Citrus Sinensis ID: 013692

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDDDVQPGKKPRV
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccccccEEEEEEccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHcccccccccccHHHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHccHHHHHHcccccccHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccHccccccccEEEEEEcccccccccccEEEEcHccccccHHccEccccHHHHHHHHHHHHHHHccccccEEEEcccHHHccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccEcccccEEEcccccccccccccccccccccccccccccccccccccccccccHcccccHHHHHHHHHHHccccccccccccHHHcccHHHccccccccccHcccccccccccccccHHHcccccccEccccHHHHHHHHccHHccccccccccHHHcccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHccEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAKSVYQWIVKPQTvmktnemflpgrmsfifnteggysndipttlhrskadcpvpdemvtvSVDGSVLDRIAKIMTYLRlgssgkvlkkkkkerdvkvtgkTSTVvneydeedkpskansgipngktekeilpppppppkknhvdsrekqgpivarseeddifvgagtdytvpgkdmnqspvsedmeesprnkekvSYFSesvygpvppaepplawqdtngyDAMQAQALAGGYQGEWQDYQYAEQlaypeqylqpdmqtyemqaglnmpqdprfmtqeekdrglgsvfkrDDQRLLQLREKdarekdpnfisesysecypgyqeynreivdsddeddlskmdmggrakgrlhrwdfeTEEEWATYNEQKEAMPKAAFQFGvkmqdgrktrkqnkdqKLTNELHKINKILARKKmekdtngegghydddvqpgkkprv
Flexible Loop (DISEMBL)
maksvyqwivkpqtvmktnemfLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTylrlgssgkvlkkkkkerdvkvtgktstvvneydeedkpskansgipngktekeilpppppppkknhvdsREKQGPivarseeddifvgagtdytvpgkdmnqspvsedmeesprnKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEkdrglgsvfkrddqRLLQLrekdarekdpnfisesysecypgYQEYNREIVDSDDEDDLSKMