHHHHHHHHhcC
Confidence            345667777777888888764321    4355455557788888888753211     1357778888888888888889


Q ss_pred             cEEEEeeC--CC-CCccCHHHHHHhhccC-cEEEEEecCCC---CCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          248 IKLWRVPV--DK-EFRADVKAIKKYINRN-TVLIVGSAPGF---PHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       248 i~v~~v~~--~~-~~~~d~~~Le~~I~~~-t~~vv~~~~~~---~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      .+.+.|..  +. ....|++++++.|++. .-++.+.+.++   ..-..|.+++|+.+|..|+++-+|..+||--.--.+
T Consensus       125 fepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i  204 (432)
T KOG3843|consen  125 FEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECI  204 (432)
T ss_pred             CCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHH
Confidence            98777753  22 4568999999999763 33444334333   233457799999999999999999999973221110


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                      ...     .-..+...+|.++-+.-|.+..|-|..++..-++...+.   ....|+|....+|          -..+..+
T Consensus       205 ~~i-----aa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~---iak~ypgrasa~p----------s~dllit  266 (432)
T KOG3843|consen  205 HKI-----AAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQE---IAKMYPGRASASP----------SLDLLIT  266 (432)
T ss_pred             HHH-----HHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHH---HHHhCCCccccCc----------cHHHHHH
Confidence            000     001122336888889999999999876654433333221   1122344332222          2256677


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      |.++|..+|.+...+..++-.++++.|.+
T Consensus       267 ll~~gqn~f~e~~~eqkemf~~l~~ki~~  295 (432)
T KOG3843|consen  267 LLSLGQNAFKELFGEQKEMFLKLRNKIIK  295 (432)
T ss_pred             HHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999888887777777777666543

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=3e-05  Score=75.20  Aligned_cols=177  Identities=16%  Similarity=0.144  Sum_probs=125.2

Q ss_pred             HHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675          146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT  225 (438)
Q Consensus       146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~  225 (438)
                      +-+...+..+ .-....|..|-+.....-.+.+.+++++|.+..        ++.+-|-.++..++.|+.     ++|  
T Consensus       115 e~a~~~lrky-GvGsCGPrGFYGt~DvHldlE~~iakF~G~E~a--------ivYs~gF~ti~S~ipafs-----KrG--  178 (467)
T KOG1358|consen  115 EEASFTLRKY-GVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDA--------IVYSYGFSTIESAIPAFS-----KRG--  178 (467)
T ss_pred             HHHHHHHHHh-CCCCcCCCcccccceeecccHHHHHHhhCCcce--------eeeccccchhhhcchhhh-----ccC--
Confidence            3344444444 222344555556555555666779999999864        577777777787888876     378  


Q ss_pred             CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCc-------------EEEEEecCCCCCccccCH
Q 013675          226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT-------------VLIVGSAPGFPHGIIDPI  292 (438)
Q Consensus       226 ~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t-------------~~vv~~~~~~~tG~iddi  292 (438)
                       |.+++.+..+.++.+..+...-++++...+     |.+++|+.+.+.+             +.+++..---++|.+.|+
T Consensus       179 -DIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl  252 (467)
T KOG1358|consen  179 -DIIFVDEAVNFAIQKGLQLSRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPL  252 (467)
T ss_pred             -cEEEEehhhhHHHHHHHhhhhheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCccccc
Confidence             889999999999999888887777777654     7788877765432             467777777789999999


Q ss_pred             HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC-CCCccCCCCccEEEeCCCCC
Q 013675          293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI-PPFDFSVQGVTSISVDVHKY  347 (438)
Q Consensus       293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~-p~~~~~~~gvdsis~s~hK~  347 (438)
                      .+|.++..||...+++|..+.-+.+   .+.|..+ ..+......+|.++.+..-.
T Consensus       253 ~~iv~lk~Kyk~RvildEs~SfG~l---g~~GrGvteH~~v~~~~iDiv~~sm~~a  305 (467)
T KOG1358|consen  253 PEIVKLKNKYKFRVILDESLSFGVL---GKTGRGVTEHFGVPITDIDIVTASMETA  305 (467)
T ss_pred             HHHHHHHhhheEEEEEecccccccc---cccCccccccCCCCccceeeeeeccccc
Confidence            9999999999999999999865554   3444322 12333334568888876444

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.98  E-value=0.00024  Score=68.82  Aligned_cols=235  Identities=15%  Similarity=0.082  Sum_probs=137.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      ..+....++..+..+.+.++++.|.+-.    .++.-.|+|....++.+.+..    +++.  +-|..-.-+..+...+-
T Consensus        43 HRsk~~~~v~~~a~~~lreLl~iPd~Y~----VlflqGGat~qf~~~p~nLl~----~~~~--~yv~~g~Ws~~a~~eA~  112 (365)
T COG1932          43 HRSKEFKNVLEEAEKDLRELLNIPDDYK----VLFLQGGATGQFAMAPMNLLG----KRGT--DYVDTGAWSEFAIKEAK  112 (365)
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCCCCce----EEEEcCccHHHHHHHHHhhhc----ccCc--eeEeeeehhHhHHHHHH
Confidence            3455667778888999999999998752    445556777777777776653    1220  11333333333444443


Q ss_pred             hhcC-cEEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          244 QYFN-IKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       244 ~~~G-i~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      ++.. .++..+...+   ..-.|++..+  +.++...|..|+-+|.+|+--| ...+..     +.++++|...+.+.. 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~~p~~~~-----~~~~v~D~SS~ilsr-  184 (365)
T COG1932         113 KVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPELPDIGS-----DGLLVADASSAILSR-  184 (365)
T ss_pred             HhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceEccCCCCCCC-----CceEEEecccHHhcC-
Confidence            3333 3333222211   2334555444  5555666888888888997644 232221     178999999764433 


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc-hHHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG-LIAGA  397 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~-~ia~~  397 (438)
                                ++|+  ...|.+.++.+|. .||-|.+++++|++.+.+..-...+..  -.|......|+-..+ .+.+.
T Consensus       185 ----------~iDv--sk~dviyagaQKn-lGpaGltvvIvr~~~l~r~~~~~~P~i--f~y~~~~~~~s~yNTPptfa~  249 (365)
T COG1932         185 ----------PIDV--SKYDVIYAGAQKN-LGPAGLTVVIVRPDLLERAESYTLPSI--FDYLTHADNGSMYNTPPTFAW  249 (365)
T ss_pred             ----------CCCh--hHcceEEEehhhc-cCccceEEEEEcHHHHhcccccCCchH--hhchhhhccCCccCCcHHHHH
Confidence                      3444  3468999999999 799999999999765443211101100  001111222222222 22233


Q ss_pred             H---HHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          398 W---AALMSLG-QEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       398 ~---aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      +   ..++++- .-|++.+.++..+.++.|++.+.+.+
T Consensus       250 y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~  287 (365)
T COG1932         250 YLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD  287 (365)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3   3444443 35789999999999999999998873

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=97.37  E-value=0.012  Score=55.84  Aligned_cols=210  Identities=16%  Similarity=0.231  Sum_probs=129.3

Q ss_pred             ccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCc-EEEEeeCC--CCCccCHHHHHHhh
Q 013675          194 QVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI-KLWRVPVD--KEFRADVKAIKKYI  270 (438)
Q Consensus       194 ~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi-~v~~v~~~--~~~~~d~~~Le~~I  270 (438)
                      .+.|+-+-+||.|+..+..-+..+...      ..|+++.++.......++-.|. ++...+.=  ++-.+|.+.+-..|
T Consensus        99 Rv~~vQslsGTGAl~~~A~Fl~~~~~~------~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl  172 (410)
T KOG1412|consen   99 RVFGVQSLSGTGALRIAADFLATFYNK------NTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDL  172 (410)
T ss_pred             cccceeeccccchhhhhHHHHHHhccc------ceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHH
Confidence            367889999999999887665543321      4699999999999999999994 56666552  35678999998888


Q ss_pred             ccCc---EEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc--------CCC
Q 013675          271 NRNT---VLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF--------SVQ  335 (438)
Q Consensus       271 ~~~t---~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~--------~~~  335 (438)
                      +..|   ..++-...+||||. ||    ..+|+++.++.+....-|-+|-||+-      |    ..+-        -..
T Consensus       173 ~~APe~si~iLhaCAhNPTGm-DPT~EQW~qia~vik~k~lf~fFDiAYQGfAS------G----D~~~DawAiR~fV~~  241 (410)
T KOG1412|consen  173 ESAPEGSIIILHACAHNPTGM-DPTREQWKQIADVIKSKNLFPFFDIAYQGFAS------G----DLDADAWAIRYFVEQ  241 (410)
T ss_pred             hhCCCCcEEeeeccccCCCCC-CCCHHHHHHHHHHHHhcCceeeeehhhccccc------C----CccccHHHHHHHHhc
Confidence            7543   33333444789995 44    56888888999999999999987653      1    1111        122


Q ss_pred             Cc-cEEEeCCCCCC--CCCCCcEEE--EEeccccccc---c--hhcccccCCCccCCCCccCCCCCchHHHHHH---HHH
Q 013675          336 GV-TSISVDVHKYG--LAPKGTSVV--LYRNREIRKH---Q--FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA---ALM  402 (438)
Q Consensus       336 gv-dsis~s~hK~~--~~p~g~g~l--~~r~~~~~~~---~--~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a---al~  402 (438)
                      |. =+++-|+.|.+  +++ ..|.+  +.+++.....   |  ......|..     |.-.|.|    |++--.   .++
T Consensus       242 g~e~fv~QSFaKNfGlYne-RvGnltvv~~n~a~i~~v~SQl~lviR~~~SN-----PPAyGAr----IV~kvL~tP~lr  311 (410)
T KOG1412|consen  242 GFELFVCQSFAKNFGLYNE-RVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSN-----PPAYGAR----IVHKVLSTPELR  311 (410)
T ss_pred             CCeEEEEhhhhhhcccccc-cccceEEEecChhHHHHHHHHHHHHHhhccCC-----CcchhhH----HHHHHhcCHHHH
Confidence            33 35666888883  233 24443  4455543321   1  111222221     1112222    211111   111


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..-...++.+..++.+++..|++.|.++
T Consensus       312 e~W~~sik~MssRI~~MR~aLrd~L~aL  339 (410)
T KOG1412|consen  312 EQWIQSIKTMSSRIKKMRTALRDHLVAL  339 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1123445677788999999999998765

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=97.33  E-value=0.02  Score=53.74  Aligned_cols=261  Identities=16%  Similarity=0.085  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHhhccCCCC------cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEc-CChHHHHHHHHHHHHH
Q 013675          144 HFSLINEACSMFAHTNPLH------LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMT-SGGTESILLAVKSSRD  216 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~------~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t-~ggt~a~~~al~a~~~  216 (438)
                      ..+++.++-....+-|...      ...+.....+..+..+.+.+|++.|....   |  +|. .|||.-......-+.-
T Consensus        19 p~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~---v--lf~QGGGt~qFaAv~lNL~g   93 (370)
T KOG2790|consen   19 PESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYK---V--LFLQGGGTGQFAAVPLNLIG   93 (370)
T ss_pred             CHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCcee---E--EEEeCCCcccccccchhhhc
Confidence            3456666666666666442      23345567778888899999999997751   3  444 5555433222222210


Q ss_pred             HHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC-C--CccCHHHHHHhhccCcEEEEEecCCCCCccccC-H
Q 013675          217 YMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-E--FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP-I  292 (438)
Q Consensus       217 ~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~--~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd-i  292 (438)
                         -+.|...|-|++..-+--++.++-++--.+.+..+..+ +  --.|.+.++.  +++...|..|.-.+.+|+-.| +
T Consensus        94 ---lK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~da~yvyyCaNETVHGVEf~~~  168 (370)
T KOG2790|consen   94 ---LKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPDASYVYYCANETVHGVEFDFI  168 (370)
T ss_pred             ---cccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhccc--CCCccEEEEecCceeeceecCCC
Confidence               12343335566666566666666665555555555433 2  2346665554  345568899999999997643 3


Q ss_pred             HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc
Q 013675          293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~  372 (438)
                      .    +-.-.|..++.|-..-     |+      ..++|+...  +.+....+|. .+|.|.-++++|++-+-.. ....
T Consensus       169 P----~~~~~~~vlVaDmSSn-----fl------SrpvDvsk~--gvi~aGAQKN-~G~aG~Tvvivr~dllg~~-~~~t  229 (370)
T KOG2790|consen  169 P----VNDPKGAVLVADMSSN-----FL------SRPVDVSKF--GVIFAGAQKN-VGPAGVTVVIVRKDLLGNA-LDIT  229 (370)
T ss_pred             C----CCCCCCceEEEecccc-----hh------cCCccchhc--ceEEeccccc-cCccccEEEEEehhhhccc-ccCC
Confidence            3    2234578889997642     22      226777655  4678889999 7999999999997644322 1111


Q ss_pred             ---cccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          373 ---TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       373 ---~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                         .+|.--. ...++..+.|...+..+-..++++-+ .|.+.+.+...+.++.+++.|.+..|+.
T Consensus       230 P~v~dyk~~~-~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy  294 (370)
T KOG2790|consen  230 PSVLDYKIMD-KNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFY  294 (370)
T ss_pred             ccccceeeec-cccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeE
Confidence               1111100 01122334444445555566666644 4678888888999999999999877764

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=97.27  E-value=0.0028  Score=60.87  Aligned_cols=218  Identities=13%  Similarity=0.163  Sum_probs=127.9

Q ss_pred             cceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC-C-CCCccCHHHHHHhhcc
Q 013675          195 VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-D-KEFRADVKAIKKYINR  272 (438)
Q Consensus       195 v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~-~-~~~~~d~~~Le~~I~~  272 (438)
                      +.-+-|-+||.|+..+..-+....   ++   ..|++|.++.....+.....|+.+..... + .+..+|.+.+-+.+.+
T Consensus       121 i~tvQ~lSGTGaLriga~Fl~~f~---~~---~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~  194 (427)
T KOG1411|consen  121 IVTVQTLSGTGALRVGAEFLARFY---PS---RDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGE  194 (427)
T ss_pred             eeEEEeccCcchhhHHHHHHHhhc---cc---cceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhc
Confidence            444567889988877665543221   23   57999999988877777888987766654 2 3677888777666654


Q ss_pred             C---cEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc--------CCCCcc
Q 013675          273 N---TVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF--------SVQGVT  338 (438)
Q Consensus       273 ~---t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~--------~~~gvd  338 (438)
                      .   ...++-.+.+||||+=   +..++|.++.++.+..-+.|.+|-||.-      |    .+|-        ...|..
T Consensus       195 ~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaS------G----~~d~DA~avR~F~~~g~~  264 (427)
T KOG1411|consen  195 APEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFAS------G----DLDKDAQAVRLFVEDGHE  264 (427)
T ss_pred             CCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhccccc------C----CchhhHHHHHHHHHcCCc
Confidence            2   3444445557889853   3377899999999999999999987753      1    1111        123333


Q ss_pred             -EEEeCCCCCCCCCCC--cEEE--EEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHH
Q 013675          339 -SISVDVHKYGLAPKG--TSVV--LYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENT  413 (438)
Q Consensus       339 -sis~s~hK~~~~p~g--~g~l--~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~  413 (438)
                       .++-|.-|.+ |-+|  .|.+  ++.+.+...+.-....-.-...|..|...|.|-.+.|..- -.|+..-.....-+.
T Consensus       265 ~~laQSyAKNM-GLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d-~~l~~~W~~evk~Ma  342 (427)
T KOG1411|consen  265 ILLAQSYAKNM-GLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSD-PDLKNQWLGEVKGMA  342 (427)
T ss_pred             eEeehhhhhhc-chhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCC-hHHHHHHHHHHHHHH
Confidence             4555677873 3333  3433  4444443222100000011123445556666544322111 111111123345667


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 013675          414 KAIMEVSESIQKGLVLF  430 (438)
Q Consensus       414 ~~~~~~a~~l~~~L~~~  430 (438)
                      ++++.+++.|.+.|++.
T Consensus       343 dRi~~mR~~L~d~L~~~  359 (427)
T KOG1411|consen  343 DRIISMRQQLFDALEKE  359 (427)
T ss_pred             HhhhhhHHHHhHHhhcC
Confidence            78888899999998764

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=96.87  E-value=0.005  Score=58.09  Aligned_cols=206  Identities=16%  Similarity=0.158  Sum_probs=108.0

Q ss_pred             eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc------C--c-E---EEEeeCCC--CC----
Q 013675          198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF------N--I-K---LWRVPVDK--EF----  259 (438)
Q Consensus       198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~------G--i-~---v~~v~~~~--~~----  259 (438)
                      .|+++|||||.+|++.+|+..+.+     |.|.+.-..|.-.....+.-      |  . +   ++..|+.+  .|    
T Consensus       106 ~F~NSGSEANDLALRLAR~ftkhq-----DvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~  180 (452)
T KOG1403|consen  106 FFVNSGSEANDLALRLARNFTKHQ-----DVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRD  180 (452)
T ss_pred             EEecCCchhhHHHHHHHHhhcccC-----ceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccccccccc
Confidence            899999999999999999865432     44444333332222222111      1  1 2   22234321  11    


Q ss_pred             ---------ccCHHHHHHhhcc------CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          260 ---------RADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       260 ---------~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                               ..-.+.+++.+++      ..++.++.+-++--|.+-|    ++++++..+.+|-..+.|+++-||..   
T Consensus       181 ~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGR---  257 (452)
T KOG1403|consen  181 KMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGR---  257 (452)
T ss_pred             ccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccc---
Confidence                     1123445555542      2455666666676777766    78999999999999999999988754   


Q ss_pred             hhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~  398 (438)
                        .|..  -+.+...++  |++++.  |-++.+...+.+..+.+ +.+. +..    .|-.|  ....|..|-    ++.
T Consensus       258 --vG~h--yWafq~y~fiPDIVtmg--KpmGNGhPVa~Vattke-IA~A-f~a----tgv~Y--FNTyGGnPV----sCA  319 (452)
T KOG1403|consen  258 --VGSH--YWAFQTYNFIPDIVTMG--KPMGNGHPVAAVATTKE-IAQA-FHA----TGVEY--FNTYGGNPV----SCA  319 (452)
T ss_pred             --cchh--hhhhhhhccccchheec--ccCCCCCeeeEEeccHH-HHHH-hcc----cccee--hhccCCCch----hHH
Confidence              2221  133333333  666654  43333344566666533 3221 100    01111  111222222    344


Q ss_pred             HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          399 AALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      ..+..+..-.-+++.++..+..++|...|++
T Consensus       320 v~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~  350 (452)
T KOG1403|consen  320 VGLAVMRVCEDENLQEHAQQVGEKLEVLLRR  350 (452)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            4333333333345566666677777776654

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=96.48  E-value=0.022  Score=49.54  Aligned_cols=60  Identities=17%  Similarity=0.301  Sum_probs=49.7

Q ss_pred             cchhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          165 IFQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      ...+..++.+.+.+++.+.+|    .++++    |  ++|+|+++++.+++.++.+     +|   |.|+++.+.|+.
T Consensus        90 ~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~----I--vvt~Ga~~al~~l~~~l~d-----pG---D~VlVp~P~Y~~  153 (153)
T PLN02994         90 DYHGLANFRKAIANFMAEARGGRVKFDADM----I--VLSAGATAANEIIMFCIAD-----PG---DAFLVPTPYYAA  153 (153)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCCCCccchhh----e--EEcCCHHHHHHHHHHHHcC-----CC---CEEEEeCCCCCC
Confidence            355677889999999999988    34444    7  9999999999999999875     78   999999998863

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=96.32  E-value=0.0074  Score=58.39  Aligned_cols=171  Identities=16%  Similarity=0.221  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcE
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK  249 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~  249 (438)
                      .++++++ +.+-++.|--..+ |--+  ++.+|+|+-++.|+-|+.-...  ..-+.-.|+.+.+.|+++.....++.-.
T Consensus        46 ~eL~~~I-r~LH~~VGNAvt~-gr~I--V~GtGsTQL~~AalyALSp~~~--~~~~p~~VVa~aPYY~~Y~~qt~~f~s~  119 (363)
T PF04864_consen   46 PELERQI-RRLHRVVGNAVTD-GRYI--VFGTGSTQLFNAALYALSPNAS--PSSSPASVVAAAPYYSSYPEQTDFFDSR  119 (363)
T ss_dssp             HHHHHHH-HHHHHHH-SB--T-TSEE--EEECHHHHHHHHHHHHHCHHT---TTSSSEEEEE-SS--CHHHHHCCCT-BT
T ss_pred             HHHHHHH-HHHHHHhcccccc-CcEE--EEcCCHHHHHHHHHHhcCCCCC--CCCCCceeEecCCCccchHHHHHhcccc
Confidence            4455433 3445555542221 1224  8899999999999998764211  1111237888888889898888887543


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      .-...=|.      ......=+..+..=++|.||||.|.+-.     .+++.-+..++.|-||=   +|  +-    . |
T Consensus       120 ~y~w~Gda------~~~~~~~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYY---WP--hy----T-p  178 (363)
T PF04864_consen  120 LYKWAGDA------SNFKNSDNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYY---WP--HY----T-P  178 (363)
T ss_dssp             TEEEEEEC------CCGTT-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT----ST--TT----S--
T ss_pred             CccccccH------HhhccCCCCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeee---cc--cc----c-c
Confidence            33332221      1111111234667788999999998742     12344456679999973   33  10    1 1


Q ss_pred             CccCCCCccEEEeCCCCC-CCCCCCcEEEEEecccccccc
Q 013675          330 FDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQ  368 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~  368 (438)
                      +.. ...=|++.++..|. |.++...|+-+++|+++.+..
T Consensus       179 I~~-~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM  217 (363)
T PF04864_consen  179 ITA-PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKM  217 (363)
T ss_dssp             --S--B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHH
T ss_pred             cCC-CCCCceEEEEEecccCccccccceeeecCHHHHHHH
Confidence            111 11238999999998 788888999999999876653

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=92.40  E-value=1.4  Score=43.07  Aligned_cols=140  Identities=15%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             CHHHHHHhhcc-----C-cEEEEEecCCCCCccc----cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC--CCC
Q 013675          262 DVKAIKKYINR-----N-TVLIVGSAPGFPHGII----DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP--IPP  329 (438)
Q Consensus       262 d~~~Le~~I~~-----~-t~~vv~~~~~~~tG~i----ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~--~p~  329 (438)
                      .++++|+.|..     + .+++++.-.++.-|--    +=++.+.+++++||+.++||+++.|+..     .|.-  ...
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGa-----TGk~WaHeh  328 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGA-----TGKFWAHEH  328 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCc-----cCceeeehh
Confidence            35667777752     2 4566666655555532    3379999999999999999999876543     1210  001


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc-chhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~-~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      ++ ....+|.+++| .|+..+    |  ++.+++++.. .|.....|-|...          .  ..-+-..++.+.++ 
T Consensus       329 w~-l~~PpD~vTFS-KK~q~g----G--ffh~~~frpn~pYrifNTWmGdP~----------k--~lll~~vv~~I~~~-  387 (484)
T KOG1405|consen  329 WN-LDSPPDVVTFS-KKFQTG----G--FFHDEEFRPNEPYRIFNTWMGDPS----------K--NLLLEEVVQEIKRE-  387 (484)
T ss_pred             cC-CCCCccceehh-hhhhcC----c--cccCcccCCCchHHHhhhhcCChH----------H--HHHHHHHHHHHhHH-
Confidence            11 12235888876 244211    2  3455666654 5666666766431          1  11222333333333 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 013675          409 YLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~  429 (438)
                        .+.+......++|.++|.+
T Consensus       388 --~Ll~n~~~vG~~l~~gL~~  406 (484)
T KOG1405|consen  388 --DLLNNVAHVGKALLKGLLE  406 (484)
T ss_pred             --HHHHHHHHHHHHHHHHHHH
Confidence              3444555556666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	438
3maf_B	518	Crystal Structure Of Stspl (Asymmetric Form) Length		1e-103
3mbb_A	514	Crystal Structure Of Stspl - Apo Form, After Treatm		1e-103
3mau_A	514	Crystal Structure Of Stspl In Complex With Phosphoe		1e-103
3maf_A	518	Crystal Structure Of Stspl (Asymmetric Form) Length		1e-103
3mad_A	514	Crystal Structure Of Stspl (Symmetric Form) Length		1e-103
3mc6_C	497	Crystal Structure Of Scdpl1 Length = 497		7e-73
3mc6_A	497	Crystal Structure Of Scdpl1 Length = 497		3e-72
3f9t_A	397	Crystal Structure Of L-tyrosine Decarboxylase Mfna		6e-26
3hbx_A	502	Crystal Structure Of Gad1 From Arabidopsis Thaliana		2e-16
1pmm_A	466	Crystal Structure Of Escherichia Coli Gadb (Low Ph)		4e-15
2dgk_A	452	Crystal Structure Of An N-terminal Deletion Mutant		5e-15
1xey_A	466	Crystal Structure Of The Complex Of Escherichia Col		6e-15

>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 252/364 (69%), Gaps = 13/364 (3%)
Query: 72  GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
           G+     A +   +D    ++S +K  R+ + +   LPRAGL    I  E       +  
Sbjct: 39  GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 98
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
            W+ G  SG VY G    E H + +NE  ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 99  AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 155
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
           LG    A+GG VCG +TSGGTES+LLA+K+ RD+ R  +GIT PE ++PVSAH+A+DKAA
Sbjct: 156 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 213
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
           QYF IKL R P+D ++RADV A+++ I  NTV++ GSAPG+PHG++DPI E+  LA  HG
Sbjct: 214 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG 273
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
              HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D HKYG   KGTSV+LYR  +
Sbjct: 274 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPD 333
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
           +  +Q+    +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 334 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 393
Query: 424 QKGL 427
           + G+
Sbjct: 394 KAGV 397

>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment With Semicarbazide Length = 514

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 251/364 (68%), Gaps = 13/364 (3%)
Query: 72  GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
           G+     A +   +D    ++S +K  R+ + +   LPRAGL    I  E       +  
Sbjct: 35  GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 94
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
            W+ G  SG VY G    E H + +NE  ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 95  AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 151
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
           LG    A+GG VCG +TSGGTES+LLA+K+ RD+ R  +GIT PE ++PVSAH+A+DKAA
Sbjct: 152 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 209
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
           QYF IKL R P+D ++RADV A+++ I  NTV++ GSAPG PHG++DPI E+  LA  HG
Sbjct: 210 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGXPHGVVDPIPEIAALAAEHG 269
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
              HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D HKYG   KGTSV+LYR  +
Sbjct: 270 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPD 329
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
           +  +Q+    +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 330 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389
Query: 424 QKGL 427
           + G+
Sbjct: 390 KAGV 393

>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With Phosphoethanolamine Length = 514

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 251/364 (68%), Gaps = 13/364 (3%)
Query: 72  GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
           G+     A +   +D    ++S +K  R+ + +   LPRAGL    I  E       +  
Sbjct: 35  GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 94
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
            W+ G  SG VY G    E H + +NE  ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 95  AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 151
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
           LG    A+GG VCG +TSGGTES+LLA+K+ RD+ R  +GIT PE ++PVSAH+A+DKAA
Sbjct: 152 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 209
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
           QYF IKL R P+D ++RADV A+++ I  NTV++ GSAPG+PHG++DPI E+  LA  HG
Sbjct: 210 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG 269
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
              HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D H YG   KGTSV+LYR  +
Sbjct: 270 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHAYGYGAKGTSVILYRRPD 329
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
           +  +Q+    +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 330 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389
Query: 424 QKGL 427
           + G+
Sbjct: 390 KAGV 393

>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 251/364 (68%), Gaps = 13/364 (3%)
Query: 72  GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
           G+     A +   +D    ++S +K  R+ + +   LPRAGL    I  E       +  
Sbjct: 39  GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 98
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
            W+ G  SG VY G    E H + +NE  ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 99  AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 155
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
           LG    A+GG VCG +TSGGTES+LLA+K+ RD+ R  +GIT PE ++PVSAH+A+DKAA
Sbjct: 156 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 213
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
           QYF IKL R P+D ++RADV A+++ I  NTV++ GSAPG+PHG++DPI E+  LA  HG
Sbjct: 214 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG 273
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
              HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D H YG   KGTSV+LYR  +
Sbjct: 274 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPD 333
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
           +  +Q+    +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 334 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 393
Query: 424 QKGL 427
           + G+
Sbjct: 394 KAGV 397

>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form) Length = 514

Iteration: 1
 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 251/364 (68%), Gaps = 13/364 (3%)
Query: 72  GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
           G+     A +   +D    ++S +K  R+ + +   LPRAGL    I  E       +  
Sbjct: 35  GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 94
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
            W+ G  SG VY G    E H + +NE  ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 95  AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 151
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
           LG    A+GG VCG +TSGGTES+LLA+K+ RD+ R  +GIT PE ++PVSAH+A+DKAA
Sbjct: 152 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 209
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
           QYF IKL R P+D ++RADV A+++ I  NTV++ GSAPG+PHG++DPI E+  LA  HG
Sbjct: 210 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG 269
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
              HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D H YG   KGTSV+LYR  +
Sbjct: 270 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPD 329
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
           +  +Q+    +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 330 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389
Query: 424 QKGL 427
           + G+
Sbjct: 390 KAGV 393

>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1 Length = 497

Iteration: 1
 Score =  271 bits (692), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 159/362 (43%), Positives = 228/362 (62%), Gaps = 21/362 (5%)
Query: 73  VNKYIEAEKQKVVDKMQSGVKSKREGW-WTELPRAGLGVG-VIEKLKEEKGKDVV----W 126
           V K +   KQ + D++   ++S  +   + +LP  G+    VIE+L   K  D++    W
Sbjct: 10  VEKEVTKVKQSIEDEL---IRSDSQLMNFPQLPSNGIPQDDVIEELN--KLNDLIPHTQW 64
Query: 127 -QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG 185
            +GK SG VY GG +   H   I  A   +   N LH D+F +V + E+EV++M   +  
Sbjct: 65  KEGKVSGAVYHGGDDLI-HLQTI--AYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMF- 120
Query: 186 NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245
               A     CG  TSGGTES+LLA  S++ Y  + RGIT PE+I PV+AH+ +DKAA Y
Sbjct: 121 ---NAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYY 177
Query: 246 FNIKLWRVPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGT 304
           F +KL  V +D   ++ D+  +KK+IN+NTVL+VGSAP FPHGI D I+ LG++A  +  
Sbjct: 178 FGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKL 237
Query: 305 CLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
            LHVD CLG F++ F +K GY  +P  DF V GVTSIS D HKYG APKG+SV++YRN +
Sbjct: 238 PLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSD 297
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
           +R HQ+     W+GGLY SPT+AGSRPG ++ G WA ++++G+ GY+E+ + I+  +   
Sbjct: 298 LRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKF 357
Query: 424 QK 425
           +K
Sbjct: 358 KK 359

>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1 Length = 497

Iteration: 1
 Score =  269 bits (687), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 21/362 (5%)
Query: 73  VNKYIEAEKQKVVDKMQSGVKSKREGW-WTELPRAGLGVG-VIEKLKEEKGKDVV----W 126
           V K +   KQ + D++   ++S  +   + +LP  G+    VIE+L   K  D++    W
Sbjct: 10  VEKEVTKVKQSIEDEL---IRSDSQLMNFPQLPSNGIPQDDVIEELN--KLNDLIPHTQW 64
Query: 127 -QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG 185
            +GK SG VY GG +   H   I  A   +   N LH D+F +V + E+EV++M   +  
Sbjct: 65  KEGKVSGAVYHGGDDLI-HLQTI--AYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMF- 120
Query: 186 NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245
               A     CG  TSGGTES+LLA  S++ Y  + RGIT PE+I PV+AH+ +DKAA Y
Sbjct: 121 ---NAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYY 177
Query: 246 FNIKLWRVPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGT 304
           F +KL  V +D   ++ D+  +KK+IN+NTVL+VGSAP FPHGI D I+ LG++A  +  
Sbjct: 178 FGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKL 237
Query: 305 CLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
            LHVD CLG F++ F +K GY  +P  DF V GVTSIS D H YG APKG+SV++YRN +
Sbjct: 238 PLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHXYGFAPKGSSVIMYRNSD 297
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
           +R HQ+     W+GGLY SPT+AGSRPG ++ G WA ++++G+ GY+E+ + I+  +   
Sbjct: 298 LRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKF 357
Query: 424 QK 425
           +K
Sbjct: 358 KK 359

>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 160/310 (51%), Gaps = 31/310 (10%)
Query: 112 VIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVAR 171
           ++E+LK+ +  D+ ++    G ++  GS       +  +   +F  TN     +F+    
Sbjct: 15  ILEELKKYRSLDLKYE---DGNIF--GSXCSNVLPITRKIVDIFLETNLGDPGLFKGTKL 69
Query: 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR--GITR--- 226
            E + +A+  +LL NK+        G++ SGGTE+ L A++  ++  R KR  G+++   
Sbjct: 70  LEEKAVALLGSLLNNKDAY------GHIVSGGTEANLXALRCIKNIWREKRRKGLSKNEH 123
Query: 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVL-IVGSAPGFP 285
           P++I+P++AH +++K  +  +++    P+ +++  D K +K  +    V  I+G A    
Sbjct: 124 PKIIVPITAHFSFEKGREXXDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTE 183
Query: 286 HGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA----KKLGYPIPPFDFSVQGVTSIS 341
            G ID I+EL ++A  +   +HVD   GG V+PF     KK G     FDFS+ GV SI+
Sbjct: 184 LGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNY-KFDFSL-GVDSIT 241
Query: 342 VDVHKYGLAPKGTSVVLYRNREIRKHQFVA---VTEWSGGLYVSPTVAGSRPGGLIAGAW 398
           +D HK G  P  +  +L+++   +++  V    +TE         T+ G+R G   A  +
Sbjct: 242 IDPHKXGHCPIPSGGILFKDIGYKRYLDVDAPYLTETR-----QATILGTRVGFGGACTY 296
Query: 399 AALMSLGQEG 408
           A L  LG+EG
Sbjct: 297 AVLRYLGREG 306

>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana Length = 502

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 128/286 (44%), Gaps = 23/286 (8%)
Query: 157 HTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRD 216
           + N + +D +      +   + M A L  N          G  T G +E+I+LA  + + 
Sbjct: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLF-NAPLEEAETAVGVGTVGSSEAIMLAGLAFKR 139
Query: 217 YMRNKRG-----ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRA-DVKAIKKYI 270
             +NKR      + +P ++   +    ++K A+YF ++L  V + + +   D +     +
Sbjct: 140 KWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMV 199
Query: 271 NRNTVLIVGSAPGFPHGIIDPIQELGELALSHG------TCLHVDLCLGGFVLPFAKKLG 324
           + NT+ +        +G  + ++ L +L +         T +HVD   GGF+ PF     
Sbjct: 200 DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFL---- 255
Query: 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384
           YP   +DF +  V SI+V  H YGL   G   V++RN+E    + +    + G    + T
Sbjct: 256 YPELEWDFRLPLVKSINVSGHXYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFT 315
Query: 385 VAGSRPGGLIAGAWAALMSLGQEGY---LENTKAIMEVSESIQKGL 427
           +  S+    +   +  L+ LG EGY   +EN +  M V   +++GL
Sbjct: 316 LNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIV---LREGL 358

>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph) Length = 466

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 28/272 (10%)
Query: 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK---- 221
           +   A  +   + M A L  +      GQ  G  T G +E+ +L   + +   R +    
Sbjct: 90  YPQSAAIDLRCVNMVADLW-HAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA 148
Query: 222 -RGITRPEMII-PVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIV 278
            +   +P ++  PV     + K A+Y++++L  +P+   +   D K + +  + NT+ +V
Sbjct: 149 GKPTDKPNLVCGPVQI--CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVV 206
Query: 279 GSA----------PGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328
            +           P   H  +D  Q    + +     +H+D   GGF+ PF      P  
Sbjct: 207 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDID----MHIDAASGGFLAPFVA----PDI 258
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
            +DF +  V SIS   HK+GLAP G   V++R+ E    + V   ++ GG   +  +  S
Sbjct: 259 VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFS 318
Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
           RP G +   +   + LG+EGY +   A  +V+
Sbjct: 319 RPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 350

>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of Escherichia Coli Gadb In An Autoinhibited State (aldamine) Length = 452

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 28/272 (10%)
Query: 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK---- 221
           +   A  +   + M A L  +      GQ  G  T G +E+ +L   + +   R +    
Sbjct: 76  YPQSAAIDLRCVNMVADLW-HAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA 134
Query: 222 -RGITRPEMII-PVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIV 278
            +   +P ++  PV     + K A+Y++++L  +P+   +   D K + +  + NT+ +V
Sbjct: 135 GKPTDKPNLVCGPVQI--CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVV 192
Query: 279 GSA----------PGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328
            +           P   H  +D  Q    + +     +H+D   GGF+ PF      P  
Sbjct: 193 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDID----MHIDAASGGFLAPFVA----PDI 244
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
            +DF +  V SIS   HK+GLAP G   V++R+ E    + V   ++ GG   +  +  S
Sbjct: 245 VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFS 304
Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
           RP G +   +   + LG+EGY +   A  +V+
Sbjct: 305 RPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 336

>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada With Glutarate At 2.05 A Resolution Length = 466

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 28/272 (10%)
Query: 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK---- 221
           +   A  +   + M A L  +      GQ  G  T G +E+ +L   + +   R +    
Sbjct: 90  YPQSAAIDLRCVNMVADLW-HAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA 148
Query: 222 -RGITRPEMII-PVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIV 278
            +   +P ++  PV     + K A+Y++++L  +P+   +   D K + +  + NT+ +V
Sbjct: 149 GKPTDKPNLVCGPVQI--CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVV 206
Query: 279 GSA----------PGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328
            +           P   H  +D  Q    + +     +H+D   GGF+ PF      P  
Sbjct: 207 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDID----MHIDAASGGFLAPFVA----PDI 258
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
            +DF +  V SIS   HK+GLAP G   V++R+ E    + V   ++ GG   +  +  S
Sbjct: 259 VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFS 318
Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
           RP G +   +   + LG+EGY +   A  +V+
Sbjct: 319 RPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 350

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	438
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	1e-137
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	1e-133
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	1e-128
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	1e-110
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	1e-109
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	4e-74
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	5e-21
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	4e-20
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	6e-20
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	1e-19
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	1e-19
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	2e-19
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	4e-19
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	2e-16
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	6e-08
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	8e-08
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	3e-07
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	2e-04

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score =  401 bits (1032), Expect = e-137
 Identities = 176/377 (46%), Positives = 250/377 (66%), Gaps = 13/377 (3%)

Query: 65  SSIKLVPGVNKYIEAEKQKVVD---KMQSGVKSKREGW--WTELPRAGLGV-GVIEKLKE 118
                + G+     A +   +D    ++S +K  R+ +     LPRAGL    ++ ++  
Sbjct: 28  QDYCEIRGIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAA 87

Query: 119 EKGKDVVW--QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV 176
               +      G  SG VY G        + +NE  ++ + +NPLH D++ S A+FEAEV
Sbjct: 88  MGAAESPAWRDGYASGAVYHGDEHHI---AFLNEVYALQSQSNPLHPDLWPSTAKFEAEV 144

Query: 177 IAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH 236
           +AMTA +LG     +GG VCG +TSGGTES+LLA+K+ RD+ R  +GIT PE ++PVSAH
Sbjct: 145 VAMTAHMLGGDA--AGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAH 202

Query: 237 SAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELG 296
           +A+DKAAQYF IKL R P+D ++RADV A+++ I  NTV++ GSAPG+PHG++DPI E+ 
Sbjct: 203 AAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIA 262

Query: 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSV 356
            LA  HG   HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D HKYG   KGTSV
Sbjct: 263 ALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSV 322

Query: 357 VLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAI 416
           +LYR  ++  +Q+    +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I
Sbjct: 323 ILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRI 382

Query: 417 MEVSESIQKGLVLFPMF 433
           ++ ++ ++ G+   P  
Sbjct: 383 LQAADRLKAGVRAIPSL 399

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score =  392 bits (1008), Expect = e-133
 Identities = 155/366 (42%), Positives = 222/366 (60%), Gaps = 15/366 (4%)

Query: 70  VPGVNKYIEAEKQKVVDKMQSGVKSKREGW--WTELPRAGLGV-GVIEKLKEEKG--KDV 124
            P +   +E E  KV   ++  +         + +LP  G+    VIE+L +        
Sbjct: 3   SPFLRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPHT 62

Query: 125 VW-QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
            W +GK SG VY GG +      L   A   +   N LH D+F +V + E+EV++M   +
Sbjct: 63  QWKEGKVSGAVYHGGDDLI---HLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRM 119

Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
                 A     CG  TSGGTES+LLA  S++ Y  + RGIT PE+I PV+AH+ +DKAA
Sbjct: 120 FN----APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAA 175

Query: 244 QYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH 302
            YF +KL  V +D   ++ D+  +KK+IN+NTVL+VGSAP FPHGI D I+ LG++A  +
Sbjct: 176 YYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKY 235

Query: 303 GTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRN 361
              LHVD CLG F++ F +K GY  +P  DF V GVTSIS D HKYG APKG+SV++YRN
Sbjct: 236 KLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRN 295

Query: 362 REIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSE 421
            ++R HQ+     W+GGLY SPT+AGSRPG ++ G WA ++++G+ GY+E+ + I+  + 
Sbjct: 296 SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAM 355

Query: 422 SIQKGL 427
             +K +
Sbjct: 356 KFKKYI 361

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score =  375 bits (964), Expect = e-128
 Identities = 88/336 (26%), Positives = 162/336 (48%), Gaps = 26/336 (7%)

Query: 103 LPRAGLGV-GVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNP 160
           +   G+    ++E+LK+ +  D+ ++ G   G++            +  +   +F  TN 
Sbjct: 5   MQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMC------SNVLPITRKIVDIFLETNL 58

Query: 161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN 220
               +F+     E + +A+  +LL NK+        G++ SGGTE+ L+A++  ++  R 
Sbjct: 59  GDPGLFKGTKLLEEKAVALLGSLLNNKD------AYGHIVSGGTEANLMALRCIKNIWRE 112

Query: 221 KR-----GITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTV 275
           KR         P++I+P++AH +++K  +  +++    P+ +++  D K +K  +    V
Sbjct: 113 KRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDV 172

Query: 276 L-IVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK---KLGYPIPPFD 331
             I+G A     G ID I+EL ++A  +   +HVD   GG V+PF     K       FD
Sbjct: 173 DGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD 232

Query: 332 FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391
           FS+ GV SI++D HK G  P  +  +L+++   +++  V     +       T+ G+R G
Sbjct: 233 FSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTET--RQATILGTRVG 289

Query: 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
              A  +A L  LG+EG  +     ME +  + K L
Sbjct: 290 FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKL 325

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score =  331 bits (849), Expect = e-110
 Identities = 70/339 (20%), Positives = 134/339 (39%), Gaps = 23/339 (6%)

Query: 101 TELPRAGLGVGVI-EKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN 159
              P   +   V  + + +E   D   +   +        E       +++   +  + N
Sbjct: 16  KRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDE------NVHKLMDLSINKN 69

Query: 160 PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR 219
            +  + +   A  +   + M A L  +      GQ  G  T G +E+ +L   + +   R
Sbjct: 70  WIDKEEYPQSAAIDLRCVNMVADLW-HAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWR 128

Query: 220 NKR----GITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNT 274
            +       T    ++       + K A+Y++++L  +P+       D K + +  + NT
Sbjct: 129 KRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENT 188

Query: 275 VLIVGSAPGFPHGIIDPIQELG------ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328
           + +V +      G  +  Q L       +        +H+D   GGF+ PF      P  
Sbjct: 189 IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV----APDI 244

Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
            +DF +  V SIS   HK+GLAP G   V++R+ E    + V   ++ GG   +  +  S
Sbjct: 245 VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFS 304

Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
           RP G +   +   + LG+EGY +   A  +V+  +   +
Sbjct: 305 RPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEI 343

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score =  330 bits (847), Expect = e-109
 Identities = 75/374 (20%), Positives = 147/374 (39%), Gaps = 24/374 (6%)

Query: 73  VNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGV-GVIEKLKEEKGKDVVWQGKCS 131
           V  +  +E    V    +    +      ++P   +      + + +E   D   +   +
Sbjct: 2   VLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLA 61

Query: 132 GTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKAS 191
             V              ++      + N + +D +      +   + M A L     +  
Sbjct: 62  SFVTTWMEP------ECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLE-E 114

Query: 192 GGQVCGNMTSGGTESILLAVKSSRDYMRNKR-----GITRPEMIIPVSAHSAYDKAAQYF 246
                G  T G +E+I+LA  + +   +NKR      + +P ++   +    ++K A+YF
Sbjct: 115 AETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF 174

Query: 247 NIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG-- 303
            ++L  V + +  +  D +     ++ NT+ +        +G  + ++ L +L +     
Sbjct: 175 EVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKE 234

Query: 304 ----TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLY 359
               T +HVD   GGF+ PF     YP   +DF +  V SI+V  HKYGL   G   V++
Sbjct: 235 TGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290

Query: 360 RNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEV 419
           RN+E    + +    + G    + T+  S+    +   +  L+ LG EGY    +   E 
Sbjct: 291 RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCREN 350

Query: 420 SESIQKGLVLFPMF 433
              +++GL     F
Sbjct: 351 MIVLREGLEKTERF 364

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score =  238 bits (608), Expect = 4e-74
 Identities = 68/392 (17%), Positives = 122/392 (31%), Gaps = 58/392 (14%)

Query: 66  SIKLVPGVNKYIEAEKQKVVDK--MQSGVKSKREGW--------WTELPRAGLGVGVIEK 115
           S  LVP  +  ++   + ++ K   + G     E            ++P  G+    I+ 
Sbjct: 11  SSGLVPRGSHMLDFNIEGLIPKNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKL 70

Query: 116 -LKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAH-------TNPLHLDIFQ 167
            LK     D     K   +V IG  EA  +  +  E  S F H                 
Sbjct: 71  FLKFLSMMD---TDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASG 127

Query: 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227
           + +   A    +  +         G  V    T   T   +    S+         +   
Sbjct: 128 A-SIMYALTNKILESFFKQ----LGLNVHAIATPISTGMSISLCLSAARKKYGSNVV--- 179

Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPV---DKEFRADVKAIKKYINR-----NTVLIVG 279
             I P ++H +  KA  +  + +  V            V+ I+  I +     N   ++ 
Sbjct: 180 --IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 237

Query: 280 SAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTS 339
           +   FP    D I E+ ++  ++     ++   G + +     L      F + V  V S
Sbjct: 238 TLTFFPPRNSDDIVEIAKICENYDIPHIIN---GAYAIQNNYYLEKLKKAFKYRVDAVVS 294

Query: 340 ISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399
                 K  L P G  +V   + E  K        + G    +P V              
Sbjct: 295 ---SSDKNLLTPIGGGLVYSTDAEFIKEIS---LSYPGRASATPVVN----------TLV 338

Query: 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFP 431
           +L+S+G + YLE  K      + + + L    
Sbjct: 339 SLLSMGSKNYLELVKNQKNSKKLLDELLNDLS 370

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 38/219 (17%)

Query: 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG--------- 223
           E +V+          EKA G       TSGGT+S  + +  +RD++ +K           
Sbjct: 142 EQKVVNWLCDKYDLSEKADG-----IFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGL 196

Query: 224 -ITRPEMIIPVS--AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINRNT--- 274
                ++ I  S  +H    K+A +  +    +  V  + +   D+  + + I +     
Sbjct: 197 PDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEG 256

Query: 275 ---VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331
                IVG+A    HG ID +  + ++A+ H   +HVD   GG ++         +    
Sbjct: 257 LIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALI---------LSSHK 307

Query: 332 FSVQGV---TSISVDVHKYGLAPKGTSVVLYRNREIRKH 367
             ++GV    SISVD HK          +L  ++   K 
Sbjct: 308 SRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKF 346

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score = 91.7 bits (228), Expect = 4e-20
 Identities = 36/212 (16%), Positives = 79/212 (37%), Gaps = 24/212 (11%)

Query: 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYM----RNKRGITRPE 228
           E   +     ++G   K   G      + GG  S + ++ ++R       + K     P+
Sbjct: 134 EQITLKKMREIVGWSSKDGDGI----FSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPK 189

Query: 229 MIIPVS--AHSAYDKAAQYFNIK---LWRVPVDKEFRADVKAIKKYINRNT------VLI 277
           +++  S  +H +  KA          +  +  ++  +      +  I            +
Sbjct: 190 LVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYV 249

Query: 278 VGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV 337
             +A    +G  DPIQE+ ++   +   LHVD   GG +L  ++K  + +      ++  
Sbjct: 250 NATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLL-MSRKHRHKLNG----IERA 304

Query: 338 TSISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369
            S++ + HK        S +L + + I +   
Sbjct: 305 NSVTWNPHKMMGVLLQCSAILVKEKGILQGCN 336

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score = 91.3 bits (227), Expect = 6e-20
 Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 43/265 (16%)

Query: 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR---NKRGIT-RPE 228
           E EV+    AL+G      G    G    GG+ S + AV  +R        +RG+   P 
Sbjct: 150 EEEVLRKLRALVGWSS---GD---GIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPP 203

Query: 229 MIIPVS--AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINRNT------VLI 277
           + +  S   H +  K A +  +    +  V  D+  +   + +++ I           L+
Sbjct: 204 LALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLV 263

Query: 278 VGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV 337
             ++     G  DP++ + ++   HG  LHVD   GG VL  ++   + +      +Q  
Sbjct: 264 SATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVL-LSQTHRHLLD----GIQRA 318

Query: 338 TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT--------EWSGGL--YVSPTVAG 387
            S++ + HK   A    S +L ++      +             ++           V  
Sbjct: 319 DSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQC 378

Query: 388 SRPGGLIAGA---WAALMSLGQEGY 409
            R           W    + G +G 
Sbjct: 379 GRR----VDCLKLWLMWKAQGDQGL 399

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501

 Score = 90.2 bits (223), Expect = 1e-19
 Identities = 58/343 (16%), Positives = 108/343 (31%), Gaps = 49/343 (14%)

Query: 103 LPRAGLGVGVIEK-LKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPL 161
            P  G     +E  L E    D        G   +G  E     +L+      F H    
Sbjct: 41  CPENGWDESTLELFLHELAIMD---SNNFLGNCGVGEREGRVASALVARRHYRFIHGIGR 97

Query: 162 HLDIF--QSVARFEAEVIAMTAALLGNKEKASGGQVCGN-----MTSGGTESI-LLAVKS 213
             DI   Q  A   + +  +T +L+ +  K +G     N     M +G + ++  L ++ 
Sbjct: 98  SGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRH 157

Query: 214 SRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV---DKEFRADVKAIKKYI 270
            R   +         +I P     +  K+      +   +       E R D+KA++  +
Sbjct: 158 KRPKAK--------YIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV 209

Query: 271 NR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL--G 324
                   + I  +   F   + D ++EL  +  ++     V+   G         +  G
Sbjct: 210 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 269

Query: 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384
             +   D  VQ        + K  + P G +++   N    +              +S  
Sbjct: 270 ARVGRIDAFVQ-------SLDKNFMVPVGGAIIAGFNDSFIQE-------------ISKM 309

Query: 385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
             G             L+SLG  GY +  K   E+   +   +
Sbjct: 310 YPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQI 352

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score = 89.8 bits (223), Expect = 1e-19
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 28/220 (12%)

Query: 173 EAEVIAM--TAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226
           E E+  M   A +LG            Q  G + S  +ES L+A+ ++R     +   + 
Sbjct: 118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSE 177

Query: 227 PE---------MIIPVS--AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT- 274
           P+         ++   S  AHS+ +KA     +K+  +PVD  F    +A++K I  +  
Sbjct: 178 PDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQ 237

Query: 275 -----VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329
                V +  +         D + ELG +    G  LH+D    G       +    +  
Sbjct: 238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAF-LCPEFRGFLKG 296

Query: 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369
               ++   S + +  K+ +     +    +++   +  F
Sbjct: 297 ----IEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTF 332

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 31/221 (14%)

Query: 173 EAEVIAM--TAALLGNKEK---ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227
           E E + M     +L   E       G+  G +    +E+ L+A+ ++R  +  +     P
Sbjct: 113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASP 172

Query: 228 E---------MIIPVS--AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT-- 274
                     ++   S  AHS+ ++A     +KL  +P D +F     A+++ + R+   
Sbjct: 173 GLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAA 232

Query: 275 ----VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG--FVLPFAKKLGYPIP 328
                 +V +         D + E+G +       LHVD    G  F+ P  + L   + 
Sbjct: 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292

Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369
             D       S + + HK+ L     S +  + R      F
Sbjct: 293 FAD-------SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAF 326

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450

 Score = 88.2 bits (218), Expect = 4e-19
 Identities = 35/247 (14%), Positives = 76/247 (30%), Gaps = 34/247 (13%)

Query: 189 KASGGQVCGNMTSGGTESI-LLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247
            +        M +G + ++  L ++  R   +         +I P     +  K+     
Sbjct: 114 HSVASCFVVPMATGMSLTLCFLTLRHKRPKAK--------YIIWPRIDQKSCFKSMVTAG 165

Query: 248 IKLWRVPV---DKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELAL 300
            +   +       E R D+KA++  I      + + +  +   F   + D ++EL  +  
Sbjct: 166 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICA 225

Query: 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
           ++     V+   G         +          V  + +    + K  + P G +++   
Sbjct: 226 NYDIPHVVNNAYGLQSSKCMHLI-----QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGF 280

Query: 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
           N    +              +S    G             L+SLG  GY +  K   E+ 
Sbjct: 281 NEPFIQD-------------ISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMF 327

Query: 421 ESIQKGL 427
             +   L
Sbjct: 328 VYLSTQL 334

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 53/322 (16%), Positives = 105/322 (32%), Gaps = 39/322 (12%)

Query: 73  VNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVG-VIEKLKEEKGKDVV-WQG-K 129
                   +++V+ +++ G    +       P        V++ ++      V  W   K
Sbjct: 18  AEYLENIRERRVLPEVKPG--YLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPK 75

Query: 130 CSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKE- 188
                    S      +++ +  S              +    E  ++     +L     
Sbjct: 76  FHAYFPTANSYP----AIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAE 131

Query: 189 --KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPE---------MIIPVS--A 235
               SGG+  G +    +ES L+A+  ++     +     PE         ++   S  A
Sbjct: 132 FLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191

Query: 236 HSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT------VLIVGSAPGFPHGII 289
           HS+ ++A     +KL R    +  R    A++K I ++          V +         
Sbjct: 192 HSSVERAGLLGGVKL-RSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAF 250

Query: 290 DPIQELGELALSHGTCLHVDLCLGG--FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY 347
           D + E G +   H   +HVD    G  F+ P  + L   I   D       S + + HK+
Sbjct: 251 DYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESAD-------SFNFNPHKW 303

Query: 348 GLAPKGTSVVLYRNREIRKHQF 369
            L     S +  ++     + F
Sbjct: 304 MLVNFDCSAMWLKDPSWVVNAF 325

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382

 Score = 53.2 bits (129), Expect = 6e-08
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 67/192 (34%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY-----FNIKLWRVP 254
           TSG TE+  LA+         K       +++    H +    A++     F ++   +P
Sbjct: 66  TSGATEANNLAIIGYAMRNARKGK----HILVSAVEHMSVINPAKFLQKQGFEVE--YIP 119

Query: 255 VDKEFRADVKAIKKYINRNTVLI--------VGSAPGFPHGIIDPIQELGELALSHGTCL 306
           V K    DV  I + +  +T+L+        +G+        I P++E+ E+       L
Sbjct: 120 VGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGT--------IQPVEEISEVLAGKAA-L 170

Query: 307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HK-YGLAPKG 353
           H+D                       +   V  I VDV            +  YG  PKG
Sbjct: 171 HID-----------------------ATASVGQIEVDVEKIGADMLTISSNDIYG--PKG 205

Query: 354 TSVVLYRNREIR 365
               L+  +E +
Sbjct: 206 VG-ALWIRKEAK 216

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 68/193 (35%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRG--IT-RPEMIIPVSAHSAYDKAAQYFNIKLWRV--- 253
           TSG TES  LA+K + ++ + K    IT + E       H A     +    + + V   
Sbjct: 91  TSGATESDNLAIKGAANFYQKKGKHIITSKTE-------HKAVLDTCRQLEREGFEVTYL 143

Query: 254 PVDKEFRADVKAIKKYINRNTVLI--------VGSAPGFPHGIIDPIQELGELALSHGTC 305
              +    D+K ++  +  +T+L+        +G         +  I  +GE+  + G  
Sbjct: 144 APQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGV--------VQDIAAIGEMCRARGII 195

Query: 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HK-YGLAPK 352
            HVD                       + Q V  + +D+            HK YG  PK
Sbjct: 196 YHVD-----------------------ATQSVGKLPIDLSQLKVDLMSFSGHKIYG--PK 230

Query: 353 GTSVVLYRNREIR 365
           G    LY  R+ R
Sbjct: 231 GIG-ALYVRRKPR 242

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384

 Score = 51.3 bits (124), Expect = 3e-07
 Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 74/197 (37%)

Query: 200 TSGGTESILLAVKS-SRDYMRNKRGI--TRPEMIIPVSAHSAYDKAAQY-----FNIKLW 251
           TS  TESI   +K+ +  + + KR I  T  E       H A  +  +Y     F +K  
Sbjct: 67  TSCATESINWILKTVAETFEKRKRTIITTPIE-------HKAVLETMKYLSMKGFKVK-- 117

Query: 252 RVPVDKEFRADVKAIKKYINRNTVLI--------VGSAPGFPHGIIDPIQELGELALSHG 303
            VPVD      ++ ++K ++ +T L+        VG+        I P++++  +     
Sbjct: 118 YVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGT--------IQPVEDVTRIVKKKN 169

Query: 304 TC--LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HK-YG 348
               +HVD                       +VQ +  I   +            HK +G
Sbjct: 170 KETLVHVD-----------------------AVQTIGKIPFSLEKLEVDYASFSAHKFHG 206

Query: 349 LAPKGTSVVLYRNREIR 365
             PKG   + Y  + + 
Sbjct: 207 --PKGVG-ITYIRKGVP 220

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 30/204 (14%), Positives = 66/204 (32%), Gaps = 39/204 (19%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAH-SAYDKAAQYFNIKLWRVPVD 256
           T+G  E+    + S          + +    +++  + H S+Y  AA+   + +  VP  
Sbjct: 75  TNGAREAKFAVMHS----------LAKKDAWVVMDENCHYSSYV-AAERAGLNIALVPKT 123

Query: 257 --KEFRADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQELGELALSHGTCLHVD 309
              ++    +   + I               +     G +  ++++ ++   +   L V+
Sbjct: 124 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVN 183

Query: 310 LCLGGFVLPF-AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQ 368
                  +P   K++G      DF V    S     HK  +A  G   V+    E  +  
Sbjct: 184 GAYAIGRMPVSLKEIGA-----DFIVG---S----GHK-SMAASGPIGVMGMKEEWAEIV 230

Query: 369 FVAVTEWSGG----LYVSPTVAGS 388
                ++       L  +   A  
Sbjct: 231 LRRSEKYKNKEVELLGCTARGATI 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 30/217 (13%), Positives = 65/217 (29%), Gaps = 50/217 (23%)

Query: 39  VARVLQSFLDAVREKGFKQTFVAF--FMSSIKLVPGV-----NKYIEAEKQKVVDKMQSG 91
           +  +++S L+ +    +++ F     F  S  +   +        I+++   VV+K+   
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK- 413

Query: 92  VKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINE- 150
             S  E    E   +   + +  K+K E                    E   H S+++  
Sbjct: 414 -YSLVEKQPKESTISIPSIYLELKVKLEN-------------------EYALHRSIVDHY 453

Query: 151 ---ACSMFAHTNPLHLD--IFQSVAR--FEAEVIAMTAAL---------LGNKEKASGGQ 194
                       P +LD   +  +       E                 L  K +     
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 195 VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231
                 SG   + L  +K  + Y+ +     + E ++
Sbjct: 514 WNA---SGSILNTLQQLKFYKPYICDNDP--KYERLV 545

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 37/216 (17%), Positives = 59/216 (27%), Gaps = 86/216 (39%)

Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-------------HSAYDKAAQYF 246
           TSGGTES  L + S+      ++ +    +                   H +     ++ 
Sbjct: 84  TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHL 143

Query: 247 NIKL-WRV---PVDKEF-RADVKAIKKYINRNTVLI--------VGSAPGFPHGIIDPIQ 293
                  V   PV K   + +V+ I   +   T L+                 G+I PI 
Sbjct: 144 VEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNET--------GVIMPIS 195

Query: 294 ELGELALSHGTC----------LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVD 343
           E+     +              +H D                       + Q +    VD
Sbjct: 196 EISRRIKALNQIRAASGLPRVLVHTD-----------------------AAQALGKRRVD 232

Query: 344 V------------HK-YGLAPK-GTSVVLYRNREIR 365
           V            HK YG  P+ G    LY     +
Sbjct: 233 VEDLGVDFLTIVGHKFYG--PRIG---ALYVRGVGK 263

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	438
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	100.0
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	100.0
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	100.0
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	100.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	100.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	100.0
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	100.0
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	100.0
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	100.0
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.97
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.96
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.95
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.95
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.95
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.94
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.94
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.94
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.94
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.94
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.93
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.93
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.93
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.93
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.93
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.93
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.93
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.93
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.93
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.93
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.93
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.92
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.92
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.92
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.92
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.92
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.92
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.91
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.91
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.9
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.9
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.9
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.9
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.89
1svv_A	359	Threonine aldolase; structural genomics, structura	99.89
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.89
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.89
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.88
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.88
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.88
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.88
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.87
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.87
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.87
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.87
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.87
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.87
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.87
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.87
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.87
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.87
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.86
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.86
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.86
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.86
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.86
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.86
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.86
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.86
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.86
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.86
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.86
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.86
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.86
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.85
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.85
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.85
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.85
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.85
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.85
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.85
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.85
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.85
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.85
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.85
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.85
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.85
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.85
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.85
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.84
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.84
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.84
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.84
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.84
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.84
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.84
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.84
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.84
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.84
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.84
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.84
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.84
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.84
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.84
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.84
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.84
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.84
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.84
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.84
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.84
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.84
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.84
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.84
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.84
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.83
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.83
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.83
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.83
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.83
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.83
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.83
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.83
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.83
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.82
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.82
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.82
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.82
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.82
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.82
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.82
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.82
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.82
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.82
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.82
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.81
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.81
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.81
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.81
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.81
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.81
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.81
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.81
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.81
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.81
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.8
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.8
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.8
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.8
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.79
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.79
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.79
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.79
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.79
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.79
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.79
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.78
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.78
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.78
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.78
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.78
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.78
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.78
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.78
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.78
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.78
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.77
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.77
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.77
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.77
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.76
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.76
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.76
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.76
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.75
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.75
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.75
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.75
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.75
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.75
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.75
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.6
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.74
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.74
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.74
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.73
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.71
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.71
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.7
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.7
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.7
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.7
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.67
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.67
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.67
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.65
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.64
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.63
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.63
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.63
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.63
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.63
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.62
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.62
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.62
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.61
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.6
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.6
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.59
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.58
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.58
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.58
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.57
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.55
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.55
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.54
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.54
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.54
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.53
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.52
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.51
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.51
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.49
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.49
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.49
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.46
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.42
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.4
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.23
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.21
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	98.8
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.16
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.68

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-46  Score=389.58  Aligned_cols=360  Identities=43%  Similarity=0.772  Sum_probs=300.2

Q ss_pred             cCcchhhHHHHHHHHhhhhhccccccc--cCCCCCCCCCCCCc-HHHHHHHHHHhC--CCCCCC-CCceeeeecCCCCcc
Q 013675           69 LVPGVNKYIEAEKQKVVDKMQSGVKSK--REGWWTELPRAGLG-VGVIEKLKEEKG--KDVVWQ-GKCSGTVYIGGSEAE  142 (438)
Q Consensus        69 ~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lP~~g~~-~~i~~~~~~~~~--~~~~~~-~~~~g~~~~~~~~~~  142 (438)
                      .+|++++++++++.+++.++..++.+.  +.....+||++|++ ++++++++++..  ++..|. |+++|++|+++..  
T Consensus         2 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~--   79 (497)
T 3mc6_A            2 GSPFLRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDD--   79 (497)
T ss_dssp             -----------------------------CCCCCSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHH--
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchH--
Confidence            579999999999999998888877654  34677899999999 999999999843  577777 9999998887644  


Q ss_pred             hHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh
Q 013675          143 GHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK  221 (438)
Q Consensus       143 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~  221 (438)
                       +.+.+.+.+..+.+.|+++++.+|+..++++++++++++++|++ ...     ++++|+|||+|+.+++++++++...+
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~-----~~~~~~ggt~a~~~a~~a~~~~~~~~  153 (497)
T 3mc6_A           80 -LIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTG-----CGTTTSGGTESLLLACLSAKMYALHH  153 (497)
T ss_dssp             -HHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTC-----CEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCC-----eEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence             77888899988888899999999999999999999999999998 232     45999999999999999999877666


Q ss_pred             cCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHH
Q 013675          222 RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL  300 (438)
Q Consensus       222 ~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~  300 (438)
                      +|..+++|+++.++|+++.++++.+|++++.||+++ ++.+|+++|+++|+++|++|++++|+||+|.++|+++|+++|+
T Consensus       154 ~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~  233 (497)
T 3mc6_A          154 RGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQ  233 (497)
T ss_dssp             SCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHH
T ss_pred             CCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHH
Confidence            788788999999999999999999999999999998 8999999999999999999999999999999999999999999


Q ss_pred             HcCCeEEEeccccchhhhhhhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc
Q 013675          301 SHGTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL  379 (438)
Q Consensus       301 ~~~i~lhVD~a~gg~~~pf~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~  379 (438)
                      +||+++|||+||++++.||++..|+. +|++++...|+|++++++||++++|.|+|+++++++.+....+...+.|.++.
T Consensus       234 ~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  313 (497)
T 3mc6_A          234 KYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGL  313 (497)
T ss_dssp             HTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSC
T ss_pred             HhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCC
Confidence            99999999999999999988766652 55788888999999999999999999999999998877776666777888887


Q ss_pred             cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccc
Q 013675          380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLPP  436 (438)
Q Consensus       380 ~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~~  436 (438)
                      +.+++..|+|++..++++|++++.++.+|+++..++..++++++++.|++ +||+++.
T Consensus       314 ~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~  371 (497)
T 3mc6_A          314 YGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIM  371 (497)
T ss_dssp             BCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEEC
T ss_pred             cCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            78888899999999999999999999999999999999999999999999 7988753

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=100.00  E-value=3.7e-43  Score=365.30  Aligned_cols=332  Identities=51%  Similarity=0.952  Sum_probs=299.4

Q ss_pred             CCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHH
Q 013675           97 EGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFE  173 (438)
Q Consensus        97 ~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e  173 (438)
                      ......+|++|.+ ++++++++++ ..+...|. ++++|+++++...   +.+.+.+++..+.+.|++++..+|+..++|
T Consensus        65 ~~~~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~le  141 (514)
T 3mad_A           65 FPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEH---HIAFLNEVYALQSQSNPLHPDLWPSTAKFE  141 (514)
T ss_dssp             SCCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHH---HHHHHHHHHHHHTTCCTTCTTTCHHHHHHH
T ss_pred             cCccCCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCC---HHHHHHHHHHHHhhcCCcccccChHHHHHH
Confidence            3456789999999 9999999987 45566676 8889998876555   677888888888899999999999999999


Q ss_pred             HHHHHHHHHHhCCCC--CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          174 AEVIAMTAALLGNKE--KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~--~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      +++++++++++|++.  +.    ++|++|+|||+|+.+++++++.....++|..+++|+++.++|+++.++++.+|++++
T Consensus       142 ~~l~~~la~~~g~~~~~~~----v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~  217 (514)
T 3mad_A          142 AEVVAMTAHMLGGDAAGGT----VCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLV  217 (514)
T ss_dssp             HHHHHHHHHHTTGGGGTSC----CEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHcCCCCccCC----cceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeE
Confidence            999999999999984  23    577999999999999999999876655677779999999999999999999999999


Q ss_pred             EeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          252 RVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      .||+++++.+|+++|+++|+++|++|++++|+||+|.++|+++|+++|++||+++|+|+||+++..||.+..|.+.++++
T Consensus       218 ~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~  297 (514)
T 3mad_A          218 RTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD  297 (514)
T ss_dssp             EECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS
T ss_pred             EeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888887667788


Q ss_pred             cCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHH
Q 013675          332 FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLE  411 (438)
Q Consensus       332 ~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~  411 (438)
                      +...|+|++++++||++++|.|+|+++++++......+....+|.++.+..++..|++++..++++|+++..++.+++++
T Consensus       298 ~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~  377 (514)
T 3mad_A          298 FRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLD  377 (514)
T ss_dssp             TTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHH
Confidence            88999999999999999999999999999988777776677788888777788889999988889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCccc
Q 013675          412 NTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       412 ~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++..++++++.+.|+++|++++
T Consensus       378 ~~~~~~~~~~~l~~~L~~~~g~~~  401 (514)
T 3mad_A          378 ATRRILQAADRLKAGVRAIPSLKI  401 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred             HHHHHHHHHHHHHHHHhhCCCeEE
Confidence            999999999999999999988765

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=100.00  E-value=5.6e-43  Score=361.07  Aligned_cols=328  Identities=19%  Similarity=0.179  Sum_probs=267.7

Q ss_pred             cCCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHH
Q 013675           96 REGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARF  172 (438)
Q Consensus        96 ~~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~  172 (438)
                      +...+.++|++|.+ +++++++.+. .++...|+ |++.|+++.+..    .+.++.+++....+.|...++.+|+..++
T Consensus        44 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~~~~p~~~~l  119 (481)
T 4e1o_A           44 RAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTS----WPSLLGDMLADAINCLGFTWASSPACTEL  119 (481)
T ss_dssp             GGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCC----HHHHHHHHHHHHHCCCCSSTTTCHHHHHH
T ss_pred             HHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCC----HHHHHHHHHHHHhCcccCCcCCCcHHHHH
Confidence            34566789999999 9999999997 67888888 999999866554    46788888888889999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC----CCCccceeEcCChHHHHHHHHHHHHHHHHHh---cCC--------CCCeEEecCCCcC
Q 013675          173 EAEVIAMTAALLGNKEKA----SGGQVCGNMTSGGTESILLAVKSSRDYMRNK---RGI--------TRPEMIIPVSAHS  237 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~----~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~---~G~--------~~~~Viv~~~~h~  237 (438)
                      |+++.+|+++++|.+...    +.+.-.|++|+|||+||++|+.++|++...+   .|.        ++++|+++..+|+
T Consensus       120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~  199 (481)
T 4e1o_A          120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHS  199 (481)
T ss_dssp             HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCH
T ss_pred             HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchH
Confidence            999999999999998541    0001167999999999999999999865321   010        2368999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccC------cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675          238 AYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a  311 (438)
                      ++.+++++.|++++.||+++++++|+++|+++|+++      |++|++++++|++|.++|+++|+++|++||+|+|||+|
T Consensus       200 s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA  279 (481)
T 4e1o_A          200 SVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAA  279 (481)
T ss_dssp             HHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECT
T ss_pred             HHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehh
Confidence            999999999999999999989999999999999865      78999999999999999999999999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCC---ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC-------ccC
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQG---VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG-------LYV  381 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~g---vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~-------~~~  381 (438)
                      ||++.+.        .|.++....|   +|++++++|||+++|+|+|+++++++......+...+.|...       .+.
T Consensus       280 ~g~~~~~--------~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~  351 (481)
T 4e1o_A          280 YAGTAFL--------CPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFM  351 (481)
T ss_dssp             TGGGGGG--------SGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGG
T ss_pred             hHHHHHh--------ChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcc
Confidence            9987653        1223333345   499999999999999999999999887644332222222111       122


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      ..++.++|.. ...++|++++.+|.+|+++++++..++++++++.|+++|++++.
T Consensus       352 ~~~~~~~r~~-~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  405 (481)
T 4e1o_A          352 HWQIPLSRRF-RSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIP  405 (481)
T ss_dssp             GGSSSSCCCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECC
T ss_pred             cccccCCCCc-cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence            3355566553 34599999999999999999999999999999999999998763

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=100.00  E-value=1.3e-42  Score=357.65  Aligned_cols=327  Identities=16%  Similarity=0.135  Sum_probs=260.0

Q ss_pred             cCCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHH
Q 013675           96 REGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARF  172 (438)
Q Consensus        96 ~~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~  172 (438)
                      +...+.++|++|.+ +++++++.+. .++...|+ |+++|+++.+..    ..+++.+++....+.|...++.+|+..++
T Consensus        39 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~l~~~~n~~~~~~~~~p~~~~l  114 (475)
T 3k40_A           39 KPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANS----YPAIVADMLSGAIACIGFTWIASPACTEL  114 (475)
T ss_dssp             GGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCC----HHHHHHHHHHHHHCCCSSSCCCCHHHHHH
T ss_pred             HHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCc----HHHHHHHHHHHHhCccccCccCCcHHHHH
Confidence            34567789999999 9999999997 67888888 999999866554    46788888888889999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC---CCCccceeEcCChHHHHHHHHHHHHHHHHHh-----cCC------CCCeEEecCCCcCc
Q 013675          173 EAEVIAMTAALLGNKEKA---SGGQVCGNMTSGGTESILLAVKSSRDYMRNK-----RGI------TRPEMIIPVSAHSA  238 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~---~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~-----~G~------~~~~Viv~~~~h~s  238 (438)
                      |+++++|+++++|.+...   +++.-.|++|+|||+||++|+.++|++...+     +++      .+++|+++..+|++
T Consensus       115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s  194 (475)
T 3k40_A          115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSS  194 (475)
T ss_dssp             HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHH
T ss_pred             HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHH
Confidence            999999999999998531   0000157999999999999999998765321     111      12579999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccC------cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675          239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~  312 (438)
                      +.+++++.|++++.||+++++ +|+++|+++|+++      |++|++++++|++|.++|+++|+++|++||+|+|||+||
T Consensus       195 ~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~  273 (475)
T 3k40_A          195 VERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAY  273 (475)
T ss_dssp             HHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHh
Confidence            999999999999999999899 9999999999865      788999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCC---ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC-----CC--ccCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQG---VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS-----GG--LYVS  382 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~g---vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~-----g~--~~~~  382 (438)
                      |++.+.        .|.+.....|   +|++++++|||+++|.|+|+++++++......+...+.|.     +.  .+..
T Consensus       274 ~~~~~~--------~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~  345 (475)
T 3k40_A          274 AGSAFI--------CPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRH  345 (475)
T ss_dssp             GGGGGG--------SGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC------------------------
T ss_pred             HHHHHh--------CHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCccc
Confidence            987552        1122222334   5999999999999999999999998876443222222221     11  1233


Q ss_pred             CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          383 PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       383 ~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      .++.++|+. ..+++|++++.+|.+|+++++++..++++++++.|+++|++++.
T Consensus       346 ~~~~~sr~~-~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~  398 (475)
T 3k40_A          346 WQIPLGRRF-RALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA  398 (475)
T ss_dssp             ---CCCGGG-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred             ccccCCCcc-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            455566653 35699999999999999999999999999999999999998763

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=100.00  E-value=1e-41  Score=353.95  Aligned_cols=321  Identities=16%  Similarity=0.137  Sum_probs=266.4

Q ss_pred             CCCCCCCCCCc-HHHHHHHHHHhCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHH
Q 013675           99 WWTELPRAGLG-VGVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV  176 (438)
Q Consensus        99 ~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~  176 (438)
                      ...++|++|.+ ++++++++++......|+ |+++|+++.+..    ...++.+++....+.|...|..+|+..++|+++
T Consensus        65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~~~~~----~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~  140 (511)
T 3vp6_A           65 FNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLD----IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQIT  140 (511)
T ss_dssp             BCCCCCSSCCCHHHHHHHHHHHHHTSCCTTSTTEESSSSCCCC----HHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCceEeecCCCc----HHHHHHHHHHHHhccCCCCcccCchHHHHHHHH
Confidence            67789999999 999999998855555566 999999865544    578888898888899999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH---HhcCC---CCCeEEecCCCcCcHHHHHhhcCc--
Q 013675          177 IAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR---NKRGI---TRPEMIIPVSAHSAYDKAAQYFNI--  248 (438)
Q Consensus       177 ~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~---~~~G~---~~~~Viv~~~~h~s~~~a~~~~Gi--  248 (438)
                      ++|+++++|++.+.    -.|++|+|||+|+..++.++++...   .++|+   ++++|+++..+|+++.++++.+|+  
T Consensus       141 ~~~l~~~~g~~~~~----~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~  216 (511)
T 3vp6_A          141 LKKMREIVGWSSKD----GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT  216 (511)
T ss_dssp             HHHHHHHHTCCSSS----CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred             HHHHHHHhCCCCCC----CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCC
Confidence            99999999998532    1669999999999999999987531   12332   346899999999999999999998  


Q ss_pred             -EEEEeeCCCCCccCHHHHHHhhccC------cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          249 -KLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       249 -~v~~v~~~~~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                       +++.||+++++.+|+++|+++|+++      |++|++++|+|++|.++|+++|+++|++||+|+|||+||+++.++   
T Consensus       217 ~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~---  293 (511)
T 3vp6_A          217 DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLM---  293 (511)
T ss_dssp             GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGG---
T ss_pred             CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhh---
Confidence             9999999999999999999999875      899999999999999999999999999999999999999998774   


Q ss_pred             hcCCCCCCCccCCC---CccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC---------ccCCCCccCCC
Q 013675          322 KLGYPIPPFDFSVQ---GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG---------LYVSPTVAGSR  389 (438)
Q Consensus       322 ~~g~~~p~~~~~~~---gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~---------~~~~~~~~gsr  389 (438)
                           .|+++....   ++|++++++|||+++|.|+|+++++++...+..+...+.|...         .+...++.++|
T Consensus       294 -----~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r  368 (511)
T 3vp6_A          294 -----SRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGR  368 (511)
T ss_dssp             -----CTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSC
T ss_pred             -----ChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCC
Confidence                 334444444   4599999999999999999999999887654433222333211         11223455565


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      +. .++++|++++.+|.+|+++++++..++++++++.|+++|++++.
T Consensus       369 ~~-~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~  414 (511)
T 3vp6_A          369 HV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMV  414 (511)
T ss_dssp             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEES
T ss_pred             ch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            54 34599999999999999999999999999999999999998764

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=100.00  E-value=1.1e-40  Score=341.22  Aligned_cols=324  Identities=21%  Similarity=0.323  Sum_probs=263.5

Q ss_pred             CCCCCCCCCCCCc-HHHHHHHHHHh--CCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHH
Q 013675           97 EGWWTELPRAGLG-VGVIEKLKEEK--GKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARF  172 (438)
Q Consensus        97 ~~~~~~lP~~g~~-~~i~~~~~~~~--~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~  172 (438)
                      .....+||++|++ ++++++++++.  ++...++ +.+.+ .+   ..     ..+.+++...++.|+.++..+|+..++
T Consensus        12 ~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~-~~---~~-----~~v~e~~~~a~~~~~~~~~~~~~~~~l   82 (452)
T 2dgk_A           12 IAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ-TW---DD-----ENVHKLMDLSINKNWIDKEEYPQSAAI   82 (452)
T ss_dssp             ---CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC-CC---CC-----HHHHHHHHHTTTCBTTCTTTCHHHHHH
T ss_pred             hccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC-CC---ch-----HHHHHHHHHHhccCCCChhhChhHHHH
Confidence            4556789999999 99999999974  4555565 55443 11   11     245677777778888888999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH---hcCC--CCCeEEecCCCcCcHHHHHhhcC
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRGI--TRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G~--~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      ++++++++++++|++.++. ++..|++|+|||+|+.++++++++....   .+|.  ++++|+++. .|+++.++++.+|
T Consensus        83 ~~~~~~~la~l~g~~~~~~-~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G  160 (452)
T 2dgk_A           83 DLRCVNMVADLWHAPAPKN-GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD  160 (452)
T ss_dssp             HHHHHHHHHHHTTCCCCTT-SCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCcccc-cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC
Confidence            9999999999999986410 0013699999999999999998764321   2453  246999999 9999999999999


Q ss_pred             cEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc------CCeEEEeccccchhhhhh
Q 013675          248 IKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH------GTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       248 i~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~------~i~lhVD~a~gg~~~pf~  320 (438)
                      ++++.||+++ ++.+|+++|+++|+++|++|++++|+|+||.++|+++|+++|+++      |+|+|||+||++++.||+
T Consensus       161 ~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~  240 (452)
T 2dgk_A          161 VELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV  240 (452)
T ss_dssp             CEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred             ceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhh
Confidence            9999999987 799999999999999999999999999999999999999999996      999999999999988764


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                      ...   . ++++...++|++++++|||+++|.++|+++++++......+...+.|.++.+...+..++|++...+++|++
T Consensus       241 ~~~---~-~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aa  316 (452)
T 2dgk_A          241 APD---I-VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYE  316 (452)
T ss_dssp             CTT---C-CCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHH
T ss_pred             Ccc---c-hhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHH
Confidence            321   1 355566789999999999999999999999988765433444445666554444567889998778899999


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++.+|.+|++++.++..++++++.+.|++++++++
T Consensus       317 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~  351 (452)
T 2dgk_A          317 FLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF  351 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEE
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            99999999999999999999999999999988765

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=100.00  E-value=4e-40  Score=340.08  Aligned_cols=327  Identities=15%  Similarity=0.150  Sum_probs=257.0

Q ss_pred             CCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHH
Q 013675           97 EGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFE  173 (438)
Q Consensus        97 ~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e  173 (438)
                      ...+.++|++|.+ +++++++++. .++...|+ |++.|++..+..    ....+.+++..+.+.|..++..+|...++|
T Consensus        40 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~~~~~~~~~le  115 (486)
T 1js3_A           40 PLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASS----YPAMLADMLCGAIGCIGFSWAASPACTELE  115 (486)
T ss_dssp             GGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCC----HHHHHHHHHHHHHCCCCSSGGGCHHHHHHH
T ss_pred             HhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCCCCC----HHHHHHHHHHHHhCcCccccccChhHHHHH
Confidence            4556788999999 9999999996 56777786 899998755444    577888888888888888899999999999


Q ss_pred             HHHHHHHHHHhCCCCCCC---CCccceeEcCChHHHHHHHHHHHHHHHHHh---c-CC-------CCCeEEecCCCcCcH
Q 013675          174 AEVIAMTAALLGNKEKAS---GGQVCGNMTSGGTESILLAVKSSRDYMRNK---R-GI-------TRPEMIIPVSAHSAY  239 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~---~~~v~g~~t~ggt~a~~~al~a~~~~~~~~---~-G~-------~~~~Viv~~~~h~s~  239 (438)
                      +++++|+++++|++.+..   ++.-.|++|+|||+|+++++.++++....+   + |-       ++..|+++..+|+++
T Consensus       116 ~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~  195 (486)
T 1js3_A          116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSV  195 (486)
T ss_dssp             HHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHH
T ss_pred             HHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHH
Confidence            999999999999985310   000156999999999999999988643210   1 20       012378899999999


Q ss_pred             HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCc------EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675          240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT------VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t------~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g  313 (438)
                      .++++.+|++++.||+++++.+|+++|+++|+++|      .+|++++|+|++|.++|+++|+++|++||+|+|||+|||
T Consensus       196 ~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g  275 (486)
T 1js3_A          196 ERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYA  275 (486)
T ss_dssp             HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTG
T ss_pred             HHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhH
Confidence            99999999999999998899999999999998766      499999999999999999999999999999999999999


Q ss_pred             chhhhhhhhcCCCCCCCcc---CCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC---------ccC
Q 013675          314 GFVLPFAKKLGYPIPPFDF---SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG---------LYV  381 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~---~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~---------~~~  381 (438)
                      ++.++        .|.+..   ...++|++++++|||+++|.|+|+++++++......+...+.|..+         .+.
T Consensus       276 ~~~~~--------~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~  347 (486)
T 1js3_A          276 GSAFI--------CPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYR  347 (486)
T ss_dssp             GGGGG--------STTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGG
T ss_pred             HHHHH--------CHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCcc
Confidence            87753        112221   2346899999999999999999999999876432222111222111         112


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      ..++.++|... .+++|++++.+|.+|+++..++..++++++.+.|+++|++++.
T Consensus       348 ~~~~~~~rr~~-~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  401 (486)
T 1js3_A          348 HWQLPLGRRFR-SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVC  401 (486)
T ss_dssp             GSSSCSCCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEC
T ss_pred             ccCCCCCCchh-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence            22334444432 3499999999999999999999999999999999999998763

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=100.00  E-value=5.4e-39  Score=333.20  Aligned_cols=319  Identities=15%  Similarity=0.137  Sum_probs=255.7

Q ss_pred             CCCCCCCCCCc-HHHHHHHHHHhC-CCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHH
Q 013675           99 WWTELPRAGLG-VGVIEKLKEEKG-KDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV  176 (438)
Q Consensus        99 ~~~~lP~~g~~-~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~  176 (438)
                      .+.++|++|.+ +++++++++... ....|++++.++++.+..    ...++.+++..+.+.|...++.+|...++|.++
T Consensus        62 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~  137 (504)
T 2okj_A           62 FNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLD----IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQIT  137 (504)
T ss_dssp             BCCCCCSSCCCHHHHHHHHHHHHHTSCCTTCTTEESSSSCCCC----HHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCEEEEccCCCC----HHHHHHHHHHHhhccCCCchhhChHHHHHHHHH
Confidence            56789999999 999999988744 334456888887755444    466777888888899988899999999999999


Q ss_pred             HHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHH---HhcCC---CCCeEEecCCCcCcHHHHHhhcCc-
Q 013675          177 IAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMR---NKRGI---TRPEMIIPVSAHSAYDKAAQYFNI-  248 (438)
Q Consensus       177 ~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~---~~~G~---~~~~Viv~~~~h~s~~~a~~~~Gi-  248 (438)
                      ++|+++++|++. ..     .|++|+|||+|+++++++++++..   .++|.   ++.+|+++..+|+++.++++.+|+ 
T Consensus       138 ~~~la~~~g~~~~~~-----~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g  212 (504)
T 2okj_A          138 LKKMREIVGWSSKDG-----DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFG  212 (504)
T ss_dssp             HHHHHHHHTCCSSSC-----EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSC
T ss_pred             HHHHHHHhCCCCCCC-----CEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCC
Confidence            999999999984 22     569999999999999999986421   11332   123799999999999999999987 


Q ss_pred             --EEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          249 --KLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       249 --~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                        +++.||+++++++|+++|+++|++      +|++|++++|+|++|.++|+++|+++|++||+|+|||+||+++.++  
T Consensus       213 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~--  290 (504)
T 2okj_A          213 TDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLM--  290 (504)
T ss_dssp             GGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGG--
T ss_pred             cccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHh--
Confidence              899999988999999999999986      5899999999999999999999999999999999999999998764  


Q ss_pred             hhcCCCCCCCccC---CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC-C-c-------cCCCCccCC
Q 013675          321 KKLGYPIPPFDFS---VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG-G-L-------YVSPTVAGS  388 (438)
Q Consensus       321 ~~~g~~~p~~~~~---~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g-~-~-------~~~~~~~gs  388 (438)
                            .+.++..   ..++|++++++|||+++|.|+|+++++++++....+...+.|.. + .       +...+++++
T Consensus       291 ------~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  364 (504)
T 2okj_A          291 ------SRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCG  364 (504)
T ss_dssp             ------CTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSS
T ss_pred             ------CHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCC
Confidence                  1122222   23679999999999988999999999987654432222233321 1 0       112233444


Q ss_pred             -CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          389 -RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       389 -r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                       |.+++  ++|++++.+|.+|++++.++..++++++.+.|+++|++++.
T Consensus       365 rr~~~l--~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  411 (504)
T 2okj_A          365 RHVDIF--KFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMV  411 (504)
T ss_dssp             CBCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEES
T ss_pred             CCccHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence             44443  89999999999999999999999999999999999888753

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=100.00  E-value=9.4e-39  Score=332.27  Aligned_cols=318  Identities=19%  Similarity=0.212  Sum_probs=252.3

Q ss_pred             CCCCCCCCCCc-HHHHHHHHHHhCC-CCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHH
Q 013675           99 WWTELPRAGLG-VGVIEKLKEEKGK-DVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV  176 (438)
Q Consensus        99 ~~~~lP~~g~~-~~i~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~  176 (438)
                      ...++|++|.+ ++++++++++... ...|++++.+++..+..    ...++.+++..+.+.+...++.+|+..++|.++
T Consensus        78 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~  153 (515)
T 2jis_A           78 LDLELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLD----PHALAGRIITESLNTSQYTYEIAPVFVLMEEEV  153 (515)
T ss_dssp             HCCCCCSSCCCHHHHHHHHHHHHHHSCCTTSTTEESSSCCCCC----HHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCeEEEeeCCCC----HHHHHHHHHHHHhccCCCchhhchHHHHHHHHH
Confidence            45779999999 9999999987443 33345778777665444    356667888877788888899999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH---HhcCC---CCCeEEecCCCcCcHHHHHhhcCc--
Q 013675          177 IAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR---NKRGI---TRPEMIIPVSAHSAYDKAAQYFNI--  248 (438)
Q Consensus       177 ~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~---~~~G~---~~~~Viv~~~~h~s~~~a~~~~Gi--  248 (438)
                      ++|+++++|++.+      .|++|+|||+|+++++++++++..   ..+|.   .+.+|+++..+|+++.++++.+|+  
T Consensus       154 ~~~la~l~g~~~~------~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~  227 (515)
T 2jis_A          154 LRKLRALVGWSSG------DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGT  227 (515)
T ss_dssp             HHHHHHHHTCSSC------EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred             HHHHHHHhCCCCC------CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCC
Confidence            9999999999844      559999999999999999986431   11341   123899999999999999999998  


Q ss_pred             -EEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          249 -KLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       249 -~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                       +++.||+++++.+|+++|+++|++      +|++|++++|+|++|.++|+++|+++|++||+|+|||++|+++.++   
T Consensus       228 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~---  304 (515)
T 2jis_A          228 DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLL---  304 (515)
T ss_dssp             GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGG---
T ss_pred             CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHh---
Confidence             999999998999999999999986      4899999999999999999999999999999999999999998875   


Q ss_pred             hcCCCCCCCccCC---CCccEEEeCCCCCCCCCCCcEEEEEecc-cccccchhcccccC-CC--------ccCCCCcc-C
Q 013675          322 KLGYPIPPFDFSV---QGVTSISVDVHKYGLAPKGTSVVLYRNR-EIRKHQFVAVTEWS-GG--------LYVSPTVA-G  387 (438)
Q Consensus       322 ~~g~~~p~~~~~~---~gvdsis~s~hK~~~~p~g~g~l~~r~~-~~~~~~~~~~~~~~-g~--------~~~~~~~~-g  387 (438)
                           .+.+....   .++|++++++|||+++|.|+|+++++++ ++.+..+...+.|. ++        .+...++. +
T Consensus       305 -----~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~  379 (515)
T 2jis_A          305 -----SQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCG  379 (515)
T ss_dssp             -----CTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSS
T ss_pred             -----ChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCC
Confidence                 22232222   3679999999999989999999999987 54432221122221 11        11222333 4


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      +|.+++  ++|++++.+|.+|++++.++..++++++.+.|+++|++++.
T Consensus       380 rr~~al--~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  426 (515)
T 2jis_A          380 RRVDCL--KLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELV  426 (515)
T ss_dssp             CCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred             CcccHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            455544  89999999999999999999999999999999999988753

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=100.00  E-value=3.3e-38  Score=327.02  Aligned_cols=324  Identities=21%  Similarity=0.319  Sum_probs=265.8

Q ss_pred             CCCCCCCCCCCc-HHHHHHHHHHh--CCCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHH
Q 013675           98 GWWTELPRAGLG-VGVIEKLKEEK--GKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEA  174 (438)
Q Consensus        98 ~~~~~lP~~g~~-~~i~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~  174 (438)
                      .....+|++|.+ +++.+.+++..  .++.    .+..+.+.....    ...+.+++...++.|..+++.+|...++|+
T Consensus        27 lp~~~~p~~~~~~~~~~~~~~~~i~l~gnp----~~~l~s~~t~~~----~~~v~~~l~~~~~~~~~~~~~~p~~~~le~   98 (502)
T 3hbx_A           27 LPRFKMPENSIPKEAAYQIINDELMLDGNP----RLNLASFVTTWM----EPECDKLIMSSINKNYVDMDEYPVTTELQN   98 (502)
T ss_dssp             CCSSSCCSSCCCHHHHHHHHHHHGGGSCCG----GGBTTCCSCCCC----CHHHHHHHHHTTTCBTTCTTTCHHHHHHHH
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHhccCCCC----CceeccccCCCC----CHHHHHHHHHHhccCCCChhcChhHHHHHH
Confidence            445589999999 99999998863  3332    211111111111    123556666667778888888999999999


Q ss_pred             HHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHH---hcC--CCCCeEEecCCCcCcHHHHHhhcC
Q 013675          175 EVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRG--ITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       175 ~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G--~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      ++++++++++|++  +++   .+.|++|+|||+|+++++.+++.....   .+|  ..+++|+++..+|+++.++++++|
T Consensus        99 ~~~~~la~l~g~~~~~~~---~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G  175 (502)
T 3hbx_A           99 RCVNMIAHLFNAPLEEAE---TAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFE  175 (502)
T ss_dssp             HHHHHHHHHTTCCCCSSC---CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCccccc---CCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcC
Confidence            9999999999998  332   246788999999999999998764322   124  234599999999999999999999


Q ss_pred             cEEEEeeCCCC-CccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc------CCeEEEeccccchhhhhh
Q 013675          248 IKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH------GTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       248 i~v~~v~~~~~-~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~------~i~lhVD~a~gg~~~pf~  320 (438)
                      ++++.||++++ +.+|+++|+++|+++|++|++++|+|++|.++|+++|+++|+++      |+|+|||+||++++.||.
T Consensus       176 ~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~  255 (502)
T 3hbx_A          176 VELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFL  255 (502)
T ss_dssp             CEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred             ceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhh
Confidence            99999999875 99999999999999999999999999999999999999999999      999999999999988765


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                      ...   . ++++...++|++++++|||+++|.|+|++++++++.....+...+.|.++......+.++|++..++++|++
T Consensus       256 ~~~---~-~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~a  331 (502)
T 3hbx_A          256 YPE---L-EWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQ  331 (502)
T ss_dssp             CTT---C-CCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHH
T ss_pred             Ccc---c-ccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHH
Confidence            321   1 456667899999999999999999999999998877665555566777766555667789998888899999


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      ++.+|.+|+.++.++..++++++++.|++++++++.
T Consensus       332 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  367 (502)
T 3hbx_A          332 LIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIV  367 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            999999999999999999999999999999888763

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=3.9e-37  Score=318.67  Aligned_cols=314  Identities=19%  Similarity=0.248  Sum_probs=248.1

Q ss_pred             CCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHH
Q 013675          102 ELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIA  178 (438)
Q Consensus       102 ~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~  178 (438)
                      ++|++|.+ +++++++.+. .++...|. +.+.++...+..    ...++.+.+....+.|...+..+|...++|+++++
T Consensus        72 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~----~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~  147 (497)
T 2qma_A           72 DLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPL----MPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVN  147 (497)
T ss_dssp             CSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCB----HHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCc----HHHHHHHHHHHhhcccccchhhChHHHHHHHHHHH
Confidence            57999999 9999999875 67777787 788888766544    45666666666667777778889999999999999


Q ss_pred             HHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH--------hcCCC---CC-eEEecCCCcCcHHHHHhhc
Q 013675          179 MTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN--------KRGIT---RP-EMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       179 ~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~--------~~G~~---~~-~Viv~~~~h~s~~~a~~~~  246 (438)
                      |+++++|+++..     .|++|+|||+|+.++++++|++...        .+|..   .+ +|+++...|+++.++++.+
T Consensus       148 ~la~~~g~~~~~-----~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~  222 (497)
T 2qma_A          148 WLCDKYDLSEKA-----DGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWM  222 (497)
T ss_dssp             HHHHHTTCCTTC-----EEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHT
T ss_pred             HHHHHhCCCCCC-----CeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHc
Confidence            999999997644     5699999999999999998865331        13322   14 7999999999999999999


Q ss_pred             Cc---EEEEeeCCCCCccCHHHHHHhhccC------cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          247 NI---KLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       247 Gi---~v~~v~~~~~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      |+   +++.||+++++.+|+++|+++|+++      +.+|++++++|++|.++|+++|+++|++||+|+|||++|+++..
T Consensus       223 g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~  302 (497)
T 2qma_A          223 GLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALI  302 (497)
T ss_dssp             TSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred             CCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHH
Confidence            87   8999999989999999999999764      45899999999999999999999999999999999999999887


Q ss_pred             hhhhhcCCCCCCCccCC---CCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC------CccCCCCccCC
Q 013675          318 PFAKKLGYPIPPFDFSV---QGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG------GLYVSPTVAGS  388 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~---~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g------~~~~~~~~~gs  388 (438)
                      +.         ++....   .++|++++|+|||+++|.++|+++++++...+. +.....|..      ..+...++.++
T Consensus       303 ~~---------~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~-~~~~~~yl~~~~~~~~~~~~~~~~~~  372 (497)
T 2qma_A          303 LS---------SHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKF-LLHHADYLNREHDELPNLVDKSIATT  372 (497)
T ss_dssp             GS---------TTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGG-GCC--------------------CCS
T ss_pred             hC---------cchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHH-hcCCchhcCCccccCCCccccCCCCC
Confidence            52         122112   357999999999999999999999998764432 111122211      11122233455


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      |... ..++|++++.+|.+|++++.++..++++++.+.|+++|++++
T Consensus       373 r~~~-al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~  418 (497)
T 2qma_A          373 KRFD-ALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFEL  418 (497)
T ss_dssp             CCCT-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             Cchh-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            5433 238999999999999999999999999999999999988875

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.4e-33  Score=281.37  Aligned_cols=317  Identities=28%  Similarity=0.464  Sum_probs=253.3

Q ss_pred             CCCCCCCc-HHHHHHHHHHhCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHH
Q 013675          102 ELPRAGLG-VGVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAM  179 (438)
Q Consensus       102 ~lP~~g~~-~~i~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~  179 (438)
                      .||+.|.+ +++++.+.++......|. +.+.|.......+      .+.+++...+..+..++...++..+++.+++++
T Consensus         4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~   77 (397)
T 3f9t_A            4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLP------ITRKIVDIFLETNLGDPGLFKGTKLLEEKAVAL   77 (397)
T ss_dssp             SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCCCCT------HHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCCCcH------HHHHHHHHHHhhcCCCcccChhHHHHHHHHHHH
Confidence            58999999 999999999877666666 6777776443333      234555555555555666677889999999999


Q ss_pred             HHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh--cCC---CCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          180 TAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK--RGI---TRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       180 ~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~--~G~---~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      +++++|.++++    +  ++|+|||+|+.+++++++.....+  .|.   ..++|+++.++|+++.++++..|++++.+|
T Consensus        78 la~~~~~~~~~----i--~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~  151 (397)
T 3f9t_A           78 LGSLLNNKDAY----G--HIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAP  151 (397)
T ss_dssp             HHHHTTCTTCE----E--EEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEEC
T ss_pred             HHHHhCCCCCC----E--EEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEe
Confidence            99999998765    5  899999999999999988642211  010   138999999999999999999999999999


Q ss_pred             CCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC----CC
Q 013675          255 VDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI----PP  329 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~----p~  329 (438)
                      +++++.+|+++|++++++ ++++|++++|+||+|.++|+++|.++|++||+++|+|++|+++..++... +...    .+
T Consensus       152 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~-~~~~~~~~~~  230 (397)
T 3f9t_A          152 IKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDD-KYKKKGVNYK  230 (397)
T ss_dssp             BCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCG-GGCCTTCCCC
T ss_pred             eCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccc-cccccccccc
Confidence            999999999999999999 99999999999999999999999999999999999999999988775432 1111    14


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHH
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGY  409 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~  409 (438)
                      +++.. ++|++++++||++.+|.++|+++++++.+.+......+.+.++.  .....|++++..++++++++..++..++
T Consensus       231 ~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~  307 (397)
T 3f9t_A          231 FDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETR--QATILGTRVGFGGACTYAVLRYLGREGQ  307 (397)
T ss_dssp             CSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCEECTTSSSSE--ECSSCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhccCCccccCCC--ccccccccccchHHHHHHHHHHHhHHHH
Confidence            56666 89999999999988899999999988765533211112222211  2344578888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          410 LENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++..++..++++++.+.|+++ ++++
T Consensus       308 ~~~~~~~~~~~~~l~~~L~~~-g~~~  332 (397)
T 3f9t_A          308 RKIVNECMENTLYLYKKLKEN-NFKP  332 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCEE
Confidence            999999999999999999988 6653

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=100.00  E-value=3.4e-33  Score=281.14  Aligned_cols=295  Identities=15%  Similarity=0.121  Sum_probs=222.0

Q ss_pred             CCCCCCCCc-HHHHHHHHHH-hCCCCCC---------CCCceee--------eecCCCCcchHHHHHHHHHHHhhccCCC
Q 013675          101 TELPRAGLG-VGVIEKLKEE-KGKDVVW---------QGKCSGT--------VYIGGSEAEGHFSLINEACSMFAHTNPL  161 (438)
Q Consensus       101 ~~lP~~g~~-~~i~~~~~~~-~~~~~~~---------~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~n~~  161 (438)
                      ..+|++|++ ++|...++++ .....+|         +|+++|.        .+++..       ...+++    ..|+ 
T Consensus        21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~~-------~~~d~l----~~~~-   88 (450)
T 3bc8_A           21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIG-------RSGDIS----AVQP-   88 (450)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBC-------C-----------CC-
T ss_pred             ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecchh-------HHHHHH----HhCc-
Confidence            349999999 9999999987 3344455         3677766        334321       112222    2366 


Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChH-HHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT-ESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt-~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      .+..+|+..++|+.+..|+.+++|.+...     .|++++|+| .++.+++.++|...  .+|   +.|+++..+|.|+.
T Consensus        89 ~~~~~~~~~~~e~~~~~~~~~~lGlp~~~-----~~~lV~GaT~~~~a~~L~aar~~~--~~~---~~viv~r~aHkSv~  158 (450)
T 3bc8_A           89 KAAGSSLLNKITNSLVLNVIKLAGVHSVA-----SCFVVPMATGMSLTLCFLTLRHKR--PKA---KYIIWPRIDQKSCF  158 (450)
T ss_dssp             SBHHHHHHHHHHHHHHHHHHHHHTCTTCC-----EEEEESSCHHHHHHHHHHHHHHHC--TTC---CEEEEECCCCHHHH
T ss_pred             cccCCcHHHHHHHHHHHHHHHhCCCCCCc-----eEEEECCHHHHHHHHHHHHcchhh--cCC---CEEEEECCcHHHHH
Confidence            67788899999999999999999998775     679999998 66666666666521  124   78999999999999


Q ss_pred             HHHhhcCcEEEEeeC---CCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675          241 KAAQYFNIKLWRVPV---DKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~---~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +++.+.|++.+.|+.   ++.+.+|+++|+++|++    ++.+|+.+.+++.+|.+||+++|+++|++||+|+|||+|||
T Consensus       159 kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G  238 (450)
T 3bc8_A          159 KSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYG  238 (450)
T ss_dssp             HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTT
T ss_pred             HHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCc
Confidence            999999999988876   45789999999999965    45667776666667799999999999999999999999999


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      +....+ ..    .|.-.+...++|+++.|+|||+++|.|+|++++|+++..+..   ...|.+          +...+.
T Consensus       239 ~~~~~~-~~----l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~---~~~~~g----------~~s~Sp  300 (450)
T 3bc8_A          239 LQSSKC-MH----LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI---SKMYPG----------RASASP  300 (450)
T ss_dssp             TTCHHH-HH----HHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH---HHHSCS----------CBCSHH
T ss_pred             hhhhhh-Hh----HHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHH---HHHhhc----------CCcccH
Confidence            754421 11    000001114789999999999999999999999877655322   122322          122233


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC---Cccc
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP---MFLP  435 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---g~~~  435 (438)
                      .+.+|++++.+|.++|++.+++..++++++++.|++++   ++++
T Consensus       301 sL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~  345 (450)
T 3bc8_A          301 SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERL  345 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCcee
Confidence            46899999999999999999999999999999998887   6543

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=100.00  E-value=5.7e-32  Score=276.97  Aligned_cols=298  Identities=18%  Similarity=0.148  Sum_probs=218.3

Q ss_pred             CCCCCCCCCc-HHHHHHHHHHh-CCCCCCCCCceeeeecCCCCcchHHHHHHHHHHHh----------hccCCCCcccch
Q 013675          100 WTELPRAGLG-VGVIEKLKEEK-GKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMF----------AHTNPLHLDIFQ  167 (438)
Q Consensus       100 ~~~lP~~g~~-~~i~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~n~~~~~~~~  167 (438)
                      ..++|++|++ +++.+.+++.. .....|......+    ..+..+...+....+..+          ...|+ .+..+|
T Consensus        55 ~~~lp~~g~~~~~i~~~~~~~~~~~~~~yld~aa~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  129 (456)
T 2z67_A           55 HRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIG----EREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KASGAS  129 (456)
T ss_dssp             HCSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECS----SCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHhccccccccccccc----cccccccccccCccccccCCCccHHHHHHhhCc-ccccCc
Confidence            3469999999 88888877762 2222221111101    111111122222111111          22344 445667


Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChH-HHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT-ESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt-~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      +..++++++++++++++|++++       +++|+||| .++.+++.+++.+.   +|   ++|+++..+|+++.++++..
T Consensus       130 ~~~~~~~~~~~~la~~~g~~~~-------~~~t~g~te~a~~~al~~~~~~~---~~---~~vi~~~~~h~s~~~~~~~~  196 (456)
T 2z67_A          130 IMYALTNKILESFFKQLGLNVH-------AIATPISTGMSISLCLSAARKKY---GS---NVVIYPYASHKSPIKAVSFV  196 (456)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCE-------EEEESSCHHHHHHHHHHHHHHHH---CC---CEEEEECCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCCCC-------EEEeCcHHHHHHHHHHHHHHHhc---CC---CEEEEECCCcHHHHHHHHHc
Confidence            7899999999999999999752       38999999 56776887766421   34   67999999999999999999


Q ss_pred             CcEEEEeeC---CCCCccCHHHHHHhh-c----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          247 NIKLWRVPV---DKEFRADVKAIKKYI-N----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       247 Gi~v~~v~~---~~~~~~d~~~Le~~I-~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      |++++.+++   ++++.+|+++|+++| +    .++++|+.++|||++|.++|+++|+++|+++|+|+|||+||+++..+
T Consensus       197 G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g  276 (456)
T 2z67_A          197 GMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNY  276 (456)
T ss_dssp             TCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred             CCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHH
Confidence            999999987   668899999999999 5    37888999999999999999999999999999999999999877653


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~  398 (438)
                      +....   .  -.... ++|++++++|||+++|.|+|+++++++++....   .+.|.          |++.+...+++|
T Consensus       277 ~~~~~---~--~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l---~~~~~----------g~~~~~~~~~~~  337 (456)
T 2z67_A          277 YLEKL---K--KAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEI---SLSYP----------GRASATPVVNTL  337 (456)
T ss_dssp             HHHHH---H--HHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HTTSC----------SCBCSHHHHHHH
T ss_pred             hhHHH---H--HhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhc---CcCCC----------CCCCCCHHHHHH
Confidence            32110   0  00111 789999999999899999999999776554322   12222          334445577899


Q ss_pred             HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC---Ccc
Q 013675          399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLFP---MFL  434 (438)
Q Consensus       399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---g~~  434 (438)
                      +++..++.+|++++.++..++++++.+.|+++|   |+.
T Consensus       338 aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~  376 (456)
T 2z67_A          338 VSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGK  376 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCE
Confidence            999999999999999999999999999999885   654

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.97  E-value=1.7e-29  Score=259.92  Aligned_cols=310  Identities=19%  Similarity=0.177  Sum_probs=227.8

Q ss_pred             CCCCCCCCCCCc-HHHHHHHHHHhCCCCCC-C-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcc-cchhHHHHH
Q 013675           98 GWWTELPRAGLG-VGVIEKLKEEKGKDVVW-Q-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLD-IFQSVARFE  173 (438)
Q Consensus        98 ~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~e  173 (438)
                      ....+||  +++ .++++++.++...+... . ..+.|.+++...+     +++.++...+.+.|+++++ .+++..+++
T Consensus        37 ~~~~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~p-----~v~~~~~~~~~~~~~~~~~~~~~g~~~l~  109 (474)
T 1wyu_B           37 EVPPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNP-----KLHEEAARLFADLHPYQDPRTAQGALRLM  109 (474)
T ss_dssp             SSCCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCC-----HHHHHHHHTTSSCCTTSCGGGCHHHHHHH
T ss_pred             cCCCCCC--CCCHHHHHHHHHHHHhCCCCcccCccccccccccCCH-----HHHHHHHHHHHhcCCCCchhhChHHHHHH
Confidence            3446788  789 99999999986544432 2 3344544443333     3344444445667887776 799999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC--CCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG--ITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G--~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      .++++++++++|++..       .++|+|||+|+.+++++++.+.. .+|  ..+++|+++.+.|+++.++++..|++++
T Consensus       110 ~~l~~~la~~~g~~~~-------~~~~~ggt~a~~~al~~~~~~~~-~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv  181 (474)
T 1wyu_B          110 WELGEYLKALTGMDAI-------TLEPAAGAHGELTGILIIRAYHE-DRGEGRTRRVVLVPDSAHGSNPATASMAGYQVR  181 (474)
T ss_dssp             HHHHHHHHHHHTCSEE-------ECCCSSHHHHHHHHHHHHHHHHH-HTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHCCCce-------eecChHHHHHHHHHHHHHHHHHH-hcCCccCCCEEEEeCCcChhhHHHHHHCCCEEE
Confidence            9999999999999742       27889999999999988875432 255  2345999999999999999999999999


Q ss_pred             EeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc-cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          252 RVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      .||+++++.+|+++|+++|+++|++|++++|| ++|.+ +|+++|+++|+++|+++|+|++|+.+...          ..
T Consensus       182 ~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~pn-~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g----------~~  250 (474)
T 1wyu_B          182 EIPSGPEGEVDLEALKRELGPHVAALMLTNPN-TLGLFERRILEISRLCKEAGVQLYYDGANLNAIMG----------WA  250 (474)
T ss_dssp             EECBCTTSSBCHHHHHHHCSTTEEEEEECSSC-TTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTT----------TC
T ss_pred             EecCCCCCCcCHHHHHHhhCCCceEEEEECCC-CCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhcc----------CC
Confidence            99998899999999999999999999999985 69999 79999999999999999999999654431          11


Q ss_pred             ccCCCCccEEEeCCCCCCCCCC-----CcEEEEEecccccccchhcccccCCCcc-C--C-C-----CccCCCCCchHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAPK-----GTSVVLYRNREIRKHQFVAVTEWSGGLY-V--S-P-----TVAGSRPGGLIAG  396 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p~-----g~g~l~~r~~~~~~~~~~~~~~~~g~~~-~--~-~-----~~~gsr~~~~ia~  396 (438)
                      +....|+|++++|+||++.+|.     |+|+++++++......-.. ..+.|..+ .  . +     ...++.+....++
T Consensus       251 ~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a  329 (474)
T 1wyu_B          251 RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPL-VERGEEGFYLDFDRPKSIGRVRSFYGNFLALVR  329 (474)
T ss_dssp             CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCE-EEECSSCEEEECCCTTCCCCSSSTTSCHHHHHH
T ss_pred             CcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCe-eeccCCeeEecccCcccCcccccCcCcHHHHHH
Confidence            2223468999999999987775     6899998865332111000 00001000 0  0 0     0011111123556


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +|+.+..+|.+++++..++..++++++.+.|+++ |+++
T Consensus       330 a~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~  367 (474)
T 1wyu_B          330 AWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRV  367 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEe
Confidence            7777777889999999999999999999999987 6665

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.96  E-value=7.3e-28  Score=245.08  Aligned_cols=324  Identities=16%  Similarity=0.153  Sum_probs=220.4

Q ss_pred             hhhHHHHHHHHhhhhhccccccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCC-CCCCCceeeeecCCCCcchHHHHH-
Q 013675           73 VNKYIEAEKQKVVDKMQSGVKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDV-VWQGKCSGTVYIGGSEAEGHFSLI-  148 (438)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~-  148 (438)
                      +++|++....+.++++..++++. +.. ..+|| +|.+ .++++++..+...+. ++....+++.+....+ ....+++ 
T Consensus        11 ~~~ml~~~g~~~~~~~~~~~p~~~~~~-~~~lp-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p-~~v~~~~~   87 (438)
T 1wyu_A           11 IREMLRRVGAASLEDLFAHLPKEILSP-PIDLP-EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVP-PVVQALAA   87 (438)
T ss_dssp             HHHHHHHHTCSSTGGGGTTSCGGGSSC-CCCCC-CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCC-HHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHhCcHHHhcC-CCCCC-CCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCc-HHHHHHHh
Confidence            34455555555667777776544 334 77899 8899 999999988743322 2333444443333333 1122222 


Q ss_pred             -HHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675          149 -NEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP  227 (438)
Q Consensus       149 -~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~  227 (438)
                       .+.   +...++++++.+++..+++.++++++++++|+++++    +  ++++|+|.++..++.+++.    .+|   +
T Consensus        88 ~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~----i--~~~~g~taa~ea~~~a~~~----~~g---d  151 (438)
T 1wyu_A           88 RGEF---LTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIAN----A--SMYDGATALAEGVLLALRE----TGR---M  151 (438)
T ss_dssp             SHHH---HHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEEC----S--CBSSHHHHHHHHHHHHHHH----HTC---C
T ss_pred             cchh---hhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccc----e--EEeCcHHHHHHHHHHHHhc----CCC---C
Confidence             122   234577777889999999999999999999998664    4  8999999554444444331    356   8


Q ss_pred             eEEecCCCcCcHHHHH----hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC
Q 013675          228 EMIIPVSAHSAYDKAA----QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG  303 (438)
Q Consensus       228 ~Viv~~~~h~s~~~a~----~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~  303 (438)
                      +|+++.+.|+++..++    +..|++++.+|+ +++.+|+++    |+++|++|++++| |++|.++|+++|+++|+++|
T Consensus       152 ~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g  225 (438)
T 1wyu_A          152 GVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAG  225 (438)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTT
T ss_pred             EEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcC
Confidence            9999999999987655    457999999998 567888877    7889999999999 99999999999999999999


Q ss_pred             CeEEEecc-ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCC-----CCCCCCCcEEEEEecccccccchhc----cc
Q 013675          304 TCLHVDLC-LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHK-----YGLAPKGTSVVLYRNREIRKHQFVA----VT  373 (438)
Q Consensus       304 i~lhVD~a-~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK-----~~~~p~g~g~l~~r~~~~~~~~~~~----~~  373 (438)
                      +++|+|+. .+-+..+        .   . ...|+|++++|+||     |+++| |+|+++++++ +.+.....    ..
T Consensus       226 ~~vivd~d~~a~g~~~--------~---~-~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~~~l~~~~~g~~~  291 (438)
T 1wyu_A          226 ALFVAVADPLSLGVLK--------P---P-GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FVRQLPGRLVSETV  291 (438)
T ss_dssp             CEEEEECCTTGGGTBC--------C---H-HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GGGGCCSCCEEEEE
T ss_pred             CEEEEEechhhccCcC--------C---C-ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HHHhCCCceecccc
Confidence            99997754 2111110        1   1 23478999999888     44567 8999888754 33221100    01


Q ss_pred             ccCCCc-c-CC--------CCccCCCCC---chHHHHHHH--HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          374 EWSGGL-Y-VS--------PTVAGSRPG---GLIAGAWAA--LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       374 ~~~g~~-~-~~--------~~~~gsr~~---~~ia~~~aa--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++.+.. + .+        ....++.+-   ..+++++++  +..++.+|++++.++..++++++.+.|+++||+++
T Consensus       292 ~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~  368 (438)
T 1wyu_A          292 DVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRP  368 (438)
T ss_dssp             BTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEE
T ss_pred             ccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            111110 0 00        001122221   334565555  77788999999999999999999999999988875

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=236.35  Aligned_cols=298  Identities=15%  Similarity=0.132  Sum_probs=214.6

Q ss_pred             CCCCCCCCc-HHHHHHHHHHhC-CCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCC-------CCcc--cchhH
Q 013675          101 TELPRAGLG-VGVIEKLKEEKG-KDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNP-------LHLD--IFQSV  169 (438)
Q Consensus       101 ~~lP~~g~~-~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~-------~~~~--~~~~~  169 (438)
                      .++|++|++ +.|.-.+.++.. ...++.+.+    -.|..+..+...++.+..-.+.+.-.       .+|.  .+..+
T Consensus        39 r~~P~~g~~d~~ie~~l~~la~mdsnn~~~~~----g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssll  114 (501)
T 3hl2_A           39 GKCPENGWDESTLELFLHELAIMDSNNFLGNC----GVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLL  114 (501)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHTTBGGGCSSCC----CCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHHH
T ss_pred             CCCCccCCCHHHHHHHHHHHHhhccCCCcccC----CcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHHH
Confidence            359999999 777777777733 333343333    23566666667788766533332211       1221  12223


Q ss_pred             HHHHH-HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCc
Q 013675          170 ARFEA-EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI  248 (438)
Q Consensus       170 ~~~e~-~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi  248 (438)
                      .++.+ .+.+|+..+ |++...     ..++++|+|.+++.++.++....+. .|   +.||+|..+|.|+.+++.+.|+
T Consensus       115 ~~ltn~l~ld~L~~~-G~~~~~-----~~flVnGsTgg~lamilaa~r~~rp-g~---d~VIvpRn~HKSv~kAliL~Gl  184 (501)
T 3hl2_A          115 NKITNSLVLDIIKLA-GVHTVA-----NCFVVPMATGMSLTLCFLTLRHKRP-KA---KYIIWPRIDQKSCFKSMITAGF  184 (501)
T ss_dssp             HHHHHHHHHHHHHHT-TCTTCC-----EEEEESSCHHHHHHHHHHHHHHHCT-TC---CEEEEECCCCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHc-CCCCCC-----cEEEECcHHHHHHHHHHHHcCcccC-CC---CEEEEecchHHHHHHHHHHcCC
Confidence            44444 445666666 998765     4588999998888887776642211 23   7899999999999999999999


Q ss_pred             EEEEeeC---CCCCccCHHHHHHhhccC---cE-EEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          249 KLWRVPV---DKEFRADVKAIKKYINRN---TV-LIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       249 ~v~~v~~---~~~~~~d~~~Le~~I~~~---t~-~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      ++++|+.   ++...+|+++++++|++.   .. +|+.+.+++..|.++||++|+++|++||+|+|||+|||+...++.+
T Consensus       185 ~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~  264 (501)
T 3hl2_A          185 EPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMH  264 (501)
T ss_dssp             EEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHH
T ss_pred             eEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhh
Confidence            9999987   346789999999999753   33 4444444443457799999999999999999999999987653321


Q ss_pred             hcCCCCCCCccCCCC-ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          322 KLGYPIPPFDFSVQG-VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       322 ~~g~~~p~~~~~~~g-vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                           .|.-.++ .| +|+++.|+||+++.|.|.++++.++++..+..   ..          ..+|+++++..+.+|++
T Consensus       265 -----lp~sA~~-~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~---~~----------~yPGr~S~Spsldl~~t  325 (501)
T 3hl2_A          265 -----LIQQGAR-VGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEI---SK----------MYPGRASASPSLDVLIT  325 (501)
T ss_dssp             -----HHHHHHH-HSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HH----------TSCSCBCSHHHHHHHHH
T ss_pred             -----hHHHHHh-cCCCcEEEecccccceeecCceEEEeCCHHHHHHH---HH----------hCCCCCCCcHHHHHHHH
Confidence                 1111122 35 99999999999999999888888887655432   11          22367788888899999


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      +..+|.+||+++.++..+++++|+++|++++
T Consensus       326 LL~lGr~Gy~~ll~e~~ela~~L~~~L~~la  356 (501)
T 3hl2_A          326 LLSLGSNGYKKLLKERKEMFSYLSNQIKKLS  356 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998853

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.95  E-value=1.7e-26  Score=228.79  Aligned_cols=241  Identities=19%  Similarity=0.211  Sum_probs=188.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~  244 (438)
                      ......++.+++++++++++|.++++    +  ++|+|+|+|+.++++++.... .++|   ++|+++...|+++..++.
T Consensus        37 ~~~~~~~~~~~~~~~la~~~~~~~~~----i--~~~~g~~~a~~~~~~~~~~~~-~~~g---d~vi~~~~~~~~~~~~~~  106 (382)
T 4hvk_A           37 YGFKAREAVQEAREKVAKLVNGGGGT----V--VFTSGATEANNLAIIGYAMRN-ARKG---KHILVSAVEHMSVINPAK  106 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEE----E--EEESSHHHHHHHHHHHHHHHH-GGGC---CEEEEETTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcCe----E--EEECCchHHHHHHHHHhhhhh-cCCC---CEEEECCCCcHHHHHHHH
Confidence            34556788889999999999998764    5  899999999999999876321 1367   899999999999988766


Q ss_pred             h---cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          245 Y---FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       245 ~---~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .   .|++++.+|+++++.+|+++|+++++++|++|++++++||||.+.|+++|.++|++||+ +|+|++++....    
T Consensus       107 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~----  181 (382)
T 4hvk_A          107 FLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI----  181 (382)
T ss_dssp             HHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTB----
T ss_pred             HHHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCC----
Confidence            6   49999999999999999999999999999999999999999999999999999999999 999999764332    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                             +++....++|+++.++||+ ++|.|+|+++++++....      +.+.++........++.+...++++.+++
T Consensus       182 -------~~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~al  247 (382)
T 4hvk_A          182 -------EVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQ------PVILGGGQENGLRSGSENVPSIVGFGKAA  247 (382)
T ss_dssp             -------CCCHHHHTCSEEEEESGGG-TSCTTCEEEEEETTCCCC------CSSCSSCTGGGTSCSCCCHHHHHHHHHHH
T ss_pred             -------CCCchhcCCCEEEEeHHHh-cCCCceEEEEEcCccCcC------cccccCCCcCccccCCcCHHHHHHHHHHH
Confidence                   2334445689999999997 789999999988664111      11111111111112222333455555666


Q ss_pred             HHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          402 MSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      . +..+++++..++..++++++.+.|+++|++++
T Consensus       248 ~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  280 (382)
T 4hvk_A          248 E-ITAMEWREEAERLRRLRDRIIDNVLKIEESYL  280 (382)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             H-HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            5 34578899999999999999999999888764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.95  E-value=4.6e-26  Score=226.24  Aligned_cols=240  Identities=18%  Similarity=0.207  Sum_probs=185.5

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~  244 (438)
                      ..+...+...++++++++++|.++++    +  ++|+|||+|+.++++++..+. ..+|   ++|+++.++|+++..++.
T Consensus        37 ~~~~~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~a~~~~~~~l~~~~-~~~g---d~Vl~~~~~~~~~~~~~~  106 (382)
T 4eb5_A           37 YGFKAREAVQEAREKVAKLVNGGGGT----V--VFTSGATEANNLAIIGYAMRN-ARKG---KHILVSAVEHMSVINPAK  106 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEE----E--EEESSHHHHHHHHHHHHHHHH-GGGC---CEEEEETTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCe----E--EEcCchHHHHHHHHHHHHhhc-cCCC---CEEEECCCcchHHHHHHH
Confidence            34456778889999999999997654    5  899999999999999987321 1367   899999999999887776


Q ss_pred             h---cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          245 Y---FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       245 ~---~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .   .|++++.+|+++++.+|+++|+++++++|++|++++++||||.+.|+++|.++|+++|++ |+|++++.+..    
T Consensus       107 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~----  181 (382)
T 4eb5_A          107 FLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQI----  181 (382)
T ss_dssp             HHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTB----
T ss_pred             HHHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCc----
Confidence            4   699999999998899999999999999999999999999999999999999999999999 99999873222    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccc-ccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE-IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~-~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                             +++....++|+++.++||+ ++|.|+|+++++++. +..       .+.++........++.+...++++.++
T Consensus       182 -------~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a  246 (382)
T 4eb5_A          182 -------EVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQP-------VILGGGQENGLRSGSENVPSIVGFGKA  246 (382)
T ss_dssp             -------CCCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCCC-------SSCSSCTGGGTSCSCCCHHHHHHHHHH
T ss_pred             -------ccCccccCCCEEEeehHHh-cCCCceEEEEEccccccCc-------eecCCCccccccCCCccHHHHHHHHHH
Confidence                   2233333679999999998 789899999888763 111       111110000111233332334556667


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +..+ .+++++..++..++++++.+.|+++|++++
T Consensus       247 l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  280 (382)
T 4eb5_A          247 AEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYL  280 (382)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             HHHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            7654 457889999999999999999999888754

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.94  E-value=5.5e-26  Score=228.07  Aligned_cols=245  Identities=14%  Similarity=0.123  Sum_probs=194.4

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKAA  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a~  243 (438)
                      .+...++..++++++++++|.+.++     ..++|+|||+|+.++++++.     .+|   ++|+++.++|++  +..++
T Consensus        41 ~~~~~~~~~~~~~~la~~~~~~~~~-----~v~~~~sgt~al~~~~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~  107 (411)
T 3nnk_A           41 DPAMTHYMNEVMALYRGVFRTENRW-----TMLVDGTSRAGIEAILVSAI-----RPG---DKVLVPVFGRFGHLLCEIA  107 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCSE-----EEEEESCHHHHHHHHHHHHC-----CTT---CEEEEEECSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCc-----EEEECCCcHHHHHHHHHHhc-----CCC---CEEEEecCCchHHHHHHHH
Confidence            4556678889999999999998664     23788999999999999884     367   899999999988  88999


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      +..|++++.+|+++++.+|+++|++++++ +|++|++++++||+|.+.|+++|+++|++||+++|+|++++....     
T Consensus       108 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----  182 (411)
T 3nnk_A          108 RRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGN-----  182 (411)
T ss_dssp             HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTB-----
T ss_pred             HHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCc-----
Confidence            99999999999988999999999999987 899999999999999999999999999999999999999764332     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccc--hhcccccCCCccCC------------------
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQ--FVAVTEWSGGLYVS------------------  382 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~--~~~~~~~~g~~~~~------------------  382 (438)
                            +++....++|+++.++||++++|.|+|+++.+++......  ....+.|.|+....                  
T Consensus       183 ------~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~  256 (411)
T 3nnk_A          183 ------PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMD  256 (411)
T ss_dssp             ------CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHH
T ss_pred             ------ccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHh
Confidence                  3555666899999999999889999999888754322111  11122343322110                  


Q ss_pred             -----CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          383 -----PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       383 -----~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                           ....++.+...++++.+++..+...|+++..++..++++++.+.|+++ ++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~  313 (411)
T 3nnk_A          257 YWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLET  313 (411)
T ss_dssp             HHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             hhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence                 011233333446677778877777789999999999999999999986 6554

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.94  E-value=2.4e-25  Score=224.61  Aligned_cols=243  Identities=21%  Similarity=0.248  Sum_probs=189.1

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      .....+...++++++++++|.++++    +  ++|+|||+|+.++++++.+... ++|   ++|+++.++|+++..++..
T Consensus        63 ~~~~~~~~~~l~~~la~~~~~~~~~----v--~~~~ggt~a~~~a~~~l~~~~~-~~g---d~Vl~~~~~~~~~~~~~~~  132 (423)
T 3lvm_A           63 GWQAEEAVDIARNQIADLVGADPRE----I--VFTSGATESDNLAIKGAANFYQ-KKG---KHIITSKTEHKAVLDTCRQ  132 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCGGG----E--EEESSHHHHHHHHHHHHHHHHT-TTC---CEEEEETTSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCe----E--EEeCChHHHHHHHHHHHHHhhc-cCC---CEEEECCccchHHHHHHHH
Confidence            3455677888999999999998765    5  8999999999999998875322 246   8999999999999888755


Q ss_pred             c---CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          246 F---NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       246 ~---Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      +   |++++.+|+++++.+|+++|++++++++++|++++++||+|.+.|+++|.++|++||+++++|++++....     
T Consensus       133 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----  207 (423)
T 3lvm_A          133 LEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL-----  207 (423)
T ss_dssp             HHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-----
T ss_pred             HHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCC-----
Confidence            5   99999999999999999999999999999999999999999999999999999999999999999875433     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                            +++....++|+++.++||+ ++|.|+|+++++++......    ....++........++.+...++++.+++.
T Consensus       208 ------~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~al~  276 (423)
T 3lvm_A          208 ------PIDLSQLKVDLMSFSGHKI-YGPKGIGALYVRRKPRVRIE----AQMHGGGHERGMRSGTLPVHQIVGMGEAYR  276 (423)
T ss_dssp             ------CCCTTTSCCSEEEEESTTT-TSCSSCEEEEECBTTBCCCC----CSSCSSCTTTTTCCSCCCHHHHHHHHHHHH
T ss_pred             ------CcChhhcCCCEEEechHHh-cCCCCeEEEEEeccccCCCC----ccccCCcccccccCCCCCHHHHHHHHHHHH
Confidence                  2444556789999999996 78999999888765332211    111111111111223333334555666666


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+. +.+++..++..++++++.+.|+++|++++
T Consensus       277 ~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  308 (423)
T 3lvm_A          277 IAK-EEMATEMERLRGLRNRLWNGIKDIEEVYL  308 (423)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            543 34788999999999999999999988764

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.94  E-value=4.7e-26  Score=228.94  Aligned_cols=244  Identities=11%  Similarity=0.086  Sum_probs=190.8

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKAA  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a~  243 (438)
                      .+...++..++++++++++|.+++.    + -++++|||+|+.++++++.     .+|   ++|+++.+.|++  +.+++
T Consensus        39 ~~~~~~~~~~l~~~la~~~g~~~~~----~-~~~~~s~t~al~~~~~~l~-----~~g---d~Vl~~~~~~~~~~~~~~~  105 (416)
T 3isl_A           39 DPAFTGIMNETMEMLRELFQTKNRW----A-YPIDGTSRAGIEAVLASVI-----EPE---DDVLIPIYGRFGYLLTEIA  105 (416)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCCSE----E-EEEESCHHHHHHHHHHHHC-----CTT---CEEEEEESSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCc----E-EEecCcHHHHHHHHHHHhc-----CCC---CEEEEecCCcccHHHHHHH
Confidence            3556778889999999999998764    2 2488999999999998874     367   899999999998  88889


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      +..|++++.+|+++++.+|+++|+++++ ++|++|++++++||+|.+.|+++|.++|++||+++|+|++++.+..     
T Consensus       106 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----  180 (416)
T 3isl_A          106 ERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGC-----  180 (416)
T ss_dssp             HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTS-----
T ss_pred             HhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCC-----
Confidence            9999999999999889999999999998 6899999999999999999999999999999999999999764332     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc---cccC---------CCc-----------
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV---TEWS---------GGL-----------  379 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~---~~~~---------g~~-----------  379 (438)
                            +++....++|+++.++||++++|.|+|+++.+++...... ...   ..|.         |+.           
T Consensus       181 ------~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~-~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~  253 (416)
T 3isl_A          181 ------EVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIA-ARKKVERGIATQADRAALSGNRPITSNYFDLSQ  253 (416)
T ss_dssp             ------CCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHH-TC------------------CCCCSCSTTCHHH
T ss_pred             ------CcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhh-ccccccccccccccchhccCCCCCCccccchHH
Confidence                  3455566899999999999899999999888754322111 000   0110         000           


Q ss_pred             -----cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          380 -----YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       380 -----~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                           .......|+.+...++++.+++..+...|+++..++..++++++.+.|++. ++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~  313 (416)
T 3isl_A          254 LEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRL  313 (416)
T ss_dssp             HHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence                 001112234444456677788887777779999999999999999999985 6654

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.94  E-value=2.3e-25  Score=222.97  Aligned_cols=245  Identities=22%  Similarity=0.208  Sum_probs=184.8

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC-eEEecCCCcCcHHHHHh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP-EMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~-~Viv~~~~h~s~~~a~~  244 (438)
                      .....+..+++++++++++|+++++    +  ++|+|||+|+.++++++..+.. ++|   + +|+++...|+++...+.
T Consensus        58 ~~~~~~~~~~l~~~la~~~~~~~~~----v--~~~~g~t~al~~~~~~l~~~~~-~~g---d~~Vl~~~~~~~~~~~~~~  127 (400)
T 3vax_A           58 GIRAKRGVERAREYLASTVSAEPDE----L--IFTSGATESNNIALLGLAPYGE-RTG---RRHIITSAIEHKAVLEPLE  127 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCGGG----E--EEESCHHHHHHHHHHTTHHHHH-HHT---CCEEEEETTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCc----E--EEeCCHHHHHHHHHHHHHHhhc-cCC---CCEEEECccccHhHHHHHH
Confidence            3445677888999999999998665    5  8999999999999999863321 256   8 99999999999877666


Q ss_pred             h---cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          245 Y---FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       245 ~---~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .   .|++++.+|+++++.+|+++|+++++++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+..+   
T Consensus       128 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~---  204 (400)
T 3vax_A          128 HLAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP---  204 (400)
T ss_dssp             HHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG---
T ss_pred             HHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC---
Confidence            5   4999999999999999999999999999999999999999999999999999999999999999998744332   


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEE-EecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVL-YRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~-~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                              .+.... +|+++.++||+ ++|.|+|+++ ++++.+........+.+.++........++.+...++++.++
T Consensus       205 --------~~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a  274 (400)
T 3vax_A          205 --------GDLTTP-IDMISISGHKI-GAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEA  274 (400)
T ss_dssp             --------GGGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHH
T ss_pred             --------cChhhc-CcEEEEeHHHh-CCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHH
Confidence                    333334 89999999996 7899999998 887433211000111111111100111222222334445556


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +..+ .+++++..++..++++++.+.|+ .+++++
T Consensus       275 l~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~  307 (400)
T 3vax_A          275 AKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQV  307 (400)
T ss_dssp             HHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEE
T ss_pred             HHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEE
Confidence            6543 45788999999999999999998 778764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.94  E-value=2e-25  Score=222.72  Aligned_cols=243  Identities=15%  Similarity=0.065  Sum_probs=183.2

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HHHHh
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DKAAQ  244 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~a~~  244 (438)
                      +...+...++++++++++|.++++    +  ++|+|||+|+.++++++.     ++|   ++|+++.++|++.  ...++
T Consensus        38 ~~~~~~~~~l~~~la~~~g~~~~~----v--~~t~g~t~a~~~~~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~  103 (392)
T 2z9v_A           38 PAFQLLYEKVVDKAQKAMRLSNKP----V--ILHGEPVLGLEAAAASLI-----SPD---DVVLNLASGVYGKGFGYWAK  103 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCC----E--EESSCTHHHHHHHHHHHC-----CTT---CCEEEEESSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCE----E--EEeCCchHHHHHHHHHhc-----CCC---CEEEEecCCcccHHHHHHHH
Confidence            455667778999999999997654    5  899999999999999874     366   8999999999875  34556


Q ss_pred             hcCcEEEEeeCCCCCccCHHHHHHhhc--cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          245 YFNIKLWRVPVDKEFRADVKAIKKYIN--RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~--~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      ..|++++.+|+++++.+|+++++++++  +++++|++++++||||.+.|+++|.++|+++|+++|+|++++.+..     
T Consensus       104 ~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-----  178 (392)
T 2z9v_A          104 RYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGM-----  178 (392)
T ss_dssp             HHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTB-----
T ss_pred             HcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCc-----
Confidence            679999999998888899999999994  5799999999999999999999999999999999999999874332     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch-h-----cccccC---CCccCCCCccCCCCCch
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF-V-----AVTEWS---GGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~-~-----~~~~~~---g~~~~~~~~~gsr~~~~  393 (438)
                            +++....++|+++.++||++++|.|+|+++++++....... .     ...++.   .+........|+.+...
T Consensus       179 ------~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (392)
T 2z9v_A          179 ------KTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSE  252 (392)
T ss_dssp             ------SCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHH
T ss_pred             ------ccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHH
Confidence                  23333446899999999998899999998887543211110 0     000000   00000111123333334


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++++.++++.+...|+++..++..++++++.+.|+++ ++++
T Consensus       253 ~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~  293 (392)
T 2z9v_A          253 INGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSV  293 (392)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence            5566777877766678899999999999999999887 6554

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.93  E-value=2.5e-24  Score=213.66  Aligned_cols=238  Identities=23%  Similarity=0.243  Sum_probs=181.5

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH---
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA---  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~---  243 (438)
                      ....+...++++++++++|.++++    +  ++|+|||+|+.+++++++... ..+|   ++|+++.++|+++...+   
T Consensus        40 ~~~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~a~~~~~~~~~~~~-~~~g---d~vl~~~~~~~~~~~~~~~~  109 (384)
T 1eg5_A           40 IEANLHMEKAREKVAKVLGVSPSE----I--FFTSCATESINWILKTVAETF-EKRK---RTIITTPIEHKAVLETMKYL  109 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCGGG----E--EEESCHHHHHHHHHHHHHHHT-TTTC---CEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCe----E--EEECCHHHHHHHHHHhhhhhc-cCCC---CEEEECCCCchHHHHHHHHH
Confidence            344567778999999999987665    5  899999999999999987310 1256   89999999999987766   


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC--CeEEEeccccchhhhhhh
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~--i~lhVD~a~gg~~~pf~~  321 (438)
                      +..|++++.+|+++++.+|+++|+++++++|++|++++++||+|.+.|+++|.++|+++|  +++|+|++++....    
T Consensus       110 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~----  185 (384)
T 1eg5_A          110 SMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI----  185 (384)
T ss_dssp             HHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS----
T ss_pred             HhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCc----
Confidence            677999999999888999999999999999999999999999999999999999999999  99999999862111    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccc-ccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE-IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~-~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                             ++++...++|++++++||+ ++|.|+|+++.+++. +..       .+.+.........++.+....+++.++
T Consensus       186 -------~~~~~~~~~di~~~s~sK~-~g~~G~G~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~a  250 (384)
T 1eg5_A          186 -------PFSLEKLEVDYASFSAHKF-HGPKGVGITYIRKGVPIRP-------LIHGGGQERGLRSGTQNVPGIVGAARA  250 (384)
T ss_dssp             -------CCCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTSCCCC-------SBCSSCTTTTTBCSCCCHHHHHHHHHH
T ss_pred             -------ccCchhcCCCEEEecHHHh-cCCCceEEEEEcCCCcccc-------ccccCcccccccCCCCChHHHHHHHHH
Confidence                   2333344789999999998 788889998887652 111       011110000112233333334455666


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++.+ .+++++..++..++++++.+.|++ +++++
T Consensus       251 l~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~  283 (384)
T 1eg5_A          251 MEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHI  283 (384)
T ss_dssp             HHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEE
T ss_pred             HHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEE
Confidence            6543 456788999999999999999988 56654

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.93  E-value=7.2e-25  Score=218.23  Aligned_cols=267  Identities=18%  Similarity=0.166  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      +.+.+.+.+......++......+.......++++.+++++|.++++    +  ++|+|||+|+.+++++++.    .+|
T Consensus        32 v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~a~~~~~~~~~~----~~g  101 (390)
T 1elu_A           32 ALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNT----I--TITDNVTTGCDIVLWGLDW----HQG  101 (390)
T ss_dssp             HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGG----E--EEESSHHHHHHHHHHHSCC----CTT
T ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHH----E--EEeCChHHHHHHHHhCCCC----CCC
Confidence            34444444443322333322233433456778888999999987665    5  8999999999999998731    256


Q ss_pred             CCCCeEEecCCCcCcHHH----HHhhcCcEEEEeeCC--CCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHH
Q 013675          224 ITRPEMIIPVSAHSAYDK----AAQYFNIKLWRVPVD--KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGE  297 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~----a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~  297 (438)
                         ++|+++.++|.++..    .++..|++++.+|++  .++.+|+++|++++++++++|++++++||+|.+.|+++|.+
T Consensus       102 ---d~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~  178 (390)
T 1elu_A          102 ---DEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMA  178 (390)
T ss_dssp             ---CEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHH
T ss_pred             ---CEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHH
Confidence               899999999999654    357789999999997  57889999999999999999999999999999999999999


Q ss_pred             HHH----HcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc
Q 013675          298 LAL----SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       298 la~----~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      +|+    ++|+++++|++|+.+..           +++....++|+++.++|||+++|.|+|+++.+++ +.+.......
T Consensus       179 l~~~~~~~~~~~li~Dea~~~g~~-----------~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~  246 (390)
T 1elu_A          179 VCRRHQGNYPVRVLVDGAQSAGSL-----------PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD-CLGEINPTYV  246 (390)
T ss_dssp             HHHHCCSSSCCEEEEECTTTBTTB-----------CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT-TGGGCCCCSC
T ss_pred             HHhhhhhhcCcEEEEEcccccCCc-----------CCChhhcCCCEEEccccccccCCCceEEEEECHH-hHhhcCCccc
Confidence            999    99999999999874322           2334445789999999998899999999988754 3322111111


Q ss_pred             ccCCC-------cc-----CCCCccCCCCCchHHHHHHHHHHHcHHH-HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          374 EWSGG-------LY-----VSPTVAGSRPGGLIAGAWAALMSLGQEG-YLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       374 ~~~g~-------~~-----~~~~~~gsr~~~~ia~~~aal~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .|...       .+     ......|+.+....+++.+++..+...+ +++..++..++++++.+.|+++|++++
T Consensus       247 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  321 (390)
T 1elu_A          247 GWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHC  321 (390)
T ss_dssp             CTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             cCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence            11000       00     0011123333333556667777765555 888999999999999999999888764

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.93  E-value=3.1e-25  Score=220.60  Aligned_cols=242  Identities=12%  Similarity=0.148  Sum_probs=186.2

Q ss_pred             hhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHHH
Q 013675          167 QSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKAA  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a~  243 (438)
                      +...++.+++++++++++|.+ +++    +  ++|+|||+|+.++++++.     ++|   ++|+++.++|++  +..++
T Consensus        49 ~~~~~~~~~~~~~la~~~g~~~~~~----v--~~~~g~t~a~~~~~~~l~-----~~g---d~vl~~~~~~~~~~~~~~~  114 (386)
T 2dr1_A           49 KEYRKVHMDTVERLREFLEVEKGEV----L--LVPSSGTGIMEASIRNGV-----SKG---GKVLVTIIGAFGKRYKEVV  114 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSSEE----E--EESSCHHHHHHHHHHHHS-----CTT---CEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcE----E--EEeCChHHHHHHHHHHhh-----cCC---CeEEEEcCCchhHHHHHHH
Confidence            445788889999999999997 332    4  899999999999999874     266   899999999998  88999


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhh--ccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYI--NRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I--~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      +..|++++.+|+++++.+|+++|++++  ++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..+   
T Consensus       115 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~---  191 (386)
T 2dr1_A          115 ESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD---  191 (386)
T ss_dssp             HHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBC---
T ss_pred             HHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcc---
Confidence            999999999999888899999999999  468999999999999999999999999999999999999998755432   


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh-cccccCCCc------cC-CCCccCCCCCch
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGGL------YV-SPTVAGSRPGGL  393 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~-~~~~~~g~~------~~-~~~~~gsr~~~~  393 (438)
                              ++....++|+++.++||++.+|.|+|+++.+++ +.+.... ....|....      .. .....++.+...
T Consensus       192 --------~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (386)
T 2dr1_A          192 --------IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER-FLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQ  262 (386)
T ss_dssp             --------CCTTTTTCSEEEEETTSTTCCCSSCEEEEECHH-HHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHH
T ss_pred             --------ccccccCCcEEEEeccccccCCCceEEEEECHH-HHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHH
Confidence                    233445789999999999888878999888754 3221100 000010000      00 011122333334


Q ss_pred             HHHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          394 IAGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       394 ia~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+++.++++.+... ++++..++..++++++.+.|+++ ++++
T Consensus       263 ~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~  304 (386)
T 2dr1_A          263 VFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDI  304 (386)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence            55677777766555 68899999999999999999887 6553

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.93  E-value=7.3e-26  Score=224.79  Aligned_cols=243  Identities=12%  Similarity=0.092  Sum_probs=188.1

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCC--CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKE--KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDK  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~--~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~  241 (438)
                      .+...++..++++++++++|.+.  ++    +  ++|+|||+|+. ++.++.     ++|   ++|+++.+.|++  +..
T Consensus        30 ~~~~~~~~~~~~~~la~~~~~~~~~~~----v--~~~~g~t~al~-~~~~~~-----~~g---d~vi~~~~~~~~~~~~~   94 (384)
T 3zrp_A           30 SKEFVEALAYSLKGLRYVMGASKNYQP----L--IIPGGGTSAME-SVTSLL-----KPN---DKILVVSNGVFGDRWEQ   94 (384)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTSEE----E--EEESCHHHHHH-HGGGGC-----CTT---CEEEEECSSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCCcE----E--EEcCCcHHHHH-HHHhhc-----CCC---CEEEEecCCcchHHHHH
Confidence            45567788899999999999987  43    5  89999999999 887764     366   899999999966  667


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      .++..|++++.+|+++++.+|++++++++++ ++++|++++++||+|.+.|+++|.++|++||+++|+|++++.+..   
T Consensus        95 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~---  171 (384)
T 3zrp_A           95 IFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAE---  171 (384)
T ss_dssp             HHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTS---
T ss_pred             HHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCc---
Confidence            7788999999999998899999999999998 899999999999999999999999999999999999999864332   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc-chhcccccCCCc--cC---------CCCccCC
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGL--YV---------SPTVAGS  388 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~-~~~~~~~~~g~~--~~---------~~~~~gs  388 (438)
                              +++....++|++++++||++++|.|+|+++.+++..... .......|....  +.         .....|+
T Consensus       172 --------~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  243 (384)
T 3zrp_A          172 --------EVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFAT  243 (384)
T ss_dssp             --------CCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSC
T ss_pred             --------cccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCC
Confidence                    244455678999999999988899999988875532221 000000000000  00         0011123


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+...++++.+++..+...++++..++..++++++.+.|+++ ++++
T Consensus       244 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  289 (384)
T 3zrp_A          244 PPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEI  289 (384)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeE
Confidence            333446677788887777789999999999999999999987 6654

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.93  E-value=6e-25  Score=219.37  Aligned_cols=243  Identities=13%  Similarity=0.111  Sum_probs=184.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~a  242 (438)
                      .+...+...++++++++++|.+++ +    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|++.  .+.
T Consensus        47 ~~~~~~~~~~l~~~la~~~g~~~~~~----i--~~~~g~t~a~~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~  112 (393)
T 2huf_A           47 HPETLKIMDDIKEGVRYLFQTNNIAT----F--CLSASGHGGMEATLCNLL-----EDG---DVILIGHTGHWGDRSADM  112 (393)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCCSEE----E--EESSCHHHHHHHHHHHHC-----CTT---CEEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCcE----E--EEcCcHHHHHHHHHHHHh-----CCC---CEEEEECCCcchHHHHHH
Confidence            344567788899999999999764 3    4  899999999999999874     266   8999999999883  445


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      ++..|++++.+|+++++.+|++++++++++ +|++|++++++||||.+.|+++|.++|+++|+++|+|++++.+..    
T Consensus       113 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~----  188 (393)
T 2huf_A          113 ATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGA----  188 (393)
T ss_dssp             HHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB----
T ss_pred             HHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC----
Confidence            667899999999988889999999999988 899999999999999999999999999999999999999753222    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc---ccccC----------CCccCCCCccCC
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA---VTEWS----------GGLYVSPTVAGS  388 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~---~~~~~----------g~~~~~~~~~gs  388 (438)
                             +++....++|+++.++||++++|.|.|+++.++ ++.+.....   ...|.          ++........|+
T Consensus       189 -------~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (393)
T 2huf_A          189 -------PMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSH-RAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHT  260 (393)
T ss_dssp             -------CCCTTTTTCSEEECCSSSTTCCCSSCEEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCC
T ss_pred             -------CcchhhcCccEEEECCCcccccCCCeEEEEECH-HHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCC
Confidence                   233444578999999999988899999988864 333221111   01111          110001111233


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+...++++.++++.+...++++..++..++++++.+.|+++ |+++
T Consensus       261 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  306 (393)
T 2huf_A          261 ISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFEL  306 (393)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence            333345566667776655678889999999999999999887 6543

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.93  E-value=2.1e-25  Score=228.59  Aligned_cols=239  Identities=15%  Similarity=0.127  Sum_probs=185.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHh
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQ  244 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~  244 (438)
                      ...+.+++++++++++|+++++    +  ++|+|+|+++.++++++..     +|-.+++|+++.++|++    +...++
T Consensus       109 ~~~~~~~l~~~la~~~g~~~~~----v--~~t~g~t~al~~~~~~~~~-----~~~~~~~Vl~~~~~~~s~~~~~~~~~~  177 (465)
T 3e9k_A          109 WITGDESIVGLMKDIVGANEKE----I--ALMNALTVNLHLLMLSFFK-----PTPKRYKILLEAKAFPSDHYAIESQLQ  177 (465)
T ss_dssp             GGGTTHHHHGGGHHHHTCCGGG----E--EECSCHHHHHHHHHHHHCC-----CCSSSCEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHcCCCcCC----E--EEECCHHHHHHHHHHHhcc-----ccCCCCEEEEcCCcCCchHHHHHHHHH
Confidence            3445667889999999998765    6  9999999999999998752     45334779999999988    455777


Q ss_pred             hcCcEE-----EEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675          245 YFNIKL-----WRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       245 ~~Gi~v-----~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      ..|+++     ..+|.+.++.+|+++++++|+   ++|++|++++++||||.+.|+++|.++|+++|+++|+|++++.+.
T Consensus       178 ~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~  257 (465)
T 3e9k_A          178 LHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGN  257 (465)
T ss_dssp             HTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             HcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCC
Confidence            789864     445666788999999999997   679999999999999999999999999999999999999987544


Q ss_pred             hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCcc---------CC--C-
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLY---------VS--P-  383 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~---------~~--~-  383 (438)
                      .           +++....++|++++++||+++ +|.|+|+++++++. ..........|.++..         ..  . 
T Consensus       258 ~-----------~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  325 (465)
T 3e9k_A          258 V-----------ELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH-AHTIKPALVGWFGHELSTRFKMDNKLQLIPG  325 (465)
T ss_dssp             S-----------CCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGG-TTTSCCSSCCGGGBCHHHHTTCCSCCCBCSS
T ss_pred             c-----------CCchhhcCCCEEEECcccccccCCCceEEEEEcHHH-HhhcCCcccCccCCCCCcccccCCCcCcCCC
Confidence            3           355556689999999999975 77788998886543 2221111223333210         00  0 


Q ss_pred             ---CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          384 ---TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       384 ---~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                         ...|+.+...++++.+++..+...|++++.++..++++++.+.|+++
T Consensus       326 ~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  375 (465)
T 3e9k_A          326 VCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHN  375 (465)
T ss_dssp             GGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence               11234444557888999988887889999999999999999999885

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.93  E-value=7.7e-26  Score=221.81  Aligned_cols=240  Identities=17%  Similarity=0.160  Sum_probs=183.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HH
Q 013675          166 FQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DK  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~  241 (438)
                      .+...+...++++++++++|.+  +++    +  ++|+|||+|+.++++++.      +    ++|+++.+.|+++  .+
T Consensus        28 ~~~~~~~~~~l~~~la~~~g~~~~~~~----v--~~t~g~t~a~~~~~~~~~------~----d~vl~~~~~~~~~~~~~   91 (353)
T 2yrr_A           28 DPEVLRVNRAIQERLAALFDPGEGALV----A--ALAGSGSLGMEAGLANLD------R----GPVLVLVNGAFSQRVAE   91 (353)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCTTCEE----E--EESSCHHHHHHHHHHTCS------C----CCEEEEECSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCce----E--EEcCCcHHHHHHHHHHhc------C----CcEEEEcCCCchHHHHH
Confidence            4556677889999999999996  333    4  899999999999998764      1    5799999999884  56


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      +++..|++++.+|+++++.+|++++++++++ ++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+..   
T Consensus        92 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~---  168 (353)
T 2yrr_A           92 MAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGML---  168 (353)
T ss_dssp             HHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS---
T ss_pred             HHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccc---
Confidence            7788899999999998889999999999998 899999999999999999999999999999999999999853222   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC------CccCCCCccCCCCCchH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG------GLYVSPTVAGSRPGGLI  394 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g------~~~~~~~~~gsr~~~~i  394 (438)
                              +++....++|++++++||++++|.|+|+++.+++......  ....|..      +........++.+...+
T Consensus       169 --------~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (353)
T 2yrr_A          169 --------PFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFT--GKRGWYLDLARVAEHWERGGYHHTTPVLLH  238 (353)
T ss_dssp             --------CCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCC--CCSCSTTCHHHHHHHHTTCCCSSCCCHHHH
T ss_pred             --------cccccccCceEEEecCcccccCCCceEEEEECHHHHHHhc--cCCCccccHHHHhhhhhcCCCCCCCCHHHH
Confidence                    2233334679999999999889999999888765332111  0010100      00001112233333345


Q ss_pred             HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          395 AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       395 a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +++.+++..+...|+++..++..++++++.+.|+++ |+++
T Consensus       239 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  278 (353)
T 2yrr_A          239 YALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRP  278 (353)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence            566778877767778999999999999999999887 6553

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.93  E-value=2.5e-25  Score=222.32  Aligned_cols=242  Identities=16%  Similarity=0.135  Sum_probs=188.4

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHHH
Q 013675          167 QSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKAA  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a~  243 (438)
                      +...++.+++++++++++|.+++ +    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|++  +..++
T Consensus        63 ~~~~~~~~~~~~~la~~~g~~~~~~----v--~~t~g~t~al~~~~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~  128 (393)
T 1vjo_A           63 PAFLALMDEIQSLLRYVWQTENPLT----I--AVSGTGTAAMEATIANAV-----EPG---DVVLIGVAGYFGNRLVDMA  128 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCSCE----E--EESSCHHHHHHHHHHHHC-----CTT---CEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcE----E--EEeCchHHHHHHHHHhcc-----CCC---CEEEEEcCChhHHHHHHHH
Confidence            34667888999999999999766 5    5  899999999999999985     366   899999999999  99999


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      +..|++++.+|+++++.+|+++|++++++ ++++|++++++||+|.+.|+++|.++|+++|+++++|++|+.+..     
T Consensus       129 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~-----  203 (393)
T 1vjo_A          129 GRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGV-----  203 (393)
T ss_dssp             HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTS-----
T ss_pred             HHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCc-----
Confidence            99999999999998889999999999998 899999999999999999999999999999999999999872211     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc---ccccCCCc-----c-CCCCcc-CCCCCc
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA---VTEWSGGL-----Y-VSPTVA-GSRPGG  392 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~---~~~~~g~~-----~-~~~~~~-gsr~~~  392 (438)
                            +++....++|+++.++||++++|.|+|+++.+++. .+.....   ...|..+.     + ...... |+.+..
T Consensus       204 ------~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  276 (393)
T 1vjo_A          204 ------PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRA-IEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPIN  276 (393)
T ss_dssp             ------CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHH-HHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHH
T ss_pred             ------CCcccccCccEEEEcCcccccCCCceEEEEECHHH-HHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHH
Confidence                  24444567899999999998888899998887542 2211000   00110000     0 000111 133333


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..+++.++++.+..+++++..++..++++++.+.|+++ ++++
T Consensus       277 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  318 (393)
T 1vjo_A          277 LYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSL  318 (393)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence            45567777877656678899999999999999999887 6554

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.93  E-value=7.7e-25  Score=218.07  Aligned_cols=244  Identities=13%  Similarity=0.112  Sum_probs=188.3

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC--cHHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS--AYDKAA  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~--s~~~a~  243 (438)
                      .+...+...++++++++++|.+...     ..++|+|||+|+.++++++.     ++|   ++|+++...|+  .+...+
T Consensus        51 ~~~~~~~~~~l~~~la~~~~~~~~~-----~v~~~~gg~~al~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~~  117 (393)
T 3kgw_A           51 QKEMLQIMEEIKQGIQYVFQTRNPL-----TLVVSGSGHCAMETALFNLL-----EPG---DSFLTGTNGIWGMRAAEIA  117 (393)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCCSE-----EEEESCCTTTHHHHHHHHHC-----CTT---CEEEEEESSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCc-----EEEEeCCcHHHHHHHHHhcC-----CCC---CEEEEEeCCchhHHHHHHH
Confidence            3555677888999999999997653     23899999999999999875     367   89999988875  347788


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      +..|++++.+|+++++.+|+++|++++++ +|++|++++++||+|.+.|+++|.++|++||+++++|++++.+..     
T Consensus       118 ~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~-----  192 (393)
T 3kgw_A          118 DRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGV-----  192 (393)
T ss_dssp             HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTS-----
T ss_pred             HHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCc-----
Confidence            88999999999988889999999999998 899999999999999999999999999999999999999863322     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccccc-------------CCCccCCCCccCCC
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW-------------SGGLYVSPTVAGSR  389 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~-------------~g~~~~~~~~~gsr  389 (438)
                            +++....++|+++.++||++++|.|+|+++.+++.. +........|             .++........++.
T Consensus       193 ------~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (393)
T 3kgw_A          193 ------PIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAK-YKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTT  265 (393)
T ss_dssp             ------CCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHH-HHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCC
T ss_pred             ------ccchhhcCCCEEEecCcccccCCCceeEEEECHHHH-HHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCC
Confidence                  344455678999999999988999999988865432 2111111111             11111111122333


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +...++++.+++..+..+++++..++..++++++.+.|+++ ++++
T Consensus       266 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  310 (393)
T 3kgw_A          266 PVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKF  310 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence            33445667777777777788999999999999999999987 6654

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.93  E-value=1.2e-24  Score=218.90  Aligned_cols=243  Identities=21%  Similarity=0.170  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHh
Q 013675          170 ARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQ  244 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~  244 (438)
                      .+...++++.+++++|. ++++    +  ++|+|||+|+.+++++++.. ...+|   ++|+++.++|++    +...++
T Consensus        71 ~~~~~~l~~~la~~~~~~~~~~----v--~~~~g~t~a~~~~~~~~~~~-~~~~g---d~Vl~~~~~~~~~~~~~~~~~~  140 (420)
T 1t3i_A           71 TDAYEAVRNKVAKFINARSPRE----I--VYTRNATEAINLVAYSWGMN-NLKAG---DEIITTVMEHHSNLVPWQMVAA  140 (420)
T ss_dssp             HHHHHHHHHHHHHHTTCSCGGG----E--EEESSHHHHHHHHHHHTHHH-HCCTT---CEEEEETTCCGGGTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCe----E--EEcCChHHHHHHHHHHhhhc-ccCCC---CEEEECcchhHHHHHHHHHHHH
Confidence            45667788899999998 5443    5  89999999999999998421 11356   899999999999    667788


Q ss_pred             hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          245 YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      ..|++++.+|+++++.+|++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++++.+..+      
T Consensus       141 ~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~------  214 (420)
T 1t3i_A          141 KTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP------  214 (420)
T ss_dssp             HHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC------
T ss_pred             hcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCcc------
Confidence            88999999999888999999999999999999999999999999999999999999999999999998744321      


Q ss_pred             CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC--------ccC--CC-CccCCCCCch
Q 013675          325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG--------LYV--SP-TVAGSRPGGL  393 (438)
Q Consensus       325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~--------~~~--~~-~~~gsr~~~~  393 (438)
                           ++....++|+++.++||. ++|.|+|+++.++ ++.+........|...        .+.  .. ...|+.+...
T Consensus       215 -----~~~~~~~~di~~~s~sK~-~~~~g~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (420)
T 1t3i_A          215 -----LDVQLIDCDWLVASGHKM-CAPTGIGFLYGKE-EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAE  287 (420)
T ss_dssp             -----CCHHHHTCSEEEEEGGGT-TSCTTCEEEEECH-HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHH
T ss_pred             -----CchhhcCCCEEEEehhhh-cCCCceEEEEEch-HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHH
Confidence                 233334689999999995 7888999888764 3332211111111100        000  00 0113333334


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+++.++++.+...++++..++..++++++.+.|+++|++++
T Consensus       288 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  329 (420)
T 1t3i_A          288 AIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRL  329 (420)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            455555777776667889999999999999999999888764

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.93  E-value=2.4e-24  Score=215.40  Aligned_cols=244  Identities=18%  Similarity=0.151  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHH
Q 013675          169 VARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAA  243 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~  243 (438)
                      ..+...++++.+++++|. ++++    +  ++|+|+|+|+.+++++++.. ..++|   ++|+++.++|++..    ..+
T Consensus        65 ~~~~~~~l~~~la~~~~~~~~~~----v--~~~~g~t~a~~~~~~~~~~~-~~~~g---d~vl~~~~~~~~~~~~~~~~~  134 (406)
T 1kmj_A           65 ATEKMENVRKRASLFINARSAEE----L--VFVRGTTEGINLVANSWGNS-NVRAG---DNIIISQMEHHANIVPWQMLC  134 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCGGG----E--EEESSHHHHHHHHHHHTHHH-HCCTT---CEEEEETTCCGGGTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCe----E--EEeCChhHHHHHHHHHhhhh-cCCCC---CEEEEecccchHHHHHHHHHH
Confidence            455677888999999998 4444    5  89999999999999998521 11356   89999999987743    456


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      +..|++++.+|+++++.+|+++|+++++++|++|++++++||+|.+.|+++|.++|++||+++++|++++.+..|     
T Consensus       135 ~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~-----  209 (406)
T 1kmj_A          135 ARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHP-----  209 (406)
T ss_dssp             HHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-----
T ss_pred             HhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCC-----
Confidence            778999999999888999999999999999999999999999999999999999999999999999998754332     


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc---------cCC---CCccCCCCC
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL---------YVS---PTVAGSRPG  391 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~---------~~~---~~~~gsr~~  391 (438)
                            ++....++|+++.++||. ++|.|+|+++.++ ++.+........|....         +..   ....|+.+.
T Consensus       210 ------~~~~~~~~d~~~~s~~K~-~g~~G~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (406)
T 1kmj_A          210 ------VDVQALDCDFYVFSGHKL-YGPTGIGILYVKE-ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNT  281 (406)
T ss_dssp             ------CCHHHHTCSEEEEEGGGT-TSCTTCEEEEECH-HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCH
T ss_pred             ------CcccccCCCEEEEEchhc-cCCCCcEEEEEeH-HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCH
Confidence                  233334689999999997 5898999988864 33322111111110000         000   001223333


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++++.++++.+...++++..++..++++++.+.|+++|++++
T Consensus       282 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  325 (406)
T 1kmj_A          282 GGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTL  325 (406)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            34445556777666667888999999999999999999888764

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.92  E-value=9.1e-25  Score=215.11  Aligned_cols=241  Identities=13%  Similarity=0.036  Sum_probs=181.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a  242 (438)
                      ..+...++.+++++++++++|.+..+   ++  ++|+|||+|+.++++++..          +++++....|++  +...
T Consensus        37 ~~~~~~~~~~~~~~~la~~~g~~~~~---~v--~~~~g~t~al~~~~~~l~~----------~~~i~~~~~~~~~~~~~~  101 (362)
T 3ffr_A           37 RSKKFEEVYKTASDNLKTLLELPSNY---EV--LFLASATEIWERIIQNCVE----------KKSFHCVNGSFSKRFYEF  101 (362)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTCCTTE---EE--EEESCHHHHHHHHHHHHCS----------SEEEEEECSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCc---EE--EEeCCchHHHHHHHHhccC----------CcEEEEcCcHHHHHHHHH
Confidence            46677788899999999999996433   14  8999999999999998752          356666665555  4457


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc-CCeEEEeccccchhhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH-GTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~-~i~lhVD~a~gg~~~pf~~  321 (438)
                      ++..|++++.+|.++++.+|+++++  ++++|++|++++|+||+|.+.|+++|+++|++| |+++|+|++++.+..    
T Consensus       102 ~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~----  175 (362)
T 3ffr_A          102 AGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP----  175 (362)
T ss_dssp             HHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS----
T ss_pred             HHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCc----
Confidence            7788999999999888999999999  788999999999999999999999999999999 999999999864332    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccccc-CCCccC----------CCCccCCCC
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW-SGGLYV----------SPTVAGSRP  390 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~-~g~~~~----------~~~~~gsr~  390 (438)
                             +.+..  .+|+++.++||++.+|.|+|+++.+++ +.+........+ ....+.          .....++.+
T Consensus       176 -------~~~~~--~~d~~~~s~~K~~~~~~G~g~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (362)
T 3ffr_A          176 -------KFDWT--KIDSVFFSVQKCFGLPAGLGVWILNDR-VIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPN  245 (362)
T ss_dssp             -------CCCTT--SCSEEEEETTSTTCCCSCCEEEEEEHH-HHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCC
T ss_pred             -------ccChh--HCcEEEEecccccCCCCceEEEEECHH-HHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCch
Confidence                   22222  289999999999777999999777654 322211111100 000000          011123333


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      ...++++.++++.+..+|++++.++..++++++.+.|+++||+++.
T Consensus       246 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  291 (362)
T 3ffr_A          246 AMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFG  291 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEES
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceec
Confidence            3445677778877777788999999999999999999999888753

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.92  E-value=1.9e-24  Score=216.81  Aligned_cols=242  Identities=15%  Similarity=0.112  Sum_probs=177.8

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh--
Q 013675          168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY--  245 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~--  245 (438)
                      ...+...++++++++++|.++++    +  ++|+|+|+++.++++++...  ..+|   ++|+++.++|++....+..  
T Consensus        66 ~~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~al~~~~~~l~~~--~~~g---d~vi~~~~~~~~~~~~~~~~~  134 (406)
T 3cai_A           66 RSAAVLDAAREAVADLVNADPGG----V--VLGADRAVLLSLLAEASSSR--AGLG---YEVIVSRLDDEANIAPWLRAA  134 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGG----E--EEESCHHHHHHHHHHHTGGG--GBTT---CEEEEETTSCGGGTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCe----E--EEeCChHHHHHHHHHHHhhc--cCCC---CEEEEcCCccHHHHHHHHHHH
Confidence            34567788999999999997654    5  89999999999988876210  1356   8999999999987665554  


Q ss_pred             --cCcEEEEeeCC-CCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          246 --FNIKLWRVPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       246 --~Gi~v~~v~~~-~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                        .|++++.+|++ +++.+|+++|+++++++|++|++++++||||.+.|+++|.++|+++|+++|+|++++.+..     
T Consensus       135 ~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-----  209 (406)
T 3cai_A          135 HRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYR-----  209 (406)
T ss_dssp             HHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTC-----
T ss_pred             HhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC-----
Confidence              69999999998 6889999999999999999999999999999999999999999999999999999864322     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcE-EEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTS-VVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g-~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                            +++....++|+++.++||+ ++|. +| +++.++ ++..........|.++ .......|+.+...++++.+++
T Consensus       210 ------~~~~~~~~~d~~~~s~~K~-~g~~-~G~~~~~~~-~~~~~l~~~~~~~~~~-~~~~~~~~t~~~~~~~a~~~al  279 (406)
T 3cai_A          210 ------LLDIRETDADVVTVNAHAW-GGPP-IGAMVFRDP-SVMNSFGSVSTNPYAT-GPARLEIGVHQFGLLAGVVASI  279 (406)
T ss_dssp             ------CCCHHHHCCSEEEEEGGGG-TSCS-CEEEEESCH-HHHHTSCCCCSCTTCC-GGGGGCCSCCCHHHHHHHHHHH
T ss_pred             ------CCCchhcCCCEEEeehhhh-cCCC-cCeEEEEeh-HHHhhcCCcccCCCCC-ccccccCCCccHHHHHHHHHHH
Confidence                  2333334689999999998 5775 78 777664 3322111111111111 0000112333333344555666


Q ss_pred             HHHcHH--------------HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          402 MSLGQE--------------GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       402 ~~~g~~--------------g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..+...              ++++..++..++++++.+.|+++|++++
T Consensus       280 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  327 (406)
T 3cai_A          280 EYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVML  327 (406)
T ss_dssp             HHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            554321              4788889999999999999999888764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.92  E-value=3.4e-24  Score=217.02  Aligned_cols=246  Identities=20%  Similarity=0.181  Sum_probs=178.9

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH---hcCC----------CCCeEEe
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRGI----------TRPEMII  231 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G~----------~~~~Viv  231 (438)
                      ..+...+...++++++++++|.++++    +  ++|+|+|+|+.++++++......   .+|-          ..++|++
T Consensus        55 ~~~~~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~  128 (432)
T 3a9z_A           55 AGRKAKDIINTARASLAKMIGGKPQD----I--IFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFIT  128 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCGGG----E--EEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcCe----E--EEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEE
Confidence            34456778889999999999997655    5  99999999999999998531111   2440          0146777


Q ss_pred             cCCCcCcHHHHH----hhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC---
Q 013675          232 PVSAHSAYDKAA----QYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG---  303 (438)
Q Consensus       232 ~~~~h~s~~~a~----~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~---  303 (438)
                      +..+|++...++    +..|++++.+|+++ ++.+|+++|+++++++|++|++++++||||.+.|+++|.++|+++|   
T Consensus       129 ~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~  208 (432)
T 3a9z_A          129 CTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIR  208 (432)
T ss_dssp             ETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHH
T ss_pred             ecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCccc
Confidence            788888875544    34699999999986 8889999999999999999999999999999999999999999999   


Q ss_pred             -------CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC
Q 013675          304 -------TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS  376 (438)
Q Consensus       304 -------i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~  376 (438)
                             +++|+|++|+.+..           +++....++|+++.++||+ ++|. +|+++++++.....   ..+.+.
T Consensus       209 ~~~~~~~~~livDea~~~~~~-----------~~~~~~~~~d~~~~s~~K~-~g~~-~G~~~~~~~~~~~~---~~~~~~  272 (432)
T 3a9z_A          209 AASGLPRVLVHTDAAQALGKR-----------RVDVEDLGVDFLTIVGHKF-YGPR-IGALYVRGVGKLTP---LYPMLF  272 (432)
T ss_dssp             HHHTCCCCEEEEECTTTTTTS-----------CCCHHHHCCSEEEEEGGGT-TCCS-CEEEEETTBTTTBC---CCCSCC
T ss_pred             ccccCCceEEEEEchhhhCCc-----------ccChhhcCCCEEEEehhHh-cCCc-ceEEEEccccccCC---cCceee
Confidence                   99999999964432           2333334689999999998 5776 99988876531111   111111


Q ss_pred             CCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          377 GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       377 g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      ++........|+.+...++++.++++.+ .+++++..++..++++++.+.|++++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~  328 (432)
T 3a9z_A          273 GGGQERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGK  328 (432)
T ss_dssp             SSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             cCCccccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            2111111122333333345566667654 4578899999999999999999886554

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.92  E-value=3.4e-24  Score=214.14  Aligned_cols=242  Identities=13%  Similarity=0.153  Sum_probs=185.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH--HH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD--KA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~--~a  242 (438)
                      .+.......++++.+++++|.+++ +    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|+++.  +.
T Consensus        46 ~~~~~~~~~~l~~~la~~~~~~~~~~----v--~~~~g~t~al~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~  111 (396)
T 2ch1_A           46 HAELFRTMDEVKDGLRYIFQTENRAT----M--CVSGSAHAGMEAMLSNLL-----EEG---DRVLIAVNGIWAERAVEM  111 (396)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCSCE----E--EESSCHHHHHHHHHHHHC-----CTT---CEEEEEESSHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHhCCCCCcE----E--EECCcHHHHHHHHHHHhc-----CCC---CeEEEEcCCcccHHHHHH
Confidence            444456677899999999999876 4    5  899999999999999875     366   89999999999974  57


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      ++..|++++.+|+++++.+|++++++++++ ++++|++++|+||||.+.|+++|.++|+++|+++++|++|+.+..    
T Consensus       112 ~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~----  187 (396)
T 2ch1_A          112 SERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGV----  187 (396)
T ss_dssp             HHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB----
T ss_pred             HHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCC----
Confidence            888999999999988889999999999988 899999999999999999999999999999999999999873222    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc---ccc-----------cCCCccCCCCccC
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA---VTE-----------WSGGLYVSPTVAG  387 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~---~~~-----------~~g~~~~~~~~~g  387 (438)
                             +++....++|+++.++||++++|.|+|+++++++ ........   ...           |... .......+
T Consensus       188 -------~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  258 (396)
T 2ch1_A          188 -------PFYMDKWEIDAVYTGAQKVLGAPPGITPISISPK-ALDVIRNRRTKSKVFYWDLLLLGNYWGCY-DEPKRYHH  258 (396)
T ss_dssp             -------CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-HHHHHHTCSSCCSCGGGCHHHHHHHTTCS-SSCCCCCC
T ss_pred             -------ccchhhcCcCEEEEcCCccccCCCCeEEEEECHH-HHHhhhhccCcccceEechHHHHHhhhhh-cccCCCCC
Confidence                   2445556789999999999889999999888753 32211000   000           1100 00011223


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.+....+++.++++.+..+++++..++..++++++.+.|+++ |+++
T Consensus       259 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  305 (396)
T 2ch1_A          259 TVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDI  305 (396)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCB
T ss_pred             CCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence            3333344566677777666788899999999999999999876 5543

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.92  E-value=1.9e-24  Score=212.12  Aligned_cols=237  Identities=12%  Similarity=0.035  Sum_probs=178.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH--HHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD--KAA  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~--~a~  243 (438)
                      .+...+...++++++++++|.++++    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|+++.  +.+
T Consensus        29 ~~~~~~~~~~l~~~la~~~g~~~~~----i--~~~~g~t~a~~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~~   94 (352)
T 1iug_A           29 TEAAREVFLKARGLLREAFRTEGEV----L--ILTGSGTLAMEALVKNLF-----APG---ERVLVPVYGKFSERFYEIA   94 (352)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSEE----E--EEESCHHHHHHHHHHHHC-----CTT---CEEEEEECSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCce----E--EEcCchHHHHHHHHHhcc-----CCC---CeEEEEeCCchhHHHHHHH
Confidence            4555667788999999999998654    4  899999999999999875     266   89999999999964  555


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhh
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~  321 (438)
                      +..|++++.+|+++++.+|++++++   ++|++|++++++||||.+.|+++|.++|++|  |+++|+|++++.+..    
T Consensus        95 ~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~----  167 (352)
T 1iug_A           95 LEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVG----  167 (352)
T ss_dssp             HHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTB----
T ss_pred             HHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCc----
Confidence            6689999999998888899999987   6789999999999999999999999999999  999999999863322    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC------ccCCCCccCCCCCchHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG------LYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~------~~~~~~~~gsr~~~~ia  395 (438)
                             +++....++|+++.++||++++|.|+|+++++++...... .  ..|...      ........++.+...++
T Consensus       168 -------~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (352)
T 1iug_A          168 -------EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLK-P--RGYYLDLARELKAQKEGESAWTPAINLVL  237 (352)
T ss_dssp             -------CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCC-C--CSSTTCHHHHHHHHTTTCCSSCCCHHHHH
T ss_pred             -------ceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhh-C--CCceeeHHHHHhhcccCCCCCCCCHHHHH
Confidence                   2333334689999999998899999999888755332100 0  000000      00001112222333345


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++.+++..+... +++..++..++++++.+.|+++ |+++
T Consensus       238 a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~  275 (352)
T 1iug_A          238 AVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRP  275 (352)
T ss_dssp             HHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence            566777665444 7888999999999999999887 6653

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=1.5e-24  Score=215.54  Aligned_cols=247  Identities=14%  Similarity=0.097  Sum_probs=177.4

Q ss_pred             chhHHHHHHHHHHHHHHHhCCC----CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC--cCcH
Q 013675          166 FQSVARFEAEVIAMTAALLGNK----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA--HSAY  239 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~----~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~--h~s~  239 (438)
                      .|.......+++++++++++..    +++    +  ++|+|||+|+.++++++...  .++|   ++|+++...  |.++
T Consensus        33 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----v--~~~~g~t~al~~~~~~~~~~--~~~g---d~vlv~~~~~~~~~~  101 (385)
T 2bkw_A           33 SPEFVSIFQRVLKNTRAVFKSAAASKSQP----F--VLAGSGTLGWDIFASNFILS--KAPN---KNVLVVSTGTFSDRF  101 (385)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCGGGTCEE----E--EEESCTTHHHHHHHHHHSCT--TCSC---CEEEEECSSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCCCce----E--EEcCchHHHHHHHHHHHhcc--CCCC---CeEEEEcCCcchHHH
Confidence            4444455666778888888764    233    5  89999999999999987410  0256   888777543  3334


Q ss_pred             HHHHhhcCcEEEEeeC-CCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccch
Q 013675          240 DKAAQYFNIKLWRVPV-DKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGF  315 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~-~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~  315 (438)
                      .++++..|++++.+|+ ++++.+|+++|++++++ +|++|++++++||||.+.|+++|.++|+++  |+++|+|++++.+
T Consensus       102 ~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~  181 (385)
T 2bkw_A          102 ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIG  181 (385)
T ss_dssp             HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred             HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccC
Confidence            5778888999999999 88899999999999987 899999999999999999999999999999  9999999998643


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc-ccch---hcccccCCCc---------cC-
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR-KHQF---VAVTEWSGGL---------YV-  381 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~-~~~~---~~~~~~~g~~---------~~-  381 (438)
                      ..           +++....++|+++.++||++++|.|+|+++++++.+. ....   .....|.+..         +. 
T Consensus       182 ~~-----------~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (385)
T 2bkw_A          182 CE-----------EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEA  250 (385)
T ss_dssp             TS-----------CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHT
T ss_pred             Cc-----------cccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhc
Confidence            32           2334445789999999999888999999888765322 1100   0000111100         00 


Q ss_pred             -CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh-hcCCCccc
Q 013675          382 -SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL-VLFPMFLP  435 (438)
Q Consensus       382 -~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L-~~~~g~~~  435 (438)
                       .....++.+...++++.++++.+...++++..++..++++++.+.| +++ ++++
T Consensus       251 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~  305 (385)
T 2bkw_A          251 GKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTS  305 (385)
T ss_dssp             TCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEE
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Ccee
Confidence             0000122222334566677776655678889999999999999999 877 6553

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.91  E-value=5.3e-24  Score=211.23  Aligned_cols=242  Identities=12%  Similarity=0.080  Sum_probs=180.1

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH--HHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD--KAA  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~--~a~  243 (438)
                      .+...++.+++++++++++|.+.+.   ++ .++|+|||+|+.++++++.     ++|   ++|+++.+.+++..  ..+
T Consensus        47 ~~~~~~~~~~~~~~la~~~g~~~~~---~~-i~~~~ggt~al~~~~~~~~-----~~g---d~vi~~~~~~~~~~~~~~~  114 (376)
T 3f0h_A           47 TTEFSSTMLENEKFMLEYAKAPEGS---KA-VFMTCSSTGSMEAVVMNCF-----TKK---DKVLVIDGGSFGHRFVQLC  114 (376)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTC---EE-EEESSCHHHHHHHHHHHHC-----CTT---CCEEEEESSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCc---eE-EEEcCChhHHHHHHHHhcc-----CCC---CeEEEEeCChhhHHHHHHH
Confidence            4566678889999999999997542   02 2458999999999999876     367   89999987666533  457


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      ...|++++.+|++.++.+|+++++++++++|++|++++++||+|.+.|+++|+++|++||+++|+|++++.+..      
T Consensus       115 ~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~------  188 (376)
T 3f0h_A          115 EIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLAD------  188 (376)
T ss_dssp             HHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS------
T ss_pred             HHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCc------
Confidence            77899999999988899999999999999999999999999999999999999999999999999999875543      


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC--cc----CCCCccCCCCCchHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG--LY----VSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~--~~----~~~~~~gsr~~~~ia~~  397 (438)
                           +++....|+|+++.++||++.+|.|+|+++.+++............+...  .+    .......+.+...++++
T Consensus       189 -----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  263 (376)
T 3f0h_A          189 -----PFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQI  263 (376)
T ss_dssp             -----CCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred             -----cccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHH
Confidence                 23444457899999999997779999997776543221110000000000  00    00000111122223667


Q ss_pred             HHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcC
Q 013675          398 WAALMSLGQE-GYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       398 ~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .+++..+... ++++..++..++++++.+.|+++
T Consensus       264 ~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (376)
T 3f0h_A          264 NERLKEIKKHGGADAEVARIASQAADFRAKIKDL  297 (376)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence            7788777666 78999999999999999999886

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.91  E-value=6.5e-24  Score=210.00  Aligned_cols=231  Identities=13%  Similarity=0.068  Sum_probs=174.7

Q ss_pred             HHHHHHHHHH-HHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCc
Q 013675          170 ARFEAEVIAM-TAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI  248 (438)
Q Consensus       170 ~~~e~~~~~~-~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi  248 (438)
                      .+...+++++ +++++|.+  +    +  ++|+|+|+|+.++++++.     .+|   ++|+++.++|+++..+++..|+
T Consensus        52 ~~~~~~l~~~~la~~~~~~--~----v--~~~~g~t~a~~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~~~g~  115 (371)
T 2e7j_A           52 TPPIHDFIHNQLPKFLGCD--V----A--RVTNGAREAKFAVMHSLA-----KKD---AWVVMDENCHYSSYVAAERAGL  115 (371)
T ss_dssp             -CCHHHHHHTHHHHHTTSS--E----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCC--E----E--EEeCChHHHHHHHHHHHh-----CCC---CEEEEccCcchHHHHHHHHcCC
Confidence            3456677888 99999987  4    6  899999999999999985     266   8999999999999999999999


Q ss_pred             EEEEee--CCCCCccCHHHHHHhhc-----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          249 KLWRVP--VDKEFRADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       249 ~v~~v~--~~~~~~~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      +++.+|  .++++.+|+++|+++++     +++++|++++++||+|.+.|+++|.++|++||+++|+|++++.+..|   
T Consensus       116 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~---  192 (371)
T 2e7j_A          116 NIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMP---  192 (371)
T ss_dssp             EEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBC---
T ss_pred             eEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCC---
Confidence            999999  88789999999999998     78999999999999999999999999999999999999999875542   


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                              ++....++|+++.++||++++|.++|+++.+++..........   .+.........++.+...++++.+++
T Consensus       193 --------~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~l  261 (371)
T 2e7j_A          193 --------VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSE---KYKNKEVELLGCTARGATIITLMASF  261 (371)
T ss_dssp             --------CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCS---SCTTSBGGGTTCCCCSHHHHHHHHHH
T ss_pred             --------CChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccc---cCcccccccccCCcCHHHHHHHHHHH
Confidence                    2233345799999999987888899999887653221010000   01100000002233333344555666


Q ss_pred             HHHcHHHHHHHHHHH--HHHHHHHHHHhhcCCCccc
Q 013675          402 MSLGQEGYLENTKAI--MEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       402 ~~~g~~g~~~~~~~~--~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.+..    +..++.  .++++++.+.|+++ ++++
T Consensus       262 ~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~  292 (371)
T 2e7j_A          262 PHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQ  292 (371)
T ss_dssp             HHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEE
Confidence            55432    566777  88999999999877 6543

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.90  E-value=5.6e-23  Score=205.00  Aligned_cols=243  Identities=14%  Similarity=0.121  Sum_probs=182.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DK  241 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~  241 (438)
                      ..++.+.++.+++++.+++++|.+ ..    +  ++|+|||+|+.+++..+      .+|   ++|+++...|++.  ..
T Consensus        28 h~~~~~~~~~~~~~~~l~~~~~~~-~~----v--~~~~sgt~a~~~~~~~~------~~g---d~vi~~~~~~~~~~~~~   91 (379)
T 3ke3_A           28 HMSKAFQEVMNDLLSNLKTVYNAE-AA----V--IIPGSGTYGMEAVARQL------TID---EDCLIIRNGWFSYRWTQ   91 (379)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHTCS-EE----E--EEESCHHHHHHHHHHHH------CTT---CEEEEEECSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCC-CE----E--EEcCChhHHHHHHHHhC------CCC---CeEEEEeCCchhHHHHH
Confidence            346777889999999999999997 33    4  88999999999987543      256   8999999888763  35


Q ss_pred             HHhhcCc--EEEEeeCCCC---------CccCHHHHHHhhc-cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          242 AAQYFNI--KLWRVPVDKE---------FRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       242 a~~~~Gi--~v~~v~~~~~---------~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      .++..|+  +++.++++..         +.+|+++++++++ ++|++|++++++|++|.+.|   +++|+++|++||+++
T Consensus        92 ~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~l  171 (379)
T 3ke3_A           92 ILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLL  171 (379)
T ss_dssp             HHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEE
Confidence            5666664  8888887532         2589999999996 48999999999999999999   999999999999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC--------
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG--------  378 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~--------  378 (438)
                      |+|++++ +..           +++....|+|++++++||++.+|.|+|+++.+++............+...        
T Consensus       172 i~D~~~~-g~~-----------~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  239 (379)
T 3ke3_A          172 VIDCIAS-GCV-----------WLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIM  239 (379)
T ss_dssp             EEECTTC-TTC-----------CCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHH
T ss_pred             EEEeccc-CCc-----------cccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHH
Confidence            9999976 322           35555568999999999998899999998887543221110000011000        


Q ss_pred             -cc--CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          379 -LY--VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       379 -~~--~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                       .+  ......++.+...++++.+++..+..+|++++.++..++++++++.|+++ |+++
T Consensus       240 ~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~  298 (379)
T 3ke3_A          240 RAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIES  298 (379)
T ss_dssp             HHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence             00  00111234444556778888888878889999999999999999999887 5554

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.90  E-value=1.7e-22  Score=201.47  Aligned_cols=240  Identities=16%  Similarity=0.158  Sum_probs=178.4

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      .|...++..++++++.+++.+.+|.+  +++    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|+++
T Consensus        62 ~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~----v--~~~~g~~~a~~~~~~~~~-----~~g---d~vl~~~~~~~~~  127 (388)
T 1j32_A           62 RYGPAAGEPRLREAIAQKLQRDNGLCYGADN----I--LVTNGGKQSIFNLMLAMI-----EPG---DEVIIPAPFWVSY  127 (388)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEESSCCTHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCChhh----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEEcCCCChhH
Confidence            34444567788999999999988864  333    5  899999999999999875     367   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ..+++..|++++.+|+++  ++.+|+++|++++++++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|++
T Consensus       128 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~  207 (388)
T 1j32_A          128 PEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEK  207 (388)
T ss_dssp             HHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             HHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchh
Confidence            999999999999999985  6789999999999999999999999999999954   89999999999999999999987


Q ss_pred             hhhhhhhhcCCCCCCC-ccC--CCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          315 FVLPFAKKLGYPIPPF-DFS--VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~-~~~--~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      +...     |.+.+++ .+.  ..+.|++..++||+ ++++|  +|+++.+++ +.+........   ..          
T Consensus       208 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~sK~-~~~~G~r~G~~~~~~~-~~~~l~~~~~~---~~----------  267 (388)
T 1j32_A          208 ILYD-----DAQHLSIGAASPEAYERSVVCSGFAKT-YAMTGWRVGFLAGPVP-LVKAATKIQGH---ST----------  267 (388)
T ss_dssp             CBCT-----TCCCCCGGGSCHHHHHTEEEEEESTTT-TTCTTTCCEEEECCHH-HHHHHHHHHHT---TT----------
T ss_pred             cccC-----CCCCCCHHHccccccCCEEEEeechhc-cCCcccceEEEEeCHH-HHHHHHHHHhh---cc----------
Confidence            6531     1101111 111  13578999999999 46666  899876543 32221111000   00          


Q ss_pred             CCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          390 PGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       390 ~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+....+++++...+  +.+.+++..++..++++++.+.|+++|++++
T Consensus       268 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  315 (388)
T 1j32_A          268 SNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLEC  315 (388)
T ss_dssp             CSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBC
T ss_pred             cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence            000112333333333  4566788889999999999999999888764

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.90  E-value=5.6e-23  Score=202.41  Aligned_cols=239  Identities=18%  Similarity=0.163  Sum_probs=174.9

Q ss_pred             HHHHHHHHHHHHHhCCCCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCc-HHHHHhhcC
Q 013675          171 RFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSA-YDKAAQYFN  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s-~~~a~~~~G  247 (438)
                      ....++++++++++|.+.+ +   ++  ++|+|||+|+.+++++++.     +|   ++|+++ .+.|++ +..++...|
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~---~v--~~~~g~t~a~~~~~~~~~~-----~g---d~vi~~~~~~~~~~~~~~~~~~g  103 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYT---SV--LLQGSGSYAVEAVLGSALG-----PQ---DKVLIVSNGAYGARMVEMAGLMG  103 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEE---EE--EEESCHHHHHHHHHHHSCC-----TT---CCEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCcCc---EE--EEecChHHHHHHHHHHhcC-----CC---CeEEEEeCCCccHHHHHHHHHhC
Confidence            4566778889999994321 1   14  8999999999999999852     56   777665 477776 667888889


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhcc--CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGY  325 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~  325 (438)
                      ++++.+|+++++.+|+++|++++++  ++++|++++++||+|.+.|+++|.++|++||+++|+|++++.+..        
T Consensus       104 ~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~--------  175 (366)
T 1m32_A          104 IAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI--------  175 (366)
T ss_dssp             CCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS--------
T ss_pred             CceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCc--------
Confidence            9999999988888999999999986  478999999999999999999999999999999999999874332        


Q ss_pred             CCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC---cc----CC-CCccCCCCCchHHHH
Q 013675          326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG---LY----VS-PTVAGSRPGGLIAGA  397 (438)
Q Consensus       326 ~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~---~~----~~-~~~~gsr~~~~ia~~  397 (438)
                         +++....++|+++.++||++++|.|+|+++.+++.. +........+...   .+    .. ....++.+...++++
T Consensus       176 ---~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  251 (366)
T 1m32_A          176 ---PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKL-AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAF  251 (366)
T ss_dssp             ---CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHH-TTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred             ---CccccccCccEEEecCcccccCCCceEEEEECHHHH-HhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHH
Confidence               233344568999999999988999999998876432 2111000000000   00    00 000122222334566


Q ss_pred             HHHHHHHcHHH-HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          398 WAALMSLGQEG-YLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       398 ~aal~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .++++.+...| +++..++..++++++.+.|+++ ++++
T Consensus       252 ~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~  289 (366)
T 1m32_A          252 AQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNT  289 (366)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCee
Confidence            67777666666 8889999999999999999887 6543

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=208.85  Aligned_cols=241  Identities=15%  Similarity=0.041  Sum_probs=183.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YD  240 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~  240 (438)
                      ..++.+.++.+++++.+++++|++++.   ++  +| |+|||+|+.+++..+..   .++|   |++++....|.+  +.
T Consensus        51 hr~~~~~~~~~~ar~~la~ll~~~~~~---ev--if~t~~~T~a~n~a~~~l~~---~~~G---d~v~~~~~g~~~~~~~  119 (377)
T 3e77_A           51 HRSSDFAKIINNTENLVRELLAVPDNY---KV--IFLQGGGCGQFSAVPLNLIG---LKAG---RCADYVVTGAWSAKAA  119 (377)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHTCCTTE---EE--EEESSHHHHHHHHHHHHHGG---GSTT---CEEEECCCSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCC---eE--EEEcCchHHHHHHHHHhccC---CCCC---CeEEEEECCHHHHHHH
Confidence            346778889999999999999997632   15  77 68999999999998752   1236   888877777665  44


Q ss_pred             HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      +.++.+|..++.+|+++++..++++++.+++++|++|.+++.+|.+|++.|+     +|+++|+++|||++++.+..   
T Consensus       120 ~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~---  191 (377)
T 3e77_A          120 EEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSK---  191 (377)
T ss_dssp             HHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSS---
T ss_pred             HHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCC---
Confidence            5667779888888987777788888888899999999999999999999998     47889999999999654333   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC--CccCCCCccCCCCCchHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG--GLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g--~~~~~~~~~gsr~~~~ia~~~  398 (438)
                              ++|+...+  .+++++|||+ +|+|+|++++|++.+.+.. ...+.+..  .........|+.+-..++++.
T Consensus       192 --------~id~~~~~--~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~-~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~  259 (377)
T 3e77_A          192 --------PVDVSKFG--VIFAGAQKNV-GSAGVTVVIVRDDLLGFAL-RECPSVLEYKVQAGNSSLYNTPPCFSIYVMG  259 (377)
T ss_dssp             --------CCCGGGCS--EEEEEGGGTT-SCTTCEEEEEETTSCSCCC-TTSCGGGCHHHHHTTTTCSSCCCHHHHHHHH
T ss_pred             --------CCchhhcC--EEEEeccccc-CCCccEEEEEcHHHHhhcc-CCCCchhhHHHHhhcCCCCCCchHHHHHHHH
Confidence                    46776665  5889999996 8999999999876543221 11111100  000112234555556688899


Q ss_pred             HHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          399 AALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       399 aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++++++-.+ |++++.++..+++++++++|+++||+++
T Consensus       260 ~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~  297 (377)
T 3e77_A          260 LVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV  297 (377)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEE
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence            999988888 8999999999999999999999988763

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.89  E-value=1.7e-22  Score=203.14  Aligned_cols=237  Identities=14%  Similarity=0.147  Sum_probs=171.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH-HhcCCCCCe-EEecCCCcCcHHHHH----h
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR-NKRGITRPE-MIIPVSAHSAYDKAA----Q  244 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~-~~~G~~~~~-Viv~~~~h~s~~~a~----~  244 (438)
                      +...++++++++++|.++++    +  ++|+|+|+++..++++++.... ..+|   ++ |+++...|++...++    +
T Consensus        71 ~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~al~~al~~~~~~~~~~~~g---d~vii~~~~~~~~~~~~~~~~~~  141 (416)
T 1qz9_A           71 DLSERLGNRLATLIGARDGE----V--VVTDTTSINLFKVLSAALRVQATRSPE---RRVIVTETSNFPTDLYIAEGLAD  141 (416)
T ss_dssp             GHHHHHHHHHHTTTTCCTTS----E--EECSCHHHHHHHHHHHHHHHHHHHSTT---CCEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCccc----E--EEeCChhHHHHHHHHhhcccccccCCC---CcEEEEcCCCCCchHHHHHHHHH
Confidence            55667888999999997655    5  8899999999999888753211 1255   65 666778998765543    3


Q ss_pred             hc--CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          245 YF--NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       245 ~~--Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      ..  |++++.+|+       +++|+++|+++|++|++++++||||.+.|+++|.++|+++|+++|+|++++.+..     
T Consensus       142 ~~~~g~~~~~v~~-------~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-----  209 (416)
T 1qz9_A          142 MLQQGYTLRLVDS-------PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV-----  209 (416)
T ss_dssp             HHCSSCEEEEESS-------GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-----
T ss_pred             HhcCCceEEEeCc-------HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCc-----
Confidence            34  999999986       7899999999999999999999999999999999999999999999999863322     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCc-EEEEEecccccccchhcccccCCCc--------cC-----CCCccCC
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGT-SVVLYRNREIRKHQFVAVTEWSGGL--------YV-----SPTVAGS  388 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~-g~l~~r~~~~~~~~~~~~~~~~g~~--------~~-----~~~~~gs  388 (438)
                            +++....++|++++++||+++++.|+ |+++.+++...... .....|.+..        +.     .....|+
T Consensus       210 ------~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~-~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~  282 (416)
T 1qz9_A          210 ------PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP-QPLSGWFGHSRQFAMEPRYEPSNGIARYLCGT  282 (416)
T ss_dssp             ------CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSC-CSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSC
T ss_pred             ------CCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccC-CCccccCccccccCCCCccCCCcchHHhcCCC
Confidence                  22333346899999999998777887 99888755321111 1111111110        00     0011223


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC-C--Cccc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF-P--MFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~--g~~~  435 (438)
                      .+...++++.++++.+..+++++..++..++++++.+.|+++ |  ++++
T Consensus       283 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~  332 (416)
T 1qz9_A          283 QPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTL  332 (416)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEE
Confidence            333345566778877766788899999999999999999885 6  6654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.89  E-value=5.7e-22  Score=194.83  Aligned_cols=231  Identities=16%  Similarity=0.148  Sum_probs=170.8

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH--HHh
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK--AAQ  244 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~--a~~  244 (438)
                      .+..++.+++++++++++|.++++    +  ++|+|||+|+..++++++.     +|   ++|+++.++|+++..  .++
T Consensus        45 ~g~~~~~~~~~~~l~~~~g~~~~~----v--~~~~g~t~a~~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~~~  110 (359)
T 1svv_A           45 YGQDSHCAKAARLIGELLERPDAD----V--HFISGGTQTNLIACSLALR-----PW---EAVIATQLGHISTHETGAIE  110 (359)
T ss_dssp             TTCSHHHHHHHHHHHHHHTCTTSE----E--EEESCHHHHHHHHHHHHCC-----TT---EEEEEETTSHHHHSSTTHHH
T ss_pred             ccccHHHHHHHHHHHHHhCCCCcc----E--EEeCCchHHHHHHHHHHhC-----CC---CEEEEcccchHHHHHHHHHh
Confidence            344677889999999999987664    5  8999999999999999863     66   899999999999888  488


Q ss_pred             hcCcEEEEeeCCCCCccCHHHHHHhhccC-------cEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          245 YFNIKLWRVPVDKEFRADVKAIKKYINRN-------TVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~-------t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ..|++++.+|.+ ++.+|+++|+++++++       +++|+++++ ||+|.+.|   +++|.++|++||+++|+|+++++
T Consensus       111 ~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~  188 (359)
T 1svv_A          111 ATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLA  188 (359)
T ss_dssp             HTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHH
T ss_pred             cCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchh
Confidence            889999999986 7889999999999876       899999999 68999988   89999999999999999999966


Q ss_pred             hhhhhhhhcCCCCCCCccCC----CCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675          315 FVLPFAKKLGYPIPPFDFSV----QGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~----~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~  390 (438)
                      +...      . . +.+...    .++|++++++||+ ++|.|+|+++.++ ++.+......  ..++..    ..   .
T Consensus       189 ~~~~------~-~-~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~-~~~~~~~~~~--~~~~~~----~~---~  249 (359)
T 1svv_A          189 SALS------S-P-VNDLTLADIARLTDMFYIGATKA-GGMFGEALIILND-ALKPNARHLI--KQRGAL----MA---K  249 (359)
T ss_dssp             HHHT------S-T-TCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSG-GGCTTHHHHH--HHTTCC----CT---T
T ss_pred             hhhc------C-C-CcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcc-cHHHHHHHHH--hcCCcc----cc---c
Confidence            5432      1 1 122221    3469999999999 5688889877754 3332211100  001100    00   0


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +......++  ..+...++++..++..++++++.+.| +.+++++
T Consensus       250 ~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~  291 (359)
T 1svv_A          250 GWLLGIQFE--VLMKDNLFFELGAHSNKMAAILKAGL-EACGIRL  291 (359)
T ss_dssp             THHHHHHHH--HHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCB
T ss_pred             chhhHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEE
Confidence            111111122  23455677888999999999999999 5667654

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.89  E-value=7.8e-22  Score=195.33  Aligned_cols=233  Identities=13%  Similarity=-0.026  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++++|.+  +    +  ++|+|||+|+.+++++++..  .++|   ++|+++.++|+++..++...|++++.
T Consensus        34 ~~~l~~~la~~~~~~--~----v--~~~~ggt~al~~~~~~~~~~--~~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~  100 (375)
T 2fnu_A           34 SLLFEEALCEFLGVK--H----A--LVFNSATSALLTLYRNFSEF--SADR---NEIITTPISFVATANMLLESGYTPVF  100 (375)
T ss_dssp             HHHHHHHHHHHHTCS--E----E--EEESCHHHHHHHHHHHSSCC--CTTS---CEEEECSSSCTHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhCCC--e----E--EEeCCHHHHHHHHHHHhccc--CCCC---CEEEECCCccHhHHHHHHHCCCEEEE
Confidence            446777889999986  3    5  89999999999999987310  1256   89999999999999999999999999


Q ss_pred             eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      +|+++++.+|+++|+++++++|++|+++++   +|.+.|+++|.++|++||+++|+|++++.+..+...       .+  
T Consensus       101 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~-------~~--  168 (375)
T 2fnu_A          101 AGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNK-------KV--  168 (375)
T ss_dssp             CCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTE-------ET--
T ss_pred             eccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCe-------ec--
Confidence            999887789999999999999999888887   899999999999999999999999999755432100       01  


Q ss_pred             CCC-CccEEEeCCCCCCCCCCCcEEEEEe-cccccccchhcccccC----CCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          333 SVQ-GVTSISVDVHKYGLAPKGTSVVLYR-NREIRKHQFVAVTEWS----GGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       333 ~~~-gvdsis~s~hK~~~~p~g~g~l~~r-~~~~~~~~~~~~~~~~----g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                      ... .+++.++++||++ +| |.|+++++ ++++.+..........    ...+ .....+.+.+..  .+.+++.....
T Consensus       169 ~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~a~~~~~~  243 (375)
T 2fnu_A          169 GGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEG-EVKSIGHNFRLN--EIQSALGLSQL  243 (375)
T ss_dssp             TSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCE-EESSCCCBCCCC--HHHHHHHHHHH
T ss_pred             cccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHHHHhcCCcccccccc-ccccccccCCCC--HHHHHHHHHHH
Confidence            111 3677788889994 77 88888885 3444322111100000    0000 001112221222  22222322345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +++++..++..++++++.+.|+++|++++
T Consensus       244 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  272 (375)
T 2fnu_A          244 KKAPFLMQKREEAALTYDRIFKDNPYFTP  272 (375)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTCSSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence            67888999999999999999999888764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.89  E-value=8.7e-22  Score=196.08  Aligned_cols=238  Identities=15%  Similarity=0.101  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          169 VARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      ..++++++.+++++.+|.  ++++    +  ++|+|+|+|+.++++++.     ++|   ++|+++.++|.++..+++..
T Consensus        64 ~~~l~~~la~~l~~~~g~~~~~~~----i--~~~~g~~~a~~~~~~~l~-----~~g---d~vl~~~~~~~~~~~~~~~~  129 (391)
T 3dzz_A           64 PAEYYKAVADWEEIEHRARPKEDW----C--VFASGVVPAISAMVRQFT-----SPG---DQILVQEPVYNMFYSVIEGN  129 (391)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCGGG----E--EEESCHHHHHHHHHHHHS-----CTT---CEEEECSSCCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhCCCCCHHH----E--EECCCHHHHHHHHHHHhC-----CCC---CeEEECCCCcHHHHHHHHHc
Confidence            467888999999999994  4444    6  899999999999999875     367   89999999999999999999


Q ss_pred             CcEEEEeeCCC---CCccCHHHHHHhhc-cCcEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          247 NIKLWRVPVDK---EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       247 Gi~v~~v~~~~---~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      |.+++.+|++.   ++.+|+++|+++++ +++++|++++|+||+|.+   +++++|+++|++||+++|+|++|+++... 
T Consensus       130 g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-  208 (391)
T 3dzz_A          130 GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLT-  208 (391)
T ss_dssp             TCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS-
T ss_pred             CCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCC-
Confidence            99999999852   45599999999998 789999999999999999   77999999999999999999999866531 


Q ss_pred             hhhcCCCCCCCccCC-CCcc--EEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675          320 AKKLGYPIPPFDFSV-QGVT--SISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~-~gvd--sis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                          |....++.... ...|  +++.++||++. .+.++|+++.+++++............         ..+-+....+
T Consensus       209 ----g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  275 (391)
T 3dzz_A          209 ----DEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAG---------IGEPNLLAIP  275 (391)
T ss_dssp             ----SCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHT---------CSSCCTTHHH
T ss_pred             ----CCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhc---------cCCCCHHHHH
Confidence                11011111111 1134  88999999953 445689988875655433211100000         0011112234


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      ++.+++.. +.+.+++..++..++++++.+.|++ +|++++
T Consensus       276 a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  315 (391)
T 3dzz_A          276 AAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKV  315 (391)
T ss_dssp             HHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence            45555544 5667888999999999999999998 888764

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.88  E-value=7.6e-22  Score=197.22  Aligned_cols=238  Identities=12%  Similarity=0.069  Sum_probs=175.1

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      .|...++..++++++.+++.+.+|.+  +++    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|+++
T Consensus        73 ~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~----v--~~~~g~t~al~~~~~~l~-----~~g---d~Vl~~~~~~~~~  138 (389)
T 1o4s_A           73 KYTDPRGIYELREGIAKRIGERYKKDISPDQ----V--VVTNGAKQALFNAFMALL-----DPG---DEVIVFSPVWVSY  138 (389)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHTCCCCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCTTH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH----E--EEecCHHHHHHHHHHHhC-----CCC---CEEEEcCCCchhH
Confidence            34334567788888888888888874  443    5  899999999999999874     366   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ...++..|++++.+|+++  ++.+|+++|++++++++++|++++|+||+|.+.|   +++|+++|+++|+++++|++|++
T Consensus       139 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~  218 (389)
T 1o4s_A          139 IPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDS  218 (389)
T ss_dssp             HHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             HHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            999999999999999975  5789999999999989999999999999999977   99999999999999999999987


Q ss_pred             hhhhhhhhcCCCCCCCccC-CCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          315 FVLPFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~-~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      +...     |...+...+. ..+.|+++.++||++ +++|  +|+++.++ ++.+........+.             .+
T Consensus       219 ~~~~-----g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~l~~~~-~~~~~l~~~~~~~~-------------~~  278 (389)
T 1o4s_A          219 LVYT-----DEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSE-KVATAVSKIQSHTT-------------SC  278 (389)
T ss_dssp             SBCS-----SCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCH-HHHHHHHHHHHHHT-------------CS
T ss_pred             cccC-----CCCCCHhhcCCCCCcEEEEeechhhc-CCcccceEEEEeCH-HHHHHHHHHhhhcc-------------cC
Confidence            6531     1000001111 246799999999994 5555  89887754 33322111111000             00


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ....+++++...+.. ++++..++..++++++.+.|+++ ++++
T Consensus       279 ~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~  320 (389)
T 1o4s_A          279 INTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVKF  320 (389)
T ss_dssp             CCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred             CCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCee
Confidence            011234444444432 37778888899999999999886 5543

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.88  E-value=6.7e-22  Score=195.63  Aligned_cols=225  Identities=16%  Similarity=0.149  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          174 AEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       174 ~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      .++++.+++++|. ++++    +  ++|+|||+|+.++++++.     ++|   ++|+++.++|.++...++..|++++.
T Consensus        70 ~~l~~~la~~~g~~~~~~----i--~~~~g~t~a~~~~~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~  135 (367)
T 3euc_A           70 EALRAKLKEVMQVPAGME----V--LLGNGSDEIISMLALAAA-----RPG---AKVMAPVPGFVMYAMSAQFAGLEFVG  135 (367)
T ss_dssp             HHHHHHHHHHHTCCTTCE----E--EEEEHHHHHHHHHHHHTC-----CTT---CEEEEEESCSCCSCHHHHTTTCEEEE
T ss_pred             HHHHHHHHHHhCCCCcce----E--EEcCCHHHHHHHHHHHHc-----CCC---CEEEEcCCCHHHHHHHHHHcCCeEEE
Confidence            3566678889998 4443    5  899999999999999875     367   89999999999999999999999999


Q ss_pred             eeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCcccc---CHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCC
Q 013675          253 VPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIID---PIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~id---di~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      +|+++++.+|++++++++++ +|++|++++|+||+|.+.   ++++|+++|++|  |+++++|++|+++...     +. 
T Consensus       136 v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~-----~~-  209 (367)
T 3euc_A          136 VPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQE-----SW-  209 (367)
T ss_dssp             EECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSC-----CS-
T ss_pred             ecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhccc-----ch-
Confidence            99999999999999999998 899999999999999995   477888889999  9999999999865410     10 


Q ss_pred             CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          327 IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       327 ~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                      .  ......+.+++..++||++..+.++|+++.+ +++..........|            +-+....+++.++++.  .
T Consensus       210 ~--~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~a~~~~l~~--~  272 (367)
T 3euc_A          210 M--SRLTDFGNLLVMRTVSKLGLAGIRLGYVAGD-PQWLEQLDKVRPPY------------NVNVLTEATALFALEH--V  272 (367)
T ss_dssp             G--GGGGTCTTEEEEEECCCTTSCSCCEEEEEEC-HHHHHHHGGGCCSS------------CCCHHHHHHHHHHHTT--H
T ss_pred             H--HHHhhCCCEEEEecchhhcccccCceeeeeC-HHHHHHHHHhCCCC------------CCCHHHHHHHHHHhcC--H
Confidence            1  1223345678888999996566678988774 43332211111111            1111122333444432  4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +++++..++..++++++.+.|+++|++++
T Consensus       273 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~  301 (367)
T 3euc_A          273 AVLDEQAAQLRAERSRVAEGMAAHGGVTV  301 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            66788899999999999999999988763

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.88  E-value=4.9e-21  Score=190.91  Aligned_cols=242  Identities=17%  Similarity=0.158  Sum_probs=174.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCc-cceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQ-VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~-v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      |...++..++++++.+++.+.+|.+.+.  ++ +  ++|+|||+|+.++++++.     .+|   ++|+++.++|+++..
T Consensus        59 y~~~~g~~~l~~~la~~~~~~~g~~~~~--~~~v--~~~~g~~~a~~~~~~~~~-----~~g---d~vl~~~~~~~~~~~  126 (389)
T 1gd9_A           59 YGPNIGLLELREAIAEKLKKQNGIEADP--KTEI--MVLLGANQAFLMGLSAFL-----KDG---EEVLIPTPAFVSYAP  126 (389)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCT--TTSE--EEESSTTHHHHHHHTTTC-----CTT---CEEEEEESCCTTHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCeE--EEcCChHHHHHHHHHHhC-----CCC---CEEEEcCCCchhHHH
Confidence            4334566788888888888888853221  12 4  899999999999998874     256   899999999999999


Q ss_pred             HHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchh
Q 013675          242 AAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      +++..|++++.+|+++  ++.+|+++|++++++++++|++++|+||||.+.|   +++|+++|++||+++++|++|+++.
T Consensus       127 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  206 (389)
T 1gd9_A          127 AVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFI  206 (389)
T ss_dssp             HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred             HHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence            9999999999999985  5679999999999989999999999999999975   8999999999999999999998765


Q ss_pred             hhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          317 LPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       317 ~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      ..     |.+.+++ .+. ..+.|+++.++||+ ++++|  +|+++.++ ++.+........+.          ++.+..
T Consensus       207 ~~-----~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~~-~~~~~l~~~~~~~~----------~~~~~~  269 (389)
T 1gd9_A          207 YD-----DARHYSIASLDGMFERTITVNGFSKT-FAMTGWRLGFVAAPS-WIIERMVKFQMYNA----------TCPVTF  269 (389)
T ss_dssp             CT-----TCCCCCGGGSTTCGGGEEEEEESTTT-TTCGGGCCEEEECCH-HHHHHHHHHHTTTT----------CSCCHH
T ss_pred             cC-----CCCCCCHhhccCCCCCEEEEecChhh-cCCcccceEEEEECH-HHHHHHHHHHhhhc----------cCCCHH
Confidence            41     1000011 111 24578999999998 56555  79887763 33322111111110          011111


Q ss_pred             hHHHHHHHHHHHcHH--HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          393 LIAGAWAALMSLGQE--GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       393 ~ia~~~aal~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..+++.++++. +..  ++++..++..++++++.+.|+++ |+++
T Consensus       270 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  312 (389)
T 1gd9_A          270 IQYAAAKALKD-ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPT  312 (389)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred             HHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence            12233333332 334  67888889999999999999887 5543

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.88  E-value=4.8e-21  Score=191.15  Aligned_cols=237  Identities=16%  Similarity=0.157  Sum_probs=171.8

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      +|....+..++++++.+++.+.+|.+  +++    +  ++|+||++|+.++++++.     .+|   ++|+++.++|+.+
T Consensus        63 ~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~g~~~al~~~~~~l~-----~~g---d~Vlv~~p~y~~~  128 (385)
T 1b5p_A           63 KYAPPAGIPELREALAEKFRRENGLSVTPEE----T--IVTVGGSQALFNLFQAIL-----DPG---DEVIVLSPYWVSY  128 (385)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHTTCCCCCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCTHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCChHH----E--EEcCChHHHHHHHHHHhc-----CCC---CEEEEcCCCchhH
Confidence            34334456778888888888877764  343    6  899999999999999875     367   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ..+++..|++++.+|+++  ++.+|+++++++++++|++|++++|+||||.+.+   +++|+++|++||+++++|++|+.
T Consensus       129 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~  208 (385)
T 1b5p_A          129 PEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEH  208 (385)
T ss_dssp             HHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             HHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchh
Confidence            999999999999999985  5689999999999989999999999999999866   88999999999999999999986


Q ss_pred             hhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          315 FVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      +...     |. .+++ +... +.+++..+++|. ++++|  +|+++.++ ++.+........+.            . +
T Consensus       209 ~~~~-----~~-~~~~~~~~~-~~~i~~~s~SK~-~~~~G~RiG~~~~~~-~~~~~l~~~~~~~~------------~-~  266 (385)
T 1b5p_A          209 LLYE-----GE-HFSPGRVAP-EHTLTVNGAAKA-FAMTGWRIGYACGPK-EVIKAMASVSRQST------------T-S  266 (385)
T ss_dssp             CBSS-----SC-CCCGGGTCT-TTEEEEEESTTT-TTCGGGCCEEEECCH-HHHHHHHHHHHTTT------------C-S
T ss_pred             cccC-----CC-CCCHHHcCC-CCEEEEEechhh-cCCcccceEEEEeCH-HHHHHHHHHHhhcc------------C-C
Confidence            5431     00 1111 1111 567888899999 56556  89987753 33322111111100            0 0


Q ss_pred             chHHHHHHHHHHH-----cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          392 GLIAGAWAALMSL-----GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       392 ~~ia~~~aal~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ....+++++...+     +.+.+++..++..+.++++.+.|+++ |+++
T Consensus       267 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  314 (385)
T 1b5p_A          267 PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKA  314 (385)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCB
T ss_pred             CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence            0111333332223     34557778888888999999999876 5543

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.87  E-value=1.6e-21  Score=200.90  Aligned_cols=242  Identities=14%  Similarity=0.098  Sum_probs=173.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---  241 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---  241 (438)
                      ..+...++|+++++++++++|+++++...++  .+++ |++++..++.++.     ++|   |+|+++...|.++..   
T Consensus        84 ~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V--~~~s-Gs~an~~~~~all-----~pG---D~Vl~~~~~~~~~~~~~~  152 (483)
T 1rv3_A           84 GTEHIDELETLCQKRALQAYGLDPQCWGVNV--QPYS-GSPANFAVYTALV-----EPH---GRIMGLDLPDGGHLTHGF  152 (483)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCTTTEEEEC--CCSS-HHHHHHHHHHHHT-----CTT---CEEEEECGGGTCCGGGCC
T ss_pred             cchhHHHHHHHHHHHHHHHhCCCcccCceEE--EECC-cHHHHHHHHHHhc-----CCC---CEEEEecCccCcCcchhh
Confidence            3456788999999999999999853200003  4555 5588888888775     377   999999999887653   


Q ss_pred             -----HHhhcC--cEEEEeeCC-CCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675          242 -----AAQYFN--IKLWRVPVD-KEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       242 -----a~~~~G--i~v~~v~~~-~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~  312 (438)
                           .+...|  ++.+.++++ +++.+|+++|+++++ ++|++|++ +++|++ .+.|+++|+++|+++|+++++|+++
T Consensus       153 ~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah  230 (483)
T 1rv3_A          153 MTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAH  230 (483)
T ss_dssp             BCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             hhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccc
Confidence                 234445  455555557 478999999999998 78999999 888877 8899999999999999999999998


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc-----------ccchhcccccCCCccC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR-----------KHQFVAVTEWSGGLYV  381 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~-----------~~~~~~~~~~~g~~~~  381 (438)
                      +.+..+    .|....++    .++|+++.++||++.||.| |+++++++...           .........      .
T Consensus       231 ~~g~~~----~~~~~~p~----~~~div~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~------~  295 (483)
T 1rv3_A          231 ISGLVV----AGVVPSPF----EHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLINSA------V  295 (483)
T ss_dssp             THHHHH----HTSSCCGG----GTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHHHHH------H
T ss_pred             hhcccc----cCCCCCCC----CCCcEEEecCcccCCCCCc-eEEEEcchhhhhccccCcchhhHHHHHhhhh------c
Confidence            755543    12100011    2689999999999889988 99998865220           000000000      0


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+...|+.....++++.+++......++++..++..++++++.+.|+++ |+++
T Consensus       296 ~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  348 (483)
T 1rv3_A          296 FPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKI  348 (483)
T ss_dssp             TTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             CCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEe
Confidence            0112334444456777888887766789999999999999999999887 6654

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.87  E-value=4.1e-21  Score=190.65  Aligned_cols=229  Identities=14%  Similarity=0.051  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++++|.+  .    +  ++|+|||+|+.++++++..    ++|   ++|+++..+|+++..+++..|++++.
T Consensus        38 ~~~l~~~la~~~~~~--~----~--i~~~sgt~al~~~l~~l~~----~~g---d~Vi~~~~~~~~~~~~~~~~g~~~~~  102 (373)
T 3frk_A           38 DKKFEQEFADYCNVN--Y----C--IGCGNGLDALHLILKGYDI----GFG---DEVIVPSNTFIATALAVSYTGAKPIF  102 (373)
T ss_dssp             HHHHHHHHHHHHTSS--E----E--EEESCHHHHHHHHHHHTTC----CTT---CEEEEETTSCTHHHHHHHHHSCEEEE
T ss_pred             HHHHHHHHHHHhCCC--e----E--EEeCCHHHHHHHHHHHcCC----CCc---CEEEECCCCcHHHHHHHHHcCCEEEE
Confidence            344555788888886  2    3  8999999999999998721    356   89999999999999999999999999


Q ss_pred             eeCC-CCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          253 VPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       253 v~~~-~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      +|++ +++.+|+++++++++++|++|+   ++|++|.+.|+++|.++|+++|+++|+|++++.+..            ++
T Consensus       103 ~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~------------~~  167 (373)
T 3frk_A          103 VEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSL------------YK  167 (373)
T ss_dssp             ECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCE------------ET
T ss_pred             EeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCE------------EC
Confidence            9998 4789999999999999999888   556799999999999999999999999999874432            11


Q ss_pred             cCCCC--ccEEEeC--CCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          332 FSVQG--VTSISVD--VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       332 ~~~~g--vdsis~s--~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      ....+  .|+++++  .||++.++...|+++.+++++.+........+....+ .....|......  ++.+++.....+
T Consensus       168 ~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~g~~~~~~--~~~aa~~~~~~~  244 (373)
T 3frk_A          168 GMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKY-HHIYKGFNSRLD--ELQAGFLRVKLK  244 (373)
T ss_dssp             TEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTT-BCCSCCCBCCCC--HHHHHHHHHHHH
T ss_pred             CEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCC-ccccccccCCCC--HHHHHHHHHHHH
Confidence            11222  4677666  7799543244566666655443321111111100001 111122221112  344444444557


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++++..++..++++++.+.|++++ +++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~  271 (373)
T 3frk_A          245 YLDKWNEERRKIAQKYIAGINNPN-VII  271 (373)
T ss_dssp             THHHHHHHHHHHHHHHHHHCCCTT-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc-eEe
Confidence            788889999999999999998875 544

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.87  E-value=4.4e-21  Score=191.01  Aligned_cols=238  Identities=16%  Similarity=0.115  Sum_probs=174.5

Q ss_pred             hHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          168 SVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      +..++++++.+++++++|  .++++    +  ++|+|||+|+.++++++.     ++|   ++|+++.++|.++...++.
T Consensus        68 ~~~~~~~~l~~~l~~~~g~~~~~~~----v--~~~~g~~~a~~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~~  133 (391)
T 4dq6_A           68 RPDSYNESIVNWLYRRHNWKIKSEW----L--IYSPGVIPAISLLINELT-----KAN---DKIMIQEPVYSPFNSVVKN  133 (391)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESCHHHHHHHHHHHHS-----CTT---CEEEECSSCCTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCcHHH----e--EEcCChHHHHHHHHHHhC-----CCC---CEEEEcCCCCHHHHHHHHH
Confidence            346788999999999999  55554    6  899999999999999875     366   8999999999999999999


Q ss_pred             cCcEEEEeeCC--C--CCccCHHHHHHhhccCcEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          246 FNIKLWRVPVD--K--EFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       246 ~Gi~v~~v~~~--~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      .|++++.+|++  +  ++.+|++++++++++ +++|++++|+||+|.+   +++++|+++|++||+++++|++|+++...
T Consensus       134 ~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~  212 (391)
T 4dq6_A          134 NNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILK  212 (391)
T ss_dssp             TTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT
T ss_pred             cCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccC
Confidence            99999999987  2  456999999999998 9999999999999999   66889999999999999999999875431


Q ss_pred             hhhhcCCCCCCCccCC---CCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchH
Q 013675          319 FAKKLGYPIPPFDFSV---QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLI  394 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~---~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~i  394 (438)
                           |...+++....   .+..++..++||++. .+.++|+++.+++++..........+.         .++-+....
T Consensus       213 -----g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~  278 (391)
T 4dq6_A          213 -----KHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID---------IKRNNCFSL  278 (391)
T ss_dssp             -----TCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT---------CCCCCHHHH
T ss_pred             -----CCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhc---------CCCCCHHHH
Confidence                 11011111111   123488889999953 445689888776454432211111110         001111122


Q ss_pred             HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          395 AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       395 a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      +++.+++.. +.+.+++..++..++++++.+.|++ +|++++
T Consensus       279 ~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  319 (391)
T 4dq6_A          279 VATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKV  319 (391)
T ss_dssp             HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             HHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEe
Confidence            344444443 4566788889999999999999987 788764

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.87  E-value=2.9e-21  Score=192.48  Aligned_cols=238  Identities=14%  Similarity=0.123  Sum_probs=176.5

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      .|...++..++++++.+++.+.+|.+  ++ +    +  ++|+|+|+|+.++++++.     .+|   ++|+++.+.|++
T Consensus        62 ~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~----v--~~~~g~~~a~~~~~~~~~-----~~g---d~vl~~~p~~~~  127 (386)
T 1u08_A           62 QYAPMTGVQALREAIAQKTERLYGYQPDADSD----I--TVTAGATEALYAAITALV-----RNG---DEVICFDPSYDS  127 (386)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTT----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEEESCCTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----E--EEcCChHHHHHHHHHHhC-----CCC---CEEEEeCCCchh
Confidence            34334567788999999998888864  44 4    6  899999999999999874     356   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      +...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||||.+.|   +++|+++|++||+++++|++|++
T Consensus       128 ~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~  207 (386)
T 1u08_A          128 YAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEH  207 (386)
T ss_dssp             HHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTT
T ss_pred             HHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            9999999999999999976 6889999999999989999999999999999976   68999999999999999999987


Q ss_pred             hhhhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcc--cccCCCccCCCCccCC
Q 013675          315 FVLPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGS  388 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gs  388 (438)
                      +...     |...+++ .+. ..+.|+++.++||+ ++++|  +|+++.++ ++.+......  ..|.            
T Consensus       208 ~~~~-----g~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~~-~~~~~l~~~~~~~~~~------------  268 (386)
T 1u08_A          208 INFS-----QQGHASVLAHPQLRERAVAVSSFGKT-YHMTGWKVGYCVAPA-PISAEIRKVHQYLTFS------------  268 (386)
T ss_dssp             CBCC-----SSCCCCGGGSHHHHTTEEEEEEHHHH-TTCGGGCCEEEECCH-HHHHHHHHHHHHHTSS------------
T ss_pred             cccC-----CCCCcChhcccCccCcEEEEecchhh-cCCcccceEEEEcCH-HHHHHHHHHHHhhccC------------
Confidence            5431     1101122 111 24679999999999 55555  89888764 3332211100  0111            


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+....+++.++++. +.+++++..++..++++++.+.|+++ +++
T Consensus       269 ~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  312 (386)
T 1u08_A          269 VNTPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNES-RLE  312 (386)
T ss_dssp             CCHHHHHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTSS-SCE
T ss_pred             CChHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            111112334444443 35678888899999999999999876 554

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.87  E-value=1.1e-20  Score=186.49  Aligned_cols=227  Identities=12%  Similarity=0.059  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++++|.++++    +  ++|+|||+++.++++++.     ++|   ++|+++.++|.++...++..|++++.
T Consensus        69 ~~~lr~~la~~~~~~~~~----v--~~~~g~t~a~~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~~~g~~~~~  134 (363)
T 3ffh_A           69 ASSLRKEVADFYQLEEEE----L--IFTAGVDELIELLTRVLL-----DTT---TNTVMATPTFVQYRQNALIEGAEVRE  134 (363)
T ss_dssp             CHHHHHHHHHHHTCCGGG----E--EEESSHHHHHHHHHHHHC-----STT---CEEEEEESSCHHHHHHHHHHTCEEEE
T ss_pred             hHHHHHHHHHHhCCChhh----E--EEeCCHHHHHHHHHHHHc-----cCC---CEEEEcCCChHHHHHHHHHcCCEEEE
Confidence            356777899999987765    6  899999999999999874     366   89999999999999999999999999


Q ss_pred             eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +|.++++.+|+++++++++++|++|++++|+||||.+.|++++.++++.+  |+++|+|++|+++..      +...+..
T Consensus       135 v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~------~~~~~~~  208 (363)
T 3ffh_A          135 IPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVT------PQPEKHE  208 (363)
T ss_dssp             EECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCS------SCCCCCG
T ss_pred             ecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcC------ccccCHH
Confidence            99998899999999999999999999999999999999999999999988  999999999986553      1000111


Q ss_pred             cc-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          331 DF-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       331 ~~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      .. ...+.+++..+++|+ +++.|  +|+++.+ +++..........|            +-+....+++.+++.  ..+
T Consensus       209 ~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~-~~~~~~l~~~~~~~------------~~~~~~~~~~~~~l~--~~~  272 (363)
T 3ffh_A          209 KLVRTYKNLIITRTFSKI-YGLASARVGYGIAD-KEIIRQLNIVRPPF------------NTTSIGQKLAIEAIK--DQA  272 (363)
T ss_dssp             GGGGTCTTEEEEEESSST-TCCSSCCCEEEEEC-HHHHHHHHHTCCSC------------CCBHHHHHHHHHHHH--CHH
T ss_pred             HHhhcCCCEEEEeechhh-hcCchhceeeeecC-HHHHHHHHHhCCCC------------CCCHHHHHHHHHHhc--CHH
Confidence            11 122345777888999 45445  4988874 44433221111111            111111223333343  236


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++++..++..++++++.+.|++++++++
T Consensus       273 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~  300 (363)
T 3ffh_A          273 FIGECRTSNANGIKQYEAFAKRFEKVKL  300 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence            6788889999999999999998767654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.87  E-value=1.4e-22  Score=202.27  Aligned_cols=230  Identities=14%  Similarity=0.031  Sum_probs=167.8

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDK  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~  241 (438)
                      ++.+.++.+++++.+++++|++++ +    +  +| |+|||+|+.+++..+.     ++|   +++++....|.+  +..
T Consensus        67 ~~~~~~~~~~ar~~la~ll~~~~~~e----v--if~t~~~T~a~n~ai~~l~-----~~g---d~v~~~~~~~~~~~~~~  132 (386)
T 3qm2_A           67 GKEFIQVAEEAEQDFRDLLNIPSNYK----V--LFCHGGGRGQFAGVPLNLL-----GDK---TTADYVDAGYWAASAIK  132 (386)
T ss_dssp             ------CCHHHHHHHHHHHTCCTTEE----E--EEEESCTTHHHHHHHHHHC-----TTC---CEEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCce----E--EEEcCCchHHHHHHHHhcc-----CCC---CeEEEEeCCHHHHHHHH
Confidence            456677888999999999999753 4    5  77 6999999999998874     256   777655554444  445


Q ss_pred             HHhhcCcEEEEeeCC--CCCc-cCHHHHHHhhccCcEEEEEecCCCCCccc-cCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          242 AAQYFNIKLWRVPVD--KEFR-ADVKAIKKYINRNTVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~--~~~~-~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-ddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      .++.+| +++.+|++  +++. +|+++++++++++|++|.+++.+|.+|++ .|+++|+     +|+++|||++++.+..
T Consensus       133 ~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~  206 (386)
T 3qm2_A          133 EAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSA  206 (386)
T ss_dssp             HHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSS
T ss_pred             HHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCC
Confidence            567779 99999998  5665 89999999999999999999999999995 9999986     7999999999653333


Q ss_pred             hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC--CCccCCCCccCCCCCchHH
Q 013675          318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS--GGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~--g~~~~~~~~~gsr~~~~ia  395 (438)
                                 ++|+...+  .+++++|||+ +|+|+|++++|++.+.+.. ...+.+.  +.........|+.+...++
T Consensus       207 -----------pidv~~~~--~~~~s~hK~l-GP~G~g~l~v~~~~~~~~~-~~~p~~~~~~~~~~~~~~~gTp~v~~i~  271 (386)
T 3qm2_A          207 -----------PLDVSRYG--VIYAGAQKNI-GPAGLTLVIVREDLLGKAH-ESCPSILDYTVLNDNDSMFNTPPTFAWY  271 (386)
T ss_dssp             -----------CCCGGGCS--EEEEETTTTT-CCTTEEEEEEEGGGCSCCC-TTSCGGGCHHHHHHC-------CCSHHH
T ss_pred             -----------CCCccccC--EEEEeccccc-CCCccEEEEECHHHHhhhc-ccCCcHHHHHHHhhcCCCCCCCcHHHHH
Confidence                       46776665  5679999996 7999999999876432211 1111110  0000111223555666788


Q ss_pred             HHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcC
Q 013675          396 GAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       396 ~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++.++++.+-.. |++++.++..+++++++++|+++
T Consensus       272 ~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~  307 (386)
T 3qm2_A          272 LSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS  307 (386)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999998888 89999999999999999999987

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.87  E-value=3.8e-21  Score=193.16  Aligned_cols=240  Identities=17%  Similarity=0.160  Sum_probs=175.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      |...++..++++++.+++.+.+|.+  +++    +  ++|+|||+|+.++++++.     ++|   ++|+++.++|+++.
T Consensus        74 y~~~~g~~~l~~~la~~l~~~~g~~~~~~~----v--~~t~g~~~al~~~~~~l~-----~~g---d~Vl~~~~~~~~~~  139 (406)
T 1xi9_A           74 YGDSEGLPELRKAIVEREKRKNGVDITPDD----V--RVTAAVTEALQLIFGALL-----DPG---DEILVPGPSYPPYT  139 (406)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCCCHHH----E--EEcCChHHHHHHHHHHhC-----CCC---CEEEEcCCCCccHH
Confidence            4334566788888888888887754  333    5  899999999999999874     366   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      .+++..|++++.+|+++  ++.+|+++|++++++++++|++++|+||+|.+.|   +++|+++|++||+++++|++|+++
T Consensus       140 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~  219 (406)
T 1xi9_A          140 GLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLM  219 (406)
T ss_dssp             HHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTC
T ss_pred             HHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccc
Confidence            99999999999999874  5679999999999999999999999999999866   899999999999999999999875


Q ss_pred             hhhhhhhcCCCCCCCccCCCCc-cEEEeCCCCCCCCCCC--cEEEEE-ecc----cccccchhcccccCCCccCCCCccC
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGV-TSISVDVHKYGLAPKG--TSVVLY-RNR----EIRKHQFVAVTEWSGGLYVSPTVAG  387 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gv-dsis~s~hK~~~~p~g--~g~l~~-r~~----~~~~~~~~~~~~~~g~~~~~~~~~g  387 (438)
                      ...     +...+...+. .+. |+++.++||+ ++++|  +|++++ .++    ++.+........ .          +
T Consensus       220 ~~~-----~~~~~~~~~~-~~~~~i~~~s~sK~-~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~-~----------~  281 (406)
T 1xi9_A          220 TYE-----GEHISPGSLT-KDVPVIVMNGLSKV-YFATGWRLGYMYFVDPENKLSEVREAIDRLARI-R----------L  281 (406)
T ss_dssp             BSS-----SCCCCHHHHC-SSSCEEEEEESTTT-TCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHH-T----------C
T ss_pred             ccC-----CCCCCHHHcC-CCceEEEEeccccc-cCCCccEEEEEEEecCchhHHHHHHHHHHHHHh-h----------c
Confidence            430     0000001111 456 8889999999 45555  898773 344    433221111000 0          1


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.+....+++.++++ .+.+++++..++..++++++.+.|+++|++++
T Consensus       282 ~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  328 (406)
T 1xi9_A          282 CPNTPAQFAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGIST  328 (406)
T ss_dssp             CSCSHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             CCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence            111112233334443 24456788889999999999999998887764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.87  E-value=2.4e-21  Score=194.15  Aligned_cols=237  Identities=14%  Similarity=0.087  Sum_probs=176.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCC---CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKE---KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~---~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      .++..++.+++.+++++++|.+.   ++    +  ++|+|||+|+..+++++.     .+|   ++|+++.+.|.++..+
T Consensus        77 ~~g~~~l~~~l~~~l~~~~g~~~~~~~~----i--~~~~g~~~a~~~~~~~l~-----~~g---d~vl~~~~~~~~~~~~  142 (407)
T 3nra_A           77 YRGDLGIRDLLAPRLAAFTGAPVDARDG----L--IITPGTQGALFLAVAATV-----ARG---DKVAIVQPDYFANRKL  142 (407)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTSCCCTTTS----E--EEESHHHHHHHHHHHTTC-----CTT---CEEEEEESCCTHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCc----E--EEeCCcHHHHHHHHHHhC-----CCC---CEEEEcCCcccchHHH
Confidence            44567888899999999999852   33    5  899999999999998875     366   8999999999999999


Q ss_pred             HhhcCcEEEEeeC------CCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          243 AQYFNIKLWRVPV------DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       243 ~~~~Gi~v~~v~~------~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      ++..|.+++.+|+      +.++.+|+++|++++++++++|++++|+||||.+.|   +++|+++|++||+++++|++|+
T Consensus       143 ~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~  222 (407)
T 3nra_A          143 VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS  222 (407)
T ss_dssp             HHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             HHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            9999999999998      367889999999999999999999999999999988   9999999999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCcc---CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          314 GFVLPFAKKLGYPIPPFDF---SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~---~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      ++...     |...+.+..   ...+.+++..+++|.+. .+.++|+++.+ +++..........+..+           
T Consensus       223 ~~~~~-----g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~-----------  285 (407)
T 3nra_A          223 RLRYA-----GASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAIIARMEKLQAIVSLR-----------  285 (407)
T ss_dssp             TSBCT-----TCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEEC-HHHHHHHHHHHHHHTSS-----------
T ss_pred             ccccC-----CCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcC-HHHHHHHHHHHhhhccC-----------
Confidence            76531     110111211   12446788999999953 33557887764 44332211111111100           


Q ss_pred             CCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          390 PGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       390 ~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..  ..++.++...+  +.+.+++..++..++++++.+.|+++|++++
T Consensus       286 ~~--~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  331 (407)
T 3nra_A          286 AA--GYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFA  331 (407)
T ss_dssp             SC--HHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBC
T ss_pred             CC--hHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence            00  11333333333  3356788888899999999999999888765

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.87  E-value=2e-21  Score=196.26  Aligned_cols=237  Identities=18%  Similarity=0.159  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675          170 ARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      .++++++++++++.+|+  ++++    +  ++|+|+++|+..+++++.     ++|   ++|+++.+.|.++..++...|
T Consensus        99 ~~l~~~l~~~l~~~~g~~~~~~~----v--~~~~g~~ea~~~a~~~~~-----~~g---d~Vi~~~~~y~~~~~~~~~~g  164 (421)
T 3l8a_A           99 DDLYQAVIDWERKEHDYAVVKED----I--LFIDGVVPAISIALQAFS-----EKG---DAVLINSPVYYPFARTIRLND  164 (421)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGG----E--EEESCHHHHHHHHHHHHS-----CTE---EEEEEEESCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHH----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEECCCCcHHHHHHHHHCC
Confidence            67888999999999994  4443    6  899999999999999975     356   899999999999999999999


Q ss_pred             cEEEEeeCC-C--CCccCHHHHHHhhc-cCcEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          248 IKLWRVPVD-K--EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       248 i~v~~v~~~-~--~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      .+++.+|++ +  ++.+|+++|+++++ ++|++|++++|+||+|.+   +++++|+++|++||+++++|++|+++...  
T Consensus       165 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~--  242 (421)
T 3l8a_A          165 HRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALF--  242 (421)
T ss_dssp             EEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--
T ss_pred             CEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccC--
Confidence            999999986 2  45799999999998 789999999999999999   67999999999999999999999876541  


Q ss_pred             hhcCCC-CC--CCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675          321 KKLGYP-IP--PFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       321 ~~~g~~-~p--~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                         |.. .+  .++....+.+++..+++|++. ++.++|+++.+++++..........+.         .++-+....++
T Consensus       243 ---g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~---------~~~~n~~~~~a  310 (421)
T 3l8a_A          243 ---GNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANN---------QHEVPTVGMIA  310 (421)
T ss_dssp             ---TCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT---------CSCCCHHHHHH
T ss_pred             ---CCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcc---------cCCCCHHHHHH
Confidence               110 11  111122356788899999953 445679988876655432211110110         00111112334


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.+++. .+.+.+++..++..++++++.+.|+++|++++
T Consensus       311 ~~aal~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~  348 (421)
T 3l8a_A          311 TQAAFQ-YGKPWLEELKTVIEGNIKLVIKELEAKTKIKV  348 (421)
T ss_dssp             HHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence            455554 35677888999999999999999988777654

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.87  E-value=1.2e-20  Score=186.97  Aligned_cols=234  Identities=15%  Similarity=0.133  Sum_probs=170.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      +...++..++++++.+++.+.+|.+  +++    +  ++|+|||+|+.++++++.     ++|   ++|+++.++|+++.
T Consensus        62 y~~~~~~~~l~~~la~~~~~~~g~~~~~~~----v--~~~~g~~~a~~~~~~~~~-----~~g---d~vl~~~p~~~~~~  127 (370)
T 2z61_A           62 YTDSRGILELREKISELYKDKYKADIIPDN----I--IITGGSSLGLFFALSSII-----DDG---DEVLIQNPCYPCYK  127 (370)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHSSCCCCGGG----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEESSCCTHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCChhh----E--EECCChHHHHHHHHHHhc-----CCC---CEEEEeCCCchhHH
Confidence            4334556788888888888877754  343    5  899999999999999875     366   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      ..++..|++++.+|      +|+++|++++++++++|++++|+||+|.+.|.+ |.++|++||+++++|++|+.+...  
T Consensus       128 ~~~~~~g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~--  198 (370)
T 2z61_A          128 NFIRFLGAKPVFCD------FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYE--  198 (370)
T ss_dssp             HHHHHTTCEEEEEC------SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSS--
T ss_pred             HHHHHcCCEEEEeC------CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccC--
Confidence            99999999999988      689999999998999999999999999999999 999999999999999999876531  


Q ss_pred             hhcCCCCCCCcc-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          321 KKLGYPIPPFDF-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       321 ~~~g~~~p~~~~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                         |...+..++ ...+.|++..++||+ ++++|  +|+++.++ ++.+........+..          +-+....+++
T Consensus       199 ---g~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~a~  263 (370)
T 2z61_A          199 ---GKCYSAIEFDENLEKTILINGFSKL-YAMTGWRIGYVISND-EIIEAILKLQQNLFI----------SAPTISQYAA  263 (370)
T ss_dssp             ---SCCCCGGGTCTTCSSEEEEEESTTT-TTCGGGCCEEEECCH-HHHHHHHHHHHHHTS----------SSCHHHHHHH
T ss_pred             ---CCCcCHHHccCCCCcEEEEecChhc-cCCccceEEEEEECH-HHHHHHHHHHhhccc----------CCCHHHHHHH
Confidence               110111122 134679999999999 46555  89887765 433221111111110          1111112222


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .++++.++.+.+++..++..++++++.+.|+++ |+++
T Consensus       264 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  300 (370)
T 2z61_A          264 LKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEV  300 (370)
T ss_dssp             GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence            233332245677888889999999999999886 5543

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.86  E-value=5.2e-21  Score=192.45  Aligned_cols=239  Identities=17%  Similarity=0.145  Sum_probs=176.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCC--CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~--~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      |...++..++++++.+++.+.+|.+  ++ +    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|+++
T Consensus        58 y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~----v--~~t~g~~~al~~~~~~~~-----~~g---d~Vl~~~~~y~~~  123 (411)
T 2o0r_A           58 YPPGPGSAPLRRAIAAQRRRHFGVDYDPETE----V--LVTVGATEAIAAAVLGLV-----EPG---SEVLLIEPFYDSY  123 (411)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTS----E--EEEEHHHHHHHHHHHHHC-----CTT---CEEEEEESCCTTH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCCCCCCce----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEeCCCcHhH
Confidence            4334556788999999999888864  43 4    6  899999999999999875     367   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          240 DKAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      ..+++..|++++.+|+++   ++.+|+++|++++++++++|++++|+||+|.+.|   +++|+++|++||+++++|++|+
T Consensus       124 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~  203 (411)
T 2o0r_A          124 SPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYE  203 (411)
T ss_dssp             HHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            999999999999999875   3679999999999989999999999999999976   5899999999999999999998


Q ss_pred             chhhhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          314 GFVLPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      ++...     |...+++ .+. ..+.|+++.++||+ ++++|  +|+++.+ +++.+..........          .+.
T Consensus       204 ~~~~~-----g~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~----------~~~  266 (411)
T 2o0r_A          204 HLVFD-----HARHLPLAGFDGMAERTITISSAAKM-FNCTGWKIGWACGP-AELIAGVRAAKQYLS----------YVG  266 (411)
T ss_dssp             TCBCT-----TCCCCCGGGSTTTGGGEEEEEEHHHH-TTCTTTCEEEEECC-HHHHHHHHHHHHHHT----------SCC
T ss_pred             ccccC-----CCCCcChhhccCCCCCEEEEeechhh-cCCccceEEEEeeC-HHHHHHHHHHHhhcc----------CCC
Confidence            76531     1101112 111 24679999999998 56666  8998775 444332111100000          011


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +....+++.++++. +.+++++..++..++++++.+.|++. +++
T Consensus       267 ~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  309 (411)
T 2o0r_A          267 GAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFA  309 (411)
T ss_dssp             CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred             ChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCE
Confidence            11223345555543 46778888899999999999999875 444

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.86  E-value=6.5e-21  Score=189.60  Aligned_cols=226  Identities=21%  Similarity=0.211  Sum_probs=167.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.++++++.++++    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|.++..+++..|++++.+|
T Consensus        65 ~l~~~la~~~~~~~~~----v--~~~~g~~~a~~~~~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~v~  130 (381)
T 1v2d_A           65 ALREALAEEFAVEPES----V--VVTSGATEALYVLLQSLV-----GPG---DEVVVLEPFFDVYLPDAFLAGAKARLVR  130 (381)
T ss_dssp             HHHHHHHHHHTSCGGG----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEEESCCTTHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHhcCCChhh----E--EEcCChHHHHHHHHHHhC-----CCC---CEEEEcCCCchhHHHHHHHcCCEEEEEe
Confidence            4555677889987665    5  999999999999999875     366   8999999999999999999999999999


Q ss_pred             CC---CCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          255 VD---KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       255 ~~---~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      ++   +++.+|+++|++++++++++|++++|+||||.+.|   +++|+++|++||+++|+|++|+++..      |...+
T Consensus       131 ~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~------g~~~~  204 (381)
T 1v2d_A          131 LDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY------GERPR  204 (381)
T ss_dssp             CEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS------SSCCC
T ss_pred             CCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc------CCCCC
Confidence            97   56889999999999989999999999999999976   89999999999999999999986642      11000


Q ss_pred             CC-ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          329 PF-DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       329 ~~-~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                      .+ .. ..++|+++.++||+ ++++|  +|+++.++ ++.+....... +.         ..+.+....+++.+++....
T Consensus       205 ~~~~~-~~~~~~~~~s~sK~-~~~~G~r~G~~~~~~-~~~~~~~~~~~-~~---------~~~~~~~~~~a~~~~l~~~~  271 (381)
T 1v2d_A          205 RLREF-APERTFTVGSAGKR-LEATGYRVGWIVGPK-EFMPRLAGMRQ-WT---------SFSAPTPLQAGVAEALKLAR  271 (381)
T ss_dssp             CHHHH-CTTTEEEEEEHHHH-TTCGGGCCEEEECCT-TTHHHHHHHHH-HH---------TSSCCHHHHHHHHHHHHHHH
T ss_pred             CHHHh-cCCCEEEEeechhh-cCCcccceEEEEeCH-HHHHHHHHHHh-hc---------ccCCCcHHHHHHHHHHhCcc
Confidence            11 11 45789999999998 45555  89987754 33322111000 00         00111112233444444221


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          406 -QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       406 -~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                       .+++++..++..++++++.+.|++. +++
T Consensus       272 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  300 (381)
T 1v2d_A          272 REGFYEALREGYRRRRDLLAGGLRAM-GLR  300 (381)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence             4567888899999999999999884 554

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.86  E-value=1.3e-20  Score=188.48  Aligned_cols=237  Identities=16%  Similarity=0.103  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          169 VARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      ..++++.+.+++.+.+|  .++++    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|.++..+++..
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~----v--~~t~g~~~a~~~~~~~l~-----~~g---d~vl~~~p~~~~~~~~~~~~  133 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTDW----I--INTAGVVPAVFNAVREFT-----KPG---DGVIIITPVYYPFFMAIKNQ  133 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGG----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEECSSCCTHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhh----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEEcCCCcHhHHHHHHHc
Confidence            56788888888888888  44444    6  899999999999999875     256   89999999999999999999


Q ss_pred             CcEEEEeeCC-CC--CccCHHHHHHhhc-cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          247 NIKLWRVPVD-KE--FRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       247 Gi~v~~v~~~-~~--~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      |++++.+|++ ++  +.+|+++|+++++ +++++|++++|+||||.+.|   +++|+++|++||+++++|++|+++... 
T Consensus       134 g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-  212 (399)
T 1c7n_A          134 ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP-  212 (399)
T ss_dssp             TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT-
T ss_pred             CCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC-
Confidence            9999999986 33  4699999999998 68999999999999999988   999999999999999999999876531 


Q ss_pred             hhhcCCCCCCCccCC---CCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchH
Q 013675          320 AKKLGYPIPPFDFSV---QGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLI  394 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~---~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~i  394 (438)
                          |...+++....   .+.+++..+++|++ +++  .+|+++.+++++..........|.         .++.+....
T Consensus       213 ----g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~  278 (399)
T 1c7n_A          213 ----GYEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNPDIRERFTKSRDATS---------GMPFTTLGY  278 (399)
T ss_dssp             ----TCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCHHHHHHHHHHHHHTT---------CCCCCHHHH
T ss_pred             ----CCCcccHHHcCccccCcEEEEEeChhhc-cccchheEEEEECCHHHHHHHHHHHhhcc---------cCCCCHHHH
Confidence                11011121111   24568888999994 433  479988876544432211111111         001111112


Q ss_pred             HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          395 AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       395 a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      +++.+++. .+.+.+++..++..++++++.+.|++ +|++++
T Consensus       279 ~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  319 (399)
T 1c7n_A          279 KACEICYK-ECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA  319 (399)
T ss_dssp             HHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC
T ss_pred             HHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeE
Confidence            23333443 24567888888999999999999998 888764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.86  E-value=3e-21  Score=189.60  Aligned_cols=231  Identities=16%  Similarity=0.191  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH--Hhhc-
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--AQYF-  246 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a--~~~~-  246 (438)
                      .....++++++++++| ++.+    +  ++|+|||+|+.+++++++.     +|   ++|+++.+.|++...+  +... 
T Consensus        42 ~~~~~~l~~~la~~~g-~~~~----v--~~~~~gt~a~~~al~~~~~-----~g---d~vi~~~~~~~~~~~~~~~~~~~  106 (356)
T 1v72_A           42 DELTAQVKRKFCEIFE-RDVE----V--FLVPTGTAANALCLSAMTP-----PW---GNIYCHPASHINNDECGAPEFFS  106 (356)
T ss_dssp             SHHHHHHHHHHHHHHT-SCCE----E--EEESCHHHHHHHHHHTSCC-----TT---EEEEECTTSHHHHSSTTHHHHHT
T ss_pred             chHHHHHHHHHHHHhC-CCCc----E--EEeCCccHHHHHHHHHhcC-----CC---CEEEEcCccchhhhhchHHHHHh
Confidence            3566788889999999 4332    4  8999999999999998753     56   8999999999988766  7777 


Q ss_pred             -CcEEEEeeCCCCCccCHHHHHH-hhcc-------CcEEEEEecCCCCCcc---ccCHHHHHHHHHHcCCeEEEeccccc
Q 013675          247 -NIKLWRVPVDKEFRADVKAIKK-YINR-------NTVLIVGSAPGFPHGI---IDPIQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       247 -Gi~v~~v~~~~~~~~d~~~Le~-~I~~-------~t~~vv~~~~~~~tG~---iddi~~I~~la~~~~i~lhVD~a~gg  314 (438)
                       |++++.+|.+ ++.+|+++|++ ++++       +|++|++++|++ +|.   .+++++|+++|++||+++|+|++|+.
T Consensus       107 ~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~  184 (356)
T 1v72_A          107 NGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFA  184 (356)
T ss_dssp             TSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred             CCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhH
Confidence             9999999986 57899999999 9986       689999999876 999   56689999999999999999999976


Q ss_pred             hhhhhhhhcCCCCCCCccC-CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          315 FVLPFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~-~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      +...+   .+.  ++.... ..++|++++++||+ ++|.|+|+++. ++++......... ..+          .-....
T Consensus       185 ~~~~~---~~~--~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~-~~~~~~~~~~~~~-~~~----------~~~~~~  246 (356)
T 1v72_A          185 NALVS---LGC--SPAEMTWKAGVDALSFGATKN-GVLAAEAIVLF-NTSLATEMSYRRK-RAG----------HLSSKM  246 (356)
T ss_dssp             HHHHH---HTC--CTTTTTGGGTCCEEEECCGGG-TCSSCEEEEES-SGGGHHHHHHHHH-HTT----------CCCSST
T ss_pred             hHhcc---CCC--CHHHhhhhhcCCEEEEecccC-CCcCccEEEEE-CHHHHhhHHHHhh-ccC----------chhhhH
Confidence            54321   121  111111 13678999999999 56888888766 4444332111100 011          001111


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++..++..+..+.+.+..++..++++++.+.|++++|+++
T Consensus       247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  288 (356)
T 1v72_A          247 RFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV  288 (356)
T ss_dssp             HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence            223344455555455677788889999999999998888765

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.86  E-value=8.4e-21  Score=190.25  Aligned_cols=214  Identities=18%  Similarity=0.172  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhcC
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~G  247 (438)
                      ...++++.+++++|.+.      +  ++++|||+|+.++++++.     ++|   ++|+++.+.|.+....+    ...|
T Consensus        67 ~~~~l~~~la~~~g~~~------~--~~~~sGt~A~~~al~~~~-----~~g---d~Vi~~~~~y~~~~~~~~~~~~~~g  130 (392)
T 3qhx_A           67 TRTALEAALAAVEDAAF------G--RAFSSGMAAADCALRAML-----RPG---DHVVIPDDAYGGTFRLIDKVFTGWN  130 (392)
T ss_dssp             HHHHHHHHHHHHTTCSE------E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHHHTGGGGT
T ss_pred             HHHHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEeCCCcchHHHHHHHHHHhcC
Confidence            34566678999998862      3  889999999999999874     366   89999999998876665    6679


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      ++++.+|++     |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++|+|++|+.+..          
T Consensus       131 ~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~----------  195 (392)
T 3qhx_A          131 VEYTPVALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL----------  195 (392)
T ss_dssp             CEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT----------
T ss_pred             cEEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc----------
Confidence            999999876     89999999999999999999999999999999999999999999999999874421          


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCC---cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL  404 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g---~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~  404 (438)
                        .+....++|+++.|+||++ ++.|   .|+++.+++++..........           .|.....  ..+|++++.+
T Consensus       196 --~~~~~~~~di~~~S~sK~l-g~~g~~~~G~v~~~~~~~~~~l~~~~~~-----------~g~~~~~--~~~~~~~~~l  259 (392)
T 3qhx_A          196 --QQPLSLGADVVLHSTTKYI-GGHSDVVGGALVTNDEELDQSFAFLQNG-----------AGAVPGP--FDAYLTMRGL  259 (392)
T ss_dssp             --CCGGGGTCSEEEEETTTTT-TCSSCCCCEEEEESCHHHHHHHHHHHHH-----------HCCCCCH--HHHHHHHHHH
T ss_pred             --CChHHhCCcEEEEcCcccc-CCCCCceEEEEEECcHHHHHHHHHHHHh-----------cCCCCCH--HHHHHHHhhh
Confidence              1122347899999999995 5544   788777755543321111100           1122222  2566666433


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          405 GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       405 g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                        +.+....++..++++++.+.|++.|.+.
T Consensus       260 --~~l~~~~~~~~~~~~~l~~~L~~~~~v~  287 (392)
T 3qhx_A          260 --KTLVLRMQRHSENAAAVAEFLAEHPAIS  287 (392)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence              4456777888899999999999887764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.86  E-value=1.3e-20  Score=187.88  Aligned_cols=231  Identities=19%  Similarity=0.142  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.+ ..       +++++||+|+.+++++++.    ++|   ++|+++.++|+++..+++..|++++.+
T Consensus        41 ~~l~~~la~~~~~~-~~-------i~~~sGt~al~~~l~~l~~----~~g---d~Vi~~~~~~~~~~~~~~~~g~~~~~v  105 (388)
T 1b9h_A           41 NSFEREFAAHHGAA-HA-------LAVTNGTHALELALQVMGV----GPG---TEVIVPAFTFISSSQAAQRLGAVTVPV  105 (388)
T ss_dssp             HHHHHHHHHHTTCS-EE-------EEESCHHHHHHHHHHHTTC----CTT---CEEEEESSSCTHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhCCC-eE-------EEeCCHHHHHHHHHHHcCC----CCc---CEEEECCCccHHHHHHHHHcCCEEEEE
Confidence            34555688888886 32       4555569999999998721    356   899999999999999999999999999


Q ss_pred             eCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          254 PVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       254 ~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      |+++ ++.+|+++|+++|+++|++|+   |+|++|.+.|+++|.++|++||+++|+|++++.+..+    .|     .++
T Consensus       106 ~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~----~~-----~~~  173 (388)
T 1b9h_A          106 DVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARW----QG-----KRV  173 (388)
T ss_dssp             CBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE----TT-----EEG
T ss_pred             ecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCcc----CC-----eec
Confidence            9987 589999999999998898877   8889999999999999999999999999999754331    01     112


Q ss_pred             CCCC-ccEEEeCCCCCCCCCCCcEEEEEecccc--cccchhccc-ccCC--CccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          333 SVQG-VTSISVDVHKYGLAPKGTSVVLYRNREI--RKHQFVAVT-EWSG--GLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       333 ~~~g-vdsis~s~hK~~~~p~g~g~l~~r~~~~--~~~~~~~~~-~~~g--~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                      ...+ +++.+++.||++.++ ..|+++.+++.+  ......... .+..  ..+. ....|+........+++.+.  ..
T Consensus       174 ~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~a~~~~--~~  249 (388)
T 1b9h_A          174 GELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYF-HKIAGSNMRLNEFSASVLRA--QL  249 (388)
T ss_dssp             GGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCC-CCSCCCBCBCBHHHHHHHHH--HH
T ss_pred             ccccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHhCCCCccCccce-eecccccCCcCHHHHHHHHH--HH
Confidence            2223 788889999996555 468877776544  222111110 0000  0000 00112211111112333222  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.+++..++..++++++.+.|+++|++++
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~  278 (388)
T 1b9h_A          250 ARLDEQIAVRDERWTLLSRLLGAIDGVVP  278 (388)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCccc
Confidence            45677888888999999999999888764

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.86  E-value=5.1e-21  Score=189.67  Aligned_cols=229  Identities=15%  Similarity=0.031  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.+  .    +  ++|+|||+|+.+++++++.    ++|   ++|+++.++|+++..+++..|++++.+
T Consensus        41 ~~l~~~la~~~~~~--~----~--~~~~~gt~a~~~~~~~~~~----~~g---d~v~~~~~~~~~~~~~~~~~g~~~~~~  105 (374)
T 3uwc_A           41 EKFEKRFAALHNAP--H----A--IGVGTGTDALAMSFKMLNI----GAG---DEVITCANTFIASVGAIVQAGATPVLV  105 (374)
T ss_dssp             HHHHHHHHHHTTCS--E----E--EEESCHHHHHHHHHHHTTC----CTT---CEEEEESSSCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhCCC--c----E--EEeCCHHHHHHHHHHHcCC----CCC---CEEEECCCccHHHHHHHHHcCCEEEEE
Confidence            34555788888876  2    3  8999999999999988721    356   899999999999999999999999999


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccC
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS  333 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~  333 (438)
                      |+++++.+|++++++++++++++|+   ++||+|.+.|+++|.++|+++|+++|+|++|+.+.. +           +..
T Consensus       106 ~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~-~-----------~~~  170 (374)
T 3uwc_A          106 DSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGR-I-----------NDK  170 (374)
T ss_dssp             CBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-E-----------TTE
T ss_pred             ecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCce-e-----------CCe
Confidence            9988899999999999999998887   788999999999999999999999999999875432 1           111


Q ss_pred             CCC--ccEEEeCCC--CCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHH
Q 013675          334 VQG--VTSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGY  409 (438)
Q Consensus       334 ~~g--vdsis~s~h--K~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~  409 (438)
                      ..+  .|+++.++|  |++.++...|+++.+++++.+.............+. ....|.....  .++.+++.....+++
T Consensus       171 ~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~aa~~~~~~~~~  247 (374)
T 3uwc_A          171 FVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRDV-CVEYGINCRM--DTIQAVIANRLMNQL  247 (374)
T ss_dssp             ETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTE-ESSCCCBCBC--CHHHHHHHHHHGGGH
T ss_pred             eccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccccCc-cccccccCCC--CHHHHHHHHHHHHHH
Confidence            112  489999977  995442346776666655433211111100000000 0001111111  133444444445677


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCC-ccc
Q 013675          410 LENTKAIMEVSESIQKGLVLFPM-FLP  435 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~~~~g-~~~  435 (438)
                      ++..++..++++++.+.|+++++ +++
T Consensus       248 ~~~~~~~~~~~~~l~~~l~~~~~~~~~  274 (374)
T 3uwc_A          248 ETITEKRRGIAHLYDQSFVDLSEFIDV  274 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGTTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCeEEe
Confidence            88889999999999999999877 654

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.86  E-value=1.5e-20  Score=189.12  Aligned_cols=238  Identities=21%  Similarity=0.180  Sum_probs=174.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      .+...++..++++++.+++.+.+|.+  +++    +  ++|+|||+|+.++++++.     ++|   ++|+++.++|+++
T Consensus        74 ~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~----v--~~~~g~t~a~~~~~~~~~-----~~g---d~Vl~~~~~~~~~  139 (409)
T 2gb3_A           74 YYSHSAGIWELREAFASYYKRRQRVDVKPEN----V--LVTNGGSEAILFSFAVIA-----NPG---DEILVLEPFYANY  139 (409)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHTSCCCCCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCTHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhCCCCCHHH----E--EEeCCHHHHHHHHHHHhC-----CCC---CEEEEcCCCchhH
Confidence            34444566788888888888877754  333    5  899999999999999874     366   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCcccc---CHHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id---di~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ..+++..|++++.+|+++  ++.+ +++|++++++++++|++++|+||+|.+.   ++++|+++|+++|+++++|++|++
T Consensus       140 ~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~  218 (409)
T 2gb3_A          140 NAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSE  218 (409)
T ss_dssp             HHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             HHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccc
Confidence            999999999999999985  4555 8999999998999999999999999985   489999999999999999999987


Q ss_pred             hhhhhhhhcCCCCCCCccC-CCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          315 FVLPFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~-~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      +...     +... ++ +. ..+.|+++.++||++ ++.|  +|+++.+++++.+........|.           +.+.
T Consensus       219 ~~~~-----~~~~-~~-~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~l~~~l~~~~~~~~-----------~~~~  279 (409)
T 2gb3_A          219 IVFR-----GEFA-SA-LSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAMKLAQGRL-----------APPL  279 (409)
T ss_dssp             CBCS-----SCCC-CG-GGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHHHHHHHSC-----------CCCH
T ss_pred             cccC-----CCCC-Cc-cccCCCCEEEEecchhcc-CCccceEEEEEECcHHHHHHHHHHHhccC-----------CCCH
Confidence            6531     1001 11 11 246799999999994 5555  89988776344332111111110           0111


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ...+++.++++. +.+++++..++..++++++.+.|+++ ++++
T Consensus       280 ~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  321 (409)
T 2gb3_A          280 LEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEH-GLKR  321 (409)
T ss_dssp             HHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred             HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHc-Ccee
Confidence            112233333322 56778888999999999999999887 6554

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.86  E-value=4.5e-20  Score=182.27  Aligned_cols=220  Identities=18%  Similarity=0.199  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.++++    +  ++|+|+++++.++++++..     +|  +++|+++.++|.++..+++..|.+++.+
T Consensus        61 ~~lr~~la~~~~~~~~~----v--~~~~G~~~ai~~~~~~~~~-----~g--~d~Vl~~~p~~~~~~~~~~~~g~~~~~v  127 (356)
T 1fg7_A           61 KAVIENYAQYAGVKPEQ----V--LVSRGADEGIELLIRAFCE-----PG--KDAILYCPPTYGMYSVSAETIGVECRTV  127 (356)
T ss_dssp             HHHHHHHHHHHTSCGGG----E--EEESHHHHHHHHHHHHHCC-----TT--TCEEEECSSSCTHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHHHHhCCChHH----E--EEcCCHHHHHHHHHHHHhC-----CC--CCEEEEeCCChHHHHHHHHHcCCEEEEe
Confidence            35666788888987765    6  8999999999999998752     33  2689999999999999999999999999


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHH---HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQEL---GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I---~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      |+++++.+|+++++++++ +|++|++++|+||||.+.|.+++   +++|+ +|+++++|++|+++...        .+..
T Consensus       128 ~~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~--------~~~~  197 (356)
T 1fg7_A          128 PTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ--------ASLA  197 (356)
T ss_dssp             CCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG--------GCSG
T ss_pred             eCCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC--------CcHH
Confidence            998888899999999998 89999999999999999886555   45555 89999999999876510        0011


Q ss_pred             cc-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          331 DF-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       331 ~~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      +. ...+.+++..+++|+ +++.|  +|+++.+ +++.+........|               +....++.++...+...
T Consensus       198 ~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~-~~~~~~l~~~~~~~---------------~~~~~~~~a~~~~l~~~  260 (356)
T 1fg7_A          198 GWLAEYPHLAILRTLSKA-FALAGLRCGFTLAN-EEVINLLMKVIAPY---------------PLSTPVADIAAQALSPQ  260 (356)
T ss_dssp             GGTTTCTTEEEEEESSST-TCCGGGCCEEEEEC-HHHHHHHHHHSCSS---------------CSCHHHHHHHHHHTSHH
T ss_pred             HHHhhCCCEEEEecchHh-hcCchhhhEEEEeC-HHHHHHHHHhcCCC---------------CCCHHHHHHHHHHhcCc
Confidence            21 223567888999998 45444  7988874 44433221111111               01123455555556554


Q ss_pred             H---HHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          408 G---YLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       408 g---~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      +   +++..++..++++++.+.|++++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  289 (356)
T 1fg7_A          261 GIVAMRERVAQIIAEREYLIAALKEIPCV  289 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            4   6778888899999999999988653

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.86  E-value=1e-20  Score=186.91  Aligned_cols=231  Identities=15%  Similarity=0.109  Sum_probs=165.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a  242 (438)
                      .+...++.+++++.+++++|.+++ +     +-++|+|||+++.+++.++.     .+|   |+|+++.+.|++  +...
T Consensus        44 ~~~~~~~~~~~~~~la~~~g~~~~~~-----~i~~t~g~t~a~~~~~~~l~-----~~g---d~vl~~~~~~~~~~~~~~  110 (362)
T 2c0r_A           44 GAVYEAVHNEAQARLLALLGNPTGYK-----VLFIQGGASTQFAMIPMNFL-----KEG---QTANYVMTGSWASKALKE  110 (362)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCSSEE-----EEEESSHHHHHHHHHHHHHC-----CTT---CEEEEEECSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCcE-----EEEECCCchHHHHHHHHhcC-----CCC---CeEEEEecCcHhHHHHHH
Confidence            566677888999999999999764 3     22678999999999999875     267   899888776655  3467


Q ss_pred             HhhcCcEEEEeeCCC--CC--ccCHHHHHHhhccCcEEEEEecCCCCCccc-cCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          243 AQYFNIKLWRVPVDK--EF--RADVKAIKKYINRNTVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~--~~--~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-ddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ++.+| +++.+|+++  ++  .+|.++++  ++++|++|++++++||||.+ .|+++|      +|+++|+|++|+.+..
T Consensus       111 ~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~  181 (362)
T 2c0r_A          111 AKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSR  181 (362)
T ss_dssp             HHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSS
T ss_pred             HHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCC
Confidence            77889 999999872  23  35766654  78899999999999999995 888887      8999999999864432


Q ss_pred             hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC-Ccc-CCCCccCCCCCchHH
Q 013675          318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG-GLY-VSPTVAGSRPGGLIA  395 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g-~~~-~~~~~~gsr~~~~ia  395 (438)
                                 +++...  .|+++.++||++ +|.|+|+++.+++.. +......+.+.. +.. ......++.+...++
T Consensus       182 -----------~~~~~~--~d~~~~s~~K~~-g~~G~G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  246 (362)
T 2c0r_A          182 -----------PFDLNQ--FGLVYAGAQKNL-GPSGVTVVIVREDLV-AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIY  246 (362)
T ss_dssp             -----------CCCGGG--CSEEEEETTTTT-CCSSCEEEEEEGGGS-SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred             -----------ccchhH--CcEEEEeccccc-cCcCcEEEEEcHHHH-hhccccCchHHhHHHHhhccCcCCCchHHHHH
Confidence                       233322  389999999995 799999988875432 211100000000 000 001112344444466


Q ss_pred             HHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          396 GAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       396 ~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      ++.++++.+... +++++.++..++++++.+.|++++++
T Consensus       247 a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  285 (362)
T 2c0r_A          247 MVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGF  285 (362)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            777888766554 78999999999999999999988644

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.86  E-value=2.7e-21  Score=207.01  Aligned_cols=243  Identities=12%  Similarity=0.025  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH-HhhcCcEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-AQYFNIKLW  251 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a-~~~~Gi~v~  251 (438)
                      ..++++.+++++|.+..     +  ++++|+|+|+..++.++.     ++|   |+|+++.+.|.++..+ +...|++++
T Consensus       175 i~e~e~~lA~~~gae~~-----i--~v~nGtt~an~~ai~al~-----~pG---D~VLv~~~~H~S~~~~~~~l~Ga~~v  239 (730)
T 1c4k_A          175 AVAAEKHAARVYNADKT-----Y--FVLGGSSNANNTVTSALV-----SNG---DLVLFDRNNHKSVYNSALAMAGGRPV  239 (730)
T ss_dssp             HHHHHHHHHHHTTCSEE-----E--EESSHHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred             HHHHHHHHHHHHCCCcE-----E--EECCHHHHHHHHHHHHhc-----CCC---CEEEEcCCchHHHHHHHHHHCCCEEE
Confidence            45677789999999753     3  788888899999999876     377   8999999999999988 888899999


Q ss_pred             EeeCCCC-----CccCHHHH-----HHhhccC------c----EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675          252 RVPVDKE-----FRADVKAI-----KKYINRN------T----VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       252 ~v~~~~~-----~~~d~~~L-----e~~I~~~------t----~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a  311 (438)
                      .++.+.+     +.+|+++|     +++|+++      +    +++++++|| ++|.+.|+++|+++|+++|+++|+|+|
T Consensus       240 ~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn-~~G~v~dl~~I~~la~~~g~~livDeA  318 (730)
T 1c4k_A          240 YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIYNAHEVVKRIGHLCDYIEFDSA  318 (730)
T ss_dssp             EECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TTSEEECHHHHHHHHGGGBSEEEEECT
T ss_pred             EEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC-CCCeecCHHHHHHHHHHcCCeEEEEcc
Confidence            9887532     45799999     9999876      5    889999985 799999999999999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCcc----EEEeCCCCCCCCCCCcEEEEEecccccccchhcc-cccCCCccCCCCcc
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVT----SISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV-TEWSGGLYVSPTVA  386 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvd----sis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~-~~~~g~~~~~~~~~  386 (438)
                      |++.+. |...... ..+++....|+|    +++.|+||++.+|.++|+++++++.+........ ..+..  .......
T Consensus       319 h~~~~~-f~~~~~g-~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~--~~~~~~s  394 (730)
T 1c4k_A          319 WVGYEQ-FIPMMRN-SSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNN--SFNLFMS  394 (730)
T ss_dssp             TCCGGG-SSGGGGG-GCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHH--HHHHHSC
T ss_pred             cccccc-cCcccCC-cCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHH--HHHHhCC
Confidence            975422 2110000 002333344777    9999999998888888999888765411000000 00000  0000112


Q ss_pred             CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      ++.+...++++-+++..+..++..+..++..++++++++.|++ ++|+++
T Consensus       395 tsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v  444 (730)
T 1c4k_A          395 TSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRP  444 (730)
T ss_dssp             SSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEE
Confidence            3344455677777887776644577788999999999999998 788775

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.86  E-value=2.8e-21  Score=191.18  Aligned_cols=230  Identities=13%  Similarity=0.014  Sum_probs=167.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCe---EEecCCCcCcH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPE---MIIPVSAHSAY  239 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~---Viv~~~~h~s~  239 (438)
                      .++.+.++.+++++.+++++|++++ +    +  +| |+|||+|+.+++..+.      +|   ++   |+....+|. +
T Consensus        44 r~~~~~~~~~~~r~~la~ll~~~~~~~----v--~f~t~~~T~a~n~~~~~~~------~~---~~~~~i~~~~~~~~-~  107 (361)
T 3m5u_A           44 RTKVFEEVHFGAQEKAKKLYELNDDYE----V--LFLQGGASLQFAMIPMNLA------LN---GVCEYANTGVWTKK-A  107 (361)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTCCTTEE----E--EEESSHHHHHHHHHHHHHC------CS---SCEEEEECSHHHHH-H
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCce----E--EEEcCcHHHHHHHHHHhcC------CC---CeEEEEeCCHHHHH-H
Confidence            3567788899999999999999743 4    5  77 9999999999998764      33   43   333344453 4


Q ss_pred             HHHHhhcCcEEEEeeCCCCCc--cCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          240 DKAAQYFNIKLWRVPVDKEFR--ADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~--~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      .+.++.+|++++.+++++++.  +++++ +  |+++|++|.+++.+|.+|++.|.     +++ +|+++|||++++.+..
T Consensus       108 ~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~  178 (361)
T 3m5u_A          108 IKEAQILGVNVKTVASSEESNFDHIPRV-E--FSDNADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR  178 (361)
T ss_dssp             HHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCTTSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSS
T ss_pred             HHHHHHcCCceEEEecccCcCCCcCChh-h--cCCCCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCC
Confidence            455677899999999998764  57776 4  89999999999999999998552     334 4999999999653332


Q ss_pred             hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC-Ccc-CCCCccCCCCCchHH
Q 013675          318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG-GLY-VSPTVAGSRPGGLIA  395 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g-~~~-~~~~~~gsr~~~~ia  395 (438)
                                 ++|+.  .+|++++++|||+ +|+|+|++++|++.+.+......+.+.. ... ......|+.+-..++
T Consensus       179 -----------~id~~--~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~  244 (361)
T 3m5u_A          179 -----------KVDFS--NIALFYGGVQKNA-GISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIY  244 (361)
T ss_dssp             -----------CCCCT--TEEEEEEETTTTS-SCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred             -----------CCCcc--cCCEEEEechhcc-CCCccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHH
Confidence                       35554  4899999999996 8999999999865432211000111100 000 011223455556688


Q ss_pred             HHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          396 GAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       396 ~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      ++.++++++-.. |++++.++..+++++++++|++++++
T Consensus       245 ~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~  283 (361)
T 3m5u_A          245 MFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGF  283 (361)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            899999988777 89999999999999999999999876

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.85  E-value=1.1e-20  Score=190.64  Aligned_cols=239  Identities=15%  Similarity=0.086  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675          168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      +..++.+++++.+++++|.+ .     .  +++++||+|+.+++++++.    .+|   ++|+++.++|.++..+++..|
T Consensus        39 g~~~l~~~l~~~la~~~g~~-~-----~--i~~~~gt~al~~~~~~~~~----~~g---d~Vl~~~~~~~~~~~~~~~~g  103 (418)
T 2c81_A           39 GEESMERKFAKAFADFNGVP-Y-----C--VPTTSGSTALMLALEALGI----GEG---DEVIVPSLTWIATATAVLNVN  103 (418)
T ss_dssp             SSCCHHHHHHHHHHHHHTCS-E-----E--EEESCHHHHHHHHHHHTTC----CTT---CEEEEESSSCTHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhCCC-c-----E--EEeCCHHHHHHHHHHHcCC----CCc---CEEEECCCccHhHHHHHHHcC
Confidence            33455667778899999987 2     2  7888899999999998721    356   899999999999999999999


Q ss_pred             cEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC
Q 013675          248 IKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       248 i~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      ++++.+|+++ ++.+|+++++++++++|++|++++   |+|...|+++|.++|+++|+++|+|++++.+.. + .  +. 
T Consensus       104 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-~-~--~~-  175 (418)
T 2c81_A          104 ALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPVH---LFGSMANMDEINEIAQEHNLFVIEDCAQSHGSV-W-N--NQ-  175 (418)
T ss_dssp             CEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCBC---CTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-E-T--TE-
T ss_pred             CEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEeC---CcCCcccHHHHHHHHHHCCCEEEEECcccccCc-c-C--CE-
Confidence            9999999987 789999999999999999888654   689999999999999999999999999987652 1 0  00 


Q ss_pred             CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc-cCC--------CccC----CCCccCCCCCch
Q 013675          327 IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE-WSG--------GLYV----SPTVAGSRPGGL  393 (438)
Q Consensus       327 ~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~-~~g--------~~~~----~~~~~gsr~~~~  393 (438)
                        ++. ....+++.++++||++.+ ...|+++.+++++.+........ ...        ..+.    .+...|......
T Consensus       176 --~~~-~~~~~~~~s~s~~K~~~~-g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  251 (418)
T 2c81_A          176 --RAG-TIGDIGAFSCQQGKVLTA-GEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLS  251 (418)
T ss_dssp             --ETT-SSSSEEEEECCTTSSSCS-SSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCC
T ss_pred             --ecc-cccceEEEeccCCcccCC-CCeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcC
Confidence              010 011267777778999544 35677666555543221110000 000        0011    011112111111


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                        .+.+++.....+++++..++..++++++.+.|+++|++++
T Consensus       252 --~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  291 (418)
T 2c81_A          252 --EFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKV  291 (418)
T ss_dssp             --HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Confidence              1122222223456788888899999999999999888765

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.85  E-value=1.5e-20  Score=189.79  Aligned_cols=215  Identities=16%  Similarity=0.109  Sum_probs=163.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh----cC
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY----FN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~----~G  247 (438)
                      ...++.+++++++|.+.      +  ++++||++|+.++++++.     ++|   ++|+++.+.|.+....+..    +|
T Consensus        82 ~~~~l~~~la~~~g~~~------~--~~~~sG~~Ai~~al~~l~-----~~G---d~Vi~~~~~y~~~~~~~~~~~~~~g  145 (414)
T 3ndn_A           82 TVSVFEERLRLIEGAPA------A--FATASGMAAVFTSLGALL-----GAG---DRLVAARSLFGSCFVVCSEILPRWG  145 (414)
T ss_dssp             HHHHHHHHHHHHHTCSE------E--EEESSHHHHHHHHHHTTC-----CTT---CEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCc------E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEcCCccchHHHHHHHHHHHcC
Confidence            45566678999998742      3  899999999999998875     367   8999999999997776654    89


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      ++++.+|.+     |+++|+++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+...        .
T Consensus       146 ~~~~~v~~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~--------~  212 (414)
T 3ndn_A          146 VQTVFVDGD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQ--------Q  212 (414)
T ss_dssp             CEEEEECTT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC--------C
T ss_pred             cEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccC--------C
Confidence            999999986     899999999999999999999999999999999999999999999999999754321        1


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCC---cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL  404 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g---~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~  404 (438)
                       ++   ..|+|+++.+++|++ ++.|   .|+++.+++.+..........+           |....  ...+|++++  
T Consensus       213 -~~---~~g~div~~S~sK~l-~~~G~~~~G~vv~~~~~~~~~l~~~~~~~-----------g~~~~--~~~a~~~~~--  272 (414)
T 3ndn_A          213 -GF---PLGVDVVVYSGTKHI-DGQGRVLGGAILGDREYIDGPVQKLMRHT-----------GPAMS--AFNAWVLLK--  272 (414)
T ss_dssp             -CG---GGTCSEEEEETTTTT-TCSSCCCCEEEEECHHHHTTHHHHHHHHH-----------CCCCC--HHHHHHHHH--
T ss_pred             -ch---hcCCCeEeccCCccc-cCCCCceEEEEEECHHHHHHHHHHHHHHc-----------CCCCC--HHHHHHHHH--
Confidence             22   347899999999994 5555   6887776543331111111111           11122  225666654  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          405 GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       405 g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.+.+..+.++..++++++.+.|++.|+++.
T Consensus       273 ~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~  303 (414)
T 3ndn_A          273 GLETLAIRVQHSNASAQRIAEFLNGHPSVRW  303 (414)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCEeE
Confidence            4466778888889999999999998887653

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.85  E-value=3.7e-20  Score=184.93  Aligned_cols=233  Identities=17%  Similarity=0.042  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++++|.+  .    +  ++|+|||+|+.++++++..    ++|   ++|+++.++|+++..+++..|++++.
T Consensus        58 ~~~l~~~la~~~~~~--~----~--i~~~~gt~al~~~l~~~~~----~~g---d~vl~~~~~~~~~~~~~~~~g~~~~~  122 (391)
T 3dr4_A           58 IVEFEKAFADYCGVK--H----A--IACNNGTTALHLALVAMGI----GPG---DEVIVPSLTYIASANSVTYCGATPVL  122 (391)
T ss_dssp             HHHHHHHHHHHHTCS--E----E--EEESSHHHHHHHHHHHHTC----CTT---CEEEEESSSCTHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhCCC--c----E--EEeCCHHHHHHHHHHHcCC----CCc---CEEEECCCchHHHHHHHHHCCCEEEE
Confidence            345556788888886  2    3  8999999999999998721    356   89999999999999999999999999


Q ss_pred             eeCC-CCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          253 VPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       253 v~~~-~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      +|++ +++.+|+++++++++++|++|+   ++||+|.+.|+++|.++|+++|+++++|++|+.+..+.    +.   +..
T Consensus       123 ~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~----~~---~~~  192 (391)
T 3dr4_A          123 VDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYR----GK---KSG  192 (391)
T ss_dssp             ECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET----TE---ETT
T ss_pred             EecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceEC----Ce---eec
Confidence            9998 4789999999999999998887   45689999999999999999999999999987543320    00   000


Q ss_pred             cCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc-ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHH
Q 013675          332 FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYL  410 (438)
Q Consensus       332 ~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~  410 (438)
                       ....+++.+++.||++.+ ...|+++.+++.+.+....... .+...........|......  .+.+++.....++++
T Consensus       193 -~~~di~~~S~s~~K~l~~-g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~--~l~aa~~~~~~~~~~  268 (391)
T 3dr4_A          193 -SLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMT--NIQAAIGLAQLERVD  268 (391)
T ss_dssp             -SSSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCC--HHHHHHHHHHHHTHH
T ss_pred             -ccCCEEEEECCCCCcCCc-CCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCC--HHHHHHHHHHHHHHH
Confidence             111367777779999644 4457767766544332111110 00000000111122222222  344444444557788


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          411 ENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       411 ~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +..++..++++++.+.|+++ ++++
T Consensus       269 ~~~~~~~~~~~~l~~~L~~~-g~~~  292 (391)
T 3dr4_A          269 EHLAARERVVGWYEQKLARL-GNRV  292 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHGGG-TTSE
T ss_pred             HHHHHHHHHHHHHHHHhhcC-Cccc
Confidence            89999999999999999987 6553

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.85  E-value=4.2e-20  Score=185.95  Aligned_cols=247  Identities=17%  Similarity=0.156  Sum_probs=171.5

Q ss_pred             chhHHHHHHHHHHHHHHHh------C--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          166 FQSVARFEAEVIAMTAALL------G--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~------g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      .++..++++.+.+++.+.+      |  .++++    +  ++|+|+|+|+.++++++.     .+|   ++|+++.++|+
T Consensus        74 ~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~----v--~~~~g~~~al~~~~~~l~-----~~g---d~vl~~~p~y~  139 (416)
T 1bw0_A           74 TVGSPEAREAVATWWRNSFVHKEELKSTIVKDN----V--VLCSGGSHGILMAITAIC-----DAG---DYALVPQPGFP  139 (416)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCT
T ss_pred             CCCCHHHHHHHHHHHHhhhcccccCCCCCCcce----E--EEeCChHHHHHHHHHHhC-----CCC---CEEEEcCCCcH
Confidence            3455667776666665322      2  34443    5  899999999999999875     367   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~  312 (438)
                      ++..+++..|++++.+|+++  ++.+|+++|+++++++++++++++|+||||.+.|   +++|+++|++||+++++|++|
T Consensus       140 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~  219 (416)
T 1bw0_A          140 HYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIY  219 (416)
T ss_dssp             HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred             hHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccc
Confidence            99999999999999999875  4679999999999989999999999999999998   999999999999999999999


Q ss_pred             cchhhhhhhhcC-CCCCCC-ccCCCCccEEEeCCCCCCCCC-CCcEEEEEecc-cccccchhcccccCCCccCCCCccCC
Q 013675          313 GGFVLPFAKKLG-YPIPPF-DFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNR-EIRKHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       313 gg~~~pf~~~~g-~~~p~~-~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~-~~~~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      +++...  ..-. ...+++ .+...+.++++.+++|++..| ..+|+++.+++ ++..........+..       ..++
T Consensus       220 ~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  290 (416)
T 1bw0_A          220 AGMVFK--GKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGM-------LVCG  290 (416)
T ss_dssp             TTCBCC--SSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHH-------HHTC
T ss_pred             cccccC--CCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhc-------cccC
Confidence            875421  0000 001111 111222356778999994333 34899888875 332211000000000       0001


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      -+....+++.++++....+++++..++..++++++.+.|+++|++++
T Consensus       291 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  337 (416)
T 1bw0_A          291 PCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP  337 (416)
T ss_dssp             SCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             CCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            11112334444554334678889999999999999999998888754

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.85  E-value=2.4e-20  Score=188.79  Aligned_cols=254  Identities=11%  Similarity=0.090  Sum_probs=173.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC--eEEecCCCcCc
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSA  238 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~--~Viv~~~~h~s  238 (438)
                      +....+..++++.+.+++.+.+|.+  +++    +  ++|+|||+|+.++++++..   .++|   +  +|+++.++|.+
T Consensus        78 y~~~~g~~~lr~~la~~~~~~~g~~~~~~~----i--~~t~g~t~al~~~~~~l~~---~~~g---d~~~Vl~~~p~~~~  145 (437)
T 3g0t_A           78 YPNLDGLPELKQEASRFAKLFVNIDIPARA----C--VPTVGSMQGCFVSFLVANR---THKN---REYGTLFIDPGFNL  145 (437)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESHHHHHHHHHHHHHTT---SCTT---CSCCEEEEESCCHH
T ss_pred             CCCCCChHHHHHHHHHHHHHhhCCCCCccc----E--EEeCCHHHHHHHHHHHHhc---CCCC---CccEEEEeCCCcHh
Confidence            3334455678888888888877764  333    6  8999999999999998750   0156   7  89999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhh-ccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I-~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +..+++..|++++.+|+++ ++.+|+++|++++ ++++++|++++|+||||.+.|   +++|+++|++||+++++|++|+
T Consensus       146 ~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~  225 (437)
T 3g0t_A          146 NKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYF  225 (437)
T ss_dssp             HHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchh
Confidence            9999999999999999975 6679999999999 778999999999999999987   7778999999999999999998


Q ss_pred             chhhhhhhhcCC-CC---CC--CccC-CCCccEEEeCCCCCCC-CCCCcEEEEEecccccc-cchhcccccCCCcc----
Q 013675          314 GFVLPFAKKLGY-PI---PP--FDFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRK-HQFVAVTEWSGGLY----  380 (438)
Q Consensus       314 g~~~pf~~~~g~-~~---p~--~~~~-~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~-~~~~~~~~~~g~~~----  380 (438)
                      .+...     +. ++   |+  ..+. ..+.++++.++||++. .+.++|+++.+++ +.. ..-.....+.++..    
T Consensus       226 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  299 (437)
T 3g0t_A          226 GMDFR-----KDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGK-LYEREYPDLEESFGRLRFGEAL  299 (437)
T ss_dssp             TCCTT-----SCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHH-HHHCBCGGGHHHHSCSBHHHHH
T ss_pred             hcccC-----CCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHH-HhhhhhhcccccccccchhHHH
Confidence            65541     11 01   11  1222 2566789999999943 3345899887643 332 10000000000000    


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHcHHH-----HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLGQEG-----YLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g-----~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ......++.......+++++...+....     +++..++..++++++.+.|+++ |+++
T Consensus       300 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  358 (437)
T 3g0t_A          300 SSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNI  358 (437)
T ss_dssp             HTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEE
T ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEE
Confidence            0000000000111223444443343322     7888899999999999999987 6553

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.85  E-value=1.2e-20  Score=190.84  Aligned_cols=237  Identities=12%  Similarity=0.077  Sum_probs=174.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCCC--CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~--~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      .++..++++++.+++.+.+|.+  ++ +    +  ++|+|||+|+.++++++.     .+|   ++|+++.+.|..+...
T Consensus        76 ~~g~~~l~~~la~~l~~~~g~~~~~~~~----v--~~~~g~~~a~~~~~~~~~-----~~g---d~Vl~~~p~y~~~~~~  141 (429)
T 1yiz_A           76 GFGHPRLVQALSKLYSQLVDRTINPMTE----V--LVTVGAYEALYATIQGHV-----DEG---DEVIIIEPFFDCYEPM  141 (429)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTSCCCTTTS----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCTTHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCCcCC----E--EEecChHHHHHHHHHHhc-----CCC---CEEEEcCCCchhHHHH
Confidence            3456788888888888888853  44 4    6  899999999999999875     266   8999999999999999


Q ss_pred             HhhcCcEEEEeeCCC----------CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          243 AQYFNIKLWRVPVDK----------EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~----------~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      ++..|++++.+|+++          ++.+|+++|++++++++++|++++|+||+|.+.|   +++|+++|++||+++++|
T Consensus       142 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D  221 (429)
T 1yiz_A          142 VKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSD  221 (429)
T ss_dssp             HHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEe
Confidence            999999999999875          3679999999999989999999999999999985   899999999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCc
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTV  385 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~  385 (438)
                      ++|+++...     |...+++. + ...+.|++..++||+ +++.|  +|+++.++ ++.+....... .         .
T Consensus       222 e~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~s~sK~-~~~~G~r~G~~~~~~-~~~~~l~~~~~-~---------~  284 (429)
T 1yiz_A          222 EVYEHMVFE-----PFEHIRICTLPGMWERTITIGSAGKT-FSLTGWKIGWAYGPE-ALLKNLQMVHQ-N---------C  284 (429)
T ss_dssp             CTTTTCBCT-----TSCCCCGGGSTTTGGGEEEEEEHHHH-HTCGGGCCEEEESCH-HHHHHHHHHHH-T---------T
T ss_pred             ccccccccC-----CCCCcChhhccCCcCceEEEecchhc-cCCCCcceEEEEeCH-HHHHHHHHHHh-h---------c
Confidence            999876531     11011222 2 134679999999998 56566  89987764 33322111100 0         0


Q ss_pred             cCCCCCchHHHHHHHHHHH----c--HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          386 AGSRPGGLIAGAWAALMSL----G--QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       386 ~gsr~~~~ia~~~aal~~~----g--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .++.+....+++.++++..    +  .+.+++..++..++++++.+.|+++ +++
T Consensus       285 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  338 (429)
T 1yiz_A          285 VYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMN  338 (429)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred             ccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence            0111111233444555441    3  4557788888889999999999875 443

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.85  E-value=4.1e-20  Score=184.37  Aligned_cols=238  Identities=15%  Similarity=0.094  Sum_probs=168.8

Q ss_pred             HHH-HHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          169 VAR-FEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       169 ~~~-~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      ..+ +++++.+++.+.+|  .++++    +  ++|+|+++++.++++++.     .+|   ++|+++.++|.++..+++.
T Consensus        65 ~~~~lr~~la~~l~~~~g~~~~~~~----v--~~t~g~~~al~~~~~~l~-----~~g---d~vl~~~p~y~~~~~~~~~  130 (390)
T 1d2f_A           65 KNDEFLAAIAHWFSTQHYTAIDSQT----V--VYGPSVIYMVSELIRQWS-----ETG---EGVVIHTPAYDAFYKAIEG  130 (390)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGG----E--EEESCHHHHHHHHHHHSS-----CTT---CEEEEEESCCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCHHH----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEEcCCCcHHHHHHHHH
Confidence            445 77778888887778  44444    6  899999999999999875     256   8999999999999999999


Q ss_pred             cCcEEEEeeCCCC---CccCHHHHHHhhcc-CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          246 FNIKLWRVPVDKE---FRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       246 ~Gi~v~~v~~~~~---~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      .|.+++.+|++++   +.+|+++|++++++ ++++|++++|+||||.+.|   +++|+++|++||+++++|++|+++...
T Consensus       131 ~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~  210 (390)
T 1d2f_A          131 NQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG  210 (390)
T ss_dssp             TTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS
T ss_pred             CCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence            9999999998743   46999999999986 7999999999999999977   889999999999999999999876531


Q ss_pred             hhhhcCCCCCCCccCCCCc-cEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGV-TSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gv-dsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                           |...+++.....+. |. ..+++|++. .+..+|+++.+++++.+.......   +..    + .++.+....++
T Consensus       211 -----g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~---~~~----~-~~~~~~~~~~a  276 (390)
T 1d2f_A          211 -----EQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALK---GRD----G-LSSPSVLALTA  276 (390)
T ss_dssp             -----SSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHH---TTS----C-CCSCCHHHHHH
T ss_pred             -----CCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHh---hhc----c-cCCCCHHHHHH
Confidence                 11011111111122 56 889999942 223479988876554432111111   000    0 00111111223


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      +.+++.. +.+.+++..++..++++++.+.|++ +|++++
T Consensus       277 ~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  315 (390)
T 1d2f_A          277 HIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNW  315 (390)
T ss_dssp             HHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence            3344432 4567788888999999999999988 787754

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.85  E-value=1.1e-19  Score=180.15  Aligned_cols=225  Identities=12%  Similarity=0.083  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675          170 ARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      .++++.+.+++.+.+|.+  +++    +  ++|+|+++++..+++++.     ++|   ++|+++.++|+++..+++..|
T Consensus        72 ~~l~~~la~~l~~~~g~~~~~~~----v--~~~~G~~~al~~~~~~l~-----~~g---d~Vl~~~~~y~~~~~~~~~~g  137 (369)
T 3cq5_A           72 VELRDELAAYITKQTGVAVTRDN----L--WAANGSNEILQQLLQAFG-----GPG---RTALGFQPSYSMHPILAKGTH  137 (369)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGG----E--EEESHHHHHHHHHHHHHC-----STT---CEEEEEESSCTHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhcccCCCChHh----E--EECCChHHHHHHHHHHhc-----CCC---CEEEEcCCChHHHHHHHHHcC
Confidence            578888888888877654  443    5  899999999999998875     366   899999999999999999999


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      .+++.+|.++++.+|++++++++++ ++++|++++|+||||.+.|++++.++|+.+++++++|++|+++...        
T Consensus       138 ~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~--------  209 (369)
T 3cq5_A          138 TEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPS--------  209 (369)
T ss_dssp             CEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCS--------
T ss_pred             CEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCC--------
Confidence            9999999887889999999999988 8999999999999999999999999999999999999999876531        


Q ss_pred             CCCCcc-CCCC-ccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          327 IPPFDF-SVQG-VTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       327 ~p~~~~-~~~g-vdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                      .+.... ...+ .+++..++||++ +++|  +|+++.++ ++.+........|            + .  ...+++++..
T Consensus       210 ~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~l~~~~~~~------------~-~--~~~~~~a~~~  272 (369)
T 3cq5_A          210 PSATTLLEKYPTKLVVSRTMSKAF-DFAGGRLGYFVANP-AFIDAVMLVRLPY------------H-L--SALSQAAAIV  272 (369)
T ss_dssp             CCGGGGTTTCTTTEEEEEESSSTT-SCGGGCCEEEEECT-HHHHHHHTTSCTT------------C-S--CHHHHHHHHH
T ss_pred             cchHHHHhhCCCCEEEEEechHhc-CCcccceEEEEeCH-HHHHHHHHcCCCC------------C-C--CHHHHHHHHH
Confidence            001211 2234 578899999995 4334  79988764 3332211111111            1 1  1123333333


Q ss_pred             HHc-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          403 SLG-QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       403 ~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+. .+.+++..++..++++++.+.|++. +++
T Consensus       273 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  304 (369)
T 3cq5_A          273 ALRHSADTLGTVEKLSVERVRVAARLEEL-GYA  304 (369)
T ss_dssp             HHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence            332 3457788888899999999999873 544

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.85  E-value=3.2e-20  Score=186.13  Aligned_cols=214  Identities=16%  Similarity=0.152  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYF  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~  246 (438)
                      ....++++++++++|.+ .     .  +++++|++|+.++++++.     ++|   ++|+++.+.|+++...+    +..
T Consensus        64 ~~~~~l~~~la~~~g~~-~-----~--i~~~sG~~a~~~~l~~~~-----~~g---d~vi~~~~~~~~~~~~~~~~~~~~  127 (398)
T 2rfv_A           64 PTTDALEKKLAVLERGE-A-----G--LATASGISAITTTLLTLC-----QQG---DHIVSASAIYGCTHAFLSHSMPKF  127 (398)
T ss_dssp             HHHHHHHHHHHHHHTCS-E-----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEESSSCHHHHHHHHTHHHHT
T ss_pred             hHHHHHHHHHHHHhCCC-c-----E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEcCCCcccHHHHHHHHHHHc
Confidence            45667778899999986 3     2  677778899999999875     366   89999999999988776    778


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      |++++.+|.+     |+++++++++++|++|++++|+||+|.+.|+++|+++|++||+++|+|++|+.+..+        
T Consensus       128 g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~--------  194 (398)
T 2rfv_A          128 GINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQ--------  194 (398)
T ss_dssp             TCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTC--------
T ss_pred             CCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC--------
Confidence            9999999875     899999999999999999999999999999999999999999999999999755431        


Q ss_pred             CCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH
Q 013675          327 IPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL  404 (438)
Q Consensus       327 ~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~  404 (438)
                      . ++   ..++|+++.++||++.+|.+  +|+++.+++.+..........+.+          ...  ....+++++..+
T Consensus       195 ~-~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~l  258 (398)
T 2rfv_A          195 Q-PL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITG----------GCM--SPFNAWLTLRGV  258 (398)
T ss_dssp             C-GG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTC----------CCC--CHHHHHHHHHHH
T ss_pred             C-ch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCC----------CCC--CHHHHHHHHhhh
Confidence            1 12   23689999999999767766  588877654332111111111101          011  122455555444


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          405 GQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       405 g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                        +.+.+..++..++++++.+.|++.+
T Consensus       259 --~~~~~~~~~~~~~~~~l~~~l~~~~  283 (398)
T 2rfv_A          259 --KTLGIRMERHCENALKIARFLEGHP  283 (398)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHcCC
Confidence              2234445556667777777776643

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.85  E-value=4.3e-20  Score=181.57  Aligned_cols=227  Identities=15%  Similarity=0.062  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++++|.++++    +  ++|+|||+|+.++++++.     ++|   ++|+++.++|.++...++..|++++.
T Consensus        53 ~~~l~~~la~~~~~~~~~----i--~~~~g~~~a~~~~~~~l~-----~~g---d~vl~~~~~~~~~~~~~~~~g~~~~~  118 (354)
T 3ly1_A           53 ILMLGNKLAAHHQVEAPS----I--LLTAGSSEGIRAAIEAYA-----SLE---AQLVIPELTYGDGEHFAKIAGMKVTK  118 (354)
T ss_dssp             HHHHHHHHHHHTTSCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEESSSCTHHHHHHHHTTCEEEE
T ss_pred             hHHHHHHHHHHhCCChHH----E--EEeCChHHHHHHHHHHHh-----CCC---CeEEECCCCchHHHHHHHHcCCEEEE
Confidence            456778899999987765    6  899999999999999875     367   89999999999999999999999999


Q ss_pred             eeCCCCCccCHHHHHHhhc--cCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          253 VPVDKEFRADVKAIKKYIN--RNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       253 v~~~~~~~~d~~~Le~~I~--~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +|.++++.+|+++|+++++  ++|++|++++|+||+|.+.|.+++.++++.  +|+++++|++|+++...     +...+
T Consensus       119 ~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~-----~~~~~  193 (354)
T 3ly1_A          119 VKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVND-----PRFRS  193 (354)
T ss_dssp             ECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCC-----TTCCC
T ss_pred             ecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccc-----cccCC
Confidence            9999889999999999998  789999999999999999999988888887  99999999999865431     10001


Q ss_pred             CCcc-CCC-CccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          329 PFDF-SVQ-GVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       329 ~~~~-~~~-gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                      .+.. ... +.++++.++||++. .+.++|+++.+ +++..........            ++-+....+++.++++  .
T Consensus       194 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~a~~~~l~--~  258 (354)
T 3ly1_A          194 ISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-PTVIALMGRYVAG------------EKINFSGVDAALASMN--D  258 (354)
T ss_dssp             SHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC-HHHHHHHGGGTTC------------SCCCHHHHHHHHHHTT--C
T ss_pred             HHHHhhhcCCCEEEEeeChhhccChhhhheeeecC-HHHHHHHHHhcCC------------CCCCHHHHHHHHHHhc--C
Confidence            1111 112 56788999999953 44567887764 4433322111111            1111112223333332  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+.+++..++..++++++.+.|+++ +++
T Consensus       259 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~  286 (354)
T 3ly1_A          259 SAFITYSKKSNDVSRQILLKALEDL-KLP  286 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            3667888889999999999999876 444

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.85  E-value=5.1e-20  Score=186.42  Aligned_cols=238  Identities=17%  Similarity=0.154  Sum_probs=171.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhC-----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          163 LDIFQSVARFEAEVIAMTAALLG-----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g-----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      |...++..++++    .++++++     .++++    +  ++|+|||+|+.++++++.+     +|   ++|+++.++|.
T Consensus        92 y~~~~g~~~lr~----~la~~~~~~~~~~~~~~----v--~~t~g~t~al~~~~~~l~~-----~g---d~vl~~~p~~~  153 (427)
T 3dyd_A           92 YAPSIGFLSSRE----EIASYYHCPEAPLEAKD----V--ILTSGCSQAIDLCLAVLAN-----PG---QNILVPRPGFS  153 (427)
T ss_dssp             CCCTTCCHHHHH----HHHHHHCBTTBCCCGGG----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEEESCCT
T ss_pred             CCCCCCcHHHHH----HHHHHHhhcCCCCChHH----E--EEecCcHHHHHHHHHHhcC-----CC---CEEEEcCCCch
Confidence            333444444444    5666666     44444    6  8999999999999999863     66   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~  312 (438)
                      .+...++..|++++.+|+++  ++.+|+++|++++++++++|++++|+||||.+.|   +++|+++|+++|+++++|++|
T Consensus       154 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay  233 (427)
T 3dyd_A          154 LYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIY  233 (427)
T ss_dssp             HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred             hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCc
Confidence            99999999999999999864  6789999999999999999999999999999999   999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCc-cEEEeCCCCC-CCCCCCcEEEEEecc------cccccchhc-ccccCCCccCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGV-TSISVDVHKY-GLAPKGTSVVLYRNR------EIRKHQFVA-VTEWSGGLYVSP  383 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gv-dsis~s~hK~-~~~p~g~g~l~~r~~------~~~~~~~~~-~~~~~g~~~~~~  383 (438)
                      +++...     |...+++....... .+++.+++|. +..+..+|+++.+++      ++....... ...|        
T Consensus       234 ~~~~~~-----g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~--------  300 (427)
T 3dyd_A          234 GDMVFS-----DCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRIL--------  300 (427)
T ss_dssp             TTCBCS-----SCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHC--------
T ss_pred             hhhccC-----CCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccC--------
Confidence            876531     11011121111122 3556799997 334445899888864      222111000 0011        


Q ss_pred             CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                          +.+....+++.+++.....+++++..++..++++++.+.|+++|++++
T Consensus       301 ----~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  348 (427)
T 3dyd_A          301 ----GPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRP  348 (427)
T ss_dssp             ----CSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             ----CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence                111112334445554445678899999999999999999999988764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.85  E-value=2.2e-20  Score=188.30  Aligned_cols=227  Identities=13%  Similarity=0.123  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----HhhcC
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----~~~~G  247 (438)
                      ...++++++++++|.+  +    +  ++|+|||+|+.++++++.     ++|   ++|+++.+.|.+....    ++..|
T Consensus        57 ~~~~l~~~la~~~g~~--~----~--~~~~~gt~a~~~al~~l~-----~~g---d~vi~~~~~~~~~~~~~~~~~~~~g  120 (412)
T 2cb1_A           57 TAKALEERLKALEGAL--E----A--VVLASGQAATFAALLALL-----RPG---DEVVAAKGLFGQTIGLFGQVLSLMG  120 (412)
T ss_dssp             HHHHHHHHHHHHHTCS--E----E--EEESSHHHHHHHHHHTTC-----CTT---CEEEEETTCCHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHhCCC--c----E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchhHHHHHHHHHHHcC
Confidence            3556667899999875  2    4  899999999999999874     256   8999999999886665    44579


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      ++++.+|++      +++|+++++++|++|++++|+||+|.+.|+++|+++|++||+++|+|++|+.+...         
T Consensus       121 ~~~~~~~~~------~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~---------  185 (412)
T 2cb1_A          121 VTVRYVDPE------PEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL---------  185 (412)
T ss_dssp             CEEEEECSS------HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS---------
T ss_pred             CEEEEECCC------HHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc---------
Confidence            999999864      89999999999999999999999999999999999999999999999999765211         


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCC-cEEEEEecccccccchh-cc-cccCCC---------cc------CCCCccCCC
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIRKHQFV-AV-TEWSGG---------LY------VSPTVAGSR  389 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~~~~~~-~~-~~~~g~---------~~------~~~~~~gsr  389 (438)
                        .+....++|+++.|+||++.+|.+ .|+++++++......+. .. +...|.         .+      ......|..
T Consensus       186 --~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~  263 (412)
T 2cb1_A          186 --CRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMA  263 (412)
T ss_dssp             --CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCC
T ss_pred             --CCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCC
Confidence              111234689999999999777776 77777766432100000 00 000000         00      000111221


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..  ..++|+.+.  +.+.+.+..++..++++++.+.|.+.|+++.
T Consensus       264 ~~--~~~a~~~~~--~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~  305 (412)
T 2cb1_A          264 LS--PFNAYLLFQ--GLETVALRVARMSETARFLAERLQGHPKVKA  305 (412)
T ss_dssp             CC--HHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTCSE
T ss_pred             CC--hHHhHHHHc--CCchHHHHHHHHHHHHHHHHHHHHcCCCeeE
Confidence            11  224455443  3345567777788899999999999888763

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.85  E-value=6.7e-20  Score=186.39  Aligned_cols=213  Identities=11%  Similarity=0.055  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----Hhhc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYF  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----~~~~  246 (438)
                      ....++++.+++++|.+ ..       +++++|++|+.++++++.     ++|   ++|+++.+.|.+....    ++.+
T Consensus       114 ~~~~~l~~~lA~l~g~~-~~-------v~~~sG~~Ai~~al~~l~-----~~G---d~Vi~~~~~y~~~~~~~~~~~~~~  177 (445)
T 1qgn_A          114 PTTVVLEEKISALEGAE-ST-------LLMASGMCASTVMLLALV-----PAG---GHIVTTTDCYRKTRIFIETILPKM  177 (445)
T ss_dssp             HHHHHHHHHHHHHHTCS-EE-------EEESCHHHHHHHHHHHHS-----CSS---CEEEEETTSCHHHHHHHHHTGGGG
T ss_pred             hHHHHHHHHHHHHhCCC-cE-------EEeCCHHHHHHHHHHHHh-----CCC---CEEEEcCCCchhHHHHHHHHHHHc
Confidence            34556667899999986 32       566667799999999865     367   8999999999886663    5667


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhccCc-EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCC
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINRNT-VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGY  325 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t-~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~  325 (438)
                      |++++.+|.+     |+++++++|+++| ++|++++|+||+|.+.|+++|+++|+++|+++|+|++|+.+..        
T Consensus       178 G~~v~~v~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~--------  244 (445)
T 1qgn_A          178 GITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN--------  244 (445)
T ss_dssp             TCEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT--------
T ss_pred             CCEEEEeCCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc--------
Confidence            9999999875     8999999999999 9999999999999999999999999999999999999874432        


Q ss_pred             CCCCCccCCCCccEEEeCCCCCCCCCCC---cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          326 PIPPFDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       326 ~~p~~~~~~~gvdsis~s~hK~~~~p~g---~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                          .+....|+|+++.|+||+ ++|.|   +|+++.++ ++........ ..          .|....  ...+|.+++
T Consensus       245 ----~~~~~~g~Div~~S~sK~-~gg~gd~~~G~l~~~~-~l~~~l~~~~-~~----------~g~~~~--~~~a~~~~~  305 (445)
T 1qgn_A          245 ----QKALALGADLVLHSATKF-LGGHNDVLAGCISGPL-KLVSEIRNLH-HI----------LGGALN--PNAAYLIIR  305 (445)
T ss_dssp             ----CCTTTTTCSEEEECTTTT-TTCSSSCCCEEEEECH-HHHHHHHHHH-HH----------HCCCCC--HHHHHHHHH
T ss_pred             ----CCccccCCEEEEECCccc-ccccccceEEEEEECH-HHHHHHHHHH-HH----------hCCCCC--HHHHHHHHH
Confidence                111235789999999999 56666   88877764 3332211100 00          111111  224555553


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      .  .+.+..+.++..++++++.+.|+++|++
T Consensus       306 ~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v  334 (445)
T 1qgn_A          306 G--MKTLHLRVQQQNSTALRMAEILEAHPKV  334 (445)
T ss_dssp             H--GGGHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3  3455666777788899999999998876

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.85  E-value=2e-20  Score=187.23  Aligned_cols=229  Identities=16%  Similarity=0.093  Sum_probs=166.9

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      .+..++.+++++++++++|.+  +    +  ++|+|||+|+.++++++.     .+|   ++|+++.+.|+++..+++..
T Consensus        84 ~g~~~~~~~l~~~la~~~g~~--~----v--~~~~ggt~a~~~~~~~~~-----~~g---d~V~~~~p~~~~~~~~~~~~  147 (398)
T 3a2b_A           84 NGTLDIHVELEEKLSAYVGKE--A----A--ILFSTGFQSNLGPLSCLM-----GRN---DYILLDERDHASIIDGSRLS  147 (398)
T ss_dssp             TCCCHHHHHHHHHHHHHHTCS--E----E--EEESSHHHHHHHHHHHSS-----CTT---CEEEEETTCCHHHHHHHHHS
T ss_pred             cCCcHHHHHHHHHHHHHhCCC--c----E--EEECCHHHHHHHHHHHHh-----CCC---CEEEECCccCHHHHHHHHHc
Confidence            344567788899999999974  3    5  899999999999999875     366   89999999999999999999


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      |.+++.+|.     +|+++|++++++    ++++|++++++||||.+.|+++|.++|++||+++++|++|+.+...   .
T Consensus       148 g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~---~  219 (398)
T 3a2b_A          148 FSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIG---H  219 (398)
T ss_dssp             SSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSS---G
T ss_pred             CCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccC---C
Confidence            999999986     589999999987    7999999999999999999999999999999999999999755321   0


Q ss_pred             cCCCCCCCcc-C-CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          323 LGYPIPPFDF-S-VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       323 ~g~~~p~~~~-~-~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                      .+  .+..+. . ..++|+++.++||+ ++|.| |+++.+ +++.+........|...        ++......+++.++
T Consensus       220 ~~--~~~~~~~~~~~~~di~~~s~sK~-~~~~G-G~~~~~-~~~~~~l~~~~~~~~~~--------~~~~~~~~a~~~~~  286 (398)
T 3a2b_A          220 KG--AGTASHFGLNDDVDLIMGTFSKS-LASLG-GFVAGD-ADVIDFLKHNARSVMFS--------ASMTPASVASTLKA  286 (398)
T ss_dssp             GG--CCHHHHHTCGGGCSEEEEESSST-TCSSC-EEEEEC-HHHHHHHHHHCHHHHSS--------BCCCHHHHHHHHHH
T ss_pred             CC--CchHhhcCCCcCCeEEEeccccc-ccCCC-cEEEeC-HHHHHHHHHhcccceec--------CCCCHHHHHHHHHH
Confidence            01  000010 1 12469999999999 56888 887775 44332211110111000        01111112234456


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++.+  +.+++..++..++++++.+.|+++ |+++
T Consensus       287 l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  318 (398)
T 3a2b_A          287 LEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDL  318 (398)
T ss_dssp             HHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence            6543  335678888899999999999887 5543

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.85  E-value=5e-20  Score=182.54  Aligned_cols=225  Identities=16%  Similarity=0.060  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.+  .    +  ++|+|||+|+.+++++++.    ++|   ++|+++..+|.++..++...|++++.+
T Consensus        38 ~~l~~~la~~~~~~--~----~--~~~~sGt~al~~al~~~~~----~~g---d~Vi~~~~~~~~~~~~~~~~G~~~~~~  102 (367)
T 3nyt_A           38 TELEDRLADFVGAK--Y----C--ISCANGTDALQIVQMALGV----GPG---DEVITPGFTYVATAETVALLGAKPVYV  102 (367)
T ss_dssp             HHHHHHHHHHHTCS--E----E--EEESCHHHHHHHHHHHTTC----CTT---CEEEEESSSCTHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhCCC--c----E--EEeCCHHHHHHHHHHHhCC----CCc---CEEEECCCccHHHHHHHHHcCCEEEEE
Confidence            34555788888886  2    3  8999999999999998731    356   899999999999999999999999999


Q ss_pred             eCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          254 PVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       254 ~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      |+++ ++.+|+++++++|+++|++|+   +++++|...|+++|.++|+++|+++|+|++++.+.. + .  +     ...
T Consensus       103 ~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~-~-~--~-----~~~  170 (367)
T 3nyt_A          103 DIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGAS-Y-K--G-----KRS  170 (367)
T ss_dssp             CBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCE-E-T--T-----EET
T ss_pred             ecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCe-E-C--C-----eec
Confidence            9987 489999999999999999887   677899999999999999999999999999863322 0 0  1     011


Q ss_pred             CCCCccEEEeC--CCCCCCCCCCcEEEEEecccccccchhcccccCCCc-cCCCCccCCCCCchHHHHHHHHHHHcHHHH
Q 013675          333 SVQGVTSISVD--VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL-YVSPTVAGSRPGGLIAGAWAALMSLGQEGY  409 (438)
Q Consensus       333 ~~~gvdsis~s--~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~-~~~~~~~gsr~~~~ia~~~aal~~~g~~g~  409 (438)
                      ...+ |++++|  +||++.++...|+++.+++++.........  .|.. .......|.........+.+++..  .+.+
T Consensus       171 ~~~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~--~g~~~~~~~~~~g~~~~~~~~~aa~~~~~--l~~~  245 (367)
T 3nyt_A          171 CNLS-TVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIAR--HGQDRRYHHIRVGVNSRLDTLQAAILLPK--LEIF  245 (367)
T ss_dssp             TSSS-SEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTB--TTEEETTEECSCCCBCCCCHHHHHHHHHH--HHTH
T ss_pred             cCCC-CEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHh--cCCCcCceeeccCcCCCccHHHHHHHHHH--HHHH
Confidence            1112 777777  589954323367766666655432211110  0100 000011122221111233333332  3456


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q 013675          410 LENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       410 ~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++..++..++++++.+.|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~L~~~  266 (367)
T 3nyt_A          246 EEEIALRQKVAAEYDLSLKQV  266 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccC
Confidence            778888899999999999887

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.84  E-value=9.1e-20  Score=183.16  Aligned_cols=232  Identities=16%  Similarity=0.128  Sum_probs=161.5

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---HH
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---AA  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---a~  243 (438)
                      +...++++.+++++++++|.++++    +  ++ ++||+|+.++++++.     ++|   ++|+++.++|.++..   ..
T Consensus        67 ~~~~~~~~~~~~~la~~~g~~~~~----i--~~-~sGt~a~~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~~~  131 (417)
T 3n0l_A           67 EFVDEIETLAIERCKKLFNCKFAN----V--QP-NSGSQANQGVYAALI-----NPG---DKILGMDLSHGGHLTHGAKV  131 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEEE----C--CC-SSHHHHHHHHHHHHS-----CTT---CEEEEECC------------
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCcc----e--Ee-ccHHHHHHHHHHHhc-----CCC---CEEEecccccccccchhhhh
Confidence            556778888999999999997665    3  44 455999999999875     367   899999999987654   33


Q ss_pred             hhc--CcEEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          244 QYF--NIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       244 ~~~--Gi~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      ...  ++.++.+++++++.+|+++|+++++ ++|++|++++++|  |.+.|+++|.++|++||+++++|++++.....  
T Consensus       132 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~--  207 (417)
T 3n0l_A          132 SSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVV--  207 (417)
T ss_dssp             ----CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHH--
T ss_pred             hhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhh--
Confidence            333  4566777777788899999999998 6899999888875  99999999999999999999999997544331  


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                        .+. . +.  ...++|+++.++||++.+|.| |+++.+++++.+........         ...++.....++++.++
T Consensus       208 --~~~-~-~~--~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~aa~~~a  271 (417)
T 3n0l_A          208 --AGE-H-PS--PFPYAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFP---------GIQGGPLMHVIAAKAVG  271 (417)
T ss_dssp             --TTS-S-CC--CTTTCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTT---------TTCSSCCHHHHHHHHHH
T ss_pred             --ccc-C-CC--ccccceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCC---------cccCCcHHHHHHHHHHH
Confidence              111 0 11  122579999999999766665 88877755544322111110         11122233345566667


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +.....+++++..++..++++++.+.|++ .+++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~  304 (417)
T 3n0l_A          272 FKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFK  304 (417)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCce
Confidence            76655677889999999999999999987 4554

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.84  E-value=2.5e-21  Score=197.45  Aligned_cols=220  Identities=12%  Similarity=0.023  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ...++++++++ +|.+ ..    +  ++|+|+|+|+.++++++.     ++|   ++|+++.++|.++..++...|++++
T Consensus        58 ~~~~~~~~la~-~g~~-~~----v--~~~~G~t~a~~~~~~a~~-----~~g---d~Vlv~~~~h~s~~~~~~~~G~~~~  121 (446)
T 2x3l_A           58 VILKSMKQVEK-HSDY-DG----Y--FLVNGTTSGILSVIQSFS-----QKK---GDILMARNVHKSVLHALDISQQEGH  121 (446)
T ss_dssp             HHHHHHHHHCS-CTTE-EE----E--EESSHHHHHHHHHHHTTT-----TSS---SCEEECTTCCHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHh-cCCC-ce----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEecCccHHHHHHHHHcCCeEE
Confidence            45677778999 9987 33    4  899999999999999885     367   8999999999999999999999999


Q ss_pred             EeeC--CCC----CccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCC
Q 013675          252 RVPV--DKE----FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGY  325 (438)
Q Consensus       252 ~v~~--~~~----~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~  325 (438)
                      .++.  +++    +.+|++++   +++++++|+++++| ++|.+.|+++|+++|++||+++|+|+++++ .+.|...   
T Consensus       122 ~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~~n-~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~---  193 (446)
T 2x3l_A          122 FIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTYPN-YYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGF---  193 (446)
T ss_dssp             ECEEEECTTTSSEEEEEC----------CCEEEEESSC-TTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTS---
T ss_pred             EEeCeeccccCcCCCCCHHHH---cCCCceEEEEECCC-CCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCC---
Confidence            9998  654    67899988   56789999999954 499999999999999999999999999987 4433211   


Q ss_pred             CCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       326 ~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                         +++....++|+++.|+||++++|.|+|+++.+++.+....+....        .....++.+...++++.++++.+.
T Consensus       194 ---~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~--------~~~~~~s~~~~~~aal~~a~~~l~  262 (446)
T 2x3l_A          194 ---PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYL--------SYFQTSSPSYLIMASLESAAQFYK  262 (446)
T ss_dssp             ---CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHH--------HHHSCSSCCHHHHHHHHHHHHHHH
T ss_pred             ---CCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHH--------HHHcCCCchHHHHHHHHHHHHHHH
Confidence               233344568999999999888999999999886633211111000        001123334445667777777776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 013675          406 QEGYLENTKAIMEVSESIQKG  426 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~  426 (438)
                      ..|.++..++..++++++++.
T Consensus       263 ~~g~~~~~~~~~~l~~~l~~~  283 (446)
T 2x3l_A          263 TYDSTLFFAKRAQLIECLENK  283 (446)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHHHHHc
Confidence            556556788888888888876

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.84  E-value=2.3e-19  Score=178.99  Aligned_cols=245  Identities=13%  Similarity=0.101  Sum_probs=170.0

Q ss_pred             HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675          150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP  227 (438)
Q Consensus       150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~  227 (438)
                      +++...+......+....+..++++++.+++.+.+|.+  +++    +  ++|+|||+|+.++++++.     ++|   +
T Consensus        51 ~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----v--~~t~g~~~al~~~~~~l~-----~~g---d  116 (391)
T 3h14_A           51 EALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGR----V--VITPGSSGGFLLAFTALF-----DSG---D  116 (391)
T ss_dssp             HHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESSHHHHHHHHHHHHC-----CTT---C
T ss_pred             HHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHH----E--EEecChHHHHHHHHHHhc-----CCC---C
Confidence            33433333333344444556788888888888888854  443    6  999999999999999875     367   8


Q ss_pred             eEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc
Q 013675          228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH  302 (438)
Q Consensus       228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~  302 (438)
                      +|+++.++|.++...++..|++++.+|+++  ++.+|+++++++   +|++|++++|+||||.+.|   +++|+++|++|
T Consensus       117 ~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~  193 (391)
T 3h14_A          117 RVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ  193 (391)
T ss_dssp             EEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999986  457899999987   7899999999999999987   88999999999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccC
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYV  381 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~  381 (438)
                      |+++++|++|+++...     +...+..  ...+.++++.+.+|.+. .+.++|+++.+++ +..........+..    
T Consensus       194 ~~~li~De~~~~~~~~-----~~~~~~~--~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~----  261 (391)
T 3h14_A          194 GASFISDEIYHGIEYE-----AKAVTAL--ELTDECYVINSFSKYFSMTGWRVGWMVVPED-QVRVVERIAQNMFI----  261 (391)
T ss_dssp             TCEEEEECTTTTCBSS-----SCCCCGG--GTCSSSEEEEESSSTTCCTTSCCEEEECCGG-GHHHHHHHHHHTTC----
T ss_pred             CCEEEEECcchhcccC-----CCCcChh--hcCCCEEEEEechhccCCccceeEEEEeCHH-HHHHHHHHHhhhcc----
Confidence            9999999999875531     1001111  12345678889999953 4455788776543 33221111111110    


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                            +-+....+++.+++.  +.+.+++..++..++++++.+.|++++
T Consensus       262 ------~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~  303 (391)
T 3h14_A          262 ------CAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAG  303 (391)
T ss_dssp             ------CCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------CCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                  111111223334443  567788889999999999999998763

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.84  E-value=6.4e-20  Score=184.04  Aligned_cols=216  Identities=16%  Similarity=0.136  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYF  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~  246 (438)
                      ....++++.+++++|.+ .     .  +++++||+|+.++++++.     ++|   ++|+++.+.|.++...+    ...
T Consensus        65 ~~~~~l~~~la~~~g~~-~-----~--i~~~sG~~a~~~~l~~~~-----~~g---d~vl~~~~~~~~~~~~~~~~~~~~  128 (398)
T 1gc0_A           65 PTLNLLEARMASLEGGE-A-----G--LALASGMGAITSTLWTLL-----RPG---DEVLLGNTLYGCTFAFLHHGIGEF  128 (398)
T ss_dssp             HHHHHHHHHHHHHHTCS-E-----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEESSCCSHHHHHHHHTGGGG
T ss_pred             hHHHHHHHHHHHHhCCC-c-----E--EEECCHHHHHHHHHHHHh-----cCC---CEEEEeCCCchhHHHHHHHHHHHc
Confidence            34556667889999986 3     2  677778999999999874     256   89999999999987765    667


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      |++++.+|.+     |+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++|+|++|+.+..+        
T Consensus       129 g~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~--------  195 (398)
T 1gc0_A          129 GVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQ--------  195 (398)
T ss_dssp             TCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHC--------
T ss_pred             CCEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccC--------
Confidence            9999999874     899999999999999999999999999999999999999999999999999866542        


Q ss_pred             CCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH
Q 013675          327 IPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL  404 (438)
Q Consensus       327 ~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~  404 (438)
                      . ++   ..++|+++.++||++.+|.+  .|+++.+++.+..........+.++          ...  ...+|+++..+
T Consensus       196 ~-~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~l  259 (398)
T 1gc0_A          196 R-PL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA----------VLS--PHDAALLMRGI  259 (398)
T ss_dssp             C-GG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC----------CCC--HHHHHHHHHHH
T ss_pred             C-ch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCC----------CCC--HHHHHHHHhcc
Confidence            1 22   24689999999999766765  5887776543321111100000111          111  22455555433


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          405 GQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       405 g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                        +.+....++..++++++.+.|+++|++
T Consensus       260 --~~~~~~~~~~~~~~~~l~~~L~~~~~v  286 (398)
T 1gc0_A          260 --KTLNLRMDRHCANAQVLAEFLARQPQV  286 (398)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             --chHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence              345667777788888888888876654

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.84  E-value=3.7e-20  Score=183.54  Aligned_cols=234  Identities=12%  Similarity=0.050  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675          170 ARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      .++++.+.+++.+.+|.+  +++    +  ++|+|||+|+..+++++.     ++|   ++|+++.++|.++...++..|
T Consensus        61 ~~lr~~la~~~~~~~~~~~~~~~----i--~~t~g~~~a~~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~~~g  126 (377)
T 3fdb_A           61 SLLSQATAEFYADRYGYQARPEW----I--FPIPDVVRGLYIAIDHFT-----PAQ---SKVIVPTPAYPPFFHLLSATQ  126 (377)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCGGG----E--EEESCHHHHHHHHHHHHS-----CTT---CCEEEEESCCTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHH----E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEcCCCcHhHHHHHHHcC
Confidence            567777788888777754  443    6  899999999999999875     367   899999999999999999999


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      ++++.+|++++  +|+++++++++++++++++++|+||||.+.|   +++|+++|++||+++++|++|+++...     |
T Consensus       127 ~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-----g  199 (377)
T 3fdb_A          127 REGIFIDATGG--INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFD-----G  199 (377)
T ss_dssp             CCEEEEECTTS--CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS-----S
T ss_pred             CEEEEccCCCC--CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcC-----C
Confidence            99999999876  9999999999999999999999999999976   667778899999999999999875431     1


Q ss_pred             -CCCCCC-ccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675          325 -YPIPPF-DFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       325 -~~~p~~-~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                       ...+++ .....+.+++..+++|.+. .+.++|+++..++++........ .+.         .++-+....+++.+++
T Consensus       200 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~a~~~~l  269 (377)
T 3fdb_A          200 QHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLS-PVI---------KDGASTLGLIAAEAAY  269 (377)
T ss_dssp             CCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSC-HHH---------HCCCCHHHHHHHHHHH
T ss_pred             CCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHH-Hhh---------cCCCCHHHHHHHHHHH
Confidence             100011 1111234588889999952 33457877776655443211100 000         0011111122333344


Q ss_pred             HHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          402 MSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      . .+.+.+++..++..++++++.+.|++ +|++++
T Consensus       270 ~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  303 (377)
T 3fdb_A          270 R-YGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKI  303 (377)
T ss_dssp             H-HCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred             h-ccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence            3 23566788899999999999999988 788764

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.84  E-value=1e-19  Score=182.12  Aligned_cols=230  Identities=13%  Similarity=0.032  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ...++++.+++++|.+  +    +  ++|+|||+|+.++++++.    ..+|   ++|+++.++|+++..+++..|++++
T Consensus        33 ~~~~l~~~la~~~~~~--~----v--~~~~ggt~al~~~~~~l~----~~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~   97 (394)
T 1o69_A           33 FVNRFEQSVKDYSKSE--N----A--LALNSATAALHLALRVAG----VKQD---DIVLASSFTFIASVAPICYLKAKPV   97 (394)
T ss_dssp             HHHHHHHHHHHHHCCS--E----E--EEESCHHHHHHHHHHHTT----CCTT---CEEEEESSSCGGGTHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHhCCC--c----E--EEeCCHHHHHHHHHHHcC----CCCC---CEEEECCCccHHHHHHHHHcCCEEE
Confidence            3445666788888873  2    4  899999999999999872    1356   8999999999999999999999999


Q ss_pred             EeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          252 RVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      .+|+++++.+|++++++++++   +|++|++++   ++|...|+++|.++|+++|+++++|++|+.+..+ .   +.   
T Consensus        98 ~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~---~~---  167 (394)
T 1o69_A           98 FIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFY-K---NK---  167 (394)
T ss_dssp             EECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-T---TE---
T ss_pred             EEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCccccee-C---Cc---
Confidence            999988889999999999987   799998886   6999999999999999999999999999732221 0   11   


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccccc-CCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW-SGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~-~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      +. ....++|+.+++.||. ++|.++|+++.+++++.+........+ ...........|.+.+..-..+.+++..  .+
T Consensus       168 ~~-~~~~~~~~~s~s~~K~-l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--l~  243 (394)
T 1o69_A          168 AL-GTFGEFGVYSYNGNKI-ITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQ--ME  243 (394)
T ss_dssp             ET-TSSSSEEEEECCTTSS-SCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHH--HT
T ss_pred             cc-ccccCcEEEEEeCCcc-CCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHH--HH
Confidence            00 0113589999999997 678889998887655443221111111 0111111122344443332233333322  24


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Q 013675          408 GYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .+++..++..++++++.+.|+++
T Consensus       244 ~l~~~~~~~~~~~~~l~~~L~~~  266 (394)
T 1o69_A          244 VLEQRVLKKREIYEWYKEFLGEY  266 (394)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            46778899999999999999875

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.84  E-value=6.6e-20  Score=181.13  Aligned_cols=226  Identities=13%  Similarity=0.057  Sum_probs=167.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++++|.++++    +  ++|+|+|+++.++++++.     ++|   ++|+++.++|.++...++..|++++.+|
T Consensus        69 ~lr~~la~~~~~~~~~----v--~~~~g~~~a~~~~~~~l~-----~~g---d~vl~~~~~~~~~~~~~~~~g~~~~~v~  134 (365)
T 3get_A           69 ELKSTLAQKYKVQNEN----I--IIGAGSDQVIEFAIHSKL-----NSK---NAFLQAGVTFAMYEIYAKQCGAKCYKTQ  134 (365)
T ss_dssp             HHHHHHHHHHTCCGGG----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEECSSCCTHHHHHHHHHTCEEEECS
T ss_pred             HHHHHHHHHhCCCcce----E--EECCCHHHHHHHHHHHHh-----CCC---CEEEEeCCChHHHHHHHHHcCCEEEEEe
Confidence            5666788899987665    6  899999999999999875     367   8999999999999999999999999999


Q ss_pred             C-CCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHH--HcCCeEEEeccccchhh--hhhhhcCCCCCC
Q 013675          255 V-DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL--SHGTCLHVDLCLGGFVL--PFAKKLGYPIPP  329 (438)
Q Consensus       255 ~-~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~--~~~i~lhVD~a~gg~~~--pf~~~~g~~~p~  329 (438)
                      + ++++ +|+++++++++++|++|++++|+||||.+.|++++.++++  ++|+++++|++|+.+..  .  ....  .+.
T Consensus       135 ~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~--~~~~--~~~  209 (365)
T 3get_A          135 SITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKD--SKKH--LEP  209 (365)
T ss_dssp             SSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHC--GGGC--CCH
T ss_pred             cCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccC--Cccc--ccH
Confidence            8 5688 9999999999999999999999999999999999988888  67999999999987652  1  0000  000


Q ss_pred             Cc-cCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          330 FD-FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       330 ~~-~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      .. ....+.++++.++||++. .+.++|+++. ++++..........|            +-+....+++.++++  ..+
T Consensus       210 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~--~~~  274 (365)
T 3get_A          210 CELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAPF------------NVSNLALKAAVAAMD--DDE  274 (365)
T ss_dssp             HHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCTT------------CSCHHHHHHHHHHHT--CHH
T ss_pred             hHHhccCCCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCCC------------CcCHHHHHHHHHHhC--CHH
Confidence            11 112345788889999953 4455898877 444433221111111            111111223334443  236


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++++..++..++++++.+.|+++ ++++
T Consensus       275 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~  301 (365)
T 3get_A          275 FTEKTLENNFSQMELYKEFAKKH-NIKI  301 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCEE
Confidence            78888899999999999999887 6543

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.84  E-value=3.5e-20  Score=187.81  Aligned_cols=227  Identities=15%  Similarity=0.106  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~Gi  248 (438)
                      ..++++.+++++|.+. .       +++++|++|+.++++++.     ++|   ++|+++.+.|.+...    .+..+|+
T Consensus        84 ~~~le~~lA~l~g~~~-~-------v~~~sG~~Ai~~al~al~-----~~G---d~Vi~~~~~y~~~~~~~~~~~~~~G~  147 (430)
T 3ri6_A           84 VEDLEQRLKNLTGALG-V-------LALGSGMAAISTAILTLA-----RAG---DSVVTTDRLFGHTLSLFQKTLPSFGI  147 (430)
T ss_dssp             HHHHHHHHHHHHTCSE-E-------EEESCHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCc-E-------EEECCHHHHHHHHHHHHh-----CCC---CEEEEcCCCchhHHHHHHHHHHHcCC
Confidence            3445557888998863 2       677788999999998875     367   899999999998777    6678899


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +++.+|.+     |+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+..           
T Consensus       148 ~~~~v~~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-----------  211 (430)
T 3ri6_A          148 EVRFVDVM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-----------  211 (430)
T ss_dssp             EEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-----------
T ss_pred             EEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----------
Confidence            99999976     89999999999999999999999999999999999999999999999999874332           


Q ss_pred             CCccCCCCccEEEeCCCCCCCCC--CCcEEEEEeccccccc--chhcccccCCCc-c------CCCCccCCCCCchHHHH
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKH--QFVAVTEWSGGL-Y------VSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~--~~~~~~~~~g~~-~------~~~~~~gsr~~~~ia~~  397 (438)
                       .+....|+|+++.|++|++.+|  .-.|+++.+.+.....  .+.....+.|.. +      ......|.....  ..+
T Consensus       212 -~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~--~~a  288 (430)
T 3ri6_A          212 -LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSP--HNA  288 (430)
T ss_dssp             -CCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCH--HHH
T ss_pred             -CChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCH--HHH
Confidence             2234457899999999996544  1345555444321100  000000000000 0      000011222222  245


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      |.++  .|.+.+..+.++..++++++.+.|++.|+++.+
T Consensus       289 ~l~l--~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V  325 (430)
T 3ri6_A          289 YLQS--LGLETMALRIERSCQNAQELAHWLLSIPQVKCV  325 (430)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred             HHHH--hhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEE
Confidence            5555  456778888899999999999999999887643

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.84  E-value=5.4e-20  Score=186.09  Aligned_cols=228  Identities=17%  Similarity=0.123  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhcC
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~G  247 (438)
                      ...++++.+++++|.+. .       +++++||+|+.++++++.     ++|   ++|+++...|.+....+    +..|
T Consensus        59 ~~~~l~~~la~~~g~~~-~-------v~~~sGt~A~~~~l~~~~-----~~g---d~vi~~~~~~~~~~~~~~~~~~~~g  122 (421)
T 2ctz_A           59 TVDVLEKRLAALEGGKA-A-------LATASGHAAQFLALTTLA-----QAG---DNIVSTPNLYGGTFNQFKVTLKRLG  122 (421)
T ss_dssp             HHHHHHHHHHHHHTCSE-E-------EEESSHHHHHHHHHHHHC-----CTT---CEEEECSCCCHHHHHHHHTHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCc-e-------EEecCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchHHHHHHHHHHHHcC
Confidence            34556667899998862 2       566667999999999874     366   89999999999987765    7789


Q ss_pred             cEEEEe-eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc-cchhhhhhhhcCC
Q 013675          248 IKLWRV-PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL-GGFVLPFAKKLGY  325 (438)
Q Consensus       248 i~v~~v-~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~-gg~~~pf~~~~g~  325 (438)
                      ++++.+ +.+     |+++++++|+++|++|++++++||+|.+.|+++|+++|+++|+++++|+++ +.+..        
T Consensus       123 ~~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~--------  189 (421)
T 2ctz_A          123 IEVRFTSREE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL--------  189 (421)
T ss_dssp             CEEEECCTTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS--------
T ss_pred             CEEEEECCCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc--------
Confidence            999999 764     899999999999999999999999999999999999999999999999999 53211        


Q ss_pred             CCCCCccCCCCccEEEeCCCCCCCCCCC-cEEEEEec--ccc----cccchhcccccCCCccC---------C------C
Q 013675          326 PIPPFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRN--REI----RKHQFVAVTEWSGGLYV---------S------P  383 (438)
Q Consensus       326 ~~p~~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~--~~~----~~~~~~~~~~~~g~~~~---------~------~  383 (438)
                       ..++   ..++|+++.++||++.+|.+ .|++++++  +++    ..........|.+..+.         .      .
T Consensus       190 -~~~~---~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~  265 (421)
T 2ctz_A          190 -LRPL---AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGL  265 (421)
T ss_dssp             -CCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHH
T ss_pred             -CCcc---ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHH
Confidence             1122   24689999999999766653 67667753  222    11100011112221100         0      0


Q ss_pred             CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      ...|.+....  .+|+++.  +.+.+.++.++..++++++.+.|+++|+++..
T Consensus       266 ~~~g~~~~~~--~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v  314 (421)
T 2ctz_A          266 RDQGQALGPF--EAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWV  314 (421)
T ss_dssp             HHHCCCCCHH--HHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred             HhcCCCCCHH--HHHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEE
Confidence            0012222222  4455543  34456667777789999999999999987653

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.84  E-value=2.8e-20  Score=190.91  Aligned_cols=235  Identities=12%  Similarity=0.078  Sum_probs=155.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCcc-ceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH------
Q 013675          168 SVARFEAEVIAMTAALLGNKEKASGGQV-CGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD------  240 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v-~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~------  240 (438)
                      ...++|+.+++++++++|.+.++    . +-+++++||+||..++.++.     ++|   |+|+++...|.+..      
T Consensus        97 ~~~~lE~~a~~~~a~l~g~~~~~----~~~~v~~~sGt~An~~al~al~-----~pG---D~Vl~~~~~h~g~l~h~~~~  164 (490)
T 2a7v_A           97 VVDEIELLCQRRALEAFDLDPAQ----WGVNVQPYSGSPANLAVYTALL-----QPH---DRIMGLDLPDGGHLTHGYMS  164 (490)
T ss_dssp             -CTHHHHHHHHHHHHHTTCCTTT----EEEECCCSSHHHHHHHHHHHHC-----CSC---EECCC---------------
T ss_pred             HHHHHHHHHHHHHHHHcCCCccc----CceEEeCCchHHHHHHHHHHHc-----CCC---CEecccCccccccccchhhh
Confidence            34578889999999999998753    1 12567799999999999886     378   99999998876532      


Q ss_pred             --HHHhhcCcEE--EEeeCC-CCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccc
Q 013675          241 --KAAQYFNIKL--WRVPVD-KEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       241 --~a~~~~Gi~v--~~v~~~-~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg  314 (438)
                        +.+...|..+  +.++++ +++.+|++++++++. .+|++|+++.+++|  ...|+++|+++|++||+++|+|++++.
T Consensus       165 ~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~  242 (490)
T 2a7v_A          165 DVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHIS  242 (490)
T ss_dssp             ----------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGH
T ss_pred             cchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEcccccc
Confidence              1334556544  444555 478999999999996 47888888777664  577999999999999999999999865


Q ss_pred             hhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccc--------------ccccchhcccccCCCcc
Q 013675          315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE--------------IRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~--------------~~~~~~~~~~~~~g~~~  380 (438)
                      .++.    .|. . +..+  .++|++++++||++.+|.| |+++.+++.              +.+. ...        .
T Consensus       243 glv~----~g~-~-~~~~--~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~-i~~--------~  304 (490)
T 2a7v_A          243 GLVA----AKV-I-PSPF--KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDR-INF--------A  304 (490)
T ss_dssp             HHHH----TTS-S-CCGG--GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHH-HHH--------H
T ss_pred             cccc----CCc-C-CCCC--CCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHH-HHH--------H
Confidence            4432    121 1 1112  3689999999999778887 888887641              1111 000        0


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..+...|+.....++++.+++...-.+.+++..++..++++++++.|++. |+++
T Consensus       305 ~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v  358 (490)
T 2a7v_A          305 VFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSL  358 (490)
T ss_dssp             HTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             hcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEE
Confidence            01122334444456677777766544567888999999999999999886 6654

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.84  E-value=2.4e-20  Score=201.17  Aligned_cols=230  Identities=14%  Similarity=0.089  Sum_probs=172.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..+.++.+++++|.+..     +  ++++|+|+|+..++.++.     ++|   |+|+++.+.|.++..++...|++++.
T Consensus       207 v~~~ee~la~l~G~d~~-----i--~~~~Gtt~a~~~~i~al~-----~~G---D~Vlv~~~~h~s~~~~~~~~G~~~v~  271 (755)
T 2vyc_A          207 FGESEKYAARVFGADRS-----W--SVVVGTSGSNRTIMQACM-----TDN---DVVVVDRNCHKSIEQGLMLTGAKPVY  271 (755)
T ss_dssp             HHHHHHHHHHHHTCSEE-----E--EESSHHHHHHHHHHHHHC-----CTT---CEEEEESSCCHHHHHHHHHHCCEEEE
T ss_pred             HHHHHHHHHHHhCCCce-----E--EECCcHHHHHHHHHHHhc-----CCC---CEEEECCCchHHHHHHHHHcCCEEEE
Confidence            44567789999998743     3  788888899999999976     377   99999999999999999999999999


Q ss_pred             eeCCCC-----Ccc-----CHHHHHHhhcc--CcE--------EEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675          253 VPVDKE-----FRA-----DVKAIKKYINR--NTV--------LIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       253 v~~~~~-----~~~-----d~~~Le~~I~~--~t~--------~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~  312 (438)
                      ++.+.+     +.+     |+++|+++|++  +++        ++++++| |++|.+.|+++|+++|++||+++|+|++|
T Consensus       272 v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~  350 (755)
T 2vyc_A          272 MVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAW  350 (755)
T ss_dssp             ECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTT
T ss_pred             EeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcC
Confidence            998643     345     99999999975  344        8889998 57999999999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCC--ccE------EEeCCCCCCCCCCCcEEEEEecc--cccccchhcccccCCCccCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQG--VTS------ISVDVHKYGLAPKGTSVVLYRNR--EIRKHQFVAVTEWSGGLYVS  382 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~g--vds------is~s~hK~~~~p~g~g~l~~r~~--~~~~~~~~~~~~~~g~~~~~  382 (438)
                      ++... |.....    +.... .+  +|+      ++.|+||++.+|.++|+++++++  .+....+......       
T Consensus       351 ~~~~~-~~~~~~----~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~-------  417 (755)
T 2vyc_A          351 YGYAR-FNPIYA----DHYAM-RGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMM-------  417 (755)
T ss_dssp             CTTGG-GCGGGT----TSSSS-CSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHH-------
T ss_pred             chhcc-cCcccC----Ccchh-cCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHH-------
Confidence            76432 211110    01111 34  555      99999999888888999988876  2211111110000       


Q ss_pred             CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          383 PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       383 ~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                       ...++.+...++++-++++.+..+|..+..++..+++++++++|+++++
T Consensus       418 -~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          418 -HATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             -TSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence             1113334455778888888887776678899999999999999998776

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.84  E-value=1.1e-19  Score=182.96  Aligned_cols=214  Identities=19%  Similarity=0.160  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcC
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~G  247 (438)
                      ..+++++.+++++|.+ .     +  ++++||++|+.++++++.     ++|   ++|+++.+.|+++..    .++..|
T Consensus        63 ~~~~l~~~ia~~~g~~-~-----~--i~~~~g~~ai~~~~~~l~-----~~g---d~Vl~~~~~y~~~~~~~~~~~~~~g  126 (404)
T 1e5e_A           63 TVSNLEGKIAFLEKTE-A-----C--VATSSGMGAIAATVLTIL-----KAG---DHLISDECLYGCTHALFEHALTKFG  126 (404)
T ss_dssp             HHHHHHHHHHHHHTCS-E-----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred             HHHHHHHHHHHHhCCC-c-----E--EEeCChHHHHHHHHHHHh-----CCC---CEEEEeCCCchhHHHHHHHHHHHcC
Confidence            3445667788889886 2     3  788888999999999875     367   899999999999888    788899


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH-cCCeEEEeccccchhhhhhhhcCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS-HGTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~-~~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      ++++.+|.+     |+++++++++++|++|++++|+||+|.+.|+++|+++|++ +|+++++|++|+.+...        
T Consensus       127 ~~~~~v~~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~--------  193 (404)
T 1e5e_A          127 IQVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT--------  193 (404)
T ss_dssp             CEEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC--------
T ss_pred             CEEEEECCC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC--------
Confidence            999999976     8999999999999999999999999999999999999999 99999999999876531        


Q ss_pred             CCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH
Q 013675          327 IPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL  404 (438)
Q Consensus       327 ~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~  404 (438)
                      . +++   .++|+++.++||++.+|.+  +|+++.+++.+.+........|.          |....  ...+|+++..+
T Consensus       194 ~-~~~---~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~----------g~~~~--~~~~~~~~~~l  257 (404)
T 1e5e_A          194 N-PVD---FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDIT----------GSVIS--PHDAWLITRGL  257 (404)
T ss_dssp             C-GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCC----------CCCCC--HHHHHHHHHHH
T ss_pred             C-ccc---cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCC----------CCCCC--HHHHHHHHHhH
Confidence            1 222   3789999999999767766  58888775433312111111110          11111  22566665544


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          405 GQEGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       405 g~~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      .  .+..+.++..++++.+.+.|++.+.
T Consensus       258 ~--~~~~~~~~~~~~~~~l~~~l~~~~~  283 (404)
T 1e5e_A          258 S--TLNIRMKAESENAMKVAEYLKSHPA  283 (404)
T ss_dssp             T--THHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            2  2455566667777777777776653

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.84  E-value=4e-21  Score=189.24  Aligned_cols=234  Identities=15%  Similarity=0.064  Sum_probs=167.4

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCCh-HHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGG-TESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~gg-t~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      .++..++.+++++++++++|.+. ++    +  ++|+|+ |+|+.+++.++....  ++|   ++|+++...|++. ..+
T Consensus        43 ~~~~~~~~~~l~~~la~~~g~~~~~~----v--~~~~g~gt~al~~~~~~l~~~~--~~g---~~vi~~~~~~~~~-~~~  110 (360)
T 1w23_A           43 SQSYEEVHEQAQNLLRELLQIPNDYQ----I--LFLQGGASLQFTMLPMNLLTKG--TIG---NYVLTGSWSEKAL-KEA  110 (360)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTEE----E--EEESSHHHHHHHHHHHHHCCTT--CEE---EEEECSHHHHHHH-HHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCce----E--EEECCcchHHHHHHHHHhcCCC--Ccc---cEEEecchhHHHH-HHH
Confidence            56777788899999999999973 33    5  889998 999999988875310  123   6788888888764 346


Q ss_pred             hhcCcEEEEeeCCC-CCccCHHHHHH-hhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          244 QYFNIKLWRVPVDK-EFRADVKAIKK-YINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~-~~~~d~~~Le~-~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      +.+| +++.+|+++ ++.+|++++++ +++++|++|++++++||||.+.|     +++++||+++++|++++.+..|   
T Consensus       111 ~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~---  181 (360)
T 1w23_A          111 KLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRP---  181 (360)
T ss_dssp             HTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSC---
T ss_pred             HHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCC---
Confidence            7789 999999986 67799999999 99989999999999999999965     3334899999999998754432   


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc-cC--CCCccCCCCCchHHHHH
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL-YV--SPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~-~~--~~~~~gsr~~~~ia~~~  398 (438)
                              ++...  .|+++.++||+ ++|.|+|+++.+++...... ... .|.... ..  .....++.+...++++.
T Consensus       182 --------~~~~~--~di~~~s~sK~-~~~~G~G~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (360)
T 1w23_A          182 --------LKVNQ--FGMIYAGAQKN-LGPSGVTVVIVKKDLLNTKV-EQV-PTMLQYATHIKSDSLYNTPPTFSIYMLR  248 (360)
T ss_dssp             --------CCGGG--CSEEEEETTTT-TSCTTCEEEEEEHHHHCSCC-TTC-CGGGCHHHHHHTTTCSSCCCHHHHHHHH
T ss_pred             --------cCccc--CCEEEEEcccc-cCCCCcEEEEEcHHHHhhcc-cCC-cchhhhhhhhhccCCCCCCCHHHHHHHH
Confidence                    22222  38999999998 57889999888755332111 100 110000 00  00111233333345666


Q ss_pred             HHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          399 AALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       399 aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      ++++.+... +++++.++..++++++.+.|++++++
T Consensus       249 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  284 (360)
T 1w23_A          249 NVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGF  284 (360)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCc
Confidence            777766555 78899999999999999999988754

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.84  E-value=2.1e-19  Score=180.12  Aligned_cols=230  Identities=17%  Similarity=0.045  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++++|.+  +    +  +++++||+|+.+++++++.    ++|   ++|+++.++|+++..+++..|++++.
T Consensus        65 ~~~l~~~la~~~~~~--~----~--v~~~~Gt~a~~~~l~~~~~----~~g---d~vl~~~~~~~~~~~~~~~~g~~~~~  129 (399)
T 2oga_A           65 LEGFEAEFAAYCETD--H----A--VGVNSGMDALQLALRGLGI----GPG---DEVIVPSHTYIASWLAVSATGATPVP  129 (399)
T ss_dssp             HHHHHHHHHHHTTSS--E----E--EEESCHHHHHHHHHHHTTC----CTT---CEEEEESSSCTHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHCCC--e----E--EEecCHHHHHHHHHHHhCC----CCc---CEEEECCCccHHHHHHHHHCCCEEEE
Confidence            345566788888876  2    3  7889999999999998721    256   89999999999999999999999999


Q ss_pred             eeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          253 VPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       253 v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      +|+++ ++.+|+++++++++++|++|+   ++||+|.+.|+++|.++|+++|+++++|++++.+...  .  +.   ++ 
T Consensus       130 ~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~--~--~~---~~-  198 (399)
T 2oga_A          130 VEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY--R--GR---RI-  198 (399)
T ss_dssp             ECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE--T--TE---ET-
T ss_pred             EecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc--C--Ce---ec-
Confidence            99987 688999999999998898877   4678999999999999999999999999999754321  0  10   11 


Q ss_pred             cCCCCccEEEeCCC--CCCCCCC-CcEEEEEecccccccchh-cccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          332 FSVQGVTSISVDVH--KYGLAPK-GTSVVLYRNREIRKHQFV-AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       332 ~~~~gvdsis~s~h--K~~~~p~-g~g~l~~r~~~~~~~~~~-~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                       . .-.|++++++|  |++ +|+ .+|+++.+++++.+.... ....+.. .+. ....|........++++++..+  +
T Consensus       199 -~-~~~di~~~S~~~sK~~-~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~-~~~-~~~~g~~~~~~~~~~a~~~~~l--~  271 (399)
T 2oga_A          199 -G-AGSSVAAFSFYPGKNL-GCFGDGGAVVTGDPELAERLRMLRNYGSRQ-KYS-HETKGTNSRLDEMQAAVLRIRL--A  271 (399)
T ss_dssp             -T-CTTCEEEEECCTTSSS-CCSSCCEEEEESCHHHHHHHHHHHBTTCSS-TTC-CCSCCCBCCCCHHHHHHHHHHH--H
T ss_pred             -c-cccCEEEEeCCCCccC-CcCCceEEEEeCCHHHHHHHHHHHhcCccc-ccc-ccccccCCCcCHHHHHHHHHHH--H
Confidence             1 11488888885  985 554 467777665555432111 1111100 010 1111211111122344433322  4


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+++..++..++++++.+.|+++|++++
T Consensus       272 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~  299 (399)
T 2oga_A          272 HLDSWNGRRSALAAEYLSGLAGLPGIGL  299 (399)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTTCTTCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCccc
Confidence            4566778888899999999999888765

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.84  E-value=4.1e-20  Score=183.33  Aligned_cols=238  Identities=16%  Similarity=0.093  Sum_probs=167.7

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHh-CCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALL-GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~-g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      ...+...++..++++    .+++++ +.++++    +  ++|+|||+|+.++++++.     ++|   ++|+++.+.|.+
T Consensus        56 ~~~y~~~~g~~~l~~----~la~~~~~~~~~~----v--~~~~g~~~a~~~~~~~l~-----~~g---d~Vl~~~~~~~~  117 (375)
T 3op7_A           56 KLNYGWIEGSPAFKK----SVSQLYTGVKPEQ----I--LQTNGATGANLLVLYSLI-----EPG---DHVISLYPTYQQ  117 (375)
T ss_dssp             CCSSCCTTCCHHHHH----HHHTTSSSCCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESSCTH
T ss_pred             CcCCCCCCChHHHHH----HHHHHhccCChhh----E--EEcCChHHHHHHHHHHhc-----CCC---CEEEEeCCCchh
Confidence            344444455555555    466665 455554    5  899999999999999875     367   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g  313 (438)
                      +...++..|.+++.+|+++  ++.+|+++++++++++|++|++++|+||+|.+.|   +++|.++|++||+++++|++|+
T Consensus       118 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~  197 (375)
T 3op7_A          118 LYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYR  197 (375)
T ss_dssp             HHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSC
T ss_pred             HHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            9999999999999999874  5679999999999999999999999999999999   9999999999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      ++...     +  .+.. ....+.+++..+++|.+. .+.++|+++. ++++.+........+.        .  +.+..
T Consensus       198 ~~~~~-----~--~~~~-~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~--------~--~~~~~  258 (375)
T 3op7_A          198 SFSEL-----D--VPSI-IEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTM--------I--CAGVF  258 (375)
T ss_dssp             CCSSS-----C--CCCH-HHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTT--------S--CCCHH
T ss_pred             ccccc-----C--CCch-hhhcCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhc--------c--CCCcH
Confidence            75431     1  1111 122345678888999953 3344688776 4544432211111000        0  00111


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..+++..++.. ..+.+++..++..++++++.+.|++.|++++
T Consensus       259 ~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  300 (375)
T 3op7_A          259 DDLVAQLALAH-YQEILERNRHILEENLAILDQWIEEEPLVSY  300 (375)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred             HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence            12223333432 2345667777778899999999988877654

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.84  E-value=1.7e-19  Score=178.33  Aligned_cols=223  Identities=13%  Similarity=0.082  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.++++    +  ++|+|+|+++.++++++       +|   ++|+++.++|.++...++..|.+++.+
T Consensus        62 ~~l~~~la~~~~~~~~~----v--~~~~g~~~al~~~~~~~-------~g---d~vl~~~p~y~~~~~~~~~~g~~~~~v  125 (364)
T 1lc5_A           62 FHLHQALARHHQVPASW----I--LAGNGETESIFTVASGL-------KP---RRAMIVTPGFAEYGRALAQSGCEIRRW  125 (364)
T ss_dssp             HHHHHHHHHHHTSCGGG----E--EEESSHHHHHHHHHHHH-------CC---SEEEEEESCCTHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHCcCHHH----E--EECCCHHHHHHHHHHHc-------CC---CeEEEeCCCcHHHHHHHHHcCCeEEEE
Confidence            35566788888887665    6  89999999999999886       34   789999999999999999999999999


Q ss_pred             eCCCCCccC-HHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          254 PVDKEFRAD-VKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       254 ~~~~~~~~d-~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      |.+++..++ ++++.+.+++++++|++++|+||||.+.|   +++|+++|++||+++++|++|+++...     +  .+.
T Consensus       126 ~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-----~--~~~  198 (364)
T 1lc5_A          126 SLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH-----E--TGF  198 (364)
T ss_dssp             ECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT-----C--CCS
T ss_pred             eCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC-----c--cch
Confidence            997522233 57677777778999999999999999988   899999999999999999999876531     1  111


Q ss_pred             Ccc-CCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-
Q 013675          330 FDF-SVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-  405 (438)
Q Consensus       330 ~~~-~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-  405 (438)
                      ++. ...+.++++.++||++ +++  .+|++++.++++.+........|            +   ....+++++...+. 
T Consensus       199 ~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~~~~------------~---~~~~~~~~~~~~l~~  262 (364)
T 1lc5_A          199 IPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDAAMARMRRQQMPW------------S---VNALAALAGEVALQD  262 (364)
T ss_dssp             GGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHHHHHHHHHHSCTT------------C---SCHHHHHHHHHGGGC
T ss_pred             hhHhccCCCEEEEEECchhh-cCCccceEEEEECCHHHHHHHHHhCCCC------------C---CCHHHHHHHHHHHhC
Confidence            222 2346789999999995 433  47987734455433221111111            0   11224444444443 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+.+++..++..++++++.+.|+++|++++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  292 (364)
T 1lc5_A          263 SAWQQATWHWLREEGARFYQALCQLPLLTV  292 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            256778888889999999999998888764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.84  E-value=8.3e-20  Score=182.78  Aligned_cols=214  Identities=16%  Similarity=0.102  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----HhhcC
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----~~~~G  247 (438)
                      ...++++.+++++|.+ .     .  +++++|++|+.++++++.     ++|   ++|+++.+.|.+....    ++.+|
T Consensus        60 ~~~~l~~~la~~~g~~-~-----~--i~~~sG~~ai~~~~~~~~-----~~g---d~vl~~~~~y~~~~~~~~~~~~~~g  123 (389)
T 3acz_A           60 TVEQFEEMVCSIEGAA-G-----S--AAFGSGMGAISSSTLAFL-----QKG---DHLIAGDTLYGCTVSLFTHWLPRFG  123 (389)
T ss_dssp             HHHHHHHHHHHHHTCS-E-----E--EEESSHHHHHHHHHTTTC-----CTT---CEEEEESSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCC-e-----E--EEeCCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchHHHHHHHHHHHHcC
Confidence            3455666789999986 3     2  677889999999998764     266   8999999999987665    57789


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      ++++.+|.+     |+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+..      +  .
T Consensus       124 ~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~------~--~  190 (389)
T 3acz_A          124 IEVDLIDTS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCF------L--K  190 (389)
T ss_dssp             CEEEEECTT-----CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT------C--C
T ss_pred             CEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc------c--C
Confidence            999999873     89999999999999999999999999999999999999999999999999976542      0  1


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                       +++   .++|+++.++||++.+|.+  .|+++.+++++.+........| |          ....  ...+|+++..+ 
T Consensus       191 -~~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~-g----------~~~~--~~~~~~~~~~l-  252 (389)
T 3acz_A          191 -PLE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDA-G----------SLMA--PMDAFLCARGM-  252 (389)
T ss_dssp             -GGG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-C----------CCCC--HHHHHHHHHHH-
T ss_pred             -ccc---cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhc-C----------CCCC--HHHHHHHHcCc-
Confidence             233   4789999999999777776  6888877524432211111111 1          1111  22566666444 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                       +.+..+.++..++++.+.+.|++.+.+
T Consensus       253 -~~l~~r~~~~~~~~~~l~~~l~~~~~v  279 (389)
T 3acz_A          253 -KTLPIRMQIHMENGLKVAKFLEQHEKI  279 (389)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence             344556667777888888888776543

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.7e-20  Score=191.08  Aligned_cols=241  Identities=16%  Similarity=0.177  Sum_probs=173.7

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      +|....+..++++++.+++.+.+|.+  +++    +  ++|+||++|+.++++++.+     +|   ++|+++.+.|.++
T Consensus        90 ~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~----v--~~t~G~~~al~~~~~~l~~-----~g---d~Vlv~~p~y~~~  155 (447)
T 3b46_A           90 QYSPTRGRPSLINSLIKLYSPIYNTELKAEN----V--TVTTGANEGILSCLMGLLN-----AG---DEVIVFEPFFDQY  155 (447)
T ss_dssp             SCCCTTCCHHHHHHHHHHHTTTTTSCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTTH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCChhh----E--EEeCCHHHHHHHHHHHHcC-----CC---CEEEEeCCCchhH
Confidence            34444566788888888888877764  333    6  8999999999999998753     67   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC------------CCccCHHHHHHhhccCcEEEEEecCCCCCcccc---CHHHHHHHHHHcCC
Q 013675          240 DKAAQYFNIKLWRVPVDK------------EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGELALSHGT  304 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~------------~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id---di~~I~~la~~~~i  304 (438)
                      ...++..|.+++.+|+++            ++.+|+++|+++++++|++|++++|+||||.+.   ++++|+++|++||+
T Consensus       156 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~  235 (447)
T 3b46_A          156 IPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNV  235 (447)
T ss_dssp             HHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCc
Confidence            999999999999999864            468999999999998999999999999999985   58999999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCC-cc--CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCc
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPF-DF--SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGL  379 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~-~~--~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~  379 (438)
                      ++++|++|+++...     |. .+++ .+  ...+.++++.++||+ +++.|  +|+++.+++++.+........     
T Consensus       236 ~li~De~~~~~~~~-----g~-~~~~~~~~~~~~~~~i~i~S~sK~-~~~~G~riG~~~~~~~~l~~~l~~~~~~-----  303 (447)
T 3b46_A          236 VIISDEVYEHLYFT-----DS-FTRIATLSPEIGQLTLTVGSAGKS-FAATGWRIGWVLSLNAELLSYAAKAHTR-----  303 (447)
T ss_dssp             EEEEECTTTTCBCS-----SC-CCCGGGSCHHHHTTEEEEEEHHHH-TTCTTSCCEEEECSCHHHHHHHHHHHHH-----
T ss_pred             EEEEeccchhcccC-----CC-CcCHHHcCCCCCCcEEEEecCchh-cCCcchhhEEEEeCCHHHHHHHHHHHhh-----
Confidence            99999999875431     10 1111 11  124679999999999 45445  899887345443321110000     


Q ss_pred             cCCCCccCCCCCchHHHHHHHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          380 YVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       380 ~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                           ...+.+....+++.++|.... .+.+++..++..++++++.+.|+++ |++
T Consensus       304 -----~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  353 (447)
T 3b46_A          304 -----ICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLP  353 (447)
T ss_dssp             -----HTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             -----ccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence                 000111112234444554322 3446778888899999999999875 443

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.84  E-value=1.6e-19  Score=177.75  Aligned_cols=222  Identities=14%  Similarity=0.072  Sum_probs=164.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.++++    +  ++|+|||+|+.++++++            ++|+++.++|.++...++..|++++.+
T Consensus        64 ~~l~~~la~~~~~~~~~----i--~~~~g~t~al~~~~~~~------------d~vi~~~~~~~~~~~~~~~~g~~~~~~  125 (361)
T 3ftb_A           64 RRLNKSIENYLKLKDIG----I--VLGNGASEIIELSISLF------------EKILIIVPSYAEYEINAKKHGVSVVFS  125 (361)
T ss_dssp             HHHHHHHHHHHTCCSCE----E--EEESSHHHHHHHHHTTC------------SEEEEEESCCTHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhCCCcce----E--EEcCCHHHHHHHHHHHc------------CcEEEecCChHHHHHHHHHcCCeEEEe
Confidence            45666788888987765    6  89999999999998875            479999999999999999999999999


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      |+++++.+|++++++++++ ++++++++|+||+|.+.|   +++|+++|++||+++++|++|+++...     +. .+..
T Consensus       126 ~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-----~~-~~~~  198 (361)
T 3ftb_A          126 YLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-----PS-SSFV  198 (361)
T ss_dssp             ECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-----TT-SSSG
T ss_pred             ecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-----cc-cchh
Confidence            9998888999999999998 999999999999999976   667888888999999999999876541     00 0011


Q ss_pred             cc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      .. ...+.+++..+++|.+. .+.++|++++.++++.+........|            +-+....+++.++++  ..++
T Consensus       199 ~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~--~~~~  264 (361)
T 3ftb_A          199 GEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPW------------NINCFAEMAAINCLK--DTNY  264 (361)
T ss_dssp             GGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTT------------CSCHHHHHHHHHTSS--CHHH
T ss_pred             HhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCC------------CCCHHHHHHHHHHhc--CHHH
Confidence            11 12234577789999953 33457887756666544322111111            111111223333333  2467


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +++..++..++++++.+.|+++|+++
T Consensus       265 ~~~~~~~~~~~~~~l~~~l~~~~~~~  290 (361)
T 3ftb_A          265 IEESLLWIKKERKRFIEELNKIGFIK  290 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            78888999999999999999998876

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.84  E-value=1.3e-19  Score=182.28  Aligned_cols=236  Identities=13%  Similarity=0.097  Sum_probs=168.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCC--C-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNK--E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~--~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      .++..++++.+.+++.+.+|.+  + ++    +  ++|+|||+|+.++++++.     .+|   ++|+++.++|+++...
T Consensus        74 ~~g~~~l~~~ia~~~~~~~g~~~~~~~~----v--~~t~g~~~a~~~~~~~~~-----~~g---d~Vl~~~p~~~~~~~~  139 (412)
T 2x5d_A           74 SRGIPRLRRAISHWYRDRYDVQIDPESE----A--IVTIGSKEGLAHLMLATL-----DHG---DTILVPNPSYPIHIYG  139 (412)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCCCCTTTS----E--EEESCHHHHHHHHHHHHC-----CTT---CEEEEEESCCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCCCcC----E--EEcCChHHHHHHHHHHhC-----CCC---CEEEEcCCCchhHHHH
Confidence            4556778888888887777863  3 33    6  999999999999999875     366   8999999999999999


Q ss_pred             HhhcCcEEEEeeCCCC--CccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhh
Q 013675          243 AQYFNIKLWRVPVDKE--FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~--~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ++..|++++.+|++++  +.+|++++++++++++++|++++|+||||.+.|   +++|+++|++||+++++|++|+++..
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  219 (412)
T 2x5d_A          140 AVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY  219 (412)
T ss_dssp             HHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             HHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence            9999999999999863  458999999999989999999999999999976   68899999999999999999987653


Q ss_pred             hhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          318 PFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       318 pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      .     |...+++ .+. ..+.++++.++||++ +++  .+|+++.+ +++..........+.          ++-+...
T Consensus       220 ~-----g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~~~~~----------~~~~~~~  282 (412)
T 2x5d_A          220 D-----GWKAPSIMQVPGAKDIAVEFFTLSKSY-NMAGWRIGFMVGN-PELVSALARIKSYHD----------YGTFTPL  282 (412)
T ss_dssp             T-----TCCCCCGGGSTTGGGTEEEEEECC-CC-SCTTSCCEEEEEC-HHHHHHHHHHHHHHC----------CCCCHHH
T ss_pred             C-----CCCCCChhhccCccCcEEEEecCcccc-CCcccceEEEEcC-HHHHHHHHHHHhhhc----------cCCCHHH
Confidence            1     1101111 111 135789999999995 433  47998875 443322111110000          0111111


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+++.+++. .+.+.+++..++..++++++.+.|+++ +++
T Consensus       283 ~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  321 (412)
T 2x5d_A          283 QVAAIAALE-GDQQCVRDIARQYQQRRDVLVKGLREA-GWM  321 (412)
T ss_dssp             HHHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             HHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence            222233332 234667888889999999999999875 444

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.84  E-value=1e-19  Score=180.67  Aligned_cols=234  Identities=17%  Similarity=0.105  Sum_probs=168.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCC--C-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKE--K-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~--~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      .++..++++.+.+++.+.+|.+.  + +    +  ++|+|+++++.++++++.     ++|   ++|+++.++|.++...
T Consensus        62 ~~~~~~l~~~ia~~~~~~~g~~~~~~~~----v--~~~~g~~~a~~~~~~~l~-----~~g---d~vl~~~p~y~~~~~~  127 (376)
T 2dou_A           62 KSCTLPFLEEAARWYEGRYGVGLDPRRE----A--LALIGSQEGLAHLLLALT-----EPE---DLLLLPEVAYPSYFGA  127 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCCTTTS----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEESSCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCcc----E--EEcCCcHHHHHHHHHHhc-----CCC---CEEEECCCCcHhHHHH
Confidence            35677788888888887779862  3 3    6  899999999999999875     256   8999999999999999


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ++..|++++.+|++.++.+|++++++++++++++|++++|+||||.+.|   +++|+++|++||+++++|++|+++... 
T Consensus       128 ~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-  206 (376)
T 2dou_A          128 ARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYE-  206 (376)
T ss_dssp             HHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS-
T ss_pred             HHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccC-
Confidence            9999999999999546679999999999888999999999999999977   678999999999999999999876531 


Q ss_pred             hhhcCCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          320 AKKLGYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       320 ~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                          |...+.++. ...+.+++..+++|++. .+..+|+++.+ +++.+........|..          +-+....+++
T Consensus       207 ----~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~----------~~~~~~~~a~  271 (376)
T 2dou_A          207 ----GEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS-EEALARLERVKGVIDF----------NQYAGVLRMG  271 (376)
T ss_dssp             ----SCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC-HHHHHHHHHHHHHHCC----------CSCHHHHHHH
T ss_pred             ----CCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC-HHHHHHHHHHHHhccc----------CCCHHHHHHH
Confidence                110111222 12345788889999942 23347987664 4443321111111110          0011112233


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .++++. +.+.+++..++..++++++.+.|+++
T Consensus       272 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~  303 (376)
T 2dou_A          272 VEALKT-PKEVVRGYARVYRERALGMAEALKGV  303 (376)
T ss_dssp             HHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333432 35677888888999999999999875

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.84  E-value=6.7e-20  Score=184.42  Aligned_cols=218  Identities=17%  Similarity=0.084  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeE---cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-CCcCcHHH--------
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNM---TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDK--------  241 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~---t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-~~h~s~~~--------  241 (438)
                      +++.+.+++++|.+..        ++   +++||+|+.+++.++.     ++|   |+|+++. +.|..+..        
T Consensus        62 ~~Le~~lA~l~g~e~a--------lv~p~~~sGt~Ai~~al~all-----~~G---D~Vl~~~~~~y~~~~~~~~~~g~~  125 (409)
T 3jzl_A           62 DTLERVYATVFKTEAA--------LVRPQIISGTHAISTVLFGIL-----RPD---DELLYITGQPYDTLEEIVGIRKQG  125 (409)
T ss_dssp             HHHHHHHHHHHTCSEE--------EEETTSCSHHHHHHHHHHHHC-----CTT---CEEEECSSSCCTTHHHHHTSSSSS
T ss_pred             HHHHHHHHHHhCCCcE--------EEECCCccHHHHHHHHHHHhc-----CCC---CEEEEeCCCCcHhHHHHHhcccch
Confidence            3444578999998643        44   8999999999998875     377   8999998 88888774        


Q ss_pred             --HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEec----CCCCCccccCHHHHHHHHHH--cCCeEEEecccc
Q 013675          242 --AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSA----PGFPHGIIDPIQELGELALS--HGTCLHVDLCLG  313 (438)
Q Consensus       242 --a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~----~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~g  313 (438)
                        .++.+|++++.+|+++++.+|+++++++++++|++|++++    |+||+|.+.|+++|+++|++  +|+++|+|++|+
T Consensus       126 ~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~  205 (409)
T 3jzl_A          126 QGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYG  205 (409)
T ss_dssp             SSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred             hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcc
Confidence              4466799999999988999999999999999999999999    99999999999999999999  999999999987


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC--CCcEEEEEecccccccchh-cccccCCCccCCCCccCCCC
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFV-AVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~~~~-~~~~~~g~~~~~~~~~gsr~  390 (438)
                      .++..           .+....|+|+++.++||++.++  ...|+++.+ +++.+.... ....+.+..      .|...
T Consensus       206 ~~~~~-----------~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~------~g~~~  267 (409)
T 3jzl_A          206 EFVEY-----------QEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGRE------AGASL  267 (409)
T ss_dssp             TTTSS-----------CCSGGGTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGG------CCCCT
T ss_pred             ccccc-----------CCccccCCeEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhcccccccc------ccccH
Confidence            55421           1123357899999999995443  224776665 444332211 111111100      11111


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      .    ..+++++  |......+.++..++++++++.|++++
T Consensus       268 ~----~~~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~g  302 (409)
T 3jzl_A          268 Y----SLLEMYQ--GFFLAPHVTAQAIKGARFTAAMLAEFG  302 (409)
T ss_dssp             T----CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             H----HHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1    1233432  334456778888999999999999873

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.84  E-value=3.1e-19  Score=180.67  Aligned_cols=226  Identities=18%  Similarity=0.143  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcE
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK  249 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~  249 (438)
                      .+...++++.+++++|.+ .     .  +++++|++|+..+++++.     ++|   ++|+++.+.|.++..+++..|.+
T Consensus       108 ~~~~~~l~~~la~~~g~~-~-----~--i~~~sGs~a~~~al~~l~-----~~g---d~vl~~~~~h~~~~~~~~~~g~~  171 (427)
T 2w8t_A          108 FHDHMEVEQALRDFYGTT-G-----A--IVFSTGYMANLGIISTLA-----GKG---EYVILDADSHASIYDGCQQGNAE  171 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCS-E-----E--EEESCHHHHHHHHHHHHS-----CTT---CEEEEETTCCHHHHHHHHHSCSE
T ss_pred             cHHHHHHHHHHHHHhCCC-c-----e--EEecCcHHHHHHHHHHhc-----CCC---CEEEECCcccHHHHHHHHHcCCe
Confidence            355667778899999875 2     2  678888999999888864     366   89999999999999999999999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGY  325 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~  325 (438)
                      ++.+|.     .|+++|++++++    ++++|++++++||+|.+.|+++|.++|++||+++++|++|+++..+   ..|.
T Consensus       172 ~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~---~~g~  243 (427)
T 2w8t_A          172 IVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG---PNGR  243 (427)
T ss_dssp             EEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSS---TTSC
T ss_pred             eEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccC---CCCC
Confidence            998874     589999999986    7899999999999999999999999999999999999999876652   1111


Q ss_pred             CCCC-CccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH
Q 013675          326 PIPP-FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL  404 (438)
Q Consensus       326 ~~p~-~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~  404 (438)
                      .... ++. ..++|++..++||++ ++.| |+++.++ ++.+........|.        ..++.+...++++.++++.+
T Consensus       244 ~~~~~~~~-~~~~di~~~s~sK~~-g~~g-G~v~~~~-~l~~~l~~~~~~~~--------~~~~~~~~~~aa~~~al~~~  311 (427)
T 2w8t_A          244 GVYEAQGL-EGQIDFVVGTFSKSV-GTVG-GFVVSNH-PKFEAVRLACRPYI--------FTASLPPSVVATATTSIRKL  311 (427)
T ss_dssp             CHHHHTTC-TTCCSEEEEESSSTT-CSCC-EEEEECC-TTGGGGGGTCHHHH--------SSCCCCHHHHHHHHHHHHHH
T ss_pred             chHhhcCC-CcCCcEEEecchhhh-ccCC-CEEEeCH-HHHHHHHHhccccc--------ccCCCCHHHHHHHHHHHHHH
Confidence            0000 222 246899999999995 5777 8877754 44332211100110        01112222344445566554


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          405 GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       405 g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .  .+++..++..++++++.+.|+++ +++
T Consensus       312 ~--~~~~~~~~~~~~~~~l~~~L~~~-g~~  338 (427)
T 2w8t_A          312 M--TAHEKRERLWSNARALHGGLKAM-GFR  338 (427)
T ss_dssp             T--SCHHHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred             h--cCHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            2  24677888899999999999876 544

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.84  E-value=2.2e-19  Score=178.97  Aligned_cols=233  Identities=17%  Similarity=0.148  Sum_probs=161.4

Q ss_pred             hhHHHHHHHHHHHH-HHHhCCCCCCCCCccceeEcCChHHHHHHHHHHH-HHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675          167 QSVARFEAEVIAMT-AALLGNKEKASGGQVCGNMTSGGTESILLAVKSS-RDYMRNKRGITRPEMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       167 ~~~~~~e~~~~~~~-a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~-~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~  244 (438)
                      |...++|+    .+ ++++|.. ..    +  ++|+|||+|+.+++.++ .     ++|   |+|+++.++|+++..++.
T Consensus        36 ~~~~~l~~----~~~a~~~g~~-~~----~--v~~~sgt~al~~al~~l~~-----~~G---d~Vi~~~~~~~~~~~~~~   96 (377)
T 3ju7_A           36 PINQRFEQ----TIMSGFFQNR-GA----V--TTVANATLGLMAAIQLKKR-----KKG---KYALMPSFTFPATPLAAI   96 (377)
T ss_dssp             HHHHHHHH----HHHHHTSTTC-SE----E--EEESCHHHHHHHHHHHHSC-----TTC---CEEEEESSSCTHHHHHHH
T ss_pred             HHHHHHHH----HHHHHHhCCC-Ce----E--EEeCCHHHHHHHHHHHcCC-----CCc---CEEEECCCCcHHHHHHHH
Confidence            44554544    57 8888832 22    3  89999999999999886 3     377   999999999999999999


Q ss_pred             hcCcEEEEeeCCC-CCccCHHHHHHhh-ccC--cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          245 YFNIKLWRVPVDK-EFRADVKAIKKYI-NRN--TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       245 ~~Gi~v~~v~~~~-~~~~d~~~Le~~I-~~~--t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      ..|++++.+|+++ ++.+|++++++++ +++  |++|+   +++++|.+.|+++|.++|+ +|+++|+|++++.+...  
T Consensus        97 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~--  170 (377)
T 3ju7_A           97 WCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMN--  170 (377)
T ss_dssp             HTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEE--
T ss_pred             HcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeE--
Confidence            9999999999984 8899999999998 667  88887   5667999999999999999 99999999998633221  


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc-ccCCCccCCCCccCCCCCchHHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                        .+.   +.......++++++++||++.+ ...|+++++++++.+....... .+... + .....|.+.+..-..++.
T Consensus       171 --~~~---~~g~~~~d~~~~S~~~~K~l~~-g~gG~~~~~~~~l~~~~~~~~~~g~~~~-~-~~~~~g~~~~~~~~~aa~  242 (377)
T 3ju7_A          171 --GGM---HYGQDFSGMIIYSFHATKPFGI-GEGGLIYSKNEEDIQRIKRMGNFGFDTN-R-ECTMMGFNCKMSEYAAAI  242 (377)
T ss_dssp             --TTE---ETTTTCSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHTBTTBCTT-S-CBCSSCCBCCCCHHHHHH
T ss_pred             --CCE---eccCCCCcEEEEECCCCCcCCC-CCcEEEEECCHHHHHHHHHHHhcCCCCC-C-ceeeccccCCCCHHHHHH
Confidence              000   0100112357777888999655 4567777777665433211111 11100 1 112223333222112333


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ++  .+.+.+.+..++..++++++.+.|+++++++
T Consensus       243 ~~--~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~  275 (377)
T 3ju7_A          243 GI--ATMKKWDDKLKERTRISEWYKQLLQSNGLMK  275 (377)
T ss_dssp             HH--HHHHTHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            33  3346778889999999999999999887653

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.84  E-value=4.5e-20  Score=184.17  Aligned_cols=227  Identities=13%  Similarity=0.062  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcE
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK  249 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~  249 (438)
                      .+...++++++++++|.+. .       +++++||+|+..+++++.     ++|   ++|+++.+.|+++..+++..|.+
T Consensus        87 ~~~~~~l~~~la~~~~~~~-~-------i~~~sGt~a~~~~l~~~~-----~~g---d~v~~~~~~~~~~~~~~~~~g~~  150 (399)
T 3tqx_A           87 QTIHKELEKDISEFLGTDD-T-------ILYSSCFDANGGLFETLL-----GPE---DAIISDELNHASIIDGIRLCKAQ  150 (399)
T ss_dssp             BHHHHHHHHHHHHHHTCSE-E-------EEESCHHHHHHTTHHHHC-----CTT---CEEEEETTCCHHHHHHHHSCCSE
T ss_pred             chHHHHHHHHHHHHHCCCc-E-------EEECchHHHHHHHHHHhc-----CCC---CEEEECCcccHHHHHHHHHcCCc
Confidence            3456677788999999863 2       566677999999888765     366   89999999999999999999999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          250 LWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      ++.+|.     +|++++++++++      ++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..+   ..
T Consensus       151 ~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~---~~  222 (399)
T 3tqx_A          151 RYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIG---EN  222 (399)
T ss_dssp             EEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSS---TT
T ss_pred             eeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccC---CC
Confidence            999986     478899999876      8999999999999999999999999999999999999999632221   11


Q ss_pred             CCCCCCCccC--CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675          324 GYPIPPFDFS--VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       324 g~~~p~~~~~--~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                      +.  +.....  ..+.|+++.++||++.++.| |+++.++ ++.+........|.        ..++-+...++++.+++
T Consensus       223 ~~--~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l  290 (399)
T 3tqx_A          223 GR--GTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHK-EIIEWLRNRSRPYL--------FSNTVAPVIVATSLKVL  290 (399)
T ss_dssp             SC--CHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECH-HHHHHHHHHCHHHH--------SSCCCCHHHHHHHHHHH
T ss_pred             CC--chHHhhCCCCCCcEEEecchHhcccCce-EEEEcCH-HHHHHHHHhCccee--------ccCCCcHHHHHHHHHHH
Confidence            10  001111  23569999999999655777 8876654 33322111111110        01111112234555555


Q ss_pred             HHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          402 MSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +.+. ++.++..++..++++++.+.|+++ |++
T Consensus       291 ~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~  321 (399)
T 3tqx_A          291 ELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQ  321 (399)
T ss_dssp             HHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             HHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            5443 567888899999999999999876 444

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.83  E-value=1.1e-19  Score=182.13  Aligned_cols=239  Identities=17%  Similarity=0.077  Sum_probs=167.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      ..++..++++++.+++.+.+|.  ++++    +  ++|+|||+|+.++++++..     +|   ++|+++.++|.++..+
T Consensus        73 ~~~~~~~l~~~la~~~~~~~g~~~~~~~----v--~~t~g~t~a~~~~~~~~~~-----~g---d~vl~~~p~~~~~~~~  138 (407)
T 2zc0_A           73 PANGIPELREELAAFLKKYDHLEVSPEN----I--VITIGGTGALDLLGRVLID-----PG---DVVITENPSYINTLLA  138 (407)
T ss_dssp             CTTCCHHHHHHHHHHHHHHSCCCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCcce----E--EEecCHHHHHHHHHHHhcC-----CC---CEEEEeCCChHHHHHH
Confidence            3445678888888888777784  3443    5  8999999999999999852     66   8999999999999999


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhc----c--CcEEE-EEecCCCCCccccCHH---HHHHHHHHcCCeEEEeccc
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYIN----R--NTVLI-VGSAPGFPHGIIDPIQ---ELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~----~--~t~~v-v~~~~~~~tG~iddi~---~I~~la~~~~i~lhVD~a~  312 (438)
                      ++..|++++.+|+++++ +|+++|+++++    +  ++++| ++++++||+|.+.|.+   +|+++|++||+++|+|++|
T Consensus       139 ~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~  217 (407)
T 2zc0_A          139 FEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAY  217 (407)
T ss_dssp             HHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCC
Confidence            99999999999997765 99999999998    6  78887 5789999999999876   9999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          313 GGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      +++...     |...+++ .+...+.+++..+++|++..+..+|+++.+ +++..........+.           ....
T Consensus       218 ~~~~~~-----~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~-----------~~~~  280 (407)
T 2zc0_A          218 NFMRYE-----GGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAE-GEILKKVLMQKQPID-----------FCAP  280 (407)
T ss_dssp             TTSBSS-----CSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECC-HHHHHHHHHHHTTTT-----------SSSC
T ss_pred             cccccC-----CCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecC-HHHHHHHHHHHHhhc-----------CCCC
Confidence            876531     1101111 122224457778889995522348988775 444332111111110           0111


Q ss_pred             ch-HHHHHHHHHHHc-H-HHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          392 GL-IAGAWAALMSLG-Q-EGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       392 ~~-ia~~~aal~~~g-~-~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      .. .+++.++++... . +.+++..++..++++++.+.|++ .|++++
T Consensus       281 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  328 (407)
T 2zc0_A          281 AISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEF  328 (407)
T ss_dssp             HHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCB
T ss_pred             HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            11 222333332211 2 44667778888899999999987 576654

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.83  E-value=1.4e-19  Score=182.54  Aligned_cols=211  Identities=12%  Similarity=0.069  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~Gi  248 (438)
                      .+++++.+++++|.+.      .  ++++||++|+.++++++.     ++|   |+|+++.+.|.+....+    +.+|+
T Consensus        84 ~~~le~~lA~l~g~~~------~--i~~ssGt~Ai~~al~~l~-----~~G---d~Vi~~~~~y~~~~~~~~~~l~~~G~  147 (415)
T 2fq6_A           84 HFSLQQAMCELEGGAG------C--VLFPCGAAAVANSILAFI-----EQG---DHVLMTNTAYEPSQDFCSKILSKLGV  147 (415)
T ss_dssp             HHHHHHHHHHHHTCSE------E--EEESSHHHHHHHHHHTTC-----CTT---CEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             HHHHHHHHHHHhCCCe------E--EEeCCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            3445557889999752      2  677899999999998764     367   89999999998876554    45699


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      +++.++.+     |+++++++|+++|++|++++|+||+|.+.|+++|+++|++  +|+++|+|++++.+..         
T Consensus       148 ~v~~v~~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~---------  213 (415)
T 2fq6_A          148 TTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL---------  213 (415)
T ss_dssp             EEEEECTT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS---------
T ss_pred             EEEEECCC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc---------
Confidence            99999865     8999999999999999999999999999999999999999  9999999999874321         


Q ss_pred             CCCCccCCCCccEEEeCCCCCCCCCCC---cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675          327 IPPFDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS  403 (438)
Q Consensus       327 ~p~~~~~~~gvdsis~s~hK~~~~p~g---~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~  403 (438)
                      ..++   ..|+|+++.|+||++ +|.|   .|+++.+++ +........ ..          .|.....  ..+|..++ 
T Consensus       214 ~~p~---~~g~Div~~S~sK~l-g~~g~~~~G~l~~~~~-~~~~l~~~~-~~----------~G~~~~~--~~a~~~~~-  274 (415)
T 2fq6_A          214 FKAL---DFGIDVSIQAATKYL-VGHSDAMIGTAVCNAR-CWEQLRENA-YL----------MGQMVDA--DTAYITSR-  274 (415)
T ss_dssp             SCGG---GGTCSEEEEETTTTT-TCSSSCCCEEEEECTT-THHHHHHHH-HH----------TTCCCCH--HHHHHHHH-
T ss_pred             CCcc---ccCCeEEEEeCcccc-CCCCCceEEEEEeCHH-HHHHHHHHH-Hh----------cCCCCCH--HHHHHHHh-
Confidence            1123   247899999999995 5544   687776643 332211110 00          1111111  24455443 


Q ss_pred             HcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          404 LGQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       404 ~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                       +.+.+..+.++..++++.+++.|++.|.+
T Consensus       275 -~l~~l~~r~~~~~~n~~~l~~~L~~~~~v  303 (415)
T 2fq6_A          275 -GLRTLGVRLRQHHESSLKVAEWLAEHPQV  303 (415)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence             34566777788888899999999887654

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.83  E-value=2.5e-19  Score=174.69  Aligned_cols=158  Identities=19%  Similarity=0.147  Sum_probs=129.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~Gi~v  250 (438)
                      ++++.+++++|.+ ..       +++++||+|+.++++++.     ++|   ++|+++.+.|.++...+    +..|+++
T Consensus         2 ~l~~~la~~~g~~-~~-------i~~~sG~~a~~~~~~~~~-----~~g---~~v~~~~~~~~~~~~~~~~~~~~~g~~~   65 (331)
T 1pff_A            2 ALEGKIAKLEHAE-AC-------AATASGMGAIAASVWTFL-----KAG---DHLISDDCLYGCTHALFEHQLRKFGVEV   65 (331)
T ss_dssp             HHHHHHHHHHTCS-EE-------EEESSHHHHHHHHHHHHC-----CTT---CEEEEESCCCHHHHHHHHTHHHHTTCEE
T ss_pred             hHHHHHHHHhCCC-eE-------EEeCChHHHHHHHHHHhc-----CCC---CEEEEcCCCcchHHHHHHHHHHhcCCEE
Confidence            4567899999987 32       566667999999999874     366   89999999999987765    4579999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH-cCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS-HGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~-~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      +.+|.     .|+++++++++++|++|++++|+||+|.+.|+++|.++|++ +|+++++|++|+.+..+        . +
T Consensus        66 ~~~~~-----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~--------~-~  131 (331)
T 1pff_A           66 DFIDM-----AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT--------N-P  131 (331)
T ss_dssp             EEECT-----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC--------C-G
T ss_pred             EEeCC-----CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccC--------C-h
Confidence            99986     48999999999999999999999999999999999999999 99999999999865541        1 2


Q ss_pred             CccCCCCccEEEeCCCCCCCCCCC--cEEEEEeccccc
Q 013675          330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIR  365 (438)
Q Consensus       330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~  365 (438)
                      +   ..++|+++.++||++.+|.+  +|+++.+++++.
T Consensus       132 ~---~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~  166 (331)
T 1pff_A          132 L---DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIA  166 (331)
T ss_dssp             G---GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHH
T ss_pred             h---hcCCcEEEEECccccCCCCCceEEEEEeCcHHHH
Confidence            2   24689999999999777776  788877753443

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.83  E-value=1.1e-19  Score=182.58  Aligned_cols=236  Identities=13%  Similarity=0.062  Sum_probs=170.2

Q ss_pred             hhHHHHHHHHHHHHHHHhCCC--C-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          167 QSVARFEAEVIAMTAALLGNK--E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~--~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      ++..++++.+.+++.+.+|.+  + ++    +  ++|+|+|+|+.++++++.     .+|   ++|+++.+.|.++...+
T Consensus        85 ~g~~~lr~~ia~~~~~~~g~~~~~~~~----v--~~t~G~~~al~~~~~~l~-----~~g---d~Vl~~~p~y~~~~~~~  150 (404)
T 2o1b_A           85 HGKEAFKQAIVDFYQRQYNVTLDKEDE----V--CILYGTKNGLVAVPTCVI-----NPG---DYVLLPDPGYTDYLAGV  150 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCTTTS----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEEESCCSSHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCccc----E--EEcCCcHHHHHHHHHHhc-----CCC---CEEEEcCCCchhHHHHH
Confidence            456778888888888888975  2 33    5  899999999999999875     256   89999999999999999


Q ss_pred             hhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          244 QYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      +..|.+++.+|+++ ++.+|+++|++++++++++|++++|+||||.+.|   +++|+++|+++|+++++|++|+++... 
T Consensus       151 ~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-  229 (404)
T 2o1b_A          151 LLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFD-  229 (404)
T ss_dssp             HHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSS-
T ss_pred             HHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccC-
Confidence            99999999999986 5568999999999888999999999999999976   788999999999999999999875431 


Q ss_pred             hhhcCCCCCCCccC-CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          320 AKKLGYPIPPFDFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       320 ~~~~g~~~p~~~~~-~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                          |...+..... ..+.++++.++||++. .+..+|+++.+ +++.+........+..          +-+....+++
T Consensus       230 ----g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~----------~~~~~~~~a~  294 (404)
T 2o1b_A          230 ----AKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN-KDMIQALKKYQTHTNA----------GMFGALQDAA  294 (404)
T ss_dssp             ----SCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHHHHHCC----------CCCHHHHHHH
T ss_pred             ----CCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC-HHHHHHHHHHHhhccC----------CCCHHHHHHH
Confidence                1101111211 1245788999999953 22347987764 4443321111111110          1111112233


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+++.. +.+.+++..++..++++++.+.|+++ +++
T Consensus       295 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  329 (404)
T 2o1b_A          295 IYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKA-DLP  329 (404)
T ss_dssp             HHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhc-CCe
Confidence            333432 35677888888999999999999876 554

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.83  E-value=6.2e-19  Score=178.17  Aligned_cols=226  Identities=17%  Similarity=0.134  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.+  +    +  ++|+|||+|+.++++++.      +|   ++|+++.++|+++..++...|++++.+
T Consensus        55 ~~l~~~la~~~~~~--~----v--~~~~ggt~al~~~l~~l~------~g---d~Vlv~~~~~~~~~~~~~~~G~~~~~v  117 (424)
T 2po3_A           55 REFEERVAGLAGVR--H----A--VATCNATAGLQLLAHAAG------LT---GEVIMPSMTFAATPHALRWIGLTPVFA  117 (424)
T ss_dssp             HHHHHHHHHHHTSS--E----E--EEESCHHHHHHHHHHHHT------CC---SEEEEESSSCTHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhCCC--e----E--EEeCCHHHHHHHHHHHcC------CC---CEEEECCCccHHHHHHHHHcCCEEEEE
Confidence            34555678888874  2    4  899999999999999874      56   899999999999999999999999999


Q ss_pred             eCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc-chhhhhhhhcCCCCCCCc
Q 013675          254 PVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG-GFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       254 ~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g-g~~~pf~~~~g~~~p~~~  331 (438)
                      |+++ ++.+|+++|+++++++|++|++++   |+|.+.++++|.++|+++|+++++|++|+ |+...     +.   ++.
T Consensus       118 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~-----~~---~~~  186 (424)
T 2po3_A          118 DIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVD-----GR---PAG  186 (424)
T ss_dssp             CBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET-----TE---ETT
T ss_pred             ecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeEC-----Ce---ecc
Confidence            9986 788999999999998999988865   69999999999999999999999999998 44321     10   111


Q ss_pred             cCCCCccEEEeCCC--CCCCCCCCcEEEEEecccccccchhc-ccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          332 FSVQGVTSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVA-VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       332 ~~~~gvdsis~s~h--K~~~~p~g~g~l~~r~~~~~~~~~~~-~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                         ...|+++.++|  |+ ++|..+|+++.+++++.+..... ...+.. .+ .....|........++++++.  ..++
T Consensus       187 ---~~~di~~~S~sk~K~-l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~-~~-~~~~~g~~~~~~~~~aa~~l~--~~~~  258 (424)
T 2po3_A          187 ---SLGDAEVFSFHATKA-VNAFEGGAVVTDDADLAARIRALHNFGFDL-PG-GSPAGGTNAKMSEAAAAMGLT--SLDA  258 (424)
T ss_dssp             ---SSSSEEEEECCTTSS-SCCSSCEEEEESCHHHHHHHHHHHBTTTTC-TT-CCTTCCCBCCCCHHHHHHHHH--HHHH
T ss_pred             ---cccCEEEEeCCCCCC-ccCCCCeEEEeCCHHHHHHHHHHHhcCccc-cc-cccccCcCCCcCHHHHHHHHH--HHHH
Confidence               01256666655  87 45566788777645543321111 111110 00 111112111111123334443  3467


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +++..++..++++++.+.|+++|++++
T Consensus       259 ~~~~~~~~~~~~~~l~~~L~~~~g~~~  285 (424)
T 2po3_A          259 FPEVIDRNRRNHAAYREHLADLPGVLV  285 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCccc
Confidence            788889999999999999998887764

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.83  E-value=9.4e-20  Score=184.09  Aligned_cols=217  Identities=13%  Similarity=0.079  Sum_probs=159.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeE---cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-CCcCcHH----------
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNM---TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYD----------  240 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~---t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-~~h~s~~----------  240 (438)
                      ++.+.+++++|.+..        ++   ++|||+|+..++.++.     ++|   |+|+++. +.|....          
T Consensus        77 ~Le~~lA~l~g~e~a--------lv~p~~~sGt~Ai~~al~all-----~pG---D~Vl~~~~~~y~~~~~~~g~~~~~~  140 (427)
T 3i16_A           77 SLDAVYARVFNTESA--------LVRPHFVNGTHALGAALFGNL-----RPG---NTMLSVCGEPYDTLHDVIGITENSN  140 (427)
T ss_dssp             HHHHHHHHHHTCSEE--------EEETTCCSHHHHHHHHHHHHC-----CTT---CEEEESSSSCCGGGHHHHTCSCCCS
T ss_pred             HHHHHHHHHhCCcce--------EEeCCCccHHHHHHHHHHHHh-----CCC---CEEEEeCCCccHHHHHHHhccccch
Confidence            344579999998643        45   8999999999998875     377   9999998 8887766          


Q ss_pred             -HHHhhcCcEEEEeeCCCCCccCHHHHHHhhc--cCcEEEEEec----CCCCCccccCHHHHHHHHHH--cCCeEEEecc
Q 013675          241 -KAAQYFNIKLWRVPVDKEFRADVKAIKKYIN--RNTVLIVGSA----PGFPHGIIDPIQELGELALS--HGTCLHVDLC  311 (438)
Q Consensus       241 -~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~--~~t~~vv~~~----~~~~tG~iddi~~I~~la~~--~~i~lhVD~a  311 (438)
                       +.++.+|++++.+|+++++.+|+++++++++  ++|++|++++    |+||+|.+.|+++|+++|++  +|++++||++
T Consensus       141 ~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a  220 (427)
T 3i16_A          141 MGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNC  220 (427)
T ss_dssp             SCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred             HHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECC
Confidence             4456679999999998899999999999999  7899999999    99999999999999999999  9999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC--CCcEEEEEecccccccchh-cccccCCCccCCCCccCC
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFV-AVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~~~~-~~~~~~g~~~~~~~~~gs  388 (438)
                      |+.+...           .+....|+|+++.++||++.++  ...|+++.+ +++.+.... ......|.          
T Consensus       221 ~~~~~~~-----------~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~----------  278 (427)
T 3i16_A          221 YGEFMDT-----------KEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGG----------  278 (427)
T ss_dssp             TTTTSSS-----------SCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGG----------
T ss_pred             Ccccccc-----------CCccccCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccCc----------
Confidence            9755421           1122347899999999995431  334877665 444332211 11100110          


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      ..+.....+|.+++  |......+.++..+++.++++.|++++
T Consensus       279 ~~~~~~~~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~g  319 (427)
T 3i16_A          279 ECGSTFGVVRSMYQ--GLFLAPHISMEALKGAILCSRIMELAG  319 (427)
T ss_dssp             GCCCCTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            00110112455553  345567888899999999999999874

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.83  E-value=2.4e-19  Score=181.25  Aligned_cols=232  Identities=13%  Similarity=0.126  Sum_probs=164.7

Q ss_pred             hHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          168 SVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      +..++++.+.+++.+.+|    .++++    +  ++|+|+|+++.+++++++.     +|   ++|+++.++|.++...+
T Consensus        84 g~~~lr~~la~~~~~~~g~~~~~~~~~----i--~~~~G~~~ai~~~~~~~~~-----~g---d~Vl~~~p~y~~~~~~~  149 (428)
T 1iay_A           84 GLPEFRKAIAKFMEKTRGGRVRFDPER----V--VMAGGATGANETIIFCLAD-----PG---DAFLVPSPYYPAFNRDL  149 (428)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCCCTTS----C--EEEEHHHHHHHHHHHHHCC-----TT---CEEEEESSCCTTHHHHT
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCCChhh----E--EEccChHHHHHHHHHHhCC-----CC---CeEEEccCCCcchHHHH
Confidence            466788888888877777    44544    6  8999999999999998763     67   89999999999988755


Q ss_pred             -hhcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecc
Q 013675          244 -QYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       244 -~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a  311 (438)
                       ...|++++.+|.++  ++.+|++++++++++      ++++|++++|+||||.+.|   +++|+++|+++|+++++|++
T Consensus       150 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea  229 (428)
T 1iay_A          150 RWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEI  229 (428)
T ss_dssp             TTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECT
T ss_pred             HHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecc
Confidence             46799999999874  567999999999974      6899999999999999999   99999999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCC-ccC------CCCcc--EEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCcc
Q 013675          312 LGGFVLPFAKKLGYPIPPF-DFS------VQGVT--SISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~-~~~------~~gvd--sis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      |+++...     +...+++ ...      ..+.|  ++..++||++ +.+|  +|+++..++++.+........|.    
T Consensus       230 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g~~Glr~G~~~~~~~~~~~~~~~~~~~~~----  299 (428)
T 1iay_A          230 YAATVFD-----TPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFNDDVVNCARKMSSFGL----  299 (428)
T ss_dssp             TGGGCCS-----SSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEESCHHHHHHHHHHHTTSC----
T ss_pred             ccccccC-----CCCccCHHHhccccccccCCCCcEEEEecchhhc-CCCCceEEEEEeCCHHHHHHHHHHHhccc----
Confidence            9875431     0000011 111      11246  7888999994 4344  69988755554432211111110    


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHc-----HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLG-----QEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                              -+   ..++.++...+.     .+.+++..++..++++++.+.|+++ ++++
T Consensus       300 --------~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  347 (428)
T 1iay_A          300 --------VS---TQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKC  347 (428)
T ss_dssp             --------CC---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             --------CC---HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcc
Confidence                    01   113333333332     2356778888889999999999887 5543

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.83  E-value=1.2e-19  Score=181.60  Aligned_cols=233  Identities=17%  Similarity=0.176  Sum_probs=166.7

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH---HHHH
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY---DKAA  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~---~~a~  243 (438)
                      +....+|+.+++++++++|.++..       +++++||+|+.++++++.     .+|   ++|+++.++|.++   ..++
T Consensus        65 ~~~~~~e~~ar~~la~~~g~~~~~-------i~~~sGt~a~~~~~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~  129 (407)
T 2dkj_A           65 EVIDRVESLAIERAKALFGAAWAN-------VQPHSGSQANMAVYMALM-----EPG---DTLMGMDLAAGGHLTHGSRV  129 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHC-----CTT---CEEEEECGGGTCCGGGTCTT
T ss_pred             hHHHHHHHHHHHHHHHHhCCCcce-------EEecchHHHHHHHHHHhc-----CCC---CEEEEecccccCccchHHHH
Confidence            333456666778999999997653       455667889999999874     366   8999999999888   4566


Q ss_pred             hhcCc--EEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          244 QYFNI--KLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       244 ~~~Gi--~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      +..|.  +.+.+++++ ++.+|++++++++++ +|++|+++.|+||  .+.|+++|.++|++||+++++|++|+.+..+ 
T Consensus       130 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-  206 (407)
T 2dkj_A          130 NFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVA-  206 (407)
T ss_dssp             SHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHH-
T ss_pred             HhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccc-
Confidence            66676  444455453 788999999999985 8999998888886  7889999999999999999999999874442 


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                         .|. .  .. ....+|+++.++||++.+|.+ |+++.+++++.+........|.         .++.....++++.+
T Consensus       207 ---~~~-~--~~-~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~a~~~  269 (407)
T 2dkj_A          207 ---AGL-H--PN-PLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFPGI---------QGGPLEHVIAGKAV  269 (407)
T ss_dssp             ---TTC-S--CC-CTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTTTT---------CSSCCHHHHHHHHH
T ss_pred             ---cCc-c--CC-ccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhcccc---------cCCCcHHHHHHHHH
Confidence               111 0  01 012379999999998777776 8888875554432211111111         11111122445667


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++..+..+++++..++..++++++.+.|+++ |+++
T Consensus       270 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  304 (407)
T 2dkj_A          270 AFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRI  304 (407)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-Ccee
Confidence            7766555788999999999999999999887 6543

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.83  E-value=8.8e-19  Score=174.92  Aligned_cols=233  Identities=16%  Similarity=0.155  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHH--HHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYM--RNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~--~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      ..++++.+++++|.+ .     .  +++++||+|+.+++++++...  ..++|   ++|+++.++|.++..+++..|+++
T Consensus        36 ~~~l~~~la~~~~~~-~-----~--i~~~sGt~a~~~al~~~~~~~~~~~~~g---~~Vi~~~~~~~~~~~~~~~~g~~~  104 (390)
T 3b8x_A           36 VKQYETQFAKTFGSK-Y-----A--VMVSSGSTANLLMIAALFFTKKPRLKKG---DEIIVPAVSWSTTYYPLQQYGLRV  104 (390)
T ss_dssp             HHHHHHHHHHHHTCS-E-----E--EEESCHHHHHHHHHHHTTSSSSCSCCTT---CEEEEESSSCHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHCCC-c-----E--EEECCHHHHHHHHHHHHHhhhhcCCCCc---CEEEECCCCcHHHHHHHHHcCCEE
Confidence            334555788888886 2     3  789999999999999873100  01245   899999999999999999999999


Q ss_pred             EEeeCCCC-CccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          251 WRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       251 ~~v~~~~~-~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      +.+|++++ +.+|+++|+++|+++|++|++++   ++|...|+++|.++|+++|+++|+|++++.+..+           
T Consensus       105 ~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-----------  170 (390)
T 3b8x_A          105 KFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATF-----------  170 (390)
T ss_dssp             EEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-----------
T ss_pred             EEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-----------
Confidence            99999874 89999999999999999998874   5789999999999999999999999999744332           


Q ss_pred             CccCCCCc--cE--EEe-CCCCCCCCCCCcEEEEEecccccccc-hhcccccCCC--------------cc---CCCCcc
Q 013675          330 FDFSVQGV--TS--ISV-DVHKYGLAPKGTSVVLYRNREIRKHQ-FVAVTEWSGG--------------LY---VSPTVA  386 (438)
Q Consensus       330 ~~~~~~gv--ds--is~-s~hK~~~~p~g~g~l~~r~~~~~~~~-~~~~~~~~g~--------------~~---~~~~~~  386 (438)
                       +....|+  |.  ++. ++||+ .+|.| |+++.+++++.+.. ......|.+.              .+   ......
T Consensus       171 -~~~~~g~~~~~~~~s~~~~k~~-~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (390)
T 3b8x_A          171 -NNKCAGTFGLMGTFSSFYSNHI-ATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLP  247 (390)
T ss_dssp             -TTEETTSSSSEEEEECCTTSSS-CSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSC
T ss_pred             -CCcccccccceEEEEccCCCCC-ccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceecc
Confidence             1111222  33  333 34554 56666 88777764443211 1111111000              00   000112


Q ss_pred             CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      |.+.+..-..+++++..  .+.+++..++..++++++.+.|+++|++++
T Consensus       248 g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~  294 (390)
T 3b8x_A          248 GYNVRPLEMSGAIGIEQ--LKKLPRFISVRRKNAEYFLDKFKDHPYLDV  294 (390)
T ss_dssp             CCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTCSSEEE
T ss_pred             ccccCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence            33333332344455443  367788999999999999999999888764

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.82  E-value=2e-19  Score=179.96  Aligned_cols=232  Identities=16%  Similarity=0.152  Sum_probs=165.7

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH-H--H
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK-A--A  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~-a--~  243 (438)
                      +...++++++++++++++|.++..       +++++||+|+.++++++.     ++|   ++|+++.+.|.++.. .  +
T Consensus        65 ~~~~~l~~~~r~~la~~~g~~~~~-------i~~~sGt~a~~~a~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~  129 (405)
T 2vi8_A           65 EYVDIVEELARERAKQLFGAEHAN-------VQPHSGAQANMAVYFTVL-----EHG---DTVLGMNLSHGGHLTHGSPV  129 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHC-----CTT---CEEEEECGGGTCCTTTTCTT
T ss_pred             hHHHHHHHHHHHHHHHHhCCCceE-------EEecCcHHHHHHHHHHhc-----CCC---CEEEEecccccchhcccchh
Confidence            456778888999999999998543       455566999999999885     366   899999999988754 2  1


Q ss_pred             hhcCc--EEEEeeCC-CCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          244 QYFNI--KLWRVPVD-KEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       244 ~~~Gi--~v~~v~~~-~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ...|.  +++.++++ +++.+|++++++++++ +|++|+++ +++ .|...|+++|.++|++||+++|+|++|+.+..+.
T Consensus       130 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~~-~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~  207 (405)
T 2vi8_A          130 NFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA-AAA-YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA  207 (405)
T ss_dssp             SHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC-CSS-CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT
T ss_pred             hhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEe-CCC-CCccCCHHHHHHHHHHcCCEEEEEcccccccccc
Confidence            23444  88888876 4788999999999986 88888774 333 4677799999999999999999999998444321


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                          +.  .+..  ..++|+++.++||++.+|.| |+++.+ +++.+........|         ..|+.....++++.+
T Consensus       208 ----~~--~~~~--~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~~~~l~~~~~~~---------~~~~~~~~~~aa~~~  268 (405)
T 2vi8_A          208 ----GL--HPNP--VPYAHFVTTTTHKTLRGPRG-GMILCQ-EQFAKQIDKAIFPG---------IQGGPLMHVIAAKAV  268 (405)
T ss_dssp             ----TS--SCCS--TTTCSEEEEESSSTTCCCSC-EEEEEC-HHHHHHHHHHHTTT---------TCSSCCHHHHHHHHH
T ss_pred             ----Cc--CCCc--cccCCEEEEeccccCCCCCC-eEEEEc-HHHHHHHHhhhccc---------ccCCCCHHHHHHHHH
Confidence                11  1111  23578999999999767888 888776 44433211111111         112222233455566


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++..+..+++++..++..++++++.+.|+++ |+++
T Consensus       269 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  303 (405)
T 2vi8_A          269 AFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTL  303 (405)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeE
Confidence            7766555688999999999999999999887 6543

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.82  E-value=4.4e-19  Score=176.41  Aligned_cols=226  Identities=15%  Similarity=0.112  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      +...++++.+++++|.+ ..       +++++||+++..+++++.     ++|   ++|+++.+.|.++..+++..|.++
T Consensus        84 ~~~~~l~~~la~~~g~~-~~-------i~~~sGt~a~~~~~~~~~-----~~g---d~v~~~~~~~~~~~~~~~~~g~~~  147 (384)
T 1bs0_A           84 VVHQALEEELAEWLGYS-RA-------LLFISGFAANQAVIAAMM-----AKE---DRIAADRLSHASLLEAASLSPSQL  147 (384)
T ss_dssp             HHHHHHHHHHHHHHTCS-EE-------EEESCHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHHTSSSEE
T ss_pred             HHHHHHHHHHHHHhCCC-cE-------EEeCCcHHHHHHHHHHhC-----CCC---cEEEEcccccHHHHHHHHHcCCCE
Confidence            34556777888889986 32       667777999999998864     366   899999999999999999999999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccC---cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      +.+|.     .|+++++++++++   +++|++++++||+|.+.|+++|.++|++||+++++|++|+.+...   ..|...
T Consensus       148 ~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~---~~~~~~  219 (384)
T 1bs0_A          148 RRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIG---EQGRGS  219 (384)
T ss_dssp             EEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSS---GGGCCH
T ss_pred             EEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceec---CCCCch
Confidence            99984     4899999999763   889999999999999999999999999999999999999654321   001000


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                        .+....+.|+++.++||+ ++|.| |+++.+ +++.+........|...        ++.+....+++.++++.+...
T Consensus       220 --~~~~~~~~di~~~s~sK~-~~~~G-G~~~~~-~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~al~~~~~~  286 (384)
T 1bs0_A          220 --CWLQKVKPELLVVTFGKG-FGVSG-AAVLCS-STVADYLLQFARHLIYS--------TSMPPAQAQALRASLAVIRSD  286 (384)
T ss_dssp             --HHHTTCCCSEEEEESSST-TSSCC-EEEEEC-HHHHHHHHHHCHHHHSS--------BCCCHHHHHHHHHHHHHHHSH
T ss_pred             --HHhcCCCCcEEEeeccch-hhccC-cEEEeC-HHHHHHHHHhchhhhcC--------CCCCHHHHHHHHHHHHHHhcc
Confidence              011113578999999999 56877 887775 44433211111111110        011112233445566554222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      +.++..++..++++++.+.|+++ +++
T Consensus       287 ~~~~~~~~~~~~~~~l~~~L~~~-g~~  312 (384)
T 1bs0_A          287 EGDARREKLAALITRFRAGVQDL-PFT  312 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTS-SCE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence            56788889999999999999886 444

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.82  E-value=2.2e-19  Score=179.68  Aligned_cols=226  Identities=16%  Similarity=0.104  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      ....++++.+++++|.+ ..       +++++||+|+..+++++.     ++|   ++|+++.+.|.++..+++..|+++
T Consensus        90 ~~~~~l~~~la~~~g~~-~~-------i~~~sGs~a~~~~~~~~~-----~~g---d~v~~~~~~~~~~~~~~~~~g~~~  153 (401)
T 1fc4_A           90 DSHKELEQKLAAFLGME-DA-------ILYSSCFDANGGLFETLL-----GAE---DAIISDALNHASIIDGVRLCKAKR  153 (401)
T ss_dssp             HHHHHHHHHHHHHHTCS-EE-------EEESCHHHHHHTTHHHHC-----CTT---CEEEEETTCCHHHHHHHHTSCSEE
T ss_pred             HHHHHHHHHHHHHhCCC-cE-------EEeCChHHHHHHHHHHHc-----CCC---CEEEEcchhHHHHHHHHHHcCCce
Confidence            44567777899999987 33       566778999999888864     366   899999999999999999999999


Q ss_pred             EEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc-chhhhhhhhc
Q 013675          251 WRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG-GFVLPFAKKL  323 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g-g~~~pf~~~~  323 (438)
                      +.+|.     +|++++++++++      ++++|++++++||+|.+.|+++|.++|+++|+++++|++|+ ++..+    .
T Consensus       154 ~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~----~  224 (401)
T 1fc4_A          154 YRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGE----N  224 (401)
T ss_dssp             EEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSST----T
T ss_pred             EEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCC----C
Confidence            98874     489999999975      79999999999999999999999999999999999999996 55321    0


Q ss_pred             CCCCCC-CccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          324 GYPIPP-FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       324 g~~~p~-~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                      |...++ ++.. .++|+++.++||++.++.| |+++.+ +++.+........|.        ..++.+....+++.++++
T Consensus       225 g~~~~~~~~~~-~~~di~~~s~sK~~~~~~g-G~~~~~-~~~~~~l~~~~~~~~--------~~~~~~~~~~~a~~~~l~  293 (401)
T 1fc4_A          225 GRGSHEYCDVM-GRVDIITGTLGKALGGASG-GYTAAR-KEVVEWLRQRSRPYL--------FSNSLAPAIVAASIKVLE  293 (401)
T ss_dssp             SCCHHHHTTCT-TCCSEEEEESSSTTCSSSC-EEEEEC-HHHHHHHHHHCHHHH--------HSCCCCHHHHHHHHHHHH
T ss_pred             CCccHHHcCCC-cCCcEEEecchhhccCCCC-EEEEcC-HHHHHHHHHhCcCce--------eCCCCCHHHHHHHHHHHH
Confidence            100000 2222 3679999999999657776 887775 444332211111110        011111222334444554


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+.  ..++..++..++++++.+.|+++ ++++
T Consensus       294 ~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~  323 (401)
T 1fc4_A          294 MVE--AGSELRDRLWANARQFREQMSAA-GFTL  323 (401)
T ss_dssp             HHH--TCHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHh--cCHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence            432  14677888899999999999887 5543

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.82  E-value=2.2e-19  Score=180.57  Aligned_cols=210  Identities=16%  Similarity=0.131  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcCcE
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNIK  249 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~Gi~  249 (438)
                      .++++.+++++|.+ ..       +++++|++|+.++++ +.     ++|   ++|+++.+.|.+...    .++..|++
T Consensus        70 ~~l~~~la~~~g~~-~~-------i~~~sG~~ai~~~~~-l~-----~~g---d~Vl~~~~~y~~~~~~~~~~~~~~G~~  132 (403)
T 3cog_A           70 NCLEKAVAALDGAK-YC-------LAFASGLAATVTITH-LL-----KAG---DQIICMDDVYGGTNRYFRQVASEFGLK  132 (403)
T ss_dssp             HHHHHHHHHHHTCS-EE-------EEESCHHHHHHHHHT-TS-----CTT---CEEEEESSCCHHHHHHHHHTGGGGTCE
T ss_pred             HHHHHHHHHHhCCC-cE-------EEECCHHHHHHHHHH-Hh-----CCC---CEEEEeCCCcchHHHHHHHHHHHcCCE
Confidence            34555788888886 32       455566899998887 53     367   899999999988444    34678999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC-CeEEEeccccchhhhhhhhcCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG-TCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~-i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      ++.+|.+     |+++++++|+++|++|++++|+||+|.+.|+++|+++|+++| +++++|++|+.+...        . 
T Consensus       133 v~~v~~~-----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~--------~-  198 (403)
T 3cog_A          133 ISFVDCS-----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQ--------R-  198 (403)
T ss_dssp             EEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTC--------C-
T ss_pred             EEEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccC--------C-
Confidence            9999876     899999999999999999999999999999999999999999 999999999765420        1 


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                      +++   .++|+++.++||++.+|.+  +|+++.+++++.+........|..           ...  ...+|++++.+  
T Consensus       199 ~~~---~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~-----------~~~--~~~~~~~~~~l--  260 (403)
T 3cog_A          199 PLA---LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGA-----------VPS--PIDCYLCNRGL--  260 (403)
T ss_dssp             TTT---TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCC-----------CCC--HHHHHHHHHHH--
T ss_pred             ccc---cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCC-----------CCC--HHHHHHHHhhh--
Confidence            233   4789999999999777776  488887765554322111111111           111  22566655433  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      +.+..+.++..+++..+.+.|++.|.
T Consensus       261 ~~l~~r~~~~~~n~~~l~~~l~~~~~  286 (403)
T 3cog_A          261 KTLHVRMEKHFKNGMAVAQFLESNPW  286 (403)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            33444556666666666666665543

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.82  E-value=4.1e-19  Score=177.25  Aligned_cols=213  Identities=18%  Similarity=0.145  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----HhhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----~~~~Gi  248 (438)
                      ..++++.+++++|.+ +.       +++++||+|+.++++++.     ++|   ++|+++.+.|.+....    ++..|+
T Consensus        54 ~~~l~~~la~~~~~~-~~-------i~~~sGt~a~~~~~~~~~-----~~g---~~vl~~~~~~~~~~~~~~~~~~~~g~  117 (386)
T 1cs1_A           54 RDVVQRALAELEGGA-GA-------VLTNTGMSAIHLVTTVFL-----KPG---DLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_dssp             HHHHHHHHHHHHTCS-EE-------EEESSHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHhCCC-cE-------EEeCCHHHHHHHHHHHHh-----CCC---CEEEEecCCcHhHHHHHHHHHHhcCC
Confidence            445666788889886 33       444566999999999874     256   8999999999985443    467799


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +++.+|.+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++++..+        . 
T Consensus       118 ~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~--------~-  183 (386)
T 1cs1_A          118 RVLFVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ--------N-  183 (386)
T ss_dssp             EEEEECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC--------C-
T ss_pred             EEEEeCCC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC--------C-
Confidence            99999874     899999999999999999999999999999999999999999999999999876542        1 


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCCc--EEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKGT--SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ  406 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g~--g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~  406 (438)
                      ++   ..++|+++.++||++.+|.+.  |+++.+++++.+........|.+           ..  ...++++++..+  
T Consensus       184 ~~---~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~-----------~~--~~~~~~~~~~~l--  245 (386)
T 1cs1_A          184 PL---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV-----------TG--GAFDSYLLLRGL--  245 (386)
T ss_dssp             GG---GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTC-----------BC--CHHHHHHHHHHH--
T ss_pred             cc---ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCC-----------CC--CHHHHHHHHhcc--
Confidence            12   246899999999997777763  88888764443321111111111           00  122445544332  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          407 EGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      +.+.+..++..++++++.+.|++++.+
T Consensus       246 ~~~~~~~~~~~~~~~~l~~~l~~~~~l  272 (386)
T 1cs1_A          246 RTLVPRMELAQRNAQAIVKYLQTQPLV  272 (386)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            345566677777888888888776554

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.82  E-value=1.4e-18  Score=179.63  Aligned_cols=245  Identities=11%  Similarity=0.108  Sum_probs=172.8

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ...|...++..++++++.+++.+..|.+  +++    +  ++|+|+++++.+++.++..    .+|   ++|+++.+.|+
T Consensus       127 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~l~~----~~g---d~Vlv~~p~y~  193 (500)
T 3tcm_A          127 TGAYSHSQGIHGLRDAIASGIASRDGFPANADD----I--FLTDGASPGVHLMMQLLIR----NEK---DGILVPIPQYP  193 (500)
T ss_dssp             SSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGG----E--EEESSSHHHHHHHHHHHCC----STT---EEEEEEESCCT
T ss_pred             CCCcCCCcChHHHHHHHHHHHHhhcCCCCCccc----E--EEcCCHHHHHHHHHHHHcC----CCC---CEEEEeCCCcH
Confidence            4456667788889999999998888854  443    6  8999999999999998741    256   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      ++..+++..|++++.+++++  ++.+|+++|++++++      ++++|++++|+||||.+.+   +++|+++|++||+++
T Consensus       194 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~l  273 (500)
T 3tcm_A          194 LYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVL  273 (500)
T ss_dssp             HHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred             hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999986  469999999999987      7899999999999999966   667777799999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCCc-----c--CCCCcc-EEEeCCCCCCCCC--CCcEEEEEe--cccccccchhcccc
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPFD-----F--SVQGVT-SISVDVHKYGLAP--KGTSVVLYR--NREIRKHQFVAVTE  374 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~~-----~--~~~gvd-sis~s~hK~~~~p--~g~g~l~~r--~~~~~~~~~~~~~~  374 (438)
                      ++|++|+.+...  .  +...+++.     +  ....+. ++..|++|.++++  ..+|+++..  ++++..........
T Consensus       274 i~Deay~~~~~~--~--~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~  349 (500)
T 3tcm_A          274 LADEVYQENIYV--D--NKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASV  349 (500)
T ss_dssp             EEECTTTTCBCC--T--TCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHT
T ss_pred             EEecCccccccC--C--CCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhc
Confidence            999999875431  0  00011110     1  022233 4556889985343  447888773  44444322111110


Q ss_pred             cCCCccCCCCccCCCCCchHHHHHHHHHHH------------cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSL------------GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~------------g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +              ......++.++...+            -.+...++.++..++++++.+.|+++||+++
T Consensus       350 ~--------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~  408 (500)
T 3tcm_A          350 N--------------LCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITC  408 (500)
T ss_dssp             T--------------CCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             c--------------cCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            0              001111222222222            1234567778888999999999999988765

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.82  E-value=4.4e-19  Score=180.84  Aligned_cols=242  Identities=13%  Similarity=0.067  Sum_probs=168.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      |...++..++++.+.+++.+.+|. ++++    +  ++|+|+++|+.++++++.+     +|   ++|+++.++|.++..
T Consensus       114 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~----v--~~t~G~~~al~~~~~~l~~-----~G---d~Vlv~~p~y~~~~~  179 (448)
T 3aow_A          114 YGTTKGFTPLRETLMKWLGKRYGISQDND----I--MITSGSQQALDLIGRVFLN-----PG---DIVVVEAPTYLAALQ  179 (448)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCTTSE----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEEESCCHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCcCChhh----E--EEeCcHHHHHHHHHHHHcC-----CC---CEEEEeCCChHHHHH
Confidence            333456677888888887777798 4443    6  8999999999999999753     67   899999999999999


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhc----c--CcEEE-EEecCCCCCccccC---HHHHHHHHHHcCCeEEEecc
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYIN----R--NTVLI-VGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~----~--~t~~v-v~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a  311 (438)
                      +++..|++++.+|+++++ +|+++|+++++    +  ++++| ++++++||||.+.+   +++|.++|++||+++++|++
T Consensus       180 ~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~  258 (448)
T 3aow_A          180 AFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDP  258 (448)
T ss_dssp             HHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred             HHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence            999999999999998765 99999999998    6  78887 57899999999977   56899999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675          312 LGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~  390 (438)
                      |+.+...     |...+++ .+...+.+++..+++|++..+..+|+++.+ +++.+........+..         + -+
T Consensus       259 y~~~~~~-----g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~-~~l~~~l~~~~~~~~~---------~-~~  322 (448)
T 3aow_A          259 YGELRYS-----GNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGD-PGIIRKMEIAKQSTDL---------C-TN  322 (448)
T ss_dssp             CTTCBCS-----SCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEEC-HHHHHHHHHHHHHHHS---------S-CC
T ss_pred             CccccCC-----CCCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeC-HHHHHHHHHHHHHhcC---------C-CC
Confidence            9876431     1111122 222345678888899995422237998876 4443321111111000         0 01


Q ss_pred             CchHHHHHHHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhc-CC-Cccc
Q 013675          391 GGLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGLVL-FP-MFLP  435 (438)
Q Consensus       391 ~~~ia~~~aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~-~~-g~~~  435 (438)
                      ....+++..+++..+ .+.+++..++..++++++.+.|++ +| ++++
T Consensus       323 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~  370 (448)
T 3aow_A          323 VFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKW  370 (448)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            111222333332211 344667777777889999999986 56 5653

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.82  E-value=1.7e-19  Score=182.36  Aligned_cols=233  Identities=14%  Similarity=0.096  Sum_probs=165.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhCC---CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGN---KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~---~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      ..++..++++++.+++.+.+|.   ++++    +  ++|+|+++++.++++++.     .+|   ++|+++.++|.++..
T Consensus        83 ~~~g~~~lr~~la~~l~~~~g~~~~~~~~----v--~~t~G~~~al~~~~~~l~-----~~g---d~Vl~~~p~y~~~~~  148 (425)
T 1vp4_A           83 TTEGDPVLKQQILKLLERMYGITGLDEDN----L--IFTVGSQQALDLIGKLFL-----DDE---SYCVLDDPAYLGAIN  148 (425)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCCCSCCGGG----E--EEEEHHHHHHHHHHHHHC-----CTT---CEEEEEESCCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhccCCCCCCccc----E--EEeccHHHHHHHHHHHhC-----CCC---CEEEEeCCCcHHHHH
Confidence            3455677888888888777784   4444    5  899999999999999875     366   899999999999999


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhhcc--------CcEEE-EEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINR--------NTVLI-VGSAPGFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~--------~t~~v-v~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      .++..|++++.+|+++++ +|+++|++++++        ++++| ++++|+||||.+.|   +++|+++|+++|+++++|
T Consensus       149 ~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D  227 (425)
T 1vp4_A          149 AFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVED  227 (425)
T ss_dssp             HHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence            999999999999997764 999999999976        78887 57999999999976   578999999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675          310 LCLGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs  388 (438)
                      ++|+++...     |...+++ .+...+.+++..+++|++..+..+|+++.+ +++.+........+..          +
T Consensus       228 e~~~~~~~~-----g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~----------~  291 (425)
T 1vp4_A          228 DPYGALRYE-----GETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGS-KEFIRKIVQAKQSADL----------C  291 (425)
T ss_dssp             CSSTTCBCS-----SCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECC-HHHHHHHHHHHHHHHS----------S
T ss_pred             CCCccccCC-----CCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeC-HHHHHHHHHHhhhhcC----------C
Confidence            999876431     1101111 112234578888999995422337988876 4443321111111100          0


Q ss_pred             CCCchHHHHHHHHHHHc----HHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 013675          389 RPGGLIAGAWAALMSLG----QEGYLENTKAIMEVSESIQKGLVL-FP  431 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g----~~g~~~~~~~~~~~a~~l~~~L~~-~~  431 (438)
                      -+   ..+++++...+.    .+.+++..++..++++++.+.|++ .|
T Consensus       292 ~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  336 (425)
T 1vp4_A          292 SP---AITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS  336 (425)
T ss_dssp             CC---HHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CC---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            01   123333333332    345677778888899999999987 35

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.82  E-value=1.2e-18  Score=170.02  Aligned_cols=218  Identities=11%  Similarity=0.020  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.++++    +  ++|+|+|+++.+++.++       +|   ++|+++.++|.++...++..|++++.+
T Consensus        54 ~~lr~~la~~~~~~~~~----i--~~t~G~~~~l~~~~~~~-------~g---d~vl~~~p~~~~~~~~~~~~g~~~~~v  117 (337)
T 3p1t_A           54 PRVMRKLAEHFSCPEDN----L--MLVRGIDECFDRISAEF-------SS---MRFVTAWPGFDGYRARIAVSGLRHFEI  117 (337)
T ss_dssp             HHHHHHHHHHHTSCGGG----E--EEESHHHHHHHHHHHHS-------TT---SEEEEESSSCSHHHHHHTTSCCEEEEE
T ss_pred             HHHHHHHHHHhCcCHHH----E--EEeCCHHHHHHHHHHhc-------CC---CeEEEeCCCcHHHHHHHHHcCCEEEEe
Confidence            45566788889988765    6  89999999999988875       45   899999999999999999999999999


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccC
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS  333 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~  333 (438)
                      |+++++.+|+++++++  .+++++++++|+||||.+.|++++.++|+++++ +++|++|+++...     +    .....
T Consensus       118 ~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~-----~----~~~~~  185 (337)
T 3p1t_A          118 GLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSF-----R----ARGLA  185 (337)
T ss_dssp             CBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSC-----S----SSCCC
T ss_pred             cCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccc-----c----ccccc
Confidence            9988899999999987  568999999999999999999999999999997 6669999764321     1    11122


Q ss_pred             CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHH
Q 013675          334 VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLEN  412 (438)
Q Consensus       334 ~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~  412 (438)
                      ..+.+++..+++|++. .+.++|+++.++ ++..........            ++-+....+++.++++  ..+.+.+.
T Consensus       186 ~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~~~------------~~~~~~~~~a~~~~l~--~~~~~~~~  250 (337)
T 3p1t_A          186 YGENELVFRSFSKSYGLAGLRLGALFGPS-ELIAAMKRKQWF------------CNVGTLDLHALEAALD--NDRAREAH  250 (337)
T ss_dssp             CBTTEEEEEESSSTTCCTTTCCEEEECCH-HHHHHHHTTSCT------------TCSCHHHHHHHHHHHT--CHHHHHHH
T ss_pred             cCCCEEEEeeCchhccCcchheEEEEeCH-HHHHHHHhhcCC------------CCCCHHHHHHHHHHhC--CHHHHHHH
Confidence            3356788999999953 445678876643 333221111000            0011111223333332  22456777


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccc
Q 013675          413 TKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       413 ~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .++..++++++.+.|+++ ++++
T Consensus       251 ~~~~~~~~~~l~~~L~~~-g~~~  272 (337)
T 3p1t_A          251 IAKTLAQRRRVADALRGL-GYRV  272 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHHHHHHHHHHHHHHHHC-cCEE
Confidence            888888899999999887 5543

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.82  E-value=4.2e-19  Score=179.92  Aligned_cols=237  Identities=12%  Similarity=0.096  Sum_probs=163.8

Q ss_pred             chhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          166 FQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      .++..++++++.+++.+..+    .++++    +  ++|+|||+|+..++++++.     +|   ++|+++.+.|.++..
T Consensus        85 ~~g~~~l~~~la~~~~~~~~~~~~~~~~~----v--~~~~gg~~a~~~~~~~l~~-----~g---d~vl~~~p~~~~~~~  150 (435)
T 3piu_A           85 YHGLPAFKKAMVDFMAEIRGNKVTFDPNH----L--VLTAGATSANETFIFCLAD-----PG---EAVLIPTPYYPGFDR  150 (435)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTTSSCCCGGG----E--EEEEHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTTHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhCCCCCCCHHH----E--EEcCChHHHHHHHHHHhcC-----CC---CeEEECCCccccHHH
Confidence            34556777777777776655    44444    5  8999999999999998863     67   899999999999999


Q ss_pred             HHh-hcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          242 AAQ-YFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       242 a~~-~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      .+. ..|.+++.+|.++  ++.+|+++|++++++      ++++|++++|+||||.+.+   +++|+++|++||+++++|
T Consensus       151 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D  230 (435)
T 3piu_A          151 DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISD  230 (435)
T ss_dssp             HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            888 7899999999985  567999999999986      8999999999999999966   578888999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCC-cc-CC---------CCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCC
Q 013675          310 LCLGGFVLPFAKKLGYPIPPF-DF-SV---------QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSG  377 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~-~~-~~---------~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g  377 (438)
                      ++|+++...     +.....+ .. ..         ...+++..++||.+. .+..+|+++.+++.+..........+. 
T Consensus       231 ea~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-  304 (435)
T 3piu_A          231 EIYSGTAFS-----SPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL-  304 (435)
T ss_dssp             CTTGGGCCS-----SSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSC-
T ss_pred             ccccccccC-----CCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCC-
Confidence            999875431     0000000 00 01         223478889999953 445589988866554332111111000 


Q ss_pred             CccCCCCccCCCCCchHHHHHHHHHHHc--HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          378 GLYVSPTVAGSRPGGLIAGAWAALMSLG--QEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       378 ~~~~~~~~~gsr~~~~ia~~~aal~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                                 -+....+++.+++....  .+.+++..++..++++++.+.|++. +++
T Consensus       305 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  351 (435)
T 3piu_A          305 -----------VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GIS  351 (435)
T ss_dssp             -----------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             -----------CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence                       00111112222222111  2345677788888999999999876 554

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.82  E-value=1.4e-18  Score=175.71  Aligned_cols=238  Identities=10%  Similarity=0.020  Sum_probs=165.7

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCC--------CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEK--------ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~--------~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..+..++.+++.+++.+.+|.+..        +   ++  ++|+|+++|+.++++++.+     +|   ++|+++.++|+
T Consensus        77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~---~i--~~t~G~~~al~~~~~~l~~-----~g---d~Vlv~~p~y~  143 (425)
T 2r2n_A           77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQM---DL--CVTSGSQQGLCKVFEMIIN-----PG---DNVLLDEPAYS  143 (425)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCE---EE--EEESSHHHHHHHHHHHHCC-----TT---CEEEEESSCCH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCccccccCCcC---cE--EEeCcHHHHHHHHHHHhCC-----CC---CEEEEeCCCcH
Confidence            345567788888899998898641        2   26  9999999999999999763     67   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc------------cCcEEEEE-ecCCCCCccccCHH---HHHHHHHH
Q 013675          238 AYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN------------RNTVLIVG-SAPGFPHGIIDPIQ---ELGELALS  301 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~------------~~t~~vv~-~~~~~~tG~iddi~---~I~~la~~  301 (438)
                      .+...++..|++++.+|++++ .+|+++|+++++            +++++|++ ++++||||.+.|.+   +|+++|++
T Consensus       144 ~~~~~~~~~g~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~  222 (425)
T 2r2n_A          144 GTLQSLHPLGCNIINVASDES-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARK  222 (425)
T ss_dssp             HHHHHHGGGTCEEEEECEETT-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEeCcCCC-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHH
Confidence            999999999999999998765 499999999997            35788765 68999999998855   99999999


Q ss_pred             cCCeEEEeccccchhhhhhhhcCCCCCC-CccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCcc
Q 013675          302 HGTCLHVDLCLGGFVLPFAKKLGYPIPP-FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~-~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      ||+++++|++|+.+...     |...++ ..+...+.+++..+++|++..+..+|+++.+++ +..........+.    
T Consensus       223 ~~~~li~De~~~~~~~~-----g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~-l~~~l~~~~~~~~----  292 (425)
T 2r2n_A          223 YDFLIIEDDPYYFLQFN-----KFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKP-LIERVILHIQVST----  292 (425)
T ss_dssp             TTCEEEEECTTGGGBSS-----SSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHH-HHHHHHHHHHTTT----
T ss_pred             cCCEEEEECCcccccCC-----CCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHH-HHHHHHHHHHHhc----
Confidence            99999999999865431     110111 222223457888899999542233799887753 3322111110000    


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHcH----HHHHHHHHHHHHHHHHHHHHhhc-CCCc
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLGQ----EGYLENTKAIMEVSESIQKGLVL-FPMF  433 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g~----~g~~~~~~~~~~~a~~l~~~L~~-~~g~  433 (438)
                            ++-+....+++..++..++.    +.+++..++..++++++.+.|++ +|++
T Consensus       293 ------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  344 (425)
T 2r2n_A          293 ------LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGL  344 (425)
T ss_dssp             ------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred             ------CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence                  01111112233344443332    33556667777888888898887 5665

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.81  E-value=3.3e-19  Score=179.64  Aligned_cols=241  Identities=15%  Similarity=0.104  Sum_probs=171.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCC---CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKE---KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~---~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      |....+..++++++.+++.+.+|.+.   ++    +  ++|+|||+|+..+++++.     ++|   ++|+++.+.|.++
T Consensus        63 y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~----i--~~~~g~~~a~~~~~~~~~-----~~g---d~vl~~~p~~~~~  128 (422)
T 3fvs_A           63 YTKTFGYPPLTKILASFFGELLGQEIDPLRN----V--LVTVGGYGALFTAFQALV-----DEG---DEVIIIEPFFDCY  128 (422)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHTCCCCHHHH----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCTTH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc----E--EEECChHHHHHHHHHHHc-----CCC---CEEEEcCCCchhh
Confidence            43344567788888899998888653   23    5  899999999999999875     366   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC------------CCccCHHHHHHhhccCcEEEEEecCCCCCcccc---CHHHHHHHHHHcCC
Q 013675          240 DKAAQYFNIKLWRVPVDK------------EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGELALSHGT  304 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~------------~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id---di~~I~~la~~~~i  304 (438)
                      ...++..|.+++.+|+++            ++.+|++++++++++++++|++++|+||+|.+.   ++++|+++|++||+
T Consensus       129 ~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~  208 (422)
T 3fvs_A          129 EPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDV  208 (422)
T ss_dssp             HHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCc
Confidence            999999999999999875            457999999999999999999999999999998   48999999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCc-cC-CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccC
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFD-FS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYV  381 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~-~~-~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~  381 (438)
                      ++++|++|+++...     |...+++. .. ..+.+++..+++|.+. .+.++|+++.+++ +..........   ..  
T Consensus       209 ~li~De~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~---~~--  277 (422)
T 3fvs_A          209 VCITDEVYQWMVYD-----GHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDH-IMKHLRTVHQN---SV--  277 (422)
T ss_dssp             EEEEECTTTTCBCT-----TCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHH-HHHHHHHHHHT---TT--
T ss_pred             EEEEEccchhhccC-----CCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHH-HHHHHHHHHhh---cc--
Confidence            99999999875531     11000111 11 1245688889999943 3355898776543 32221111000   00  


Q ss_pred             CCCccCCCCCchHHHHHHHHHH------HcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          382 SPTVAGSRPGGLIAGAWAALMS------LGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~------~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                           .+-+....+++.+++..      ...+.+++..++..++++++.+.|+++ |++
T Consensus       278 -----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  330 (422)
T 3fvs_A          278 -----FHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLK  330 (422)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             -----CCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence                 00111112233333332      123567888889999999999999887 554

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.81  E-value=7.6e-19  Score=175.33  Aligned_cols=237  Identities=14%  Similarity=0.139  Sum_probs=168.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCC---CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEecCCCc
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNK---EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVSAH  236 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~---~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~~~~h  236 (438)
                      +....+..++++++.+++.+.+|.+   ++ +    +  ++|+|+++++.++++++..     +|-  .+++|+++.++|
T Consensus        62 y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~----i--~~t~g~~~al~~~~~~~~~-----~g~~~~~d~vl~~~p~~  130 (396)
T 3jtx_A           62 YPLTAGLPELRQACANWLKRRYDGLTVDADNE----I--LPVLGSREALFSFVQTVLN-----PVSDGIKPAIVSPNPFY  130 (396)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTS----E--EEESSHHHHHHHHHHHHCC-----C---CCCCEEEEEESCC
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCe----E--EEcCCcHHHHHHHHHHHhC-----CCCccCCCEEEEcCCCc
Confidence            3334456788888999999988864   55 4    6  8999999999999998863     330  125899999999


Q ss_pred             CcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHH---HHHHHHHHcCCeEEEeccc
Q 013675          237 SAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQ---ELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       237 ~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~---~I~~la~~~~i~lhVD~a~  312 (438)
                      .++...++..|++++.+|+++ ++.+|++++++++++++++|++++|+||||.+.|.+   +|+++|++||+++++|++|
T Consensus       131 ~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~  210 (396)
T 3jtx_A          131 QIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECY  210 (396)
T ss_dssp             HHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTT
T ss_pred             HhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence            999999999999999999965 557899999999999999999999999999998755   5999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCcc--------CCCCccEEEeCCCCC-CCCCCCcEEEEEecccccccchhcccccCCCccCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDF--------SVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP  383 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~--------~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  383 (438)
                      +++...     +.  ++...        ...+.+++..+++|. +..+.++|+++.+ +++............       
T Consensus       211 ~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~-------  275 (396)
T 3jtx_A          211 SEIYFD-----GN--KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGD-AELLKNFLLYRTYHG-------  275 (396)
T ss_dssp             TTCCST-----TC--CCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEEC-HHHHHHHHHHHHHHT-------
T ss_pred             cccccC-----CC--CCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeC-HHHHHHHHHHHhhcc-------
Confidence            865431     10  01111        024678889999995 4455668987654 444322111100000       


Q ss_pred             CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                         ++-+....+++.+++.  ..+.+++..++..++.+++.+.|++.
T Consensus       276 ---~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~  317 (396)
T 3jtx_A          276 ---SAMSIPVQRASIAAWD--DEQHVIDNRRLYQEKFERVIPILQQV  317 (396)
T ss_dssp             ---CCCCHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ---cCCCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               0111111223333333  24567788888889999999999874

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.81  E-value=4e-19  Score=178.19  Aligned_cols=244  Identities=13%  Similarity=0.071  Sum_probs=169.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      +....+..++++++.+++.+.+|.+.+. ..++  ++|+||++|+..+++++.     .+|   ++|+++.+.|..+...
T Consensus        57 y~~~~g~~~l~~~la~~~~~~~~~~~~~-~~~i--~~~~g~~~a~~~~~~~~~-----~~g---d~vl~~~p~~~~~~~~  125 (410)
T 3e2y_A           57 YTRGFGHPALVKALSCLYGKIYQRQIDP-NEEI--LVAVGAYGSLFNSIQGLV-----DPG---DEVIIMVPFYDCYEPM  125 (410)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHTSCCCT-TTSE--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCTTHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHhCCCCCC-CCCE--EEeCCcHHHHHHHHHHhc-----CCC---CEEEEeCCCchhhHHH
Confidence            3333456678888888888888864311 0126  899999999999999875     366   8999999999999999


Q ss_pred             HhhcCcEEEEeeCC-----------CCCccCHHHHHHhhccCcEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEE
Q 013675          243 AQYFNIKLWRVPVD-----------KEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHV  308 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~-----------~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhV  308 (438)
                      ++..|.+++.+|++           .++.+|++++++++++++++|++++|+||+|.+   +++++|+++|++||+++++
T Consensus       126 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~  205 (410)
T 3e2y_A          126 VRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCIS  205 (410)
T ss_dssp             HHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence            99999999999986           356789999999999999999999999999999   5699999999999999999


Q ss_pred             eccccchhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCc
Q 013675          309 DLCLGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTV  385 (438)
Q Consensus       309 D~a~gg~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~  385 (438)
                      |++|+++...     |...+++. . ...+.+++..+++|.+. .+.++|+++.+++ +..........   ..      
T Consensus       206 De~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~---~~------  270 (410)
T 3e2y_A          206 DEVYEWLVYT-----GHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAH-LIKHLQTVQQN---SF------  270 (410)
T ss_dssp             ECTTTTCBCT-----TCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHH-HHHHHHHHHHT---TT------
T ss_pred             EhhhhhcccC-----CCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHH-HHHHHHHHHHh---hc------
Confidence            9999866531     11000111 1 11234678888899943 3455888776543 32221110000   00      


Q ss_pred             cCCCCCchHHHHHHHHHH------HcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          386 AGSRPGGLIAGAWAALMS------LGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       386 ~gsr~~~~ia~~~aal~~------~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                       .+-+....+++..++..      ...+.+++..++..++++++.+.|+++ |++
T Consensus       271 -~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  323 (410)
T 3e2y_A          271 -YTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLK  323 (410)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             -cCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence             00111112233333331      124567888888999999999999887 554

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.81  E-value=4.2e-19  Score=177.03  Aligned_cols=228  Identities=16%  Similarity=0.090  Sum_probs=158.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++++.+++++|.+  +    +  ++|+|||+|+.+++++++-    ++|   ++|+++.++|+++..+++..|++++.
T Consensus        41 ~~~l~~~la~~~~~~--~----~--~~~~~gt~al~~~~~~~~~----~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~  105 (393)
T 1mdo_A           41 NQELEAAFCRLTGNQ--Y----A--VAVSSATAGMHIALMALGI----GEG---DEVITPSMTWVSTLNMIVLLGANPVM  105 (393)
T ss_dssp             HHHHHHHHHHHHCCS--E----E--EEESCHHHHHHHHHHHTTC----CTT---CEEEEESSSCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhCCC--c----E--EEecChHHHHHHHHHHcCC----CCC---CEEEeCCCccHhHHHHHHHCCCEEEE
Confidence            345556788888875  2    4  8999999999999998721    256   89999999999999999999999999


Q ss_pred             eeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          253 VPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       253 v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      +|+++ ++.+|+++++++++++|++|++++   ++|.+.|+++|.++|+++|+++++|++|+.+..+  .  +       
T Consensus       106 v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~--~--~-------  171 (393)
T 1mdo_A          106 VDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSY--K--G-------  171 (393)
T ss_dssp             ECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE--T--T-------
T ss_pred             EeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECccccCCeE--C--C-------
Confidence            99987 478999999999998999888764   6999999999999999999999999999743321  0  1       


Q ss_pred             cCCCC-ccEEEeCCC--CCCCCCCCcEEEEEecccccccchhccc-ccCCCccC------CCC----ccCCCCCchHHHH
Q 013675          332 FSVQG-VTSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLYV------SPT----VAGSRPGGLIAGA  397 (438)
Q Consensus       332 ~~~~g-vdsis~s~h--K~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~~~------~~~----~~gsr~~~~ia~~  397 (438)
                       ...+ .|+++.|+|  |++.+ ...|+++.+++++.+....... .+......      ...    ..|.........+
T Consensus       172 -~~~~~~d~~~~S~~k~K~l~~-~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  249 (393)
T 1mdo_A          172 -RHIGARGTAIFSFHAIKNITC-AEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNA  249 (393)
T ss_dssp             -EETTSSSEEEEECCTTSSSCS-SSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHH
T ss_pred             -eecCCCCeEEEeCCCCCcccc-ccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHH
Confidence             1123 799999999  99644 4567777765554332111100 00000000      000    1121111111122


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+++  ...+++++..++..++++++.+.|++++ ++
T Consensus       250 a~~~--~~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~  283 (393)
T 1mdo_A          250 AIAL--AQLQKLDALNARRAAIAAQYHQAMADLP-FQ  283 (393)
T ss_dssp             HHHH--HHHHTHHHHHHHHHHHHHHHHHHHHTSS-CE
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC-cc
Confidence            2222  2335677888888899999999998875 54

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.81  E-value=2.1e-19  Score=180.22  Aligned_cols=209  Identities=16%  Similarity=0.155  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcCc
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNI  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~Gi  248 (438)
                      ..++++.+++++|.+ ..       +++++||+|+.++++ +.     ++|   ++|+++.+.|.+...    .++..|+
T Consensus        57 ~~~lr~~la~~~g~~-~~-------i~~~sGt~a~~~al~-~~-----~~g---d~Vi~~~~~y~~~~~~~~~~~~~~G~  119 (393)
T 1n8p_A           57 RENLERAVAALENAQ-YG-------LAFSSGSATTATILQ-SL-----PQG---SHAVSIGDVYGGTHRYFTKVANAHGV  119 (393)
T ss_dssp             HHHHHHHHHHHTTCS-EE-------EEESCHHHHHHHHHH-TS-----CSS---CEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred             HHHHHHHHHHHhCCC-cE-------EEECChHHHHHHHHH-Hc-----CCC---CEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            456677899999986 32       566667999999998 54     367   899999999986544    4566799


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc----CCeEEEeccccchhhhhhhhcC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH----GTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~----~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      +++.+|++     | ++++++|+++|++|++++|+||+|.+.|+++|+++|+++    |+++|+|++|+.+...      
T Consensus       120 ~v~~v~~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~------  187 (393)
T 1n8p_A          120 ETSFTNDL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS------  187 (393)
T ss_dssp             CCEEESSH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC------
T ss_pred             EEEEeCCC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC------
Confidence            99999875     7 999999999999999999999999999999999999999    9999999999876541      


Q ss_pred             CCCCCCccCCCCccEEEeCCCCCCCCCCC--c-EEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675          325 YPIPPFDFSVQGVTSISVDVHKYGLAPKG--T-SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~-g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                         .+++   .|+|+++.++||+ ++|+|  . |+++.+++++..........           .|.+....  .+++++
T Consensus       188 ---~~~~---~~~di~~~S~sK~-~g~~G~rigG~~~~~~~~~~~~l~~~~~~-----------~g~~~~~~--~~~~~~  247 (393)
T 1n8p_A          188 ---NPLN---FGADIVVHSATKY-INGHSDVVLGVLATNNKPLYERLQFLQNA-----------IGAIPSPF--DAWLTH  247 (393)
T ss_dssp             ---CGGG---GTCSEEEEETTTT-TTCSSCCCCEEEEESCHHHHHHHHHHHHH-----------HCCCCCHH--HHHHHH
T ss_pred             ---CHHH---cCCeEEEEECccc-ccCCCCceeEEEEeCCHHHHHHHHHHHHh-----------cCCCCCHH--HHHHHH
Confidence               0122   3689999999999 67777  6 87776655443322111111           12222222  444444


Q ss_pred             HHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          402 MSLGQEGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      ..+  +.+....++..++++.+.+.|++.|.
T Consensus       248 ~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~  276 (393)
T 1n8p_A          248 RGL--KTLHLRVRQAALSANKIAEFLAADKE  276 (393)
T ss_dssp             HHH--TTHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             hcc--chHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            333  34556667777788888888877654

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.81  E-value=2.8e-19  Score=181.23  Aligned_cols=220  Identities=16%  Similarity=0.118  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-CCcCcHHHHHh-------
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDKAAQ-------  244 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-~~h~s~~~a~~-------  244 (438)
                      .+++.+++++++|.+...     .-+++++||+|+..++.++.     ++|   |+|+++. +.|.++...+.       
T Consensus        67 ~~~l~~~la~~~g~~~~~-----~~i~~~sGt~Ai~~al~al~-----~~G---d~Vl~~~~~~y~~~~~~~~l~g~~~~  133 (431)
T 3ht4_A           67 RDTLEKVYADVFGAEAGL-----VRPQIISGTHAISTALFGIL-----RPG---DELLYITGKPYDTLEEIVGVRGKGVG  133 (431)
T ss_dssp             HHHHHHHHHHHTTCSEEC-----CBTTSCSHHHHHHHHHHTTC-----CTT---CEEEECSSSCCTTHHHHTTSSSCSSS
T ss_pred             HHHHHHHHHHHhCCCccc-----ccceeeCHHHHHHHHHHHhC-----CCC---CEEEEeCCCCchhHHHHHhhcccccc
Confidence            556777899999997643     11224588999999998765     367   8999998 89999886654       


Q ss_pred             ---hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEec----CCCCCccccCHHHHHHHHHH--cCCeEEEeccccch
Q 013675          245 ---YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSA----PGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGF  315 (438)
Q Consensus       245 ---~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~----~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~  315 (438)
                         .+|++++.+|.++++.+|+++++++++++|++|++++    |++++|.+.|+++|+++|++  +|+++++|++|+.+
T Consensus       134 ~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~  213 (431)
T 3ht4_A          134 SFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEF  213 (431)
T ss_dssp             CSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTT
T ss_pred             hHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhh
Confidence               4799999999998999999999999999999999997    56666677889999999999  99999999999876


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC---CCCCCcEEEEEecccccccchh-cccccCCCccCCCCccCCCCC
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG---LAPKGTSVVLYRNREIRKHQFV-AVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~---~~p~g~g~l~~r~~~~~~~~~~-~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      ...           .+....|+|+++.++||++   ++|.| |+++.+ +++.+.... ......+.      ..|....
T Consensus       214 ~~~-----------~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~-~~li~~l~~~~~~~~~g~------~~~~~~~  274 (431)
T 3ht4_A          214 IEE-----------QEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGK-EQYVEACAYRLTSPGIGA------EAGASLY  274 (431)
T ss_dssp             SSS-----------CCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEEC-HHHHHHHHHHHSCTTTTT------SCSCCCS
T ss_pred             ccC-----------CCccccCCeEEEcCccccCCCCCCCce-EEEEec-HHHHHHHHHHhccCCccc------ccCccHH
Confidence            531           1122347899999999994   34677 887765 443322111 11110110      0111111


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .    ++++++  +......+.++..++++++++.|+++
T Consensus       275 ~----~~~~~~--~l~~~~~~~~~~~~~a~~l~~~L~~~  307 (431)
T 3ht4_A          275 S----LQEMYQ--GFFLAPHVAGQALKGAIFTAAFLEKL  307 (431)
T ss_dssp             C----SHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHh--HhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            1    222332  23445677788888999999999876

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.81  E-value=7.6e-19  Score=179.72  Aligned_cols=160  Identities=17%  Similarity=0.207  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----HhhcC
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFN  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----~~~~G  247 (438)
                      ..+++++++++++|.+  +    +  +++++|++|+.+++. ..     ++|   ++|+++.+.|.++...    ++..|
T Consensus       134 ~~~~l~~~la~~~g~~--~----~--i~~~sGt~al~~~l~-~~-----~~G---d~Vi~~~~~y~~~~~~~~~~~~~~G  196 (464)
T 1ibj_A          134 TRDALESLLAKLDKAD--R----A--FCFTSGMAALSAVTH-LI-----KNG---EEIVAGDDVYGGSDRLLSQVVPRSG  196 (464)
T ss_dssp             HHHHHHHHHHHHHTCS--E----E--EEESSHHHHHHHHHT-TS-----CTT---CEEEEESSCCHHHHHHHHHTSGGGT
T ss_pred             HHHHHHHHHHHHhCCC--e----E--EEECCHHHHHHHHHH-Hh-----CCC---CEEEEECCCchhHHHHHHHHHHHcC
Confidence            4667888999999975  2    3  788888999887765 22     366   8999999999998754    56779


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      ++++.+|.+     |+++++++|+++|++|++++|+||+|.+.|+++|+++|++||+++++|++|+.+..         .
T Consensus       197 ~~v~~v~~~-----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~---------~  262 (464)
T 1ibj_A          197 VVVKRVNTT-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL---------S  262 (464)
T ss_dssp             CEEEEECTT-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT---------C
T ss_pred             CEEEEeCCC-----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCccccc---------C
Confidence            999999875     89999999999999999999999999999999999999999999999999864322         1


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCCc--EEEEEeccccc
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKGT--SVVLYRNREIR  365 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g~--g~l~~r~~~~~  365 (438)
                      .+++   .++|+++.++||++++|.|+  |+++.+++++.
T Consensus       263 ~~~~---~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~  299 (464)
T 1ibj_A          263 RPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLA  299 (464)
T ss_dssp             CGGG---TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHH
T ss_pred             Chhh---cCCEEEEECCcccccCCCCCcEEEEEEChHHHH
Confidence            1233   47899999999997787775  98888765543

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.81  E-value=4.5e-19  Score=179.14  Aligned_cols=216  Identities=16%  Similarity=0.070  Sum_probs=156.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeE---cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-CCcCcHH----------
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNM---TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYD----------  240 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~---t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-~~h~s~~----------  240 (438)
                      ++.+.+++++|.+..        ++   +++||+|+..++.++.     ++|   |+|+++. +.|....          
T Consensus        78 ~Le~~lA~l~g~e~a--------lv~p~~~sGt~A~~~al~all-----~pG---D~Vl~~~~~~y~~~~~~~g~~~~~~  141 (427)
T 3hvy_A           78 SLDRVYANIFNTESA--------FVRPHFVNGTHAIGAALFGNL-----RPN---DTMMSICGMPYDTLHDIIGMDDSKK  141 (427)
T ss_dssp             HHHHHHHHHHTCSEE--------EEETTCCSHHHHHHHHHHHTC-----CTT---CEEEECSSSCCGGGHHHHTCCTTCC
T ss_pred             HHHHHHHHHhCCCce--------EEeCCCCcHHHHHHHHHHHhc-----CCC---CEEEEeCCCCchhHHHHhccccchh
Confidence            344578999998643        45   8999999999998875     377   9999998 8887665          


Q ss_pred             -HHHhhcCcEEEEeeCCCCCccCHHHHHHhhc--cCcEEEEEec----CCCCCccccCHHHHHHHHHH--cCCeEEEecc
Q 013675          241 -KAAQYFNIKLWRVPVDKEFRADVKAIKKYIN--RNTVLIVGSA----PGFPHGIIDPIQELGELALS--HGTCLHVDLC  311 (438)
Q Consensus       241 -~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~--~~t~~vv~~~----~~~~tG~iddi~~I~~la~~--~~i~lhVD~a  311 (438)
                       ..++.+|++++.+|. +++.+|+++++++++  ++|++|++++    |+||+|.+.|+++|+++|++  +|++++||+|
T Consensus       142 ~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a  220 (427)
T 3hvy_A          142 VGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNC  220 (427)
T ss_dssp             SCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred             hhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECC
Confidence             445667999999998 788999999999999  7899999999    99999999999999999999  8999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC--CCcEEEEEecccccccchh-cccccCCCccCCCCccCC
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFV-AVTEWSGGLYVSPTVAGS  388 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~~~~-~~~~~~g~~~~~~~~~gs  388 (438)
                      |+.+...           .+....|+|+++.++||++.++  ...|+++.+ +++.+.... ......|. ..     |.
T Consensus       221 ~~~~~~~-----------~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~-~~-----~~  282 (427)
T 3hvy_A          221 YGEFVEE-----------KEPTDVGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGG-EC-----GS  282 (427)
T ss_dssp             TCTTTSS-----------SCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGG-GC-----CC
T ss_pred             ccccccC-----------CCCcccCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCccc-cc-----CC
Confidence            9765421           1112347899999999995442  233776665 444332211 11110110 00     10


Q ss_pred             CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      ...    .+|.+++  |..-...+.++..+++.++++.|++++
T Consensus       283 ~~~----~a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~g  319 (427)
T 3hvy_A          283 TFG----VMRSLYE--GLFMAPHVTIEAVKGAVFCARIMELAG  319 (427)
T ss_dssp             CTT----CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHH----HHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            011    1344443  334456788889999999999999874

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.81  E-value=5.8e-19  Score=174.93  Aligned_cols=247  Identities=13%  Similarity=0.046  Sum_probs=170.7

Q ss_pred             HHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc--C
Q 013675          148 INEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR--G  223 (438)
Q Consensus       148 ~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~--G  223 (438)
                      +.+++.... .....|....+..++++++.+++.+.+|.  ++++    +  ++|+|+|+++.++++++..     +  |
T Consensus        41 v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~----i--~~t~g~~~al~~~~~~~~~-----~~~g  108 (376)
T 3ezs_A           41 IQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENE----L--ISTLGSREVLFNFPSFVLF-----DYQN  108 (376)
T ss_dssp             HHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGG----E--EEESSSHHHHHHHHHHHTT-----TCSS
T ss_pred             HHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH----E--EECcCcHHHHHHHHHHHcC-----CCCC
Confidence            344444433 22233333445678888999999999998  4444    6  8999999999999998763     5  6


Q ss_pred             CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHH
Q 013675          224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELAL  300 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~  300 (438)
                         ++|+++.++|.++...++..|.+++.+|++++..+++ ++++++++++++|++++|+||||.+.|   +++|+++|+
T Consensus       109 ---d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~  184 (376)
T 3ezs_A          109 ---PTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLAL  184 (376)
T ss_dssp             ---CEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             ---CEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHH
Confidence               8999999999999999999999999999987555666 788888888999999999999999977   667788899


Q ss_pred             HcCCeEEEeccccchhhhhhhhcCCCCCCCcc------CCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhccc
Q 013675          301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF------SVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~------~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      +||+++++|++|+++...     +...+....      ...+.+++..+++|.+ ..+.++|+++.+ +++.........
T Consensus       185 ~~~~~li~De~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~  258 (376)
T 3ezs_A          185 KHDFILINDECYSEIYEN-----TPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGD-SRLLEKYKAFRA  258 (376)
T ss_dssp             HHTCEEEEECTTTTCBSS-----SCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHHT
T ss_pred             HcCcEEEEEccchhhccC-----CCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeC-HHHHHHHHHHHh
Confidence            999999999999876531     100100111      0356788999999995 244568887654 443322111100


Q ss_pred             ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhh
Q 013675          374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLV  428 (438)
Q Consensus       374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~  428 (438)
                      ..          ..+-+....+++.+++..  .+.+++..++..++.+++.+.|+
T Consensus       259 ~~----------~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~  301 (376)
T 3ezs_A          259 YL----------GYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK  301 (376)
T ss_dssp             TT----------CCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST
T ss_pred             hh----------cCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc
Confidence            00          001111112233334432  34567888888889999998886

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.81  E-value=8.4e-19  Score=176.14  Aligned_cols=213  Identities=17%  Similarity=0.113  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH-----hhcCc
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-----QYFNI  248 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~-----~~~Gi  248 (438)
                      .++.+.++++.|.+.      .  +++++|++|+..+ .++.     ++|   ++|+++.+.|.+....+     ...|+
T Consensus        70 ~~l~~~la~l~g~~~------~--~~~~sG~~Ai~~~-~~l~-----~~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~  132 (400)
T 3nmy_A           70 FAYERCVAALEGGTR------A--FAFASGMAATSTV-MELL-----DAG---SHVVAMDDLYGGTFRLFERVRRRTAGL  132 (400)
T ss_dssp             HHHHHHHHHHHTCSE------E--EEESSHHHHHHHH-HTTS-----CTT---CEEEEESSCCHHHHHHHHHTHHHHHCC
T ss_pred             HHHHHHHHHHhCCCC------E--EEecCHHHHHHHH-HHHc-----CCC---CEEEEeCCCchHHHHHHHHhhHhhcCe
Confidence            345556888888762      2  6778889999874 3332     366   89999999998655553     33599


Q ss_pred             EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      +++.++.+     |+++++++|+++|++|++++|+||+|.+.|+++|+++|++||+++++|++++.+..   .      .
T Consensus       133 ~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~---~------~  198 (400)
T 3nmy_A          133 DFSFVDLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPML---Q------R  198 (400)
T ss_dssp             EEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHH---C------C
T ss_pred             EEEEECCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc---C------C
Confidence            99999875     89999999999999999999999999999999999999999999999999975432   1      1


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCC-C-cE-EEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPK-G-TS-VVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~-g-~g-~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                      +++   .|+|+++.+++|++.+|. . .| +++.+++++.+........ .          |....  ...+|++++.  
T Consensus       199 ~~~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~-~----------g~~~~--~~~a~~~l~~--  260 (400)
T 3nmy_A          199 PLS---LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS-I----------GGVQG--PFDSFLALRG--  260 (400)
T ss_dssp             GGG---GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHH-H----------CCBCC--HHHHHHHHHH--
T ss_pred             hhh---cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHh-c----------CCCCC--HHHHHHHHHh--
Confidence            232   378999999999976662 2 35 4555555443322111110 0          11111  2356666643  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+.+..+.++..++++++.+.|++.|.++-
T Consensus       261 l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~  290 (400)
T 3nmy_A          261 LKTLPLRMRAHCENALALAQWLETHPAIEK  290 (400)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHcCCCEeE
Confidence            456778888899999999999998887653

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.80  E-value=1.1e-18  Score=175.19  Aligned_cols=230  Identities=16%  Similarity=0.190  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH---HHHhhc
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD---KAAQYF  246 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~---~a~~~~  246 (438)
                      ..+++.+++++++++|.++..       +++++||+|+..+++++.     ++|   ++|+++.+.|.++.   ......
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~-------v~~~sGs~a~~~a~~~~~-----~~g---d~v~~~~~~~~~~~~~~~~~~~~  139 (420)
T 3gbx_A           75 DVVEQLAIDRAKELFGADYAN-------VQPHSGSQANFAVYTALL-----QPG---DTVLGMNLAQGGHLTHGSPVNFS  139 (420)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHC-----CTT---CEEEEEEEC------------CH
T ss_pred             HHHHHHHHHHHHHHhCCCCce-------eEecCcHHHHHHHHHHhc-----CCC---CEEEecchhhcceeccchhhhhc
Confidence            456777778999999997654       445566999999988875     367   89999999998743   222223


Q ss_pred             C--cEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          247 N--IKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       247 G--i~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      |  ...+.+++++++.+|+++|++++++ ++++|++++|+++  ...|+++|+++|++||+++++|++++.+...    .
T Consensus       140 g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~----~  213 (420)
T 3gbx_A          140 GKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIA----A  213 (420)
T ss_dssp             HHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHH----T
T ss_pred             ccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhcee----c
Confidence            3  4566667777889999999999987 5899999888875  5889999999999999999999997644331    1


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc--cccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR--EIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL  401 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~--~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal  401 (438)
                      +.    .......+|+++.++||++.+|.| |+++.++.  ++.........         +...++.+...++++.+++
T Consensus       214 ~~----~~~~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~a~  279 (420)
T 3gbx_A          214 GV----YPNPVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVF---------PSAQGGPLMHVIAGKAVAL  279 (420)
T ss_dssp             TS----SCCSTTTSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC-------------CCCCHHHHHHHHHHH
T ss_pred             cc----CCcccccCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcC---------CCCCCCcchhHHHHHHHHH
Confidence            11    111122489999999999667776 87776651  33322111000         0111222233345666666


Q ss_pred             HHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          402 MSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .....+++++..++..++++++.+.|++. ++++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  312 (420)
T 3gbx_A          280 KEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKV  312 (420)
T ss_dssp             HHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCee
Confidence            55556778899999999999999999873 5543

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.80  E-value=2.3e-19  Score=179.45  Aligned_cols=227  Identities=15%  Similarity=0.153  Sum_probs=158.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++.+++++|.++++    +  ++|+|+++++.++++++.     .+|   ++|+++.++|.++...++..|.+++.+|
T Consensus        78 ~l~~~la~~~g~~~~~----v--~~~~g~~~al~~~~~~~~-----~~g---d~Vl~~~p~y~~~~~~~~~~g~~~~~~~  143 (397)
T 2zyj_A           78 PLRAFVAEWIGVRPEE----V--LITTGSQQALDLVGKVFL-----DEG---SPVLLEAPSYMGAIQAFRLQGPRFLTVP  143 (397)
T ss_dssp             HHHHHHHHHHTSCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHHhCCChhh----E--EEeccHHHHHHHHHHHhC-----CCC---CEEEEeCCCcHHHHHHHHHcCCEEEecC
Confidence            3444566667876654    6  899999999999999875     366   8999999999999999999999999999


Q ss_pred             CCCCCccCHHHHHHhhcc-CcEEE-EEecCCCCCccccCHH---HHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675          255 VDKEFRADVKAIKKYINR-NTVLI-VGSAPGFPHGIIDPIQ---ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP  329 (438)
Q Consensus       255 ~~~~~~~d~~~Le~~I~~-~t~~v-v~~~~~~~tG~iddi~---~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~  329 (438)
                      .++++ +|+++|++++++ ++++| ++++|+||||.+.|.+   +|+++|++||+++++|++|+++...     |...++
T Consensus       144 ~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-----g~~~~~  217 (397)
T 2zyj_A          144 AGEEG-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFG-----EARLPS  217 (397)
T ss_dssp             EETTE-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCS-----SCCCCC
T ss_pred             cCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCC-----CCCCCc
Confidence            87655 999999999987 78887 5799999999998754   8999999999999999999875431     110001


Q ss_pred             C-ccCCC---CccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-
Q 013675          330 F-DFSVQ---GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-  404 (438)
Q Consensus       330 ~-~~~~~---gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-  404 (438)
                      + .....   +.+++..++||++..+.++|+++.+ +++.+........+.         .+. +   ..++.++...+ 
T Consensus       218 ~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~---------~~~-~---~~~~~a~~~~l~  283 (397)
T 2zyj_A          218 LFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAH-PEALQKLVQAKQGAD---------LHT-P---MLNQMLVHELLK  283 (397)
T ss_dssp             HHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECC-HHHHHHHHHHHHHHH---------SSC-C---HHHHHHHHHHHT
T ss_pred             hhhhCcccCCCeEEEEecccccccccceeEEEecC-HHHHHHHHHHHHhhc---------CCC-C---HHHHHHHHHHHH
Confidence            1 11111   2347888999996522457988776 443322111111110         001 1   11333333333 


Q ss_pred             -cH-HHHHHHHHHHHHHHHHHHHHhhc-CC-Cccc
Q 013675          405 -GQ-EGYLENTKAIMEVSESIQKGLVL-FP-MFLP  435 (438)
Q Consensus       405 -g~-~g~~~~~~~~~~~a~~l~~~L~~-~~-g~~~  435 (438)
                       +. +.+++..++..++++++.+.|++ +| ++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~  318 (397)
T 2zyj_A          284 EGFSERLERVRRVYREKAQAMLHALDREVPKEVRY  318 (397)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEE
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence             22 45677788888899999999986 56 4653

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.80  E-value=5.3e-19  Score=178.46  Aligned_cols=243  Identities=14%  Similarity=0.094  Sum_probs=160.8

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCC--CCC--CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGN--KEK--ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~--~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      .|....+..++.+++.+++....+.  +++  +    +  ++|+|||+|+.++++....   ..+|   ++|+++.++|.
T Consensus        87 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~----i--~~t~G~t~al~~~~~~~~~---~~~g---d~Vlv~~p~~~  154 (420)
T 4f4e_A           87 GYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVV----T--AQALGGTGALKIGADFLRT---LNPK---AKVAISDPSWE  154 (420)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE----E--EEEEHHHHHHHHHHHHHHH---HCTT---CCEEEEESCCH
T ss_pred             CCCCCCCcHHHHHHHHHHhcCCCccccccCceE----E--EECCccHHHHHHHHHHHHH---hCCC---CEEEEeCCCcH
Confidence            3444556666777666666443331  233  3    5  8999999999999654321   1367   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeC--CCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          238 AYDKAAQYFNIKLWRVPV--DKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~--~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      ++...++..|.+++.+|+  ++++.+|+++++++++   ++++++++++|+||||.+.+   +++|+++|++||+++++|
T Consensus       155 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D  234 (420)
T 4f4e_A          155 NHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLD  234 (420)
T ss_dssp             HHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             hHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEc
Confidence            999999999999999998  3478999999999998   67899999999999999955   678999999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEE--eccccccc---chhc--ccccCCCcc
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLY--RNREIRKH---QFVA--VTEWSGGLY  380 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~--r~~~~~~~---~~~~--~~~~~g~~~  380 (438)
                      ++|+++....-+.. ..+..+. ...+.+++..+++|. ++++|  +|+++.  .+++....   ....  ...|.+   
T Consensus       235 e~y~~~~~~~~~~~-~~~~~~~-~~~~~~i~~~S~SK~-~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  308 (420)
T 4f4e_A          235 IAYQGFGESIEADA-AAVRLFA-AANLNVFVSSSFSKS-FSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSN---  308 (420)
T ss_dssp             ESCTTSSSCTTGGG-HHHHHHH-HTTCCEEEEEECTTT-TTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSS---
T ss_pred             cccccccCCcchhh-HHHHHHH-hcCCCEEEEEeCCcc-CcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCC---
Confidence            99987653100000 0000010 123457888899999 56555  888764  23332221   1100  011110   


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHH-----cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSL-----GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                              -+....+++..++..-     ..+.+++..++..++++++.+.|+++
T Consensus       309 --------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          309 --------PPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             --------CCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    0111111122222211     13446778888899999999999886

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.80  E-value=1.9e-18  Score=172.68  Aligned_cols=179  Identities=20%  Similarity=0.231  Sum_probs=144.9

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      ..++..++.+++.+++.+.+|.+  +++    +  ++|+|+|+|+.++++++..     +|  +++|+++.++|.++...
T Consensus        74 ~~~g~~~lr~~la~~l~~~~g~~~~~~~----i--~~~~g~~~al~~~~~~l~~-----~g--~d~vl~~~p~~~~~~~~  140 (398)
T 3ele_A           74 SAQGDVETRAAIAEFLNNTHGTHFNADN----L--YMTMGAAASLSICFRALTS-----DA--YDEFITIAPYFPEYKVF  140 (398)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESSHHHHHHHHHHHHCC-----ST--TCEEEEESSCCTHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHhCCCCChHH----E--EEccCHHHHHHHHHHHHcC-----CC--CCEEEEeCCCchhhHHH
Confidence            34556788889999999998853  443    6  8999999999999998752     33  26899999999999999


Q ss_pred             HhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHH------cCCeEEEeccc
Q 013675          243 AQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALS------HGTCLHVDLCL  312 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~------~~i~lhVD~a~  312 (438)
                      ++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||||.+.|   +++|+++|++      ||+++++|++|
T Consensus       141 ~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~  220 (398)
T 3ele_A          141 VNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPY  220 (398)
T ss_dssp             HHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTT
T ss_pred             HHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccc
Confidence            999999999999986 6789999999999999999999999999999988   6777789999      99999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecc
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNR  362 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~  362 (438)
                      +.+...     |... +......+.+++..+++|++. .+.++|+++.+++
T Consensus       221 ~~~~~~-----~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~  265 (398)
T 3ele_A          221 REIVYD-----GIKV-PFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDE  265 (398)
T ss_dssp             TTCBCT-----TCCC-CCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTT
T ss_pred             cccccC-----CCCc-CChHhhcCCeEEEEehhhcCCCccceeEEEEEcch
Confidence            876531     1112 222234456788999999953 4456899887755

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.79  E-value=1e-18  Score=172.41  Aligned_cols=219  Identities=16%  Similarity=0.124  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      .++++.+++++|.++++    +  ++|+|||+|+.++++++.     ++|   ++|+++.++|.++...++..|++++.+
T Consensus        68 ~~lr~~la~~~g~~~~~----i--~~t~g~~~al~~~~~~l~-----~~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~v  133 (360)
T 3hdo_A           68 QKLREVAGELYGFDPSW----I--IMANGSDEVLNNLIRAFA-----AEG---EEIGYVHPSYSYYGTLAEVQGARVRTF  133 (360)
T ss_dssp             HHHHHHHHHHHTCCGGG----E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEESSSCTHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHhCcCcce----E--EEcCCHHHHHHHHHHHHh-----CCC---CEEEEcCCChHHHHHHHHHCCCEEEEe
Confidence            35666788888987665    6  999999999999999875     367   899999999999999999999999999


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc-
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF-  332 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~-  332 (438)
                      |+++++.+  ++++++++  ++++++++|+||+|.+.|+++|.++|+++|+++++|++|+++.-    . +    .... 
T Consensus       134 ~~~~~~~~--~~l~~~~~--~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~----~-~----~~~~~  200 (360)
T 3hdo_A          134 GLTGDFRI--AGFPERYE--GKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAE----S-N----ALELV  200 (360)
T ss_dssp             CBCTTSSB--TTCCSSBC--SSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSS----C-C----CTHHH
T ss_pred             eCCCCCCH--HHHHhhcC--CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCC----c-c----hhHHh
Confidence            99877666  55555443  56999999999999999999999999999999999999986421    0 1    1111 


Q ss_pred             CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHH
Q 013675          333 SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLE  411 (438)
Q Consensus       333 ~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~  411 (438)
                      ...+.++++.+++|.+. .+.++|+++. ++++.+........|            +-+....+++.++++.  .+.+++
T Consensus       201 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~a~~~~l~~--~~~~~~  265 (360)
T 3hdo_A          201 RRHENVVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDHY------------NLDRLAQAACVAALRD--QAYLSE  265 (360)
T ss_dssp             HHCSSEEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCSC------------CSCHHHHHHHHHHHHC--HHHHHH
T ss_pred             ccCCCEEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCCC------------CCCHHHHHHHHHHhcC--HHHHHH
Confidence            12345688889999943 4456788776 444433221111111            1111112233344432  456788


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCccc
Q 013675          412 NTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       412 ~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++..++++++.+.|+++ ++++
T Consensus       266 ~~~~~~~~~~~l~~~L~~~-~~~~  288 (360)
T 3hdo_A          266 CCRRIRETREWFTTELRSI-GYDV  288 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCEE
Confidence            8899999999999999887 5543

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.79  E-value=2.5e-18  Score=172.05  Aligned_cols=228  Identities=14%  Similarity=0.065  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      ...++++.+++++|.+ ++    +  ++|+| ++++..++.++..   ..+|   ++|+++.+.|+++..+++..|++++
T Consensus        92 ~~~~l~~~la~~~~~~-~~----i--~~~sG-~~a~~~~~~~l~~---~~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~  157 (401)
T 2bwn_A           92 YHRRLEAEIAGLHQKE-AA----L--VFSSA-YNANDATLSTLRV---LFPG---LIIYSDSLNHASMIEGIKRNAGPKR  157 (401)
T ss_dssp             HHHHHHHHHHHHTTCS-EE----E--EESCH-HHHHHHHHHHHHH---HSTT---CEEEEETTCCHHHHHHHHHSCCCEE
T ss_pred             HHHHHHHHHHHHhCCC-cE----E--EECCc-HHHHHHHHHHHhc---CCCC---CEEEECchhhHHHHHHHHHcCCeEE
Confidence            3456677888899874 33    3  55554 5588777776532   1356   8999999999999999999999999


Q ss_pred             EeeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh-hhhhhcCCC
Q 013675          252 RVPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL-PFAKKLGYP  326 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~-pf~~~~g~~  326 (438)
                      .+|.+     |+++++++++    ++|++|++++++||+|.+.|+++|.++|++||+++++|++|+.+.. |    .|..
T Consensus       158 ~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~----~g~~  228 (401)
T 2bwn_A          158 IFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGP----RGAG  228 (401)
T ss_dssp             EECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSST----TSCC
T ss_pred             EEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCC----CCce
Confidence            99975     7899999887    5799999999999999999999999999999999999999983321 1    0100


Q ss_pred             CC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          327 IP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       327 ~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                      .. ..+. ..+.|.+..+++|.+ +..| |+++.+ +++..........|.   +    ..++.+ ...+++.++++.+.
T Consensus       229 ~~~~~~~-~~~~~i~~~s~sK~~-~~~G-G~~~~~-~~~~~~l~~~~~~~~---~----~~~~~~-~~~~a~~~al~~~~  296 (401)
T 2bwn_A          229 VAERDGL-MHRIDIFNGTLAKAY-GVFG-GYIAAS-ARMVDAVRSYAPGFI---F----STSLPP-AIAAGAQASIAFLK  296 (401)
T ss_dssp             HHHHHTC-GGGCSEEEEESSSTT-CSCC-EEEEEC-HHHHHHHHHHCHHHH---T----SBCCCH-HHHHHHHHHHHHHT
T ss_pred             eeeccCc-cccCcEEEeechhhc-cCCC-CEEecC-HHHHHHHHHhCcCce---e----cCCCCH-HHHHHHHHHHHHHH
Confidence            00 0010 123588888999994 5455 776654 433322111011110   0    011212 34556677887776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          406 QEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..|+++..++..++++++.+.|+++ |+++
T Consensus       297 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  325 (401)
T 2bwn_A          297 TAEGQKLRDAQQMHAKVLKMRLKAL-GMPI  325 (401)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHH-TCCB
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence            6778899999999999999999876 5543

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.79  E-value=5.7e-18  Score=174.93  Aligned_cols=246  Identities=13%  Similarity=0.120  Sum_probs=168.7

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhC-C--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCc
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLG-N--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAH  236 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g-~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h  236 (438)
                      ..|..+.+..++++++.+++.+..| .  ++++    +  ++|+|+++++.++++++.+     +|- .+++|+++.+.|
T Consensus       123 ~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~----i--~~t~G~~~ai~~~~~~l~~-----~gd~~~d~Vlv~~p~y  191 (498)
T 3ihj_A          123 GSYSASQGVNCIREDVAAYITRRDGGVPADPDN----I--YLTTGASDGISTILKILVS-----GGGKSRTGVMIPIPQY  191 (498)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHTTTCCCCGGG----E--EEESSHHHHHHHHHHHHCC-----CCGGGSEEEEEEESCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhcCCCCCCccc----E--EEcCCHHHHHHHHHHHHcC-----CCCCCCCEEEEeCCCc
Confidence            4456677778889999999988875 5  3444    6  8999999999999998763     441 124899999999


Q ss_pred             CcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc-----CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          237 SAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR-----NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       237 ~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~-----~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      +++..+++..|++++.+++++  ++.+|+++|++++++     ++++|++++|+||||.+.+   +++|+++|++||+++
T Consensus       192 ~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~l  271 (498)
T 3ihj_A          192 PLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFL  271 (498)
T ss_dssp             THHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred             hhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEE
Confidence            999999999999999999986  578999999999987     6899999999999999965   677999999999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCCccCC--------CCcc-EEEeCCCCCCC--CCCCcEEEEE--ecccccccchhccc
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPFDFSV--------QGVT-SISVDVHKYGL--APKGTSVVLY--RNREIRKHQFVAVT  373 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~~~~~--------~gvd-sis~s~hK~~~--~p~g~g~l~~--r~~~~~~~~~~~~~  373 (438)
                      ++|++|+.+...  .  +...+++....        ..+. ++..+++|.+.  ++..+|++++  .++++.........
T Consensus       272 i~De~y~~~~~~--~--~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~  347 (498)
T 3ihj_A          272 LADEVYQDNVYS--P--DCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLS  347 (498)
T ss_dssp             EEECTTTTCBCC--T--TCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHH
T ss_pred             EEEcCccccccC--C--CCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHh
Confidence            999999865531  0  00011111000        1222 45568899953  4556888775  45554433211111


Q ss_pred             ccCCCccCCCCccCCCCCchHHHHHHHHHHHc------------HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG------------QEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g------------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+.              .....++.+....+.            .+...++.++..++++++.+.|+++||+++
T Consensus       348 ~~~--------------~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~  407 (498)
T 3ihj_A          348 VRL--------------CPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHC  407 (498)
T ss_dssp             HSC--------------CCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             ccC--------------CCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEe
Confidence            000              011112322222221            122456667888999999999999988765

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.79  E-value=5.7e-18  Score=169.03  Aligned_cols=244  Identities=11%  Similarity=0.054  Sum_probs=160.3

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCC--CCC--CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGN--KEK--ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~--~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      .|...++..++.+++.+++....+.  +++  +    +  ++|+|||+|+.++++.....   .+|   ++|+++.++|.
T Consensus        65 ~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~----i--~~t~g~~~a~~~~~~~~~~~---~~g---d~vl~~~p~~~  132 (397)
T 3fsl_A           65 LYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVA----T--IQTLGGSGALKVGADFLKRY---FPE---SGVWVSDPTWE  132 (397)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE----E--EEESHHHHHHHHHHHHHHHH---CTT---CCEEEESSCCH
T ss_pred             cCCCCCchHHHHHHHHHHHhcCCcccccccceE----E--EEcCCcHHHHHHHHHHHHhc---CCC---CeEEEeCCCch
Confidence            3444556666666666665443331  333  4    6  89999999999996543311   366   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeC--CCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          238 AYDKAAQYFNIKLWRVPV--DKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~--~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      ++...++..|.+++.+|+  ++++.+|+++++++++   ++++++++++|+||||.+.+   +++|+++|+++|+++++|
T Consensus       133 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D  212 (397)
T 3fsl_A          133 NHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLD  212 (397)
T ss_dssp             HHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEe
Confidence            999999999999999998  4578999999999998   67899999999999999955   669999999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEE--ecccccccchhc-----ccccCCCcc
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLY--RNREIRKHQFVA-----VTEWSGGLY  380 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~--r~~~~~~~~~~~-----~~~~~g~~~  380 (438)
                      ++|+++.... +........+. ...+.+++..+.+|. ++++|  +|+++.  .+++........     ...|..   
T Consensus       213 e~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~S~SK~-~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  286 (397)
T 3fsl_A          213 IAYQGFGAGM-EEDAYAIRAIA-SAGLPALVSNSFSKI-FSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSS---  286 (397)
T ss_dssp             ESCTTSSSCT-TGGGHHHHHHH-HTTCCEEEEEECTTT-TTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSS---
T ss_pred             cCchhhccCc-ccccHHHHHHH-hcCCCEEEEeccccc-ccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCC---
Confidence            9998765310 00000000010 123346778888999 55545  788765  333332211100     001110   


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHH-----cHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSL-----GQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                              .+....+++..++..-     ..+.+++..++..++++++.+.|++++
T Consensus       287 --------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  334 (397)
T 3fsl_A          287 --------PPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEM  334 (397)
T ss_dssp             --------CCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                    0111111111222110     145677888889999999999998764

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.79  E-value=4.5e-19  Score=188.48  Aligned_cols=228  Identities=11%  Similarity=0.067  Sum_probs=164.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR  252 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~  252 (438)
                      ..++.+.+|+++|.+..     +  ++++|+|.||..++.++.     ++|   |+|+++...|.|+..++...|++++.
T Consensus       197 i~eaE~~lA~~fGa~~a-----~--~v~nGts~An~~ai~al~-----~pG---D~VLv~r~~H~S~~~~l~lsGa~pv~  261 (715)
T 3n75_A          197 HKEAEQYIARVFNADRS-----Y--MVTNGTSTANKIVGMYSA-----PAG---STILIDRNCHKSLTHLMMMSDVTPIY  261 (715)
T ss_dssp             HHHHHHHHHHHHTCSEE-----E--EESSHHHHHHHHHHHHHC-----CTT---CEEEEESSCCHHHHHHHHHSCCEEEE
T ss_pred             HHHHHHHHHHHhCCCCc-----e--EECcHHHHHHHHHHHHhC-----CCC---CEEEECCCccHHHHHHHHHcCCEEEE
Confidence            44556679999999754     2  567777899999998876     378   99999999999999999999999999


Q ss_pred             eeCCC-CCc----c-----CHHHHHHhhccC--cE---EEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          253 VPVDK-EFR----A-----DVKAIKKYINRN--TV---LIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       253 v~~~~-~~~----~-----d~~~Le~~I~~~--t~---~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ++.+. ++.    +     |+++++++|+++  ++   ++++++| |++|.+.|+++|+++|++++  +++|+||++.+.
T Consensus       262 v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~  338 (715)
T 3n75_A          262 FRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTN  338 (715)
T ss_dssp             ECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGG
T ss_pred             EeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccc
Confidence            98753 233    3     899999999853  34   8999999 88999999999999998763  899999987642


Q ss_pred             hhhhhcCCCCCCCccCCC--CccEE---EeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          318 PFAKKLGYPIPPFDFSVQ--GVTSI---SVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~--gvdsi---s~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                       |...    .|.......  ++|.+   +.|+||++.++.++|++.++++ .....+.....+        ...++.+..
T Consensus       339 -f~~~----~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-i~~~~~~~~~~~--------~~STSpsy~  404 (715)
T 3n75_A          339 -FSPI----YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMM--------HTTTSPHYG  404 (715)
T ss_dssp             -GSGG----GTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-CCHHHHHHHHHH--------TSCSSCCHH
T ss_pred             -cCCc----cccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-hhHHHHHHHHHh--------hcCCCchHH
Confidence             2111    111111111  25655   8999999888888999998865 221111111111        112234445


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      +++++-++++.+-...-.+..++..+++++++++|+++++
T Consensus       405 ~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~  444 (715)
T 3n75_A          405 IVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT  444 (715)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6778888887775422355788999999999999988754

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.79  E-value=7e-19  Score=176.19  Aligned_cols=235  Identities=14%  Similarity=0.034  Sum_probs=158.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAA  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~  243 (438)
                      .+...++.+++++++++++|++..+   ++  ++ |+|||+|+.++++++..     +|    .++++...|.. +...+
T Consensus        73 ~~~~~~~~~~~~~~la~~~g~~~~~---~i--~~~t~g~t~al~~~~~~l~~-----~g----v~~v~~~~~~~~~~~~~  138 (398)
T 2fyf_A           73 QAPVKNLVGRVRSGLAELFSLPDGY---EV--ILGNGGATAFWDAAAFGLID-----KR----SLHLTYGEFSAKFASAV  138 (398)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCTTC---EE--EEEETCHHHHHHHHHHHTCS-----SC----EEEEECSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCc---eE--EEeCCchhHHHHHHHHHhcC-----CC----eEEEeCCHHHHHHHHHH
Confidence            4566677889999999999997432   14  77 99999999999998742     23    24444444532 23345


Q ss_pred             hhc--CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          244 QYF--NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       244 ~~~--Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      ..+  |.+++.+|++.+...+.     .++++|++|++++++||||.+.|+++|.++   +|+++|+|++++.+..    
T Consensus       139 ~~~~~g~~~~~v~~~~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~----  206 (398)
T 2fyf_A          139 SKNPFVGEPIIITSDPGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGL----  206 (398)
T ss_dssp             HHCTTSCCCEEEECCTTCCCCC-----CCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTS----
T ss_pred             HHhCCCCceEEEecCCCCCCCc-----cccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCc----
Confidence            666  88999999874333332     267789999999999999999999999887   8999999999875443    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc------ccccCCCccC----CCCccCCCCC
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA------VTEWSGGLYV----SPTVAGSRPG  391 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~------~~~~~g~~~~----~~~~~gsr~~  391 (438)
                             +++..  ++|+++.++||++..|.|+|+++.+++.........      .+.+.++...    .....++.+.
T Consensus       207 -------~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  277 (398)
T 2fyf_A          207 -------PVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAI  277 (398)
T ss_dssp             -------CCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCH
T ss_pred             -------ccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCH
Confidence                   23322  479999999999555547898777654322110000      0001110000    0011122222


Q ss_pred             chHHHHHHHHHHHcHHH-HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          392 GLIAGAWAALMSLGQEG-YLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++++.++++.+...| +++..++..++++++.+.|+++|++++
T Consensus       278 ~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~  322 (398)
T 2fyf_A          278 ATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTP  322 (398)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCcee
Confidence            33556777887776666 899999999999999999999888764

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.79  E-value=1.3e-18  Score=174.74  Aligned_cols=225  Identities=15%  Similarity=0.087  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      +...++++++++++|.+..        +++++||+++..+++++.     .+|   ++|+++.+.|+++..+++..|.++
T Consensus       104 ~~~~~l~~~la~~~g~~~~--------i~~~sGt~a~~~~l~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~g~~~  167 (409)
T 3kki_A          104 YDKPMIEKRLAKFTGFDEC--------LLSQSGWNANVGLLQTIC-----QPN---TNVYIDFFAHMSLWEGARYANAQA  167 (409)
T ss_dssp             TTSCHHHHHHHHHHTCSEE--------EEESCHHHHHHHHHHHHC-----CTT---CEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHhCCCeE--------EEecchHHHHHHHHHHhc-----CCC---CEEEECCCcCHHHHHHHHHcCCeE
Confidence            4455677789999988642        566778899999999875     367   899999999999999999999999


Q ss_pred             EEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC-CC
Q 013675          251 WRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP-IP  328 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~-~p  328 (438)
                      +.++.     .|+++|++++++ ++++|++++++||+|.+.|+++|.++|++||+++++|++|+++....   .|.. ..
T Consensus       168 ~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~---~g~~~~~  239 (409)
T 3kki_A          168 HPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGP---NGAGLLA  239 (409)
T ss_dssp             EEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSG---GGCCHHH
T ss_pred             EEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCC---CCCcchh
Confidence            88875     589999999986 58999999999999999999999999999999999999997644310   0100 00


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      .++. ..++|+++.+.+|++ ++.| |+++.++ ++.+........+..        .++.+...++++.++++.+.  .
T Consensus       240 ~~~~-~~~~di~~~s~sK~~-~~~g-g~v~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~aa~~aal~~~~--~  305 (409)
T 3kki_A          240 ELGL-TREVHFMTASLAKTF-AYRA-GAIWCNN-EVNRCVPFISYPAIF--------SSTLLPYEAAGLETTLEIIE--S  305 (409)
T ss_dssp             HHTC-GGGCSEEEEESSSTT-CSSC-EEEEESS-SGGGTHHHHCHHHHH--------SBCCCHHHHHHHHHHHHHHH--H
T ss_pred             hcCC-CCCCCEEEeecchhh-CCCc-eEEEECH-HHHHHHHHhCcCccc--------cCCCcHHHHHHHHHHHHHHh--c
Confidence            0111 135789999999995 4444 7766654 433321111111100        00111122345555665442  2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .++..++..++++++.+.|+++ +++
T Consensus       306 ~~~~~~~~~~~~~~l~~~L~~~-g~~  330 (409)
T 3kki_A          306 ADNRRQHLDRMARKLRIGLSQL-GLT  330 (409)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT-TCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            2577788889999999999887 444

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.78  E-value=4.5e-18  Score=166.22  Aligned_cols=211  Identities=17%  Similarity=0.146  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHhC---CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          174 AEVIAMTAALLG---NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       174 ~~~~~~~a~l~g---~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      .++++.++++++   .++++    +  ++|+|+++++.++++++        |   ++|+++ ++|.++...++..|+++
T Consensus        59 ~~lr~~la~~~~~~~~~~~~----v--~~~~G~~~al~~~~~~~--------g---d~Vl~~-p~y~~~~~~~~~~g~~~  120 (335)
T 1uu1_A           59 EELIEKILSYLDTDFLSKNN----V--SVGNGADEIIYVMMLMF--------D---RSVFFP-PTYSCYRIFAKAVGAKF  120 (335)
T ss_dssp             HHHHHHHHHHHTCSSCCGGG----E--EEESSHHHHHHHHHHHS--------S---EEEECS-SSCHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHcCCCCCCHHH----E--EEcCChHHHHHHHHHHh--------C---CcEEEC-CCcHHHHHHHHHcCCeE
Confidence            456667888888   66654    6  89999999999999886        4   789999 99999999999999999


Q ss_pred             EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      +.+|+++++.+|++++     ++|++|++++|+||||.+.|.+++.++++.+| ++++|++|+++..   .      +..
T Consensus       121 ~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~---~------~~~  185 (335)
T 1uu1_A          121 LEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHG---E------SYV  185 (335)
T ss_dssp             EECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHC---C------CCG
T ss_pred             EEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcc---h------hHH
Confidence            9999987788898887     57899999999999999999999999999989 9999999986532   0      012


Q ss_pred             c-cCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675          331 D-FSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE  407 (438)
Q Consensus       331 ~-~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~  407 (438)
                      + ....+.+++..+++|+ ++++|  +|+++.+ +++.+........|            +.+....+++.++++.  .+
T Consensus       186 ~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~-~~~~~~l~~~~~~~------------~~~~~~~~~~~~~l~~--~~  249 (335)
T 1uu1_A          186 DFLKKYENLAVIRTFSKA-FSLAAQRVGYVVAS-EKFIDAYNRVRLPF------------NVSYVSQMFAKVALDH--RE  249 (335)
T ss_dssp             GGGGTCSSEEEEEESTTT-TTCGGGCCEEEEEC-HHHHHHHHHHSCTT------------CSCHHHHHHHHHHHHT--HH
T ss_pred             HHhhhCCCEEEEecchhh-cCCcccCeEEEEeC-HHHHHHHHHhcCCC------------CcCHHHHHHHHHHhCC--HH
Confidence            2 1234567889999999 45444  7998874 44433211111111            1111112233333432  24


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .+++..++..++++++.+.|+++ |++
T Consensus       250 ~~~~~~~~~~~~~~~l~~~L~~~-g~~  275 (335)
T 1uu1_A          250 IFEERTKFIVEERERMKSALREM-GYR  275 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CcE
Confidence            67788888999999999999876 444

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.78  E-value=6.7e-18  Score=168.93  Aligned_cols=241  Identities=12%  Similarity=0.095  Sum_probs=159.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeE--cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNM--TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~--t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      .|....+..++.+.+.+++....|.  ++++    +  ++  |+|||+|+.+++++++...  ++|   ++|+++.++|.
T Consensus        66 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~----i--~~v~t~G~~~al~~~~~~l~~~~--~~g---d~Vlv~~p~~~  134 (401)
T 7aat_A           66 EYLPIAGLADFTRASAELALGENSEAFKSGR----Y--VTVQGISGTGSLRVGANFLQRFF--KFS---RDVYLPKPSWG  134 (401)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----E--EEEEEEHHHHHHHHHHHHHHHHC--TTC---CEEEEEESCCT
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCccccccCc----e--EEEecCcchHHHHHHHHHHHHhc--cCC---CEEEEcCCCch
Confidence            3444455566666666666544443  2444    5  55  9999999999988875321  256   89999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          238 AYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      .+...++..|.+++.+|++  +++.+|++++++.+.   ++++++++++|+||||.+.+   +++|+++|++||+++++|
T Consensus       135 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D  214 (401)
T 7aat_A          135 NHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFD  214 (401)
T ss_dssp             THHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEc
Confidence            9999999999999999985  378999997777765   57899999999999997755   788999999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCc--cCCCCccEEEeCCCCCCCCCCC--cEEEEEe--ccccc----ccchhcccccCCCc
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFD--FSVQGVTSISVDVHKYGLAPKG--TSVVLYR--NREIR----KHQFVAVTEWSGGL  379 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~--~~~~gvdsis~s~hK~~~~p~g--~g~l~~r--~~~~~----~~~~~~~~~~~g~~  379 (438)
                      .+|+++...-.. ..  .+.+.  .....-.+++.+++|. ++++|  +|+++..  +++..    .........+..  
T Consensus       215 eay~~~~~~~~~-~~--~~~~~~~~~~~~~~i~~~S~sK~-~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--  288 (401)
T 7aat_A          215 MAYQGFASGDIN-RD--AWALRHFIEQGIDVVLSQSYAKN-MGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYS--  288 (401)
T ss_dssp             ESCTTTTTSCHH-HH--THHHHHHHHTTCCCEEEEECTTT-SCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHS--
T ss_pred             cccccccCCCcc-cc--HHHHHHHHhcCCcEEEEecCCcc-cccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccC--
Confidence            999766531000 00  00010  0122346788999999 56555  7887762  33311    111100000000  


Q ss_pred             cCCCCccCCCCCchHHHHHHHHHHH--c------HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          380 YVSPTVAGSRPGGLIAGAWAALMSL--G------QEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       380 ~~~~~~~gsr~~~~ia~~~aal~~~--g------~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                              ..+   ..++.++...+  +      .+.+++..++..++++++.+.|+++
T Consensus       289 --------~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T 7aat_A          289 --------NPP---MNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             --------SCC---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --------CCC---hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    000   11222222222  1      3446777788889999999999876

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.78  E-value=5e-18  Score=170.71  Aligned_cols=228  Identities=16%  Similarity=0.123  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHH--hhcC
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAA--QYFN  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~--~~~G  247 (438)
                      .+++..++++++++|.+...       ++++|||+|+..+++++.     ++|   ++|+++.++|.+ +...+  ...|
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~-------v~~~~Gs~a~~~al~~~~-----~~g---d~Vi~~~~~~~~~~~~~~~~~~~g  142 (425)
T 3ecd_A           78 EVEALAIERVKRLFNAGHAN-------VQPHSGAQANGAVMLALA-----KPG---DTVLGMSLDAGGHLTHGAKPALSG  142 (425)
T ss_dssp             HHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHC-----CTT---CEEEEECC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCce-------eecCchHHHHHHHHHHcc-----CCC---CEEEEcccccccceecchhhhhcc
Confidence            34555557888999987642       568999999999998874     367   899999999988 22222  2445


Q ss_pred             c--EEEEeeCCC-CCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          248 I--KLWRVPVDK-EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       248 i--~v~~v~~~~-~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      .  +++.++.++ ++.+|+++|+++++ ++|++|++++|+|  |...++++|.++|++||+++|+|++++.+...    .
T Consensus       143 ~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~----~  216 (425)
T 3ecd_A          143 KWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIA----A  216 (425)
T ss_dssp             --CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHH----T
T ss_pred             cceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhh----c
Confidence            4  556666664 68899999999997 5899999998877  67899999999999999999999996544331    1


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS  403 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~  403 (438)
                      +.   ... ....+|+++.++||++.+|. .|+++.+++.+.........  .       ...++.....++++.+++..
T Consensus       217 ~~---~~~-~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~a~~~a~~~  282 (425)
T 3ecd_A          217 GR---HAN-PVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVF--P-------GLQGGPLMHVIAGKAVAFGE  282 (425)
T ss_dssp             TS---SCC-GGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHH
T ss_pred             cc---ccC-chhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhC--c-------cccCCccHHHHHHHHHHHHH
Confidence            11   011 11237899999999975665 58877775544332111100  0       11112222334566667666


Q ss_pred             HcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          404 LGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       404 ~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ...+++++..++..++++++.+.|++. |++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  312 (425)
T 3ecd_A          283 ALTDDFKTYIDRVLANAQALGDVLKAG-GVD  312 (425)
T ss_dssp             HTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence            666788899999999999999999874 544

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.78  E-value=2e-18  Score=169.91  Aligned_cols=220  Identities=13%  Similarity=0.053  Sum_probs=148.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC--eEEecCCCcCcHHH---HHhhcCcE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDK---AAQYFNIK  249 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~--~Viv~~~~h~s~~~---a~~~~Gi~  249 (438)
                      ++++++++++|.+.        .++++|||+|+.++++++..     +|   +  +|+++...|++...   .+...|++
T Consensus        51 ~l~~~la~~~~~~~--------~i~~~~G~~a~~~al~~~~~-----~g---d~~~vi~~~~~~~~~~~~~~~~~~~g~~  114 (357)
T 3lws_A           51 PFEQKFADVLGMDD--------AVFFPSGTMAQQVALRIWSD-----ET---DNRTVAYHPLCHLEIHEQDGLKELHPIE  114 (357)
T ss_dssp             HHHHHHHHHHTCSE--------EEEESCHHHHHHHHHHHHHH-----HH---TCCEEEECTTCHHHHSSTTHHHHHSSCE
T ss_pred             HHHHHHHHHhCCCc--------EEEecCcHHHHHHHHHHHhh-----cC---CCcEEEecccceeeeeccchhhhccCcE
Confidence            44457888888753        26779999999999988764     33   4  78888888877654   45566999


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCC-ccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH-GIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGY  325 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~t-G~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~  325 (438)
                      ++.+|. +++.+|+++++++.  ++++|++++|+||+ |.+.+   +++|+++|++||+++|+|++|......+   .+.
T Consensus       115 ~~~v~~-~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~---~~~  188 (357)
T 3lws_A          115 TILVGA-ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPY---YEK  188 (357)
T ss_dssp             EEECSC-TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH---HTC
T ss_pred             EEEecC-CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhh---cCC
Confidence            998885 46789999999984  38999999999998 98875   8899999999999999999986322221   111


Q ss_pred             CCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc-hHHHHHHHHHHH
Q 013675          326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG-LIAGAWAALMSL  404 (438)
Q Consensus       326 ~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~-~ia~~~aal~~~  404 (438)
                         +......++|+++.++||++.+|.| |+++. ++++.+........+.+.         .+... ..++..++++. 
T Consensus       189 ---~~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~-  253 (357)
T 3lws_A          189 ---TAAEIAGLFDSIYISFYKGLGGIAG-AILAG-PAAFCQTARIWKRRYGGD---------LISLYPYIVSADYYYEL-  253 (357)
T ss_dssp             ---CHHHHHTTSSEEEEESSSTTCCSSC-EEEEE-CHHHHHHHHHHHHHTTCC---------CSCCHHHHHHHHHHHHH-
T ss_pred             ---ChHHHHhcCCEEEEeccccCCCCce-EEEEc-CHHHHHHHHHHHHHhcCC---------cccchHHHHHHHHHHHH-
Confidence               1111113568889999999668887 77554 454443321111111111         11111 11122233322 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          405 GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       405 g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                          ..+..++..++++++.+.|+++|++++
T Consensus       254 ----~~~~~~~~~~~~~~l~~~L~~~~g~~~  280 (357)
T 3lws_A          254 ----RKDRMGQYYEQAKQLAEQFNALPGVHT  280 (357)
T ss_dssp             ----HTTCHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence                344455667889999999999998876

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.78  E-value=4.8e-18  Score=173.10  Aligned_cols=236  Identities=14%  Similarity=0.150  Sum_probs=154.9

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC-----CCCCCCccceeE--cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK-----EKASGGQVCGNM--TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS  234 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~-----~~~~~~~v~g~~--t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~  234 (438)
                      .|...++..++.+++.+++   +|.+     +++    +  ++  |+|||+|+.+++.....   ..+|   ++|+++.+
T Consensus        89 ~Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~----i--~~~~t~ggt~al~l~~~~~~~---~~~g---d~Vlv~~p  153 (448)
T 3meb_A           89 EYPPVAGFPLFLEAAQFLM---FGKDSKAAQEGR----I--ASCQSLSGTGSLHIGFEFLHL---WMPK---AEFYMPST  153 (448)
T ss_dssp             SCCCTTCCHHHHHHHHHHH---HCTTCHHHHTTC----E--EEEEESHHHHHHHHHHHHHHH---HCTT---CCEEEESS
T ss_pred             CCCCCcchHHHHHHHHHHh---cCCCccccCcCc----E--EEEECCcHHHHHHHHHHHHHH---hCCC---CEEEECCC
Confidence            3444455555555444443   3766     344    6  77  99999999885443221   1266   89999999


Q ss_pred             CcCcHHHHHh----hcCcEEEEeeC-CCC--CccCHHHHHHhhcc---CcEEEEEecCCCCCccccC---HHHHHHHHHH
Q 013675          235 AHSAYDKAAQ----YFNIKLWRVPV-DKE--FRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP---IQELGELALS  301 (438)
Q Consensus       235 ~h~s~~~a~~----~~Gi~v~~v~~-~~~--~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd---i~~I~~la~~  301 (438)
                      +|.++...++    ..|++++.+|+ +++  +.+|++++++++++   +++++++++|+||||.+.+   +++|+++|++
T Consensus       154 ~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~  233 (448)
T 3meb_A          154 TWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKE  233 (448)
T ss_dssp             CCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            9999999999    99999999998 654  89999999999984   5889999999999999977   5569999999


Q ss_pred             cCCeEEEeccccchhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCCCCCC--cEEE--EE--------ecc----c
Q 013675          302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGLAPKG--TSVV--LY--------RNR----E  363 (438)
Q Consensus       302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~~p~g--~g~l--~~--------r~~----~  363 (438)
                      ||+++++|++|+++...-... .  .+.++ + ....-.+++.++||. ++++|  +|++  +.        .++    .
T Consensus       234 ~~~~li~Deay~~~~~~~~~~-~--~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~  309 (448)
T 3meb_A          234 KKHIAFFDSAYQGFATGSFEA-D--AFAVRMFVDAGVEVLVAQSFSKN-FGLYGERIGCLHVVHAGVEGSVEKNKALSAA  309 (448)
T ss_dssp             HTCEEEEEESCTTTSSSCHHH-H--THHHHHHHHTTCCEEEEEECTTT-SCCGGGCCEEEEEECCCCSSSHHHHHHHHHH
T ss_pred             CCCEEEEecccccccCCCccc-C--chhHHHHhhcCCcEEEEeccccc-CCCccccceeeeeeeccccccccCCHHHHHH
Confidence            999999999998765310000 0  00000 0 111224668899999 56555  7887  44        343    2


Q ss_pred             ccccchh-cccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH--------HHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          364 IRKHQFV-AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ--------EGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       364 ~~~~~~~-~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~--------~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +...... ....|.              .....+++++...+..        +.+++..++..++++++.+.|+++
T Consensus       310 l~~~l~~~~~~~~~--------------~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  371 (448)
T 3meb_A          310 MVSGMTLQIRKTWS--------------MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR  371 (448)
T ss_dssp             HHHHHHHHHHTTTS--------------SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccC--------------CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2211110 000110              0112233333333322        346777888899999999999876

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.78  E-value=1.2e-18  Score=170.73  Aligned_cols=166  Identities=22%  Similarity=0.213  Sum_probs=123.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---HHhhcCcEEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---AAQYFNIKLW  251 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---a~~~~Gi~v~  251 (438)
                      ++++.+++++|.+.      +  ++++|||+|+.++++++.     ++|   ++|+++.++|.+...   .+...|++++
T Consensus        42 ~l~~~la~~~g~~~------~--~~~~~gt~a~~~~~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~~~~g~~~~  105 (347)
T 1jg8_A           42 ELERLAAETFGKEA------A--LFVPSGTMGNQVSIMAHT-----QRG---DEVILEADSHIFWYEVGAMAVLSGVMPH  105 (347)
T ss_dssp             HHHHHHHHHHTCSE------E--EEESCHHHHHHHHHHHHC-----CTT---CEEEEETTCHHHHSSTTHHHHHTCCEEE
T ss_pred             HHHHHHHHHhCCce------E--EEecCcHHHHHHHHHHhc-----CCC---CEEEEcCcchhhhccccchhhccCeEEE
Confidence            45567888888752      3  789999999999888764     367   899999999977543   5777899999


Q ss_pred             EeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCC-ccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          252 RVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPH-GIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~t-G~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      .+ .++++.+|+++++++|++      +|++|++++|+||+ |.+.|   +++|.++|+++|+++++|+++.-+...   
T Consensus       106 ~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~---  181 (347)
T 1jg8_A          106 PV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASI---  181 (347)
T ss_dssp             EE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHH---
T ss_pred             Ee-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchh---
Confidence            88 556788999999999985      68999999999999 99866   578899999999999999986421111   


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR  365 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~  365 (438)
                      ..+.   +......++|++++++||++.+|.  |++++.++++.
T Consensus       182 ~~~~---~~~~~~~~~d~~~~s~sK~l~~~~--G~~~~~~~~~~  220 (347)
T 1jg8_A          182 ASGV---PVKEYAGYADSVMFCLSKGLCAPV--GSVVVGDRDFI  220 (347)
T ss_dssp             HHCC---CHHHHHHTCSEEEEESSSTTCCSS--CEEEEECHHHH
T ss_pred             hcCC---ChHHhcccccEEEEecccccCCCc--eEEEEcCHHHH
Confidence            0111   111112357888889999966664  44445555443

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.78  E-value=3.2e-18  Score=168.50  Aligned_cols=223  Identities=14%  Similarity=0.107  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCe--EEecCCCcCcHHH---HHhhcC
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPE--MIIPVSAHSAYDK---AAQYFN  247 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~--Viv~~~~h~s~~~---a~~~~G  247 (438)
                      ..++++++++++|.+..        ++++|||+|+.++++++..     +|   ++  |+++.+.|+....   .+...|
T Consensus        50 ~~~l~~~la~~~~~~~~--------i~~~~g~~a~~~a~~~~~~-----~g---~~~vvi~~~~~~~~~~~~~~~~~~~g  113 (359)
T 3pj0_A           50 IEDFETKIAKILGKQSA--------VFFPSGTMAQQIALRIWAD-----RK---ENRRVAYHPLSHLEIHEQDGLKELQQ  113 (359)
T ss_dssp             HHHHHHHHHHHHTCSEE--------EEESCHHHHHHHHHHHHHH-----HH---TCCEEEECTTCHHHHSSTTHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCcE--------EEeCCHHHHHHHHHHHHHh-----cC---CCcEEEEeccceeeehhcchHHHhcC
Confidence            44566678999988642        6779999999999998874     33   44  6677777766543   235569


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCC-ccccCHHH---HHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH-GIIDPIQE---LGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~t-G~iddi~~---I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      ++++.+|. +++.+|+++|+++ .++|++|++++|+||+ |.+.|.++   |+++|++||+++|+|+++..+..++   .
T Consensus       114 ~~~~~v~~-~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~---~  188 (359)
T 3pj0_A          114 ITPLLLGT-ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPF---Y  188 (359)
T ss_dssp             CEEEECSC-TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHH---H
T ss_pred             ceEEecCC-cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhh---h
Confidence            99999987 5789999999999 7889999999999888 78877554   5999999999999999986544321   1


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc-hHHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG-LIAGAWAALM  402 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~-~ia~~~aal~  402 (438)
                      +.  +..++. .++|+++.++||++.+|.| |++ +.++++.+........+.+..         .... ..++..+++.
T Consensus       189 ~~--~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~-~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~a~~~~l~  254 (359)
T 3pj0_A          189 QK--SAEEIC-ALFDSVYVSFYKGIGGIAG-AIL-AGNDDFVQEAKIWKRRYGGDL---------ISLYPYILSADYYFE  254 (359)
T ss_dssp             TC--CHHHHH-TTCSEEEEESSSTTCCSSC-EEE-EECHHHHHHHHHHHHHTTCCC---------SCCHHHHHHHHHHHH
T ss_pred             CC--CHHHhh-ccCCEEEEeccccCCCcce-EEE-ECCHHHHHHHHHHHHHhCCCc---------chhHHHHHHHHHHHH
Confidence            11  111111 4678999999998777765 654 445554433211111111110         1111 1112222332


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .     ..+..++..++++++.+.|+++|++++
T Consensus       255 ~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~  282 (359)
T 3pj0_A          255 K-----RIGKMAEYFEAAKGLAERFNSCSGVKT  282 (359)
T ss_dssp             H-----HGGGHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             H-----HHHHhHHHHHHHHHHHHHHhhCCCcee
Confidence            1     235566678889999999999988875

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.78  E-value=1.4e-17  Score=169.58  Aligned_cols=238  Identities=14%  Similarity=0.050  Sum_probs=153.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCc-CcHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH-SAYDK  241 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h-~s~~~  241 (438)
                      +...++..+++    +.+++++|.+  +    +  ++|+|||+|+.++++++.     ++|   +  +++.++| .++..
T Consensus        71 y~~~~~~~~l~----~~la~~~~~~--~----~--~~~~~gt~a~~~al~~l~-----~~g---d--i~~~~~~~~~~~~  128 (456)
T 2ez2_A           71 YAGSENFYHLE----RTVQELFGFK--H----I--VPTHQGRGAENLLSQLAI-----KPG---Q--YVAGNMYFTTTRY  128 (456)
T ss_dssp             SSSCHHHHHHH----HHHHHHHCCS--E----E--EEESSHHHHHHHHHHHHC-----CTT---C--EEEESSCCHHHHH
T ss_pred             cccChhHHHHH----HHHHHHhCCC--c----E--EEeCCcHHHHHHHHHHhC-----CCC---C--EeccccccchhHH
Confidence            33455555544    4678888865  2    4  899999999999998874     366   6  7777788 77788


Q ss_pred             HHhhcCcEEEEeeCCC----------CCccCHHHHHHhhccCc----EEEEEecCCC-CCccccC---HHHHHHHHHHcC
Q 013675          242 AAQYFNIKLWRVPVDK----------EFRADVKAIKKYINRNT----VLIVGSAPGF-PHGIIDP---IQELGELALSHG  303 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~----------~~~~d~~~Le~~I~~~t----~~vv~~~~~~-~tG~idd---i~~I~~la~~~~  303 (438)
                      ++...|++++.+++++          ++.+|+++|+++|+++|    ++|++++|+| |+|.+.|   +++|+++|++||
T Consensus       129 ~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~  208 (456)
T 2ez2_A          129 HQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHG  208 (456)
T ss_dssp             HHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcC
Confidence            9999999999999873          26899999999998766    8999999998 9999877   999999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCcc------CCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDF------SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG  377 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~------~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g  377 (438)
                      +++|+|++|+.+...|....+.......+      .....|++++++||++..| ..|+++.+++++.+........+.+
T Consensus       209 i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~  287 (456)
T 2ez2_A          209 IKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEG  287 (456)
T ss_dssp             CCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccC
Confidence            99999999975321111110000000000      0122588888899996544 4687777555554322111111111


Q ss_pred             CccCCCCccCCCCCchHHH-HHHHHHHHcHHHH-HHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          378 GLYVSPTVAGSRPGGLIAG-AWAALMSLGQEGY-LENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       378 ~~~~~~~~~gsr~~~~ia~-~~aal~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .    .+..|... ..+.+ ..+.+     +.+ ++..++..++++++.+.|++. |++
T Consensus       288 ~----~~~~~~~~-~~~~a~a~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  335 (456)
T 2ez2_A          288 M----PSYGGLAG-RDMEAMAIGLR-----EAMQYEYIEHRVKQVRYLGDKLKAA-GVP  335 (456)
T ss_dssp             C----TTTTTCCH-HHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             c----ccccCcch-hHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence            0    01111111 12222 22222     233 456667777888898888874 543

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.78  E-value=1e-17  Score=170.70  Aligned_cols=228  Identities=16%  Similarity=0.130  Sum_probs=159.9

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHH--H
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKA--A  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a--~  243 (438)
                      +....+++..++++++++|.+...       +++++||+|+..+++++++     +|   ++|+++.+.|.+ +...  .
T Consensus        87 ~~~~~~e~~a~~~la~~~g~~~~~-------v~~~sGs~a~~~a~~~~~~-----~G---d~Vl~~~~~~~~~~~~~~~~  151 (447)
T 3h7f_A           87 EHVDVVENLARDRAKALFGAEFAN-------VQPHSGAQANAAVLHALMS-----PG---ERLLGLDLANGGHLTHGMRL  151 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHCC-----TT---CEEEEECGGGTCCGGGTCTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCceE-------EEeCCHHHHHHHHHHHhcC-----CC---CEEEecCcccccccchhhhh
Confidence            334455555558999999998642       4588899999999998763     77   899999999877 2211  1


Q ss_pred             hh--cCcEEEEeeCCC-CCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          244 QY--FNIKLWRVPVDK-EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       244 ~~--~Gi~v~~v~~~~-~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ..  .+..++.+++++ ++.+|+++++++++ .++++|+++.+++|++.  |+++|+++|++||+++|+|+++...... 
T Consensus       152 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~-  228 (447)
T 3h7f_A          152 NFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVA-  228 (447)
T ss_dssp             SHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHH-
T ss_pred             hhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhc-
Confidence            22  245677777774 78899999999996 47889999899998876  9999999999999999999997543321 


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA  399 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a  399 (438)
                         .|. .  .+ ...++|+++.++||++.+|.| |+++.++ ++.+.......         +...|+.....++++.+
T Consensus       229 ---~g~-~--~~-~~~~~di~~~s~sK~l~G~~g-G~i~~~~-~~~~~l~~~~~---------~~~~~~~~~~~~~a~~~  290 (447)
T 3h7f_A          229 ---AGL-H--PS-PVPHADVVSTTVHKTLGGGRS-GLIVGKQ-QYAKAINSAVF---------PGQQGGPLMHVIAGKAV  290 (447)
T ss_dssp             ---TTS-S--CC-STTTCSEEEEESSGGGCCCSC-EEEEECG-GGHHHHHHHHT---------TTTCSSCCHHHHHHHHH
T ss_pred             ---CCC-C--CC-CCCCCcEEEecCCcCCCCCCe-EEEEECH-HHHHHHhhhcC---------CcccCCccHHHHHHHHH
Confidence               121 1  11 124679999999999767776 8876654 33322111100         01112222233556667


Q ss_pred             HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++.....+++++..++..++++++.+.|++.
T Consensus       291 a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (447)
T 3h7f_A          291 ALKIAATPEFADRQRRTLSGARIIADRLMAP  321 (447)
T ss_dssp             HHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7766556678899999999999999999875

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.77  E-value=5.7e-18  Score=171.25  Aligned_cols=236  Identities=11%  Similarity=0.057  Sum_probs=159.9

Q ss_pred             chhHHHHHHHHHHHHHHHh-CCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675          166 FQSVARFEAEVIAMTAALL-GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~-g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~  244 (438)
                      .++..++++.+.+++.+.. +.++++ ...+  ++|+|||+|+.++++++.     .+|   ++|+++.+.|.++...++
T Consensus        87 ~~g~~~lr~~ia~~~~~~~~~~~~~~-~~~i--~~t~g~~~al~~~~~~l~-----~~g---d~Vl~~~p~y~~~~~~~~  155 (430)
T 2x5f_A           87 PQGIEELRDLWQQKMLRDNPELSIDN-MSRP--IVTNALTHGLSLVGDLFV-----NQD---DTILLPEHNWGNYKLVFN  155 (430)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCCGGG-BCCC--EEESHHHHHHHHHHHHHC-----CTT---CEEEEESSCCTHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHhccCcccCCCc-cceE--EEcCCchHHHHHHHHHHh-----CCC---CEEEEcCCcCccHHHHHH
Confidence            3455666776666665542 444321 0004  899999999999999875     367   899999999999999999


Q ss_pred             h-cCcEEEEeeCCC-CCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC---HHHHHHHHHH-----cCCeEEEecc
Q 013675          245 Y-FNIKLWRVPVDK-EFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP---IQELGELALS-----HGTCLHVDLC  311 (438)
Q Consensus       245 ~-~Gi~v~~v~~~~-~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd---i~~I~~la~~-----~~i~lhVD~a  311 (438)
                      . .|++++.+|+++ ++.+|+++|++++++   +++++++++|+||||.+.|   +++|+++|++     +|+++++|++
T Consensus       156 ~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~  235 (430)
T 2x5f_A          156 TRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDA  235 (430)
T ss_dssp             TTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECT
T ss_pred             HhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehh
Confidence            9 999999999876 578999999999987   8999999999999999988   8899999999     9999999999


Q ss_pred             ccchhhhhhhhcCCCCCCC--ccC-CCCc---cEEEeCCCCCCCCCCC--cEEEEE--ecccccccchhcccc-cCCCcc
Q 013675          312 LGGFVLPFAKKLGYPIPPF--DFS-VQGV---TSISVDVHKYGLAPKG--TSVVLY--RNREIRKHQFVAVTE-WSGGLY  380 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~--~~~-~~gv---dsis~s~hK~~~~p~g--~g~l~~--r~~~~~~~~~~~~~~-~~g~~~  380 (438)
                      |+++...     |...+++  ++. ..+.   +++..++||++ +++|  +|+++.  +++++.+........ ....  
T Consensus       236 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~--  307 (430)
T 2x5f_A          236 YYGLFYE-----DVYTQSLFTALTNLHSNAILPIRLDGATKEF-FAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSN--  307 (430)
T ss_dssp             TTTCBCS-----SSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT-TCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTT--
T ss_pred             cccccCC-----cccchHHHHHHhhccCCcceEEEEEecccCC-CCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcc--
Confidence            9876431     1001111  221 1334   67788999994 5445  799887  234443321111000 0000  


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHc-----HHHHHHHHHHHHHHHHHHHHHhh
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLG-----QEGYLENTKAIMEVSESIQKGLV  428 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g-----~~g~~~~~~~~~~~a~~l~~~L~  428 (438)
                           .++-+   ..+++++...+.     .+.+++..++..++++++.+.|+
T Consensus       308 -----~~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  352 (430)
T 2x5f_A          308 -----ISSGP---LPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVY  352 (430)
T ss_dssp             -----TSSCC---HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----cCCCC---hHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 00111   123333333332     12233477788888999999998

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.77  E-value=1e-17  Score=169.35  Aligned_cols=171  Identities=16%  Similarity=0.082  Sum_probs=131.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHH--HHHHHHHHHHHH-------HhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESI--LLAVKSSRDYMR-------NKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~--~~al~a~~~~~~-------~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      ++++.+++++++++++    +  ++|+|+++++  .++++++.+...       ..+|   ++|+++.++|..+...++.
T Consensus        82 ~lr~~ia~~~~~~~~~----i--~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~g---d~V~v~~p~y~~~~~~~~~  152 (427)
T 3ppl_A           82 DIRQIWADLLGVPVEQ----V--LAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEET---VKWICPVPGYDRHFSITER  152 (427)
T ss_dssp             HHHHHHHHHHTSCGGG----E--EECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSC---CEEEEEESCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcce----E--EEeCCcHHHHHHHHHHHHHhccCCcccccccCCCC---CEEEEcCCCcHHHHHHHHH
Confidence            3445677777888776    6  8999999999  477777652000       0015   8999999999999999999


Q ss_pred             cCcEEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEe-cCCCCCccccCHH---HHHHHH-HHcCCeEEEeccccchhhhh
Q 013675          246 FNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGS-APGFPHGIIDPIQ---ELGELA-LSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       246 ~Gi~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~-~~~~~tG~iddi~---~I~~la-~~~~i~lhVD~a~gg~~~pf  319 (438)
                      .|++++.+|+++++ +|+++|+++++ +++++|+++ +++||||.+.|.+   +|+++| +++|+++|+|++|+.+... 
T Consensus       153 ~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~-  230 (427)
T 3ppl_A          153 FGFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLT-  230 (427)
T ss_dssp             TTCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSS-
T ss_pred             cCCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccC-
Confidence            99999999998765 99999999995 678888765 8899999998877   888888 9999999999999864321 


Q ss_pred             hhhcCCCCCCCcc-------CCCCccEEEeCCCCCCCCCCCcEEEEEe
Q 013675          320 AKKLGYPIPPFDF-------SVQGVTSISVDVHKYGLAPKGTSVVLYR  360 (438)
Q Consensus       320 ~~~~g~~~p~~~~-------~~~gvdsis~s~hK~~~~p~g~g~l~~r  360 (438)
                        ..+  .++.+.       ...+.+++..+++|++..+.++|+++.+
T Consensus       231 --~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~  274 (427)
T 3ppl_A          231 --DEF--PEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTS  274 (427)
T ss_dssp             --SCC--CCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECC
T ss_pred             --CCC--CCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcC
Confidence              111  111111       1345688899999996667789987665

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.77  E-value=4.3e-18  Score=171.08  Aligned_cols=245  Identities=11%  Similarity=0.079  Sum_probs=158.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeE--cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNM--TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~--t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      |...++..++.+.+.+++.+..|.  ++++    +  ++  |+||++|+.++++.++..   .+|   ++|+++.++|++
T Consensus        69 y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~----i--~~~~t~g~~~a~~~~~~~~~~~---~~g---d~Vl~~~p~~~~  136 (412)
T 1yaa_A           69 YLGITGLPSLTSNAAKIIFGTQSDALQEDR----V--ISVQSLSGTGALHISAKFFSKF---FPD---KLVYLSKPTWAN  136 (412)
T ss_dssp             CCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----E--EEEEEEHHHHHHHHHHHHHHHH---CTT---CCEEEEESCCTT
T ss_pred             CCCCCCcHHHHHHHHHHHhcCCCCCCCcce----E--EEEeccchHhHHHHHHHHHHHh---CCC---CEEEEeCCCCcc
Confidence            434455666666666665444342  3444    6  78  999999999986554321   256   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeC-CC-CCccCHHHHHHhhccC---cEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEec
Q 013675          239 YDKAAQYFNIKLWRVPV-DK-EFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL  310 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~-~~-~~~~d~~~Le~~I~~~---t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~  310 (438)
                      +...++..|++++.+|+ ++ ++.+|+++|+++++++   +.++++++|+||||.+.+   +++|+++|++||+++++|+
T Consensus       137 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De  216 (412)
T 1yaa_A          137 HMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDT  216 (412)
T ss_dssp             HHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence            99999999999999998 54 7889999999999764   566666999999999966   6688999999999999999


Q ss_pred             cccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCC--cEEEE--E----eccc----ccccchh-ccccc
Q 013675          311 CLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKG--TSVVL--Y----RNRE----IRKHQFV-AVTEW  375 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g--~g~l~--~----r~~~----~~~~~~~-~~~~~  375 (438)
                      +|+++...-......++..++.....  .+++..+++|. ++|.|  +|+++  .    ++++    +...... ....|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  295 (412)
T 1yaa_A          217 AYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKN-AGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEV  295 (412)
T ss_dssp             SCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTT-SCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCC-CCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            99765321000000000001101111  35778889998 57766  68876  4    1443    3221111 00011


Q ss_pred             CCCccCCCCccCCCCCchHHHHHHHHHHHc-----HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          376 SGGLYVSPTVAGSRPGGLIAGAWAALMSLG-----QEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       376 ~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      .           +-+....+++..++....     .+++++..++..++++++.+.|++++
T Consensus       296 ~-----------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1yaa_A          296 S-----------NPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG  345 (412)
T ss_dssp             S-----------SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             C-----------CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            0           001111222333333221     24677888888999999999998764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.76  E-value=3.3e-17  Score=162.23  Aligned_cols=219  Identities=15%  Similarity=0.119  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH-hcCCCCCeEEecCCCcCcHHHHHhhcCc---
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSAHSAYDKAAQYFNI---  248 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~-~~G~~~~~Viv~~~~h~s~~~a~~~~Gi---  248 (438)
                      ..++++++++++|.+ ++    +  ++|+|||+|+.+++++++..... .+|  +++|+++.++|..+...+...+.   
T Consensus        72 ~~~l~~~la~~~g~~-~~----v--~~~~g~t~a~~~~~~~~~~~~~~~~~g--~~~vl~~~~~y~~~~~~~~~~~~~~~  142 (375)
T 2eh6_A           72 QEELAHKLVKHFWTE-GK----V--FFANSGTESVEAAIKLARKYWRDKGKN--KWKFISFENSFHGRTYGSLSATGQPK  142 (375)
T ss_dssp             HHHHHHHHHHTSSSC-EE----E--EEESSHHHHHHHHHHHHHHHHHHTTCC--CCEEEEEBTCCCCSSHHHHHHCBCGG
T ss_pred             HHHHHHHHHhhcCCC-Ce----E--EEeCchHHHHHHHHHHHHHHhccCCCC--CCEEEEECCCcCCCchhhhhhcCCcc
Confidence            345667899999984 43    5  89999999999999875432210 123  37899999886665444433321   


Q ss_pred             -----E-----EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccc
Q 013675          249 -----K-----LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       249 -----~-----v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                           .     +..+|.     .|+++|++++++++++|++++++||||.+.|    +++|.++|++||+++|+|++|++
T Consensus       143 ~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~  217 (375)
T 2eh6_A          143 FHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTG  217 (375)
T ss_dssp             GTTTTCSCCSSEEEECT-----TCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             ccCCCCCCCCCceeCCC-----chHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccC
Confidence                 1     334432     4899999999999999999999999999987    99999999999999999999986


Q ss_pred             hhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          315 FVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      +...     +.   .++....+  .|++++|  |++.+|.++|+++.+++ +.+....   ...+.     +. +. +..
T Consensus       218 ~~~~-----~~---~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~-~~~~~~~---~~~~~-----~~-~~-~~~  276 (375)
T 2eh6_A          218 IGRT-----GE---FYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREE-VAQSFTP---GSHGS-----TF-GG-NPL  276 (375)
T ss_dssp             TTTT-----SS---SSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHH-HHTTCCT---TSCCC-----SS-TT-CHH
T ss_pred             CCCC-----Cc---chhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHH-HHhhhcC---CCCCC-----CC-CC-CHH
Confidence            4321     10   12223334  6888777  77567788999888753 3221100   00011     01 11 111


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      ..+++.++++.+     .+..++..++++++.+.|++++
T Consensus       277 ~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~  310 (375)
T 2eh6_A          277 ACRAGTVVVDEV-----EKLLPHVREVGNYFKEKLKELG  310 (375)
T ss_dssp             HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence            112223334332     2677888889999999998764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.76  E-value=1.3e-17  Score=166.26  Aligned_cols=240  Identities=12%  Similarity=0.092  Sum_probs=158.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeE--cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675          163 LDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNM--TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~--t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      |...++..++++.+.+++.+..+  .++++    +  ++  |+|||+|+.+++++++..   .+|   ++|+++.++|+.
T Consensus        65 y~~~~g~~~lr~~la~~~~~~~~~~~~~~~----v--~~~~~~g~~~a~~~~~~~~~~~---~~g---d~Vl~~~p~y~~  132 (396)
T 2q7w_A           65 YLGIDGIPEFGRCTQELLFGKGSALINDKR----A--RTAQTPGGTGALRVAADFLAKN---TSV---KRVWVSNPSWPN  132 (396)
T ss_dssp             CCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----E--EEEEESHHHHHHHHHHHHHHHH---SCC---CEEEEEESCCTH
T ss_pred             CCCCCCCHHHHHHHHHHHhcCCCCcccccc----E--EEEecccchhhHHHHHHHHHHh---CCC---CEEEEcCCCchh
Confidence            43345555666655555432212  12444    5  66  999999999999876531   266   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEec
Q 013675          239 YDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL  310 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~  310 (438)
                      +...++..|.+++.+|.+  +++.+|++++++++++   +++++++++|+||||.+.+   +++|+++|++||+++++|+
T Consensus       133 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De  212 (396)
T 2q7w_A          133 HKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDF  212 (396)
T ss_dssp             HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence            999999999999999985  5788999999999975   4788999999999999876   5689999999999999999


Q ss_pred             cccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEE--eccc----ccccchh-cccccCCCccC
Q 013675          311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLY--RNRE----IRKHQFV-AVTEWSGGLYV  381 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~--r~~~----~~~~~~~-~~~~~~g~~~~  381 (438)
                      +|+++...- ...+..+..++. ....++++.+++|. +++.|  +|+++.  .+++    +...... ....|.     
T Consensus       213 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  284 (396)
T 2q7w_A          213 AYQGFARGL-EEDAEGLRAFAA-MHKELIVASSYSXN-FGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYS-----  284 (396)
T ss_dssp             SCTTSSSCH-HHHTHHHHHHHH-HCSCEEEEEECTTT-TTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTS-----
T ss_pred             ccccccCCc-cchhHHHHHHHh-cCCcEEEEEecccc-ccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccC-----
Confidence            998754300 000000000111 11235778899998 56556  698876  2332    2211100 000110     


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHc--------HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                               +....++.++...+.        .+.+++..++..++++++.+.|+++.
T Consensus       285 ---------~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  333 (396)
T 2q7w_A          285 ---------NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             ---------SCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             ---------CCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                     001223333333332        24667778888899999999998874

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.76  E-value=5.5e-18  Score=170.18  Aligned_cols=245  Identities=11%  Similarity=0.051  Sum_probs=158.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeE--cCChHHHHHHHHHHHHHHHHHhcC--CCCCeEEecCCCc
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNM--TSGGTESILLAVKSSRDYMRNKRG--ITRPEMIIPVSAH  236 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~--t~ggt~a~~~al~a~~~~~~~~~G--~~~~~Viv~~~~h  236 (438)
                      |...++..++++.+.+++....|.  ++++    +  ++  |+||++|+.++++.++..   .+|  ...++|+++.++|
T Consensus        70 y~~~~g~~~lr~~la~~~~~~~~~~~~~~~----v--~~~~t~gg~~a~~~~~~~~~~~---~~g~~~~~d~Vl~~~p~y  140 (412)
T 1ajs_A           70 YLPILGLAEFRTCASRLALGDDSPALQEKR----V--GGVQSLGGTGALRIGAEFLARW---YNGTNNKDTPVYVSSPTW  140 (412)
T ss_dssp             CCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----E--EEEEEEHHHHHHHHHHHHHHHH---SSSSSCCCSCEEEEESCC
T ss_pred             CCCCCCCHHHHHHHHHHHhcCCCCccCCCc----E--EEEECCCcHHHHHHHHHHHHHh---CcCcCCCCCeEEEcCCCc
Confidence            433455555555544444332222  3444    6  88  999999999997654421   123  1116899999999


Q ss_pred             CcHHHHHhhcCcE-EEEeeCC--CCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEE
Q 013675          237 SAYDKAAQYFNIK-LWRVPVD--KEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLH  307 (438)
Q Consensus       237 ~s~~~a~~~~Gi~-v~~v~~~--~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lh  307 (438)
                      +++...++..|++ ++.+|++  .++.+|++++++++++   +++++++++|+||||.+.+   +++|+++|++||++++
T Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li  220 (412)
T 1ajs_A          141 ENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPF  220 (412)
T ss_dssp             THHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence            9999999999999 9999984  4788999999999975   6888889999999999965   6689999999999999


Q ss_pred             EeccccchhhhhhhhcCCCCCCCc-cC-CCCccEEEeCCCCCCCCCCC--cEEEEEe--ccccccc---chh--cccccC
Q 013675          308 VDLCLGGFVLPFAKKLGYPIPPFD-FS-VQGVTSISVDVHKYGLAPKG--TSVVLYR--NREIRKH---QFV--AVTEWS  376 (438)
Q Consensus       308 VD~a~gg~~~pf~~~~g~~~p~~~-~~-~~gvdsis~s~hK~~~~p~g--~g~l~~r--~~~~~~~---~~~--~~~~~~  376 (438)
                      +|++|.++...-....   .+++. +. ...-+++..+++|. +++.|  +|+++..  +++..+.   ...  ....|.
T Consensus       221 ~De~y~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (412)
T 1ajs_A          221 FDSAYQGFASGNLEKD---AWAIRYFVSEGFELFCAQSFSKN-FGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWS  296 (412)
T ss_dssp             EEESCTTTTTSCHHHH---THHHHHHHHTTCCEEEEEECTTT-SCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTS
T ss_pred             EEcccccccCCccccc---chHHHHHhccCCcEEEEEecccc-cCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccC
Confidence            9999877643100000   00011 11 11234788899998 56666  7988872  4432111   010  001111


Q ss_pred             CCccCCCCccCCCCCchHHHHHHHHHHHc-----HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          377 GGLYVSPTVAGSRPGGLIAGAWAALMSLG-----QEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       377 g~~~~~~~~~gsr~~~~ia~~~aal~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      +           -+....+++.+++....     .+.+++..++..++++++.+.|++++
T Consensus       297 ~-----------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1ajs_A          297 N-----------PPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             S-----------CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             C-----------CChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            0           01111223333443221     34677888889999999999998874

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.76  E-value=2e-17  Score=168.90  Aligned_cols=236  Identities=17%  Similarity=0.122  Sum_probs=146.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCe---EEecCCCc-CcHHHHHhhcCcEE
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPE---MIIPVSAH-SAYDKAAQYFNIKL  250 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~---Viv~~~~h-~s~~~a~~~~Gi~v  250 (438)
                      ++++++++++|.+  +    +  ++|+|||+|+.+++++++++.. .+|   ++   |+++ ..| ..+..++...|.++
T Consensus        80 ~l~~~la~~~~~~--~----v--~~t~ggt~A~~~al~~~~~~~~-~~G---d~~~~viv~-~~~~~~~~~~~~~~g~~~  146 (467)
T 1ax4_A           80 DLKDKAKELFNYD--Y----I--IPAHQGRGAENILFPVLLKYKQ-KEG---KAKNPVFIS-NFHFDTTAAHVELNGCKA  146 (467)
T ss_dssp             HHHHHHHHHHCCC--E----E--EEESSHHHHHHHHHHHHHHHHH-HTT---CCSSCEEEE-SSCCHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCC--c----E--EEcCCcHHHHHHHHHHHHHhhc-cCC---CccceEEEe-ccccchhhHHHhccCCce
Confidence            4455688888763  2    4  8999999999999999875321 256   67   8888 555 55677888889998


Q ss_pred             EEeeCCC----------CCccCHHHHHHhhcc----CcEEEEEecCCCCC-cccc---CHHHHHHHHHHcCCeEEEeccc
Q 013675          251 WRVPVDK----------EFRADVKAIKKYINR----NTVLIVGSAPGFPH-GIID---PIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       251 ~~v~~~~----------~~~~d~~~Le~~I~~----~t~~vv~~~~~~~t-G~id---di~~I~~la~~~~i~lhVD~a~  312 (438)
                      +.++.+.          ++.+|+++|+++|++    +|++|++++++||+ |.+.   ++++|+++|++||+++|+|+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~  226 (467)
T 1ax4_A          147 INIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSAR  226 (467)
T ss_dssp             EECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred             ecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchh
Confidence            8776431          467999999999984    68999999999999 7764   4789999999999999999986


Q ss_pred             cc-hhhhhh-----hhcCCCCCCCc-cCCCCccEEEeCCCCCCCCCCCcEEEEEecc-cccccchhcccccCCCccCCCC
Q 013675          313 GG-FVLPFA-----KKLGYPIPPFD-FSVQGVTSISVDVHKYGLAPKGTSVVLYRNR-EIRKHQFVAVTEWSGGLYVSPT  384 (438)
Q Consensus       313 gg-~~~pf~-----~~~g~~~p~~~-~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~-~~~~~~~~~~~~~~g~~~~~~~  384 (438)
                      +. ... |.     ...+.+++.+. .....+|++++++||++..|.| |+++.+++ ++..........+ ++.    .
T Consensus       227 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~-~~~----~  299 (467)
T 1ax4_A          227 FCENAY-FIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM-EGF----V  299 (467)
T ss_dssp             HHHHHH-HHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH-TCS----T
T ss_pred             hhhcch-hccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc-ccc----c
Confidence            43 111 00     00111000000 0002368899999999655545 66656645 5543221111112 111    1


Q ss_pred             ccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       385 ~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..|..+...++++..++...-.   .+..++..++++++.+.|++ ++++
T Consensus       300 ~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~  345 (467)
T 1ax4_A          300 TYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE-AGIP  345 (467)
T ss_dssp             TTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH-TTCC
T ss_pred             ccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh-CCCC
Confidence            1122222223333334433211   12344445677888888876 4554

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.75  E-value=2.4e-17  Score=165.97  Aligned_cols=260  Identities=11%  Similarity=0.056  Sum_probs=164.6

Q ss_pred             HHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCC
Q 013675          147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR  226 (438)
Q Consensus       147 ~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~  226 (438)
                      .+.+++..........|...++..++++++.+++.+..+.+...   ++  ++|+||++|+..+++++.     .+|   
T Consensus        60 ~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~i--~~t~g~~~al~~~~~~l~-----~~g---  126 (418)
T 3rq1_A           60 TVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHI---RS--IATAGGTGGIHHLIHNYT-----EPG---  126 (418)
T ss_dssp             HHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEE---EE--EEESHHHHHHHHHHHHHS-----CTT---
T ss_pred             HHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccc---cE--EECCchHHHHHHHHHHhc-----CCC---
Confidence            34444444322222334445566777887777776666543221   15  899999999999999875     367   


Q ss_pred             CeEEecCCCcCcHHHHHhhcCcEEEEeeCC-CCCccCHHHHHHhhcc----CcE-EEEEecC-CCCCccccCHHHH---H
Q 013675          227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVD-KEFRADVKAIKKYINR----NTV-LIVGSAP-GFPHGIIDPIQEL---G  296 (438)
Q Consensus       227 ~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~-~~~~~d~~~Le~~I~~----~t~-~vv~~~~-~~~tG~iddi~~I---~  296 (438)
                      ++|+++.+.|..+...++..|.+++.+|++ +++.+|+++|++++++    +++ ++++++| +||||.+.|.+++   +
T Consensus       127 d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~  206 (418)
T 3rq1_A          127 DEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSIL  206 (418)
T ss_dssp             CEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             CEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            899999999999999999999999999995 4679999999999985    665 8888999 9999999886554   4


Q ss_pred             HHHH------HcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc-----cEEEeCCCCCCC-CCCCcEEEEE--ecc
Q 013675          297 ELAL------SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV-----TSISVDVHKYGL-APKGTSVVLY--RNR  362 (438)
Q Consensus       297 ~la~------~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv-----dsis~s~hK~~~-~p~g~g~l~~--r~~  362 (438)
                      ++|+      +||+++++|++|.++...  ...   .+++-....++     .+++.+++|.+. .+..+|+++.  +++
T Consensus       207 ~~~~~~~~~~~~~~~li~De~y~~~~~~--~~~---~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~  281 (418)
T 3rq1_A          207 NFLKDLVAIGRNNVIIGIDVAYLDYSGE--KDE---VRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDE  281 (418)
T ss_dssp             HHHHHHHHTSSCEEEEEEECTTGGGSSC--HHH---HHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSH
T ss_pred             HHHHHhhhccCCCeEEEEecccccccCC--hHH---HHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCH
Confidence            5555      899999999999766531  000   00010011111     367779999843 3345788776  245


Q ss_pred             cccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH--------HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          363 EIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ--------EGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       363 ~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~--------~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ++.............         +........++.++...+..        +..++..++..++++++.+.|+++ |++
T Consensus       282 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  351 (418)
T 3rq1_A          282 EIADEFFEVNKSTSR---------ATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLP  351 (418)
T ss_dssp             HHHHHHHHHHHHHHH---------HHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             HHHHHHHHHHHHHHh---------hccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            444321111000000         00000112234444433322        123355567778888888888775 544

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.75  E-value=1.9e-17  Score=166.91  Aligned_cols=175  Identities=17%  Similarity=0.098  Sum_probs=131.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHH--HHHHHHHHHHHHhcCCC------CCeEEecCCCcCcHHHHHhhc
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESIL--LAVKSSRDYMRNKRGIT------RPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~--~al~a~~~~~~~~~G~~------~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      ++++.++++++.++++    +  ++|+|+++++.  ++++++...   .+|-.      .++|+++.++|..+...++..
T Consensus        74 ~lr~~ia~~~~~~~~~----i--~~t~G~~~al~~~~~~~~l~~~---~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~  144 (423)
T 3ez1_A           74 SARALFAGYLDVKAEN----V--LVWNNSSLELQGLVLTFALLHG---VRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL  144 (423)
T ss_dssp             HHHHHHHHHTTSCGGG----E--EECSSCHHHHHHHHHHHHHHTC---CTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChhh----E--EEeCCcHHHHHHHHHHHHHhcc---CCCccccccCCCCEEEEcCCCcHHHHHHHHHc
Confidence            4455677888888765    6  99999999998  788776520   02100      289999999999999999999


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhh--ccCcEEEEEe-cCCCCCccccCHH---HHHHHH-HHcCCeEEEeccccchhhhh
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYI--NRNTVLIVGS-APGFPHGIIDPIQ---ELGELA-LSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I--~~~t~~vv~~-~~~~~tG~iddi~---~I~~la-~~~~i~lhVD~a~gg~~~pf  319 (438)
                      |++++.+|+++++ +|+++|++++  +++|++|+++ +++||||.+.|.+   +|+++| +++|+++++|++|+.+... 
T Consensus       145 g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~-  222 (423)
T 3ez1_A          145 GFELLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLV-  222 (423)
T ss_dssp             TCEEEEEEEETTE-ECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCC-
T ss_pred             CCEEEeccCCCCC-CCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcC-
Confidence            9999999998764 9999999999  5788888654 8999999998876   888888 8999999999999743221 


Q ss_pred             hhhcCCCCCC-Ccc----CCCCccEEEeCCCCCCCCCCCcEEEEEec
Q 013675          320 AKKLGYPIPP-FDF----SVQGVTSISVDVHKYGLAPKGTSVVLYRN  361 (438)
Q Consensus       320 ~~~~g~~~p~-~~~----~~~gvdsis~s~hK~~~~p~g~g~l~~r~  361 (438)
                       ..-+...++ +..    ...+.+++..+++|+++++.++|+++.++
T Consensus       223 -~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~  268 (423)
T 3ez1_A          223 -EEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE  268 (423)
T ss_dssp             -SSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH
T ss_pred             -CCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH
Confidence             000000001 111    23456788999999877778899877764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.75  E-value=1.2e-17  Score=169.54  Aligned_cols=179  Identities=16%  Similarity=0.183  Sum_probs=135.4

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC------------
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP------------  227 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~------------  227 (438)
                      .+...++..++++++.+++.+.+|.+  +++    +  ++|+|+|+|+.++++++..     +|   +            
T Consensus        78 ~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~----i--~~t~G~t~al~~~~~~l~~-----~g---d~~~~~~~~~~g~  143 (444)
T 3if2_A           78 NYSNPQGDSAFIDALVGFFNRHYDWNLTSEN----I--ALTNGSQNAFFYLFNLFGG-----AF---VNEHSQDKESKSV  143 (444)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESSHHHHHHHHHHHSSE-----EE---ECC-------CEE
T ss_pred             ccCCCCCCHHHHHHHHHHHHhhcCCCCCHHH----E--EEecCcHHHHHHHHHHHhC-----CC---ccccccccccccc
Confidence            34445566788888888888877754  444    6  9999999999999998752     45   4            


Q ss_pred             --eEEec-CCCcCcHHHHH------hhcCcEEEEeeCCC-C----CccCHHHHHHh---hccCcEEEEEecCCCCCcccc
Q 013675          228 --EMIIP-VSAHSAYDKAA------QYFNIKLWRVPVDK-E----FRADVKAIKKY---INRNTVLIVGSAPGFPHGIID  290 (438)
Q Consensus       228 --~Viv~-~~~h~s~~~a~------~~~Gi~v~~v~~~~-~----~~~d~~~Le~~---I~~~t~~vv~~~~~~~tG~id  290 (438)
                        +|+++ .++|..+..++      ...|.+++.+|+++ +    +.+|+++|+++   ++++|++|++++|+||||.+.
T Consensus       144 ~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~  223 (444)
T 3if2_A          144 DKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVL  223 (444)
T ss_dssp             EEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCC
T ss_pred             cceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcC
Confidence              68776 77888776643      34577888888875 3    47999999998   778899999999999999999


Q ss_pred             C---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEe
Q 013675          291 P---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR  360 (438)
Q Consensus       291 d---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r  360 (438)
                      |   +++|+++|++||+++|+|++|+.+...    ..+ . .......+.++++.++||++..+.++|+++.+
T Consensus       224 ~~~~l~~i~~~a~~~~~~li~De~~~~~~~~----~~~-~-~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~  290 (444)
T 3if2_A          224 TDEEMAHLAEIAKRYDIPLIIDNAYGMPFPN----IIY-S-DAHLNWDNNTILCFSLSKIGLPGMRTGIIVAD  290 (444)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEECTTCTTTTC----CBC-S-CCCCCCCTTEEEEEESTTTTCGGGCCEEEECC
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECCCCCcccc----ccc-c-cccccCCCCEEEEechhhccCCCCceEEEEEC
Confidence            8   888999999999999999999753211    100 0 11112346789999999986666778886654

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.75  E-value=7.8e-17  Score=160.82  Aligned_cols=222  Identities=16%  Similarity=0.110  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCc-CcHHHHHhhcCcE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH-SAYDKAAQYFNIK  249 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h-~s~~~a~~~~Gi~  249 (438)
                      +...++++.+++++|.+.++    +  ++|+|||+|+.+++++++..   .+|   ++|+++.+.| .....++...|.+
T Consensus        87 ~~~~~l~~~la~~~~~~~~~----v--~~~~gg~~a~~~al~~~~~~---~~~---~~vi~~~~~y~~~~~~~~~~~g~~  154 (395)
T 1vef_A           87 PMRGEFYRTLTAILPPELNR----V--FPVNSGTEANEAALKFARAH---TGR---KKFVAAMRGFSGRTMGSLSVTWEP  154 (395)
T ss_dssp             HHHHHHHHHHHHTSCTTEEE----E--EEESSHHHHHHHHHHHHHHH---HSC---CEEEEETTCCCCSSHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHhcCCCcCE----E--EEcCcHHHHHHHHHHHHHHH---hCC---CeEEEEcCCcCCCchhhhhhcCCc
Confidence            35567778899999876554    5  89999999999999987532   145   7788877765 4566677777765


Q ss_pred             ------------EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEecccc
Q 013675          250 ------------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       250 ------------v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~g  313 (438)
                                  +..++.     .|+++|+++++++|++|+++++++|||.+.|    +++|+++|++||+++|+|++|+
T Consensus       155 ~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~  229 (395)
T 1vef_A          155 KYREPFLPLVEPVEFIPY-----NDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT  229 (395)
T ss_dssp             HHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             ccccccCCCCCCeeEeCC-----CcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence                        333332     4899999999989999998888889999877    9999999999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      ++..     .|... .++....+.|++++  ||++.+|.++|+++.+++ +.+.. .  ..+.+.     +.  +.+...
T Consensus       230 ~~~~-----~g~~~-~~~~~~~~~d~~s~--sK~~~~g~~~G~~~~~~~-~~~~l-~--~~~~~~-----~~--~~~~~~  290 (395)
T 1vef_A          230 GMGR-----TGKRF-AFEHFGIVPDILTL--AKALGGGVPLGVAVMREE-VARSM-P--KGGHGT-----TF--GGNPLA  290 (395)
T ss_dssp             TTTT-----TSSSS-THHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHH-HHHTS-C--TTSSCC-----SS--TTCHHH
T ss_pred             CCcc-----CCchh-HhhhcCCCCCEEEE--cccccCCCceEEEEehHH-HHhhh-c--cCCcCC-----Cc--CCCHHH
Confidence            6432     11100 11222234677754  899777788999888764 32211 1  001110     00  111112


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      .+++.++++.+..   .+..++..++++++.+.|++++
T Consensus       291 ~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~  325 (395)
T 1vef_A          291 MAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIP  325 (395)
T ss_dssp             HHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhh
Confidence            3345555655432   3567788889999999998764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.75  E-value=3.4e-17  Score=162.87  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC---cHHHHHhhc
Q 013675          171 RFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS---AYDKAAQYF  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~---s~~~a~~~~  246 (438)
                      .+++++.+.+++++|.++ ++    +  ++|+|||+|+.++++++       +|   ++|+++.+.|+   ++...++..
T Consensus        58 ~~~~~~~~~~a~~~g~~~~~~----~--~~~~ggt~a~~~~~~~~-------~g---d~Vl~~~~~y~~~~~~~~~~~~~  121 (374)
T 2aeu_A           58 YFAEKVNEYGLKHLGGDENDK----C--VGFNRTSSAILATILAL-------KP---KKVIHYLPELPGHPSIERSCKIV  121 (374)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEE----E--EEESSHHHHHHHHHHHH-------CC---SEEEEECSSSSCCTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCcce----E--EEEcChHHHHHHHHHhC-------CC---CEEEEecCCCCccHHHHHHHHHc
Confidence            455677788889999842 33    4  89999999999999875       56   89999999544   444477888


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhccCcEE-EEEecCCCCCc-cccCHHHHHHHHHHcCCeEEEeccccchhh-hhhhhc
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINRNTVL-IVGSAPGFPHG-IIDPIQELGELALSHGTCLHVDLCLGGFVL-PFAKKL  323 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~-vv~~~~~~~tG-~iddi~~I~~la~~~~i~lhVD~a~gg~~~-pf~~~~  323 (438)
                      |++++.+       .|+++++++ +++|++ |++++|+||+| ...|+++|.++|++||+++|+|++++.+.. |..   
T Consensus       122 g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~---  190 (374)
T 2aeu_A          122 NAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFN---  190 (374)
T ss_dssp             TCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT---
T ss_pred             CcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccc---
Confidence            9999888       389999999 888999 99999999999 889999999999999999999999976642 110   


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEec
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRN  361 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~  361 (438)
                         . . .....++|+++.++||++.+ .++|+++.++
T Consensus       191 ---~-~-~~~~~~~di~~~S~sK~l~g-~~~G~~~~~~  222 (374)
T 2aeu_A          191 ---Q-P-PALKLGADLVVTSTDKLMEG-PRGGLLAGKK  222 (374)
T ss_dssp             ---C-C-CHHHHTCSEEEEETTSSSSS-CSCEEEEEEH
T ss_pred             ---c-C-CccccCCcEEEecCcccccC-cceEEEEECH
Confidence               0 0 01113579999999999544 5889877764

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.75  E-value=1.2e-16  Score=162.40  Aligned_cols=251  Identities=13%  Similarity=0.085  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHhhc-cCCCCcccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH
Q 013675          144 HFSLINEACSMFAH-TNPLHLDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN  220 (438)
Q Consensus       144 ~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~  220 (438)
                      +.+.+.+.+..... .....|...++..++++++.+++.  .|  .++++    +  ++|+|+++++..+ .++.     
T Consensus        87 v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~----i--~~t~G~~~al~~~-~~l~-----  152 (449)
T 3qgu_A           87 IADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADE----I--FISDGSKCDIARI-QMMF-----  152 (449)
T ss_dssp             HHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGG----E--EEESCHHHHHHHH-HHHH-----
T ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHH----E--EEccCHHHHHHHH-HHHh-----
Confidence            34444454443322 122233333455666666555554  33  44444    6  8999999999987 5554     


Q ss_pred             hcCCCCCeEEecCCCcCcHHHHHhhcCcE----------EEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCcc
Q 013675          221 KRGITRPEMIIPVSAHSAYDKAAQYFNIK----------LWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGI  288 (438)
Q Consensus       221 ~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~----------v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~  288 (438)
                      .+|   ++|+++.+.|.++...++..|.+          ++.+|+++  ++..|++++     +++++|++++|+||||.
T Consensus       153 ~~g---d~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~  224 (449)
T 3qgu_A          153 GSK---PTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGA  224 (449)
T ss_dssp             CSS---SCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCC
T ss_pred             CCC---CEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCCCCCCCC
Confidence            367   89999999999999999999998          99999975  344555432     57899999999999999


Q ss_pred             ccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCCC-CCCCcEEEEEecc
Q 013675          289 IDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNR  362 (438)
Q Consensus       289 idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~~-~p~g~g~l~~r~~  362 (438)
                      +.+   +++|+++|++||+++++|++|+++...     |.....+ .+. ..+++++..+++|.+. .+.++|+++.+++
T Consensus       225 ~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~  299 (449)
T 3qgu_A          225 AATRAQLTELVNFARKNGSILVYDAAYALYISN-----PDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKA  299 (449)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCC-----TTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTT
T ss_pred             cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcC-----CCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHH
Confidence            976   778888999999999999999876531     1000011 111 1356788999999953 4456899877654


Q ss_pred             ccccc------chhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          363 EIRKH------QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       363 ~~~~~------~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      .....      .+.....            +.-.+....++.++...+   +.+.+++..++..++++++.+.|+++ |+
T Consensus       300 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  366 (449)
T 3qgu_A          300 LKYANGEPVHADWNRVMT------------TCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GF  366 (449)
T ss_dssp             CBCTTSCBHHHHHHHHHH------------HSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHhhhhhhHHHHHHHHhh------------cccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            32210      1000000            000011122444444444   33567788889999999999999886 55


Q ss_pred             c
Q 013675          434 L  434 (438)
Q Consensus       434 ~  434 (438)
                      +
T Consensus       367 ~  367 (449)
T 3qgu_A          367 S  367 (449)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.75  E-value=1.5e-17  Score=173.21  Aligned_cols=181  Identities=15%  Similarity=0.146  Sum_probs=140.9

Q ss_pred             cchhHHHHHHHHHHHHHHHhC--CCC---CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          165 IFQSVARFEAEVIAMTAALLG--NKE---KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g--~~~---~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      ...+..++++++.+++.+.++  .+.   ++    +  ++|+|+|+|+.+++.++..+....+|   ++|+++.++|.++
T Consensus       136 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~----i--~~t~G~t~al~~~~~~l~~~~l~~~g---d~Viv~~p~~~~~  206 (533)
T 3f6t_A          136 PDRCLVNTEKIINYFLQELSYKDANLAEQTD----L--FPTEGGTAAIVYAFHSLAENHLLKKG---DKIAINEPIFTPY  206 (533)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHTTTCCCGGGEE----E--EEEEHHHHHHHHHHHHHHHTTSSCTT---CEEEEESSCCHHH
T ss_pred             CcccHHHHHHHHHHHHHHhcCCCCCCCCcce----E--EEECCHHHHHHHHHHHhhhhhccCCc---CEEEEcCCCcHHH
Confidence            345667888888888876633  222   23    5  89999999999999884321111356   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCC----CCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHH---HHHHHHH-HcCCeEEEecc
Q 013675          240 DKAAQYFNIKLWRVPVD----KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQ---ELGELAL-SHGTCLHVDLC  311 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~----~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~---~I~~la~-~~~i~lhVD~a  311 (438)
                      ...++..|.+++.+|++    .++.+|+++|++++++++++|++++|+||||.+.|.+   +|+++|+ +||+++++|++
T Consensus       207 ~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~  286 (533)
T 3f6t_A          207 LRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEV  286 (533)
T ss_dssp             HTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred             HHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCC
Confidence            99999999999999985    3688999999999999999999999999999998765   8888888 68999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEeccc
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNRE  363 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~  363 (438)
                      |+++...        .+++.....+.++++.+++|. ++++|  +|+++.+++.
T Consensus       287 y~~~~~~--------~~~~~~~~~~~~i~~~S~SK~-~g~~G~RiG~l~~~~~~  331 (533)
T 3f6t_A          287 YGAFVPN--------FKSIYSVVPYNTMLVYSYSKL-FGCTGWRLGVIALNEKN  331 (533)
T ss_dssp             TGGGSTT--------CCCHHHHSGGGEEEEEESHHH-HTCGGGCEEEEEEESSC
T ss_pred             ccccccC--------ccCHhhcCCCCEEEEecCccc-CCCcccceEEEEECcHH
Confidence            9876531        111211223457889999999 56666  8998888763

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.60  E-value=9.8e-20  Score=181.99  Aligned_cols=239  Identities=13%  Similarity=0.073  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          169 VARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      ..++++++.+++.+.+|  .++++    +  ++|+|+++|+.++++++..     +|   ++|+++.+.|.++...++..
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~----v--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~p~~~~~~~~~~~~  133 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDKED----I--VFVEGVVPAISIAIQAFTK-----EG---EAVLINSPVYPPFARSVRLN  133 (392)
Confidence            56777888888888777  44444    6  8999999999999998853     56   88999999999999999999


Q ss_pred             CcEEEEeeCC-C--CCccCHHHHHHhhc-cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          247 NIKLWRVPVD-K--EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       247 Gi~v~~v~~~-~--~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      |.+++.+|.+ +  ++.+|+++++++++ +++++|++++|+||+|.+.|   +++|+++|++||+++++|++|+++... 
T Consensus       134 g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-  212 (392)
T 3b1d_A          134 NRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF-  212 (392)
Confidence            9999999985 3  35699999999998 67889999999999999865   899999999999999999999877642 


Q ss_pred             hhhcCCCCCCCccCC--CCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675          320 AKKLGYPIPPFDFSV--QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~--~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                        ..+. .+-.....  .+.+++..+++|.+. ++..+|+++.+++++..........|.        . ++.+....++
T Consensus       213 --g~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~a  280 (392)
T 3b1d_A          213 --GHEH-VSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNN--------H-HEVSSLGYIA  280 (392)
Confidence              0000 11111111  345678889999953 445688888776544432211111110        0 0001111122


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      +.+++. .+.+.+++..++..++++++.+.|++ +|++++
T Consensus       281 ~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  319 (392)
T 3b1d_A          281 TETAYR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKV  319 (392)
Confidence            333443 23456777888888899999999987 677654

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.74  E-value=2.1e-16  Score=157.50  Aligned_cols=224  Identities=18%  Similarity=0.095  Sum_probs=146.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEecCCCcCcHHHHHhhcCc-
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVSAHSAYDKAAQYFNI-  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~~~~h~s~~~a~~~~Gi-  248 (438)
                      ...++++++++++|.  +.    +  ++|+|||+|+.+++++++.......|.  .+++|+++.++|.+....+...+. 
T Consensus        79 ~~~~l~~~la~~~g~--~~----v--~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  150 (392)
T 3ruy_A           79 QLGPWYEKVAKLTNK--EM----V--LPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSN  150 (392)
T ss_dssp             THHHHHHHHHHHHTC--SE----E--EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSC
T ss_pred             HHHHHHHHHHHhcCC--CE----E--EEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCC
Confidence            345666788888883  22    5  899999999999999887532222222  136899999888765554443321 


Q ss_pred             ------------EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccc
Q 013675          249 ------------KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       249 ------------~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~  312 (438)
                                  ++..++.+     |+++|+++++++|++|++++++||+|.+.|    +++|+++|++||+++|+|++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~  225 (392)
T 3ruy_A          151 EEYKRGFGPMLPGIIVIPYG-----DLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQ  225 (392)
T ss_dssp             TTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTT
T ss_pred             hhhccccCCCCCCCeeeCcc-----cHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeech
Confidence                        24445443     899999999999999999999999999998    999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      +++...     |... ..+......|++++|  |.+.++ ..+|+++.++ ++.......   ..+..     .  +-+.
T Consensus       226 ~~~~~~-----g~~~-~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~-~~~~~~~~~---~~~~~-----~--~~~~  286 (392)
T 3ruy_A          226 TGLGRT-----GKVF-ACDWDNVTPDMYILG--KALGGGVFPISCAAANR-DILGVFEPG---SHGST-----F--GGNP  286 (392)
T ss_dssp             TTTTTT-----SSSS-GGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECH-HHHTTCCTT---SSCCS-----S--TTCH
T ss_pred             hCCCcc-----ccch-hhhccCCCCCEEEEc--hhhhCChhhhEEEEECH-HHHhhhccC---CcCCC-----C--CCCH
Confidence            765431     1101 122222235888776  874332 4588887764 332211000   00000     0  1111


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...+++.++++.+.   .++..++..++++++.+.|+++
T Consensus       287 ~~~~a~~~~l~~~~---~~~~~~~~~~~~~~l~~~L~~~  322 (392)
T 3ruy_A          287 LACAVSIAALEVLE---EEKLTERSLQLGEKLVGQLKEI  322 (392)
T ss_dssp             HHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHh
Confidence            12334444554332   2677888899999999999886

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.74  E-value=1.2e-17  Score=166.62  Aligned_cols=239  Identities=12%  Similarity=0.089  Sum_probs=155.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeE--cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNM--TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~--t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~  240 (438)
                      |...++..++++.+.+++... +.++++    +  ++  |+|||+|+.+++++++..   .+|   ++|+++.++|.++.
T Consensus        65 y~~~~g~~~lr~~la~~~~~~-~~~~~~----v--~~~~~~g~~~a~~~~~~~~~~~---~~g---d~vl~~~p~~~~~~  131 (394)
T 2ay1_A           65 YAGLSGEPEFQKAMGELILGD-GLKSET----T--ATLATVGGTGALRQALELARMA---NPD---LRVFVSDPTWPNHV  131 (394)
T ss_dssp             CCCSSCCHHHHHHHHHHHHGG-GCCGGG----E--EEEEEEHHHHHHHHHHHHHHHH---CTT---CCEEEEESCCHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHhCC-CCCccc----E--EEEecCCchhHHHHHHHHHHhc---CCC---CEEEEcCCCChhHH
Confidence            333344555666555444211 224444    5  67  999999999999887632   256   89999999999999


Q ss_pred             HHHhhcCcEEEEeeCC--CCCccCHHHHHHhhccC---cEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675          241 KAAQYFNIKLWRVPVD--KEFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       241 ~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~~~---t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~  312 (438)
                      ..++..|.+++.+|++  +++.+|+++++++++++   ++++++++|+||||.+.|   +++|+++|+++|+++++|++|
T Consensus       132 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~  211 (394)
T 2ay1_A          132 SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAY  211 (394)
T ss_dssp             HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCc
Confidence            9999999999999986  57889999999999753   678888999999999976   568899999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCc-cCCCCc-cEEEeCCCCCCCCCCC--cEEEEE--eccccccc---chh--cccccCCCccC
Q 013675          313 GGFVLPFAKKLGYPIPPFD-FSVQGV-TSISVDVHKYGLAPKG--TSVVLY--RNREIRKH---QFV--AVTEWSGGLYV  381 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~-~~~~gv-dsis~s~hK~~~~p~g--~g~l~~--r~~~~~~~---~~~--~~~~~~g~~~~  381 (438)
                      +++...--.. .  . ++. +...+. +++..+++|+ ++++|  +|+++.  .++++...   ...  ....|.     
T Consensus       212 ~~~~~~~~~~-~--~-~~~~~~~~~~~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----  281 (394)
T 2ay1_A          212 QGFGDGLEED-A--A-GTRLIASRIPEVLIAASCSKN-FGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYS-----  281 (394)
T ss_dssp             TTSSSCHHHH-H--H-HHHHHHHHCSSEEEEEECTTT-TTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTS-----
T ss_pred             cccccCcccc-h--H-HHHHHhhcCCCEEEEEeccCC-CcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcC-----
Confidence            8754300000 0  0 000 111122 4667788999 55555  598887  23432211   000  001111     


Q ss_pred             CCCccCCCCCchHHHHHHHHHHH-----cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSL-----GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                            ..+....+++..++...     -.+++++..++..++++++.+.|+++
T Consensus       282 ------~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (394)
T 2ay1_A          282 ------FPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL  329 (394)
T ss_dssp             ------SCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  00111122222333211     02467778888888999999988775

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.74  E-value=9.7e-18  Score=164.67  Aligned_cols=215  Identities=16%  Similarity=0.129  Sum_probs=153.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++++++++|.++++    +  ++|+|+|+++.++++++.       |   ++|+++.++|.++...++..|++++.+|
T Consensus        54 ~lr~~la~~~~~~~~~----i--~~t~g~~~al~~~~~~l~-------g---d~Vi~~~p~~~~~~~~~~~~g~~~~~v~  117 (350)
T 3fkd_A           54 TLRQMLAKRNSVDNNA----I--LVTNGPTAAFYQIAQAFR-------G---SRSLIAIPSFAEYEDACRMYEHEVCFYP  117 (350)
T ss_dssp             HHHHHHHHHTTCCGGG----E--EEESHHHHHHHHHHHHTT-------T---CEEEEEESCCHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHhCcCHHH----E--EEcCCHHHHHHHHHHHHC-------C---CEEEEeCCCcHHHHHHHHHcCCeEEEEe
Confidence            5677899999987765    6  899999999999998864       4   8999999999999999999999999999


Q ss_pred             C-CCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC-CeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675          255 V-DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG-TCLHVDLCLGGFVLPFAKKLGYPIPPFDF  332 (438)
Q Consensus       255 ~-~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~-i~lhVD~a~gg~~~pf~~~~g~~~p~~~~  332 (438)
                      + +++..+++        ++|++|++++|+||||.+.|+++|.++++.++ .++++|++|+.+...     +. .+....
T Consensus       118 ~~~~~~~~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~-----~~-~~~~~~  183 (350)
T 3fkd_A          118 SNEDIGEADF--------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTE-----EV-IRPADI  183 (350)
T ss_dssp             TTSCGGGSCC--------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSS-----CC-CCGGGG
T ss_pred             cCCccccCcc--------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccC-----cc-hhhHHh
Confidence            9 65445554        57899999999999999999999999999876 799999999765431     11 111222


Q ss_pred             CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH-HH
Q 013675          333 SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG-YL  410 (438)
Q Consensus       333 ~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g-~~  410 (438)
                      ...+.++++.+++|++. .+.++|+++. ++++.+........|               .....+++++...+.... +.
T Consensus       184 ~~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~  247 (350)
T 3fkd_A          184 KGRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPW---------------AVNALAIEAAKFILIHPAQFT  247 (350)
T ss_dssp             TTCSSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCTT---------------CSCHHHHHHHHHHHHCTTTTC
T ss_pred             hcCCCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCCCC---------------CCCHHHHHHHHHHHhCHHHHH
Confidence            33455688889999953 4456888777 454443221111111               011224444444332222 33


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          411 ENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       411 ~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +..++..++++++.+.|+++|++++
T Consensus       248 ~~~~~~~~~~~~l~~~L~~~~~~~~  272 (350)
T 3fkd_A          248 LPIRKWQRNTVDFITALNRLDGVEV  272 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            4444555889999999998888764

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.73  E-value=5e-17  Score=163.20  Aligned_cols=184  Identities=15%  Similarity=0.196  Sum_probs=130.5

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEec-CCCc
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIP-VSAH  236 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~-~~~h  236 (438)
                      .|...++..++.+.+.+++.+.+|.+  +++    +  ++|+|+|+|+.++++++..     +|-  ++.+|+++ .+.|
T Consensus        70 ~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~t~al~~~~~~l~~-----~gd~~~~~~vi~~~~p~~  138 (417)
T 3g7q_A           70 NYDGPQGKTALLNALAVLLRETLGWDIEPQN----I--ALTNGSQSAFFYLFNLFAG-----RRADGSTKKVLFPLAPEY  138 (417)
T ss_dssp             STTCTTSHHHHHHHHHHHHHHHHCCCCCGGG----E--EEESCHHHHHHHHHHHHSB-----C----CCBEEEESSCCCH
T ss_pred             ccCCCCCcHHHHHHHHHHHHHHhCCCCCccc----E--EEeCCcHHHHHHHHHHHcC-----CCccCCcceEEEeCCCcc
Confidence            34456677788888888888777754  444    6  9999999999999999863     441  01289998 8888


Q ss_pred             CcHHHHHhhc------CcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675          237 SAYDKAAQYF------NIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL  306 (438)
Q Consensus       237 ~s~~~a~~~~------Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l  306 (438)
                      ..+...+...      +..+..++.+. ++.+|+++++  ++++|++|++++|+||||.+.|   +++|+++|++||+++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~l  216 (417)
T 3g7q_A          139 IGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPL  216 (417)
T ss_dssp             HHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCE
T ss_pred             ccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEE
Confidence            8887665322      34555555442 4678999998  7888999999999999999988   889999999999999


Q ss_pred             EEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc
Q 013675          307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR  365 (438)
Q Consensus       307 hVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~  365 (438)
                      ++|++|+.+...    ..+  ........+.+++..+++|++..+.++|+++.+ +++.
T Consensus       217 i~De~~~~~~~~----~~~--~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~  268 (417)
T 3g7q_A          217 VIDNAYGVPFPG----IIF--SEARPLWNPNIILCMSLSKLGLPGSRCGIIIAN-DKTI  268 (417)
T ss_dssp             EEECTTCTTTTC----CBC--SCCCCCCCTTEEEEEESGGGTCTTSCCEEEECC-HHHH
T ss_pred             EEeCCCcccccc----ccc--cccccCCCCCEEEEEechhccCCCcceEEEEeC-HHHH
Confidence            999999753211    000  011112345688899999986666678986654 4443

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.71  E-value=1.5e-16  Score=160.67  Aligned_cols=169  Identities=16%  Similarity=0.088  Sum_probs=126.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHH--HHHHHHHHHHHHHhc---CC------CCCeEEecCCCcCcHHHHH
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESI--LLAVKSSRDYMRNKR---GI------TRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~--~~al~a~~~~~~~~~---G~------~~~~Viv~~~~h~s~~~a~  243 (438)
                      ++++.++++++.++++    +  ++|+|+++++  .++++++..     +   |.      +.++|+++.++|+.+..++
T Consensus        80 ~lr~~ia~~~~~~~~~----i--~~t~G~~~al~l~~~~~~l~~-----~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~  148 (422)
T 3d6k_A           80 DIRELWAEALGLPADL----V--VAQDGSSLNIMFDLISWSYTW-----GNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT  148 (422)
T ss_dssp             HHHHHHHHHHTCCGGG----E--EECSSCHHHHHHHHHHHHHHH-----CCTTCSSCGGGSSCCEEEEEESCCHHHHHHH
T ss_pred             HHHHHHHHHhCCChhH----E--EEecchHHHHHHHHHHHHhcC-----cccccccccccCCCCEEEEeCCccHHHHHHH
Confidence            3444567777888765    6  8999999997  455565542     2   20      1257999999999999999


Q ss_pred             hhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEE-EecCCCCCccccCHH---HHHHHHH-HcCCeEEEeccccc--h
Q 013675          244 QYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIV-GSAPGFPHGIIDPIQ---ELGELAL-SHGTCLHVDLCLGG--F  315 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv-~~~~~~~tG~iddi~---~I~~la~-~~~i~lhVD~a~gg--~  315 (438)
                      +..|++++.+|+++++ +|+++|++++++ ++++|+ .++|+||||.+.|.+   +|+++|+ ++|+++++|++|+.  +
T Consensus       149 ~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~  227 (422)
T 3d6k_A          149 EHFGFEMINVPMTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTL  227 (422)
T ss_dssp             HHHTCEEEEEEEETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBS
T ss_pred             HHcCCEEEecCCCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcccccc
Confidence            9999999999998765 999999999986 788877 789999999998876   7778888 99999999999963  3


Q ss_pred             hhhhhhhcCCCCCCC-c----cCCCCccEEEeCCCCCCCCCCCcEEEEEe
Q 013675          316 VLPFAKKLGYPIPPF-D----FSVQGVTSISVDVHKYGLAPKGTSVVLYR  360 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~-~----~~~~gvdsis~s~hK~~~~p~g~g~l~~r  360 (438)
                      ..     -+...+++ +    ....+.+++..+++|++..+.++|+++.+
T Consensus       228 ~~-----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~  272 (422)
T 3d6k_A          228 SD-----EFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASS  272 (422)
T ss_dssp             SS-----CCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECC
T ss_pred             CC-----CCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeC
Confidence            21     01001112 1    12345678888999995444568998765

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.71  E-value=3e-16  Score=158.66  Aligned_cols=234  Identities=14%  Similarity=0.114  Sum_probs=155.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      +...++..++++++.+++.+.++.++++    +  ++|+|+++++.+ +.++.     .+|   |+|+++.+.|+++...
T Consensus        94 y~~~~g~~~l~~~ia~~~~~~~~~~~~~----i--~~t~G~~~al~~-l~~l~-----~~g---d~Vl~~~p~y~~~~~~  158 (432)
T 3ei9_A           94 YGAEQGAKPLRAAIAKTFYGGLGIGDDD----V--FVSDGAKCDISR-LQVMF-----GSN---VTIAVQDPSYPAYVDS  158 (432)
T ss_dssp             CCCTTCCHHHHHHHHHHHHTTTTCCGGG----E--EEESCHHHHHHH-HHHHH-----CTT---CCEEEEESCCTHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCCcce----E--EECCChHHHHHH-HHHHc-----CCC---CEEEEeCCCCHHHHHH
Confidence            3334556777777777776555666655    6  899999999986 34443     367   8999999999999999


Q ss_pred             HhhcCc------------EEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCe
Q 013675          243 AQYFNI------------KLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTC  305 (438)
Q Consensus       243 ~~~~Gi------------~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~  305 (438)
                      ++..|.            +++.+|+++  +...|+++     .+++++|++++|+||||.+.+   +++|+++|++||++
T Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~  233 (432)
T 3ei9_A          159 SVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSI  233 (432)
T ss_dssp             HHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcE
Confidence            988874            688888875  34455443     357889999999999999876   66777789999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEeccccc------ccchhcccccCC
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIR------KHQFVAVTEWSG  377 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~------~~~~~~~~~~~g  377 (438)
                      +++|++|+++...   ..+  .+.... ...+.+++..+++|.+. .+..+|+++.+++...      ...+......  
T Consensus       234 li~Dea~~~~~~~---~~~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~--  306 (432)
T 3ei9_A          234 IVYDSAYAMYMSD---DNP--RSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICT--  306 (432)
T ss_dssp             EEEECTTGGGCCS---SCC--SSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHH--
T ss_pred             EEEccchHhhccC---CCC--CChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhcc--
Confidence            9999999876541   101  000111 12245788999999943 4455898877655411      1111100000  


Q ss_pred             CccCCCCccCCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          378 GLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       378 ~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                                .-.+....++.+++..+   +.+.+++..++..++++++.+.|+++ |++
T Consensus       307 ----------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  355 (432)
T 3ei9_A          307 ----------CFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYD  355 (432)
T ss_dssp             ----------SCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             ----------ccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cce
Confidence                      00011122344444333   34567888889999999999999886 554

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.70  E-value=1.4e-16  Score=159.56  Aligned_cols=223  Identities=14%  Similarity=0.115  Sum_probs=144.3

Q ss_pred             hhHHHHHHHHHHHHHHH--hC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          167 QSVARFEAEVIAMTAAL--LG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l--~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      ++..++++    .++++  .| .++++    +  ++|+|+++++.+++..+      .+|   ++|+++.++|.++..++
T Consensus        75 ~g~~~lr~----~la~~l~~g~~~~~~----v--~~~~G~~~al~~~~~~~------~~g---d~Vl~~~p~y~~~~~~~  135 (400)
T 3asa_A           75 FGLPALRQ----KLSEDFYRGFVDAKE----I--FISDGAKVDLFRLLSFF------GPN---QTVAIQDPSYPAYLDIA  135 (400)
T ss_dssp             TCCHHHHH----HHHHTTSTTSSCGGG----E--EEESCHHHHHHHHHHHH------CSS---CEEEEEESCCHHHHHHH
T ss_pred             CCCHHHHH----HHHHHHHcCCCCHHH----E--EEccChHHHHHHHHHHc------CCC---CEEEECCCCcHHHHHHH
Confidence            34444444    45665  56 55554    6  89999999999865332      266   89999999999999999


Q ss_pred             hhcCcE-EEEeeCCCC--CccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhh
Q 013675          244 QYFNIK-LWRVPVDKE--FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       244 ~~~Gi~-v~~v~~~~~--~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      +..|.+ ++.+|++++  ...|++   + + +++++|++++|+||||.+.|   +++|+++|+++|+++++|++|+++..
T Consensus       136 ~~~g~~~~~~~~~~~~~~~~~~l~---~-~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  210 (400)
T 3asa_A          136 RLTGAKEIIALPCLQENAFFPEFP---E-D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFIS  210 (400)
T ss_dssp             HHTTCSEEEEEECCGGGTTCCCCC---T-T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCC
T ss_pred             HHcCCcceEecccchhcCcccChh---h-c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhc
Confidence            999998 999998753  334432   2 1 57889999999999999987   56788999999999999999986542


Q ss_pred             hhhhhcCCCCCCCcc-CC---CCccEEEeCCCCCCCCCC--CcEEEEEecccc------cccchhcccccCCCccCCCCc
Q 013675          318 PFAKKLGYPIPPFDF-SV---QGVTSISVDVHKYGLAPK--GTSVVLYRNREI------RKHQFVAVTEWSGGLYVSPTV  385 (438)
Q Consensus       318 pf~~~~g~~~p~~~~-~~---~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~------~~~~~~~~~~~~g~~~~~~~~  385 (438)
                      .     +. . +... ..   .+.+++..+++|++ +++  .+|+++.+++..      ..........         ..
T Consensus       211 ~-----~~-~-~~~~~~~~~~~~~~i~~~s~sK~~-g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  273 (400)
T 3asa_A          211 D-----PS-L-PKSIFEIPDARFCAIEINSFSKPL-GFAGIRLGWTVIPQELTYADGHFVIQDWERFLS---------TT  273 (400)
T ss_dssp             C-----TT-S-CSSGGGSTTGGGTEEEEEECCGGG-TTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHH---------HH
T ss_pred             C-----CC-C-CCchhhCCCCCCceEEEecchhhc-CCcchheeEEeeChhhccchhhhHHHHHHHHhc---------cC
Confidence            1     10 0 1111 11   12458889999994 434  479987765431      1111100000         00


Q ss_pred             cCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          386 AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       386 ~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      .++-+   ..++.++...+....+++..++..++++++.+.|++. +++
T Consensus       274 ~~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  318 (400)
T 3asa_A          274 FNGAS---IPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFE  318 (400)
T ss_dssp             CCCCC---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             ccCCC---hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            00111   1123333333322246677888888999999999876 554

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.70  E-value=9.2e-16  Score=153.94  Aligned_cols=242  Identities=12%  Similarity=0.149  Sum_probs=155.1

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCC-----CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNK-----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA  235 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~-----~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~  235 (438)
                      ..|...++..++++++.+++   .|.+     +++    +....|.||++|+..+...++..  ..+|   ++|+++.++
T Consensus        73 ~~y~~~~g~~~lr~~ia~~~---~~~~~~~~~~~~----i~~~~~~~g~ga~~~~~~~~~~~--~~~g---d~Vlv~~p~  140 (409)
T 4eu1_A           73 MDYAPVTGIASFVEEAQKLC---FGPTCAALRDGR----IASCQTLGGTGALRIGGDLLNRF--VANC---NRIYGPDVG  140 (409)
T ss_dssp             CCCCCTTCCHHHHHHHHHHH---HCSSCHHHHTTC----EEEEEESHHHHHHHHHHHHGGGT--SSSC---CEEEEESSC
T ss_pred             ccCCCCCCcHHHHHHHHHHH---cCCCchhhccCc----eeeeecccchHHHHHHHHHHHHh--cCCC---CEEEEeCCC
Confidence            34444556566666655554   3554     333    32234899999998876544321  1256   899999999


Q ss_pred             cCcHHHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEE
Q 013675          236 HSAYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLH  307 (438)
Q Consensus       236 h~s~~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lh  307 (438)
                      |.++...++..|++++.+|++  +++.+|+++++++++   ++++++++++|+||||.+.+   +++|+++|++||++++
T Consensus       141 y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li  220 (409)
T 4eu1_A          141 YPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPF  220 (409)
T ss_dssp             CTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             cHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEE
Confidence            999999999999999999983  478899999999996   35677888999999999987   4569999999999999


Q ss_pred             EeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC--CCcEEE--EEeccc----ccccchhc-ccccCCC
Q 013675          308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVV--LYRNRE----IRKHQFVA-VTEWSGG  378 (438)
Q Consensus       308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p--~g~g~l--~~r~~~----~~~~~~~~-~~~~~g~  378 (438)
                      +|++|+++...-...-+..+..+. ....-.++..+++|. ++.  ..+|++  ++.+++    +....... ...|...
T Consensus       221 ~De~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~-~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~  298 (409)
T 4eu1_A          221 VDMAYQGFATGQLDYDAFVPRHLV-DMVPNLIVAQSFSKN-FGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNP  298 (409)
T ss_dssp             EEESCTTTTTSCHHHHTHHHHHHH-TTSSCCEEEEECTTT-SSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             EeccccccccCCcccchHHHHHHH-hhCCcEEEEecCccc-ccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCC
Confidence            999998765310000000000000 111123566788898 443  347887  566655    32211110 0111110


Q ss_pred             ccCCCCccCCCCCchHHHHHHHHHHHc--------HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          379 LYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       379 ~~~~~~~~gsr~~~~ia~~~aal~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                                 +   ..+++++...+.        .+.+++..++..++++++.+.|+++
T Consensus       299 -----------~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (409)
T 4eu1_A          299 -----------P---LYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC  344 (409)
T ss_dssp             -----------C---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----------C---hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                       0   113333333232        3346777888899999999999886

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.70  E-value=7.8e-16  Score=153.93  Aligned_cols=223  Identities=14%  Similarity=0.041  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC----
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN----  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G----  247 (438)
                      ...++++++++++|.+  +    +  ++|+|||+|+.+++++++.+.....+..+++|+++.+.|......+...+    
T Consensus        82 ~~~~l~~~la~~~~~~--~----v--~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~  153 (406)
T 4adb_A           82 PVLRLAKKLIDATFAD--R----V--FFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPA  153 (406)
T ss_dssp             HHHHHHHHHHHHSSCS--E----E--EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGG
T ss_pred             HHHHHHHHHHhhCCCC--e----E--EEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCcc
Confidence            4566778899998765  3    5  89999999999999998754332211123788888877666544333332    


Q ss_pred             ---------cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc-----cCHHHHHHHHHHcCCeEEEecccc
Q 013675          248 ---------IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-----DPIQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       248 ---------i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-----ddi~~I~~la~~~~i~lhVD~a~g  313 (438)
                               .++..+|.     .|+++|++++++++++|+++ |+||+|.+     +++++|.++|++||+++|+|++|+
T Consensus       154 ~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~  227 (406)
T 4adb_A          154 YSQDFAPLPADIRHAAY-----NDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT  227 (406)
T ss_dssp             GTGGGCSCCSSEEEECT-----TCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             ccccCCCCCCCceEeCC-----CcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence                     24444443     38999999999999999999 89999965     468999999999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      ++...     |... .++......|++++  +|.+.++..+|+++.+++ +.+.....   ..+..     .  +-+...
T Consensus       228 ~~~~~-----g~~~-~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~~~~-~~~~~~~~---~~~~~-----~--~~~~~~  288 (406)
T 4adb_A          228 GVGRT-----GELY-AYMHYGVTPDLLTT--AKALGGGFPVGALLATEE-CARVMTVG---THGTT-----Y--GGNPLA  288 (406)
T ss_dssp             TTTTT-----SSSS-HHHHHTCCCSEEEE--CGGGGTTSCCEEEEECHH-HHHTCCTT---SSCCS-----S--TTCHHH
T ss_pred             CCCcc-----chhH-HHHhcCCCCCEEEe--chhhcCCCCeEEEEEcHH-HHhhhccC---CcCCC-----C--CCCHHH
Confidence            65321     1100 11111223577765  899654455898776543 32211000   00000     0  111112


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .+++.++++.+..   ++..++..++++++.+.|+++
T Consensus       289 ~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~  322 (406)
T 4adb_A          289 SAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTI  322 (406)
T ss_dssp             HHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence            2333444443322   566777778888888887654

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.70  E-value=3.5e-16  Score=156.31  Aligned_cols=220  Identities=14%  Similarity=0.069  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH-hcCCCCCeEEecCCC-cCcHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSA-HSAYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~-~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi  248 (438)
                      +...++++.+++++|.  ++    +  ++|+|||+|+..++++++.+... .+|  +++|+++++. |.+...++...|.
T Consensus        82 ~~~~~l~~~la~~~g~--~~----v--~~~~gg~~a~~~al~~~~~~~~~~~~~--~~~vi~~~~~yh~~~~~~~~~~g~  151 (397)
T 2ord_A           82 RPQMELAELLSKNTFG--GK----V--FFANTGTEANEAAIKIARKYGKKKSEK--KYRILSAHNSFHGRTLGSLTATGQ  151 (397)
T ss_dssp             HHHHHHHHHHHHTTTS--CE----E--EEESSHHHHHHHHHHHHHHHHHHHCTT--CCEEEEEBTCCCCSSHHHHHHSBC
T ss_pred             HHHHHHHHHHHHhcCC--Ce----E--EEeCCHHHHHHHHHHHHHHHhhcCCCC--CceEEEEcCCcCCCchhhhhccCC
Confidence            3455677788888874  22    5  89999999999999988643211 022  2567776655 5666667778777


Q ss_pred             E------------EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCcc----ccCHHHHHHHHHHcCCeEEEeccc
Q 013675          249 K------------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGI----IDPIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       249 ~------------v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~----iddi~~I~~la~~~~i~lhVD~a~  312 (438)
                      +            ++.+|.+     |+++|+++++++|++|++++++||+|.    .+++++|+++|++||+++++|++|
T Consensus       152 ~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~  226 (397)
T 2ord_A          152 PKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQ  226 (397)
T ss_dssp             HHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             hhhccccCCCCCCeeEecCC-----CHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence            6            7777753     899999999999999999999999999    367999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccC--CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFS--VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~--~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~  390 (438)
                      +++...     |.   .+...  ....|++++  +|++.++.++|+++.+++ +.  .+..  ...+.     +.  +-+
T Consensus       227 ~~~~~~-----g~---~~~~~~~~~~~d~~s~--sK~~~~G~r~G~~~~~~~-~~--~l~~--~~~~~-----~~--~~~  284 (397)
T 2ord_A          227 CGMGRT-----GK---LFAYQKYGVVPDVLTT--AKGLGGGVPIGAVIVNER-AN--VLEP--GDHGT-----TF--GGN  284 (397)
T ss_dssp             TTTTTT-----SS---SSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECST-TC--CCCT--TSSCC-----SS--TTC
T ss_pred             cCCccC-----cc---chhhhhhCCCCCeeee--ccccCCCcCeEEEEEchH-hc--ccCC--CCcCC-----CC--CCC
Confidence            765321     11   11111  112577755  699666667999888765 22  1110  00000     11  111


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ....+++.++++.+..   ++..++..++++++.+.|+++
T Consensus       285 ~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~  321 (397)
T 2ord_A          285 PLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEM  321 (397)
T ss_dssp             HHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH
Confidence            1123344455554432   456677778888888888654

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.67  E-value=3.6e-15  Score=150.66  Aligned_cols=232  Identities=13%  Similarity=0.099  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHHhhcC----
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYFN----  247 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~~~~G----  247 (438)
                      ..++.+.++++++.+.++    +  ++|+|||+|+.+++++++.+... +|.++++|+++.+.|.. ...++...|    
T Consensus        88 ~~~l~~~la~~~~~~~~~----v--~~~~ggtea~~~ai~~~~~~~~~-~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~  160 (429)
T 1s0a_A           88 AIELCRKLVAMTPQPLEC----V--FLADSGSVAVEVAMKMALQYWQA-KGEARQRFLTFRNGYHGDTFGAMSVCDPDNS  160 (429)
T ss_dssp             HHHHHHHHHHHSCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHH-HTCCCCEEEEETTCCCCSSHHHHTTSCTTTT
T ss_pred             HHHHHHHHHHhCCCCCCE----E--EEeCCHHHHHHHHHHHHHHHhcc-cCCCCCeEEEECCCCCCCchhhhhhcCCchh
Confidence            445667789999876654    6  99999999999999987643221 12112789988876544 333333211    


Q ss_pred             ---------cEEEEeeCCC-----C-CccCHHHHHHhhc---cCcEEEEEecC-CCCCccccC----HHHHHHHHHHcCC
Q 013675          248 ---------IKLWRVPVDK-----E-FRADVKAIKKYIN---RNTVLIVGSAP-GFPHGIIDP----IQELGELALSHGT  304 (438)
Q Consensus       248 ---------i~v~~v~~~~-----~-~~~d~~~Le~~I~---~~t~~vv~~~~-~~~tG~idd----i~~I~~la~~~~i  304 (438)
                               .+++.++++.     + +.+|+++|+++++   +++++|+++.. +||+|.+.|    +++|+++|++||+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~  240 (429)
T 1s0a_A          161 MHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI  240 (429)
T ss_dssp             TGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTC
T ss_pred             hcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence                     1345555541     2 3689999999997   46777776665 789998766    9999999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCC
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP  383 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  383 (438)
                      ++|+|++|+++...     |... .++......|+++++  |.+.+| .++|+++.++ ++.+.. ....  .+. +   
T Consensus       241 ~li~De~~~~~g~~-----g~~~-~~~~~~~~~d~~t~s--K~l~~G~~~iG~~~~~~-~~~~~l-~~~~--~~~-~---  304 (429)
T 1s0a_A          241 LLIADEIATGFGRT-----GKLF-ACEHAEIAPDILCLG--KALTGGTMTLSATLTTR-EVAETI-SNGE--AGC-F---  304 (429)
T ss_dssp             EEEEECTTTTTTTT-----SSSS-GGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECH-HHHHHH-HTST--TSS-C---
T ss_pred             EEEEeehhhCCccc-----chHH-HhhhcCCCCCEEEec--ccccCCCccceEEEeCH-HHHHHh-hcCC--Ccc-c---
Confidence            99999999865421     1000 112112245787765  875566 7899988764 433221 1100  000 0   


Q ss_pred             CccCCCC--CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          384 TVAGSRP--GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       384 ~~~gsr~--~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...++-.  ....+++.++++.+..   .+..++..++++++.+.|+++
T Consensus       305 ~~~~t~~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l  350 (429)
T 1s0a_A          305 MHGPTFMGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPA  350 (429)
T ss_dssp             SCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGG
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH
Confidence            0011111  1123344455554422   245667778888999988775

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.67  E-value=3.1e-15  Score=149.29  Aligned_cols=170  Identities=18%  Similarity=0.119  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc----
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF----  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~----  246 (438)
                      +...++.+++++++|.  +.    +  ++|+|||+|+..++++++..... +|..+++|++..+.|......+...    
T Consensus        78 ~~~~~l~~~la~~~~~--~~----v--~~~~gg~ea~~~al~~~~~~~~~-~g~~~~~vi~~~~~yhg~~~~~~~~~~~~  148 (395)
T 3nx3_A           78 ENIAAAAKNLAKASAL--ER----V--FFTNSGTESIEGAMKTARKYAFN-KGVKGGQFIAFKHSFHGRTLGALSLTANE  148 (395)
T ss_dssp             HHHHHHHHHHHHHHTC--SE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred             HHHHHHHHHHHHhcCC--Ce----E--EEeCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEcCCcCCCCHHHHhhcCCc
Confidence            4566777788998873  33    5  89999999999999998764332 2333478988887765543222222    


Q ss_pred             ---------CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEecccc
Q 013675          247 ---------NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       247 ---------Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~g  313 (438)
                               +.++..+|.+     |+++|++++++++++|++..+++++|.+.+    +++|+++|++||+++|+|++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~  223 (395)
T 3nx3_A          149 KYQKPFKPLISGVKFAKYN-----DISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC  223 (395)
T ss_dssp             HHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             ccccccCCCCCCcEEeCCC-----CHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence                     2356666653     799999999999999999999999999877    9999999999999999999998


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      ++...     |... ..+......|+++++  |.+.++.++|+++.+++
T Consensus       224 ~~g~~-----g~~~-~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~~  264 (395)
T 3nx3_A          224 GMGRS-----GKFF-AYEHAQILPDIMTSA--KALGCGLSVGAFVINQK  264 (395)
T ss_dssp             TTTTT-----SSSS-GGGGGTCCCSEEEEC--GGGTTTSCCEEEEECHH
T ss_pred             CCCcC-----Ccch-hHHhcCCCCCEEEec--ccccCCCceEEEEEchh
Confidence            76431     1100 111112235777765  77555677898877654

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.67  E-value=1.7e-15  Score=154.63  Aligned_cols=184  Identities=11%  Similarity=0.072  Sum_probs=118.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCC-CeEEecCCCcCc-HH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR-PEMIIPVSAHSA-YD  240 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~-~~Viv~~~~h~s-~~  240 (438)
                      +...++..++    ++++++++|.+  .    +  ++|+|||+|+.+++++++......+|.++ ++|+++ ..|+. +.
T Consensus        70 y~~~~~~~~l----~~~la~~~~~~--~----v--~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~  136 (467)
T 2oqx_A           70 YSGSRSYYAL----AESVKNIFGYQ--Y----T--IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQ  136 (467)
T ss_dssp             SSSCHHHHHH----HHHHHHHHCCS--E----E--EEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHH
T ss_pred             eccCchhHHH----HHHHHHHhCcC--c----E--EEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccch
Confidence            4344554444    55688888763  2    4  89999999999999998753111115333 667776 56654 33


Q ss_pred             HHHhhcCcEEEEe------eCC----CCCccCHHHHHHhhcc----CcEEEEEecCCCCC-ccc---cCHHHHHHHHHHc
Q 013675          241 KAAQYFNIKLWRV------PVD----KEFRADVKAIKKYINR----NTVLIVGSAPGFPH-GII---DPIQELGELALSH  302 (438)
Q Consensus       241 ~a~~~~Gi~v~~v------~~~----~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~t-G~i---ddi~~I~~la~~~  302 (438)
                      ......|..+...      +.+    .++.+|+++|+++|++    +|++|++++++||+ |.+   +++++|+++|++|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~  216 (467)
T 2oqx_A          137 GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY  216 (467)
T ss_dssp             HHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHT
T ss_pred             hhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHc
Confidence            4445556665543      222    3567999999999984    79999999999998 776   4588999999999


Q ss_pred             CCeEEEeccccc-hhhh--h--hhhcCCCCCCCccC---CCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          303 GTCLHVDLCLGG-FVLP--F--AKKLGYPIPPFDFS---VQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       303 ~i~lhVD~a~gg-~~~p--f--~~~~g~~~p~~~~~---~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      |+++|+|++++. ....  .  ....|.  +...+.   ...+|++++++||++..|.| |+++.+++
T Consensus       217 gi~li~D~a~~~e~~~~~~~~~~~~~g~--~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~  281 (467)
T 2oqx_A          217 DIPVVMDSARFAENAYFIKQREAEYKDW--TIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDD  281 (467)
T ss_dssp             TCCEEEECTTHHHHHHHHHHHCGGGTTS--CHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSG
T ss_pred             CCEEEEEchhhhhhhhhcccccccccCc--cHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecCh
Confidence            999999988754 2110  0  000111  000110   12367889999999765645 66665554

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.65  E-value=3.8e-15  Score=150.36  Aligned_cols=223  Identities=17%  Similarity=0.058  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh--cCCCCCeEEecCCCc-CcHHHHHhhcC
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK--RGITRPEMIIPVSAH-SAYDKAAQYFN  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~--~G~~~~~Viv~~~~h-~s~~~a~~~~G  247 (438)
                      +...++.+.+++++|.  ++    +  ++|+|||+|+..++++++.+...+  +|  +++|+++.+.| .....++...|
T Consensus        99 ~~~~~l~~~la~~~g~--~~----v--~~~~ggteA~~~al~~~~~~~~~~~~~g--~~~vi~~~~~yh~~~~~~~~~~g  168 (420)
T 2pb2_A           99 EPALRLGRKLIDATFA--ER----V--LFMNSGTEANETAFKLARHYACVRHSPF--KTKIIAFHNAFHGRSLFTVSVGG  168 (420)
T ss_dssp             HHHHHHHHHHHHHSSC--SE----E--EEESSHHHHHHHHHHHHHHHHHHHTCTT--CCEEEEETTCCCCSSHHHHHHSS
T ss_pred             HHHHHHHHHHHhhCCC--Ce----E--EEeCCHHHHHHHHHHHHHHHhhhccCCC--CCEEEEEeCCcCCcCHHHHHhcC
Confidence            4556777788888874  23    5  899999999999999988643321  22  34788887665 44455555555


Q ss_pred             cE------------EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCcc----ccCHHHHHHHHHHcCCeEEEecc
Q 013675          248 IK------------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGI----IDPIQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       248 i~------------v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~----iddi~~I~~la~~~~i~lhVD~a  311 (438)
                      .+            +..+|.+     |+++|+++++++|++|+++.+++++|.    .+++++|.++|++||+++++|++
T Consensus       169 ~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev  243 (420)
T 2pb2_A          169 QPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEV  243 (420)
T ss_dssp             CHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             CccccccCCCCCCCeEEecCC-----CHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcC
Confidence            43            5566643     899999999999999999998888786    36799999999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      |.++..     .|... .++......|++++  +|++.++.++|+++.+++ +.+.. .  ....+.     +..+  +.
T Consensus       244 ~~g~~~-----~g~~~-~~~~~~~~~diit~--sK~l~~G~~iG~~~~~~~-l~~~l-~--~~~~~~-----t~~~--~~  304 (420)
T 2pb2_A          244 QCGMGR-----TGDLF-AYMHYGVTPDILTS--AKALGGGFPVSAMLTTQE-IASAF-H--VGSHGS-----TYGG--NP  304 (420)
T ss_dssp             TTTTTT-----TSSSS-HHHHHTCCCSEEEE--CGGGGTTSCCEEEEECHH-HHTTC-C------CC-----EECC--CH
T ss_pred             CcCccc-----CCcHH-HHHhcCCCCCeEEe--cccccCCCceEEEEEhHH-HHHhh-c--CCCcCc-----ccCc--CH
Confidence            976532     11100 01111123577765  698665566899888754 33211 0  000011     1111  11


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...+++.++++.+..   ++..++..++++++.+.|+++
T Consensus       305 ~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~  340 (420)
T 2pb2_A          305 LACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAI  340 (420)
T ss_dssp             HHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            123344455555433   356677778888888888654

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.64  E-value=6.7e-15  Score=148.70  Aligned_cols=177  Identities=17%  Similarity=0.147  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCc-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNI-  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi-  248 (438)
                      +...++.++++++++.+.++    +  ++|+||++|+..++++++..... +|. .+++|++..+.|..+...+...+. 
T Consensus        72 ~~~~~l~~~la~~~~~~~~~----v--~~~~gg~ea~~~al~~~~~~~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~~~  144 (430)
T 3i4j_A           72 DVLEEYAGRLARFVGLPTFR----F--WAVSGGSEATESAVKLARQYHVE-RGEPGRFKVITRVPSYHGASLGSLAASGM  144 (430)
T ss_dssp             HHHHHHHHHHHHHTTCTTCE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTC--------------
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCcHHHHHHHHHHHHHHHHHh-cCCCCCcEEEEEeCCcCCCCcccccccCc
Confidence            45567778899999877665    6  99999999999999998864332 231 247899888887665544433322 


Q ss_pred             --------------EEEEeeCCCC---CccCHHHHHHhhc----cCcEEEEEecCCC-CCccccC----HHHHHHHHHHc
Q 013675          249 --------------KLWRVPVDKE---FRADVKAIKKYIN----RNTVLIVGSAPGF-PHGIIDP----IQELGELALSH  302 (438)
Q Consensus       249 --------------~v~~v~~~~~---~~~d~~~Le~~I~----~~t~~vv~~~~~~-~tG~idd----i~~I~~la~~~  302 (438)
                                    .+..+|.+..   +..|+++|+++++    +++++|+++.+++ ++|.+.+    +++|+++|++|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~  224 (430)
T 3i4j_A          145 GARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA  224 (430)
T ss_dssp             -----------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH
T ss_pred             cccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc
Confidence                          3334444332   3457899999997    4567777777777 8898776    99999999999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccCCC-C--ccEEEeCCCCCCCCC-CCcEEEEEeccccc
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ-G--VTSISVDVHKYGLAP-KGTSVVLYRNREIR  365 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~-g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~  365 (438)
                      |+++|+|++|.++...     |.   .+..... +  .|+++++  |.+.++ ..+|+++.+ +++.
T Consensus       225 ~~~li~DEv~~~~~~~-----g~---~~~~~~~~~~~~di~t~s--K~l~~G~~r~G~~~~~-~~i~  280 (430)
T 3i4j_A          225 GIIFIADEVMSGMGRC-----GS---PLALSRWSGVTPDIAVLG--KGLAAGYAPLAGLLAA-PQVY  280 (430)
T ss_dssp             TCEEEEECTTTTTTTT-----SS---SSGGGGTTTCCCSEEEEC--GGGTTTSSCCEEEEEC-HHHH
T ss_pred             CCEEEEechhhCCCcc-----cc---hhhhhhhcCCCCcEEEEc--ccccCCccccEEEEEC-HHHH
Confidence            9999999999876431     11   1111112 2  4677665  885444 457887775 4443

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.63  E-value=4.2e-14  Score=142.52  Aligned_cols=220  Identities=15%  Similarity=0.054  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC-cHHHHHhhc---
Q 013675          172 FEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS-AYDKAAQYF---  246 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~-s~~~a~~~~---  246 (438)
                      ...++.+.+++++|.+ +++    +  ++|+||++|+..++++++..    .|   ++|+++.+.+. ....++...   
T Consensus        87 ~~~~l~~~la~~~~~~~~~~----v--~~~~gg~ea~~~ai~~~~~~----~~---~~vi~~~p~yh~~~~~~~~~~~~~  153 (419)
T 2eo5_A           87 PQLELAKKLVTYSPGNFQKK----V--FFSNSGTEAIEASIKVVKNT----GR---KYIIAFLGGFHGRTFGSISLTASK  153 (419)
T ss_dssp             HHHHHHHHHHHHSSCSSCEE----E--EEESSHHHHHHHHHHHHHTT----SC---CEEEEETTCCCCSSHHHHHHCCSC
T ss_pred             HHHHHHHHHHHhCCCCcCCE----E--EEeCchHHHHHHHHHHHHHh----hC---CcEEEECCCcCCCCHhhHhhcCCc
Confidence            3456677899999987 554    6  99999999999999987631    24   78988887654 444444321   


Q ss_pred             ----------CcEEEEeeCCCCCc----------------cCHHHHH-Hhhc-----cCcEEEEEecCCCCCccccC---
Q 013675          247 ----------NIKLWRVPVDKEFR----------------ADVKAIK-KYIN-----RNTVLIVGSAPGFPHGIIDP---  291 (438)
Q Consensus       247 ----------Gi~v~~v~~~~~~~----------------~d~~~Le-~~I~-----~~t~~vv~~~~~~~tG~idd---  291 (438)
                                +.+++.+|.+.+++                +|+++|+ ++++     +++++|+++..++++|.+.+   
T Consensus       154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~  233 (419)
T 2eo5_A          154 AVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKN  233 (419)
T ss_dssp             GGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTT
T ss_pred             cccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHH
Confidence                      13678888765433                4789999 9987     45666666555567898665   


Q ss_pred             -HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccch
Q 013675          292 -IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQF  369 (438)
Q Consensus       292 -i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~  369 (438)
                       +++|.++|++||+++|+|++|+++...     |. .-.++......|+++++  |.+.++ .++|+++.+++ +. . +
T Consensus       234 ~l~~l~~l~~~~~~~li~DE~~~~~g~~-----g~-~~~~~~~~~~~d~~t~s--K~~~~G~~riG~~~~~~~-~~-~-~  302 (419)
T 2eo5_A          234 FFAELQKLAKKYGILLVDDEVQMGLGRT-----GK-LFAIENFNTVPDVITLA--KALGGGIMPIGATIFRKD-LD-F-K  302 (419)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTTTTT-----SS-SSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEEEGG-GC-C-C
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCccC-----cc-hhhHHhcCCCCCEEEec--ccccCCccceEEEEEchH-hh-c-C
Confidence             999999999999999999999876431     10 00011112234777654  775555 78899888754 32 1 1


Q ss_pred             hcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       370 ~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .   ...++     +..  -+....+++.++++.+     ++..++..++.+++.+.|+++
T Consensus       303 ~---~~~~~-----t~~--~n~~~~~aa~aal~~~-----~~~~~~~~~~~~~l~~~L~~~  348 (419)
T 2eo5_A          303 P---GMHSN-----TFG--GNALACAIGSKVIDIV-----KDLLPHVNEIGKIFAEELQGL  348 (419)
T ss_dssp             --------------CCC--CCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTS
T ss_pred             C---cccCC-----CCC--CCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Confidence            1   00000     110  0111223444444432     236788888999999999775

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.63  E-value=5.5e-14  Score=143.02  Aligned_cols=174  Identities=18%  Similarity=0.173  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCc
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNI  248 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi  248 (438)
                      .+...++.++++++++.+.+     +  ++|+|||+|+..|+++++.+.... |. .+++|++..+.|......+...+.
T Consensus        90 ~~~~~~la~~l~~~~~~~~~-----v--~~~~ggseA~~~al~~~~~~~~~~-g~~~~~~vi~~~~~yhg~~~~~~~~~~  161 (452)
T 3n5m_A           90 HEPAIKLAEKLNEWLGGEYV-----I--FFSNSGSEANETAFKIARQYYAQK-GEPHRYKFMSRYRGYHGNTMATMAATG  161 (452)
T ss_dssp             EHHHHHHHHHHHHHHTSCEE-----E--EEESSHHHHHHHHHHHHHHHHHTT-TCTTCCEEEEETTCCCCSSHHHHHSCC
T ss_pred             CHHHHHHHHHHHHhCCCCce-----E--EEeCchHHHHHHHHHHHHHHHHhc-CCCCCCEEEEECCCcCCCCHHHHhcCC
Confidence            34566788889999886543     4  899999999999999998653322 11 237898888876654433333221


Q ss_pred             -------------EEEEeeCCCCCc------------cCHHHHHHhhc----cCcEEEEEecC-CCCCccccC----HHH
Q 013675          249 -------------KLWRVPVDKEFR------------ADVKAIKKYIN----RNTVLIVGSAP-GFPHGIIDP----IQE  294 (438)
Q Consensus       249 -------------~v~~v~~~~~~~------------~d~~~Le~~I~----~~t~~vv~~~~-~~~tG~idd----i~~  294 (438)
                                   .+..++.....+            .++++|+++++    +++++|+++.+ +| +|.+.|    +++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~  240 (452)
T 3n5m_A          162 QAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKA  240 (452)
T ss_dssp             CGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHH
T ss_pred             chhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHH
Confidence                         345555422111            11899999998    56788888888 79 998876    999


Q ss_pred             HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecc
Q 013675          295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNR  362 (438)
Q Consensus       295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~  362 (438)
                      |+++|++||+++++|++|.++...     |.   .+.....+  .|+++++  |.+.++ .++|+++.+++
T Consensus       241 l~~l~~~~~~llI~DEv~~g~g~~-----g~---~~~~~~~~~~~di~t~s--K~l~~G~~~ig~~~~~~~  301 (452)
T 3n5m_A          241 VHETCQKHGALLISDEVICGFGRT-----GK---AFGFMNYDVKPDIITMA--KGITSAYLPLSATAVKRE  301 (452)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTTT-----SS---SSGGGGTTCCCSEEEEC--GGGGTTSSCCEEEEEEHH
T ss_pred             HHHHHHHcCCEEEEecchhCCCcc-----cc---cchhhhcCCCCCEEeec--ccccCCCcceEEEEECHH
Confidence            999999999999999999876431     11   11122222  4777765  775444 67898877643

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.63  E-value=6.5e-14  Score=140.69  Aligned_cols=193  Identities=12%  Similarity=0.071  Sum_probs=136.3

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      ..+|....|..++.+.+.+++.+..+..  +++    +..++|.|+++|+.+++.++.+.     . . |+|+++.++|+
T Consensus        65 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~----i~i~~t~G~~~al~~~~~~l~~~-----~-~-d~Vlv~~P~y~  133 (405)
T 3k7y_A           65 EKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKK----ICTIQCIGGTGAIFVLLEFLKML-----N-V-ETLYVTNPPYI  133 (405)
T ss_dssp             CCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTC----EEEEEEEHHHHHHHHHHHHHHTT-----T-C-CEEEEESSCCH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHcCCCCccccccc----eEEEEcCchHHHHHHHHHHHHhc-----C-C-CEEEEeCCCCH
Confidence            3456667788888888888875444332  221    22378999999999999887631     1 2 79999999999


Q ss_pred             cHHHHHhhcCcEEEEeeC-CC-CCccCHHHHHHhhcc--CcEEEEEecC-CCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          238 AYDKAAQYFNIKLWRVPV-DK-EFRADVKAIKKYINR--NTVLIVGSAP-GFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~-~~-~~~~d~~~Le~~I~~--~t~~vv~~~~-~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      .+..+++..|.+++.+|+ ++ ++.+|+++|++++++  ++++++++.+ +||||.+.+   +++|+++|++|++++++|
T Consensus       134 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~D  213 (405)
T 3k7y_A          134 NHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFD  213 (405)
T ss_dssp             HHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred             hHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEe
Confidence            999999999999999998 44 689999999999974  5677777665 899999976   667889999999999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEE--ecccc
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLY--RNREI  364 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~--r~~~~  364 (438)
                      .+|..+...-.+.....+..+. ....-.++..++.|... .+..+|+++.  .++++
T Consensus       214 e~Y~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~  270 (405)
T 3k7y_A          214 IAYQGFGHTNLEEDVLLIRKFE-EKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEE  270 (405)
T ss_dssp             ESCTTTSSSSTTGGGHHHHHHH-TTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHH
T ss_pred             cCcccccCCCcccchHHHHHHH-hcCCcEEEEeeCCccCCCccccceEEEEEeCCHHH
Confidence            9998654210000000000010 11122466778899953 5667999764  34443

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.63  E-value=3.8e-14  Score=143.91  Aligned_cols=223  Identities=17%  Similarity=0.106  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC--CCeEEecCCC-cCcHHHHHhhcC--
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSA-HSAYDKAAQYFN--  247 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~--~~~Viv~~~~-h~s~~~a~~~~G--  247 (438)
                      ..++.+.+++++|.  +.    +  ++|+||++|+..++++++.+....+|..  +++|++.++. |.....++...|  
T Consensus       120 ~~~l~~~la~~~g~--~~----v--~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~  191 (439)
T 2oat_A          120 LGEYEEYITKLFNY--HK----V--LPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDP  191 (439)
T ss_dssp             HHHHHHHHHHHHTC--SE----E--EEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred             HHHHHHHHHHhcCC--CE----E--EEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCCh
Confidence            44556677777774  22    5  8999999999999999886443333331  3678887766 455555555544  


Q ss_pred             ----------cEEEEeeCCCCCccCHHHHHHhh-ccCcEEEEEecCCCCCcccc----CHHHHHHHHHHcCCeEEEeccc
Q 013675          248 ----------IKLWRVPVDKEFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       248 ----------i~v~~v~~~~~~~~d~~~Le~~I-~~~t~~vv~~~~~~~tG~id----di~~I~~la~~~~i~lhVD~a~  312 (438)
                                .+++.+|.+     |+++|++++ ++++++|+++..++++|.+.    ++++|.++|++||+++++|+++
T Consensus       192 ~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~  266 (439)
T 2oat_A          192 TSYDGFGPFMPGFDIIPYN-----DLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ  266 (439)
T ss_dssp             HHHTTSCSCCTTEEEECSS-----CHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred             hcccCCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence                      466677653     899999999 46788888877777789765    6999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      .|+..     .|... .++......|++++  +|.+.++ ..+|+++.++ ++.+...   ....+     .+..+  +.
T Consensus       267 ~g~g~-----~g~~~-~~~~~~~~~Di~t~--sK~l~~G~~~~G~v~~~~-~~~~~l~---~~~~~-----~t~~~--~~  327 (439)
T 2oat_A          267 TGLAR-----TGRWL-AVDYENVRPDIVLL--GKALSGGLYPVSAVLCDD-DIMLTIK---PGEHG-----STYGG--NP  327 (439)
T ss_dssp             TTTTT-----TSSSS-GGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECH-HHHTTSC---TTSSC-----CSSTT--CH
T ss_pred             cCCcc-----CCcch-hHHHhCCCCcEEEe--cccccCCCCCeEEEEECH-HHHhccC---CCCcc-----cCCCc--CH
Confidence            76532     11100 01111123587754  5985544 4589888875 3332110   00001     11111  11


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...+++.++++.+..   ++..++..++++++.+.|+++
T Consensus       328 ~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l  363 (439)
T 2oat_A          328 LGCRVAIAALEVLEE---ENLAENADKLGIILRNELMKL  363 (439)
T ss_dssp             HHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHh
Confidence            123344455554432   256778888999999999876

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.63  E-value=1.6e-14  Score=143.24  Aligned_cols=240  Identities=13%  Similarity=0.107  Sum_probs=162.1

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccce--eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc---HH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCG--NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA---YD  240 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g--~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s---~~  240 (438)
                      ...+.++|.-+++..+++||++..+     +|  +-..+|+.||+.+..++.+     +|   |+|+..+..|..   .-
T Consensus        95 ce~vD~iE~la~~rak~lF~a~~A~-----w~VNVQP~SGs~AN~avy~All~-----PG---D~ilg~~l~~GGHltHg  161 (490)
T 3ou5_A           95 AEVVDEIELLCQRRALEAFDLDPAQ-----WGVNVQPYSGSPANLAVYTALLQ-----PH---DRIMGLDLPDGGHLTHG  161 (490)
T ss_dssp             -CHHHHHHHHHHHHHHHHTTCCTTT-----EEEECCCSSHHHHHHHHHHHHCC------C---CCEECBC----------
T ss_pred             ChHHHHHHHHHHHHHHHHhCCCccc-----cCCCCCcCCHHHHHHHHHHHHcC-----CC---CEEEecccCCCCccccc
Confidence            4457788999999999999999875     43  5678999999999999874     88   899876665433   22


Q ss_pred             -----HHHhhcCc--EEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675          241 -----KAAQYFNI--KLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       241 -----~a~~~~Gi--~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a  311 (438)
                           +.....|.  +....++|+ ++.+|.+++++...+ +|++|++-.-.+  -...|++++.+||++.|.++++|.+
T Consensus       162 ~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY--~r~id~~~~reIAd~vGA~Lm~DmA  239 (490)
T 3ou5_A          162 YMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMA  239 (490)
T ss_dssp             ------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECG
T ss_pred             ccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccC--ccccCHHHHHHHHhhcccEEEechh
Confidence                 11222233  444555664 899999999998764 799998766554  4577999999999999999999999


Q ss_pred             ccchhhhhhhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc---------chhcccccCCCccC
Q 013675          312 LGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH---------QFVAVTEWSGGLYV  381 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~---------~~~~~~~~~g~~~~  381 (438)
                      +-.+++.    .|. .| |+    +.+|+++.++||.+.||.| |+|+++++.....         .+...-+    ...
T Consensus       240 HiaGLVA----~g~-~psP~----~~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k~~~~~~~~~~kkin----~aV  305 (490)
T 3ou5_A          240 HISGLVA----AKV-IPSPF----KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRIN----FAV  305 (490)
T ss_dssp             GGHHHHH----TTS-SCCGG----GTCSEEEEESSSTTCSCSC-EEEEEECSEEEECC--CCEEECCCHHHHH----HHH
T ss_pred             hhhhhhc----ccc-cCCcc----ccceEEeccccccccCCCc-eEEEeccccccccccccchhHHHHHHHHH----hhc
Confidence            8776662    332 21 33    3479999999999989986 8888886421000         0000000    001


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      -|.++|...-..+++...+++..-...+++..++..++|+.|++.|.+. |+++
T Consensus       306 FPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~v  358 (490)
T 3ou5_A          306 FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSL  358 (490)
T ss_dssp             TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             CccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCee
Confidence            1233444444457777777766556678999999999999999999886 6665

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.62  E-value=4.1e-14  Score=143.38  Aligned_cols=224  Identities=17%  Similarity=0.055  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC--CCeEEecCCCcCc-HHHHHhhcC-
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSAHSA-YDKAAQYFN-  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~--~~~Viv~~~~h~s-~~~a~~~~G-  247 (438)
                      ...++.+.+++++|.  +.    +  ++|+|||+|+..++++++.+....+|+.  +++|+++++.|.. ...++...| 
T Consensus       108 ~~~~l~~~la~~~g~--~~----v--~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~  179 (433)
T 1z7d_A          108 PLGICERYLTNLLGY--DK----V--LMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTT  179 (433)
T ss_dssp             HHHHHHHHHHHHHTC--SE----E--EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------
T ss_pred             HHHHHHHHHHhhcCC--Ce----E--EEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCC
Confidence            445666778888874  23    5  8999999999999999875433223331  3788888876544 444444433 


Q ss_pred             -----------cEEEEeeCCCCCccCHHHHHHhh-ccCcEEEEEecCCCCCcccc----CHHHHHHHHHHcCCeEEEecc
Q 013675          248 -----------IKLWRVPVDKEFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       248 -----------i~v~~v~~~~~~~~d~~~Le~~I-~~~t~~vv~~~~~~~tG~id----di~~I~~la~~~~i~lhVD~a  311 (438)
                                 .+++.+|.+     |+++|++++ ++++++|+++..++++|.+.    ++++|.++|++||+++++|++
T Consensus       180 ~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv  254 (433)
T 1z7d_A          180 KKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEV  254 (433)
T ss_dssp             ------------CEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred             ccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecC
Confidence                       245556543     899999999 57788888877777789865    699999999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~  390 (438)
                      ++|+..     .|... .++......|++++  .|.+.++ ..+|+++.++ ++.+...   ....+.     +..+  +
T Consensus       255 ~~g~g~-----~g~~~-~~~~~~~~~di~t~--sK~l~~G~~~~G~v~~~~-~~~~~l~---~~~~~~-----t~~~--~  315 (433)
T 1z7d_A          255 QTGLGR-----TGKLL-CVHHYNVKPDVILL--GKALSGGHYPISAVLAND-DIMLVIK---PGEHGS-----TYGG--N  315 (433)
T ss_dssp             TTTTTT-----TSSSS-GGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECH-HHHTTCC---TTCCCC-----TTTT--C
T ss_pred             ccCCCc-----CCcch-hhHhcCCCCCEEEE--CccccCCCCCeEEEEECH-HHHhhhc---cccccc-----cCCC--C
Confidence            986532     11100 01111123587755  5985544 3589888765 3332110   000011     1111  1


Q ss_pred             CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ....++..++++.+..   .+..++..++++++.+.|+++
T Consensus       316 ~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l  352 (433)
T 1z7d_A          316 PLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKRE  352 (433)
T ss_dssp             HHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            1113344455554432   245677778888888888754

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.62  E-value=2.1e-14  Score=145.89  Aligned_cols=237  Identities=19%  Similarity=0.151  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcC-cHHHHHhhcCc
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHS-AYDKAAQYFNI  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~-s~~~a~~~~Gi  248 (438)
                      +...++.+.++++++.+.+.    +  ++|+|||+|+.+++++++.+... +|- .+++|++..+.|. ....++...|.
T Consensus        93 ~~~~~l~~~la~~~~~~~~~----v--~~~~ggsea~~~al~~~~~~~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~g~  165 (449)
T 3a8u_X           93 PLSFQLAEKITDLTPGNLNH----V--FFTDSGSECALTAVKMVRAYWRL-KGQATKTKMIGRARGYHGVNIAGTSLGGV  165 (449)
T ss_dssp             HHHHHHHHHHHTTSSTTEEE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEcCcHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCCChhhhhccCC
Confidence            34556777888888766554    6  89999999999999998764432 221 1378888766654 44555554431


Q ss_pred             ------------EEEEeeCCCCC-----ccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675          249 ------------KLWRVPVDKEF-----RAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       249 ------------~v~~v~~~~~~-----~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                                  .++.++++..+     .+|        +++|+++|+    +++++|+++..++++|.+.|    +++|
T Consensus       166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l  245 (449)
T 3a8u_X          166 NGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRN  245 (449)
T ss_dssp             HHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred             hhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHH
Confidence                        35556554222     246        999999997    46777777766677998877    9999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCC--CCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~--~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~  372 (438)
                      .++|++||+++++|++++++...     |.   .+....  ...|+++++  |.+.++ ..+|+++.++ ++.+......
T Consensus       246 ~~l~~~~~~~li~Dev~~~~g~~-----g~---~~~~~~~~~~~di~s~s--K~l~~G~~~~G~~~~~~-~~~~~l~~~~  314 (449)
T 3a8u_X          246 REICNQHNILLVFDEVITGFGRT-----GS---MFGADSFGVTPDLMCIA--KQVTNGAIPMGAVIAST-EIYQTFMNQP  314 (449)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTTT-----SS---SSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEEEH-HHHHHHHTCS
T ss_pred             HHHHHHhCCEEEEeccccCcccc-----Cc---chhhhhcCCCCCEEEEc--ccccCCCCceEEEEECH-HHHHHhhccC
Confidence            99999999999999999765421     10   111111  124777554  884432 3388888764 4332211100


Q ss_pred             cccCCCccCCCCccCCCCCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          373 TEWSGGLYVSPTVAGSRPGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       373 ~~~~g~~~~~~~~~gsr~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      ..+....+   ...++-.+.  ..+++.++++.+..   .+..++..++.+++++.|++++
T Consensus       315 ~~~~~~~~---~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~  369 (449)
T 3a8u_X          315 TPEYAVEF---PHGYTYSAHPVACAAGLAALCLLQK---ENLVQSVAEVAPHFEKALHGIK  369 (449)
T ss_dssp             SCTTSCSS---CCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccccccc---cccCCCcccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHh
Confidence            00000000   001111111  13344445544422   2466778888889999887754

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.62  E-value=9.5e-15  Score=147.97  Aligned_cols=172  Identities=11%  Similarity=0.027  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC
Q 013675          170 ARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN  247 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G  247 (438)
                      .+...++.++++++++.+. ++    +  ++|+||++|+..++++++...   ++   ++|++.+.. |.....+....|
T Consensus        85 ~~~~~~l~~~la~~~~~~~~~~----v--~~~~ggsea~~~al~~~~~~~---~~---~~vi~~~~~yhg~~~~~~~~~~  152 (439)
T 3dxv_A           85 NAPAVTLAERLLASFPGEGTHK----I--WFGHSGSDANEAAYRAIVKAT---GR---SGVIAFAGAYHGCTVGSMAFSG  152 (439)
T ss_dssp             EHHHHHHHHHHHHTTTCTTTEE----E--EEESSHHHHHHHHHHHHHHHH---SC---CEEEEETTCCCCSSHHHHCC--
T ss_pred             CHHHHHHHHHHHHhCCCCCCCE----E--EEeCCHHHHHHHHHHHHHHHh---CC---CEEEEECCCCCCCcHHHHhhcC
Confidence            4566778889999986654 34    5  899999999999999976431   22   567666555 455555544433


Q ss_pred             cE--------------EEEeeCCCCCcc-----CHHHHHHhh----ccCcEEEEEecCCCCCccccC----HHHHHHHHH
Q 013675          248 IK--------------LWRVPVDKEFRA-----DVKAIKKYI----NRNTVLIVGSAPGFPHGIIDP----IQELGELAL  300 (438)
Q Consensus       248 i~--------------v~~v~~~~~~~~-----d~~~Le~~I----~~~t~~vv~~~~~~~tG~idd----i~~I~~la~  300 (438)
                      ..              +..+|.+..+..     |+++|++++    .+++++|+++.+++++|.+.|    +++|.++|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~  232 (439)
T 3dxv_A          153 HSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICR  232 (439)
T ss_dssp             -----------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred             CCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            32              233444322222     799999999    567889999999999999988    999999999


Q ss_pred             HcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEec
Q 013675          301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRN  361 (438)
Q Consensus       301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~  361 (438)
                      +||+++++|++|+++...     |... ..+......|++++  .|.+.++..+|+++.++
T Consensus       233 ~~~~~li~DE~~~g~g~~-----g~~~-~~~~~~~~~di~s~--sK~~~~G~riG~~~~~~  285 (439)
T 3dxv_A          233 AHGILVVCDEVKVGLARS-----GRLH-CFEHEGFVPDILVL--GKGLGGGLPLSAVIAPA  285 (439)
T ss_dssp             HTTCEEEEECTTTCTTTT-----SSSS-GGGGTTCCCSEEEE--CGGGGTTSCCEEEEEEH
T ss_pred             HcCCEEEEeccccCCCcC-----chhh-HHHhcCCCCCEEEE--cchhcCCcceEEEEECH
Confidence            999999999999875321     1100 11111223477755  48855445679887764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.61  E-value=5.6e-14  Score=142.92  Aligned_cols=175  Identities=14%  Similarity=0.152  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhc-C-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYF-N-  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~-G-  247 (438)
                      +...++.++++++++.+.+.    +  ++|+|||+|+..|+++++..... +|. .+++|++..++|......+... | 
T Consensus        87 ~~~~~la~~l~~~~~~~~~~----v--~~~~sGseA~~~al~~~~~~~~~-~G~~~~~~vi~~~~~yhg~~~~~~~~~~~  159 (448)
T 3dod_A           87 VPATQLAETLIDISPKKLTR----V--FYSDSGAEAMEIALKMAFQYWKN-IGKPEKQKFIAMKNGYHGDTIGAVSVGSI  159 (448)
T ss_dssp             HHHHHHHHHHHHHSCTTEEE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEEC----------------
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCchHHHHHHHHHHHHHHHHh-hCCCCCCEEEEECCCCCCccHHHHHhcCC
Confidence            45567778899998765544    6  89999999999999999865332 221 1378998888865543222222 1 


Q ss_pred             -----------cEEEEeeCCCCCcc-----------CHHHHHHhhc---cCcEEEEEecCC-CCCccccC----HHHHHH
Q 013675          248 -----------IKLWRVPVDKEFRA-----------DVKAIKKYIN---RNTVLIVGSAPG-FPHGIIDP----IQELGE  297 (438)
Q Consensus       248 -----------i~v~~v~~~~~~~~-----------d~~~Le~~I~---~~t~~vv~~~~~-~~tG~idd----i~~I~~  297 (438)
                                 ..+..+|.+..++.           |+++|+++|+   +++++|+++..+ ++.|.+.+    +++|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~  239 (448)
T 3dod_A          160 ELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRE  239 (448)
T ss_dssp             -------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHH
T ss_pred             ccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHH
Confidence                       13445555433333           5899999997   457788887777 88887765    999999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecc
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNR  362 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~  362 (438)
                      +|++||+++++|++++++...     |.   .+.....+  .|+++++  |.+.++ ..+|+++.+++
T Consensus       240 l~~~~~~~lI~DEv~~g~g~~-----g~---~~a~~~~~~~~di~t~s--K~l~~G~~~ig~v~~~~~  297 (448)
T 3dod_A          240 LCTTYDVLMIVDEVATGFGRT-----GK---MFACEHENVQPDLMAAG--KGITGGYLPIAVTFATED  297 (448)
T ss_dssp             HHHHTTCEEEEECTTTTTTTT-----SS---SSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEEEHH
T ss_pred             HHHHhCCEEEEeccccCCCcc-----cc---hhhhhhcCCCCCEEEec--ccccCCcCceEEEEECHH
Confidence            999999999999999876431     11   11112222  4777765  886555 36788877643

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.60  E-value=1.3e-14  Score=148.18  Aligned_cols=236  Identities=14%  Similarity=0.041  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC-CCCCeEEecCCCcCcHHHHHhhc---
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-ITRPEMIIPVSAHSAYDKAAQYF---  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G-~~~~~Viv~~~~h~s~~~a~~~~---  246 (438)
                      +...+++++++++++.+.+.    +  ++|+|||+|+..|+++++.+... +| ..+++|++....|......+...   
T Consensus       118 ~~~~~L~e~la~~~~~~~~~----v--~~~~sGseA~~~Alk~a~~~~~~-~g~~g~~~ii~~~~~yhg~~~~~~~~~~~  190 (457)
T 3tfu_A          118 EPAARLAKLLVDITPAGLDT----V--FFSDSGSVSVEVAAKMALQYWRG-RGLPGKRRLMTWRGGYHGDTFLAMSICDP  190 (457)
T ss_dssp             HHHHHHHHHHHHHSSTTEEE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHTTSCC
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEeCcHHHHHHHHHHHHHHHHHh-cCCCCCceEEEEcCCcCCccHHhhcccCC
Confidence            34557778899999766554    6  89999999999999999875433 23 12457877766654433222222   


Q ss_pred             -----------CcEEEEeeCCC--CCccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----HHHHHHHHHHcCCe
Q 013675          247 -----------NIKLWRVPVDK--EFRADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELGELALSHGTC  305 (438)
Q Consensus       247 -----------Gi~v~~v~~~~--~~~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i~~I~~la~~~~i~  305 (438)
                                 ...+..+|...  ....|+++|+++|+   +++++|++.. +++++|.+.+    +++|.++|++||++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gil  270 (457)
T 3tfu_A          191 HGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVL  270 (457)
T ss_dssp             C----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCE
T ss_pred             cccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence                       11334444432  23368999999998   6788898888 8999998876    99999999999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCC
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT  384 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~  384 (438)
                      +++|+++.|+..     .|... .++......|+++++  |.+.++ ..+|+++.+++ +.+......   .+.     .
T Consensus       271 lI~DEv~~g~gr-----~G~~~-a~~~~~~~pdiit~s--K~l~gG~~~lG~v~~~~~-i~~~~~~~~---~~~-----~  333 (457)
T 3tfu_A          271 LIFDEIATGFGR-----TGALF-AADHAGVSPDIMCVG--KALTGGYLSLAATLCTAD-VAHTISAGA---AGA-----L  333 (457)
T ss_dssp             EEEECTTTTTTT-----TSSSS-THHHHTCCCSEEEEC--GGGGTTSSCCEEEEEEHH-HHHHHHHSS---SCS-----C
T ss_pred             EEEEcCccCCcc-----ccchh-HhHhcCCCceEEEEC--hhhhCCCcceEEEEEcHH-HHHHhhccC---CCc-----e
Confidence            999999987643     11100 111111234777665  875444 46888887754 322110000   010     0


Q ss_pred             ccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       385 ~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..++..+....++.+++..+..-.-++..++..++.+++++.|+++
T Consensus       334 ~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l  379 (457)
T 3tfu_A          334 MHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTA  379 (457)
T ss_dssp             CCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGG
T ss_pred             eEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            1111111122233343333321111345667777888888888764

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.60  E-value=2.4e-14  Score=146.77  Aligned_cols=175  Identities=14%  Similarity=0.114  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCc-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNI-  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi-  248 (438)
                      +...++.+.++++++.+.+.    +  ++++||++|+..|+++++.+... +|. .+++||+...+|......+...+. 
T Consensus        99 ~~~~~lae~l~~~~~~~~~~----v--~~~~sGseA~~~aik~a~~~~~~-~g~~~~~~ii~~~~~yHg~t~~~~~~~~~  171 (472)
T 3hmu_A           99 VPAIALAQKLAELAPGDLNH----V--FFAGGGSEANDTNIRMVRTYWQN-KGQPEKTVIISRKNAYHGSTVASSALGGM  171 (472)
T ss_dssp             HHHHHHHHHHHHHSCTTEEE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhCCCCCCE----E--EEeCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCcCCCccHHhhhccCC
Confidence            34556777888888765554    6  89999999999999999975443 232 246788877775554333332221 


Q ss_pred             -----------EEEEeeCCCCCc----cC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675          249 -----------KLWRVPVDKEFR----AD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGE  297 (438)
Q Consensus       249 -----------~v~~v~~~~~~~----~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~  297 (438)
                                 .++.+|....++    .|        +++|+++|+    +++++|++..++++.|.+.+    +++|.+
T Consensus       172 ~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~  251 (472)
T 3hmu_A          172 AGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQR  251 (472)
T ss_dssp             HHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHH
T ss_pred             hhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHH
Confidence                       355566432111    34        788999986    56788888888888888877    999999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCC--CCccEEEeCCCCCCCCC-CCcEEEEEecc
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAP-KGTSVVLYRNR  362 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~--~gvdsis~s~hK~~~~p-~g~g~l~~r~~  362 (438)
                      +|++||+++++|+++.||...     |.   .+....  ...|+++++  |.+.++ ..+|+++.+++
T Consensus       252 l~~~~gillI~DEv~~gfgr~-----G~---~~a~~~~~v~pdi~t~s--K~l~gg~~plG~v~~~~~  309 (472)
T 3hmu_A          252 ICDKYDILLIADEVICGFGRT-----GN---WFGTQTMGIRPHIMTIA--KGLSSGYAPIGGSIVCDE  309 (472)
T ss_dssp             HHHHTTCEEEEECTTTTTTTT-----SS---SCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHH
T ss_pred             HHHHcCCEEEEEccccCCccc-----Cc---cchhHHhCCCCceeeec--hhhhcCCcceEEEEECHH
Confidence            999999999999999876431     10   111111  124788765  875444 46788877643

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.59  E-value=4.8e-14  Score=143.91  Aligned_cols=175  Identities=13%  Similarity=0.073  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhc---
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYF---  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~---  246 (438)
                      +...++.++++++++.+.+.    +  ++|+||++|+..|+++++.+... +|. .+++|++...+|......+...   
T Consensus        95 ~~~~~la~~l~~~~~~~~~~----v--~~~~gGseA~~~al~~~~~~~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~~~  167 (460)
T 3gju_A           95 EASITLAKMIIDRAPKGMSR----V--YFGLSGSDANETNIKLIWYYNNV-LGRPEKKKIISRWRGYHGSGVMTGSLTGL  167 (460)
T ss_dssp             HHHHHHHHHHHHHSCTTEEE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred             HHHHHHHHHHHhhCCCCcCE----E--EEeCchHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence            45667778889888766554    6  89999999999999999865432 232 2478888777765543333222   


Q ss_pred             ----------CcEEEEeeCCC-----CCccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675          247 ----------NIKLWRVPVDK-----EFRAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL  295 (438)
Q Consensus       247 ----------Gi~v~~v~~~~-----~~~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I  295 (438)
                                +..+..+|...     +..++        +++|+++|+    +++++|++..+++++|.+.+    +++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l  247 (460)
T 3gju_A          168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI  247 (460)
T ss_dssp             GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred             cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence                      12456666432     11223        689999987    56788888888888888665    9999


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCC--CCccEEEeCCCCCCCCC-CCcEEEEEecc
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAP-KGTSVVLYRNR  362 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~--~gvdsis~s~hK~~~~p-~g~g~l~~r~~  362 (438)
                      .++|++||+++++|++|+++...     |.   .+....  ...|+++++  |.+.++ ..+|+++.+++
T Consensus       248 ~~l~~~~~~llI~DEv~~g~gr~-----g~---~~~~~~~~~~pdi~t~s--K~l~gG~~~lg~v~~~~~  307 (460)
T 3gju_A          248 QAVLKKYDVLLVADEVVTGFGRL-----GT---MFGSDHYGIKPDLITIA--KGLTSAYAPLSGVIVADR  307 (460)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTT-----SS---SCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHH
T ss_pred             HHHHHHcCCEEEEeccccCCCcc-----cc---cchHhhcCCCCCeeeee--hhhcCCCCCeEEEEECHH
Confidence            99999999999999999876431     10   011111  124777765  885554 46788877653

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.58  E-value=1.2e-14  Score=145.18  Aligned_cols=228  Identities=13%  Similarity=0.096  Sum_probs=147.2

Q ss_pred             CCcccchhH-----HHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC----eE
Q 013675          161 LHLDIFQSV-----ARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP----EM  229 (438)
Q Consensus       161 ~~~~~~~~~-----~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~----~V  229 (438)
                      ..|....+.     .++++.+.+++. ..|.+  +++   ++  ++|+|+++++.++++++.+     +|   +    +|
T Consensus        57 ~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~---~i--~~t~G~~~al~~~~~~l~~-----~G---d~~~~~V  122 (391)
T 3bwn_A           57 SYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDR---YI--VVGTGSTQLCQAAVHALSS-----LA---RSQPVSV  122 (391)
T ss_dssp             SSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSS---EE--EEEEHHHHHHHHHHHHHHH-----TS---SSSSEEE
T ss_pred             hcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCC---eE--EEeCChHHHHHHHHHHhcC-----CC---CCCcceE
Confidence            344445555     667776666655 34443  321   26  8999999999999999864     67   7    99


Q ss_pred             EecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEe
Q 013675          230 IIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVD  309 (438)
Q Consensus       230 iv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD  309 (438)
                      +++.+.|+.+..+++..|++++.+++|.++ ++        .++|++|++++|+||||.+.+  +|++.++++++++++|
T Consensus       123 lv~~P~y~~~~~~~~~~g~~~~~~~~d~~~-l~--------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~D  191 (391)
T 3bwn_A          123 VAAAPFYSTYVEETTYVRSGMYKWEGDAWG-FD--------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHD  191 (391)
T ss_dssp             EECSSCCTHHHHHHHTTCBTTEEEEEESTT-CC--------CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEE
T ss_pred             EEcCCCchhHHHHHHHcCCeEEEecCCHHH-cC--------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEe
Confidence            999999999999999999999888886532 11        257899999999999999986  4544222233999999


Q ss_pred             ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccC
Q 013675          310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG  387 (438)
Q Consensus       310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g  387 (438)
                      ++|...         . .+++.. ..+.+++..+++|. ++++|  +|+++..++++.+...........          
T Consensus       192 e~y~~~---------~-~~~l~~-~~~~~i~~~S~SK~-~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~----------  249 (391)
T 3bwn_A          192 FAYYWP---------H-YTPITR-RQDHDIMLFTFSKI-TGHAGSRIGWALVKDKEVAKKMVEYIIVNSI----------  249 (391)
T ss_dssp             CTTCST---------T-TSCCCC-CBCCSEEEEEHHHH-HSCGGGCEEEEEECCHHHHHHHHHHHHHHHS----------
T ss_pred             CCCCCC---------C-CCcccc-CCCCeEEEEechhh-cCCCccceEEEEecCHHHHHHHHHHhccccc----------
Confidence            998621         0 112332 34568899999998 66666  599877555544322111110000          


Q ss_pred             CCCCchHHHHHHHHHHHc---------HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          388 SRPGGLIAGAWAALMSLG---------QEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g---------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +-+.....++..++..-.         .+.+++..++..++++++.+.|+++|++++
T Consensus       250 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  306 (391)
T 3bwn_A          250 GVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTL  306 (391)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEEC
T ss_pred             CCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            001111112223332210         235677888888999999999998877654

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.58  E-value=1.7e-13  Score=140.60  Aligned_cols=234  Identities=14%  Similarity=0.088  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhc-C
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYF-N  247 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~-G  247 (438)
                      .+...++.++++++++.+.+.    +  ++++||++|+..|+++++.+... +|. .+++||+....|......+... |
T Consensus        96 ~~~~~~la~~l~~~~~~~~~~----v--~~~~sGseA~~~Aik~a~~~~~~-~g~~~~~~vi~~~~~yHg~~~~~~~~~~  168 (476)
T 3i5t_A           96 TSPAARLAEKIATLTPGDLNR----I--FFTTGGSTAVDSALRFSEFYNNV-LGRPQKKRIIVRYDGYHGSTALTAACTG  168 (476)
T ss_dssp             CHHHHHHHHHHHTTSSTTCCE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHTCC
T ss_pred             CHHHHHHHHHHHhcCCCCcCE----E--EEeCchHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCcCcCChhhccccC
Confidence            345667888899998765554    6  89999999999999999875443 332 2468888777765544333322 1


Q ss_pred             c------------EEEEeeCCCC--C-ccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675          248 I------------KLWRVPVDKE--F-RAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG  296 (438)
Q Consensus       248 i------------~v~~v~~~~~--~-~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~  296 (438)
                      .            .+..++....  . ..|        +++|+++++    +++++|++..++++.|.+.+    +++|.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~  248 (476)
T 3i5t_A          169 RTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFK  248 (476)
T ss_dssp             CGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHH
T ss_pred             ChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence            1            2344443211  1 122        789999986    46788999888888887655    99999


Q ss_pred             HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccC-CCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcc
Q 013675          297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS-VQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~-~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~  372 (438)
                      ++|++||+++++|+++.|+..     .|.   .+... ..+  .|+++++  |.+.++ ..+|+++.++ ++.+......
T Consensus       249 ~lc~~~gillI~DEv~~g~gr-----~G~---~~~~~~~~~v~pdi~t~s--K~l~~G~~plg~v~~~~-~i~~~~~~~~  317 (476)
T 3i5t_A          249 AICEKHDILYISDEVVTGFGR-----CGE---WFASEKVFGVVPDIITFA--KGVTSGYVPLGGLAISE-AVLARISGEN  317 (476)
T ss_dssp             HHHHHTTCEEEEECTTTTTTT-----TSS---SCHHHHTTCCCCSEEEEC--GGGGTTSSCCEEEEECH-HHHHTTSGGG
T ss_pred             HHHHHcCCEEEEEecccCCcc-----ccC---ceeeecccCCCcchhhhh--hhhcCCCcCeEEEEECH-HHHHHHhcCC
Confidence            999999999999999987643     111   11112 223  3788765  885555 5678877754 3332211000


Q ss_pred             cccCCCccCCCCccCCC-CCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          373 TEWSGGLYVSPTVAGSR-PGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       373 ~~~~g~~~~~~~~~gsr-~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                        +....    ...+.. .+.  ..++..++++.+..   ++..++..++.+++++.|+++
T Consensus       318 --~~~~~----~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l  369 (476)
T 3i5t_A          318 --AKGSW----FTNGYTYSNQPVACAAALANIELMER---EGIVDQAREMADYFAAALASL  369 (476)
T ss_dssp             --CTTCE----ECCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTT
T ss_pred             --ccccc----ccccCCCCcCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHH
Confidence              00000    011111 111  12333444443322   456677777888888888764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.58  E-value=6e-14  Score=141.16  Aligned_cols=221  Identities=18%  Similarity=0.120  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCc-CcHHHHHhhcCcE-
Q 013675          173 EAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH-SAYDKAAQYFNIK-  249 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h-~s~~~a~~~~Gi~-  249 (438)
                      ..++++.++++++.+. ++    +  ++|+||++|+.++++.++...  .+    ++|++..+.| .....++...|.+ 
T Consensus        86 ~~~l~~~la~~~~~~~~~~----v--~~~~g~~~a~~~~~~~a~~~~--~~----~~vi~~~p~y~~~~~~~~~~~g~~~  153 (426)
T 1sff_A           86 YLELCEIMNQKVPGDFAKK----T--LLVTTGSEAVENAVKIARAAT--KR----SGTIAFSGAYHGRTHYTLALTGKVN  153 (426)
T ss_dssp             HHHHHHHHHHHSSCSSCEE----E--EEESSHHHHHHHHHHHHHHHH--TC----CEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred             HHHHHHHHHHhCCcccccE----E--EEeCchHHHHHHHHHHHHHhh--CC----CeEEEECCCcCCCchHhhhhcCCcc
Confidence            4456667888883232 33    5  999999999999999554321  22    3677776665 4455566666643 


Q ss_pred             ------------EEEeeCCC-----CCccCHHHHHHhhc-----cCcEEEEEec-CCCCCccccC----HHHHHHHHHHc
Q 013675          250 ------------LWRVPVDK-----EFRADVKAIKKYIN-----RNTVLIVGSA-PGFPHGIIDP----IQELGELALSH  302 (438)
Q Consensus       250 ------------v~~v~~~~-----~~~~d~~~Le~~I~-----~~t~~vv~~~-~~~~tG~idd----i~~I~~la~~~  302 (438)
                                  ++.+|++.     ++.+|+++|+++++     +++++|+++. ++| +|.+.+    +++|.++|++|
T Consensus       154 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~  232 (426)
T 1sff_A          154 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEH  232 (426)
T ss_dssp             TTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHc
Confidence                        77788763     24579999999997     4677777754 455 997766    99999999999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccC
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYV  381 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~  381 (438)
                      |+++++|++|+++...     |. .-.++.....+|++++  +|++ ++ ..+|+++.+++ +.+....      .. . 
T Consensus       233 ~~~li~De~~~~~~~~-----g~-~~~~~~~~~~~di~s~--sK~~-~~GlriG~~~~~~~-~~~~l~~------~~-~-  294 (426)
T 1sff_A          233 GIMLIADEVQSGAGRT-----GT-LFAMEQMGVAPDLTTF--AKSI-AGGFPLAGVTGRAE-VMDAVAP------GG-L-  294 (426)
T ss_dssp             TCEEEEECTTTTTTTT-----SS-SSGGGGTTSCCSEEEE--CGGG-GTSSCCEEEEEEHH-HHTTSCT------TS-B-
T ss_pred             CCEEEEechhhccCcc-----cc-hhhhhhcCCCCCEEEE--cccc-cCCCceEEEEEcHH-HHhhhcc------CC-c-
Confidence            9999999999875421     10 0011211123577654  5994 45 33699888753 3321100      00 0 


Q ss_pred             CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      ..+.  +-+....+++.++++.+..+   +..++..++++++.+.|++
T Consensus       295 ~~~~--~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~  337 (426)
T 1sff_A          295 GGTY--AGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLA  337 (426)
T ss_dssp             CCSS--SSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHH
T ss_pred             CcCC--CCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence            0000  11111233455555554332   4556777777888877765

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.57  E-value=9.3e-14  Score=141.73  Aligned_cols=175  Identities=15%  Similarity=0.093  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcC-
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFN-  247 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~G-  247 (438)
                      .+...++.++++++++.+.+.    +  ++|+||++|+..|+++++.+... .|. .+++|++..++|......+...+ 
T Consensus        93 ~~~~~~la~~l~~~~~~~~~~----v--~~~~ggseA~~~al~~~~~~~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~~  165 (459)
T 4a6r_A           93 HPAVVELSSLLAEVTPAGFDR----V--FYTNSGSESVDTMIRMVRRYWDV-QGKPEKKTLIGRWNGYHGSTIGGASLGG  165 (459)
T ss_dssp             CHHHHHHHHHHHHHSCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             CHHHHHHHHHHHHhCCCCCCE----E--EEeCchHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCccHHHHhhcC
Confidence            345667888999998876655    6  99999999999999999875433 232 24788888877665443333321 


Q ss_pred             ------------cEEEEeeCCC-----CCccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHH
Q 013675          248 ------------IKLWRVPVDK-----EFRAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQE  294 (438)
Q Consensus       248 ------------i~v~~v~~~~-----~~~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~  294 (438)
                                  ..+..++...     ++ +|        +++|+++++    +++++|++...++++|.+.+    +++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~  244 (459)
T 4a6r_A          166 MKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPE  244 (459)
T ss_dssp             CTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHH
T ss_pred             ChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHH
Confidence                        1345555322     12 45        889999987    45677777777777788776    999


Q ss_pred             HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccC--CCCccEEEeCCCCCCCCC-CCcEEEEEecc
Q 013675          295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS--VQGVTSISVDVHKYGLAP-KGTSVVLYRNR  362 (438)
Q Consensus       295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~--~~gvdsis~s~hK~~~~p-~g~g~l~~r~~  362 (438)
                      |.++|++||+++++|++|.|+...     |.   .+...  ....|+++++  |.+.++ ..+|+++.+++
T Consensus       245 l~~l~~~~~~llI~DEv~~g~gr~-----G~---~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~~~  305 (459)
T 4a6r_A          245 IERICRKYDVLLVADEVICGFGRT-----GE---WFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFVGKR  305 (459)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTTT-----SS---SSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEECHH
T ss_pred             HHHHHHHcCCEEEEeccccCCCcc-----cc---cchHhhcCCCCCeeehh--hhhcCCCCCccceeeCHH
Confidence            999999999999999999876431     10   01111  1124777765  874443 56788777543

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.55  E-value=8.3e-14  Score=140.80  Aligned_cols=163  Identities=15%  Similarity=0.171  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc-Cc--
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF-NI--  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~-Gi--  248 (438)
                      ...++.+.+++.++ +.+.    +  ++|+|||+|+..|+++++..   ..+   ++|++..++|..+...+... |.  
T Consensus        96 ~~~~l~~~la~~~~-~~~~----v--~~~~sGsea~~~ai~~a~~~---~~~---~~vi~~~~~yhg~~~~~~~~~g~~~  162 (434)
T 3l44_A           96 LEVKFAKMLKEAMP-ALDK----V--RFVNSGTEAVMTTIRVARAY---TGR---TKIMKFAGCYHGHSDLVLVAAGSGP  162 (434)
T ss_dssp             HHHHHHHHHHHHCT-TCSE----E--EEESSHHHHHHHHHHHHHHH---HCC---CEEEEETTCCCCSSGGGGBC-----
T ss_pred             HHHHHHHHHHHhCC-CCCE----E--EEeCchHHHHHHHHHHHHHh---hCC---CEEEEEcCccCCCcHHHHhhcCCcc
Confidence            34456667888886 3443    5  89999999999999998753   123   68888877765543322222 22  


Q ss_pred             -----------------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCC
Q 013675          249 -----------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGT  304 (438)
Q Consensus       249 -----------------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i  304 (438)
                                       ++..+|.+     |+++|+++++   +++++|+++.+++++|.+.|    +++|.++|++||+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~i  237 (434)
T 3l44_A          163 STLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGA  237 (434)
T ss_dssp             --CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTC
T ss_pred             cccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCC
Confidence                             22222221     8999999997   46778888877778888887    9999999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEec
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRN  361 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~  361 (438)
                      ++|+|++|++| ..     |. ...++......|+++++  |.+.++.++|+++.++
T Consensus       238 llI~DEv~~g~-~~-----g~-~~~~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~  285 (434)
T 3l44_A          238 LVIYDEVITAF-RF-----MY-GGAQDLLGVTPDLTALG--KVIGGGLPIGAYGGKK  285 (434)
T ss_dssp             EEEEECTTTTT-TS-----SS-SCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECH
T ss_pred             EEEEeccccce-ec-----cc-cHHHHHcCCCCCeeehh--hhhcCCcCeeeEEEcH
Confidence            99999999876 21     11 00011111224666655  7755667889886653

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.55  E-value=2.1e-13  Score=138.77  Aligned_cols=232  Identities=13%  Similarity=0.046  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh---cCC---CCCeEEecCCCcCcHHH-H
Q 013675          171 RFEAEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK---RGI---TRPEMIIPVSAHSAYDK-A  242 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~---~G~---~~~~Viv~~~~h~s~~~-a  242 (438)
                      +...++.+.++++++ .+.++    +  ++|+|||+|+..|+++++.+...+   .|.   .+++|++..+.|..... +
T Consensus       101 ~~~~~la~~la~~~~~~~~~~----v--~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~  174 (449)
T 2cjg_A          101 VAMARFVETFARVLGDPALPH----L--FFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT  174 (449)
T ss_dssp             HHHHHHHHHHHHHHCCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG
T ss_pred             HHHHHHHHHHHHhcCCCCCCE----E--EEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccch
Confidence            345567778888887 33343    6  999999999999999887543311   010   12789998876554322 1


Q ss_pred             Hhh--------cCc-----EEEEeeCCC--CC--------ccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----H
Q 013675          243 AQY--------FNI-----KLWRVPVDK--EF--------RADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----I  292 (438)
Q Consensus       243 ~~~--------~Gi-----~v~~v~~~~--~~--------~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i  292 (438)
                      ...        .+.     +++.+|.+.  ..        ..|+++|+++|+   ++|++|+++..++++|.+.+    +
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l  254 (449)
T 2cjg_A          175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFF  254 (449)
T ss_dssp             GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHH
T ss_pred             hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHH
Confidence            111        122     567777653  11        357778999995   57888888877789997666    9


Q ss_pred             HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc
Q 013675          293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV  372 (438)
Q Consensus       293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~  372 (438)
                      ++|.++|++||+++++|++|+|+...     |... .++......|+++++  |++  |  +|+++.++ ++......  
T Consensus       255 ~~l~~l~~~~g~lli~DEv~~g~g~~-----g~~~-~~~~~~~~~di~t~s--K~l--~--iG~~~~~~-~~~~~l~~--  319 (449)
T 2cjg_A          255 AAMRELCDEFDALLIFDEVQTGCGLT-----GTAW-AYQQLDVAPDIVAFG--KKT--Q--VCGVMAGR-RVDEVADN--  319 (449)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTT-----SSSS-THHHHTCCCSEEEEC--GGG--S--SEEEEECG-GGGGSTTC--
T ss_pred             HHHHHHHHHCCcEEEEeccccCCCcc-----Ccce-eecccCCCceEEEec--Ccc--c--EEEEEECH-HHhhhhhh--
Confidence            99999999999999999999876431     1100 011111235777765  985  4  67877764 44332100  


Q ss_pred             cccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       373 ~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                       .+.+......+..+  +....+++.++++.+..   ++..++..++.+++.+.|++
T Consensus       320 -~~~~~~~~~~t~~~--n~~~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~  370 (449)
T 2cjg_A          320 -VFAVPSRLNSTWGG--NLTDMVRARRILEVIEA---EGLFERAVQHGKYLRARLDE  370 (449)
T ss_dssp             -TTTSTTSSCCSSSS--CHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHH
T ss_pred             -cccCCcccccCCCC--CHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH
Confidence             00000000011111  11123344455544423   34567777888888888875

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.54  E-value=5.3e-14  Score=141.96  Aligned_cols=167  Identities=19%  Similarity=0.168  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH-HHHHhhcCc-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY-DKAAQYFNI-  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~-~~a~~~~Gi-  248 (438)
                      +...++.++++++++ +.+.    +  ++|+|||+|+..+++.++..    .|  +++|++..++|... ..+....|. 
T Consensus        92 ~~~~~la~~l~~~~~-~~~~----v--~~~~ggsea~~~al~~a~~~----~~--~~~vi~~~~~yhg~~~~~~~~~~~~  158 (427)
T 3fq8_A           92 ALENVLAEMVNDAVP-SIEM----V--RFVNSGTEACMAVLRIMRAY----TG--RDKIIKFEGCYHGHADMFLVKAGSG  158 (427)
T ss_dssp             HHHHHHHHHHHHHST-TCSE----E--EEESSHHHHHHHHHHHHHHH----HC--CCEEEEEETCCCCSCGGGCSSCCTH
T ss_pred             HHHHHHHHHHHHhCC-CCCE----E--EEeCCHHHHHHHHHHHHHHh----hC--CCEEEEECCCcCCCCHHHHHhcCCc
Confidence            456677888999987 4443    5  99999999999999887743    12  25777766665442 222211111 


Q ss_pred             ------------------EEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675          249 ------------------KLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHG  303 (438)
Q Consensus       249 ------------------~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~  303 (438)
                                        .+..+|.+     |+++|++++++   ++++|+++.+++++|.+.|    +++|.++|++||
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~  233 (427)
T 3fq8_A          159 VATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD  233 (427)
T ss_dssp             HHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTT
T ss_pred             ccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence                              13333332     89999999976   6889999988889999988    999999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR  365 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~  365 (438)
                      +++++|++|+++ ..     |. ....+......|+++++  |.+.++..+|+++.+ +++.
T Consensus       234 ~~li~DEv~~g~-~~-----g~-~~~~~~~~~~~di~t~s--K~~~~G~~~G~~~~~-~~~~  285 (427)
T 3fq8_A          234 ALLVFDEVITGF-RI-----AY-GGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGK-REIM  285 (427)
T ss_dssp             CEEEEECTTTBT-TT-----BT-THHHHHTTCCCSEEEEC--GGGGTTSSCEEEEEC-HHHH
T ss_pred             CEEEEecccccc-cc-----Cc-chhhHhcCCCCChhhhh--hhhhCCcceEEEEEc-HHHH
Confidence            999999999876 21     00 00011111124677666  885554558887665 4443

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.54  E-value=1.9e-13  Score=139.32  Aligned_cols=173  Identities=19%  Similarity=0.169  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc-C
Q 013675          170 ARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF-N  247 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~-G  247 (438)
                      .+...++.++++++++.+. +.    +  ++|+|||+|+..|++.++..    .|  +++|++...+|......+... +
T Consensus       106 ~~~~~~la~~l~~~~~~~~~~~----v--~~~~sGseA~~~alk~a~~~----~g--~~~ii~~~~~yhg~~~~~~~~~~  173 (453)
T 4ffc_A          106 YEQYVQVAELLNALTPGDHDKR----T--ALFNSGAEAVENAIKVARLA----TG--RPAVVAFDNAYHGRTNLTMALTA  173 (453)
T ss_dssp             CHHHHHHHHHHHHHSSCSSCEE----E--EEESSHHHHHHHHHHHHHHH----HC--CCEEEEETTCCCCSSHHHHHHCC
T ss_pred             CHHHHHHHHHHHHhCCCCCCcE----E--EEeCcHHHHHHHHHHHHHHh----cC--CCEEEEEcCccCCcchHHHhhcC
Confidence            3455677888999987542 33    5  89999999999999988753    22  267888777755443333222 1


Q ss_pred             -------------cEEEEeeCCC----CCcc--------CHHHHHHhhccCcEEEEEecCCCCC-ccccC----HHHHHH
Q 013675          248 -------------IKLWRVPVDK----EFRA--------DVKAIKKYINRNTVLIVGSAPGFPH-GIIDP----IQELGE  297 (438)
Q Consensus       248 -------------i~v~~v~~~~----~~~~--------d~~~Le~~I~~~t~~vv~~~~~~~t-G~idd----i~~I~~  297 (438)
                                   ..+..+|.+.    ...+        ++++|++++++++.+++++.|++++ |.+.+    +++|.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~  253 (453)
T 4ffc_A          174 KSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTA  253 (453)
T ss_dssp             CCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             CCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHH
Confidence                         1466666641    1112        2577777776555444445555554 55655    999999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +|++||+++++|++|.++...     |. .-.++......|+++++  |.+.++..+|+++.+++
T Consensus       254 l~~~~~~llI~DEv~~g~g~~-----g~-~~a~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~~~  310 (453)
T 4ffc_A          254 WASENGVVFIADEVQTGFART-----GA-WFASEHEGIVPDIVTMA--KGIAGGMPLSAVTGRAE  310 (453)
T ss_dssp             HHHHHTCEEEEECTTTTTTTT-----SS-SSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEHH
T ss_pred             HHHHcCCEEEEecCccCCCcc-----cc-cchhhhcCCCcchHhhh--hhhcCCcCeEEEEECHH
Confidence            999999999999999876431     11 00011111124777765  88555567898877643

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.54  E-value=2e-14  Score=149.93  Aligned_cols=156  Identities=13%  Similarity=0.122  Sum_probs=119.1

Q ss_pred             eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc--CcEEEEeeCCC--CCccCHHHHHHhhccC
Q 013675          198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF--NIKLWRVPVDK--EFRADVKAIKKYINRN  273 (438)
Q Consensus       198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~--Gi~v~~v~~~~--~~~~d~~~Le~~I~~~  273 (438)
                      ++|+|+++++.+++.++..+....+|   ++|+++.++|+.+..++...  |++++.+|+++  ++.+|+++|+++++++
T Consensus       169 ~~t~G~~eal~~~~~~l~~~~l~~~G---d~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~  245 (546)
T 2zy4_A          169 FAVEGGTAAMAYIFESLKLNGLLKAG---DKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPA  245 (546)
T ss_dssp             EEEEHHHHHHHHHHHHHHHTTSSCTT---CEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTT
T ss_pred             EEECCHHHHHHHHHHHhhhhhcCCCC---CEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCC
Confidence            89999999999999875211011256   89999999999999886654  68999999875  4679999999999888


Q ss_pred             cEEEEEecCCCCCccccC---HHHHHHHH--HHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC
Q 013675          274 TVLIVGSAPGFPHGIIDP---IQELGELA--LSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG  348 (438)
Q Consensus       274 t~~vv~~~~~~~tG~idd---i~~I~~la--~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~  348 (438)
                      +++|++++|+||||.+.+   +++|.++|  +++|+++++|++|+.+...      . . ++.....+.+++..|++|.+
T Consensus       246 ~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~------~-~-s~~~~~~~~~i~~~S~SK~~  317 (546)
T 2zy4_A          246 IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD------F-Q-SLFAICPENTLLVYSFSKYF  317 (546)
T ss_dssp             EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT------C-C-CHHHHCGGGEEEEEESTTTT
T ss_pred             CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc------C-c-CHHHhCCCCEEEEEeCcccc
Confidence            999999999999999977   56678888  7899999999999876531      0 1 11111124578889999984


Q ss_pred             C-CCCCcEEEEEecccc
Q 013675          349 L-APKGTSVVLYRNREI  364 (438)
Q Consensus       349 ~-~p~g~g~l~~r~~~~  364 (438)
                      . .+..+|+++..++++
T Consensus       318 g~~GlRiG~~~~~~~~l  334 (546)
T 2zy4_A          318 GATGWRLGVVAAHQQNV  334 (546)
T ss_dssp             TCGGGCEEEEEEESSCH
T ss_pred             CCCCcceEEEEECCHHH
Confidence            2 233489988876533

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.53  E-value=6.5e-13  Score=135.21  Aligned_cols=171  Identities=19%  Similarity=0.137  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc--
Q 013675          170 ARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF--  246 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~--  246 (438)
                      .+...++.++++++++.+. +.    +  ++|+|||+|+..|+++++.+    .|  +++|++...+|......+...  
T Consensus       103 ~~~~~~la~~l~~~~~~~~~~~----v--~~~~sGseA~~~Alk~a~~~----~g--~~~ii~~~~~yhG~~~~~~~~~~  170 (451)
T 3oks_A          103 YEGYVAVCEQLNRLTPVRGDKR----S--ALFNSGSEAVENAVKIARSH----TH--KPAVVAFDHAYHGRTNLTMALTA  170 (451)
T ss_dssp             CHHHHHHHHHHHHHSSCCSSEE----E--EEESSHHHHHHHHHHHHHHH----HC--CCEEEEETTCCCCSSHHHHHHCC
T ss_pred             CHHHHHHHHHHHHhCCcCCCCE----E--EEeCcHHHHHHHHHHHHHHh----cC--CCeEEEEcCCcCCccHHHHHhcC
Confidence            3455678888999987542 33    5  89999999999999998853    22  267887777755433332222  


Q ss_pred             ------------CcEEEEeeCCCCC-------------ccCHHHHHHhhc----c-CcEEEEEecCCCCCccccC----H
Q 013675          247 ------------NIKLWRVPVDKEF-------------RADVKAIKKYIN----R-NTVLIVGSAPGFPHGIIDP----I  292 (438)
Q Consensus       247 ------------Gi~v~~v~~~~~~-------------~~d~~~Le~~I~----~-~t~~vv~~~~~~~tG~idd----i  292 (438)
                                  ...++.+|....+             ..+++.+++.+.    + ++++|++...+++.|.+.+    +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l  250 (451)
T 3oks_A          171 KVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFL  250 (451)
T ss_dssp             CCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHH
T ss_pred             CCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHH
Confidence                        1156677765211             123444444443    3 4556665555555566655    9


Q ss_pred             HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCC--CccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~--gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      ++|.++|++||+++++|++|.++...     |.   .+.....  ..|+++++  |.+.++..+|+++.+++
T Consensus       251 ~~l~~l~~~~g~~lI~DEv~~g~g~~-----g~---~~~~~~~~~~pdi~t~s--K~l~~G~~iG~v~~~~~  312 (451)
T 3oks_A          251 PTLLDWCRKNDVVFIADEVQTGFART-----GA---MFACEHEGIDPDLIVTA--KGIAGGLPLSAVTGRAE  312 (451)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTT-----SS---SSGGGGGTCCCSEEEEC--GGGGTTSSCEEEEEEHH
T ss_pred             HHHHHHHHHcCCEEEEEecccCCCcc-----cc---chhhhhcCCCCCeeeeh--hhhhCCcceEEEEECHH
Confidence            99999999999999999999876431     11   1111222  24777665  88655567888877643

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.52  E-value=1.4e-13  Score=140.02  Aligned_cols=221  Identities=14%  Similarity=0.127  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH-h---
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-Q---  244 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~-~---  244 (438)
                      ..+++.++.++++++++ +.+.    +  ++|+||++|+..++++++...   .+   ++||+.++.|..+...+ .   
T Consensus        95 ~~~~~~~la~~l~~~~~-~~~~----v--~~~~gg~eA~~~al~~ar~~~---~~---~~vi~~~~~yhg~~~~~~~~~~  161 (453)
T 2cy8_A           95 SHPLEVRWAERIVAAFP-SIRK----L--RFTGSGTETTLLALRVARAFT---GR---RMILRFEGHYHGWHDFSASGYN  161 (453)
T ss_dssp             SCHHHHHHHHHHHHHCT-TCSE----E--EEESCHHHHHHHHHHHHHHHH---CC---CEEEEECC--------------
T ss_pred             CCHHHHHHHHHHHhhCC-CCCE----E--EEeCCHHHHHHHHHHHHHHhh---CC---CEEEEEcCCcCCCchhhHhhcC
Confidence            45678889999999886 4443    5  899999999999999976421   22   57888777665433211 1   


Q ss_pred             -------hcCcE------EEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCC
Q 013675          245 -------YFNIK------LWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGT  304 (438)
Q Consensus       245 -------~~Gi~------v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i  304 (438)
                             ..|+.      +..+|.     .|+++|+++++   +++++|+++..++++|.+.|    +++|.++|++||+
T Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~  236 (453)
T 2cy8_A          162 SHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA  236 (453)
T ss_dssp             --------------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC
T ss_pred             CccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence                   12332      334443     38999999997   46778777776677998877    9999999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCcc--CCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCC
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFDF--SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVS  382 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~--~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~  382 (438)
                      ++++|++++++ ..     |.   .+..  .....|++++  .|.+.++..+|+++.++ ++.+.....   -.+..+  
T Consensus       237 ~lI~DEv~~g~-~~-----g~---~~~~~~~~~~~di~s~--sK~l~~G~~~G~v~~~~-~~~~~l~~~---~~~~~~--  299 (453)
T 2cy8_A          237 LFILDEVISGF-RV-----GN---HGMQALLDVQPDLTCL--AKASAGGLPGGILGGRE-DVMGVLSRG---SDRKVL--  299 (453)
T ss_dssp             EEEEECTTTTT-TT-----CT---THHHHHHTCCCSEEEE--EGGGGTTSSCEEEEECH-HHHTTSSSC---C-------
T ss_pred             EEEEecCcccc-cc-----Cc---hhhhHHhCCCCcEEEE--ChhhhCCcceEEEechH-HHHHHhccc---cCCCce--
Confidence            99999999876 21     10   0111  1112466654  49865556789988774 333211000   000000  


Q ss_pred             CCccCCCCCc--hHHHHHHHHHH-HcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          383 PTVAGSRPGG--LIAGAWAALMS-LGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       383 ~~~~gsr~~~--~ia~~~aal~~-~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                        ..++-.+.  ..++..++++. +    .++..++..++.+++.+.|+++
T Consensus       300 --~~~t~~~n~~~~aa~~aal~~~~----~~~~~~~~~~~~~~l~~~L~~~  344 (453)
T 2cy8_A          300 --HQGTFTGNPITAAAAIAAIDTIL----EDDVCAKINDLGQFAREAMNHL  344 (453)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHH
T ss_pred             --eCCCCCCCHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHH
Confidence              00111111  12333445544 3    2455677777888888877653

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.51  E-value=3.8e-13  Score=136.00  Aligned_cols=218  Identities=16%  Similarity=0.141  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH-HHh-----
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK-AAQ-----  244 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~-a~~-----  244 (438)
                      +...++.++++++++ +.+.    +  ++|+|||+|+.++++++|...   .+   ++|++..++|..... +..     
T Consensus        96 ~~~~~l~~~la~~~~-~~~~----v--~~~~sgseA~~~al~~ar~~~---~~---~~vi~~~~~yhg~~~~~~~~~~~~  162 (434)
T 2epj_A           96 EAEVLLAEKILGYVK-RGGM----I--RFVNSGTEATMTAIRLARGYT---GR---DLILKFDGCYHGSHDAVLVAAGSA  162 (434)
T ss_dssp             HHHHHHHHHHHHHHC-TTCE----E--EEESSHHHHHHHHHHHHHHHH---CC---CEEEEEETCCCCSSGGGSEECC--
T ss_pred             HHHHHHHHHHHHhCC-CCCE----E--EEeCCHHHHHHHHHHHHHHhh---CC---CeEEEEcCCcCCCCHHHHHhcCCC
Confidence            455667778888885 3333    5  899999999999999876421   22   578777766544322 111     


Q ss_pred             --------hcCc------EEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675          245 --------YFNI------KLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHG  303 (438)
Q Consensus       245 --------~~Gi------~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~  303 (438)
                              ..|+      ++..+|.     .|+++|++++++   ++++|+++..++++|.+.|    +++|.++|++||
T Consensus       163 ~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g  237 (434)
T 2epj_A          163 AAHYGVPTSAGVPEAVARLTLVTPY-----NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESG  237 (434)
T ss_dssp             ----CEESSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCCCCCCCcccCceEecCC-----CCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcC
Confidence                    1243      3555554     289999999974   6778877777778999887    999999999999


Q ss_pred             CeEEEeccccchhh--hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC
Q 013675          304 TCLHVDLCLGGFVL--PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV  381 (438)
Q Consensus       304 i~lhVD~a~gg~~~--pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~  381 (438)
                      +++++|++++|+..  ++.         ++......|++++  +|.+.++..+|+++.++ ++.+....     .+..+ 
T Consensus       238 ~~lI~DEv~~g~~~g~~~~---------~~~~~~~~di~s~--sK~l~~G~~~G~v~~~~-~~~~~l~~-----~~~~~-  299 (434)
T 2epj_A          238 ALLILDEVVTGFRLGLEGA---------QGYFNIEGDIIVL--GKIIGGGFPVGAVAGSR-EVMSLLTP-----QGKVF-  299 (434)
T ss_dssp             CEEEEEETTTTTTSSTTHH---------HHHHTCCCSEEEE--EGGGGTTSSCEEEEECH-HHHTTBTT-----TSSBC-
T ss_pred             CEEEEEcchhceeCCcchh---------hHHhCCCCCeeee--cchhcCCcceeeeeecH-HHHHhhcc-----CCCcc-
Confidence            99999999987621  010         0111112466655  49855545688888764 33321110     00000 


Q ss_pred             CCCccCCCCCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          382 SPTVAGSRPGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       382 ~~~~~gsr~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                         ..++-.+.  ..++..++++.+..   ++..++..++++++.+.|+++
T Consensus       300 ---~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~  344 (434)
T 2epj_A          300 ---NAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEV  344 (434)
T ss_dssp             ---CCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence               01111111  23344445544422   356677777888888887654

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.51  E-value=4.6e-13  Score=135.18  Aligned_cols=227  Identities=15%  Similarity=0.074  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHHhhc---
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYF---  246 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~~~~---  246 (438)
                      +...++.+.++++++.+.++    +  ++|+||++|+..++++++..    +|  +++|++..+.|.. ...+....   
T Consensus        85 ~~~~~l~~~la~~~~~~~~~----v--~~~~gg~ea~~~a~~~~~~~----~~--~~~vi~~~~~yhg~~~~~~~~~~~~  152 (433)
T 1zod_A           85 RPVVDLATRLANITPPGLDR----A--LLLSTGAESNEAAIRMAKLV----TG--KYEIVGFAQSWHGMTGAAASATYSA  152 (433)
T ss_dssp             HHHHHHHHHHHHHSCTTCCE----E--EEESCHHHHHHHHHHHHHHH----HT--CCEEEEETTCCCCSSHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHhCCCCcCE----E--EEeCchHHHHHHHHHHHHHh----hC--CCeEEEECCCcCCCChhHHhhcCCc
Confidence            34556777889999876554    6  89999999999999987642    22  2678888776544 33333221   


Q ss_pred             --------CcEEEEeeCCC----CC--------ccCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHHH
Q 013675          247 --------NIKLWRVPVDK----EF--------RADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGEL  298 (438)
Q Consensus       247 --------Gi~v~~v~~~~----~~--------~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~l  298 (438)
                              ...++.++++.    .+        .+|+++|+++++    +++++|+++..++++|.+.+    +++|+++
T Consensus       153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l  232 (433)
T 1zod_A          153 GRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRK  232 (433)
T ss_dssp             CCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHH
T ss_pred             cccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHH
Confidence                    11344555432    11        257999999997    46677776655678997655    9999999


Q ss_pred             HHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC
Q 013675          299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG  378 (438)
Q Consensus       299 a~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~  378 (438)
                      |++||+++++|++|+++...     |. .-.++......|+++++  |.+.++.++|+++.++ ++.+.... .....+ 
T Consensus       233 ~~~~~~~li~DEv~~~~g~~-----g~-~~~~~~~~~~~di~s~s--K~~~~G~~ig~~~~~~-~~~~~~~~-~~~~~~-  301 (433)
T 1zod_A          233 CEARGMLLILDEAQTGVGRT-----GT-MFACQRDGVTPDILTLS--KTLGAGLPLAAIVTSA-AIEERAHE-LGYLFY-  301 (433)
T ss_dssp             HHHHTCEEEEECTTTTTTTT-----SS-SSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEECH-HHHHHHHH-TTCCCC-
T ss_pred             HHHhCCEEEEeccccCCCcC-----ch-HhHHhhcCCCCCEEEec--ccccCCCCeeEEEEhH-HHHHhhcc-CCCCCC-
Confidence            99999999999999876421     10 00011111234776554  8755556789988765 33322111 000000 


Q ss_pred             ccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          379 LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       379 ~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                          .+..+  +....+++.++++.+..+   +..++..++.+++.+.|++
T Consensus       302 ----~t~~~--~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~  343 (433)
T 1zod_A          302 ----TTHVS--DPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLD  343 (433)
T ss_dssp             ----CTTTT--CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCc--CHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH
Confidence                01100  111123344555444332   3456666777777777765

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.49  E-value=2.5e-13  Score=137.15  Aligned_cols=218  Identities=16%  Similarity=0.173  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC-cHHHHHhhcCcE-
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS-AYDKAAQYFNIK-  249 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~-s~~~a~~~~Gi~-  249 (438)
                      ...++.+.++++++ +.+.    +  ++|+|||+|+..|+++++...   .+   ++|++..+.|. ....+....|.. 
T Consensus        94 ~~~~l~~~la~~~~-~~~~----v--~~~~~Gsea~~~ai~~a~~~~---~~---~~vi~~~~~yhg~~~~~~~~~g~~~  160 (429)
T 3k28_A           94 IENKLAKLVIERVP-SIEI----V--RMVNSGTEATMSALRLARGYT---GR---NKILKFIGCYHGHGDSLLIKAGSGV  160 (429)
T ss_dssp             HHHHHHHHHHHHST-TCSE----E--EEESSHHHHHHHHHHHHHHHH---TC---CEEEEEETCCCCSCGGGCSSCCTTC
T ss_pred             HHHHHHHHHHHhCC-CCCE----E--EEeCChHHHHHHHHHHHHHhh---CC---CEEEEECCCcCCCcHHHHHhcCCcc
Confidence            34456667888876 3333    5  899999999999999987531   22   57777665543 333333222322 


Q ss_pred             ------------------EEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCC
Q 013675          250 ------------------LWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGT  304 (438)
Q Consensus       250 ------------------v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i  304 (438)
                                        ++.+|.+     |+++|+++++   +++++|++...++++|.+.|    +++|.++|++||+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~  235 (429)
T 3k28_A          161 ATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGA  235 (429)
T ss_dssp             -----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC
T ss_pred             cccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC
Confidence                              2222221     8999999997   46778888887778888888    9999999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCC
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT  384 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~  384 (438)
                      ++|+|++|.++ ..     |. ....+......|.++++  |.+.++.++|+++.++ ++.+........+.+       
T Consensus       236 ~li~DEv~~g~-~~-----g~-~~~~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~-~~~~~~~~~~~~~~~-------  298 (429)
T 3k28_A          236 LLIFDEVMTGF-RV-----AY-NCGQGYYGVTPDLTCLG--KVIGGGLPVGAYGGKA-EIMRQVAPSGPIYQA-------  298 (429)
T ss_dssp             EEEEECTTTTT-TS-----ST-THHHHHHTCCCSEEEEC--GGGGTTSCCEEEEECH-HHHTTBTTTSSBCCC-------
T ss_pred             EEEEecccccc-cc-----Cc-chHHHHhCCCCceehhh--hhhcCCCCeEEEEEcH-HHHhhhccCCCcccc-------
Confidence            99999999876 21     10 00001111124666654  8765567789887764 333221100000011       


Q ss_pred             ccCCCCCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          385 VAGSRPGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       385 ~~gsr~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                        ++-.+.  ..++..++++.+.    ++..++..++.+++++.|+++
T Consensus       299 --~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~  340 (429)
T 3k28_A          299 --GTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKA  340 (429)
T ss_dssp             --CTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence              111111  1223334443322    566677777777777777653

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.49  E-value=5.8e-13  Score=134.45  Aligned_cols=162  Identities=16%  Similarity=0.154  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH-HHhhcCc-
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK-AAQYFNI-  248 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~-a~~~~Gi-  248 (438)
                      +...++.++++++++ +.+.    +  ++|+|||+|+..|++.++..    .|  +++|++....|..... +....|. 
T Consensus        93 ~~~~~la~~l~~~~~-~~~~----v--~~~~sGsea~~~al~~a~~~----~~--~~~ii~~~~~yhg~~~~~~~~~~~~  159 (429)
T 4e77_A           93 EMEVKMAQLVTDLVP-TMDM----V--RMVNSGTEATMSAIRLARGY----TG--RDKIIKFEGCYHGHADCLLVKAGSG  159 (429)
T ss_dssp             HHHHHHHHHHHHHST-TCSE----E--EEESSHHHHHHHHHHHHHHH----HC--CCEEEEETTCCCC------------
T ss_pred             HHHHHHHHHHHhhCC-CCCE----E--EEeCcHHHHHHHHHHHHHHh----hC--CCEEEEEcCccCCCChhhhhhcCCc
Confidence            445567778888887 3343    5  99999999999999987743    12  2577776666544332 2211111 


Q ss_pred             ------------------EEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675          249 ------------------KLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHG  303 (438)
Q Consensus       249 ------------------~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~  303 (438)
                                        .+..+|.     -|+++|++++++   ++++|++...++++|.+.|    +++|.++|++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~  234 (429)
T 4e77_A          160 ALTLGQPNSPGVPTDFAKHTLTCTY-----NDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFG  234 (429)
T ss_dssp             ------CCCTTSCGGGGTTEEEECT-----TCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred             ccccCCCCcCCCCCccCCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence                              1222222     189999999974   5677776666666778877    999999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEec
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRN  361 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~  361 (438)
                      +++|+|++|+++ ..     |.   .+.....+  .|+++++  |.+.++.+.|+++.++
T Consensus       235 ~lli~DEv~~g~-r~-----g~---~~~~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~~  283 (429)
T 4e77_A          235 ALLIIDEVMTGF-RV-----AL---AGAQDYYHVIPDLTCLG--KIIGGGMPVGAFGGRR  283 (429)
T ss_dssp             CEEEEEETTTBT-TT-----BT---TCHHHHTTCCCSEEEEE--GGGGTTSCCEEEEECH
T ss_pred             CEEEEeccccCc-cc-----Cc---chHHHhcCCCCCeeeec--ccccCCCCeEEEEECH
Confidence            999999999876 31     10   11111122  3676655  8865566788876653

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.49  E-value=7.7e-14  Score=141.13  Aligned_cols=215  Identities=14%  Similarity=0.137  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHH--------HHHHHHhcCCCCCeEEecCCCcCc
Q 013675          169 VARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSS--------RDYMRNKRGITRPEMIIPVSAHSA  238 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~--------~~~~~~~~G~~~~~Viv~~~~h~s  238 (438)
                      ..++++.+.+++.+..+  .++++    +  ++|+|+++++.+++.++        .     .+|   ++|+++.+.|+.
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~----i--v~t~G~~~al~~~~~~l~~~~~~~~~-----~~G---d~Vlv~~P~y~~  167 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRY----I--VFGVGVTQLIHGLVISLSPNMTATPD-----APE---SKVVAHAPFYPV  167 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCE----E--EEESHHHHHHHHHHHHHSCCTTTCTT-----SCC---EEEEECSSCCHH
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCE----E--EEeCCHHHHHHHHHHHHhhccccccC-----CCC---CEEEEeCCCccc
Confidence            56777777777765444  34444    6  99999999999999987        4     267   899999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      +...++..|++++.      +.+|+++|++++++++++|++++|+||||.+.+ +    +++  ++..+.|.++-.   +
T Consensus       168 ~~~~~~~~g~~~~~------~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~---~  231 (427)
T 2hox_A          168 FREQTKYFDKKGYV------WAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYW---P  231 (427)
T ss_dssp             HHHHHHHSCBTTEE------EEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCS---T
T ss_pred             HHHHHHHcCCeeee------ecCCHHHHHHhhcCCceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccC---C
Confidence            99999999988763      457899999999888999999999999999988 4    233  567788877521   1


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                      +       .+..... .+.+++..+++|. ++++|  +|+++.+++++.+........+..             +....+
T Consensus       232 ~-------~s~~~~~-~~~~i~~~S~SK~-~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~-------------~~~~~~  289 (427)
T 2hox_A          232 H-------YTPIKYK-ADEDILLFTMSKF-TGHSGSRFGWALIKDESVYNNLLNYMTKNTE-------------GTPRET  289 (427)
T ss_dssp             T-------TSCCCSC-BCCSEEEEEHHHH-TSCGGGCCEEEEECCHHHHHHHHHHHHHHTS-------------SCCHHH
T ss_pred             C-------CCccccC-CCceEEEEeChhc-CCCCCceEEEEEECCHHHHHHHHHHHHhcCC-------------CCCHHH
Confidence            0       1111221 4578999999998 56555  899888665554432111111100             001113


Q ss_pred             HHHHHHHHc--H-----------HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          397 AWAALMSLG--Q-----------EGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       397 ~~aal~~~g--~-----------~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.++...+.  .           +-+++..++..+..+++.+.|+++||+++
T Consensus       290 q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  341 (427)
T 2hox_A          290 QLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSY  341 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEEC
T ss_pred             HHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccc
Confidence            333333332  1           12345567788889999999998877764

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.46  E-value=4.1e-12  Score=130.10  Aligned_cols=224  Identities=12%  Similarity=0.069  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH---h-----------------cCCCCCeE
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---K-----------------RGITRPEM  229 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~-----------------~G~~~~~V  229 (438)
                      .++++++.+.++++++.+.+.    +  .+++|||||+..|+++++.+...   .                 +|..+++|
T Consensus       109 ~~l~~~la~~l~~~~~~~~~~----v--~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~i  182 (472)
T 1ohv_A          109 ENFVEKLRESLLSVAPKGMSQ----L--ITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSI  182 (472)
T ss_dssp             TTHHHHHHHTGGGGCCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEE
T ss_pred             HHHHHHHHHHHHHhCCCCcCE----E--EEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeE
Confidence            356666666666666544443    5  89999999999999999865321   0                 13224788


Q ss_pred             EecCCCcCc-HHHHHhhcCcE-----------EEEeeCCC-CC-------------ccCHHHHHHhhcc------CcEEE
Q 013675          230 IIPVSAHSA-YDKAAQYFNIK-----------LWRVPVDK-EF-------------RADVKAIKKYINR------NTVLI  277 (438)
Q Consensus       230 iv~~~~h~s-~~~a~~~~Gi~-----------v~~v~~~~-~~-------------~~d~~~Le~~I~~------~t~~v  277 (438)
                      |+....|.. ...+....|.+           +..+++.. .+             ..|+++|+++|++      +|++|
T Consensus       183 i~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v  262 (472)
T 1ohv_A          183 LSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGI  262 (472)
T ss_dssp             EEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            888766444 44443333321           11223321 00             2378999999986      88999


Q ss_pred             EEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC----ccEEEeCCCCCCC
Q 013675          278 VGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG----VTSISVDVHKYGL  349 (438)
Q Consensus       278 v~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g----vdsis~s~hK~~~  349 (438)
                      ++...++++|.+.|    +++|.++|++||+++|+|++|+|+..     .|.   .+.+...|    +|+++++  |...
T Consensus       263 ive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~-----~g~---~~~~~~~gv~~~~Di~t~s--K~~l  332 (472)
T 1ohv_A          263 IVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGS-----TGK---FWAHEHWGLDDPADVMTFS--KKMM  332 (472)
T ss_dssp             EECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTT-----TSS---SSGGGGGCCSSCCSEEEEC--GGGS
T ss_pred             EEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCC-----CCC---chhccccCCCCCCCEEEEc--cccc
Confidence            99888888998877    99999999999999999999986442     111   12222223    6888776  8721


Q ss_pred             CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh
Q 013675          350 APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL  427 (438)
Q Consensus       350 ~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L  427 (438)
                      +   .|+++ + +++..    ....+         ..++-.+.  ..+++.++++.+..   .+..++..++.+++.+.|
T Consensus       333 ~---GG~~~-~-~~~~~----~~~~~---------~~~T~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L  391 (472)
T 1ohv_A          333 T---GGFFH-K-EEFRP----NAPYR---------IFNTWLGDPSKNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGL  391 (472)
T ss_dssp             S---EEEEE-C-GGGSC----SSSSS---------SCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHH
T ss_pred             c---CCccC-c-hhhcc----ccccc---------ccCccCccHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence            2   25544 3 33311    00000         11121111  23344455554433   345677777888888887


Q ss_pred             hcC
Q 013675          428 VLF  430 (438)
Q Consensus       428 ~~~  430 (438)
                      +++
T Consensus       392 ~~l  394 (472)
T 1ohv_A          392 LDL  394 (472)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.42  E-value=3.1e-12  Score=128.82  Aligned_cols=219  Identities=16%  Similarity=0.148  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH-h----
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-Q----  244 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~-~----  244 (438)
                      .+...++.++++++++ +.+.    +  ++|+||++|+..+++++|...   .+   ++|++..+.|..+...+ .    
T Consensus        91 ~~~~~~l~~~l~~~~~-~~~~----v--~~~~~g~ea~~~al~~ar~~~---~~---~~vi~~~~~yhg~~~~~~~~~~~  157 (424)
T 2e7u_A           91 SPLEVALAKKVKRAYP-FVDL----V--RFVNSGTEATMSALRLARGYT---GR---PYIVKFRGNYHGHADGLLVEAGS  157 (424)
T ss_dssp             CHHHHHHHHHHHHHCT-TCCE----E--EEESSHHHHHHHHHHHHHHHH---CC---CEEEEETTCCCCCCGGGSEECCS
T ss_pred             CHHHHHHHHHHHHhCC-CCCE----E--EEeCCHHHHHHHHHHHHHHhh---CC---CEEEEECCCcCCCcHHHHHhcCC
Confidence            3456677778888885 3333    5  899999999999999876431   22   57877777665433221 1    


Q ss_pred             ---------hcCc------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHc
Q 013675          245 ---------YFNI------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSH  302 (438)
Q Consensus       245 ---------~~Gi------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~  302 (438)
                               ..|+      ++..+|.     .|+++|+++++   +++++|+++..++++|.+.|    +++|.++ ++|
T Consensus       158 ~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~  231 (424)
T 2e7u_A          158 GALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAY  231 (424)
T ss_dssp             SSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGG
T ss_pred             cccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc
Confidence                     1232      3455553     38999999997   45666666554455898877    9999999 999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccC--CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCcc
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS--VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~--~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      |+++++|++|+|+ ..     |.   .+...  ....|+++  .+|.+.++..+|+++.++ ++.+.....     +..+
T Consensus       232 g~~lI~DEv~~g~-~~-----g~---~~~~~~~~~~~di~s--~sK~l~~G~~~G~~~~~~-~~~~~~~~~-----~~~~  294 (424)
T 2e7u_A          232 GVLLIADEVMTGF-RL-----AF---GGATELLGLKPDLVT--LGKILGGGLPAAAYAGRR-EIMEKVAPL-----GPVY  294 (424)
T ss_dssp             TCEEEEECTTTTT-TS-----ST---THHHHHHTCCCSEEE--ECGGGGTTSSCEEEEECH-HHHTTBTTT-----SSBC
T ss_pred             CCEEEEecCcccc-cc-----ch---hHHHHHhCCCcchhh--hhhhhhCCcceEEEEEcH-HHHhhhccc-----CCcc
Confidence            9999999999876 21     10   01111  11246664  469865556688888765 333221100     0000


Q ss_pred             CCCCccCCCCCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          381 VSPTVAGSRPGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       381 ~~~~~~gsr~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                          ..++-.+.  ..+++.++++.+..  .++..++..++.+++++.|+++
T Consensus       295 ----~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~  340 (424)
T 2e7u_A          295 ----QAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEV  340 (424)
T ss_dssp             ----CCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHH
Confidence                01111111  12344445544322  2456777788888888888764

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.40  E-value=4.4e-12  Score=127.70  Aligned_cols=261  Identities=15%  Similarity=0.145  Sum_probs=157.9

Q ss_pred             HHHHHHHHHhhccCCCC-cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC
Q 013675          146 SLINEACSMFAHTNPLH-LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI  224 (438)
Q Consensus       146 ~~~~~~~~~~~~~n~~~-~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~  224 (438)
                      ..+.++.......+..+ |....|..++.+.+.+++   +|-....  +.+..+.|.|||.|+..++..+..... .+| 
T Consensus        65 ~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~~~--~~~~~~qt~ggtga~~~a~~~l~~~~~-~pg-  137 (420)
T 4h51_A           65 RVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTVEL--ENLVAVQTLSGTGAVSLGAKLLTRVFD-AET-  137 (420)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---CG--GGEEEEEEEHHHHHHHHHHHHHTTTSC-TTT-
T ss_pred             HHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCccc--cccceeeecCchHHHHHHHHHHHHhcC-CCC-
Confidence            34455544444433332 556667777776655443   3432111  113446789999999988876653211 256 


Q ss_pred             CCCeEEecCCCcCcHHHHHhhcCcE-EEEeeCC--CCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HHHH
Q 013675          225 TRPEMIIPVSAHSAYDKAAQYFNIK-LWRVPVD--KEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQEL  295 (438)
Q Consensus       225 ~~~~Viv~~~~h~s~~~a~~~~Gi~-v~~v~~~--~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~~I  295 (438)
                        ++|++++++++++...++..|.+ +...+..  +++.+|.+.+.+.+.   +++++++.+.|+||||...+   +++|
T Consensus       138 --d~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i  215 (420)
T 4h51_A          138 --TPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEI  215 (420)
T ss_dssp             --SCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred             --CEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Confidence              89999999999999999999997 4444442  367789998888774   56789999999999999865   7789


Q ss_pred             HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEecccccccc-----h
Q 013675          296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQ-----F  369 (438)
Q Consensus       296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~-----~  369 (438)
                      +++|++++++++.|.+|.++..--.+.....+ ........--+++.|+.|. +.....+|++....+......     .
T Consensus       216 ~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l  294 (420)
T 4h51_A          216 ASLMLAKHHQVFFDSAYQGYASGSLDTDAYAA-RLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVM  294 (420)
T ss_dssp             HHHHHHHTCEEEEEESCTTTTTSCHHHHTHHH-HHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHhcCceEeeehhhhhhccCCcccchHHH-HhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHH
Confidence            99999999999999999876531000000000 0000111124666788896 334456999887655332211     0


Q ss_pred             --hcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc--------HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          370 --VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       370 --~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                        .....|.            .+.  ..++..+...+.        ++.++...+++.++++.|.+.|++.
T Consensus       295 ~~~~r~~~s------------~~p--~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~  351 (420)
T 4h51_A          295 DSLIREEYT------------CPP--AHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL  351 (420)
T ss_dssp             HHHHHTTTS------------SCC--HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhcccC------------cch--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              0011111            111  112222222222        2345666777888888999988875

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.23  E-value=1.1e-10  Score=118.27  Aligned_cols=215  Identities=19%  Similarity=0.202  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhc-----
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYF-----  246 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~-----  246 (438)
                      +.++.+.+++++... +.    +  .|+++||||++.|++.+|.+.    |  +++|+....+ |.........-     
T Consensus       129 ~~~lae~l~~~~p~~-~~----v--~f~~SGsEA~e~AiklAr~~t----g--r~~ii~~~~~yHG~t~~~~~~~~~~~~  195 (454)
T 4ao9_A          129 EGRLARLICERFPQI-EQ----L--RFTNSGTEANLMALTAALHFT----G--RRKIVVFSGGYHGGVLGFGARPSPTTV  195 (454)
T ss_dssp             HHHHHHHHHHHSTTC-SE----E--EEESSHHHHHHHHHHHHHHHH----T--CCEEEEETTCBCSTTCBBSSSBCTTSC
T ss_pred             HHHHHHHHHHhCCCC-CE----E--EEeCchHHHHHHHHHHHHhcc----c--CCeEEEEeCCcCCccccccccccCccC
Confidence            455666788877532 22    5  899999999999999999753    2  3567765554 33221111110     


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      ......+|.+     |++++++.+++   ++++|++.......|.+.|    +++|.++|++||+++++|+++.|-.-+ 
T Consensus       196 ~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~-  269 (454)
T 4ao9_A          196 PFDFLVLPYN-----DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAP-  269 (454)
T ss_dssp             CSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGST-
T ss_pred             CCCcccCCCc-----hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCcc-
Confidence            1234444443     78999998864   5788888888788898877    999999999999999999998752211 


Q ss_pred             hhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch--HH
Q 013675          320 AKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL--IA  395 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~--ia  395 (438)
                               .+.....|  .|+++++  |.+.++...|.+..+++ +....   .+ -.+..+.    .++-.+..  .+
T Consensus       270 ---------~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~e-i~~~~---~~-~~~~~~h----~~T~~gnPla~A  329 (454)
T 4ao9_A          270 ---------HGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRAD-VMALF---DP-RTGPLAH----SGTFNNNVMTMA  329 (454)
T ss_dssp             ---------TCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHH-HHGGG---CT-TTCSCCC----CCTTTTCHHHHH
T ss_pred             ---------ccchhccCCCCcEEEec--cccCCCCcceeeeeHHH-HHHHH---hh-ccCCccc----cCCCCCCHHHHH
Confidence                     11112223  3888776  66555566788777754 22211   00 0111111    11222222  33


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      +..++|+.+-++   +..++..++.++|+++|++
T Consensus       330 Aala~L~~l~~~---~~~~~~~~~g~~l~~~L~~  360 (454)
T 4ao9_A          330 AGYAGLTKLFTP---EAAGALAERGEALRARLNA  360 (454)
T ss_dssp             HHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHH
Confidence            445566655433   3455566667777776654

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.21  E-value=2.4e-10  Score=116.66  Aligned_cols=235  Identities=13%  Similarity=0.070  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcC--
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFN--  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~G--  247 (438)
                      .+.++.+.++++...+-+.    +  .|+++||||+..|++.+|.+... +|. .+.+||.-..+ |-...-+...-|  
T Consensus       112 ~~~~lAe~L~~~~p~~~~~----v--~f~~sGsEA~e~AiKlAr~~~~~-~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~  184 (473)
T 4e3q_A          112 QTVMLSEKLVEVSPFDSGR----V--FYTNSGSEANDTMVKMLWFLHAA-EGKPQKRKILTRWNAYHGVTAVSASMTGKP  184 (473)
T ss_dssp             HHHHHHHHHHHHSSCSSCE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHHSCCG
T ss_pred             HHHHHHHHHHhhCCCCccE----E--EEeCchHHHHHHHHHHHHHHHHh-cCCCCcceEEEeeceECCCccccccccccc
Confidence            3445677788888665443    5  89999999999999999876554 343 34567666555 444333333222  


Q ss_pred             ------c---EEEEeeCCC------CCcc-------CHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675          248 ------I---KLWRVPVDK------EFRA-------DVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGE  297 (438)
Q Consensus       248 ------i---~v~~v~~~~------~~~~-------d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~  297 (438)
                            .   ....++...      .+..       ..+++++.|.    +++++|++.......|.+.|    +++|.+
T Consensus       185 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~  264 (473)
T 4e3q_A          185 YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILP  264 (473)
T ss_dssp             GGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHH
T ss_pred             cccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHH
Confidence                  1   344444321      1111       1345555553    35778888888887887755    899999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccc
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTE  374 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~  374 (438)
                      +|++||+++++|+++.||..     .|.   -+.+...|+  |+++++  |.+.++ ...|.++.+++-..... .....
T Consensus       265 lc~~~gilLI~DEV~tGfGR-----tG~---~fa~e~~gv~PDi~t~~--K~l~gG~~Pl~av~~~~~i~~~~~-~~~~~  333 (473)
T 4e3q_A          265 ILRKYDIPVISDEVICGFGR-----TGN---TWGCVTYDFTPDAIISS--KNLTAGFFPMGAVILGPELSKRLE-TAIEA  333 (473)
T ss_dssp             HHHHTTCCEEEECTTTSSST-----TSS---SCHHHHTTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHH-HHHHH
T ss_pred             HhcccceEEeccCccccCCc-----ccc---hhHHHhcCCCCChHHhc--ccccCCCCCcccccccHHHHHHhc-ccccc
Confidence            99999999999999988753     121   222233343  888876  654333 56788888754222110 00000


Q ss_pred             cCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                            ..+...|+..++...++.+++..+..-.-++..++..++.++|.++|+++
T Consensus       334 ------~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l  383 (473)
T 4e3q_A          334 ------IEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHI  383 (473)
T ss_dssp             ------HSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ------ccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHH
Confidence                  00111222222222244444443322222345566667778888877654

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=98.80  E-value=2.4e-12  Score=131.25  Aligned_cols=222  Identities=15%  Similarity=0.067  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHH---hh
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAA---QY  245 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~---~~  245 (438)
                      .+.+.++.+.++++++ ..+.    +  .++++||+|+..|++.+|...    |  +++||+...+|.. ...+.   ..
T Consensus       139 ~~~~~~Lae~L~~~~p-~~~~----v--~~~nSGseA~~~Aik~ar~~t----g--r~~ii~~~~~yHG~~~~~~sg~~~  205 (465)
T 2yky_A          139 TENEALFAEAVCDRFP-SIDL----V--RFTNSGTEANLMALATATAIT----G--RKTVLAFDGGYHGGLLNFASGHAP  205 (465)
Confidence            4456677778888884 2232    4  899999999999999987431    1  2678887766543 33222   12


Q ss_pred             cCc--EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchh
Q 013675          246 FNI--KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       246 ~Gi--~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      .|+  .+..+|.     -|+++|+++++   +++++|++...++++|.+.|    +++|.++|++||+++++|++++ +-
T Consensus       206 ~g~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r  279 (465)
T 2yky_A          206 TNAPYHVVLGVY-----NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SR  279 (465)
Confidence            244  2333332     37899999998   67888888776667997766    9999999999999999999998 52


Q ss_pred             hhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchH
Q 013675          317 LPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLI  394 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~i  394 (438)
                      .      |.   .+.....|  .|+++  ..|++.++..+|+++.+++ +.+.....   -.+..+...+..+..  ...
T Consensus       280 ~------g~---~~a~~~~gv~pDi~t--~sK~lg~G~piG~v~~~~~-i~~~l~~~---~~g~~~~~~T~~~np--la~  342 (465)
T 2yky_A          280 L------SG---GGAQEMLGISADLTT--LGKYIGGGMSFGAFGGRRD-LMERFDPA---RDGAFAHAGTFNNNI--LTM  342 (465)
Confidence            1      10   11122223  36654  5699655556788776643 32211000   001011111111111  112


Q ss_pred             HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          395 AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       395 a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ++..++|+.+..+   +..++..++.++++++|+++
T Consensus       343 aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~  375 (465)
T 2yky_A          343 SAGHAALTQIYTR---QAASDLSASGDRFRANLNRI  375 (465)
Confidence            3444556555333   45667777777777777654

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.16  E-value=4.2e-09  Score=106.97  Aligned_cols=169  Identities=21%  Similarity=0.197  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC----
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN----  247 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G----  247 (438)
                      +.++.+.+++++..+..+   .+  .|+++||||+..|++.+|.+.    |  +.+|+....+ |-...-+....+    
T Consensus       109 ~~~lae~L~~~~p~~~~~---~v--~f~~sGsEA~e~AlklAr~~t----~--r~~ii~~~~~yHG~t~~als~t~~~~~  177 (456)
T 4atq_A          109 YVAVTEQLNRLTPGDHAK---RT--VLFNSGAEAVENAVKVARLAT----G--RDAVVAFDHAYHGRTNLTMALTAKAMP  177 (456)
T ss_dssp             HHHHHHHHHHHSSCSSCE---EE--EEESSHHHHHHHHHHHHHHHH----C--CCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHhCCCCCCc---EE--EEeCChHHHHHHHHHHHhhhh----c--CCeEEEEecccCCccccccccccCccc
Confidence            345666788887654322   14  789999999999999998653    2  3567766655 444333332221    


Q ss_pred             ---------cEEEEeeCCC------CCccCHHHHHHhh-------c-cCcEEEEEecCCCCCccccC----HHHHHHHHH
Q 013675          248 ---------IKLWRVPVDK------EFRADVKAIKKYI-------N-RNTVLIVGSAPGFPHGIIDP----IQELGELAL  300 (438)
Q Consensus       248 ---------i~v~~v~~~~------~~~~d~~~Le~~I-------~-~~t~~vv~~~~~~~tG~idd----i~~I~~la~  300 (438)
                               -.+..+|...      ....+.+.+++.+       . +++++|++.......|.+.|    +++|.++|+
T Consensus       178 ~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~  257 (456)
T 4atq_A          178 YKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAK  257 (456)
T ss_dssp             TTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH
T ss_pred             cccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHh
Confidence                     1466676531      1112333333333       2 35788888888777787755    899999999


Q ss_pred             HcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +||+++++|+++.||..     .|.   -+.+...|+  |+++++  |.+.+....|.++.+++
T Consensus       258 ~~gillI~DEV~tG~GR-----tG~---~~a~e~~gv~PDivt~g--K~lggg~P~~av~~~~~  311 (456)
T 4atq_A          258 EKGIVFIADEVQSGFCR-----TGE---WFAVDHEGVVPDIITMA--KGIAGGLPLSAITGRAD  311 (456)
T ss_dssp             HHTCEEEEECTTTTTTT-----TSS---SSGGGGTTCCCSEEEEC--GGGGTTSSCEEEEEEHH
T ss_pred             hcCCceEecccccccCC-----ccc---cccccccCCCCchhhhh--hcccCcCCceeeEecHH
Confidence            99999999999988653     222   233444454  999887  55445556788888754

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.68  E-value=8.8e-07  Score=96.27  Aligned_cols=171  Identities=13%  Similarity=0.111  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHH-HHHHHhcCC---------CCCeEEecCCC-cCcHHHH
Q 013675          175 EVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSR-DYMRNKRGI---------TRPEMIIPVSA-HSAYDKA  242 (438)
Q Consensus       175 ~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~-~~~~~~~G~---------~~~~Viv~~~~-h~s~~~a  242 (438)
                      ++.+.++++++.+ .+.    +  .|+++||+|+..|++.++ .+.. .+|.         .+.+||....+ |.....+
T Consensus       428 ~Lae~L~~~~p~~~l~~----v--ff~~SGSeA~E~AlK~A~r~~~~-~~g~~~~~~~~~~~r~~iI~~~~syHG~T~ga  500 (831)
T 4a0g_A          428 KCAELLLDGVGKGWASR----V--YFSDNGSTAIEIALKMAFRKFCV-DHNFCEATEEEKHIVVKVIALRGSYHGDTLGA  500 (831)
T ss_dssp             HHHHHHHHTTTTTTCCE----E--EEESSHHHHHHHHHHHHHHHHHH-TTTC---------CCEEEEEETTCCCCSSHHH
T ss_pred             HHHHHHHHhCCCCCCCE----E--EECCChhHHHHHHHHHHHHHHHh-hcCCCccccccccCccEEEEecCCcccCceee
Confidence            5556788887643 222    5  899999999999999994 3332 2332         24567765554 6555555


Q ss_pred             HhhcCcE----------------------------EEEeeCCCCCc---------cC------------------HHHHH
Q 013675          243 AQYFNIK----------------------------LWRVPVDKEFR---------AD------------------VKAIK  267 (438)
Q Consensus       243 ~~~~Gi~----------------------------v~~v~~~~~~~---------~d------------------~~~Le  267 (438)
                      +..-|..                            +..++....++         -|                  .++|+
T Consensus       501 ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  580 (831)
T 4a0g_A          501 MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLS  580 (831)
T ss_dssp             HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHH
T ss_pred             eeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHH
Confidence            5443310                            11223221100         01                  26778


Q ss_pred             Hhhc--------cCcEEEEEecC-CCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCC
Q 013675          268 KYIN--------RNTVLIVGSAP-GFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV  334 (438)
Q Consensus       268 ~~I~--------~~t~~vv~~~~-~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~  334 (438)
                      +.|+        +++++|++... ....|.+.+    +++|.++|++||+++++|+++.||..     .|.   .+....
T Consensus       581 ~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGR-----tG~---~fa~e~  652 (831)
T 4a0g_A          581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWR-----LGV---ETTTEL  652 (831)
T ss_dssp             HHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTT-----TSB---SSTHHH
T ss_pred             HHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcccccc-----CCC---chhhHh
Confidence            8775        24667777765 676777754    89999999999999999999987643     111   121122


Q ss_pred             CC--ccEEEeCCCCCCCCC-CCcEEEEEecc
Q 013675          335 QG--VTSISVDVHKYGLAP-KGTSVVLYRNR  362 (438)
Q Consensus       335 ~g--vdsis~s~hK~~~~p-~g~g~l~~r~~  362 (438)
                      .|  .|+++++  |.+.+. ...|+++.+++
T Consensus       653 ~gv~PDiitls--K~L~gG~~Plgav~~~~~  681 (831)
T 4a0g_A          653 LGCKPDIACFA--KLLTGGMVPLAVTLATDA  681 (831)
T ss_dssp             HSSCCSEEEEC--GGGGTTSSCCEEEEECHH
T ss_pred             cCCCCcEEEEe--cccccCccCcEEEEECHH
Confidence            23  3787755  775443 35688887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	438
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	8e-57
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	7e-38
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	2e-37
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	3e-29
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	7e-10
d1wyub1	471	c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2	1e-06
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	8e-05
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	2e-04
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	8e-04
d2bkwa1	382	c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe	0.003
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	0.004

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score =  192 bits (487), Expect = 8e-57
 Identities = 70/336 (20%), Positives = 134/336 (39%), Gaps = 25/336 (7%)

Query: 117 KEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLIN--------EACSMFAHTNPLHLDIFQS 168
             E   DV +Q   +  +Y+ G+  +   +           +   +  + N +  + +  
Sbjct: 32  LHEMRDDVAFQ-IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQ 90

Query: 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR----GI 224
            A  +   + M A L         GQ  G  T G +E+ +L   + +   R +       
Sbjct: 91  SAAIDLRCVNMVADLWHAPA-PKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKP 149

Query: 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPG 283
           T    ++       + K A+Y++++L  +P+       D K + +  + NT+ +V +   
Sbjct: 150 TDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGV 209

Query: 284 FPHGIIDPIQ------ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV 337
              G  +  Q      +  +        +H+D   GGF+ PF      P   +DF +  V
Sbjct: 210 TYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPF----VAPDIVWDFRLPRV 265

Query: 338 TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA 397
            SIS   HK+GLAP G   V++R+ E    + V   ++ GG   +  +  SRP G +   
Sbjct: 266 KSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQ 325

Query: 398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF 433
           +   + LG+EGY +   A  +V+  +   +     +
Sbjct: 326 YYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPY 361

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  140 bits (354), Expect = 7e-38
 Identities = 48/344 (13%), Positives = 92/344 (26%), Gaps = 49/344 (14%)

Query: 102 ELPRAGLG-VGVIEKLKEEKGKD-VVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN 159
           + P  G     +   L E    D   + G C         E     +L+      F H  
Sbjct: 18  KCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGER----EGRVASALVARRHYRFIHGI 73

Query: 160 PLHLDIFQS---------VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLA 210
               DI            + +    ++     L G    A        +    T   L  
Sbjct: 74  GRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVA-----SCFVVPMATGMSLTL 128

Query: 211 VKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK---LWRVPVDKEFRADV---- 263
              +       +      +I P     +  K+      +   +  V    E R D+    
Sbjct: 129 CFLTL----RHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVE 184

Query: 264 KAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323
             I++    + + +  +   F   + D ++EL  +  ++     V+   G          
Sbjct: 185 AKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHL- 243

Query: 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP 383
                     V  + +    + K  + P G +++   N    +              +S 
Sbjct: 244 ----IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD-------------ISK 286

Query: 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
              G             L+SLG  GY +  K   E+   +   L
Sbjct: 287 MYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQL 330

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  139 bits (352), Expect = 2e-37
 Identities = 56/392 (14%), Positives = 125/392 (31%), Gaps = 43/392 (10%)

Query: 68  KLVPGVNKYIE-AEKQKVVDKMQSGVKSKREGWWTELPRAGLGV-GVIEKLKEEKGKDVV 125
           ++V  +  Y+E  E ++V   +Q G    R       P+       +++ +++     V 
Sbjct: 12  EMVDYMADYLEGIEGRQVYPDVQPG--YLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT 69

Query: 126 -WQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
            W             S    + +++ +                 +    E  ++     +
Sbjct: 70  HWHSPYFFAYFPTASS----YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKM 125

Query: 184 LGNKEKA---SGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-----------ITRPEM 229
           L   E       G+  G +    +E+ L+A+ ++R  +  +             + +   
Sbjct: 126 LQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185

Query: 230 IIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT------VLIVGSAPG 283
                AHS+ ++A     +KL  +P D +F     A+++ + R+         +V +   
Sbjct: 186 YASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGT 245

Query: 284 FPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVD 343
                 D + E+G +       LHVD    G      +            V+   S + +
Sbjct: 246 TSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEF-----RHLLNGVEFADSFNFN 300

Query: 344 VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW-----SGGLYVSPTVAGSRPGGLIAGA- 397
            HK+ L     S +  + R      F     +      G   ++       P G    + 
Sbjct: 301 PHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSL 360

Query: 398 --WAALMSLGQEGYLENTKAIMEVSESIQKGL 427
             W      G +G     +  +++S   +  +
Sbjct: 361 KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFV 392

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score =  116 bits (291), Expect = 3e-29
 Identities = 56/338 (16%), Positives = 110/338 (32%), Gaps = 40/338 (11%)

Query: 102 ELPRAGLGVGVIEK-LKEEKGKDV-VWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN 159
           ++P  G+    I+  LK     D                + ++    +  E  S F H  
Sbjct: 37  KIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSK----IHEELSSGFCHGI 92

Query: 160 PLHLDIF--QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDY 217
               ++   Q  A   + + A+T  +L +  K  G  V    T   T   +    S+   
Sbjct: 93  GRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAA-- 150

Query: 218 MRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK---LWRVPVDKEFRADVKAIKKYINR-- 272
              ++      +I P ++H +  KA  +  +    +  V         V+ I+  I +  
Sbjct: 151 ---RKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEI 207

Query: 273 ---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329
              N   ++ +   FP    D I E+ ++  ++     ++             L      
Sbjct: 208 ELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ---NNYYLEKLKKA 264

Query: 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389
           F +    V ++     K  L P G  +V   + E  K              +S +  G  
Sbjct: 265 FKY---RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE-------------ISLSYPGRA 308

Query: 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
               +     +L+S+G + YLE  K      + + + L
Sbjct: 309 SATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELL 346

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 58.0 bits (139), Expect = 7e-10
 Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 24/247 (9%)

Query: 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240
           A L+G    A   ++    TSG TES  LA+K + ++ + K+G           A     
Sbjct: 58  ADLVG----ADPREIV--FTSGATESDNLAIKGAANFYQ-KKGKHIITSKTEHKAVLDTC 110

Query: 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL 300
           +  +    ++  +   +    D+K ++  +  +T+L+         G++  I  +GE+  
Sbjct: 111 RQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCR 170

Query: 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
           + G   HVD                   P D S   V  +S   HK    PKG   +  R
Sbjct: 171 ARGIIYHVDAT-----------QSVGKLPIDLSQLKVDLMSFSGHKIY-GPKGIGALYVR 218

Query: 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
               RK +     +  GG +     +G+ P   I G       + +E      + +  + 
Sbjct: 219 ----RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVG-MGEAYRIAKEEMATEMERLRGLR 273

Query: 421 ESIQKGL 427
             +  G+
Sbjct: 274 NRLWNGI 280

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} Length = 471

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 14/288 (4%)

Query: 146 SLINEACSMFAHTNPLHLDIFQSVARFEA--EVIAMTAALLGNKEKASGGQVCGNMTSGG 203
            L  EA  +FA  +P       +        E+     AL G               + G
Sbjct: 80  KLHEEAARLFADLHPYQDPR-TAQGALRLMWELGEYLKALTGM-------DAITLEPAAG 131

Query: 204 TESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADV 263
               L  +   R Y  ++       +++   +    + A         R           
Sbjct: 132 AHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVD 191

Query: 264 KAIKKY-INRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322
               K  +  +   ++ + P         I E+  L    G  L+ D      ++ +A+ 
Sbjct: 192 LEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARP 251

Query: 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR---NREIRKHQFVAVTEWSGGL 379
                     ++    ++       G  P G    L        + + +     ++    
Sbjct: 252 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPK 311

Query: 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
            +    +       +  AWA + +LG EG  +     +  +  +++ L
Sbjct: 312 SIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELL 359

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 35/275 (12%), Positives = 71/275 (25%), Gaps = 50/275 (18%)

Query: 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226
           ++    + +       L    +              G  +  +       Y + K G  +
Sbjct: 75  RNYYDLKDKA----KELFN-YDYII-------PAHQGRGAENILFPVLLKYKQ-KEGKAK 121

Query: 227 PEMIIPVS------AHSAYDKAAQYFNIKLWRV----PVDKEFRADVKAIKKYINRNTVL 276
             + I         AH   +       +           D +   D+K +K+ I ++   
Sbjct: 122 NPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 181

Query: 277 IVGSAPGFPHGI--------IDPIQELGELALSHGTCLHVDLCLGGFVLPFAK------- 321
            + +                +  ++E+ E+A  HG  + +D         F K       
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 241

Query: 322 -KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY 380
                 +    +      ++S    K         +V  R+ E                 
Sbjct: 242 NATIKEVIFDMYKYADALTMSA---KKDPLLNIGGLVAIRDNEEIFTLARQR-------- 290

Query: 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKA 415
             P       GGL     AA++   +EG  E    
Sbjct: 291 CVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLH 325

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 22/278 (7%), Positives = 68/278 (24%), Gaps = 38/278 (13%)

Query: 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226
           +S       V      + G  +           T  G  +  + +         ++G+ R
Sbjct: 74  RSYYALAESV----KNIFG-YQYTI-------PTHQGRGAEQIYIPVLIKKREQEKGLDR 121

Query: 227 PEMIIPVSAH-------------------SAYDKAAQYFNIKLWRVPVDKEFRADVKAIK 267
            +M+   +                                       ++   R   +   
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181

Query: 268 KYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC-----LGGFVLPFAKK 322
             +      I  ++ G     +  ++ +  +A  +   + +D               A+ 
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241

Query: 323 LGYPIPPFDFSV-QGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGGLY 380
             + I        +    +++   K  + P G  + +  +     +     +     G  
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFP 301

Query: 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIME 418
               + G     L  G +  +        +   + +++
Sbjct: 302 TYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD 339

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 30/270 (11%), Positives = 59/270 (21%), Gaps = 41/270 (15%)

Query: 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227
           +    E  V      L G  +           T  G  +  L  + +      +      
Sbjct: 76  NFYHLEKTV----KELFG-FKHIV-------PTHQGRGAENLLSQLAIK--PGQYVAGNM 121

Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE---FRADVKAIKKYINRNTVLIVG----- 279
                                                D+  +   I       +      
Sbjct: 122 YFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLA 181

Query: 280 ---SAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP--------IP 328
              +  G     +  ++ + E+A ++G  +  D         F K+            I 
Sbjct: 182 VTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIV 241

Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
              FS     ++S    K          +   + E+       V  + G         G 
Sbjct: 242 HEMFSYADGCTMS---GKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEG-----MPSYGG 293

Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIME 418
             G  +      L    Q  Y+E+    + 
Sbjct: 294 LAGRDMEAMAIGLREAMQYEYIEHRVKQVR 323

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 24/208 (11%), Positives = 44/208 (21%), Gaps = 14/208 (6%)

Query: 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKS-SRDYMRNKRGITRPEMIIP 232
             V+  T A+  +   +        +   GT    +   +       NK  +        
Sbjct: 39  QRVLKNTRAVFKSAAASKSQPFV--LAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFS 96

Query: 233 VSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPI 292
                         ++       +      +       +   V +               
Sbjct: 97  DRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKA 156

Query: 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK 352
                   S  T   VD                    F+F   GV        K   AP 
Sbjct: 157 ISQAIKQTSPETFFVVDAVCSIGCE-----------EFEFDEWGVDFALTASQKAIGAPA 205

Query: 353 GTSVVLYRNREIRKHQFVAVTEWSGGLY 380
           G S+ L  +R +      +      G +
Sbjct: 206 GLSISLCSSRFMDYALNDSKNGHVHGYF 233

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234
           + I     ++GN        V G    G T+ I   V S    M         +++    
Sbjct: 107 KTIKELHEVVGNAAAKDRYIVFGV---GVTQLIHGLVISLSPNMTATPDAPESKVVAHAP 163

Query: 235 AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII 289
            +  + +  +YF+ K         +  +        N    + + ++P  P G++
Sbjct: 164 FYPVFREQTKYFDKK------GYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	438
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	100.0
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	100.0
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	100.0
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.98
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.95
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.95
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.95
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.94
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.93
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.92
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.91
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.9
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.87
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.87
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.86
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.84
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.83
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.8
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.8
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.8
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.78
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.78
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.77
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.77
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.77
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.76
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.76
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.75
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.75
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.75
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.71
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.71
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.71
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.7
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.7
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.69
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.69
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.69
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.69
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.67
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.67
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.66
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.66
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.66
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.66
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.65
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.65
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.64
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.64
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.64
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.64
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.64
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.63
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.63
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.61
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.6
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.6
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.59
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.57
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.57
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.55
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.54
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.53
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.52
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.51
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.51
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.49
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.47
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.45
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.44
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.44
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.4
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.39
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.35
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.35
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.32
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.29
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.25
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.24
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.21
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.11
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.01
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	98.99
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.86
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.85
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.76

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-48  Score=395.78  Aligned_cols=344  Identities=20%  Similarity=0.291  Sum_probs=288.6

Q ss_pred             HHHHHHHhhhhhccccccccCCCCCCCCCCCCc-HHHHHHHHHH--hCCCCCCC--CCceeeeecCCCCcchHHHHHHHH
Q 013675           77 IEAEKQKVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEE--KGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEA  151 (438)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~~~~~--~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~  151 (438)
                      +.+...+.++..+.+..........+||++|++ +++.+.+++.  .+++..++  +++     ....+     ..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~d~l~~dg~~~~n~asf~-----~t~~~-----~~~~~l   73 (450)
T d1pmma_           4 VTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFC-----QTWDD-----ENVHKL   73 (450)
T ss_dssp             HHHHHHHHHCCTTTSGGGSSCCCCSSCCCSCCCHHHHHHHHHHHGGGSCCGGGBCSCCS-----CCCCC-----HHHHHH
T ss_pred             hhHHHHhhhccchhhhhhccccccccCCccCCCHHHHHHHHHHHhccCCCccccccccc-----cCCCC-----HHHHHH
Confidence            334445555555554333344556789999999 9999999885  45654443  322     11222     245677


Q ss_pred             HHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh---cCC-CCC
Q 013675          152 CSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK---RGI-TRP  227 (438)
Q Consensus       152 ~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~---~G~-~~~  227 (438)
                      +..+++.|..+++.+|...++|.++++|+++|+|+|... ++..+|++|+|||+|+++|+.++|++...+   .|. ...
T Consensus        74 ~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~-~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~  152 (450)
T d1pmma_          74 MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPK-NGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDK  152 (450)
T ss_dssp             HHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCT-TSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSC
T ss_pred             HHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccc-cCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Confidence            778899999999999999999999999999999997532 223478999999999999999999865432   222 234


Q ss_pred             eEEecCCCcCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHH------H
Q 013675          228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA------L  300 (438)
Q Consensus       228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la------~  300 (438)
                      .++++..+|+++.|+|+++|++++.||+++ ++.+|+++|+++|+++|++|++++++|.||.+||+++|+++|      +
T Consensus       153 ~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~  232 (450)
T d1pmma_         153 PNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADT  232 (450)
T ss_dssp             CEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHH
T ss_pred             ceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHh
Confidence            577888899999999999999999999987 799999999999999999999999999999999999888875      5


Q ss_pred             HcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCcc
Q 013675          301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      ++|+|+|||||+||+.+||....    ..++++..++||+++|+||||++|+|+|++++|++......+...++|.++.+
T Consensus       233 ~~~i~lHVDAA~gG~~~p~~~~~----~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~  308 (450)
T d1pmma_         233 GIDIDMHIDAASGGFLAPFVAPD----IVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQI  308 (450)
T ss_dssp             CCCCCEEEECTTGGGTHHHHCTT----CCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEE
T ss_pred             ccCcEEEeehhhccceeeeechh----hhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCc
Confidence            68999999999999999987542    25788899999999999999999999999999999988888888889999888


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+.++.++|++..++++|++++.+|.+||+++.++..+++++|.+.|+++|++++
T Consensus       309 ~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el  363 (450)
T d1pmma_         309 GTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF  363 (450)
T ss_dssp             EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEE
T ss_pred             CCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            8889999999988889999999999999999999999999999999999998775

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.4e-47  Score=390.57  Aligned_cols=328  Identities=16%  Similarity=0.160  Sum_probs=272.7

Q ss_pred             cCCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHH
Q 013675           96 REGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARF  172 (438)
Q Consensus        96 ~~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~  172 (438)
                      +...+.++|++|.+ +++++++++. .+....|+ |++.|+++.+..    ...++.+.+....|+|...++.+|..+++
T Consensus        39 ~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~~~~~~----~~~~l~~~~~~~~n~n~~~~~~sp~~t~i  114 (476)
T d1js3a_          39 RPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASS----YPAMLADMLCGAIGCIGFSWAASPACTEL  114 (476)
T ss_dssp             GGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCC----HHHHHHHHHHHHHCCCCSSGGGCHHHHHH
T ss_pred             HHhcCcccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeCCCCCC----HHHHHHHHHHHhhcccccchhhhhhHHHH
Confidence            34556789999999 9999999987 66778888 899999877766    47888899989999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCC---CCccceeEcCChHHHHHHHHHHHHHHHHHh-----cCC------CCCeEEecCCCcCc
Q 013675          173 EAEVIAMTAALLGNKEKAS---GGQVCGNMTSGGTESILLAVKSSRDYMRNK-----RGI------TRPEMIIPVSAHSA  238 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~---~~~v~g~~t~ggt~a~~~al~a~~~~~~~~-----~G~------~~~~Viv~~~~h~s  238 (438)
                      |.++.+|+++++|+|.+..   .+..+|++|+|||+||++++.++|++...+     .|.      ++..+++++.+|+|
T Consensus       115 E~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~S  194 (476)
T d1js3a_         115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS  194 (476)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH
T ss_pred             HHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHH
Confidence            9999999999999975311   112478999999999999999999865421     222      13568999999999


Q ss_pred             HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccC------cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675          239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~  312 (438)
                      +.|++.++|+.++.||+|++++||+++|+++|+++      +.+|++++++|.+|.+||+++|+++|++||+|+||||||
T Consensus       195 i~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~  274 (476)
T d1js3a_         195 VERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAY  274 (476)
T ss_dssp             HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEeccc
Confidence            99999999999999999999999999999999763      689999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccC---CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC---------Ccc
Q 013675          313 GGFVLPFAKKLGYPIPPFDFS---VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG---------GLY  380 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~---~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g---------~~~  380 (438)
                      ||++.++.        +.+..   ..++||+++|+|||+++|+++|++++|++......+.....|..         ..+
T Consensus       275 Gg~~~~~~--------~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (476)
T d1js3a_         275 AGSAFICP--------EFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDY  346 (476)
T ss_dssp             GGGGGGST--------TTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCG
T ss_pred             chhhhhhc--------chhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccccccccc
Confidence            99988642        23333   34569999999999999999999999987655443322222211         123


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      ...++.++|.... +++|++++.+|.+||++++++..++++++++.|++.|++++.
T Consensus       347 ~~~~~~~sr~~~a-l~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~  401 (476)
T d1js3a_         347 RHWQLPLGRRFRS-LKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVC  401 (476)
T ss_dssp             GGSSSCSCCCCTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEC
T ss_pred             cccccccchhhHH-HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            3456777777554 489999999999999999999999999999999999998764

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-34  Score=292.76  Aligned_cols=298  Identities=16%  Similarity=0.107  Sum_probs=229.7

Q ss_pred             CCCCCCCc-HHHHHHHHHHh-CCCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCccc---------chhHH
Q 013675          102 ELPRAGLG-VGVIEKLKEEK-GKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDI---------FQSVA  170 (438)
Q Consensus       102 ~lP~~g~~-~~i~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~---------~~~~~  170 (438)
                      +||++|.+ +++++.++++. ....+|.+++.+..+.+..    +.+++.+.+..+..+++.+.+.         ++...
T Consensus        18 ~lP~~G~~~~~i~~~l~~~~~~d~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (445)
T d3bc8a1          18 KCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRV----ASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLN   93 (445)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCC----SCHHHHHHTTTCCSCBCC-------CCSBHHHHHHH
T ss_pred             CCCcCCCCHHHHHHHHHHHHhccCCcccCcccccccCccc----cHHHHHHHHHhhccccccCcchhhhhhhhccchHHH
Confidence            59999999 99999999873 2333444444333222222    3456666665566555444322         23467


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      ++|.++++|+++++|++...     +|++|+|||++..+++.+++..    .+..+++||+|..+|+++.+++.++|++.
T Consensus        94 ~le~~~~~~~~~l~g~~~~~-----~~~~~~~~t~~~~~~~l~a~~~----~~~~~~~vi~~~~~H~s~~~a~~~~g~~~  164 (445)
T d3bc8a1          94 KITNSLVLNVIKLAGVHSVA-----SCFVVPMATGMSLTLCFLTLRH----KRPKAKYIIWPRIDQKSCFKSMVTAGFEP  164 (445)
T ss_dssp             HHHHHHHHHHHHHHTCTTCC-----EEEEESSCHHHHHHHHHHHHHH----HCTTCCEEEEECCCCHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHhCCCccc-----CccccccchHHHHHHHHHHHHH----hCCCCCEEEEcCcccHHHHHHHHHcCCee
Confidence            89999999999999999876     7899999998777665555432    22234899999999999999999999998


Q ss_pred             EEeeC---CCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          251 WRVPV---DKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       251 ~~v~~---~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      +.|++   ++++.+|+++|+++|++    +|++|++++|++++|.++|+++|+++|++||+|+|+|+|+|++..++... 
T Consensus       165 ~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~-  243 (445)
T d3bc8a1         165 VVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHL-  243 (445)
T ss_dssp             EEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH-
T ss_pred             EEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhcccc-
Confidence            88864   56899999999999964    68999999999999999999999999999999999999999876543221 


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS  403 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~  403 (438)
                          ++.+....++|++++++||++++|.|+|+++++++..++...             ....+++.+.....+|+++..
T Consensus       244 ----~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~  306 (445)
T d3bc8a1         244 ----IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS-------------KMYPGRASASPSLDVLITLLS  306 (445)
T ss_dssp             ----HHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHH-------------HHSCSCBCSHHHHHHHHHHHH
T ss_pred             ----chhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHH-------------HHHhhcccCcchHHHHHHHHH
Confidence                134445567999999999999999999999998876654321             122345566667799999999


Q ss_pred             HcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          404 LGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       404 ~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +|.+++.+..++..++++++.+.|+++
T Consensus       307 ~g~~~~~~~~~~~~~~~~~~~~~L~~l  333 (445)
T d3bc8a1         307 LGCSGYRKLLKERKEMFVYLSTQLKKL  333 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998764

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.98  E-value=1.7e-31  Score=269.18  Aligned_cols=294  Identities=16%  Similarity=0.111  Sum_probs=220.2

Q ss_pred             CCCCCCCc-HHHHHHHHHHhCCC-CCCCCCceeeeecCCCCcchHHHHHHHHHHHh-------hccCCCCcccc--hhHH
Q 013675          102 ELPRAGLG-VGVIEKLKEEKGKD-VVWQGKCSGTVYIGGSEAEGHFSLINEACSMF-------AHTNPLHLDIF--QSVA  170 (438)
Q Consensus       102 ~lP~~g~~-~~i~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~n~~~~~~~--~~~~  170 (438)
                      +||++|++ +++.+.++++...+ .+|.+....+-+.+...    ..++.+....+       ...++++++.+  ....
T Consensus        37 ~lP~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  112 (434)
T d2z67a1          37 KIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTY----SKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMY  112 (434)
T ss_dssp             SCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSCCCCCS----CHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHhcCcccccccccccceecccc----hhHHhhcccccccccccccchhhhhhhhhhhHHHH
Confidence            59999999 99999999985533 55654433222222222    23443332111       12334555444  3457


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL  250 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v  250 (438)
                      +++.++..++++++|.+...      +.+..|+++++.+++.+.|..   .++   ++|++|...|+++.+++.+.|++.
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~------~~~~~~t~~~~~~~l~a~r~~---~~~---~~vi~s~~~H~s~~k~~~~~g~~~  180 (434)
T d2z67a1         113 ALTNKILESFFKQLGLNVHA------IATPISTGMSISLCLSAARKK---YGS---NVVIYPYASHKSPIKAVSFVGMNM  180 (434)
T ss_dssp             HHHHHHHHHHHHHTTCCCEE------EEESSCHHHHHHHHHHHHHHH---HCC---CEEEEECCCCHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHhcCCCcce------eecCcHHHHHHHHHHHHHHHh---hcC---ceEEEeccCCHHHHHHHHHhCCcc
Confidence            88999999999999998653      245566666666667766542   233   799999999999999999999998


Q ss_pred             EEeeC---CCCCccCHHHHHHhhcc-----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          251 WRVPV---DKEFRADVKAIKKYINR-----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       251 ~~v~~---~~~~~~d~~~Le~~I~~-----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      +.|++   ++++.+|+++|+++|++     ++.+|++++|++++|.++|+++|+++|++||+|+|||+|+|++...+...
T Consensus       181 ~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~  260 (434)
T d2z67a1         181 RLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEK  260 (434)
T ss_dssp             EEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred             eEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccc
Confidence            88874   44788999999999975     68899999999999999999999999999999999999998755321111


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM  402 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~  402 (438)
                            +......|+|++++++||++++|.|+|+++++++..++...             ....++........+|+++.
T Consensus       261 ------~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~a~l~  321 (434)
T d2z67a1         261 ------LKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEIS-------------LSYPGRASATPVVNTLVSLL  321 (434)
T ss_dssp             ------HHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHH-------------TTSCSCBCSHHHHHHHHHHH
T ss_pred             ------ccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHH-------------hhcccccccchHHHHHHHHH
Confidence                  11224458999999999999999999999999876654321             12234455556778999999


Q ss_pred             HHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          403 SLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .+|.+|+++..++..++++++++.|+++
T Consensus       322 ~~~~~g~~~~~~~~~~~a~~l~~~L~~l  349 (434)
T d2z67a1         322 SMGSKNYLELVKNQKNSKKLLDELLNDL  349 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999875

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.95  E-value=3.8e-27  Score=232.74  Aligned_cols=268  Identities=19%  Similarity=0.202  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      ..+.+.+.+.......+..........++.+++++.+++++|+++++    +  ++|+|+|+|+.+++.+++.    ++|
T Consensus        23 v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~----i--~~~~g~t~a~~~~~~~l~~----~~g   92 (381)
T d1elua_          23 ALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNT----I--TITDNVTTGCDIVLWGLDW----HQG   92 (381)
T ss_dssp             HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGG----E--EEESSHHHHHHHHHHHSCC----CTT
T ss_pred             HHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCccc----E--EEECChHHHhhhcchhhhh----cCC
Confidence            33455566655555566666667777888889999999999998876    6  8999999999999888642    356


Q ss_pred             CCCCeEEecCCCcCcHHH----HHhhcCcEEEEeeCCCCCc--cCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHH
Q 013675          224 ITRPEMIIPVSAHSAYDK----AAQYFNIKLWRVPVDKEFR--ADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGE  297 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~----a~~~~Gi~v~~v~~~~~~~--~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~  297 (438)
                         ++|+++...|++...    .++..|++++.+|.+.+..  .+.+.++++++++|+++++++++|+||.+.|+++|.+
T Consensus        93 ---~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~  169 (381)
T d1elua_          93 ---DEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMA  169 (381)
T ss_dssp             ---CEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHH
T ss_pred             ---ceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccchhhHHHH
Confidence               899999999987554    4455699999999875333  3467889999999999999999999999999999999


Q ss_pred             HHHHc----CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc
Q 013675          298 LALSH----GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT  373 (438)
Q Consensus       298 la~~~----~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~  373 (438)
                      +|+++    ++++|+|++++.+..           ++++...++|++++++|||+++|.|+|+++++++...... ....
T Consensus       170 l~~~~~~~~~~~~~vD~~~~~g~~-----------~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~-p~~~  237 (381)
T d1elua_         170 VCRRHQGNYPVRVLVDGAQSAGSL-----------PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEIN-PTYV  237 (381)
T ss_dssp             HHHHCCSSSCCEEEEECTTTBTTB-----------CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCC-CCSC
T ss_pred             HHhhcccccccccccccccccccc-----------cccccccccccccccccccccccchhhHHHhhHHHHHhcC-cccc
Confidence            99984    689999999865443           4777888999999999999999999999988866443221 1111


Q ss_pred             ccCCCcc------------CCCCccCCCCCchHHHHHHHHHHHcHHHH-HHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          374 EWSGGLY------------VSPTVAGSRPGGLIAGAWAALMSLGQEGY-LENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       374 ~~~g~~~------------~~~~~~gsr~~~~ia~~~aal~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      .|.....            ......|+++...++++.++++.+...|. +.+.++..++++++.++|+++|++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  313 (381)
T d1elua_         238 GWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCL  313 (381)
T ss_dssp             CTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEec
Confidence            1211000            01113355665667788888888777765 455688999999999999999998753

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=9.5e-27  Score=232.21  Aligned_cols=267  Identities=16%  Similarity=0.134  Sum_probs=204.3

Q ss_pred             HHHHHHHHHHhhccCCCC--cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc
Q 013675          145 FSLINEACSMFAHTNPLH--LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR  222 (438)
Q Consensus       145 ~~~~~~~~~~~~~~n~~~--~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~  222 (438)
                      .+.+.+.+.. ...|+..  +..+....+..+++++.+++++|+.+++   ++  ++|+|+|+|+..++.+..... ..+
T Consensus        39 ~~~~~~~~~~-~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~---~i--~~~~~~T~~~~~~~~~~~~~~-~~~  111 (405)
T d1jf9a_          39 IDAEAEFYRH-GYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE---EL--VFVRGTTEGINLVANSWGNSN-VRA  111 (405)
T ss_dssp             HHHHHHHHHH-TCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGG---GE--EEESSHHHHHHHHHHHHHHHH-CCT
T ss_pred             HHHHHHHHHh-ccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcc---cc--cccCcHHHHHHHHHhcccccc-cCC
Confidence            3444444433 2445432  2233445567778999999999976543   15  899999999999888755322 235


Q ss_pred             CCCCCeEEecCCCcCcH----HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHH
Q 013675          223 GITRPEMIIPVSAHSAY----DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGEL  298 (438)
Q Consensus       223 G~~~~~Viv~~~~h~s~----~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~l  298 (438)
                      |   ++|+++...|++.    ...++..|++++.+|+++++.+|+++++++++++|++|++++.+|.+|.+.|+++|+++
T Consensus       112 g---~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~  188 (405)
T d1jf9a_         112 G---DNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITL  188 (405)
T ss_dssp             T---CEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHH
T ss_pred             C---CEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhH
Confidence            6   8999999999994    44556679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC-
Q 013675          299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG-  377 (438)
Q Consensus       299 a~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g-  377 (438)
                      ||++|++++||++++.+.+           ++|+...++|++++++||| +||+|+|+++++++....... ....|.. 
T Consensus       189 ~~~~g~~~~vD~~q~~g~~-----------~id~~~~~~D~~~~s~hK~-~Gp~G~g~l~v~~~~~~~~~~-~~~~~~~~  255 (405)
T d1jf9a_         189 AHQHGAKVLVDGAQAVMHH-----------PVDVQALDCDFYVFSGHKL-YGPTGIGILYVKEALLQEMPP-WEGGGSMI  255 (405)
T ss_dssp             HHHTTCEEEEECTTTTTTS-----------CCCHHHHTCSEEEEEGGGT-TSCSSCEEEEECHHHHTTCCC-SSCSSSSE
T ss_pred             HHHcCCeeecccceecccc-----------ccchhhcCCceeecccccc-ccCCCceeeeechhhhcccCc-cccccccc
Confidence            9999999999999764443           4777888999999999999 699999999998654332111 1111110 


Q ss_pred             --------Ccc---CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          378 --------GLY---VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       378 --------~~~---~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                              ..+   ......|+++...++++.++++.+...|++.+.++...+++++.+.++..+.+.
T Consensus       256 ~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~  323 (405)
T d1jf9a_         256 ATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLT  323 (405)
T ss_dssp             EECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred             CccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCccc
Confidence                    000   001124677777788999999988888999999999999999999999886653

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.2e-26  Score=226.96  Aligned_cols=242  Identities=21%  Similarity=0.252  Sum_probs=189.9

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh--
Q 013675          167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ--  244 (438)
Q Consensus       167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~--  244 (438)
                      ....++.+++++.+++++|+++++    |  ++|+|+|+++..++.++..... ++|   ++|+++...|++....++  
T Consensus        44 ~~~~~~~~~~R~~iA~~lg~~~~~----I--~~~~~~t~~l~~~~~~~~~~~~-~~g---d~Vv~~~~~~~s~~~~~~~~  113 (391)
T d1p3wa_          44 WQAEEAVDIARNQIADLVGADPRE----I--VFTSGATESDNLAIKGAANFYQ-KKG---KHIITSKTEHKAVLDTCRQL  113 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGG----E--EEESSHHHHHHHHHHHHHHHHG-GGC---CEEEEETTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCc----E--EEECCHHHHHHHHHhhhhhhhc-CCC---CEEEEeccccchHHHHHHHH
Confidence            345667778899999999999886    7  9999999999999988764322 467   899999999999765544  


Q ss_pred             -hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          245 -YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       245 -~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                       ..|++++.+|.++++.+|+++++++|+++|++|++++++|+||.+.|+++|+++||++|+++++|++++.+..      
T Consensus       114 ~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~------  187 (391)
T d1p3wa_         114 EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL------  187 (391)
T ss_dssp             HHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTB------
T ss_pred             HHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCc------
Confidence             4599999999999999999999999999999999999999999999999999999999999999999764443      


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS  403 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~  403 (438)
                           ++|+...++|++++++||| ++|.|+|+++++++......    +.+.|+........|+......+++..++..
T Consensus       188 -----~~d~~~~~~D~~~~s~~k~-~g~~g~g~~~~~~~~~~~~~----~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~  257 (391)
T d1p3wa_         188 -----PIDLSQLKVDLMSFSGHKI-YGPKGIGALYVRRKPRVRIE----AQMHGGGHERGMRSGTLPVHQIVGMGEAYRI  257 (391)
T ss_dssp             -----CCCTTTSCCSEEEEESTTT-TSCSSCEEEEECBTTBCCCC----CSSCSSCTTTTTSCSCCCHHHHHHHHHHHHH
T ss_pred             -----cccchhccccccccccccc-cCCCceEEEEEecchhcccC----CcccCCccccCcccCcchhhhhhhhhhhhhH
Confidence                 5788888999999999999 79999999999876443321    2233433333333444444444444444433


Q ss_pred             HcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          404 LGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       404 ~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      . .+...+..++..+++.++.+.|.++++..+
T Consensus       258 ~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  288 (391)
T d1p3wa_         258 A-KEEMATEMERLRGLRNRLWNGIKDIEEVYL  288 (391)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHTTTTSTTEEE
T ss_pred             H-HHHhhHHHHHHHHHHHHHHHHHHhhcCeee
Confidence            3 344566677888899999999988876543

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.94  E-value=1.3e-25  Score=224.13  Aligned_cols=267  Identities=18%  Similarity=0.115  Sum_probs=204.4

Q ss_pred             HHHHHHHHHhhccCCCC--cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          146 SLINEACSMFAHTNPLH--LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       146 ~~~~~~~~~~~~~n~~~--~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      +.+.+.+... ..|+..  +..+....++.+++++.+++++|+++++     ..++|+++|+++.+++.+.... ..++|
T Consensus        40 ~~~~~~~~~~-~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~-----~i~~~~~tt~~~n~~~~~~~~~-~~~~g  112 (408)
T d1t3ia_          40 EKLMHYYEND-NANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR-----EIVYTRNATEAINLVAYSWGMN-NLKAG  112 (408)
T ss_dssp             HHHHHHHHHT-CCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGG-----GEEEESSHHHHHHHHHHHTHHH-HCCTT
T ss_pred             HHHHHHHHhc-CCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcc-----cEEeecchHHHHHHHHhhcccc-ccCCC
Confidence            3444444432 344432  3344556677788999999999998655     3388999999999988775432 22356


Q ss_pred             CCCCeEEecCCCcCcHH----HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHH
Q 013675          224 ITRPEMIIPVSAHSAYD----KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA  299 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~----~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la  299 (438)
                         ++|+++...|++..    ..++..|++++.+|.+.++..|.++++++++++|++|++++.++.+|.+.|+++|+++|
T Consensus       113 ---~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~  189 (408)
T d1t3ia_         113 ---DEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLA  189 (408)
T ss_dssp             ---CEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHH
T ss_pred             ---CEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhh
Confidence               89999999999854    44555699999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc
Q 013675          300 LSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL  379 (438)
Q Consensus       300 ~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~  379 (438)
                      +++|+++|||++++.+.+           ++|+...++|++++++||| ++|+|+|+++++++...... .....|....
T Consensus       190 ~~~g~~~ivDa~q~~g~~-----------~id~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~~~-p~~~g~~~~~  256 (408)
T d1t3ia_         190 HQAGAKVLVDACQSAPHY-----------PLDVQLIDCDWLVASGHKM-CAPTGIGFLYGKEEILEAMP-PFFGGGEMIA  256 (408)
T ss_dssp             HHTTCEEEEECTTTTTTS-----------CCCHHHHTCSEEEEEGGGT-TSCTTCEEEEECHHHHHHSC-CCSCSTTSEE
T ss_pred             hccCceeeeccceecccc-----------cccccccCCceEEeccccc-cCCCCccccccchhhhhcCC-ceecCCcccc
Confidence            999999999999754433           5788888999999999999 79999999999866432211 0101111000


Q ss_pred             --------c---CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          380 --------Y---VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       380 --------~---~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                              +   ......|+++...++++-.+++.+...|.+++.++...+++++.+.++++|++++
T Consensus       257 ~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~  323 (408)
T d1t3ia_         257 EVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRL  323 (408)
T ss_dssp             EECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             cccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccc
Confidence                    0   0011246777777888999999888889999999999999999999999887754

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=2.6e-25  Score=217.49  Aligned_cols=227  Identities=14%  Similarity=0.131  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW  251 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~  251 (438)
                      +.+.+.+.+|+++|.+.      +  ++|+|||+|+.+++.++.     ++|   |+||++.++|++...+++..|++++
T Consensus        48 l~~~~~~~~A~~~g~e~------~--~~t~g~t~a~~~~~~al~-----~~g---d~Vi~~~~~h~s~~~~~~~~g~~v~  111 (364)
T d2e7ja1          48 IHDFIHNQLPKFLGCDV------A--RVTNGAREAKFAVMHSLA-----KKD---AWVVMDENCHYSSYVAAERAGLNIA  111 (364)
T ss_dssp             HHHHHHTHHHHHTTSSE------E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHhCcCE------E--EEECcHHHHHHHHHHHHh-----CCC---cEEEeecccccccchHHHhccceEE
Confidence            34456677999999863      3  789999999999999886     377   9999999999999999999999999


Q ss_pred             EeeCCC--CCccCHHHHHHhhccC-----cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          252 RVPVDK--EFRADVKAIKKYINRN-----TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       252 ~v~~~~--~~~~d~~~Le~~I~~~-----t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      .+|+++  ++.+|+++++++|+++     +++|++++++|++|.+.|+++|+++|++||+++|+|++|+.+.+       
T Consensus       112 ~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~-------  184 (364)
T d2e7ja1         112 LVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-------  184 (364)
T ss_dssp             EECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTB-------
T ss_pred             EeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhh-------
Confidence            999864  7889999999999653     56899999999999999999999999999999999999875544       


Q ss_pred             CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH
Q 013675          325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL  404 (438)
Q Consensus       325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~  404 (438)
                          +.+....|+|++++|+||++.+|.++|+++.+++ ...........+....  .....++..+..+.++.+++...
T Consensus       185 ----~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~  257 (364)
T d2e7ja1         185 ----PVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEKYKNKE--VELLGCTARGATIITLMASFPHV  257 (364)
T ss_dssp             ----CCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSSCTTSB--GGGTTCCCCSHHHHHHHHHHHHH
T ss_pred             ----hhcccccccceeeeccccccCCCCCEEEEEECHH-HHHHHHhhccccCccc--ccccccccchhHHHHHHHHHHHH
Confidence                2455566899999999999777777888777654 3322211111111110  01112233344444444555433


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          405 GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       405 g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                       .+. .+..++..+.++++.++|.++
T Consensus       258 -~~~-~~~~~~~~~~~~~~~~~l~~~  281 (364)
T d2e7ja1         258 -RER-IKRWDEEVEKARRFAAEMEKL  281 (364)
T ss_dssp             -HHH-GGGHHHHHHHHHHHHHHHHHT
T ss_pred             -HHH-HHHHHHHHHHHHHHHHHHHHc
Confidence             122 223344456788888888876

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.3e-23  Score=208.45  Aligned_cols=335  Identities=14%  Similarity=0.116  Sum_probs=229.8

Q ss_pred             hcCcch----hhHHHHHHHHhhhhhccccccccCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCC-CCceeeeecCCCCc
Q 013675           68 KLVPGV----NKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEA  141 (438)
Q Consensus        68 ~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~  141 (438)
                      +++|..    ++|++....+.+++++.+++++-.....+||+ +.| .|+++++.++.+++..-. +++.++.|....++
T Consensus         2 ~y~p~s~~d~~~mL~~iG~~s~~dl~~~IP~~~~~~~~~lp~-~~sE~e~~r~~~~ls~kN~~~~~~fig~G~~~~~~p~   80 (437)
T d1wyua1           2 DYTPHTEEEIREMLRRVGAASLEDLFAHLPKEILSPPIDLPE-PLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPP   80 (437)
T ss_dssp             CCCCCCHHHHHHHHHHHTCSSTGGGGTTSCGGGSSCCCCCCC-CCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCH
T ss_pred             CCCCcCHHHHHHHHHHcCCCCHHHHHHhccHHHhcCCCCCCC-CCCHHHHHHHHHHHHhCCCCcCccccCcccCCceeCH
Confidence            455544    45566666677788888887654455677885 468 999999999966654433 66666666666553


Q ss_pred             chHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh
Q 013675          142 EGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK  221 (438)
Q Consensus       142 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~  221 (438)
                       .. +.+...-..+...+|++++.++|..++..++++|++++.|++..+       .-...|..|...+++.++...   
T Consensus        81 -~i-~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd~~n-------~s~~~ga~a~~~~~~~~~~~~---  148 (437)
T d1wyua1          81 -VV-QALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIAN-------ASMYDGATALAEGVLLALRET---  148 (437)
T ss_dssp             -HH-HHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEEC-------SCBSSHHHHHHHHHHHHHHHH---
T ss_pred             -HH-HHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCCccc-------cCchHHHHHHHHHHHHHHhhh---
Confidence             22 333333344566789999999999999999999999999999765       455566666677777666432   


Q ss_pred             cCCCCCeEEecCCCcCcHHH----HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHH
Q 013675          222 RGITRPEMIIPVSAHSAYDK----AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGE  297 (438)
Q Consensus       222 ~G~~~~~Viv~~~~h~s~~~----a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~  297 (438)
                      +   +.+++++...|++...    .++..|++++.+|.++.+ .+.++    +++++++|++++||+ .|.++++++|++
T Consensus       149 ~---~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~-~~~~~----~~~~~Aavmi~~Pnt-~G~~ed~~~i~~  219 (437)
T d1wyua1         149 G---RMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR-TPLPE----VGEEVGAVVVQNPNF-LGALEDLGPFAE  219 (437)
T ss_dssp             T---CCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB-CCCCC----CCTTEEEEEEESSCT-TSBCCCHHHHHH
T ss_pred             c---ccccccccccChHHhhhhhhhcccceeeEEeeeccccc-chhhh----hccceeEEEEccccc-cccccchHHHHH
Confidence            1   2578999999987554    345669999999987533 33322    678999999999988 899999999999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccchhc--
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQFVA--  371 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~~~~--  371 (438)
                      ++|+.|..+++|+..-+...           --.....|+|++..+.|+++    +|+++.|++.++++-.+...-+.  
T Consensus       220 ~~h~~G~l~~~~ad~~al~~-----------l~~Pg~~GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg  288 (437)
T d1wyua1         220 AAHGAGALFVAVADPLSLGV-----------LKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVS  288 (437)
T ss_dssp             HHHHTTCEEEEECCTTGGGT-----------BCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEE
T ss_pred             HhhhccceEEeeechhhhhc-----------cccccccccceEeeccceeccccCCCcCccccccccchhhccccccccc
Confidence            99999999888877422111           11235568999999966653    55566799999876443321110  


Q ss_pred             -ccccCCCcc-----CCCCc------c----CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          372 -VTEWSGGLY-----VSPTV------A----GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       372 -~~~~~g~~~-----~~~~~------~----gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                       ..+-.|...     .++..      .    ++-........|+.+..+|.+|++++.+++..+|+|+++.|.+++|+++
T Consensus       289 ~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~  368 (437)
T d1wyua1         289 ETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRP  368 (437)
T ss_dssp             EEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEE
T ss_pred             cccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeec
Confidence             111111110     00000      0    1111112234455666799999999999999999999999999988875

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=4.8e-23  Score=202.71  Aligned_cols=237  Identities=22%  Similarity=0.229  Sum_probs=176.8

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---H
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---A  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---a  242 (438)
                      +....++.+++++.+++++|+++++    +  ++++|+|+++..++.+...... .+|   +.++++...|++...   .
T Consensus        39 ~~~~~~~~~~aR~~ia~l~~~~~~~----i--~~~~~~T~~l~~~~~~~~~~~~-~~g---~~v~~~~~~~~~~~~~~~~  108 (376)
T d1eg5a_          39 GIEANLHMEKAREKVAKVLGVSPSE----I--FFTSCATESINWILKTVAETFE-KRK---RTIITTPIEHKAVLETMKY  108 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCGGG----E--EEESCHHHHHHHHHHHHHHHTT-TTC---CEEEECTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCc----E--EEECCHHHHHHhhhhccccccc-ccC---cccccccccchhhHHHHHH
Confidence            4445666778899999999999886    7  9999999999998887643211 234   677777777777554   4


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~  320 (438)
                      ++..|++++.||+++++++|+++++++|+++|++|++++++++||.+.|++++.++++.+  ++.++||++++.+..   
T Consensus       109 ~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~---  185 (376)
T d1eg5a_         109 LSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI---  185 (376)
T ss_dssp             HHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS---
T ss_pred             HHhcCCEEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccc---
Confidence            455599999999999999999999999999999999999999999999999999998665  899999999754433   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA  400 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa  400 (438)
                              ++++...++|++++++||| ++|+|.|+++++++...      .+.+.++........|..+.........+
T Consensus       186 --------~~d~~~~~~D~~~~s~~K~-~gp~G~~~l~~~~~~~~------~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  250 (376)
T d1eg5a_         186 --------PFSLEKLEVDYASFSAHKF-HGPKGVGITYIRKGVPI------RPLIHGGGQERGLRSGTQNVPGIVGAARA  250 (376)
T ss_dssp             --------CCCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTSCC------CCSBCSSCTTTTTBCSCCCHHHHHHHHHH
T ss_pred             --------cccccccCccceeccccee-ecCCCceeEEeccCccc------CCcccCCCCcccccCCcccchhhhhHHHH
Confidence                    5788888999999999999 79999999988765321      12233333333333444443333333333


Q ss_pred             HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675          401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFP  431 (438)
Q Consensus       401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~  431 (438)
                      ... .................++.+.|....
T Consensus       251 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~  280 (376)
T d1eg5a_         251 MEI-AVEELSEAAKHMEKLRSKLVSGLMNLG  280 (376)
T ss_dssp             HHH-HHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhc-cccchhhhhhhhhhhhhhhcccccccc
Confidence            322 234455666667777888888887653

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.9e-21  Score=195.23  Aligned_cols=329  Identities=18%  Similarity=0.148  Sum_probs=222.7

Q ss_pred             Hhhhhhccccccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCC--CCceeeeecCCCCcchHHHHHHHHHHHhhcc
Q 013675           83 KVVDKMQSGVKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEACSMFAHT  158 (438)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (438)
                      +.+++++..++++ +......||+  +| .|++++++++..++....  -.+.|+.|++..+ . ..+.+.   ..+...
T Consensus        20 ~si~el~~~IP~~~~~~~~l~LP~--~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~hy~P-~-v~~~~~---~~~TaY   92 (471)
T d1wyub1          20 KAVPKAEDLIPKEHLREVPPRLPE--VDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNP-K-LHEEAA---RLFADL   92 (471)
T ss_dssp             SSCCCHHHHSCGGGBCSSCCCCCC--CCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCC-H-HHHHHH---HTTSSC
T ss_pred             CcchhhhhhCCHHHHcCCCCCCCC--CCHHHHHHHHHHHHhCCCCccccccCCccccCccCc-c-hhhhHH---HHHhcc
Confidence            4567777777765 4566788995  79 999999999977665443  3344655665544 2 233333   346788


Q ss_pred             CCCCc-ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH-hcCCCCCeEEecCCCc
Q 013675          159 NPLHL-DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSAH  236 (438)
Q Consensus       159 n~~~~-~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~-~~G~~~~~Viv~~~~h  236 (438)
                      +|++| +.++|..++..|.+.|+++|+|+|..+       .-...|..|...|+++++...++ ++......++++...|
T Consensus        93 TPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaN-------aS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~  165 (471)
T d1wyub1          93 HPYQDPRTAQGALRLMWELGEYLKALTGMDAIT-------LEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAH  165 (471)
T ss_dssp             CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccc-------cccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccc
Confidence            99996 999999999999999999999999765       34444444455555444433322 2222233455666667


Q ss_pred             CcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675          237 SAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV  316 (438)
Q Consensus       237 ~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~  316 (438)
                      ..........+..++.++.+..+..|.+.++.+.++++.++++++|++..+..++++++++++|+.+..+++|.+.-...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~  245 (471)
T d1wyub1         166 GSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAI  245 (471)
T ss_dssp             THHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGT
T ss_pred             cceeeeeecccceeecccccccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhh
Confidence            77777777888999999988889999999999999999999999998854444568999999999999999997742221


Q ss_pred             hhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-----CCCCCcEEEEEecccccccchhcccccCCCc--cCCCCccCCC
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-----LAPKGTSVVLYRNREIRKHQFVAVTEWSGGL--YVSPTVAGSR  389 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-----~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~--~~~~~~~gsr  389 (438)
                      .      +    .......|.|.++++.|+.+     +|+++.|++.++++-.++..-.....-..+.  ..+....=+|
T Consensus       246 ~------~----l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrR  315 (471)
T d1wyub1         246 M------G----WARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGR  315 (471)
T ss_dssp             T------T----TCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCC
T ss_pred             h------h----ccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccc
Confidence            1      1    11223446788888888853     5667889988887655543222111000000  0111111122


Q ss_pred             C------CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675          390 P------GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP  436 (438)
Q Consensus       390 ~------~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  436 (438)
                      .      +.....++..+..+|.+|++++.+.+.++|+|++++|+. +|+++.
T Consensus       316 e~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~  367 (471)
T d1wyub1         316 VRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVP  367 (471)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCS
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceec
Confidence            1      111223333445599999999999999999999999976 688763

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-21  Score=192.43  Aligned_cols=242  Identities=13%  Similarity=0.133  Sum_probs=184.8

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH--HH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD--KA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~--~a  242 (438)
                      .++.+.++.+++++.+++++|.+.+.     .-++|.|||+++.+++..+..     +|   +++++....|.+..  ..
T Consensus        46 Rs~~f~~i~~ea~~~l~~llg~~~~~-----~ii~~gsgT~a~~~~i~~l~~-----~~---~~~~~~~~~~~~~~~~~~  112 (388)
T d1h0ca_          46 MSKDMYQIMDEIKEGIQYVFQTRNPL-----TLVISGSGHCALEAALVNVLE-----PG---DSFLVGANGIWGQRAVDI  112 (388)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSE-----EEEESSCHHHHHHHHHHHHCC-----SS---CCEEECBSSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCc-----EEEEcCcHHHHHHHHHHHhhc-----cC---Cceeeecccceeeeeccc
Confidence            57888999999999999999998664     238899999999999998763     56   78988888887743  34


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      +...+..+..++.+.....|.+++++.+. .+++++++++.+|.+|.+.|+++|+++|+++|+++|||++++.+..    
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~----  188 (388)
T d1h0ca_         113 GERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGT----  188 (388)
T ss_dssp             HHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTS----
T ss_pred             cccccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccc----
Confidence            45567777777777778889888877665 5899999999999999999999999999999999999999754333    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc------------cCCCccCCCCccCCC
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE------------WSGGLYVSPTVAGSR  389 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~------------~~g~~~~~~~~~gsr  389 (438)
                             ++|+...++|++++++|||+++|.|+|+++++++............            +...........++.
T Consensus       189 -------~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  261 (388)
T d1h0ca_         189 -------PLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTI  261 (388)
T ss_dssp             -------CCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCC
T ss_pred             -------cccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccc
Confidence                   5788889999999999999999999999887754332211110000            000001111223334


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +...++++.+++..+...|++.+.++..++++++++.+++.
T Consensus       262 ~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~  302 (388)
T d1h0ca_         262 PVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL  302 (388)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc
Confidence            44456777888888888889999999999999999999875

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.87  E-value=8.3e-22  Score=195.37  Aligned_cols=247  Identities=13%  Similarity=0.129  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHH-HHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDY-MRNKRGITRPEMIIPVSAHSAYDKAAQYFN  247 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~-~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G  247 (438)
                      ..++.+++++.+++++|+++++    +  ++|+++|+++..++.+.... ....+|   +++++++..|++........+
T Consensus        68 ~~~~~e~~R~~iA~llga~~~e----i--~~~~~~T~~~~~~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~~~~~~~  138 (404)
T d1qz9a_          68 WRDLSERLGNRLATLIGARDGE----V--VVTDTTSINLFKVLSAALRVQATRSPE---RRVIVTETSNFPTDLYIAEGL  138 (404)
T ss_dssp             GGGHHHHHHHHHHTTTTCCTTS----E--EECSCHHHHHHHHHHHHHHHHHHHSTT---CCEEEEETTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCc----E--EEecCchHHHHHHhhhhhhhhcccCCC---cEEEEeccccchHHHHHHhhh
Confidence            3466778999999999999987    7  99999999999877765432 222345   678888888888766665555


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI  327 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~  327 (438)
                      .++..++.+.++..++++++++|+++|++|++++.+|.||.+.|+++|+++|+++|+.+|||++++.+..          
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~----------  208 (404)
T d1qz9a_         139 ADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV----------  208 (404)
T ss_dssp             HHHHCSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS----------
T ss_pred             heeeeeceeccccccchhHHHhcCCCceEEEEecccccccceecHHHHhccccccccceeEEeecccccc----------
Confidence            6655566555677899999999999999999999999999999999999999999999999999764433          


Q ss_pred             CCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc--------c-CCC----CccCCCCCchH
Q 013675          328 PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL--------Y-VSP----TVAGSRPGGLI  394 (438)
Q Consensus       328 p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~--------~-~~~----~~~gsr~~~~i  394 (438)
                       +++....++|++++++|||+++|+|.+.+++.++............|.+..        + ...    ...++......
T Consensus       209 -~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (404)
T d1qz9a_         209 -PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSL  287 (404)
T ss_dssp             -CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHH
T ss_pred             -ccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhH
Confidence             477778899999999999988877754445554444322111111111100        0 000    11122222233


Q ss_pred             HHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          395 AGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       395 a~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +....++..+   |.+..++...........+.+.+...+++++
T Consensus       288 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i  331 (404)
T d1qz9a_         288 AMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTL  331 (404)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEE
Confidence            4444555544   4444555555555555556666667777765

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4.3e-21  Score=188.90  Aligned_cols=247  Identities=14%  Similarity=0.079  Sum_probs=186.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCC----CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--
Q 013675          165 IFQSVARFEAEVIAMTAALLGNK----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--  238 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~----~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--  238 (438)
                      .++.+.++..++++.+.++++..    ...    +  ++|+|||+++.+++..+...  .++|   +++++....|++  
T Consensus        30 r~~~f~~~~~~~~~~~r~~~~~~~~~~~~~----i--~~t~sgT~a~~~~~~~l~~~--~~~g---d~vlv~~~~~~~~~   98 (382)
T d2bkwa1          30 TSPEFVSIFQRVLKNTRAVFKSAAASKSQP----F--VLAGSGTLGWDIFASNFILS--KAPN---KNVLVVSTGTFSDR   98 (382)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTCCGGGTCEE----E--EEESCTTHHHHHHHHHHSCT--TCSC---CEEEEECSSHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhcCCCCeE----E--EEeCcHHHHHHHHHHHHHHh--cCCC---CceEEEEechhhhh
Confidence            35677788888899999998852    232    4  89999999999999987421  1256   899999888877  


Q ss_pred             HHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcC--CeEEEeccccc
Q 013675          239 YDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLGG  314 (438)
Q Consensus       239 ~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~--i~lhVD~a~gg  314 (438)
                      +...++..|..+..+...+ ....+.+.+++++. .+++++++++.++.+|...|+++++++|++++  +++|||++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~  178 (382)
T d2bkwa1          99 FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSI  178 (382)
T ss_dssp             HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTT
T ss_pred             hhhhccccccccccccccCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeeccccc
Confidence            4456677788887776544 55678888888775 46889999999999999999999999998775  89999999754


Q ss_pred             hhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCcc--------------
Q 013675          315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY--------------  380 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~--------------  380 (438)
                      +..           ++|+...|+|++++++|||+++|+|+|+++++++.+.+........+....+              
T Consensus       179 g~~-----------pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (382)
T d2bkwa1         179 GCE-----------EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYE  247 (382)
T ss_dssp             TTS-----------CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHH
T ss_pred             ccc-----------cccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhccc
Confidence            443           5889999999999999999889999999999876433221111000000000              


Q ss_pred             -CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          381 -VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       381 -~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                       ......++.+...++++..+++.+..+|.+.+.++..++++++++.+.+.+++
T Consensus       248 ~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~  301 (382)
T d2bkwa1         248 AGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQL  301 (382)
T ss_dssp             TTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccc
Confidence             11123345555668889999999989999999999999999999998875443

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=3.4e-20  Score=180.68  Aligned_cols=241  Identities=15%  Similarity=0.088  Sum_probs=168.8

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCc-HHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSA-YDKAA  243 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s-~~~a~  243 (438)
                      ++...++.+++++.+++++|++++.    ...++|+|||+++.+++.++..     ++   +.+++.... +.. +...+
T Consensus        28 ~~~~~~~~~~~r~~l~~l~~~~~~~----~~i~~t~s~T~~~~~~~~~l~~-----~~---~~~~~~~~~~~~~~~~~~~   95 (361)
T d1m32a_          28 DDYNIGVVEQIRQQLTALATASEGY----TSVLLQGSGSYAVEAVLGSALG-----PQ---DKVLIVSNGAYGARMVEMA   95 (361)
T ss_dssp             HHHHTTTHHHHHHHHHHHHCSSSSE----EEEEEESCHHHHHHHHHHHSCC-----TT---CCEEEEESSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCC----EEEEECCCHHHHHHHHHHHhhh-----hc---cccceeeehhhhhhHHHHh
Confidence            4556677789999999999998764    2347889999999998887642     33   445444443 333 34445


Q ss_pred             hhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          244 QYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       244 ~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      ...+.+...+....  ....+.+.....++++++++.+++.+|.||.+.|+++|+++|+++|+++++|++++.+..    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~----  171 (361)
T d1m32a_          96 GLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI----  171 (361)
T ss_dssp             HHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS----
T ss_pred             hhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcc----
Confidence            55566666665544  344555666666778999999999999999999999999999999999999999764433    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc--------cCCCCccCCCCCch
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL--------YVSPTVAGSRPGGL  393 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~--------~~~~~~~gsr~~~~  393 (438)
                             ++|....++|++++++|||+++|+|.|+++++++...+.... ...|....        .......++.+...
T Consensus       172 -------~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~  243 (361)
T d1m32a_         172 -------PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGH-SRSLSLDLYAQWRCMEDNHGKWRFTSPTHT  243 (361)
T ss_dssp             -------CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTC-CSCSTTCHHHHHHHHHHTTTCCSSCCCHHH
T ss_pred             -------cccccccccceEEeeecccccCCCCceEEEechhhhhhhccc-cccccccchhhhccccccccccCCCCCchh
Confidence                   588889999999999999999999999999986544332211 11111110        01111223334444


Q ss_pred             HHHHHHHHHHHcHHHH-HHHHHHHHHHHHHHHHHhhcC
Q 013675          394 IAGAWAALMSLGQEGY-LENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       394 ia~~~aal~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +.+...++..+..+|. ....++....++.+.+.++..
T Consensus       244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (361)
T d1m32a_         244 VLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL  281 (361)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc
Confidence            5566667766666654 455567778888998888775

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.83  E-value=2.3e-19  Score=177.10  Aligned_cols=255  Identities=15%  Similarity=0.129  Sum_probs=179.7

Q ss_pred             HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE
Q 013675          150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM  229 (438)
Q Consensus       150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V  229 (438)
                      +++...+......|...++..++.+.+.+++.+..|.+...  .++  ++|+|+++++.++++++.+     +|   |+|
T Consensus        50 ~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~--~~i--~it~G~~~al~~~~~~~~~-----~g---d~V  117 (388)
T d1j32a_          50 EAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA--DNI--LVTNGGKQSIFNLMLAMIE-----PG---DEV  117 (388)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--GGE--EEESHHHHHHHHHHHHHCC-----TT---CEE
T ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCC--ceE--EEcCCHHHHHHHHHHHHhC-----CC---CEE
Confidence            34433333333446566777788888889998888765322  126  8999999999999988763     77   999


Q ss_pred             EecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCC
Q 013675          230 IIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGT  304 (438)
Q Consensus       230 iv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i  304 (438)
                      +++.+.|+.+...++..|.+++.++.+.  ++.+|+++++++++++++++++++|+||||.+.+   +++|.++|+++|+
T Consensus       118 lv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~  197 (388)
T d1j32a_         118 IIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGL  197 (388)
T ss_dssp             EEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCe
Confidence            9999999999999999999999999864  6789999999999999999999999999999977   6788888999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCccCCC---CccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCcc
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ---GVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~---gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      ++++|.+|+.+...   ...  .+++.....   .-.++..+++|.+. .+..+|+++.. +++.+.........     
T Consensus       198 ~iI~De~Y~~~~~~---~~~--~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~-~~~~~~~~~~~~~~-----  266 (388)
T d1j32a_         198 WVLSDEIYEKILYD---DAQ--HLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGP-VPLVKAATKIQGHS-----  266 (388)
T ss_dssp             EEEEECTTTTCBCT---TCC--CCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECC-HHHHHHHHHHHHTT-----
T ss_pred             EEEchhhhhccccc---CCC--CCCHHHhCcccccceeEecCChhhhhcchhHeEEEEEC-HHHHHHHHHhhhhc-----
Confidence            99999999765431   100  111111111   12567788899843 33558997654 33332211111000     


Q ss_pred             CCCCccCCCCCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          381 VSPTVAGSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                            .....  ..+++++...+  +.+.+++..+...+..+.+.+.|++++++++
T Consensus       267 ------~~~~~--~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  315 (388)
T d1j32a_         267 ------TSNVC--TFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLEC  315 (388)
T ss_dssp             ------TCSCC--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBC
T ss_pred             ------ccccc--HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEe
Confidence                  00111  11333333333  5567888888999999999999999888765

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=7.8e-19  Score=172.06  Aligned_cols=236  Identities=14%  Similarity=0.036  Sum_probs=168.1

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY  245 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~  245 (438)
                      .|.+.++|+    .+++++|.+.      +  ++|++||.|+.+|+.++.-    ++|   ++|++|..+|.+...++..
T Consensus        30 G~~v~~~E~----~la~~~g~~~------a--i~~~sgt~Al~~al~al~~----~~g---deVi~~~~~~~~~~~ai~~   90 (376)
T d1mdoa_          30 GPKNQELEA----AFCRLTGNQY------A--VAVSSATAGMHIALMALGI----GEG---DEVITPSMTWVSTLNMIVL   90 (376)
T ss_dssp             SHHHHHHHH----HHHHHHCCSE------E--EEESCHHHHHHHHHHHTTC----CTT---CEEEEESSSCHHHHHHHHH
T ss_pred             CHHHHHHHH----HHHHHHCcCe------E--EEeCCHHHHHHHHHHHhCC----CCC---CEEEEecccccccccchhc
Confidence            466666665    6999999863      2  7889999999999998631    367   8999999999999999999


Q ss_pred             cCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          246 FNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       246 ~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      .|.+++.+++++ ++.+|+++|+++|+++|++|+++|.   .|...|+++|.++|+++|+++++|+|++-+...      
T Consensus        91 ~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~---~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~------  161 (376)
T d1mdoa_          91 LGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHY---AGAPADLDAIYALGERYGIPVIEDAAHATGTSY------  161 (376)
T ss_dssp             TTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE------
T ss_pred             cccceeeecccccccCCCHHHHHHhcCCCCeEEEEeCC---CCCccchhHHHHHHHhcCceEEeccchhccCee------
Confidence            999999999997 7899999999999999999998764   899999999999999999999999997533210      


Q ss_pred             CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc-cccCCCc--------c--CCCCccCCCCCch
Q 013675          325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV-TEWSGGL--------Y--VSPTVAGSRPGGL  393 (438)
Q Consensus       325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~-~~~~g~~--------~--~~~~~~gsr~~~~  393 (438)
                         ........|...+|+.++|.+.++. .|+++++++++........ ..+....        .  ......|......
T Consensus       162 ---~~~~~g~~g~~~~Sf~~~K~l~~g~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~  237 (376)
T d1mdoa_         162 ---KGRHIGARGTAIFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLP  237 (376)
T ss_dssp             ---TTEETTSSSEEEEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCC
T ss_pred             ---CCeecccccCccccCCCcCCCCCCC-CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccc
Confidence               0112233456778888999975544 4888888776544321111 0000000        0  0001112111111


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                        ..-+++.....+.+.+..++..++++++.+.|++++.+.+
T Consensus       238 --~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~  277 (376)
T d1mdoa_         238 --DLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPL  277 (376)
T ss_dssp             --HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEEC
T ss_pred             --hhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccccccccc
Confidence              2223333333466788899999999999999998876543

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.80  E-value=2.2e-18  Score=169.43  Aligned_cols=241  Identities=14%  Similarity=0.165  Sum_probs=178.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DK  241 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~  241 (438)
                      ..++.+.++.+++++.+++++|.++..     +-+++.|||+++..++..+..     +|   +++++....|++.  ..
T Consensus        43 hr~~ef~~i~~~~r~~L~~ll~~~~~~-----~i~~~gsgT~a~ea~~~~l~~-----~~---~~vl~~~~g~~~~~~~~  109 (388)
T d2ch1a1          43 NFHAELFRTMDEVKDGLRYIFQTENRA-----TMCVSGSAHAGMEAMLSNLLE-----EG---DRVLIAVNGIWAERAVE  109 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCCSC-----EEEESSCHHHHHHHHHHHHCC-----TT---CEEEEEESSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCe-----EEEEcCcHHHHHHHHHHHhcc-----cc---ccccccccccccccchh
Confidence            357888899999999999999997665     336788999999999988763     55   7888888887764  45


Q ss_pred             HHhhcCcEEEEeeCCCCCccCHHHHHHhh-ccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675          242 AAQYFNIKLWRVPVDKEFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I-~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~  320 (438)
                      .+..++...+.++.++....+.++.++++ +.+++++++++.+|.+|.+.|+++|+++|+++|++++||++++.+..   
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~---  186 (388)
T d2ch1a1         110 MSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGV---  186 (388)
T ss_dssp             HHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB---
T ss_pred             hhhhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeeccccc---
Confidence            56777888888888777777777777766 45789999999999999999999999999999999999999754433   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC-------------CCccCCCCccC
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS-------------GGLYVSPTVAG  387 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~-------------g~~~~~~~~~g  387 (438)
                              ++|+...++|+++++.||++++|+|+|+++.+.+.+...... ...+.             ..........+
T Consensus       187 --------pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (388)
T d2ch1a1         187 --------PFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNR-RTKSKVFYWDLLLLGNYWGCYDEPKRYHH  257 (388)
T ss_dssp             --------CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTC-SSCCSCGGGCHHHHHHHTTCSSSCCCCCC
T ss_pred             --------ccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcc-cCccccccccchhhhhhhcccccccccCc
Confidence                    588889999999999999999999999988876543321110 00000             00001111222


Q ss_pred             CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675          388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL  429 (438)
Q Consensus       388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~  429 (438)
                      +.....+.++..+++.+...+.....++......+....+..
T Consensus       258 t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (388)
T d2ch1a1         258 TVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK  299 (388)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence            233334566777777777777777777777777777776654

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.80  E-value=3.8e-18  Score=166.83  Aligned_cols=241  Identities=15%  Similarity=0.091  Sum_probs=174.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~a  242 (438)
                      .++.+.++.+++++.+++++|.++..     +-+++.|||+++..++..+..     +|   +++++....|.+.  ...
T Consensus        45 r~~ef~~i~~~~r~~l~~ll~~~~~~-----~i~~~g~gT~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~  111 (377)
T d1vjoa_          45 LDPAFLALMDEIQSLLRYVWQTENPL-----TIAVSGTGTAAMEATIANAVE-----PG---DVVLIGVAGYFGNRLVDM  111 (377)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSC-----EEEESSCHHHHHHHHHHHHCC-----TT---CEEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCe-----EEEEcCcHHHHHHHHHHhccc-----cc---cccceeeechhhhhhhhh
Confidence            46788899999999999999998765     337889999999999888653     45   7788887777663  445


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHH-HhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIK-KYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le-~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      +...+.....+....+...+.+..+ ...++++.++++++.+|.+|.+.|+++|+++||++|+.+++|++++.+..    
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~----  187 (377)
T d1vjoa_         112 AGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGV----  187 (377)
T ss_dssp             HHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTS----
T ss_pred             hhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhh----
Confidence            5566777777766554444555444 44566899999999999999999999999999999999999999753332    


Q ss_pred             hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC---c-------cCCCCccCCCCC
Q 013675          322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG---L-------YVSPTVAGSRPG  391 (438)
Q Consensus       322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~---~-------~~~~~~~gsr~~  391 (438)
                             ++++...++|+++++.|||+++|+|+|+++.+++.+... ......+...   .       .......++...
T Consensus       188 -------~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (377)
T d1vjoa_         188 -------PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKL-QRRRTKVANWYLDMNLLGKYWGSERVYHHTAPI  259 (377)
T ss_dssp             -------CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHH-HTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCH
T ss_pred             -------hhcccccccceeeecccccccCCCEEEEecchhhHHhhh-hccCCCCcceeeccchhhhccCcccccccccce
Confidence                   578888999999999999999999999988776433221 1111111100   0       000111111122


Q ss_pred             chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..+..+-+++......|.+...++..+.++++.+.+.+.
T Consensus       260 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~  298 (377)
T d1vjoa_         260 NLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI  298 (377)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             echhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc
Confidence            233445555556677888999999999999999999875

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.78  E-value=2.9e-19  Score=180.37  Aligned_cols=242  Identities=11%  Similarity=-0.031  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHH-HHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc-CcE--
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESI-LLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF-NIK--  249 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~-~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~-Gi~--  249 (438)
                      .+.++.+|+++|++..        +|+++||++. ..++.+..     ++|   |+||++..+|.|+...+..+ +..  
T Consensus        69 ~eae~~~A~~~ga~~a--------~f~~~Gtt~~n~a~i~a~~-----~~g---d~Vi~~~~~H~Sv~~~~~~l~~~~~~  132 (462)
T d1c4ka2          69 VAAEKHAARVYNADKT--------YFVLGGSSNANNTVTSALV-----SNG---DLVLFDRNNHKSVYNSALAMAGGRPV  132 (462)
T ss_dssp             HHHHHHHHHHTTCSEE--------EEESSHHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred             HHHHHHHHHHhCCCeE--------EEECCchHHHHHHHHHHhc-----CCC---CeEEecccchHHHHHHHHHHhcCCce
Confidence            4456679999999743        5666665554 45455544     477   99999999999999877766 333  


Q ss_pred             EEEeeCCCCC--------ccCHHH---------HHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675          250 LWRVPVDKEF--------RADVKA---------IKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       250 v~~v~~~~~~--------~~d~~~---------Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~  312 (438)
                      +..+++++.+        .++.+.         +++++..+|..+++.+.+|..|.+.|+++|+++|+++|+++|+|+|+
T Consensus       133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~  212 (462)
T d1c4ka2         133 YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAW  212 (462)
T ss_dssp             EECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTT
T ss_pred             eeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechh
Confidence            3444445433        233333         34445556776666777777999999999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCC---CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          313 GGFVLPFAKKLGYPIP---PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p---~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      ++.... .........   .-.....++|++++|+||++.++.|++++..++..+..........+.. ........++.
T Consensus       213 ~~~~~~-~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~sp  290 (462)
T d1c4ka2         213 VGYEQF-IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFN-NSFNLFMSTSP  290 (462)
T ss_dssp             CCGGGS-SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHH-HHHHHHSCSSC
T ss_pred             hccccc-cCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHH-HhhhhcccCCc
Confidence            876542 111000000   0011234679999999999777777666666654432211000000000 00000112233


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                      +...++++-++...+..+..++..++..++++++++++.++++.
T Consensus       291 ~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~  334 (462)
T d1c4ka2         291 FYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSM  334 (462)
T ss_dssp             CHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            33456677777777777777888999999999999999987654

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=5e-18  Score=166.94  Aligned_cols=194  Identities=16%  Similarity=0.152  Sum_probs=150.4

Q ss_pred             HHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCC
Q 013675          149 NEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR  226 (438)
Q Consensus       149 ~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~  226 (438)
                      .+++...+..+..+|....|..++.+++.+++.+..|.+  +++    +  ++|+|+++++..++.++.+     +|   
T Consensus        50 ~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~----i--~it~G~~~al~~~~~~l~~-----~g---  115 (382)
T d1b5pa_          50 KEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEE----T--IVTVGGSQALFNLFQAILD-----PG---  115 (382)
T ss_dssp             HHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---
T ss_pred             HHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhccccccccc----c--eecCCHHHHHHHHHHHhCC-----CC---
Confidence            344444444445566667778888888888988887764  444    6  8999999999999998863     67   


Q ss_pred             CeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHH
Q 013675          227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALS  301 (438)
Q Consensus       227 ~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~  301 (438)
                      +.|+++.+.|+.+..+++..|.+++.+|+++  ++.+|+++++++++++++++++++|+||||.+.+   +++|.++|++
T Consensus       116 d~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~  195 (382)
T d1b5pa_         116 DEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVE  195 (382)
T ss_dssp             CEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHH
Confidence            8999999999999999999999999999875  5789999999999999999999999999999976   6789999999


Q ss_pred             cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecc
Q 013675          302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNR  362 (438)
Q Consensus       302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~  362 (438)
                      ||++++.|++|+.+...     +...++... ...-.++..++.|.+. .+..+|+++..++
T Consensus       196 ~~~~ii~De~y~~~~~~-----~~~~~~~~~-~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~  251 (382)
T d1b5pa_         196 HDFYLVSDEIYEHLLYE-----GEHFSPGRV-APEHTLTVNGAAKAFAMTGWRIGYACGPKE  251 (382)
T ss_dssp             TTCEEEEECTTTTCBSS-----SCCCCGGGT-CTTTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred             cCeEEEEEccccceecC-----CCCCCHHHc-CCCCEEEEecchhhccCcHhheEEEEECHH
Confidence            99999999999866531     111111111 1223466678889843 3466999776543

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=7.8e-18  Score=165.67  Aligned_cols=187  Identities=17%  Similarity=0.210  Sum_probs=143.7

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          160 PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      ..+|....|..++.+.+.+++.+..+..... ..++  ++|+|+++++.+++.++.+     +|   ++|+++.++|+.+
T Consensus        55 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-~~~i--~~t~G~~~~l~~~~~~l~~-----~g---d~vlv~~P~y~~~  123 (388)
T d1gdea_          55 LTHYGPNIGLLELREAIAEKLKKQNGIEADP-KTEI--MVLLGANQAFLMGLSAFLK-----DG---EEVLIPTPAFVSY  123 (388)
T ss_dssp             CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT-TTSE--EEESSTTHHHHHHHTTTCC-----TT---CEEEEEESCCTTH
T ss_pred             ccCCCCCcCCHHHHHHHHHHHHhhccccCCC-hhee--eeccCcchHHHHHHHHhcC-----CC---CEEEECCCCcHHH
Confidence            3445556677888888888887766643211 1126  8899999999999998763     77   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                      ..+++.+|++++.+|+++  ++.+|+++|+++++++++++++++|+||||.+.+   +++|.++|++|++++++|++|+.
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~  203 (388)
T d1gdea_         124 APAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEH  203 (388)
T ss_dssp             HHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             HHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChh
Confidence            999999999999999974  6789999999999999999999999999999966   77888999999999999999986


Q ss_pred             hhhhhhhhcCCCCCCCc-cC-CCCccEEEeCCCCCCC-CCCCcEEEEEecc
Q 013675          315 FVLPFAKKLGYPIPPFD-FS-VQGVTSISVDVHKYGL-APKGTSVVLYRNR  362 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~-~~-~~gvdsis~s~hK~~~-~p~g~g~l~~r~~  362 (438)
                      +...   ...  .+++. .. ...-.++..+..|.+. .+..+|+++..++
T Consensus       204 ~~~~---~~~--~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~  249 (388)
T d1gdea_         204 FIYD---DAR--HYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSW  249 (388)
T ss_dssp             CBCT---TCC--CCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred             hhhc---cCC--CCChhhccCCCCeEEEEeCChhhccCccccEEEEEeecc
Confidence            6431   111  11111 11 1122577778999743 4467999776543

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=4.7e-18  Score=165.13  Aligned_cols=240  Identities=11%  Similarity=0.008  Sum_probs=170.3

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a  242 (438)
                      .++.+.++.+++++.++++++.+...    +  ++++|||+++.+++..+..     +|   +++++....+++  +.+.
T Consensus        27 r~~~f~~i~~~~~~~l~~ll~~~~~~----i--~~~gsgT~a~e~~~~nl~~-----~g---~~vlv~~~G~f~~~~~~~   92 (348)
T d1iuga_          27 RTEAAREVFLKARGLLREAFRTEGEV----L--ILTGSGTLAMEALVKNLFA-----PG---ERVLVPVYGKFSERFYEI   92 (348)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCSSEE----E--EEESCHHHHHHHHHHHHCC-----TT---CEEEEEECSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCE----E--EEeCchHHHHHHHHHhccc-----cc---ccceeecchHHHHHHHHH
Confidence            46778899999999999999987653    3  8999999999999888652     56   788888777665  6677


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC--CeEEEeccccchhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLGGFVLPFA  320 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~--i~lhVD~a~gg~~~pf~  320 (438)
                      ++.+|.+++.++.+.....++++   ..+.++..++++|.+|.+|.+.|+++|+++|++++  ..++||++++.+..   
T Consensus        93 a~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~---  166 (348)
T d1iuga_          93 ALEAGLVVERLDYPYGDTPRPED---VAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVG---  166 (348)
T ss_dssp             HHHTTCEEEEEECCTTCCCCTTT---SCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTB---
T ss_pred             HHhcCcccccccccCCCcccccc---ccccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhccccc---
Confidence            88889988888876544444433   34567889999999999999999999999999985  68999999654333   


Q ss_pred             hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh-cccccCC--CccCCCCccCCCCCchHHHH
Q 013675          321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSG--GLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~-~~~~~~g--~~~~~~~~~gsr~~~~ia~~  397 (438)
                              ++++..+++|++++++||++++|+|+|+++++++.+.+..-. ...+|..  ..+......++.+-..++++
T Consensus       167 --------~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l  238 (348)
T d1iuga_         167 --------EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAV  238 (348)
T ss_dssp             --------CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred             --------ccccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHH
Confidence                    577888899999999999989999999999987654332100 0001100  00111223445566678888


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ..+|+.+-.++. +..++.....+.+++.+++. |++
T Consensus       239 ~~aL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-gl~  273 (348)
T d1iuga_         239 AAVLEEVLPRLE-EHLALKAWQNALLYGVGEEG-GLR  273 (348)
T ss_dssp             HHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             HHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhh-hhc
Confidence            889887655543 33333333444455444443 443

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.77  E-value=9.1e-18  Score=166.71  Aligned_cols=252  Identities=18%  Similarity=0.169  Sum_probs=172.6

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCC--------CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGN--------KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP  232 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--------~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~  232 (438)
                      ..|....|..++.+.+.+++.+.++.        ++++    +  ++|+|+++++.++++++.+     +|   |+|+++
T Consensus        66 ~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~----I--~it~G~~~al~~~~~~l~~-----~G---d~Vlv~  131 (412)
T d1bw0a_          66 NGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN----V--VLCSGGSHGILMAITAICD-----AG---DYALVP  131 (412)
T ss_dssp             SSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEE
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCe----E--EEecccccchhhhhhhhhc-----cc---cceeee
Confidence            34555667778888888999887643        3333    6  8999999999999998763     77   999999


Q ss_pred             CCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEE
Q 013675          233 VSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLH  307 (438)
Q Consensus       233 ~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lh  307 (438)
                      .++|+.+...++..|++++.+|+++  ++..|+++++++++++++++++++|+||||.+.+   +++|.++|++++++++
T Consensus       132 ~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi  211 (412)
T d1bw0a_         132 QPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLF  211 (412)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEE
T ss_pred             eccchhhhhhhhccCccccccccccccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeee
Confidence            9999999999999999999999975  6789999999999999999999999999999965   6788889999999999


Q ss_pred             EeccccchhhhhhhhcCCC--CCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEecccccccchhcccccCCCccCCCC
Q 013675          308 VDLCLGGFVLPFAKKLGYP--IPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT  384 (438)
Q Consensus       308 VD~a~gg~~~pf~~~~g~~--~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~  384 (438)
                      +|++|..+...  ......  ....+.......++..++.|. +..+..+|+++..++............... .    .
T Consensus       212 ~De~Y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~-~----~  284 (412)
T d1bw0a_         212 SDEIYAGMVFK--GKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-M----L  284 (412)
T ss_dssp             EECTTTTCBCC--SSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-H----H
T ss_pred             chhhHHHhccC--CCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccc-c----c
Confidence            99999866531  000000  000011111113445566786 445677999888765332211000000000 0    0


Q ss_pred             ccCCCCCch-HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          385 VAGSRPGGL-IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       385 ~~gsr~~~~-ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .  ..+... .+.+...+.....+.+.+..++..+.++.+.+.|.+.+|+++
T Consensus       285 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~  334 (412)
T d1bw0a_         285 V--CGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP  334 (412)
T ss_dssp             H--TCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             c--cCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCcee
Confidence            0  000111 111222222224567788888899999999999988777754

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.9e-17  Score=159.07  Aligned_cols=259  Identities=14%  Similarity=0.114  Sum_probs=169.3

Q ss_pred             HHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675          148 INEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP  227 (438)
Q Consensus       148 ~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~  227 (438)
                      +.+++...+....+.|....+ .++.+.+.+++.+.+|.+.+.  ++|  ++|+|+++++..++.++.+     +|   |
T Consensus        17 i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~--~~i--~it~G~~~~l~~~~~~l~~-----~g---d   83 (361)
T d1d2fa_          17 IIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDS--QTV--VYGPSVIYMVSELIRQWSE-----TG---E   83 (361)
T ss_dssp             HHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCG--GGE--EEESCHHHHHHHHHHHSSC-----TT---C
T ss_pred             HHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCc--ceE--EEeCCHHHHHHHHhhhccc-----cc---c
Confidence            334444444433344544555 467888888999988875321  126  9999999999999888763     67   8


Q ss_pred             eEEecCCCcCcHHHHHhhcCcEEEEeeCCC---CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccC---HHHHHHHHH
Q 013675          228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK---EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP---IQELGELAL  300 (438)
Q Consensus       228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~idd---i~~I~~la~  300 (438)
                      +|+++.+.|+.+..+++..|.+++.++.+.   ++.+|++++++.+.+ +++++++++|+||||.+.+   +++|+++|+
T Consensus        84 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~  163 (361)
T d1d2fa_          84 GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCE  163 (361)
T ss_dssp             EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhh
Confidence            999999999999999999999999988753   557999999999854 7899999999999998866   779999999


Q ss_pred             HcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEecccccccchhcccccCCCc
Q 013675          301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL  379 (438)
Q Consensus       301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~  379 (438)
                      ++|+++++|++|+.+...  ...   .+++......-.++..+..|. +....++|++.+.++..+...........   
T Consensus       164 ~~~~~lI~De~y~~~~~~--~~~---~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~---  235 (361)
T d1d2fa_         164 RHGVRVISDEIHMDMVWG--EQP---HIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRD---  235 (361)
T ss_dssp             HTTCEEEEECTTTTCBCS--SSC---CCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTS---
T ss_pred             hhheeeeecccccccccc--ccc---ccccccccccccccccccccccccccccceeeecchhHHHHHHhhhccccc---
Confidence            999999999999866531  110   112222222234566666774 44556789887765543332111110000   


Q ss_pred             cCCCCccCCCCCc-hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCcc
Q 013675          380 YVSPTVAGSRPGG-LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFL  434 (438)
Q Consensus       380 ~~~~~~~gsr~~~-~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~  434 (438)
                            ..+.+.. .+++...++. ...+..++......+.++.+.+.+.+ .+++.
T Consensus       236 ------~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  285 (361)
T d1d2fa_         236 ------GLSSPSVLALTAHIAAYQ-QGAPWLDALRIYLKDNLTYIADKMNAAFPELN  285 (361)
T ss_dssp             ------CCCSCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred             ------ccccchhhhHHHHHHHhh-ccchhhhcccccchhhHHHHHHHhhhhccccc
Confidence                  0011111 1222222222 23455566666666777777776654 44443

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.76  E-value=1e-17  Score=165.61  Aligned_cols=259  Identities=16%  Similarity=0.138  Sum_probs=177.5

Q ss_pred             HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE
Q 013675          150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM  229 (438)
Q Consensus       150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V  229 (438)
                      +++...+.....+|....|..++.+.+.+++.+.+|.+.+.  .++  ++|+|+++++.+++.++.+     +|   ++|
T Consensus        53 ~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--~~i--~i~~G~~~~~~~~~~~~~~-----~G---d~v  120 (395)
T d1xi9a_          53 EAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP--DDV--RVTAAVTEALQLIFGALLD-----PG---DEI  120 (395)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--GGE--EEESHHHHHHHHHHHHHCC-----TT---CEE
T ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccc--ccc--ccccccchhhhhhhhhhcC-----CC---CEE
Confidence            33333333333346566777888999999999998875322  126  8899999999999988764     77   899


Q ss_pred             EecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCC
Q 013675          230 IIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGT  304 (438)
Q Consensus       230 iv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i  304 (438)
                      +++.++|+.+...++..|.+++.+|.+.  ++.+|++++++++.++++++++++|+||||.+.+   +++|+++|++|++
T Consensus       121 lv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~  200 (395)
T d1xi9a_         121 LVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEI  200 (395)
T ss_dssp             EEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCe
Confidence            9999999999999999999999998753  7889999999999999999999999999999977   6788999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccc-cCCCccCC
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTE-WSGGLYVS  382 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~-~~g~~~~~  382 (438)
                      +++.|.+|..+...   .. . .++.......-.++..|+.|... .+..+|++++.+.......+..... +...    
T Consensus       201 ~ii~De~y~~~~~~---~~-~-~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~----  271 (395)
T d1xi9a_         201 PVISDEIYDLMTYE---GE-H-ISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARI----  271 (395)
T ss_dssp             CEEEECTTTTCBSS---SC-C-CCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHH----
T ss_pred             eEEecccccccccc---cc-c-cchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcC----
Confidence            99999999764431   00 0 11111111112466678899733 3455898776554322111100000 0000    


Q ss_pred             CCccCCCCCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          383 PTVAGSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       383 ~~~~gsr~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                          ...+...  ++.++...+  +.+.+++..+...+.++.+.+.|++++++.+
T Consensus       272 ----~~~~~~~--~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  320 (395)
T d1xi9a_         272 ----RLCPNTP--AQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST  320 (395)
T ss_dssp             ----TCCSCSH--HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             ----CCCcCHH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence                0000111  222222222  4567788888888999999999998876543

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.75  E-value=6.3e-17  Score=157.97  Aligned_cols=224  Identities=17%  Similarity=0.145  Sum_probs=170.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH--
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK--  241 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~--  241 (438)
                      ...|....+|+    .++.+-|...        ++++++|..|+..++.++.     ++|   ++|+++...|.....  
T Consensus        60 ~~nPT~~~LE~----~la~LEgg~~--------a~~~sSGmaAi~~~l~~ll-----~~G---d~vi~~~~~Yg~t~~~~  119 (397)
T d1y4ia1          60 LGNPTTDALEK----KLAVLERGEA--------GLATASGISAITTTLLTLC-----QQG---DHIVSASAIYGCTHAFL  119 (397)
T ss_dssp             TSCHHHHHHHH----HHHHHHTCSE--------EEEESSHHHHHHHHHHHHC-----CTT---CEEEEESSSCHHHHHHH
T ss_pred             CCCHHHHHHHH----HHHHHhCCcc--------ceeehHHHHHHHHHHhhcc-----CCC---Ceeeeecccccccchhh
Confidence            45577666666    5888887753        3788999999999998876     378   999999999877544  


Q ss_pred             --HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          242 --AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       242 --a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                        ....+|+++..++..     |+++++++|+++|++|++..|+||+..+.||++|+++||++|++++||.+++..+.  
T Consensus       120 ~~~l~~~Gi~~~~vd~~-----d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~--  192 (397)
T d1y4ia1         120 SHSMPKFGINVRFVDAG-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC--  192 (397)
T ss_dssp             HTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT--
T ss_pred             hcccCCCceEeeccCCC-----CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCccc--
Confidence              455669999999864     79999999999999999999999999999999999999999999999999765332  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCC--CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                                ++....|+|++.-|..||..|-  .-.|+++.+++.+.+..+.......|          .-.+.  ..+
T Consensus       193 ----------~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G----------~~l~p--~~a  250 (397)
T d1y4ia1         193 ----------QQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITG----------GCMSP--FNA  250 (397)
T ss_dssp             ----------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTC----------CCCCH--HHH
T ss_pred             ----------CcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcC----------CcCCH--HHH
Confidence                      2334458999999999995332  22677666655433222211111112          22222  267


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      |..+  .|.+-+.-+.++..++|..+++.|+++|.++-++|
T Consensus       251 ~l~~--rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  289 (397)
T d1y4ia1         251 WLTL--RGVKTLGIRMERHCENALKIARFLEGHPSITRVYY  289 (397)
T ss_dssp             HHHH--HHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             HHHH--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeC
Confidence            7777  46677889999999999999999999998876554

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=2.4e-17  Score=160.84  Aligned_cols=224  Identities=17%  Similarity=0.161  Sum_probs=169.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      ...|....+|+    .++++-|...        ++.+++|..|+..++.++.     ++|   |+|+++...|......+
T Consensus        56 ~~nPT~~~LE~----~la~LEg~~~--------a~~~~SGmaAi~~~l~~l~-----~~G---d~vl~~~~~Yg~t~~l~  115 (392)
T d1gc0a_          56 ISNPTLNLLEA----RMASLEGGEA--------GLALASGMGAITSTLWTLL-----RPG---DEVLLGNTLYGCTFAFL  115 (392)
T ss_dssp             -CCHHHHHHHH----HHHHHHTCSE--------EEEESSHHHHHHHHHHHHC-----CTT---CEEEEESSCCSHHHHHH
T ss_pred             CCChHHHHHHH----HHHHHhCCcc--------eeehhhHHHHHHHHHHhhc-----cCC---Ceeecccccchhhhhhh
Confidence            34566666666    5888888753        3788999999999998876     378   99999999998865554


Q ss_pred             h----hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          244 Q----YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       244 ~----~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      +    .+|+++..++..     |+++++++|+++|++|++..|+||+..+.||++|+++||++|++++||.+++..+.  
T Consensus       116 ~~~~~~~Gi~~~~~d~~-----d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~--  188 (392)
T d1gc0a_         116 HHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL--  188 (392)
T ss_dssp             HHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH--
T ss_pred             hhhhccCCcccccCCcc-----CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccc--
Confidence            4    459999999764     89999999999999999999999999999999999999999999999999875443  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCC--CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                             ..|++   .|+|++.-|..||..|-  .-.|++..+++.+.+..........|          .-...  -.+
T Consensus       189 -------~~Pl~---~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G----------~~~~p--~da  246 (392)
T d1gc0a_         189 -------QRPLE---LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG----------AVLSP--HDA  246 (392)
T ss_dssp             -------CCGGG---GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTC----------CCCCH--HHH
T ss_pred             -------cChHH---hCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccC----------CcCCh--hhH
Confidence                   12343   58999999999995332  22576666655433221111111112          22222  267


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      |..+  .|.+-+..+.++..++|..+++.|++.|.++-+.|
T Consensus       247 ~ll~--rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  285 (392)
T d1gc0a_         247 ALLM--RGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHY  285 (392)
T ss_dssp             HHHH--HHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred             HHHH--hccccHHHHHHHHHHHHHHHHHHHHhCCCccEEee
Confidence            7776  56688899999999999999999999998875443

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.75  E-value=3e-17  Score=161.59  Aligned_cols=236  Identities=19%  Similarity=0.141  Sum_probs=168.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~  244 (438)
                      ..|.+.++|+    .+++++|.+..        +.|++||.|+.+|++++.-    ++|   ++|++|..++++...++.
T Consensus        32 ~g~~v~~fE~----~~a~~~g~~~~--------v~~~SGt~Al~lal~~l~~----~~g---deVi~p~~t~~a~~~ai~   92 (384)
T d1b9ha_          32 GGDEVNSFER----EFAAHHGAAHA--------LAVTNGTHALELALQVMGV----GPG---TEVIVPAFTFISSSQAAQ   92 (384)
T ss_dssp             TCSHHHHHHH----HHHHHTTCSEE--------EEESCHHHHHHHHHHHTTC----CTT---CEEEEESSSCTHHHHHHH
T ss_pred             CCHHHHHHHH----HHHHHHCcCeE--------EEeCCHHHHHHHHHHHcCC----CCC---CEEEEecccccccccccc
Confidence            3566777776    58889998742        8999999999999998631    367   899999999999999999


Q ss_pred             hcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675          245 YFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL  323 (438)
Q Consensus       245 ~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~  323 (438)
                      ..|.+++.+++++ ++.+|++.+++.++++|++|++++   ..|...|+++|.++|++++++++.|+|++-+...    -
T Consensus        93 ~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~---~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~----~  165 (384)
T d1b9ha_          93 RLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVH---MAGLMADMDALAKISADTGVPLLQDAAHAHGARW----Q  165 (384)
T ss_dssp             HTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE----T
T ss_pred             ccccccccccccccccccchhhhccccccccccccccc---ccccccccccchhhhhhhhhhhhhhhceeccccc----C
Confidence            9999999999986 889999999999999999987655   4899999999999999999999999997643321    0


Q ss_pred             CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc-ccCCCcc---CCCCccC--CCCCchHHHH
Q 013675          324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLY---VSPTVAG--SRPGGLIAGA  397 (438)
Q Consensus       324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~~---~~~~~~g--sr~~~~ia~~  397 (438)
                      |.    .-.....+.++|+++.|...++. .|+++++++++......... .+.....   ......|  .|...+-   
T Consensus       166 g~----~~g~~g~~~~~Sf~~~K~i~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~---  237 (384)
T d1b9ha_         166 GK----RVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFS---  237 (384)
T ss_dssp             TE----EGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHH---
T ss_pred             CE----ecCcccccceecccccccccccc-cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccch---
Confidence            10    00011225678888899965544 47788888876543211111 1100000   0011222  2333332   


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                       +++.....+.+++..++..++++++.+.|++++++.+
T Consensus       238 -Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~  274 (384)
T d1b9ha_         238 -ASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVP  274 (384)
T ss_dssp             -HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred             -hhhhhhhhhhcccchhhhhhhhhhhhhhhhccccccc
Confidence             2222233356788889999999999999999888753

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=2.4e-16  Score=154.98  Aligned_cols=242  Identities=19%  Similarity=0.176  Sum_probs=172.6

Q ss_pred             CCCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCc
Q 013675          159 NPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH  236 (438)
Q Consensus       159 n~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h  236 (438)
                      +...|....|..++.+.+.+++.+..|.+  +++    +  ++|+|+++++..++.++.+     +|   +.|+++.+.+
T Consensus        56 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~----I--~it~G~~~~l~~~~~~l~~-----~g---d~V~i~~P~y  121 (389)
T d2gb3a1          56 EVVYYSHSAGIWELREAFASYYKRRQRVDVKPEN----V--LVTNGGSEAILFSFAVIAN-----PG---DEILVLEPFY  121 (389)
T ss_dssp             SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCC
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccce----E--Eeccccccccccccccccc-----CC---CeEEEeCCCC
Confidence            34556667778889999999999888865  444    6  8999999999999998874     67   8999999999


Q ss_pred             CcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675          237 SAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       237 ~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~  312 (438)
                      +.+...+...|.+++.++.++ ++..+.+.+...++++++++++++|+||||.+.+   +++|.++|++++++++.|.+|
T Consensus       122 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y  201 (389)
T d2gb3a1         122 ANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVY  201 (389)
T ss_dssp             THHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             ccccccccccCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccc
Confidence            999999999999999999876 5556667788888899999999999999999866   789999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675          313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG  391 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~  391 (438)
                      +.+...     +...+...... .-..+..++.|. +..+..+|+++..++.+..........+..            +.
T Consensus       202 ~~~~~~-----~~~~~~~~~~~-~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~------------~~  263 (389)
T d2gb3a1         202 SEIVFR-----GEFASALSIES-DKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLA------------PP  263 (389)
T ss_dssp             TTCBCS-----SCCCCGGGSCC-TTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCC------------CC
T ss_pred             cccccc-----ccccccccccc-ccccccccccccccCcccceeeeeccchhHHHHHhhhhhcccc------------cc
Confidence            765431     11011111112 224445565555 444467999877665444322111111111            01


Q ss_pred             chHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          392 GLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       392 ~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                        .....++...+  .+..+++..++..+.++++.+.|+++++..
T Consensus       264 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  306 (389)
T d2gb3a1         264 --LLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKR  306 (389)
T ss_dssp             --HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             --ccccccccccccccchhcccccccccccchhhhhhhhhhcccc
Confidence              11222222222  456678888888999999999999886543

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.71  E-value=1.4e-16  Score=158.95  Aligned_cols=240  Identities=14%  Similarity=0.173  Sum_probs=160.9

Q ss_pred             chhHHHHHHHHHHHHHHHhCCC----CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNK----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~----~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      ..|..++.+++.+++.+.+|..    +++    +  ++|+|+++++.+++.++.+     +|   |+|+++.+.|+++..
T Consensus        82 ~~G~~~LR~aiA~~l~~~~~~~~~~~~e~----I--vit~G~~~al~~~~~~l~~-----~G---d~Vlv~~P~y~~~~~  147 (428)
T d1iaya_          82 YHGLPEFRKAIAKFMEKTRGGRVRFDPER----V--VMAGGATGANETIIFCLAD-----PG---DAFLVPSPYYPAFNR  147 (428)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTTCSCCCTTS----C--EEEEHHHHHHHHHHHHHCC-----TT---CEEEEESSCCTTHHH
T ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCChhh----E--EEcCCHHHHHHHHHHHhCC-----CC---CEEEEccCCchHHHH
Confidence            4456678888888999888743    444    7  8999999999999998763     78   999999999999998


Q ss_pred             HHhhc-CcEEEEeeCCC--CCccCHHHHHHhh------ccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          242 AAQYF-NIKLWRVPVDK--EFRADVKAIKKYI------NRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       242 a~~~~-Gi~v~~v~~~~--~~~~d~~~Le~~I------~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      .+... |++++.+++++  ++.+|++++++++      +.+++++++++|+||||.+.+   +++|.++|++||+++++|
T Consensus       148 ~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~D  227 (428)
T d1iaya_         148 DLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCD  227 (428)
T ss_dssp             HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEec
Confidence            88755 89999999875  6789999887664      346889999999999999876   688999999999999999


Q ss_pred             ccccchhhh------hhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCC
Q 013675          310 LCLGGFVLP------FAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVS  382 (438)
Q Consensus       310 ~a~gg~~~p------f~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~  382 (438)
                      ++|+.+...      +.+-.+.  .........-.++..++.|.+ .++..+|+++..++.+.+...... .+..     
T Consensus       228 e~Y~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~-~~~~-----  299 (428)
T d1iaya_         228 EIYAATVFDTPQFVSIAEILDE--QEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS-SFGL-----  299 (428)
T ss_dssp             CTTGGGCCSSSCCCCHHHHHTS--GGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH-TTSC-----
T ss_pred             ccccccccCcccccccccccch--hhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhh-cccc-----
Confidence            999865431      0000000  000011112246778899963 445679998776655543221111 0000     


Q ss_pred             CCccCCCCCchHHHHHHHH---HHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          383 PTVAGSRPGGLIAGAWAAL---MSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       383 ~~~~gsr~~~~ia~~~aal---~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                             .........++.   .....+.+++..++..+..+.+.+.|+.. |+++
T Consensus       300 -------~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~  347 (428)
T d1iaya_         300 -------VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKC  347 (428)
T ss_dssp             -------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             -------cccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEE
Confidence                   001111111111   11122345566666777788888888763 6654

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=9.8e-17  Score=156.63  Aligned_cols=237  Identities=16%  Similarity=0.086  Sum_probs=160.5

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      .|...++..++    ++.+++.++.++++    +  ++|+|+++++..++.++..     +|   +.|+++.+.|+.+..
T Consensus        56 ~Y~~~~G~~el----r~aiA~~~~~~~~~----I--iit~G~~~al~~~~~~l~~-----~~---d~v~~~~p~~~~~~~  117 (368)
T d1v2da_          56 QYAPPAGLPAL----REALAEEFAVEPES----V--VVTSGATEALYVLLQSLVG-----PG---DEVVVLEPFFDVYLP  117 (368)
T ss_dssp             SCCCTTCCHHH----HHHHHHHHTSCGGG----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEEESCCTTHHH
T ss_pred             CCCCCcCCHHH----HHHHHhhcccCCcc----e--eeccchHHHHHHHhhcccc-----cc---ccccccCCcchhhhh
Confidence            34444454444    45678888998886    7  9999999999999988763     66   899999999999999


Q ss_pred             HHhhcCcEEEEeeCC---CCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675          242 AAQYFNIKLWRVPVD---KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~---~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                      .++..|.+++.++++   .++.+|+++++++++++++++++++|+||||.+.+   +++|+++|++||+++++|++|+.+
T Consensus       118 ~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~  197 (368)
T d1v2da_         118 DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDEL  197 (368)
T ss_dssp             HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred             HHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhh
Confidence            999999999988875   35779999999999999999999999999999987   778999999999999999998644


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCC-CCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch-
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVH-KYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL-  393 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~h-K~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~-  393 (438)
                      ...    ..  .+...........+..+.. |++..+..+|++...+ ++..........+...           .... 
T Consensus       198 ~~~----~~--~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~  259 (368)
T d1v2da_         198 YYG----ER--PRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPK-EFMPRLAGMRQWTSFS-----------APTPL  259 (368)
T ss_dssp             BSS----SC--CCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCT-TTHHHHHHHHHHHTSS-----------CCHHH
T ss_pred             ccc----cc--ccccccccccccceeecccccccccccccccccccc-cccchhhhhhhccccc-----------ccccc
Confidence            321    00  1111111111223333333 5666666789866544 4332211111111111           0111 


Q ss_pred             HHHHHHHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          394 IAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       394 ia~~~aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ......++.... .+.+++..+...+.++++.+.|+++ |+++
T Consensus       260 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~  301 (368)
T d1v2da_         260 QAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRV  301 (368)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCE
T ss_pred             ccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEE
Confidence            111222222211 2346677777888889999999886 6654

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.70  E-value=1.3e-16  Score=157.43  Aligned_cols=240  Identities=15%  Similarity=0.093  Sum_probs=163.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCc
Q 013675          169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI  248 (438)
Q Consensus       169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi  248 (438)
                      ..++.+.+.+++.+.+|.+.+.  .+|  ++|+|+++++.++++++.+     +|   ++|+++.+.++.+.......|.
T Consensus        68 ~~~Lr~aia~~~~~~~g~~~~~--~~I--~vt~G~~~al~~~~~~~~~-----pg---d~vi~~~p~~~~~~~~~~~~g~  135 (394)
T d1c7na_          68 TEEYKKTVKKWMKDRHQWDIQT--DWI--INTAGVVPAVFNAVREFTK-----PG---DGVIIITPVYYPFFMAIKNQER  135 (394)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCG--GGE--EEESSHHHHHHHHHHHHCC-----TT---CEEEECSSCCTHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCC--cce--Eeeccchhhhhhhhccccc-----cc---cccccccCcccchhhHHhhhhh
Confidence            4578888999999888875322  136  8999999999999999774     77   9999999999999999999999


Q ss_pred             EEEEeeCCC---CCccCHHHHHHhhc-cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675          249 KLWRVPVDK---EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAK  321 (438)
Q Consensus       249 ~v~~v~~~~---~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~  321 (438)
                      +.+.++.+.   .+.+|.+.++.++. ++|+++++++|+||||.+.+   +++|+++|+++++++++|++|..+...   
T Consensus       136 ~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~---  212 (394)
T d1c7na_         136 KIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP---  212 (394)
T ss_dssp             EEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT---
T ss_pred             cccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccC---
Confidence            999888753   45689999998875 57999999999999999976   667899999999999999999876542   


Q ss_pred             hcCCCCCCCccC---CCCccEEEeCCCCC-CCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          322 KLGYPIPPFDFS---VQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       322 ~~g~~~p~~~~~---~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                      ...  .+.....   .....++..++.|. +.++..+|+++..++.+.+........+...         +......+++
T Consensus       213 ~~~--~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~a~  281 (394)
T d1c7na_         213 GYE--HTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGM---------PFTTLGYKAC  281 (394)
T ss_dssp             TCC--CCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCC---------CCCHHHHHHH
T ss_pred             Ccc--ccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhhcccc---------ccccccchhh
Confidence            111  1111111   11235666778887 3455678888887765543221111111110         0011111122


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP  435 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~  435 (438)
                      .. ......+..++..+...+..+.+.+.++. .++++.
T Consensus       282 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  319 (394)
T d1c7na_         282 EI-CYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA  319 (394)
T ss_dssp             HH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC
T ss_pred             hh-hhcchhhhhcccccccchhhhhhhhhhhccccceee
Confidence            22 22234566677777777777777777764 455543

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=1.3e-16  Score=156.02  Aligned_cols=162  Identities=15%  Similarity=0.146  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE-Eec-CCCcCcHHHHHhhcCcE
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM-IIP-VSAHSAYDKAAQYFNIK  249 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V-iv~-~~~h~s~~~a~~~~Gi~  249 (438)
                      .+.++++..++.++.++.+     ..++|+||++|+..++.++.      +|   ++| +++ .+.|+++...++..|++
T Consensus        51 ~~~~l~~~~~~~~~~~~~e-----~~~~~~~~~~a~~~~l~al~------~~---~~vi~~~~~~~~~~~~~~~~l~g~~  116 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDEND-----KCVGFNRTSSAILATILALK------PK---KVIHYLPELPGHPSIERSCKIVNAK  116 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTE-----EEEEESSHHHHHHHHHHHHC------CS---EEEEECSSSSCCTHHHHHHHHTTCE
T ss_pred             hHHHHHHHHHHHccCCCcc-----EEEEeCCHHHHHHHHHHHhC------CC---CEEEEecCCCcchhHHHHHHhcCCe
Confidence            3455666677778777654     23889999999999998764      44   555 444 57899999999999998


Q ss_pred             EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCC-CccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675          250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFP-HGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP  328 (438)
Q Consensus       250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~-tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p  328 (438)
                      ++  +.+     |+++++++|+++|++|++++|+|| ++.+.|+++|+++|++||+++++|++|+.....   ..+.   
T Consensus       117 ~v--~~~-----d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~---~~~~---  183 (366)
T d2aeua1         117 YF--ESD-----KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRL---LFNQ---  183 (366)
T ss_dssp             EE--EES-----CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHH---HTTC---
T ss_pred             EE--CCC-----CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccc---cccC---
Confidence            64  333     899999999999999999999775 556789999999999999999999999866542   1121   


Q ss_pred             CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       329 ~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                       ......|+|+++.|.||++ ++.+.|+++.+++
T Consensus       184 -~~~~~~~~di~~~S~sK~~-~g~~~G~i~~~~~  215 (366)
T d2aeua1         184 -PPALKLGADLVVTSTDKLM-EGPRGGLLAGKKE  215 (366)
T ss_dssp             -CCHHHHTCSEEEEETTSSS-SSCSCEEEEEEHH
T ss_pred             -CCHhhcCceEEEecccccc-cccceeEEEecHH
Confidence             1122347899999999984 5567798777654

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=4.6e-16  Score=151.32  Aligned_cols=222  Identities=18%  Similarity=0.166  Sum_probs=164.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      ...|....+|+    .++.+-|.+.        ++.+++|..|+. ++.++.     ++|   ++|+++...|......+
T Consensus        46 ~~nPt~~~le~----~la~LE~~~~--------a~~fsSGMaAis-all~ll-----~~G---d~vv~~~~~Yg~t~~l~  104 (380)
T d1ibja_          46 SGNPTRDALES----LLAKLDKADR--------AFCFTSGMAALS-AVTHLI-----KNG---EEIVAGDDVYGGSDRLL  104 (380)
T ss_dssp             TCCHHHHHHHH----HHHHHHTCSE--------EEEESSHHHHHH-HHHTTS-----CTT---CEEEEESSCCHHHHHHH
T ss_pred             CCChHHHHHHH----HHHHHcCCce--------EEehhhHHHHHH-HHHHhh-----CCC---CEEEEEecccccccchh
Confidence            34566666665    5888888753        267888888875 555443     367   99999999988765555


Q ss_pred             h----hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          244 Q----YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       244 ~----~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      +    .+|+++..++.+     |.++++++|+++|++|++..|+||+..+.|+++|+++||++|++++||.++++.+.  
T Consensus       105 ~~~~~~~gi~~~~~d~~-----~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~--  177 (380)
T d1ibja_         105 SQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL--  177 (380)
T ss_dssp             HHTSGGGTCEEEEECTT-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT--
T ss_pred             hhhhccccccccccCcc-----hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccc--
Confidence            4    458999888754     78999999999999999999999999999999999999999999999999865432  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCC--CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                                ++....|+|++..|..||..|-  .-.|++..+++.+.......... .          |.-..  ...+
T Consensus       178 ----------~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~-~----------G~~l~--p~~a  234 (380)
T d1ibja_         178 ----------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS-E----------GSGLA--PFDC  234 (380)
T ss_dssp             ----------CCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHH-T----------TCBCC--HHHH
T ss_pred             ----------ccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccc-c----------CCcCC--HHHH
Confidence                      2234458999999999995332  23677777765443322211111 1          12222  2267


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      |..+  .|.+-+..+.++..++|..+++.|++.|.++-+.|
T Consensus       235 ~ll~--rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  273 (380)
T d1ibja_         235 WLCL--RGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYY  273 (380)
T ss_dssp             HHHH--HHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             HHHH--hcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEec
Confidence            7766  46688899999999999999999999998876554

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.69  E-value=4e-16  Score=150.59  Aligned_cols=233  Identities=16%  Similarity=0.169  Sum_probs=173.4

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC---CcCcHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS---AHSAYDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~---~h~s~~~a  242 (438)
                      ...+.++|..+++...++||+...+       +-..+|+.|++.+..++.+     +|   |+|+..+.   .|.+....
T Consensus        64 ~~~id~iE~la~~ra~~lF~a~~an-------Vqp~SGs~An~av~~all~-----pG---D~im~l~l~~GGHlshg~~  128 (405)
T d1kl1a_          64 CEYVDIVEELARERAKQLFGAEHAN-------VQPHSGAQANMAVYFTVLE-----HG---DTVLGMNLSHGGHLTHGSP  128 (405)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCSEEE-------CCCSSHHHHHHHHHHHHCC-----TT---CEEEEECGGGTCCGGGTCT
T ss_pred             chhHHHHHHHHHHHHHHHhCCCcce-------eeccCchHHHHHHHHHhcC-----CC---CEEEEeecccccccccCcc
Confidence            4457788988999999999998765       6788999999999999874     88   89887654   45554332


Q ss_pred             Hhhc--CcEEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          243 AQYF--NIKLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       243 ~~~~--Gi~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                      ....  ..+.+..++|+ ++.+|.+++++.+.+ +|++|++-.-.+  -...|+++++++|++.|.++++|.++-.+++.
T Consensus       129 ~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y--~r~~d~~~~reIad~vga~l~~D~aH~~GLIa  206 (405)
T d1kl1a_         129 VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY--PRIIDFAKFREIADEVGAYLMVDMAHIAGLVA  206 (405)
T ss_dssp             TSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHH
T ss_pred             ccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEeccccc--ccccChHHHHHHHhhhCCEEecchhhHhhhhh
Confidence            3222  35788888985 789999999998864 799888766554  35668999999999999999999998777663


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW  398 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~  398 (438)
                          .|. .|   --..++|++++++||.+.||.| |+++++++...+.....          -|.++|+..-..+++..
T Consensus       207 ----~g~-~~---~P~~~aDvvt~tThKtlrGPrg-g~I~~~~~~~~~i~~av----------fPg~qggp~~~~iAa~A  267 (405)
T d1kl1a_         207 ----AGL-HP---NPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAI----------FPGIQGGPLMHVIAAKA  267 (405)
T ss_dssp             ----TTS-SC---CSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHH----------TTTTCSSCCHHHHHHHH
T ss_pred             ----hhh-cC---ChhhhhhheeccccccccCCCC-ceEEecchhHHHHHhhh----------CcccccCcchhHHHHHH
Confidence                232 11   1124689999999999989886 77788754221111111          13344444445678888


Q ss_pred             HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+++......+++..+++.++|+.|.+.|.+. |+++
T Consensus       268 val~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~v  303 (405)
T d1kl1a_         268 VAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTL  303 (405)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-Ccee
Confidence            88877666778999999999999999999886 6665

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.69  E-value=9e-16  Score=150.05  Aligned_cols=236  Identities=16%  Similarity=0.051  Sum_probs=166.9

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ  244 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~  244 (438)
                      ..|.+.++|+    .+++++|.+..        +++++||.|+.++++++..     +..++++|++|..++++...++.
T Consensus        29 ~G~~v~~fE~----~~~~~~g~k~a--------i~~~Sgt~Al~~al~al~~-----~~~~~~eVi~p~~t~~a~~~ai~   91 (371)
T d2fnua1          29 QGKRSLLFEE----ALCEFLGVKHA--------LVFNSATSALLTLYRNFSE-----FSADRNEIITTPISFVATANMLL   91 (371)
T ss_dssp             SSHHHHHHHH----HHHHHHTCSEE--------EEESCHHHHHHHHHHHSSC-----CCTTSCEEEECSSSCTHHHHHHH
T ss_pred             CCHHHHHHHH----HHHHHHCcCeE--------EEEecHHHHHHHHHHHhcc-----cCCCCCeeecccccccccceeee
Confidence            3566677776    58889998742        8999999999999998652     21233689999999999999999


Q ss_pred             hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675          245 YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG  324 (438)
Q Consensus       245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g  324 (438)
                      ..|++++.++++++..++.++++++++++|++|++++.   .|...|+++|.++|+++|++++.|+|++-+...--... 
T Consensus        92 ~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~---~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~-  167 (371)
T d2fnua1          92 ESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKV-  167 (371)
T ss_dssp             HTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEET-
T ss_pred             ccCcccccccccccccccchhhhhhccchhhccccccc---cccccccccccccccccchhhccchhhccCceeccccC-
Confidence            99999999999987788889999999999999998875   89999999999999999999999999754332100000 


Q ss_pred             CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC-----CCCccC--CCCCchHHHH
Q 013675          325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV-----SPTVAG--SRPGGLIAGA  397 (438)
Q Consensus       325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~-----~~~~~g--sr~~~~ia~~  397 (438)
                             .....+.++++.+.|.+.+. +.|+++++++++.+........  |....     .....|  .|...+.|  
T Consensus       168 -------G~~g~~~~~Sf~~~K~l~~g-~GG~i~t~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~G~n~r~sel~A--  235 (371)
T d2fnua1         168 -------GGFALASVFSFHAIKPITTA-EGGAVVTNDSELHEKMKLFRSH--GMLKKDFFEGEVKSIGHNFRLNEIQS--  235 (371)
T ss_dssp             -------TSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBT--TEEESSSSCEEESSCCCBCCCCHHHH--
T ss_pred             -------Cccccccccccccccccccc-cceEEEeechhhhhhccccccc--ccccccccccccccccccccccchhh--
Confidence                   11122467788888996554 4588888877665432211100  10000     001112  34443322  


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ..++  ...+.+.+..++..++++++.+.|++.+++++
T Consensus       236 aigl--~qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~  271 (371)
T d2fnua1         236 ALGL--SQLKKAPFLMQKREEAALTYDRIFKDNPYFTP  271 (371)
T ss_dssp             HHHH--HHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEE
T ss_pred             hhhh--hhhhhccchhhhhhhhhhhhcccccccccccc
Confidence            2222  22356788888899999999999998877654

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.69  E-value=4.1e-16  Score=155.62  Aligned_cols=241  Identities=14%  Similarity=0.134  Sum_probs=161.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCC----CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGN----KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~----~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      ..|..++.+++.+++.+.+|.    ++++    |  ++|+|+|+++.++++++.+     +|   |+|+++.+.|+.+..
T Consensus        83 ~~G~~~LR~aiA~~l~~~~~~~~~~~pe~----I--~it~G~~~al~~~~~~l~~-----pG---d~Vlv~~P~y~~~~~  148 (431)
T d1m7ya_          83 YHGLPAFKKAMVDFMAEIRGNKVTFDPNH----L--VLTAGATSANETFIFCLAD-----PG---EAVLIPTPYYPGFDR  148 (431)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTTSSCCCGGG----E--EEEEHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTTHHH
T ss_pred             CcCcHHHHHHHHHHHHHHhCCCCCCCcce----E--EECCCHHHHHHHHHHHhcC-----CC---CEEEEeCCCchhHHH
Confidence            445667888888899888773    3444    7  8999999999999998863     77   999999999999998


Q ss_pred             HHhhc-CcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675          242 AAQYF-NIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD  309 (438)
Q Consensus       242 a~~~~-Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD  309 (438)
                      .+... |++++.+++++  ++.+|++++++++++      +++++++++|+||||.+.+   +++|.++|+++|+++++|
T Consensus       149 ~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~D  228 (431)
T d1m7ya_         149 DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISD  228 (431)
T ss_dssp             HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeec
Confidence            88764 79999999885  578999999988863      6889999999999999976   778899999999999999


Q ss_pred             ccccchhhh------hhhhcCCCCCCCcc--CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCcc
Q 013675          310 LCLGGFVLP------FAKKLGYPIPPFDF--SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       310 ~a~gg~~~p------f~~~~g~~~p~~~~--~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      ++|+.+...      +++-... . ..+.  ....-.++..+..|... .+..+|+++..++.+........ .+..   
T Consensus       229 e~Y~~~~~~~~~~~s~~~~~~~-~-~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~-~~~~---  302 (431)
T d1m7ya_         229 EIYSGTAFSSPSFISVMEVLKD-R-NCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SFGL---  302 (431)
T ss_dssp             CTTGGGCCSSSCCCCHHHHTTT-T-TCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHG-GGSC---
T ss_pred             ccccccccCCCCCCCHHHHhhh-c-ccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHh-cccc---
Confidence            999865431      0000000 0 0000  00112466778899854 34568988776544332211111 1100   


Q ss_pred             CCCCccCCCCCchHHHHHHHHH--HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          381 VSPTVAGSRPGGLIAGAWAALM--SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       381 ~~~~~~gsr~~~~ia~~~aal~--~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                              -+......+.+.+.  ....+.+.+..++..+..+.+.+.|++ +|+++
T Consensus       303 --------~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~~  350 (431)
T d1m7ya_         303 --------VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SGISC  350 (431)
T ss_dssp             --------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEE
T ss_pred             --------ccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc-CCcEE
Confidence                    00111111112221  122345666667777888888888876 35543

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.3e-15  Score=148.20  Aligned_cols=223  Identities=17%  Similarity=0.128  Sum_probs=167.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----  239 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----  239 (438)
                      ...|....+|+    .++++-|...        .+.+++|..|+..++.++.     ++|   ++|+++...|...    
T Consensus        47 ~~nPt~~~le~----~la~LEgg~~--------a~~~sSGMaAi~~~l~~l~-----~~g---d~vv~~~~~yg~t~~~~  106 (384)
T d1cs1a_          47 RGNPTRDVVQR----ALAELEGGAG--------AVLTNTGMSAIHLVTTVFL-----KPG---DLLVAPHDCYGGSYRLF  106 (384)
T ss_dssp             TCCHHHHHHHH----HHHHHHTCSE--------EEEESSHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHH
T ss_pred             CCCHHHHHHHH----HHHHHhCCCc--------eEEecChHHHHHHHHhhcc-----ccc---ceecccccccchhhhhh
Confidence            44577776766    5888888753        2789999999999988876     377   8999999888664    


Q ss_pred             HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      .+.+..+|+++..++..     |.++++++++++|++|++..|+||+..+.||++|+++||++|++++||.+++..+.  
T Consensus       107 ~~~~~~~g~~~~~~d~~-----d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~--  179 (384)
T d1cs1a_         107 DSLAKRGCYRVLFVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL--  179 (384)
T ss_dssp             HHHHTTTSCEEEEECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT--
T ss_pred             hhhhcccccccccccCC-----CHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCccc--
Confidence            44555568888887653     78999999999999999999999999999999999999999999999999864332  


Q ss_pred             hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                                ++....|+|++.-|..||..|-.  -.|+++.+++............ .|          ...+  ...+
T Consensus       180 ----------~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~-~G----------~~~~--p~~a  236 (384)
T d1cs1a_         180 ----------QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN-IG----------VTGG--AFDS  236 (384)
T ss_dssp             ----------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH-HT----------CBCC--HHHH
T ss_pred             ----------ccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhh-hh----------hccc--cccH
Confidence                      22344589999999999943322  2576666665443222111111 11          1112  2267


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      |..+  .|.+-+.-+.++..++|..+++.|++.|.++-+.|
T Consensus       237 ~ll~--rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  275 (384)
T d1cs1a_         237 YLLL--RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYH  275 (384)
T ss_dssp             HHHH--HHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEEC
T ss_pred             HHHh--hccchhHHHHHHHHHHHHHHHHhcccCCceeeeee
Confidence            7766  46678899999999999999999999998865544

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.67  E-value=8.7e-16  Score=152.56  Aligned_cols=242  Identities=12%  Similarity=0.050  Sum_probs=167.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      .|....|..++.+.+.+++.+.+|.+... ..+|  ++|+|+++|+..+++++.+     +|   ++|+++.+.|+.+..
T Consensus        61 ~Y~~~~G~~~lReaiA~~~~~~~g~~~~p-~~~I--~it~G~~~al~~~~~~l~~-----~g---d~vlv~~P~y~~~~~  129 (418)
T d2r5ea1          61 QYTRGFGHPRLVQALSKLYSQLVDRTINP-MTEV--LVTVGAYEALYATIQGHVD-----EG---DEVIIIEPFFDCYEP  129 (418)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHTSCCCT-TTSE--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTTHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCc-cceE--EEcCCCchhhhhhhhhccc-----cc---cceeccccccchhhH
Confidence            45566778888999999999999876321 0136  9999999999999999874     77   999999999999999


Q ss_pred             HHhhcCcEEEEeeCCCC----------CccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEE
Q 013675          242 AAQYFNIKLWRVPVDKE----------FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHV  308 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~----------~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhV  308 (438)
                      .+...|.+++.|+++++          +..+.++++++...+++++++++|+||||.+.+   +++|+++|++|+++++.
T Consensus       130 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~  209 (418)
T d2r5ea1         130 MVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVS  209 (418)
T ss_dssp             HHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeec
Confidence            99999999999998642          468899999999999999999999999999977   56788999999999999


Q ss_pred             eccccchhhhhhhhcCCCCCCC-cc-CCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCc
Q 013675          309 DLCLGGFVLPFAKKLGYPIPPF-DF-SVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTV  385 (438)
Q Consensus       309 D~a~gg~~~pf~~~~g~~~p~~-~~-~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~  385 (438)
                      |++|..+...   ...  .+.+ .. ....-..+..+..|.. +.+..+|+++..++ +.............+       
T Consensus       210 De~y~~~~~~---~~~--~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~-~i~~~~~~~~~~~~~-------  276 (418)
T d2r5ea1         210 DEVYEHMVFE---PFE--HIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEA-LLKNLQMVHQNCVYT-------  276 (418)
T ss_dssp             ECTTTTCBCT---TCC--CCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHH-HHHHHHHHHTTTTCS-------
T ss_pred             ccchhhhccC---CCc--cccccccccccceeeeeecCCccccCCCcccccccccch-hhhhhhhcccccccc-------
Confidence            9999765431   100  1111 11 1112245556777874 35577999766543 322211111000000       


Q ss_pred             cCCCCCchHHHHHHHHHHH---------cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          386 AGSRPGGLIAGAWAALMSL---------GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       386 ~gsr~~~~ia~~~aal~~~---------g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                          ....  .+.++...+         .++.+++..++....++++.+.|+++ |++
T Consensus       277 ----~~~~--~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~  327 (418)
T d2r5ea1         277 ----CATP--IQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMN  327 (418)
T ss_dssp             ----CCHH--HHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             ----cccc--hhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCc
Confidence                0011  122222111         12345677778888889999999886 544

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=4e-15  Score=145.37  Aligned_cols=197  Identities=13%  Similarity=0.101  Sum_probs=149.3

Q ss_pred             HHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCe
Q 013675          149 NEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPE  228 (438)
Q Consensus       149 ~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~  228 (438)
                      .+.+...+......|....|..++.+.+.+++.+..|.+.+.  .++  ++|+|+++|+..++.++.+     +|   ++
T Consensus        47 ~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~--~~i--~~t~G~~~al~~~~~~l~~-----~g---d~  114 (375)
T d1o4sa_          47 VEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP--DQV--VVTNGAKQALFNAFMALLD-----PG---DE  114 (375)
T ss_dssp             HHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG--GGE--EEESHHHHHHHHHHHHHCC-----TT---CE
T ss_pred             HHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhcccccccc--ccc--cccCcHHHHHHHHHHHHhC-----CC---CE
Confidence            344444444444556666778889999999999888875432  125  8999999999999999874     77   89


Q ss_pred             EEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcC
Q 013675          229 MIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHG  303 (438)
Q Consensus       229 Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~  303 (438)
                      |+++.+.|+.+...+...|.....+++++  ++.+|.+.++....++++++++++|+||||.+.+   +++|.++|++|+
T Consensus       115 vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~  194 (375)
T d1o4sa_         115 VIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRN  194 (375)
T ss_dssp             EEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             EEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcC
Confidence            99999999999999999999999988875  7789999999999999999999999999999966   678888899999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCc-cCCCCccEEEeCCCCCCC-CCCCcEEEEEecc
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFD-FSVQGVTSISVDVHKYGL-APKGTSVVLYRNR  362 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~-~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~  362 (438)
                      ++++.|++|+.+...     +...+... ....+-.++..+..|.+. ++..+|++...++
T Consensus       195 ~~ii~De~y~~~~~~-----~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~  250 (375)
T d1o4sa_         195 FYIISDEVYDSLVYT-----DEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK  250 (375)
T ss_dssp             CEEEEECTTTTSBCS-----SCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred             CceehHhhhcccccc-----ccccccccccCCCCCEEEEeechhhccCCcccccccccccc
Confidence            999999998744321     00000001 112234577888999743 5577999776544

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.66  E-value=2.8e-15  Score=145.37  Aligned_cols=224  Identities=13%  Similarity=0.109  Sum_probs=155.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP  254 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~  254 (438)
                      ++++++++.+|.++++    |  ++|+|+++++.+++.+.       .|   +.+++..+.+..+.......+.+++.+|
T Consensus        61 ~Lr~aia~~~~v~~~~----I--~~~~g~~~~~~~~~~~~-------~~---~~~~v~~p~~~~~~~~~~~~~~~~~~v~  124 (355)
T d1lc5a_          61 HLHQALARHHQVPASW----I--LAGNGETESIFTVASGL-------KP---RRAMIVTPGFAEYGRALAQSGCEIRRWS  124 (355)
T ss_dssp             HHHHHHHHHHTSCGGG----E--EEESSHHHHHHHHHHHH-------CC---SEEEEEESCCTHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHhCCCHHH----E--EecccHHHHHHHHHhhh-------cc---ccccccCCccceeccccccccccceeee
Confidence            4566788889998876    6  78888888877766543       33   5677777888888888889999999999


Q ss_pred             CCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          255 VDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       255 ~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      ++. ++..+.++++++++++++++++++|+||||.+.+   +.+|+++|++|++++++|.+|..+...   ...  . ..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~---~~~--~-~~  198 (355)
T d1lc5a_         125 LREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH---ETG--F-IP  198 (355)
T ss_dssp             CCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT---CCC--S-GG
T ss_pred             eeccCCccceeeeeeccccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeee---ccc--c-cc
Confidence            874 3334446778888999999999999999999977   668888899999999999999765431   000  0 11


Q ss_pred             ccCCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cHHH
Q 013675          331 DFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~~g  408 (438)
                      ......-.++..++.|.. ..+..+|+++..++............|...               ..+..++...+ ..+.
T Consensus       199 ~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~~~a~~~l~~~~~  263 (355)
T d1lc5a_         199 ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVN---------------ALAALAGEVALQDSAW  263 (355)
T ss_dssp             GCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSC---------------HHHHHHHHHGGGCHHH
T ss_pred             cccccccceeecccccccccccccccceeccchhhhHHHHhhcCCcccc---------------ccccccccccccccch
Confidence            112223357788899983 355668998776554433221111111110               11333333333 3456


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      +.+..++..+..+++.+.|.+++++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~  290 (355)
T d1lc5a_         264 QQATWHWLREEGARFYQALCQLPLLTV  290 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCcEE
Confidence            788888889999999999999888764

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.1e-15  Score=146.23  Aligned_cols=233  Identities=17%  Similarity=0.190  Sum_probs=173.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC---cHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS---AYDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~---s~~~a  242 (438)
                      ...+.++|.-+++...++||+...+       +-..+|+.|++.+..++.     ++|   |.|+..+..|.   +.-..
T Consensus        67 ~~~iD~iE~la~~ra~~lF~a~~an-------Vqp~SGs~AN~av~~All-----~pG---D~Il~l~l~~GGHlshg~~  131 (416)
T d1dfoa_          67 CEYVDIVEQLAIDRAKELFGADYAN-------VQPHSGSQANFAVYTALL-----EPG---DTVLGMNLAHGGHLTHGSP  131 (416)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHC-----CTT---CEEEEECTTTTCCGGGTCT
T ss_pred             ChhHHHHHHHHHHHHHHHhCCCcce-------eecccCccHHHHHHHHhc-----CCC---Ceeeecccccccccccccc
Confidence            4456788888899999999998765       678899999999999987     388   99987666543   33333


Q ss_pred             HhhcC--cEEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675          243 AQYFN--IKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF  319 (438)
Q Consensus       243 ~~~~G--i~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf  319 (438)
                      +...|  .+.+..++++++.+|.+++++... .+|++|++..-.  +....|++++.++|++.|.++++|.++-.+++. 
T Consensus       132 ~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa-  208 (416)
T d1dfoa_         132 VNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSA--YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVA-  208 (416)
T ss_dssp             TSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHH-
T ss_pred             ccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEecccc--cccccCHHHHHHHHHhcCceEEcchhhhhccee-
Confidence            33333  477777888888999999999876 489998877544  557889999999999999999999998777663 


Q ss_pred             hhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc--cccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675          320 AKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR--EIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       320 ~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~--~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                         .|. .| |++    .+|+++.++||.+.||.| |++++++.  ++.+..-..         .-|.++|...-..+++
T Consensus       209 ---~g~-~~sP~~----~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~a---------vfPg~qggp~~~~iaa  270 (416)
T d1dfoa_         209 ---AGV-YPNPVP----HAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNSA---------VFPGGQGGPLMHVIAG  270 (416)
T ss_dssp             ---HTS-SCCCTT----TSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHHH---------HTTTTCSSCCHHHHHH
T ss_pred             ---ccc-cCCccc----ccceeeeehhhcccCCCc-eEEEeccchHhHHHHHHhh---------hCcccccCccHHHHHH
Confidence               232 11 332    369999999999888886 88888743  221110000         1133344444455788


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ...+++......+++..++..++|+.|++.|.+. |+++
T Consensus       271 ~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~i  308 (416)
T d1dfoa_         271 KAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKV  308 (416)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-Cccc
Confidence            8888887667788999999999999999999886 7665

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.66  E-value=1.6e-15  Score=145.15  Aligned_cols=216  Identities=17%  Similarity=0.117  Sum_probs=163.1

Q ss_pred             HHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcEEE
Q 013675          176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKLW  251 (438)
Q Consensus       176 ~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v~  251 (438)
                      +.+.++.+-|...        ++.+++|..|+..++.++.     ++|   ++|+++...|..    +.+..+.+|+++.
T Consensus         3 LE~~la~Leg~~~--------a~~~sSGMaAi~~~l~~ll-----~~G---d~iv~~~~~Yg~t~~~~~~~l~~~gi~~~   66 (331)
T d1pffa_           3 LEGKIAKLEHAEA--------CAATASGMGAIAASVWTFL-----KAG---DHLISDDCLYGCTHALFEHQLRKFGVEVD   66 (331)
T ss_dssp             HHHHHHHHHTCSE--------EEEESSHHHHHHHHHHHHC-----CTT---CEEEEESCCCHHHHHHHHTHHHHTTCEEE
T ss_pred             HHHHHHHHhCCCe--------EEEECCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchHHHHHHHHHHHhcCeEEE
Confidence            3456888888753        3788999999999988876     378   999999988866    4455667799999


Q ss_pred             EeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHH-HHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675          252 RVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA-LSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF  330 (438)
Q Consensus       252 ~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la-~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~  330 (438)
                      .++.+     |++.++++++++|++|++..|+||+..+.|++++.+++ +++|++++||.+++.++.            +
T Consensus        67 ~~d~~-----d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~------------~  129 (331)
T d1pffa_          67 FIDMA-----VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL------------T  129 (331)
T ss_dssp             EECTT-----STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH------------C
T ss_pred             Eeccc-----chhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccc------------c
Confidence            98865     88999999999999999999999999999999999985 678999999999876554            2


Q ss_pred             ccCCCCccEEEeCCCCCCCCC--CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675          331 DFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG  408 (438)
Q Consensus       331 ~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g  408 (438)
                      +....|+|++..|..||..|-  .-.|+++.+++...+......          ....|...+..  .+|..+  .|.+-
T Consensus       130 ~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~----------~~~~G~~l~p~--~a~ll~--rgl~T  195 (331)
T d1pffa_         130 NPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGI----------KDITGAIISPH--DAWLIT--RGTLT  195 (331)
T ss_dssp             CGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCC----------CCCCCCCCCHH--HHHHHH--HHHHH
T ss_pred             cccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhh----------hhccCCCCCHH--HHHHHH--HHHHH
Confidence            233457999999999995332  225666665443322111111          11123333333  677776  46788


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +..+.++..++|..+++.|++.|.++-+.|
T Consensus       196 l~~Rm~~~~~nA~~lA~~L~~hp~V~~V~y  225 (331)
T d1pffa_         196 LDMRVKRAAENAQKVAEFLHEHKAVKKVYY  225 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCCCEEC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhCCcEEeecc
Confidence            999999999999999999999999876554

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.65  E-value=6.8e-15  Score=143.76  Aligned_cols=241  Identities=14%  Similarity=0.046  Sum_probs=160.2

Q ss_pred             HHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675          146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT  225 (438)
Q Consensus       146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~  225 (438)
                      +.+.+.+.+...++     ..|.+.++|++    +++++|...        .+++++||.|+.+|++++.-    ++|  
T Consensus         5 ~~~~~~l~~~~~~~-----~G~~~~~fE~~----~~~~~~~~~--------~~~~~SgT~Al~lal~~l~~----~~g--   61 (374)
T d1o69a_           5 KYIEEVFKSNYIAP-----LGEFVNRFEQS----VKDYSKSEN--------ALALNSATAALHLALRVAGV----KQD--   61 (374)
T ss_dssp             HHHHHHHHHTTTSC-----TTHHHHHHHHH----HHHHHCCSE--------EEEESCHHHHHHHHHHHTTC----CTT--
T ss_pred             HHHHHHHhcCCcCC-----CCHHHHHHHHH----HHHHHCcCe--------EEEeCCHHHHHHHHHHHcCC----CCc--
Confidence            45556654432221     24567777764    788888874        28999999999999998632    356  


Q ss_pred             CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCC-ccCHH--HHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc
Q 013675          226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEF-RADVK--AIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH  302 (438)
Q Consensus       226 ~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~-~~d~~--~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~  302 (438)
                       |+|++|..++++...++...|++++.++++++. .++.+  +.+..++++|++|++++.   .|...|+++|.++|+++
T Consensus        62 -deVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~  137 (374)
T d1o69a_          62 -DIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKEN  137 (374)
T ss_dssp             -CEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHT
T ss_pred             -CEEEeCCcchHhhHHHHhhccceeEecccccccccccccccccchhccccccccccccc---ccchhhhHHHHHHhhcc
Confidence             899999999999999999999999999998743 33333  344667788999998887   89999999999999999


Q ss_pred             CCeEEEeccccchhhhhhhhcCCCCCCCccCCC----CccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc-ccCC
Q 013675          303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ----GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSG  377 (438)
Q Consensus       303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~----gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g  377 (438)
                      |++|+.|+|++-+..            ++-...    .+.++|+.+.|.+.+ .|.|+++++++++......... .+..
T Consensus       138 ~i~vIED~a~a~g~~------------~~~~~~G~~gd~~~fSf~~~K~l~t-geGG~i~tnn~~~~~~~~~~~~~g~~~  204 (374)
T d1o69a_         138 DIVLIEDAAEALGSF------------YKNKALGTFGEFGVYSYNGNKIITT-SGGGMLIGKNKEKIEKARFYSTQAREN  204 (374)
T ss_dssp             TCEEEEECTTCTTCE------------ETTEETTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTCCCS
T ss_pred             Ccchhhhhhhhhcce------------ECCeecCCCCceEEEeccCcccccc-ccceeehhhhHHHHHhhcccccccccc
Confidence            999999999753221            111111    134555555688544 4558888888775543221110 0000


Q ss_pred             CccCCCCccC--CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          378 GLYVSPTVAG--SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       378 ~~~~~~~~~g--sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .........|  .|....    .+++-....+.+.+..++..++++++.+.|.+.
T Consensus       205 ~~~~~~~~~G~N~rm~ei----~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~  255 (374)
T d1o69a_         205 CLHYEHLDYGYNYRLSNV----LGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY  255 (374)
T ss_dssp             SSSCCCSSCCCBCBCCHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccccccCCccccccch----hhhhhHHHHhhhhhhcchhHHHHHHHHhhcccc
Confidence            0000011122  233322    333333334567788888889999999999765

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=5.6e-15  Score=144.84  Aligned_cols=257  Identities=14%  Similarity=0.064  Sum_probs=174.5

Q ss_pred             HHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675          148 INEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP  227 (438)
Q Consensus       148 ~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~  227 (438)
                      +.+++...+..+...|....|..++.+.+.+++.+.+|.+... ..++  ++|+|+++++.++++++.+     +|   +
T Consensus        44 i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~-~~~I--~vt~G~~~al~~~~~~l~~-----~g---d  112 (382)
T d1u08a_          44 LQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDA-DSDI--TVTAGATEALYAAITALVR-----NG---D  112 (382)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCT-TTTE--EEESSHHHHHHHHHHHHCC-----TT---C
T ss_pred             HHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCC-CceE--EeccchHHHHHHHHhhccc-----cc---c
Confidence            3444444444445567778888899999999999999876421 0125  8999999999999998874     77   8


Q ss_pred             eEEecCCCcCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcC
Q 013675          228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHG  303 (438)
Q Consensus       228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~  303 (438)
                      .|+++.+.++.+...+...|.++..++.++ ++.+|+++++++++++++++++++||||||.+.+   +++|.++|++++
T Consensus       113 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~  192 (382)
T d1u08a_         113 EVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHE  192 (382)
T ss_dssp             EEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSC
T ss_pred             eEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhccCccEEEECCCCcccccccccccchhhhhhhcccc
Confidence            999999999999999999999988888876 7789999999999999999999999999999977   567778888999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccC-C---CCccEEEeCCCCC-CCCCCCcEEEEEecccccccchhcccccCCC
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFS-V---QGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQFVAVTEWSGG  378 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~-~---~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~  378 (438)
                      ++++.|..|.-+...     +. . +.... .   ..-.++..++.|. +..+..+|+++..++.............   
T Consensus       193 ~~ii~d~~~~~~~~~-----~~-~-~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~~~~---  262 (382)
T d1u08a_         193 IFVISDEVYEHINFS-----QQ-G-HASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLT---  262 (382)
T ss_dssp             CEEEEECTTTTCBCC-----SS-C-CCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHT---
T ss_pred             ceeeeecchhhcccc-----cc-c-cccccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHhhhcccc---
Confidence            999999998643321     00 0 00000 0   0113556666665 4455779997765432222111100000   


Q ss_pred             ccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          379 LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       379 ~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                              .+-+.....++..++. .+.+.+.+..++..+..+.+.+.++.. ++++
T Consensus       263 --------~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~  309 (382)
T d1u08a_         263 --------FSVNTPAQLALADMLR-AEPEHYLALPDFYRQKRDILVNALNES-RLEI  309 (382)
T ss_dssp             --------SSCCHHHHHHHHHHHH-HCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEE
T ss_pred             --------cccccccccccccccc-cchHHHHHHHHHHHhhhhhhhhhhccC-CcEE
Confidence                    0011111122333332 345667777788888888888887653 5543

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=9.5e-15  Score=143.42  Aligned_cols=237  Identities=17%  Similarity=0.138  Sum_probs=166.1

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-  240 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-  240 (438)
                      .-...|....+|+    .++.+-|...        ++.+++|..|+..++.++..     +|   ++|+++...|.... 
T Consensus        53 sR~~nPT~~~LE~----~la~LE~~~~--------a~~~~SGmaAi~~~~~~l~~-----~g---d~il~~~~~Yg~t~~  112 (421)
T d2ctza1          53 SRIMNPTVDVLEK----RLAALEGGKA--------ALATASGHAAQFLALTTLAQ-----AG---DNIVSTPNLYGGTFN  112 (421)
T ss_dssp             BTTBCHHHHHHHH----HHHHHHTCSE--------EEEESSHHHHHHHHHHHHCC-----TT---CEEEECSCCCHHHHH
T ss_pred             cCCCCHHHHHHHH----HHHHHhCCCe--------EEEecChHHHHHHHHHhhcc-----cc---cceeecCCcCCchhH
Confidence            3345676666666    5888887753        37889999999999888763     67   99999999986644 


Q ss_pred             ---HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc-chh
Q 013675          241 ---KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG-GFV  316 (438)
Q Consensus       241 ---~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g-g~~  316 (438)
                         +.+..+|+++..++.+    -+.+..++.++++|++|++..|+||+..+.||++|+++||++|++++||.+++ +.+
T Consensus       113 l~~~~~~~~gi~~~~~d~~----~~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~  188 (421)
T d2ctza1         113 QFKVTLKRLGIEVRFTSRE----ERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGY  188 (421)
T ss_dssp             HHHTHHHHTTCEEEECCTT----CCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGT
T ss_pred             HHHHHHhhccccceecccc----cCcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccce
Confidence               4555679999888653    24567778889999999999999999999999999999999999999999986 222


Q ss_pred             hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC--CcEEEEEeccccccc---chhcccc--cCCCcc----CCC--
Q 013675          317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKH---QFVAVTE--WSGGLY----VSP--  383 (438)
Q Consensus       317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~---~~~~~~~--~~g~~~----~~~--  383 (438)
                      .            ++....|+|++.-|..||+.|-.  -.|+++.+++.....   .....+.  +.+..+    ...  
T Consensus       189 ~------------~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  256 (421)
T d2ctza1         189 L------------LRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAF  256 (421)
T ss_dssp             S------------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHH
T ss_pred             e------------ccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHH
Confidence            1            22345689999999999954332  257666655432211   0000000  000000    000  


Q ss_pred             ---------CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          384 ---------TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       384 ---------~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                               ...|.-....  .+|..+  .|.+-+.-+.++..++|..+++.|++.|.++-++|
T Consensus       257 ~~~~~~~~~~~~G~~~sP~--~a~l~~--rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~y  316 (421)
T d2ctza1         257 IVKARVDGLRDQGQALGPF--EAWVVL--LGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNY  316 (421)
T ss_dssp             HHHHHHTHHHHHCCCCCHH--HHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             HHHHHHHHHHhccCCCCHH--HHHHHh--cCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEec
Confidence                     0012222222  677666  56688899999999999999999999998865544

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.64  E-value=2.1e-15  Score=151.25  Aligned_cols=235  Identities=14%  Similarity=0.036  Sum_probs=151.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      |...|.+.++|+.    +++++|.+.        +++|++||.|+.++++++.     ++|   ++|+.... ..+....
T Consensus        71 Y~~dpt~~~lE~~----~a~l~G~e~--------al~~~SGt~An~~a~~~l~-----~~G---d~Vi~~~~-f~~~~~~  129 (456)
T d1c7ga_          71 YAGSENFYHLEKT----VKELFGFKH--------IVPTHQGRGAENLLSQLAI-----KPG---QYVAGNMY-FTTTRFH  129 (456)
T ss_dssp             SSSCHHHHHHHHH----HHHHHCCSE--------EEEESSHHHHHHHHHHHHC-----CTT---EEEEESSC-CHHHHHH
T ss_pred             ccCCchHHHHHHH----HHHHhCCCe--------EEECCCHHHHHHHHHHHhc-----CCC---CeEecCcc-hHHHHHH
Confidence            5567888888874    788999974        2899999999999999876     377   77776554 2333344


Q ss_pred             HhhcCcEEEEeeCC----------CCCccCHHHHHHhhccC----cEEEEEecCCCCCc----cccCHHHHHHHHHHcCC
Q 013675          243 AQYFNIKLWRVPVD----------KEFRADVKAIKKYINRN----TVLIVGSAPGFPHG----IIDPIQELGELALSHGT  304 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~----------~~~~~d~~~Le~~I~~~----t~~vv~~~~~~~tG----~iddi~~I~~la~~~~i  304 (438)
                      ....|...+.+..+          .++.+|+++|+++|+++    +.++++..++|+.|    .++++++|.++|++||+
T Consensus       130 i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~  209 (456)
T d1c7ga_         130 QEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGI  209 (456)
T ss_dssp             HHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCC
Confidence            56668877766542          25789999999999753    56889999988876    33568899999999999


Q ss_pred             eEEEeccccchhhhhhhhcCCCCCCCccC---------CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccccc
Q 013675          305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFS---------VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW  375 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~---------~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~  375 (438)
                      ++|+|+|.......|......   .+...         ...+|+++++.||.+.+|.| |+++.+++++.+.........
T Consensus       210 ~~~~D~a~~~~~a~~~~~~~~---~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~r~~~~~~  285 (456)
T d1c7ga_         210 KIFYDATRCVENAYFIKEQEA---GYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAKELVVVY  285 (456)
T ss_dssp             CEEEECTTHHHHHHHHHHHST---TCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEEcchhhcchhhhccccc---ccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHHHHhcccc
Confidence            999999975443333222111   11100         12369999999999777666 888888766543221111111


Q ss_pred             CCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          376 SGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       376 ~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .+     ....|...+..+.++...+.....   .+..++..+.+++|.++|.+.
T Consensus       286 ~g-----~~~~g~~~~~~~~a~a~~l~e~~~---~~~l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         286 EG-----MPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             TC-----CTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHT
T ss_pred             CC-----CcccchhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhc
Confidence            11     111222333333344444433211   233455566778888888775

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=5.4e-15  Score=143.40  Aligned_cols=222  Identities=17%  Similarity=0.148  Sum_probs=154.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC-eEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP-EMIIPVSAHSAYDKAAQYFNIKLWRV  253 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~-~Viv~~~~h~s~~~a~~~~Gi~v~~v  253 (438)
                      ++++++++.+|.++++    |  ++|+|+++++.++++++.+     +|   + +|+++.+.|+.+...++..|.+++.+
T Consensus        60 ~Lr~~ia~~~gv~pe~----I--~it~Gs~eai~~~~~~~~~-----pg---d~~Vl~~~P~y~~~~~~~~~~g~~v~~~  125 (354)
T d1fg7a_          60 AVIENYAQYAGVKPEQ----V--LVSRGADEGIELLIRAFCE-----PG---KDAILYCPPTYGMYSVSAETIGVECRTV  125 (354)
T ss_dssp             HHHHHHHHHHTSCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---TCEEEECSSSCTHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHHHhCCChHH----e--eeccCchHHHHHHHHHhhc-----cc---cccccccccccccchhhhhccCceeecc
Confidence            5777899999999886    7  9999999999999998863     66   6 58889999999999999999999999


Q ss_pred             eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHH--HHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675          254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA--LSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD  331 (438)
Q Consensus       254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la--~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~  331 (438)
                      +.++++.+|+++++++++ +++++++++||||||.+.+-+++..++  .+++.++++|.++..+...    ..  . +..
T Consensus       126 ~~~~~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~----~~--~-~~~  197 (354)
T d1fg7a_         126 PTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQ----AS--L-AGW  197 (354)
T ss_dssp             CCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGG----GC--S-GGG
T ss_pred             ccccccccchhhhhhccc-ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccc----cc--c-chh
Confidence            999899999999999874 799999999999999998755443333  2467888888887654421    00  1 111


Q ss_pred             cCCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc---HH
Q 013675          332 FSVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG---QE  407 (438)
Q Consensus       332 ~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g---~~  407 (438)
                      .....-.++..+++|.. .++..+|+++.. +++.+........|..+             ..  ++..+...+.   ..
T Consensus       198 ~~~~~~~iv~~S~SK~~~laGlRiGy~i~~-~~~i~~l~~~~~~~~~~-------------~~--~~~~a~~~~~~~~~~  261 (354)
T d1fg7a_         198 LAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVIAPYPLS-------------TP--VADIAAQALSPQGIV  261 (354)
T ss_dssp             TTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHSCSSCSC-------------HH--HHHHHHHHTSHHHHH
T ss_pred             hcccccceEEeCCccccCCCcccccccccc-chhhhhhhhhcCccchh-------------hH--HHHHHHHHHhhhccc
Confidence            12222346667899984 355679997654 44443322222222111             11  1112222222   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          408 GYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       408 g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ...+..++..+..+++.+.+.+++++.
T Consensus       262 ~~~~~~~~~~~~r~~l~~~l~~~~~~~  288 (354)
T d1fg7a_         262 AMRERVAQIIAEREYLIAALKEIPCVE  288 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred             cccccchhhhhHHHHHHHHHHhCCCcc
Confidence            345566677788889999999887753

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3e-15  Score=148.61  Aligned_cols=262  Identities=15%  Similarity=0.075  Sum_probs=174.7

Q ss_pred             HHHHHHHHHhhccCC--CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          146 SLINEACSMFAHTNP--LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       146 ~~~~~~~~~~~~~n~--~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      +.+.+++...+....  .+|...+|..++.+.+.+++.+.+|.+.+. ..+|  ++|+|+++|+.++++++.+     +|
T Consensus        41 ~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~-~~~I--~it~G~~~al~~~~~~l~~-----~g  112 (418)
T d1w7la_          41 DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP-LRNV--LVTVGGYGALFTAFQALVD-----EG  112 (418)
T ss_dssp             HHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH-HHHE--EEESHHHHHHHHHHHHHCC-----TT
T ss_pred             HHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCc-ccce--eeccCcHHHHHHHHHhhcc-----CC
Confidence            344555555444322  246667788889999999999998886320 0026  8999999999999998874     67


Q ss_pred             CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC------------CCccCHHHHHHhhccCcEEEEEecCCCCCccccC
Q 013675          224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK------------EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP  291 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~------------~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd  291 (438)
                         +.|+++.+.++.+...+...|.+++.++.++            ++.+|.+++...++++++++++++|+||||.+.+
T Consensus       113 ---~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s  189 (418)
T d1w7la_         113 ---DEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFS  189 (418)
T ss_dssp             ---CEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             ---ceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccccccceeccCcCCccccccc
Confidence               8999999999999999999999998887642            4578999999999999999999999999999965


Q ss_pred             ---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCC-CccEEEeCCCCC-CCCCCCcEEEEEecccccc
Q 013675          292 ---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ-GVTSISVDVHKY-GLAPKGTSVVLYRNREIRK  366 (438)
Q Consensus       292 ---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~-gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~  366 (438)
                         +++|.++|++++++++.|++|..+...   .... .+...+... .-.++..++.|. +..+..+|+++..+ ++..
T Consensus       190 ~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~---~~~~-~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~-~~~~  264 (418)
T d1w7la_         190 REELELVASLCQQHDVVCITDEVYQWMVYD---GHQH-ISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD-HIMK  264 (418)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCT---TCCC-CCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCH-HHHH
T ss_pred             HHHHHHHHHHHHhcCCCchhhhhhHHhhcC---CCCC-CCHHHccccccccceecccCccccCCCCcccccccch-hhhh
Confidence               678999999999999999999766531   1000 111111111 125667788886 34557799987654 3322


Q ss_pred             cchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH------cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675          367 HQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL------GQEGYLENTKAIMEVSESIQKGLVLFPMFL  434 (438)
Q Consensus       367 ~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~------g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  434 (438)
                      ...........          .-+.....++..++..-      ..+.+....++..+.++.+.+.|+++ |++
T Consensus       265 ~l~~~~~~~~~----------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~  327 (418)
T d1w7la_         265 HLRTVHQNSVF----------HCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLK  327 (418)
T ss_dssp             HHHHHHHTTTS----------CCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             hhccccccccc----------cccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-CCc
Confidence            21111100000          00000011122222111      12345666777788888899999876 544

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=2.1e-15  Score=149.69  Aligned_cols=186  Identities=15%  Similarity=0.126  Sum_probs=141.2

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675          161 LHLDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS  237 (438)
Q Consensus       161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~  237 (438)
                      +.|....|..++.+.+.+++.+.+|.+   +++    |  ++|+|+++++.+++.++.+     +|   ++|+++.+.|+
T Consensus        74 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~----I--~it~G~~~al~~~~~~~~~-----~G---d~Vlv~~P~y~  139 (420)
T d1vp4a_          74 LQYSTTEGDPVLKQQILKLLERMYGITGLDEDN----L--IFTVGSQQALDLIGKLFLD-----DE---SYCVLDDPAYL  139 (420)
T ss_dssp             TSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGG----E--EEEEHHHHHHHHHHHHHCC-----TT---CEEEEEESCCH
T ss_pred             cCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHH----e--EeccchhhhHHHHHHhhhc-----cc---ccccccccccc
Confidence            345566777889999999999988864   333    6  8999999999999998763     77   99999999999


Q ss_pred             cHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc---------cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCe
Q 013675          238 AYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN---------RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTC  305 (438)
Q Consensus       238 s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~---------~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~  305 (438)
                      .+...++..|++++.+|.+++ .+|++.++..+.         +.+.++++++|+||||.+.+   +++|+++|++++++
T Consensus       140 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~  218 (420)
T d1vp4a_         140 GAINAFRQYLANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLF  218 (420)
T ss_dssp             HHHHHHHTTTCEEEEEEEETT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred             chhHHHHHHhhhccccccccc-ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhccccc
Confidence            999999999999999998764 478887766543         23557778899999999865   67999999999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccc
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRK  366 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~  366 (438)
                      +++|++|..+...   .... .+.......+..++..++.|++..+..+|+++. ++++.+
T Consensus       219 ii~De~y~~l~~~---~~~~-~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~-~~~~i~  274 (420)
T d1vp4a_         219 IVEDDPYGALRYE---GETV-DPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAG-SKEFIR  274 (420)
T ss_dssp             EEEECSSTTCBCS---SCCC-CCHHHHHCTTTEEEEEESTTTTCGGGCEEEEEC-CHHHHH
T ss_pred             ccccchhhhcccc---Cccc-ccccccccccceeEEeccccccccccccccccc-cchhhh
Confidence            9999999765431   0000 111222334556777788999776678999765 444443

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.63  E-value=8.7e-15  Score=142.99  Aligned_cols=224  Identities=18%  Similarity=0.131  Sum_probs=166.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----  239 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----  239 (438)
                      ...|....+|+    .++++-|...        .+.+++|..|+..++.++.     ++|   ++|+++...|...    
T Consensus        56 ~~nPT~~~le~----~la~LEg~~~--------a~~~sSGmaAi~~~~l~l~-----~~g---d~vv~~~~~yg~t~~~~  115 (394)
T d1e5ea_          56 LGNPTVSNLEG----KIAFLEKTEA--------CVATSSGMGAIAATVLTIL-----KAG---DHLISDECLYGCTHALF  115 (394)
T ss_dssp             TCCHHHHHHHH----HHHHHHTCSE--------EEEESSHHHHHHHHHHHHC-----CTT---CEEEEESCCCHHHHHHH
T ss_pred             CCCHHHHHHHH----HHHHHhCCcc--------eeeeccchHHHHHHHHhhc-----ccc---cccccccceeehhhHhH
Confidence            45676666666    5888888753        2788999999999888876     377   8999999988664    


Q ss_pred             HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHH-HcCCeEEEeccccchhhh
Q 013675          240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL-SHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~-~~~i~lhVD~a~gg~~~p  318 (438)
                      .+....+|+++..++.+     |+++++++|+++|++|++..|+||+..+.|+++++++++ ++|+.++||.+++..+. 
T Consensus       116 ~~~~~~~gi~~~~~d~~-----d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~-  189 (394)
T d1e5ea_         116 EHALTKFGIQVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI-  189 (394)
T ss_dssp             HTHHHHTTCEEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT-
T ss_pred             HHHhhccceeeeccCCC-----CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCccc-
Confidence            44566679999999865     778999999999999999999999999999999988665 47899999999865433 


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                                 ++....|+|++.-|..||+.|-.  -.|+++.+++............          ..|.-.+..  .
T Consensus       190 -----------~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~----------~~G~~lsp~--~  246 (394)
T d1e5ea_         190 -----------TNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKD----------ITGSVISPH--D  246 (394)
T ss_dssp             -----------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCC----------CCCCCCCHH--H
T ss_pred             -----------CCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHH----------hhCCCCChH--H
Confidence                       23344589999999999954332  2676666654332211111111          122222322  6


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +|..+  .|.+.+.-+.++..++|..+++.|++.|.++-+.|
T Consensus       247 a~ll~--rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~y  286 (394)
T d1e5ea_         247 AWLIT--RGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYY  286 (394)
T ss_dssp             HHHHH--HHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             HHHHH--hhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeC
Confidence            66665  57788899999999999999999999998865544

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.63  E-value=1.7e-14  Score=140.70  Aligned_cols=222  Identities=11%  Similarity=0.029  Sum_probs=161.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH---
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD---  240 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~---  240 (438)
                      ...|....+|+    .++++-|...        .+.+++|..|+..++.++.     ++|   ++|+++...|....   
T Consensus        64 ~~nPt~~~LE~----~la~LEgg~~--------a~~~sSGMaAi~~~l~~l~-----~~G---d~iv~~~~~Yg~t~~l~  123 (398)
T d1qgna_          64 YGNPTTVVLEE----KISALEGAES--------TLLMASGMCASTVMLLALV-----PAG---GHIVTTTDCYRKTRIFI  123 (398)
T ss_dssp             GCCHHHHHHHH----HHHHHHTCSE--------EEEESCHHHHHHHHHHHHS-----CSS---CEEEEETTSCHHHHHHH
T ss_pred             CCChHHHHHHH----HHHHHhCCce--------EEEecCcchHHHHHHhhcc-----ccc---ccccccccccchhhhhh
Confidence            44566666666    5888888753        2789999999999998876     377   99999999987754   


Q ss_pred             -HHHhhcCcEEEEeeCCCCCccCHHH-HHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675          241 -KAAQYFNIKLWRVPVDKEFRADVKA-IKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP  318 (438)
Q Consensus       241 -~a~~~~Gi~v~~v~~~~~~~~d~~~-Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p  318 (438)
                       +....+|+++..++..     |.++ .++.++++|++|++..|+||+..+-||++|+++||++|++++||.+++..+. 
T Consensus       124 ~~~~~~~gi~~~~~~~~-----~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~-  197 (398)
T d1qgna_         124 ETILPKMGITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN-  197 (398)
T ss_dssp             HHTGGGGTCEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-
T ss_pred             ccccccccccccccccc-----chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeecccc-
Confidence             4455569999888743     3444 4456678999999999999999999999999999999999999999865332 


Q ss_pred             hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675          319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG  396 (438)
Q Consensus       319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~  396 (438)
                                 ++....|+|++.-|..||..|-..  .|+ +..+++........... .          |.-..  ...
T Consensus       198 -----------~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~-v~~~~~~~~~~~~~~~~-~----------G~~l~--p~~  252 (398)
T d1qgna_         198 -----------QKALALGADLVLHSATKFLGGHNDVLAGC-ISGPLKLVSEIRNLHHI-L----------GGALN--PNA  252 (398)
T ss_dssp             -----------CCTTTTTCSEEEECTTTTTTCSSSCCCEE-EEECHHHHHHHHHHHHH-H----------CCCCC--HHH
T ss_pred             -----------CCchhhCCCEEEEechhhcCcccceeehh-hcchhhhhhhhhhhccc-C----------CCcCC--HHH
Confidence                       233456899999999999544322  454 44444443322211111 1          21222  226


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      +|..+  .|.+-+.-+.++..++|..+++.|++.|.++-+.|
T Consensus       253 a~ll~--rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  292 (398)
T d1qgna_         253 AYLII--RGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYY  292 (398)
T ss_dssp             HHHHH--HHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             HHHHH--hcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC
Confidence            77666  46688899999999999999999999998875544

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.61  E-value=1e-14  Score=143.81  Aligned_cols=184  Identities=14%  Similarity=0.112  Sum_probs=136.0

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK  241 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~  241 (438)
                      .|....|..++.+.+.+++.+.+|.+.+.  .+|  ++|+|+++++.+++.++.+     +|   ++|+++.++|+.+..
T Consensus        66 ~Y~~~~G~~~lR~aia~~l~~~~g~~~~~--~~I--~it~G~~~al~~~~~~l~~-----~g---d~v~~~~P~y~~~~~  133 (403)
T d1wsta1          66 QYGTTKGFTPLRLALARWMEKRYDIPMSK--VEI--MTVAGSQQALDLIGRVFLN-----PG---DPIVVEAPTYLAAIQ  133 (403)
T ss_dssp             SCCCSSCCHHHHHHHHHHHHHHHCCCCTT--CEE--EEESSHHHHHHHHHHHHCC-----TT---CEEEEEESCCHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHHhCCCCCh--HHe--eecccchHHHHHHHHHHhh-----cC---CccccCCCcchhhhH
Confidence            35556777888888999999888865321  136  9999999999999998763     67   899999999999999


Q ss_pred             HHhhcCcEEEEeeCCCCCc--cCHH----HHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675          242 AAQYFNIKLWRVPVDKEFR--ADVK----AIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL  312 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~~~~--~d~~----~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~  312 (438)
                      .+..+|++++.||.++++.  .+..    +..+..++.+.+++.++|+||||.+.+   +++|+++|++||+++++|++|
T Consensus       134 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y  213 (403)
T d1wsta1         134 AFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPY  213 (403)
T ss_dssp             HHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHhhccccceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccch
Confidence            9999999999999875321  1111    222233445778999999999999876   568888999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCc-cCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          313 GGFVLPFAKKLGYPIPPFD-FSVQGVTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       313 gg~~~pf~~~~g~~~p~~~-~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +.+...     +.+.+++. ....+...+..+.+|++.++..+|+++..++
T Consensus       214 ~~l~~~-----~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~  259 (403)
T d1wsta1         214 SELRYS-----GEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPH  259 (403)
T ss_dssp             TTCBCS-----SCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHH
T ss_pred             hheecC-----CCCCCcccccCCCCcEEEEccccceecCcccccccccchH
Confidence            765431     11111221 1233456788899999755577999877543

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.60  E-value=1e-14  Score=142.95  Aligned_cols=238  Identities=13%  Similarity=0.111  Sum_probs=161.4

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCccce--eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC---cCcHH--
Q 013675          168 SVARFEAEVIAMTAALLGNKEKASGGQVCG--NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA---HSAYD--  240 (438)
Q Consensus       168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g--~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~---h~s~~--  240 (438)
                      .+.++|..+++...++||++..+     +|  +-..+|+.|++.+..++.+     +|   |+|+.-+..   |.+.-  
T Consensus        70 ~iD~iE~la~~ra~~lF~~~~a~-----w~vNVqp~SGs~An~av~~all~-----pg---D~Im~l~l~~GGHlshg~~  136 (463)
T d2a7va1          70 VVDEIELLCQRRALEAFDLDPAQ-----WGVNVQPYSGSPANLAVYTALLQ-----PH---DRIMGLDLPDGGHLTHGYM  136 (463)
T ss_dssp             -CTHHHHHHHHHHHHHTTCCTTT-----EEEECCCSSHHHHHHHHHHHHCC-----SC---EECCC--------------
T ss_pred             hHHHHHHHHHHHHHHHhCCCchh-----ccCCccccccHHHHHHHHHHHcC-----CC---ceEEeeccCcCcccccccc
Confidence            35678988999999999999875     43  5678999999999998874     78   887654433   44332  


Q ss_pred             ---HHHhhcCc--EEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675          241 ---KAAQYFNI--KLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       241 ---~a~~~~Gi--~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g  313 (438)
                         ......|.  +....++++ ++.+|.+++++...+ +|++|++-.-.+|  ...|+++++++|++.|.++++|.++-
T Consensus       137 ~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~  214 (463)
T d2a7va1         137 SDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHI  214 (463)
T ss_dssp             -----------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGG
T ss_pred             cccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEecccccc--cccCHHHHHHHhhcccceEEechhhh
Confidence               12222343  455556674 789999999998865 7999987665554  56799999999999999999999987


Q ss_pred             chhhhhhhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccc---------cchhcccccCCCccCCC
Q 013675          314 GFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRK---------HQFVAVTEWSGGLYVSP  383 (438)
Q Consensus       314 g~~~pf~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~---------~~~~~~~~~~g~~~~~~  383 (438)
                      .+++.    .|. .| |+    ..+|+++.++||.+.||.| |+++++++....         ..+...-+.    -.-|
T Consensus       215 aGLIA----~g~-~~sP~----~~aDvvt~tTHKTlrGPrg-GiIl~~~~~~~~~~~~~~~~~~~~~~~i~~----avFP  280 (463)
T d2a7va1         215 SGLVA----AKV-IPSPF----KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINF----AVFP  280 (463)
T ss_dssp             HHHHH----TTS-SCCGG----GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHH----HHTT
T ss_pred             hHHhh----hhh-hcChh----hhhhhhhchhhhhhcCCCc-eEEEEcccccccccccCccchhHHHHHhhh----hcCc
Confidence            77663    232 11 23    3579999999999988886 888888642100         000000000    0113


Q ss_pred             CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+.|+..-..+++...+++......+++..++..++|+.|++.|.+. |+++
T Consensus       281 g~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v  331 (463)
T d2a7va1         281 SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSL  331 (463)
T ss_dssp             TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             ccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCee
Confidence            44455555567888888877666778999999999999999999886 6665

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.60  E-value=3.1e-14  Score=139.95  Aligned_cols=243  Identities=13%  Similarity=0.103  Sum_probs=172.7

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC---CcCcHHHH
Q 013675          166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS---AHSAYDKA  242 (438)
Q Consensus       166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~---~h~s~~~a  242 (438)
                      ...+.++|..+++...++||+++..   +.+-+-..+|+.|++.+..++..     +|   |.|+....   .|.+.-..
T Consensus        72 ~~~iD~iE~la~~ra~~lF~~~~~~---~~anVqp~SGs~An~av~~all~-----pg---D~im~~~l~~GGHlshg~~  140 (470)
T d1rv3a_          72 TEHIDELETLCQKRALQAYGLDPQC---WGVNVQPYSGSPANFAVYTALVE-----PH---GRIMGLDLPDGGHLTHGFM  140 (470)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCTTT---EEEECCCSSHHHHHHHHHHHHTC-----TT---CEEEEECGGGTCCGGGCCB
T ss_pred             chhHHHHHHHHHHHHHHHhCCChhh---ccccccccCCccHHHHHHHHhcC-----CC---CeEeeeccccCCccccccc
Confidence            4457788999999999999998643   12335678999999999999873     78   88887554   34443211


Q ss_pred             -------HhhcCcEEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675          243 -------AQYFNIKLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG  313 (438)
Q Consensus       243 -------~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g  313 (438)
                             +.-...+....++++ ++.+|.+++++...+ +|++|++-.-.+|  ...|++++.++|++.|+++++|.++-
T Consensus       141 ~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~  218 (470)
T d1rv3a_         141 TDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYS--RNLDYGRLRKIADENGAYLMADMAHI  218 (470)
T ss_dssp             CSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             ccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhhcc--ccCCHHHHHHHHhccCCeEEecchhh
Confidence                   111124788888886 689999999998764 8999887665553  56799999999999999999999987


Q ss_pred             chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc---------ccchhcccccCCCccCCCC
Q 013675          314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR---------KHQFVAVTEWSGGLYVSPT  384 (438)
Q Consensus       314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~---------~~~~~~~~~~~g~~~~~~~  384 (438)
                      .+++.    .|.--.|+    ..+|+++.++||.+.||.| |+++++++.-.         ...+....+.    -.-|.
T Consensus       219 aGLIA----~g~~~sPl----~~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~~i~~----avFPg  285 (470)
T d1rv3a_         219 SGLVV----AGVVPSPF----EHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLINS----AVFPG  285 (470)
T ss_dssp             HHHHH----HTSSCCGG----GTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHHHH----HHTTT
T ss_pred             hhhcc----ccccCChh----heeeeeeeehhhhccCCcc-eEEEEccccccccccccchhHHHHHHHHhh----hcCcc
Confidence            77663    23201133    3569999999999989987 88888864100         0000000000    01133


Q ss_pred             ccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       385 ~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      ++|...-..+++...+++......+++..++..++|+.|++.|.+. |+++
T Consensus       286 ~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v  335 (470)
T d1rv3a_         286 LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKI  335 (470)
T ss_dssp             TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             ccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-Ccee
Confidence            4444445567888888887766678999999999999999999886 6655

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.2e-14  Score=138.76  Aligned_cols=222  Identities=12%  Similarity=0.031  Sum_probs=164.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH-
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-  242 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a-  242 (438)
                      ...|....+|+    .++++-|...        ++.+++|..|+..++.++.     ++|   ++|+++...|...... 
T Consensus        55 ~~nPt~~~le~----~la~LEg~~~--------a~~~~SGMaAi~~~l~~l~-----~~G---d~iv~~~~~Yg~T~~l~  114 (391)
T d1cl1a_          55 RGTLTHFSLQQ----AMCELEGGAG--------CVLFPCGAAAVANSILAFI-----EQG---DHVLMTNTAYEPSQDFC  114 (391)
T ss_dssp             TCCHHHHHHHH----HHHHHHTCSE--------EEEESSHHHHHHHHHHHHC-----CTT---CEEEEETTSCHHHHHHH
T ss_pred             CCChhHHHHHH----HHHHHhCCcc--------EEEeccccceeeehhhccc-----CCC---CeEEEecccccchhhhh
Confidence            44566666666    5888888753        2788999999999988876     377   9999999998875444 


Q ss_pred             ---HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhh
Q 013675          243 ---AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVL  317 (438)
Q Consensus       243 ---~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~  317 (438)
                         +..+|+++..++.+     |.++++++++++|++|++..|+||+..+.|+++|+++|+++  |++++||.+++..+.
T Consensus       115 ~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~  189 (391)
T d1cl1a_         115 SKILSKLGVTTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL  189 (391)
T ss_dssp             HHTGGGGTCEEEEECTT-----CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS
T ss_pred             hhcccccccccccccCc-----cccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhh
Confidence               44559999988754     68999999999999999999999999999999999999775  999999999875433


Q ss_pred             hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675          318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA  395 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia  395 (438)
                                  ++....|+|++..|..||..|-.  -.|+++. +++........... .          |.....  .
T Consensus       190 ------------~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~-~~~~~~~~~~~~~~-~----------G~~~~p--~  243 (391)
T d1cl1a_         190 ------------FKALDFGIDVSIQAATKYLVGHSDAMIGTAVC-NARCWEQLRENAYL-M----------GQMVDA--D  243 (391)
T ss_dssp             ------------SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEE-CTTTHHHHHHHHHH-T----------TCCCCH--H
T ss_pred             ------------hcccccccceEEeecchhccccccccccceec-cccccccchhhhhc-c----------cccCCc--h
Confidence                        22334589999999999954432  2565554 44433222111111 1          122222  2


Q ss_pred             HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675          396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF  438 (438)
Q Consensus       396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~  438 (438)
                      .+|..+  .|.+-+..++++..++|..+++.|++.|.++-+.|
T Consensus       244 ~a~ll~--rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~y  284 (391)
T d1cl1a_         244 TAYITS--RGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNH  284 (391)
T ss_dssp             HHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             hhhhhh--ccchhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            666665  46688899999999999999999999998876544

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.57  E-value=2.4e-14  Score=141.16  Aligned_cols=206  Identities=12%  Similarity=0.066  Sum_probs=135.8

Q ss_pred             HHHHHHHHHhhccCCC-CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHH---HHHHHHHHHHHHHH
Q 013675          146 SLINEACSMFAHTNPL-HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTE---SILLAVKSSRDYMR  219 (438)
Q Consensus       146 ~~~~~~~~~~~~~n~~-~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~---a~~~al~a~~~~~~  219 (438)
                      ..+.++.......+.. .|....|..++.+++.+++.+..+..  ++.    +..+-+.+++.   ++..+++++.    
T Consensus        49 ~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~----i~~~~~~~~~g~~~~~~~~~~~l~----  120 (401)
T d7aata_          49 NCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGR----YVTVQGISGTGSLRVGANFLQRFF----  120 (401)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----EEEEEEEHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCc----eEEeccchHHHHHHHHHHhhHhhc----
Confidence            4455554444333333 47777888888888888887665532  232    31112223333   3333444443    


Q ss_pred             HhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---
Q 013675          220 NKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---  291 (438)
Q Consensus       220 ~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---  291 (438)
                       .+|   |+|+++++.|+.+...++..|++++.+|+.+  ++..|.+.+.+.+.   ++++++++++|+||||.+.+   
T Consensus       121 -~pG---d~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~  196 (401)
T d7aata_         121 -KFS---RDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQ  196 (401)
T ss_dssp             -TTC---CEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHH
T ss_pred             -CCC---ceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHH
Confidence             378   9999999999999999999999999999853  67789999888874   57899999999999999976   


Q ss_pred             HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccc
Q 013675          292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE  363 (438)
Q Consensus       292 i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~  363 (438)
                      +++|.++|++|+++++.|.+|..+...-..........+......+.++...+.|++..+..+|++......
T Consensus       197 ~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~  268 (401)
T d7aata_         197 WKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRD  268 (401)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSS
T ss_pred             HHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecchHH
Confidence            678999999999999999999876541000000000000011122333344444565666779998887553

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=6.7e-14  Score=137.14  Aligned_cols=248  Identities=13%  Similarity=0.077  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      +.+.+.+.+..+-... .......+...+..++.+.+++++|.+..        +++++|+.|+..++.++..     ++
T Consensus        57 v~~a~~~a~~~~G~~~-~~sr~~~g~~~~~~~lE~~LA~~~g~e~a--------l~~~SG~~an~~~i~al~~-----~~  122 (383)
T d1bs0a_          57 IIRAWQQGAEQFGIGS-GGSGHVSGYSVVHQALEEELAEWLGYSRA--------LLFISGFAANQAVIAAMMA-----KE  122 (383)
T ss_dssp             HHHHHHHHHHHHCSCC-CSBTTTTCCCHHHHHHHHHHHHHHTCSEE--------EEESCHHHHHHHHHHHHCC-----TT
T ss_pred             HHHHHHHHHHHhCCCC-CccccccCcchHHHHHHHHHHHhcCCCce--------EEecccchhhHHHHHhhcC-----CC
Confidence            4455556665543222 22333334445555666789999998632        7889999999999988763     56


Q ss_pred             CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHH
Q 013675          224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELAL  300 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~  300 (438)
                         +.|++....|.++...++..+.+++.++.+     |++++++.+..   ++.+|+.....+.+|.+.|+++|.++|+
T Consensus       123 ---d~v~~d~~~h~si~~g~~~~~~~~~~~~hn-----d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~  194 (383)
T d1bs0a_         123 ---DRIAADRLSHASLLEAASLSPSQLRRFAHN-----DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ  194 (383)
T ss_dssp             ---CEEEEETTCCHHHHHHHHTSSSEEEEECTT-----CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             ---ceEEeeccccHHHhhccccCCCcceEecch-----HHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHH
Confidence               899999999999999999999999988865     88888888754   4679999999999999999999999999


Q ss_pred             HcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCcc
Q 013675          301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY  380 (438)
Q Consensus       301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~  380 (438)
                      +||++++||++++.+++.   ..|...  .+......|.+..+..|.+ +..| |++..+ .+..+........+     
T Consensus       195 ~~~~~livDeah~~gv~G---~~g~G~--~~~~~~~~~~~~~t~~ka~-g~~G-g~v~~~-~~~~~~l~~~~~~~-----  261 (383)
T d1bs0a_         195 QHNGWLMVDDAHGTGVIG---EQGRGS--CWLQKVKPELLVVTFGKGF-GVSG-AAVLCS-STVADYLLQFARHL-----  261 (383)
T ss_dssp             HTTCEEEEECTTTTTTSS---GGGCCH--HHHTTCCCSEEEEESSSTT-SSCC-EEEEEC-HHHHHHHHHHCHHH-----
T ss_pred             hcCcEEEeecceeeeecC---Ccccch--HHHcCCccccccccccccc-cccc-cccccc-hhHHHHHHhhchhh-----
Confidence            999999999999877663   111100  1111123467777777884 4443 444444 33332221111111     


Q ss_pred             CCCCccCCCC-CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          381 VSPTVAGSRP-GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       381 ~~~~~~gsr~-~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                          ..++.. ...++++.++++.+-....++..++..++..++.+.|++.
T Consensus       262 ----~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  308 (383)
T d1bs0a_         262 ----IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL  308 (383)
T ss_dssp             ----HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ----hhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence                011111 1223455566665555666778888899999999999876

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=9.8e-14  Score=133.35  Aligned_cols=236  Identities=15%  Similarity=0.073  Sum_probs=150.8

Q ss_pred             HHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEE
Q 013675          151 ACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMI  230 (438)
Q Consensus       151 ~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Vi  230 (438)
                      .+...+....+++...++..++.+.+.+++.. -+.++++    |  ++|+|+++++.++++         .|   |+|+
T Consensus        40 ~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~-~~v~~d~----I--~it~G~~~~l~~l~~---------~~---d~v~  100 (334)
T d2f8ja1          40 EVFRRLNSDALRIYYDSPDEELIEKILSYLDT-DFLSKNN----V--SVGNGADEIIYVMML---------MF---DRSV  100 (334)
T ss_dssp             HHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTC-SSCCGGG----E--EEEEHHHHHHHHHHH---------HS---SEEE
T ss_pred             HHHHHhhcchhcCCCCCCcHHHHHHHHHHhcc-cCCCcce----E--EecCcchhHHHHHhh---------hc---cccc
Confidence            33333444443333344555555554444322 1344554    6  899999998877554         34   7899


Q ss_pred             ecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEec
Q 013675          231 IPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDL  310 (438)
Q Consensus       231 v~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~  310 (438)
                      ++.++|+.+..+++.+|++++.||+++++..+     ++..++++++++++|+||||.+.+.++|.+++ ++++++++|.
T Consensus       101 i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~-----~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd  174 (334)
T d2f8ja1         101 FFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIP-----EVNVGEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDE  174 (334)
T ss_dssp             ECSSCCHHHHHHHHHHTCCEEECCCCTTSCCC-----CCCCCTTEEEEEESSCTTTCCCCCHHHHHHHH-TTTCEEEEEC
T ss_pred             cccccccccccchhccCCcccccccccccccc-----ccccccceEEEecccccccceeecHHHhhccc-cceeEEeecc
Confidence            99999999999999999999999998866554     23456789999999999999999998888765 5789999999


Q ss_pred             cccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675          311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR  389 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr  389 (438)
                      ++..+...     .  . ........-.+++.|+.|. +..+..+|+++.. +++..........|.-          +.
T Consensus       175 ~~~~~~~~-----~--~-~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~-~~~i~~l~~~~~~~~~----------s~  235 (334)
T d2f8ja1         175 AYYEFHGE-----S--Y-VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRLPFNV----------SY  235 (334)
T ss_dssp             TTGGGTCC-----C--C-GGGGGTCSSEEEEEESTTTSSCTTTCEEEEEEC-HHHHHHHHHHSCTTCS----------CH
T ss_pred             cchhhccc-----c--c-ccccccCceEEEEecCccccchhhhhhhhcccc-hHHHHHHHHhhccccc----------ch
Confidence            87543221     0  0 1111222335777888997 3355678987764 4443322211111110          01


Q ss_pred             CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .  ....+.+.+  -..+.+++..++..+.++++.+.|+++ |+++
T Consensus       236 ~--~~~~a~~~l--~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~  276 (334)
T d2f8ja1         236 V--SQMFAKVAL--DHREIFEERTKFIVEERERMKSALREM-GYRI  276 (334)
T ss_dssp             H--HHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEE
T ss_pred             h--hhhhccccc--ccccchhhHHHHHHHHHHHHHHHHHHC-CCeE
Confidence            0  111222333  235667777888888899999999887 5553

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=8.1e-14  Score=135.86  Aligned_cols=221  Identities=15%  Similarity=0.103  Sum_probs=155.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA  243 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~  243 (438)
                      ...|....+|+    .++.|-|...        ++.+++|..|+..++ ++.     .+|   ++|+++...|......+
T Consensus        52 ~gnPT~~~lE~----~la~LE~~~~--------a~~~sSGmaAi~~~l-~~l-----~~g---d~iv~~~~~yg~t~~~~  110 (393)
T d1n8pa_          52 SQNPNRENLER----AVAALENAQY--------GLAFSSGSATTATIL-QSL-----PQG---SHAVSIGDVYGGTHRYF  110 (393)
T ss_dssp             TCCHHHHHHHH----HHHHHTTCSE--------EEEESCHHHHHHHHH-HTS-----CSS---CEEEEESSCCHHHHHHH
T ss_pred             CCChHHHHHHH----HHHHHhCCce--------EEEecCchhHHHhhh-hcc-----cCC---Ceeeeeeeecccchhhh
Confidence            34566666666    5888877642        267788877775443 333     266   89999998887754444


Q ss_pred             ----hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHH----HcCCeEEEeccccch
Q 013675          244 ----QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL----SHGTCLHVDLCLGGF  315 (438)
Q Consensus       244 ----~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~----~~~i~lhVD~a~gg~  315 (438)
                          ..+|+++..++.      +.++++++++++|++|++..|.||+..+.|+++|+++||    ++|++++||.+++..
T Consensus       111 ~~~l~~~gi~~~~~~~------~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP  184 (393)
T d1n8pa_         111 TKVANAHGVETSFTND------LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSP  184 (393)
T ss_dssp             HHTSTTTCSCCEEESS------HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHH
T ss_pred             hhhhhcccceeEEeec------chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCc
Confidence                445888777652      467899999999999999999999999999999999999    678999999998765


Q ss_pred             hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL  393 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~  393 (438)
                      +.         ..|+   ..|+|++.-|..||..|-.  -.|++..+++.+........ ...          |.-... 
T Consensus       185 ~~---------~~Pl---~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~-~~~----------G~~~~p-  240 (393)
T d1n8pa_         185 YI---------SNPL---NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ-NAI----------GAIPSP-  240 (393)
T ss_dssp             HH---------CCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH-HHH----------CCCCCH-
T ss_pred             cc---------CCch---hhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHH-hhc----------CCCCCh-
Confidence            43         1133   3589999999999954432  25666666554432211111 111          122222 


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC-CCccccCC
Q 013675          394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF-PMFLPPLF  438 (438)
Q Consensus       394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~g~~~~l~  438 (438)
                       ..+|..+  .|.+-+..+.++..++|..+++.|++. |.++-+.|
T Consensus       241 -~~a~ll~--rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~y  283 (393)
T d1n8pa_         241 -FDAWLTH--RGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNY  283 (393)
T ss_dssp             -HHHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEEC
T ss_pred             -HHHHHHH--hCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEec
Confidence             2677776  566888999999999999999999865 66655443

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=6.7e-14  Score=140.72  Aligned_cols=247  Identities=12%  Similarity=0.046  Sum_probs=152.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC-eEEecCCCcCcHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP-EMIIPVSAHSAYDK  241 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~-~Viv~~~~h~s~~~  241 (438)
                      |...|.+.++|+    .+++++|.+.        .+++++||+|+..++++++.........++. .++.+...|.....
T Consensus        70 Y~~~~~~~~le~----~~a~l~G~~~--------~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~  137 (467)
T d2v1pa1          70 FSGSRSYYALAE----SVKNIFGYQY--------TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQG  137 (467)
T ss_dssp             SSSCHHHHHHHH----HHHHHTCCSE--------EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHH
T ss_pred             hcCCchHHHHHH----HHHHHHCCCE--------EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHH
Confidence            455677777775    5799999873        2899999999999999998765543232223 34455555666777


Q ss_pred             HHhhcCcEEEEeeCCC----------CCccCHHHHHHhhcc----CcEEEEEecCCCCCc-cc---cCHHHHHHHHHHcC
Q 013675          242 AAQYFNIKLWRVPVDK----------EFRADVKAIKKYINR----NTVLIVGSAPGFPHG-II---DPIQELGELALSHG  303 (438)
Q Consensus       242 a~~~~Gi~v~~v~~~~----------~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG-~i---ddi~~I~~la~~~~  303 (438)
                      ++...|.+++.++.+.          .+.+|++++++.+++    .+.++++...++..| .+   +++++|+++|++||
T Consensus       138 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g  217 (467)
T d2v1pa1         138 HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYD  217 (467)
T ss_dssp             HHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcC
Confidence            7888899999887652          467999999999974    356777777766554 33   46889999999999


Q ss_pred             CeEEEeccccchhhhhhhh--cCC-CCCCCc---cCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc---cc
Q 013675          304 TCLHVDLCLGGFVLPFAKK--LGY-PIPPFD---FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV---TE  374 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~--~g~-~~p~~~---~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~---~~  374 (438)
                      +++|+|+|+......+...  .++ ..+..+   .....+|+++++.||.+.+|.| |+++.+++.+........   ..
T Consensus       218 ~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~~~~~~~~~~~~~~~  296 (467)
T d2v1pa1         218 IPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVV  296 (467)
T ss_dssp             CCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHH
T ss_pred             CEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchhhhhHHHhhcccccc
Confidence            9999999975443321110  000 000000   0012369999999999777655 777776654332110000   00


Q ss_pred             cCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ..+.    +    +..+...+++.+....+......+..++..++++++.++|++.
T Consensus       297 ~~~~----~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (467)
T d2v1pa1         297 QEGF----P----TYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI  344 (467)
T ss_dssp             TTSS----C----CCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccC----c----chhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            0111    0    1111112222222222222223456667778889999988875

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.52  E-value=2.6e-13  Score=136.21  Aligned_cols=187  Identities=17%  Similarity=0.133  Sum_probs=126.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675          163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA  242 (438)
Q Consensus       163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a  242 (438)
                      |...|.+.++|+    .+++++|.+.      +  ++|++||+|+..++++++++... .|..++.++.+...|.+....
T Consensus        71 y~~~~~~~~le~----~~a~l~g~~~------~--~~~~sGt~A~~~a~~~~~~~g~~-~~~~~~~~i~~~~h~~t~~~~  137 (465)
T d1ax4a_          71 YAGSRNYYDLKD----KAKELFNYDY------I--IPAHQGRGAENILFPVLLKYKQK-EGKAKNPVFISNFHFDTTAAH  137 (465)
T ss_dssp             SSSCHHHHHHHH----HHHHHHCCCE------E--EEESSHHHHHHHHHHHHHHHHHH-TTCCSSCEEEESSCCHHHHHH
T ss_pred             hccChHHHHHHH----HHHHHHCCCE------E--EECCCcHHHHHHHHHHHHHHHHh-cCCCCCeEEeccchhhhhHHH
Confidence            445677777665    5788899863      3  89999999999999999976543 444455666666666666666


Q ss_pred             HhhcCcEEEEeeC---------C-CCCccCHHHHHHhhcc----CcEEEEEecCCCCCcc-c---cCHHHHHHHHHHcCC
Q 013675          243 AQYFNIKLWRVPV---------D-KEFRADVKAIKKYINR----NTVLIVGSAPGFPHGI-I---DPIQELGELALSHGT  304 (438)
Q Consensus       243 ~~~~Gi~v~~v~~---------~-~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~-i---ddi~~I~~la~~~~i  304 (438)
                      ....|...+.++.         + .++.+|+++++++|++    .+.+++.+..++..|. +   +++++|+++|++||+
T Consensus       138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~  217 (465)
T d1ax4a_         138 VELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI  217 (465)
T ss_dssp             HHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCC
Confidence            7777888776643         2 2678999999999974    3556666666665543 2   357899999999999


Q ss_pred             eEEEeccccchhhhhhhh--cCCCCCCCc---cC-CCCccEEEeCCCCCCCCCCCcEEEEEeccc
Q 013675          305 CLHVDLCLGGFVLPFAKK--LGYPIPPFD---FS-VQGVTSISVDVHKYGLAPKGTSVVLYRNRE  363 (438)
Q Consensus       305 ~lhVD~a~gg~~~pf~~~--~g~~~p~~~---~~-~~gvdsis~s~hK~~~~p~g~g~l~~r~~~  363 (438)
                      ++|+|+|+......+...  .+.......   .. ...+|+++++.||.+.+|. .|+++.++..
T Consensus       218 ~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~-~g~l~~~~~~  281 (465)
T d1ax4a_         218 FVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI-GGLVAIRDNE  281 (465)
T ss_dssp             CEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS-CEEEEESSCH
T ss_pred             EEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc-ceeEeecchH
Confidence            999999986544322110  000000000   00 1125899999999965554 5887877653

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.2e-13  Score=135.97  Aligned_cols=249  Identities=12%  Similarity=0.061  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      +.+.+.+.+..+... ...+....+......++.+.+++++|.+.      +  +++++|++|+..++.++..     ++
T Consensus        64 v~~a~~~a~~~~g~~-~~~sr~~~g~~~~~~~lE~~lA~~~g~e~------a--l~~~SG~~An~~~i~~l~~-----~~  129 (401)
T d1fc4a_          64 LIAAAKAGMDSHGFG-MASVRFICGTQDSHKELEQKLAAFLGMED------A--ILYSSCFDANGGLFETLLG-----AE  129 (401)
T ss_dssp             HHHHHHHHHHHHCSC-CCSCHHHHCCBHHHHHHHHHHHHHHTCSE------E--EEESCHHHHHHTTHHHHCC-----TT
T ss_pred             HHHHHHHHHHHhCCC-cccceeeccCcHHHHHHHHHHHHhhcCCc------e--EEecchhhhhHHHHHHhcC-----CC
Confidence            444445555544322 22222222223445566667899999864      2  8999999999999988762     55


Q ss_pred             CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc------cCcEEEEEecCCCCCccccCHHHHHH
Q 013675          224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDPIQELGE  297 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~iddi~~I~~  297 (438)
                         +.|++....|.+....+...+.++..++..     |.+++++++.      ..+.+|++....+..|.+.|+++|.+
T Consensus       130 ---d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~  201 (401)
T d1fc4a_         130 ---DAIISDALNHASIIDGVRLCKAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCD  201 (401)
T ss_dssp             ---CEEEEETTCCHHHHHHHHTSCSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHH
T ss_pred             ---cEEEeCCcchHHHHccccccCceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHH
Confidence               899999999999999999999998887754     6666666553      23568887888778899999999999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG  377 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g  377 (438)
                      ||++||+.+++|++++++.+-   ..|..+.+.-.....+|+++.+..|.+.++.| |++ ..++++.+........+  
T Consensus       202 L~~~~~a~LivDeah~~g~~g---~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G-g~v-~g~~~~~~~l~~~~~~~--  274 (401)
T d1fc4a_         202 LADKYDALVMVDDSHAVGFVG---ENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYT-AARKEVVEWLRQRSRPY--  274 (401)
T ss_dssp             HHHHTTEEEEEECTTTTTTSS---TTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEE-EECHHHHHHHHHHCHHH--
T ss_pred             HHhhcCcEEEehhhhcccccc---CCCCccchhccCCCCCeEEEeecccccccCCc-ccc-cCCHHHHHHHHcCChhh--
Confidence            999999999999999877652   11110001111223479999999999655543 554 44455443321111111  


Q ss_pred             CccCCCCccCCCCC-chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          378 GLYVSPTVAGSRPG-GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       378 ~~~~~~~~~gsr~~-~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                             ..++... ...++...+++.+  ....+..++..++.+++++.+.+.
T Consensus       275 -------~~s~~l~p~~~~aa~~~l~~~--~~~~~~~~~l~~~~~~~~~~l~~~  319 (401)
T d1fc4a_         275 -------LFSNSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAA  319 (401)
T ss_dssp             -------HHSCCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -------hhcCCCCHHHHHHHHhhhccc--ccCHHHHHHHHHHHHHHHhhhccc
Confidence                   1111111 2233344444433  334677888999999999998875

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.51  E-value=1.5e-13  Score=130.16  Aligned_cols=233  Identities=15%  Similarity=0.097  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH---hhcC
Q 013675          171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA---QYFN  247 (438)
Q Consensus       171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~---~~~G  247 (438)
                      +..+++++++++++|.+..     +  ++|+|||+||+.++.+++.     .+   +.+++....|.+....+   ...+
T Consensus        38 ~~~~~l~~~la~~~g~~~~-----v--~f~~sGt~An~~a~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~  102 (345)
T d1v72a1          38 ELTAQVKRKFCEIFERDVE-----V--FLVPTGTAANALCLSAMTP-----PW---GNIYCHPASHINNDECGAPEFFSN  102 (345)
T ss_dssp             HHHHHHHHHHHHHHTSCCE-----E--EEESCHHHHHHHHHHTSCC-----TT---EEEEECTTSHHHHSSTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCcE-----E--EECCchHHHHHHHHHHHHh-----cC---CccccccccceeeechhhHHHhcC
Confidence            4566778889999998643     3  8999999999999998763     34   67888888888866543   3446


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhccC------cE-EEEEecCCCCCcc---ccCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINRN------TV-LIVGSAPGFPHGI---IDPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~~------t~-~vv~~~~~~~tG~---iddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ..+..++.+.++..|++++++.+.+.      +. .++.....++.|.   +++++++.++|++||+++|+|++++++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~  182 (345)
T d1v72a1         103 GAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANAL  182 (345)
T ss_dssp             SCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHH
T ss_pred             cccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceec
Confidence            67777777778899999999999753      22 2333333344444   45688899999999999999999988766


Q ss_pred             hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                      +.-. .+  . .........+.++.+.+|.+..+.  +...................           .+.-......++
T Consensus       183 ~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~aa  245 (345)
T d1v72a1         183 VSLG-CS--P-AEMTWKAGVDALSFGATKNGVLAA--EAIVLFNTSLATEMSYRRKR-----------AGHLSSKMRFLS  245 (345)
T ss_dssp             HHHT-CC--T-TTTTGGGTCCEEEECCGGGTCSSC--EEEEESSGGGHHHHHHHHHH-----------TTCCCSSTHHHH
T ss_pred             cccc-cC--H-HHhhccccccccccCccccccccc--cccccchhhhhhhccccccc-----------cccccchhhHHh
Confidence            4211 11  1 122233345677777777644333  33344433322111100000           011111123355


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .++...+....+.+...+...+++++.+.+.++|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  283 (345)
T d1v72a1         246 AQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV  283 (345)
T ss_dssp             HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             hhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEe
Confidence            56666677778888888899999999999999999865

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.49  E-value=5e-13  Score=131.99  Aligned_cols=209  Identities=12%  Similarity=0.092  Sum_probs=138.6

Q ss_pred             HHHHHHHHhhccCC--CCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHH--H
Q 013675          147 LINEACSMFAHTNP--LHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMR--N  220 (438)
Q Consensus       147 ~~~~~~~~~~~~n~--~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~--~  220 (438)
                      .+.++.........  ..|....|..++.+++.+++.+..+.+  .+.    ++.+.|.+++.++..+..++.....  .
T Consensus        52 ~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~  127 (412)
T d1ajsa_          52 VVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKR----VGGVQSLGGTGALRIGAEFLARWYNGTN  127 (412)
T ss_dssp             HHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----EEEEEEEHHHHHHHHHHHHHHHHSSSSS
T ss_pred             HHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCccccccc----ceeecccchhhHHHHHHHHHHHHhhhcC
Confidence            44555443333222  236677888888888888876655542  222    3457788999888888777653221  1


Q ss_pred             hcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC-C--CCCccCHHHHHHhh---ccCcEEEEEecCCCCCccccC---
Q 013675          221 KRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-D--KEFRADVKAIKKYI---NRNTVLIVGSAPGFPHGIIDP---  291 (438)
Q Consensus       221 ~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~-~--~~~~~d~~~Le~~I---~~~t~~vv~~~~~~~tG~idd---  291 (438)
                      .+|   |+|+++++.++.+...++..|++.+.++. .  ..+..|.+++++.+   .++++++++++|+||||.+.+   
T Consensus       128 ~pG---d~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~  204 (412)
T d1ajsa_         128 NKD---TPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQ  204 (412)
T ss_dssp             CCC---SCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHH
T ss_pred             CCC---CEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHH
Confidence            356   99999999999999999999998665543 2  25678888877764   567899999999999999976   


Q ss_pred             HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeC-CCCCCCCCCCcEEEEEeccc
Q 013675          292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVD-VHKYGLAPKGTSVVLYRNRE  363 (438)
Q Consensus       292 i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s-~hK~~~~p~g~g~l~~r~~~  363 (438)
                      +++|+++|++||++++.|.+|..+...-................. .++..+ +.|++.....+|++......
T Consensus       205 ~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~s~sk~~~~~G~R~G~~~~~~~~  276 (412)
T d1ajsa_         205 WKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFE-LFCAQSFSKNFGLYNERVGNLTVVAKE  276 (412)
T ss_dssp             HHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC-EEEEEECTTTSCCGGGCEEEEEEECSS
T ss_pred             HHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccc-ccccccccccccCCCCCccccccchhH
Confidence            789999999999999999999766531000000000000001112 334444 44555566779998887553

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.47  E-value=8.5e-13  Score=130.40  Aligned_cols=208  Identities=11%  Similarity=0.079  Sum_probs=136.6

Q ss_pred             HHHHHHHHHhhccCC--CCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh
Q 013675          146 SLINEACSMFAHTNP--LHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK  221 (438)
Q Consensus       146 ~~~~~~~~~~~~~n~--~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~  221 (438)
                      ..+.++.........  ..|...+|..++.+++.+++.+..+..  +..    +..+.+.|++.++..++....   ...
T Consensus        50 ~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~  122 (412)
T d1yaaa_          50 PSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDR----VISVQSLSGTGALHISAKFFS---KFF  122 (412)
T ss_dssp             HHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----EEEEEEEHHHHHHHHHHHHHH---HHC
T ss_pred             HHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccc----eeEEecccchhHHHHHHHHHh---ccC
Confidence            344454433333222  346677888888888777776555432  222    222334444544444433322   224


Q ss_pred             cCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HH
Q 013675          222 RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQ  293 (438)
Q Consensus       222 ~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~  293 (438)
                      +|   |+|+++++.++.+...+...|.+++.+|..  .++..|.+.+++.+.   ++++++++++|+||||.+.+   ++
T Consensus       123 ~g---d~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~  199 (412)
T d1yaaa_         123 PD---KLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWV  199 (412)
T ss_dssp             TT---CCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHH
T ss_pred             CC---CEEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHH
Confidence            67   999999999999999999999999999985  367788988888875   45789999999999999976   78


Q ss_pred             HHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC-C-ccCCCCccEEEeCCCCC-CCCCCCcEEEEEeccc
Q 013675          294 ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP-F-DFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNRE  363 (438)
Q Consensus       294 ~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~-~-~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~  363 (438)
                      +|+++|++++++++.|.+|.++...-.......... . ......-.++..++.|. +..+..+|+++..++.
T Consensus       200 ~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~  272 (412)
T d1yaaa_         200 QIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTK  272 (412)
T ss_dssp             HHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCS
T ss_pred             HHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhh
Confidence            999999999999999999976653100000000000 0 00111224666777775 4566779998887654

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.45  E-value=1.6e-12  Score=127.15  Aligned_cols=252  Identities=13%  Similarity=0.046  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675          144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG  223 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G  223 (438)
                      +.+...+++..+-. +........+...+..++.+.+++++|.+..        ++.++|..|+..++.++...   ++|
T Consensus        64 v~~a~~~al~~yG~-gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~a--------ll~~sG~~An~~~i~~l~~~---~~~  131 (396)
T d2bwna1          64 VLAAMHEALEAVGA-GSGGTRNISGTTAYHRRLEAEIAGLHQKEAA--------LVFSSAYNANDATLSTLRVL---FPG  131 (396)
T ss_dssp             HHHHHHHHHHHHCS-CCCSBTTTBCCBHHHHHHHHHHHHHTTCSEE--------EEESCHHHHHHHHHHHHHHH---STT
T ss_pred             HHHHHHHHHHHhCC-CccccccccCCchHHHHHHHHHHHHhCCCce--------eeeecchHHHHHHHHHHhcc---cCC
Confidence            44444555555422 2223333444455666677789999999742        78888999999988876421   245


Q ss_pred             CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHH
Q 013675          224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELA  299 (438)
Q Consensus       224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la  299 (438)
                         +.|+.....|.++...++..+.+++.++.+     |++++++++.    .++++|+.....+..|.+-|+++|.++|
T Consensus       132 ---d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~  203 (396)
T d2bwna1         132 ---LIIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIA  203 (396)
T ss_dssp             ---CEEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHH
T ss_pred             ---CceeehhhhhhccchhhhccccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHh
Confidence               788889999999999999999999988765     6777777664    2467888899999999999999999999


Q ss_pred             HHcCCeEEEeccccchhhhhhhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC
Q 013675          300 LSHGTCLHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG  378 (438)
Q Consensus       300 ~~~~i~lhVD~a~gg~~~pf~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~  378 (438)
                      ++||++++||.+++-+++-   ..|..+- .+. ....+|+++.+..|. ++..| |+++. +++...........+   
T Consensus       204 ~~y~~~L~vDeAHs~Gv~G---~~G~G~~~~~~-~~~~~di~~gTlsKa-~g~~G-g~v~~-~~~~i~~l~~~~~~~---  273 (396)
T d2bwna1         204 EEFGALTYIDEVHAVGMYG---PRGAGVAERDG-LMHRIDIFNGTLAKA-YGVFG-GYIAA-SARMVDAVRSYAPGF---  273 (396)
T ss_dssp             HHHTCEEEEECTTTTTTSS---TTSCCHHHHHT-CGGGCSEEEEESSST-TCSCC-EEEEE-CHHHHHHHHHHCHHH---
T ss_pred             hhhcceeeeccceeeeeec---cccccchhhcC-Cceeeeeeeeccccc-ccccc-cccch-hHHHHHHHHhhcchh---
Confidence            9999999999999765541   1121100 011 123369999999999 45554 55554 455444322111110   


Q ss_pred             ccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          379 LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       379 ~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                           ...++-+.+.++++.++++.+..+...+..++...+.+++++.+.+.
T Consensus       274 -----ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~  320 (396)
T d2bwna1         274 -----IFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  320 (396)
T ss_dssp             -----HTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----hhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence                 00112223345566666665554555666777788899999988764

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.1e-12  Score=128.88  Aligned_cols=250  Identities=12%  Similarity=0.061  Sum_probs=152.6

Q ss_pred             CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675          162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY  239 (438)
Q Consensus       162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~  239 (438)
                      .|....|..++.+.+.+++.+..+..  +..    +..+.|.|++.+..+++.....   ..+|   ++|+++++.++.+
T Consensus        64 ~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~---~~~g---d~Vlvp~P~y~~y  133 (396)
T d2q7wa1          64 NYLGIDGIPEFGRCTQELLFGKGSALINDKR----ARTAQTPGGTGALRVAADFLAK---NTSV---KRVWVSNPSWPNH  133 (396)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----EEEEEESHHHHHHHHHHHHHHH---HSCC---CEEEEEESCCTHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHhhcCCcccccc----eeeeccchHHHHHHHHHHHHhh---cccc---eEEEEecCCCccc
Confidence            46677888888888888877665542  221    2335677777676665554432   1367   8999999999999


Q ss_pred             HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhh---ccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecc
Q 013675          240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYI---NRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLC  311 (438)
Q Consensus       240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I---~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a  311 (438)
                      ...++..|.+++.+|...  ++..+...+++..   .++++++++++|+||||.+.+   +++|+++|++|+++++.|.+
T Consensus       134 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~  213 (396)
T d2q7wa1         134 KSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFA  213 (396)
T ss_dssp             HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred             hHHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEecc
Confidence            999999999999999863  5556776666654   457899999999999999976   66899999999999999999


Q ss_pred             ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCC-CCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675          312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP  390 (438)
Q Consensus       312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK-~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~  390 (438)
                      |.++...- ..... ..........-..+..++.| ++..+..+|++....................       ....-.
T Consensus       214 Y~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  284 (396)
T d2q7wa1         214 YQGFARGL-EEDAE-GLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAA-------IRANYS  284 (396)
T ss_dssp             CTTSSSCH-HHHTH-HHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHH-------HHTTTS
T ss_pred             ccccccCC-ccCch-HhhhhhhhcccccccccccccccccCCCccccccchhHHHHHHHhhhhhhhh-------hhcccc
Confidence            98765310 00000 00000001112344444445 4555667999888765432211100000000       000000


Q ss_pred             CchHHHHHHHHHHH--------cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          391 GGLIAGAWAALMSL--------GQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       391 ~~~ia~~~aal~~~--------g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      .....++.++...+        ..+.+++..++..++++.+.+.|+++
T Consensus       285 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  332 (396)
T d2q7wa1         285 NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK  332 (396)
T ss_dssp             SCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            00111222222222        23456666777888888899988875

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=7.4e-14  Score=134.49  Aligned_cols=241  Identities=10%  Similarity=-0.149  Sum_probs=156.3

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a  242 (438)
                      .++.+.++.+++++.+++++|.+++.   .+  ++++|++++++.++.....    .++   +.+++....+..  +...
T Consensus        40 Rs~ef~~l~~~~r~~l~~l~~~~~~~---~v--~~~~gs~t~~~~a~~~~~~----~~~---~~v~~~~~~~~~~~~~~~  107 (360)
T d1bjna_          40 RGKEFIQVAEEAEKDFRDLLNVPSNY---KV--LFCHGGGRGQFAAVPLNIL----GDK---TTADYVDAGYWAASAIKE  107 (360)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCTTE---EE--EEESSHHHHHHHHHHHHHC----TTC---CEEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCC---EE--EEECCchHHHHhhhhhccc----ccc---cccceecccchhhhhHHH
Confidence            47888999999999999999997653   14  7888888888776654431    223   455555444333  5566


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      ++..|..++.+..+.+...+.+.+++.+..+++++++++.+|.||...|+.++.  ++.+++.+++|++.+..       
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~-------  178 (360)
T d1bjna_         108 AKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTIL-------  178 (360)
T ss_dssp             HTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTT-------
T ss_pred             HhhcCccceeeccccCCCcchhhhhhhhccCCceeEEEecccccccCcccccee--cccccceeeeeeecccc-------
Confidence            677788777777666667788888888888999888889999999998887664  56788999999997522       


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCC-CCCchHHHHHHHH
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS-RPGGLIAGAWAAL  401 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs-r~~~~ia~~~aal  401 (438)
                            ..++...++|+..+++||++++|+|.++++++.+............+............. .......+..+.+
T Consensus       179 ------~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (360)
T d1bjna_         179 ------SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFK  252 (360)
T ss_dssp             ------SSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH
T ss_pred             ------ceeeeeccceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHH
Confidence                  344555678999999999998888888877765543322111100000000000001111 1112223333334


Q ss_pred             HHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675          402 MSLGQEGYLENTKAIMEVSESIQKGLVLFPM  432 (438)
Q Consensus       402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g  432 (438)
                      ......+.....++....+.++.+.+.....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (360)
T d1bjna_         253 WLKANGGVAEMDKINQQKAELLYGVIDNSDF  283 (360)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Confidence            3344456666777777777777777665533

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=1.5e-12  Score=127.56  Aligned_cols=203  Identities=12%  Similarity=0.124  Sum_probs=132.1

Q ss_pred             HHHHHHHHhhccCC-CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675          147 LINEACSMFAHTNP-LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT  225 (438)
Q Consensus       147 ~~~~~~~~~~~~n~-~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~  225 (438)
                      .+.++......... ..|....|..++.+.+.+++.+.-+.....     ..++|.||+.+..+++.....   ..+|  
T Consensus        48 ~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~---~~~g--  117 (394)
T d2ay1a_          48 AVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETT-----ATLATVGGTGALRQALELARM---ANPD--  117 (394)
T ss_dssp             HHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGE-----EEEEEEHHHHHHHHHHHHHHH---HCTT--
T ss_pred             HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccc-----cceeccCchHHHHHHHHHhhh---cCCc--
Confidence            34444444333322 346667788888888888776655543222     236677777665555443321   1366  


Q ss_pred             CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhh---ccCcEEEEEecCCCCCccccC---HHHHHH
Q 013675          226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYI---NRNTVLIVGSAPGFPHGIIDP---IQELGE  297 (438)
Q Consensus       226 ~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I---~~~t~~vv~~~~~~~tG~idd---i~~I~~  297 (438)
                       ++|+++.+.++.+...++..|.+++.+|+..  ++..+.+++++..   .+++.++++++|+||||.+.+   +++|++
T Consensus       118 -d~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~  196 (394)
T d2ay1a_         118 -LRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIAS  196 (394)
T ss_dssp             -CCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred             -eEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence             8999999999999999999999999999853  5556666665554   456889999999999999976   778999


Q ss_pred             HHHHcCCeEEEeccccchhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCC-CCCCCCCcEEEEEeccc
Q 013675          298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNRE  363 (438)
Q Consensus       298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK-~~~~p~g~g~l~~r~~~  363 (438)
                      +|++++++++.|.+|.++...--...-  .+.. ...... ..+..++.| ++.....+|++......
T Consensus       197 la~~~~~~ii~De~Y~~l~~~~~~~~~--~~~~~~~~~~~-~~~~~s~sk~~~~~G~R~G~~~~~~~~  261 (394)
T d2ay1a_         197 ILEKTGALPLIDLAYQGFGDGLEEDAA--GTRLIASRIPE-VLIAASCSKNFGIYRERTGCLLALCAD  261 (394)
T ss_dssp             HHHHHTCEEEEEECCTTSSSCHHHHHH--HHHHHHHHCSS-EEEEEECTTTTTCGGGCEEEEEEECSS
T ss_pred             HhhcceEEEEEeccchhhcccccccch--hhhhhhhhccc-ccccccccccccCCcccccchhhchhH
Confidence            999999999999999876531000000  0000 001112 233334444 44455678888877653

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.2e-12  Score=128.53  Aligned_cols=206  Identities=9%  Similarity=-0.037  Sum_probs=133.9

Q ss_pred             HHHHHHHHHhhccC--CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh
Q 013675          146 SLINEACSMFAHTN--PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK  221 (438)
Q Consensus       146 ~~~~~~~~~~~~~n--~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~  221 (438)
                      ..+.++........  ...|....|..++.+.+.+++.+..+.+  ++.    +  +.+.+++.+...++....... ..
T Consensus        47 ~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~----i--~~~~~~~~~~~~~l~~~~~~~-~~  119 (397)
T d3tata_          47 QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQR----V--ATIQTLGGSGALKVGADFLKR-YF  119 (397)
T ss_dssp             HHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTC----E--EECCBSHHHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCc----E--EEecCchhHHHHHHHHHHhhh-cC
Confidence            45555554433322  2336677788888887777766554432  333    4  444544544333333322111 13


Q ss_pred             cCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HH
Q 013675          222 RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQ  293 (438)
Q Consensus       222 ~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~  293 (438)
                      +|   |+|+++++.++.+...++.+|.+++.+|++.  ++..|.+++.+.+.   ++++++++++|+||||.+.+   ++
T Consensus       120 pg---d~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~  196 (397)
T d3tata_         120 PE---SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWD  196 (397)
T ss_dssp             SS---CCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHH
T ss_pred             CC---CcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHH
Confidence            77   9999999999999999999999999999964  56788888877754   56889999999999999976   67


Q ss_pred             HHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEeccc
Q 013675          294 ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNRE  363 (438)
Q Consensus       294 ~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~  363 (438)
                      +|.++|++|+++++.|.+|..+...- +.... ..........-.++..++.|. +..+..+|++......
T Consensus       197 ~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~-~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~  265 (397)
T d3tata_         197 AVIEILKARELIPFLDIAYQGFGAGM-EEDAY-AIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCED  265 (397)
T ss_dssp             HHHHHHHHTTCCCEECBSCTTSSSCH-HHHHH-HHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSS
T ss_pred             HHHHHHhhcCeeEEeehhhhhhccCC-cccch-hhhhhhhcCCceEEEecCcccccccCccccccccchhH
Confidence            89999999999999999998764310 00000 000000111123566677786 3334568988877554

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.35  E-value=8.3e-13  Score=127.81  Aligned_cols=170  Identities=15%  Similarity=0.055  Sum_probs=121.1

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a  242 (438)
                      .++.+.++.+++++.+++++|.+.+.   .+  ++++|+++++..++.....    .+|   +.+++....+..  +.+.
T Consensus        42 Rs~ef~~~~~~~r~~l~~l~~~~~~~---~i--~~~~gs~t~~~ea~~~~l~----~~~---~~~l~~~~g~~~~~~~~~  109 (361)
T d2c0ra1          42 RGAVYEAVHNEAQARLLALLGNPTGY---KV--LFIQGGASTQFAMIPMNFL----KEG---QTANYVMTGSWASKALKE  109 (361)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTCCSSE---EE--EEESSHHHHHHHHHHHHHC----CTT---CEEEEEECSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCC---EE--EEECCCchHHHHHHHhccc----cCC---CceEEEeechhhhhhhhh
Confidence            47889999999999999999997653   14  7777777776665544321    234   455444433322  6678


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      +...|..++.++.+.....+++++++.+..++..    +.++.||.+.|+++|.++|+++|++++||++++.+..     
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~-----  180 (361)
T d2c0ra1         110 AKLIGDTHVAASSEASNYMTLPKLQEIQLQDNAA----YLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSR-----  180 (361)
T ss_dssp             HHHHSCEEEEEECGGGTTCSCCCGGGCCCCTTEE----EEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSS-----
T ss_pred             hhhcCceeeeeccccccccchhhhhhhcccCcce----EEEEecccceecceEEEeeccCCceEEEEeecccccc-----
Confidence            8888999999998888888999999888776643    2345689999999999999999999999999764433     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccc
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREI  364 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~  364 (438)
                            +++...+++|  .+++||.++.|++.++ ++..+..
T Consensus       181 ------~id~~~~di~--~~s~~k~~~~~~~~~~-~~~~~~~  213 (361)
T d2c0ra1         181 ------PFDLNQFGLV--YAGAQKNLGPSGVTVV-IVREDLV  213 (361)
T ss_dssp             ------CCCGGGCSEE--EEETTTTTCCSSCEEE-EEEGGGS
T ss_pred             ------ccccccceeE--EEecccccccccCcEE-EEEhHHh
Confidence                  4666655555  4567888555555444 5544433

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.35  E-value=7.8e-13  Score=127.65  Aligned_cols=167  Identities=9%  Similarity=-0.016  Sum_probs=115.3

Q ss_pred             cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHH
Q 013675          165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA  242 (438)
Q Consensus       165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a  242 (438)
                      .++.+.++.+++++.+++++|.+++.     ..++++|+++++..+......    .++   +.+++....|.+  +...
T Consensus        42 Rs~~~~~~~~~~r~~l~~l~~~~~~~-----~i~~~~gt~~~~~~~~~~~~~----~~~---~~v~~~~~g~~~~~~~~~  109 (360)
T d1w23a_          42 RSQSYEEVHEQAQNLLRELLQIPNDY-----QILFLQGGASLQFTMLPMNLL----TKG---TIGNYVLTGSWSEKALKE  109 (360)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCTTE-----EEEEESSHHHHHHHHHHHHHC----CTT---CEEEEEECSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCC-----EEEEeCCcHHHHHHHHHhhhc----ccC---cccceeeccchhhhhHHH
Confidence            47888999999999999999998764     337788887777766555432    123   555555444333  4555


Q ss_pred             HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675          243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK  322 (438)
Q Consensus       243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~  322 (438)
                      +...+...+.+........++++++......+    .++.+|.||.+.|+++|+++|+++|++++||++++.+..     
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~-----  180 (360)
T d1w23a_         110 AKLLGETHIAASTKANSYQSIPDFSEFQLNEN----DAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSR-----  180 (360)
T ss_dssp             HHTTSEEEEEEECGGGTSCSCCCGGGCCCCTT----EEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSS-----
T ss_pred             HHHhhhcceeeccccccccchhhhhhcccccc----cceeEecCCccccceeeeeccccceeeEEeecccccccc-----
Confidence            66667766666554333445555555544433    234455689999999999999999999999999754333     


Q ss_pred             cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEe
Q 013675          323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR  360 (438)
Q Consensus       323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r  360 (438)
                            ++|+..+++|+.+++.||+  .|+|.|+++.+
T Consensus       181 ------~id~~~~~vd~~~~~~~k~--~~~~~~~~~~~  210 (360)
T d1w23a_         181 ------PLKVNQFGMIYAGAQKNLG--PSGVTVVIVKK  210 (360)
T ss_dssp             ------CCCGGGCSEEEEETTTTTS--CTTCEEEEEEH
T ss_pred             ------ccccccccceEEeeccccc--cCCcceeeEec
Confidence                  5788889999999998886  34445554443

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=5.3e-11  Score=116.26  Aligned_cols=218  Identities=17%  Similarity=0.138  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC---
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN---  247 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G---  247 (438)
                      .+.++.+.+.+........    +  .++++||||+..|++.+|.+.    |  +..|+..... |....-+...-|   
T Consensus        80 ~~~~la~~l~~~~~~~~~~----v--~f~~sGseA~e~Aik~Ar~~t----~--r~~ii~~~~~yHG~t~~~~~~s~~~~  147 (387)
T d1vefa1          80 MRGEFYRTLTAILPPELNR----V--FPVNSGTEANEAALKFARAHT----G--RKKFVAAMRGFSGRTMGSLSVTWEPK  147 (387)
T ss_dssp             HHHHHHHHHHHTSCTTEEE----E--EEESSHHHHHHHHHHHHHHHH----S--CCEEEEETTCCCCSSHHHHHTCCCHH
T ss_pred             hHHHHHHHhhhhcccccee----e--ccccCchHHHHHHHHHHHhhc----c--cceecccccCCCCCccceEeccCCcc
Confidence            3444445555554443332    4  889999999999999999753    2  2466665554 444333333222   


Q ss_pred             ---------cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccc
Q 013675          248 ---------IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       248 ---------i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                               -.+..+|.+     |.+.|++.+++++.+|++.......|.+.+    +++|.++|++||+.+++|+++.|
T Consensus       148 ~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG  222 (387)
T d1vefa1         148 YREPFLPLVEPVEFIPYN-----DVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTG  222 (387)
T ss_dssp             HHGGGCSCSSCEEEECTT-----CHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             ccCCCCCCCCCceEeCCC-----CHHHHHHhcCCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccc
Confidence                     145566644     789999999999999998877776787766    89999999999999999999988


Q ss_pred             hhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675          315 FVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG  392 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~  392 (438)
                      |..     .|.   .+.+...|  .|+++++  |.+.++...+.++.+++.....    .+.          ..|+-..+
T Consensus       223 fgR-----~G~---~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~~~~~~~----~~~----------~~g~T~~g  278 (387)
T d1vefa1         223 MGR-----TGK---RFAFEHFGIVPDILTLA--KALGGGVPLGVAVMREEVARSM----PKG----------GHGTTFGG  278 (387)
T ss_dssp             TTT-----TSS---SSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHHTS----CTT----------SSCCSSTT
T ss_pred             cCc-----cCC---CcccccCCcCCceeeec--ccCCCCccccccccceeeeecc----ccC----------CccccCCC
Confidence            743     222   12222223  3888887  6644444556666665432211    111          11222221


Q ss_pred             hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ...++.+++..+..-.-.+..++..++.+++.+.|+++
T Consensus       279 nPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l  316 (387)
T d1vefa1         279 NPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI  316 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTS
T ss_pred             CcchhhhcccchhhcccccccchHhhhhHHHHHHHHhc
Confidence            22244444433322222455677778888999999875

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=5e-12  Score=119.64  Aligned_cols=169  Identities=21%  Similarity=0.204  Sum_probs=114.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH-
Q 013675          164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-  242 (438)
Q Consensus       164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a-  242 (438)
                      ...|...++|+    .+++++|.+.      +  ++++|||+|+.+|+++++.     .|   +.+++....|.+.... 
T Consensus        31 g~~p~~~~le~----~lA~~~G~~~------~--~~~~sGt~A~~~al~a~~~-----~g---~~~~~~~~~~~~~~~~~   90 (343)
T d1m6sa_          31 GEDPTINELER----LAAETFGKEA------A--LFVPSGTMGNQVSIMAHTQ-----RG---DEVILEADSHIFWYEVG   90 (343)
T ss_dssp             TCCHHHHHHHH----HHHHHTTCSE------E--EEESCHHHHHHHHHHHHCC-----TT---CEEEEETTCHHHHSSTT
T ss_pred             CCCHHHHHHHH----HHHHHHCCCe------E--EEeCCHHHHHHHHHHHHhc-----cC---Cceeccccccceeeecc
Confidence            34577776765    5788999763      2  8999999999999998873     56   8899998888776543 


Q ss_pred             --HhhcCcEEEEeeCCCCCccCHHHHHHhhccC------cE-EEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEec
Q 013675          243 --AQYFNIKLWRVPVDKEFRADVKAIKKYINRN------TV-LIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL  310 (438)
Q Consensus       243 --~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~------t~-~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~  310 (438)
                        +...+..++.++.+ .+..|++.+++.++..      +. +++...++++.|.+.|   +++|+++|+++|+++|+|+
T Consensus        91 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~  169 (343)
T d1m6sa_          91 AMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDG  169 (343)
T ss_dssp             HHHHHTCCEEEEECEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             cccccccceeeccccc-cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecc
Confidence              33334555555543 6778999999999753      33 4555566677777655   5688888899999999999


Q ss_pred             cccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEe
Q 013675          311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR  360 (438)
Q Consensus       311 a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r  360 (438)
                      +++++..+..  ..    .........+..+++.+|.+.+..+ +.+...
T Consensus       170 a~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~  212 (343)
T d1m6sa_         170 ARIFNASIAS--GV----PVKEYAGYADSVMFCLSKGLCAPVG-SVVVGD  212 (343)
T ss_dssp             TTHHHHHHHH--CC----CHHHHHHTCSEEEEESSSTTCCSSC-EEEEEC
T ss_pred             cccccccccc--cc----chhhhcccccccccccccccccccc-cccccc
Confidence            9988776421  11    1111122346777777777555554 443433

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.25  E-value=3.7e-11  Score=112.03  Aligned_cols=232  Identities=13%  Similarity=0.078  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc--C
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF--N  247 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~--G  247 (438)
                      .+..+++++.+++++|.++++    +  ++|+|||+||++++.++..     ++   ++++++...|.++.......  +
T Consensus        34 ~~~~~~lr~~ia~~~g~~~~~----v--~~tsggtean~~a~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~   99 (340)
T d1svva_          34 DSHCAKAARLIGELLERPDAD----V--HFISGGTQTNLIACSLALR-----PW---EAVIATQLGHISTHETGAIEATG   99 (340)
T ss_dssp             SHHHHHHHHHHHHHHTCTTSE----E--EEESCHHHHHHHHHHHHCC-----TT---EEEEEETTSHHHHSSTTHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCCcce----E--EEcCCHHHHHHHHHHHHhh-----hc---cccccccccceeeeecccccccc
Confidence            455678889999999998765    5  8999999999999998763     55   68888888888765544333  3


Q ss_pred             cEEEEeeCCCCCccCHHHHHHhhcc------C-cEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675          248 IKLWRVPVDKEFRADVKAIKKYINR------N-TVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       248 i~v~~v~~~~~~~~d~~~Le~~I~~------~-t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      .....++.. ....+.+....+...      . +..++.+.++ +.|.+   +++..+.++|+++|.++|+|.++++...
T Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~  177 (340)
T d1svva_         100 HKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTT-EVGTQYTKQELEDISASCKEHGLYLFLDGARLASAL  177 (340)
T ss_dssp             CCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSC-TTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHH
T ss_pred             eeeeecccc-cccccchhHHHHhhhhhcccCCcceeeeecccc-cccccccHHHhhhhhcccccccceeeeeccceeeee
Confidence            333333322 223333333333321      1 3344444444 45555   3467788999999999999999987766


Q ss_pred             hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675          318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA  397 (438)
Q Consensus       318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~  397 (438)
                      +...   . ....+......+.....++|.+..+. .+. .............. ....         .+..+... +..
T Consensus       178 ~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~---------~~~~~~~~-~~~  240 (340)
T d1svva_         178 SSPV---N-DLTLADIARLTDMFYIGATKAGGMFG-EAL-IILNDALKPNARHL-IKQR---------GALMAKGW-LLG  240 (340)
T ss_dssp             TSTT---C-CCCHHHHHHHCSEEEEECTTTTCSSC-EEE-EECSGGGCTTHHHH-HHHT---------TCCCTTTH-HHH
T ss_pred             cccc---c-ccccccccccceeeecCCcccccccc-ccc-cccchhhhhhhhhh-cccc---------cCccchhh-HHH
Confidence            4211   0 10111111223677777777644433 222 33322221111000 0000         11122222 222


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675          398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP  435 (438)
Q Consensus       398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  435 (438)
                      .+++..+...++....++...+++++.+.|++. |+++
T Consensus       241 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~  277 (340)
T d1svva_         241 IQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIRL  277 (340)
T ss_dssp             HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-CCee
Confidence            233334556677888888999999999999885 6654

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.24  E-value=2.2e-11  Score=120.28  Aligned_cols=220  Identities=15%  Similarity=0.152  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH---HhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675          170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR---NKRGITRPEMIIPVSAHSAYDKAAQYF  246 (438)
Q Consensus       170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~---~~~G~~~~~Viv~~~~h~s~~~a~~~~  246 (438)
                      .++++++++.- +..|-...+ +..|  ++++|+||++.+++.++.....   ..+|   ++||++.+.|+.+...++++
T Consensus       103 ~~L~~~i~~lh-~~~gna~t~-~~~I--vvG~Gsteli~~~~~AL~~~~~~~~~~pg---~~Vv~~~P~y~~Y~~~~~~~  175 (425)
T d2hoxa1         103 FELEKTIKELH-EVVGNAAAK-DRYI--VFGVGVTQLIHGLVISLSPNMTATPDAPE---SKVVAHAPFYPVFREQTKYF  175 (425)
T ss_dssp             HHHHHHHHHHH-HHHTCBCCT-TCEE--EEESHHHHHHHHHHHHHSCCTTTCTTSCC---EEEEECSSCCHHHHHHHHHS
T ss_pred             HHHHHHHHHHH-hhhCCCCCC-CCEE--EECCCHHHHHHHHHHHhccccccccCCCC---CEEEEecCccccHHHHHHHc
Confidence            35555555433 344422111 2236  8999999999999999852100   0144   79999999999999999999


Q ss_pred             CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC
Q 013675          247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP  326 (438)
Q Consensus       247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~  326 (438)
                      |.+...      +..|.++++++++++|+++++++||||||.+..       +..+++.+++|.+|.+...         
T Consensus       176 ~~~~~~------~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f---------  233 (425)
T d2hoxa1         176 DKKGYV------WAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHY---------  233 (425)
T ss_dssp             CBTTEE------EEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTT---------
T ss_pred             CCCCCc------cCCCHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccc---------
Confidence            875443      456788999999999999999999999998732       2235889999999853211         


Q ss_pred             CCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675          327 IPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG  405 (438)
Q Consensus       327 ~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g  405 (438)
                      . ++.... .-+++..+..|. +.++..+|++++.++.+.+........+..+.        +     ..++.+++..+.
T Consensus       234 ~-~~~~~~-~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~v--------s-----~~~Q~aa~~aL~  298 (425)
T d2hoxa1         234 T-PIKYKA-DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGT--------P-----RETQLRSLKVLK  298 (425)
T ss_dssp             S-CCCSCB-CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSC--------C-----HHHHHHHHHHHH
T ss_pred             c-chhhhc-CCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccC--------C-----HHHHHHHHHHhh
Confidence            1 111111 126778888999 34556799988888766543221111111100        0     112333333221


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675          406 -------------QEGYLENTKAIMEVSESIQKGLVLFPMF  433 (438)
Q Consensus       406 -------------~~g~~~~~~~~~~~a~~l~~~L~~~~g~  433 (438)
                                   .+-++...++..+..+++.+.|++.+++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~  339 (425)
T d2hoxa1         299 EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRF  339 (425)
T ss_dssp             HHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence                         1234455666777778888888876554

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.3e-09  Score=106.84  Aligned_cols=216  Identities=18%  Similarity=0.132  Sum_probs=133.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEecCC-CcCcHHHHHhhcC----
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVS-AHSAYDKAAQYFN----  247 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~~~-~h~s~~~a~~~~G----  247 (438)
                      +..+.++++.+.+.      +  .++++||+|+..|++.+|.+....++.  .+..++.... .|.....+....+    
T Consensus        87 ~~~~~~~~~~~~~~------v--~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~  158 (404)
T d2byla1          87 EYEEYITKLFNYHK------V--LPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTS  158 (404)
T ss_dssp             HHHHHHHHHHTCSE------E--EEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHH
T ss_pred             HHHHhhhhcccccc------c--ccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCccc
Confidence            34446777776642      4  899999999999999999876543322  1335554433 4443333332221    


Q ss_pred             --------cEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccc
Q 013675          248 --------IKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGG  314 (438)
Q Consensus       248 --------i~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg  314 (438)
                              -.+..+|.+     |++++++++.+ +..+|++.......|.+.+    +++|.++|++||+.+++|+++.|
T Consensus       159 ~~~~~p~~~~~~~~p~~-----d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG  233 (404)
T d2byla1         159 YDGFGPFMPGFDIIPYN-----DLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG  233 (404)
T ss_dssp             HTTSCSCCTTEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             ccCCCCCCCCeeEeccc-----CHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccc
Confidence                    134555543     78999999965 5777888776777787755    89999999999999999999988


Q ss_pred             hhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCccCCC-C
Q 013675          315 FVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR-P  390 (438)
Q Consensus       315 ~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr-~  390 (438)
                      |..     .|.   .+.+...|+  |+++++  |.+.++ ...|.++.+++ +...       +.      +...++- .
T Consensus       234 fgR-----~G~---~~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~~~~~-i~~~-------~~------~~~~~~T~~  289 (404)
T d2byla1         234 LAR-----TGR---WLAVDYENVRPDIVLLG--KALSGGLYPVSAVLCDDD-IMLT-------IK------PGEHFSTYG  289 (404)
T ss_dssp             TTT-----TSS---SSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHH-HHTT-------SC------TTSSCCSST
T ss_pred             ccc-----ccc---cchhhhcCCCCCEEEEC--chhhCCCccceeeeechh-hhhc-------cC------CCCCCcCCC
Confidence            754     222   233444454  888776  664443 45677777643 2211       00      0111111 2


Q ss_pred             Cc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          391 GG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       391 ~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      +.  ..++..++|+.+.+   .+..++..++.+++.+.|+++
T Consensus       290 gnpl~~aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~l~~l  328 (404)
T d2byla1         290 GNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMKL  328 (404)
T ss_dssp             TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTS
T ss_pred             cCHHHHHHHHHHHHHHHh---cCchhhhhHhhHHHHHHHHhh
Confidence            22  13344555555543   345566677788888888775

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.11  E-value=2.3e-09  Score=105.71  Aligned_cols=161  Identities=19%  Similarity=0.195  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHH-------h
Q 013675          173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAA-------Q  244 (438)
Q Consensus       173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~-------~  244 (438)
                      ..++.+.+.++.+... .    +  .++++|+||+..|++.+|.+.    |  +.+|+.-..+|.. ..-+.       .
T Consensus        94 ~~~la~~~~~~~~~~~-~----v--~f~~sGseA~e~Alk~ar~~t----~--r~~ii~~~~~yHG~t~~~~~~~~~~~~  160 (427)
T d2gsaa_          94 ENVLAEMVNDAVPSIE-M----V--RFVNSGTEACMAVLRLMRAYT----G--RDKIIKFEGCYHGHADMFLVKAGSGVA  160 (427)
T ss_dssp             HHHHHHHHHHHSTTCS-E----E--EEESSHHHHHHHHHHHHHHHH----C--CCEEEEETTCCCCSCGGGCSSCCHHHH
T ss_pred             HHHHHHHHHhhCCccc-c----c--cccCCcHHHHHHHHHHHHHhc----C--CCeEEEEecccccCcceeeeecCCccc
Confidence            4455666777765432 2    4  799999999999999998752    2  3567765554432 11111       1


Q ss_pred             hcCc------------EEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCe
Q 013675          245 YFNI------------KLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTC  305 (438)
Q Consensus       245 ~~Gi------------~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~  305 (438)
                      ..++            +...+|     .-|++++++.+++   +.++|++.......|.+.|    +++|.++|++||++
T Consensus       161 ~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~l  235 (427)
T d2gsaa_         161 TLGLPSSPGVPKKTTANTLTTP-----YNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL  235 (427)
T ss_dssp             HTTCCSCSSSCHHHHTTEEEEC-----TTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCE
T ss_pred             ccCCCCCCCCcccCccceeccC-----cchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhcee
Confidence            1111            222222     2489999999975   5678888877777788877    99999999999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +++|+++.|+-.      |.   -+.....|  .|+++++-  .+.+....|.++.+++
T Consensus       236 lI~DEv~tG~r~------g~---~~~~~~~gi~PDi~~~gK--~lggG~p~~a~~~~~~  283 (427)
T d2gsaa_         236 LVFDEVMTGFRI------AY---GGVQEKFGVTPDLTTLGK--IIGGGLPVGAYGGKRE  283 (427)
T ss_dssp             EEEECTTTBTTT------BT---TCHHHHTTCCCSEEEECG--GGGTTSCCEEEEECHH
T ss_pred             eeecccccccee------cc---cchHHhcCCCHHHHhhhh--ccCCCcceeeeeehHH
Confidence            999999987622      11   11122222  38988874  4333344466666654

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.3e-08  Score=100.24  Aligned_cols=170  Identities=19%  Similarity=0.118  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc--
Q 013675          172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI--  248 (438)
Q Consensus       172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi--  248 (438)
                      .+.++.+.+.+++..+...   .+  .++++||||+..|++.+|.+..      +.+|+.-..+ |....-+....|.  
T Consensus        84 ~~~~la~~l~~~~p~~~~~---~v--~f~~sGseA~e~Alk~ar~~t~------r~~ii~~~~~yHG~t~~~~~~t~~~~  152 (425)
T d1sffa_          84 PYLELCEIMNQKVPGDFAK---KT--LLVTTGSEAVENAVKIARAATK------RSGTIAFSGAYHGRTHYTLALTGKVN  152 (425)
T ss_dssp             HHHHHHHHHHHHSSCSSCE---EE--EEESSHHHHHHHHHHHHHHHHT------CCEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred             HHHHHHHHHHhhhhhcccc---ee--eeeccccchhhhHHHHhhhhhc------ccceEeecCCCcCccccchhhcCCCC
Confidence            4456677888888544322   14  7899999999999999997532      2467665554 4444434333321  


Q ss_pred             -----------EEEEeeCCC--CCc--cC-HHHHHHhh-----ccCcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675          249 -----------KLWRVPVDK--EFR--AD-VKAIKKYI-----NRNTVLIVGSAPGFPHGIIDP----IQELGELALSHG  303 (438)
Q Consensus       249 -----------~v~~v~~~~--~~~--~d-~~~Le~~I-----~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~  303 (438)
                                 .....+.+.  ...  .+ ....++.+     ..++.+|++.......|.+.|    ++.|.++|++||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g  232 (425)
T d1sffa_         153 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG  232 (425)
T ss_dssp             TTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHT
T ss_pred             cccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcC
Confidence                       122222211  111  10 11111111     234678888877776787654    889999999999


Q ss_pred             CeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      +.+++|+++.|+..     .|.   .+.+...|+  |+++++  |.+.++...|+++.+++
T Consensus       233 illI~DEV~tG~gR-----~g~---~~a~~~~gv~PDi~~~g--K~l~gG~P~~av~~~~~  283 (425)
T d1sffa_         233 IMLIADEVQSGAGR-----TGT---LFAMEQMGVAPDLTTFA--KSIAGGFPLAGVTGRAE  283 (425)
T ss_dssp             CEEEEECTTTTTTT-----TSS---SSGGGGTTSCCSEEEEC--GGGGTSSCCEEEEEEHH
T ss_pred             ceEEeccccccCCC-----cch---hhHHHhcCCCccceecc--cccCCCcceEEEEEcHH
Confidence            99999999988653     121   122233333  888876  77555566888888865

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.99  E-value=6.4e-08  Score=94.46  Aligned_cols=164  Identities=18%  Similarity=0.150  Sum_probs=101.0

Q ss_pred             HHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC--CCeEEecCCCcCc-HHHHHhhcCc----
Q 013675          176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSAHSA-YDKAAQYFNI----  248 (438)
Q Consensus       176 ~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~--~~~Viv~~~~h~s-~~~a~~~~Gi----  248 (438)
                      +.+.++++.+.+.      +  .++.+|++|+..|++.+|.+........  ...++.....+.. ........+.    
T Consensus        86 ~~~~~~~~~~~~~------v--~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~  157 (404)
T d1z7da1          86 CERYLTNLLGYDK------V--LMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT  157 (404)
T ss_dssp             HHHHHHHHHTCSE------E--EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred             HHHhhhhccccce------e--eeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccc
Confidence            4455667776642      3  7899999999999999998765432111  2245444443322 2222222211    


Q ss_pred             --------EEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccch
Q 013675          249 --------KLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGF  315 (438)
Q Consensus       249 --------~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~  315 (438)
                              .+..+|.     -+.++++..+.+ ++++|++.......|.+.|    +++|.++|++||+++++|+++.||
T Consensus       158 ~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGf  232 (404)
T d1z7da1         158 SNFGPFAPQFSKVPY-----DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGL  232 (404)
T ss_dssp             --------CEEEECT-----TCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             cCCCCCCcccccccc-----chHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCC
Confidence                    2223332     267788887765 5788888877777888766    899999999999999999999887


Q ss_pred             hhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecc
Q 013675          316 VLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNR  362 (438)
Q Consensus       316 ~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~  362 (438)
                      ..     .|.   .+.+...|+  |+++++  |.+.++ ..+|+++.+++
T Consensus       233 gR-----tG~---~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~~  272 (404)
T d1z7da1         233 GR-----TGK---LLCVHHYNVKPDVILLG--KALSGGHYPISAVLANDD  272 (404)
T ss_dssp             TT-----TSS---SSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHH
T ss_pred             Cc-----ccc---cccccccCCCCCEEEEc--ccccCCCCCcccccchHH
Confidence            53     121   233333343  888876  664333 44677777654

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=7.1e-08  Score=94.82  Aligned_cols=229  Identities=14%  Similarity=0.100  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc----
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI----  248 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi----  248 (438)
                      .++.+.+++....+.+.    +  .++.+||||+..|++.+|.+... +|..+++|+....+ |.....+....|-    
T Consensus        89 ~~l~~~l~~~~~~~~~~----v--~f~~sGseA~e~A~k~ar~~~~~-~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~  161 (429)
T d1s0aa_          89 IELCRKLVAMTPQPLEC----V--FLADSGSVAVEVAMKMALQYWQA-KGEARQRFLTFRNGYHGDTFGAMSVCDPDNSM  161 (429)
T ss_dssp             HHHHHHHHHHSCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHH-HTCCCCEEEEETTCCCCSSHHHHTTSCTTTTT
T ss_pred             HHHHHHHHhhhccCcce----e--eeccccccchhhhhhhhhheeec-ccccccEEEEecCCccccchhhhhhcCCcccc
Confidence            34455677776655443    4  78999999999999999976554 34444577766655 4444333333221    


Q ss_pred             ---------EEEEeeCCC------CCccCHHHHHHhhc---cCcEEEEEecCC-CCCcccc-C---HHHHHHHHHHcCCe
Q 013675          249 ---------KLWRVPVDK------EFRADVKAIKKYIN---RNTVLIVGSAPG-FPHGIID-P---IQELGELALSHGTC  305 (438)
Q Consensus       249 ---------~v~~v~~~~------~~~~d~~~Le~~I~---~~t~~vv~~~~~-~~tG~id-d---i~~I~~la~~~~i~  305 (438)
                               .....|...      ...-+++++++.+.   +++.+|++.-.. +.-|... |   +++|.++|++||+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gil  241 (429)
T d1s0aa_         162 HSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL  241 (429)
T ss_dssp             GGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred             ccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcc
Confidence                     222333221      12234555555543   356777776543 3334433 2   89999999999999


Q ss_pred             EEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCC
Q 013675          306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVS  382 (438)
Q Consensus       306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~  382 (438)
                      +++|+++.||..     .|.   .+.+...++  |+++++  |.+ .|....|+++.+++ +.+....    ...+.   
T Consensus       242 lI~DEV~tGfGR-----tG~---~~~~~~~~v~PDi~~~g--K~l~gG~~p~~av~~~~~-i~~~~~~----~~~~~---  303 (429)
T d1s0aa_         242 LIADEIATGFGR-----TGK---LFACEHAEIAPDILCLG--KALTGGTMTLSATLTTRE-VAETISN----GEAGC---  303 (429)
T ss_dssp             EEEECTTTTTTT-----TSS---SSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECHH-HHHHHHT----STTSS---
T ss_pred             eehhhccccccc-----ccc---ccccccceecccccccc--cccccccccccchhhHHH-HHhccCC----CCCcc---
Confidence            999999988753     222   233333344  888886  543 33345677777654 2211100    00000   


Q ss_pred             CCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675          383 PTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF  430 (438)
Q Consensus       383 ~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  430 (438)
                      ....++-.+..  .++..++|+.+.+   ++..++..++.++|++.|+++
T Consensus       304 ~~~~~T~~gnp~~~aaa~a~L~~i~~---~~~~~~~~~~g~~l~~~L~~l  350 (429)
T d1s0aa_         304 FMHGPTFMGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPA  350 (429)
T ss_dssp             CSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGG
T ss_pred             eeecCCCCCCcccchhhhcccccccc---ccccchhhHHHHHHHHHHHHh
Confidence            01111222221  3344445544433   345677777888888888654

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.85  E-value=4.8e-08  Score=96.21  Aligned_cols=167  Identities=17%  Similarity=0.118  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC-----
Q 013675          174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN-----  247 (438)
Q Consensus       174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G-----  247 (438)
                      .++.+.++++..-..+.    +  .++++||||+..|++.+|.+.    |  +++|+.-... |....-+...-+     
T Consensus        86 ~~la~~L~~~~~~~~~~----v--~f~~sGseA~e~Alk~Ar~~t----~--r~~i~~~~~~yHG~t~~~~~~~~~~~~~  153 (431)
T d1zoda1          86 VDLATRLANITPPGLDR----A--LLLSTGAESNEAAIRMAKLVT----G--KYEIVGFAQSWHGMTGAAASATYSAGRK  153 (431)
T ss_dssp             HHHHHHHHHHSCTTCCE----E--EEESCHHHHHHHHHHHHHHHH----T--CCEEEEETTCCCCSSHHHHHTCCSSCCS
T ss_pred             HHHHHHHHHhCCcccce----e--eecccccchHHHHHHHHHHhc----C--Ccceeecccccccccchhhccccccccc
Confidence            45666777776433333    5  899999999999999999753    2  2566665554 444333332211     


Q ss_pred             ------cEEEEeeCCCC---------CccC---HHHHHHhh----ccCcEEEEEecCCCCCccccC----HHHHHHHHHH
Q 013675          248 ------IKLWRVPVDKE---------FRAD---VKAIKKYI----NRNTVLIVGSAPGFPHGIIDP----IQELGELALS  301 (438)
Q Consensus       248 ------i~v~~v~~~~~---------~~~d---~~~Le~~I----~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~  301 (438)
                            .....++....         ...+   .+.++..+    .++.++|++.......|.+.+    +++|.++|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~  233 (431)
T d1zoda1         154 GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA  233 (431)
T ss_dssp             SSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHH
T ss_pred             ccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHh
Confidence                  12333332211         0112   23333332    235778888877766677655    8999999999


Q ss_pred             cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecc
Q 013675          302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNR  362 (438)
Q Consensus       302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~  362 (438)
                      ||++++.|+++.|+..     .|.   .+.....|+  |+++++  |.+.++...+.++.+++
T Consensus       234 ~gillI~DEV~tG~gR-----tG~---~~~~~~~gv~PDi~~~g--K~l~gG~p~~av~~~~~  286 (431)
T d1zoda1         234 RGMLLILDEAQTGVGR-----TGT---MFACQRDGVTPDILTLS--KTLGAGLPLAAIVTSAA  286 (431)
T ss_dssp             HTCEEEEECTTTTTTT-----TSS---SSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEECHH
T ss_pred             cCceEEeccccccccc-----ccc---ccccccCCCCcchhccc--cccccccccceeeeeec
Confidence            9999999999988653     121   122222333  888887  65333334455556543

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.76  E-value=1.5e-07  Score=93.32  Aligned_cols=137  Identities=14%  Similarity=0.062  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh--------------------cCCCCCeEEecCC
Q 013675          175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK--------------------RGITRPEMIIPVS  234 (438)
Q Consensus       175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~--------------------~G~~~~~Viv~~~  234 (438)
                      ++.+.+.++.+.+.+.    +  .++++||||+..|++.+|.+...+                    +|..+.+||.-..
T Consensus       104 ~lae~l~~~~~~~~~~----v--~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~  177 (461)
T d1ohwa_         104 KLRESLLSVAPKGMSQ----L--ITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMG  177 (461)
T ss_dssp             HHHHTGGGGCCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETT
T ss_pred             HHHHHHHhhhccCcce----e--eeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecC
Confidence            3444455554444343    5  899999999999999998764322                    2333446766544


Q ss_pred             C-cCcHHHHHhhcCc-----------EEEEeeCCC-C-------------CccCHHHHHHhhc------cCcEEEEEecC
Q 013675          235 A-HSAYDKAAQYFNI-----------KLWRVPVDK-E-------------FRADVKAIKKYIN------RNTVLIVGSAP  282 (438)
Q Consensus       235 ~-h~s~~~a~~~~Gi-----------~v~~v~~~~-~-------------~~~d~~~Le~~I~------~~t~~vv~~~~  282 (438)
                      + |.....+...-|-           .....|... .             ...+.+++++.+.      +++.+|++...
T Consensus       178 syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi  257 (461)
T d1ohwa_         178 AFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPI  257 (461)
T ss_dssp             CCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccc
Confidence            4 5554444433321           111112111 0             0123456666553      45778888888


Q ss_pred             CCCCccccC----HHHHHHHHHHcCCeEEEeccccchhh
Q 013675          283 GFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVL  317 (438)
Q Consensus       283 ~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~  317 (438)
                      ....|.+.+    +++|.++|++||+++++|+++.|+..
T Consensus       258 ~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gR  296 (461)
T d1ohwa_         258 QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGS  296 (461)
T ss_dssp             BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSST
T ss_pred             cccccccCchhhHHHHHHHHHHhhCcceecccccccccc
Confidence            777777654    89999999999999999999988753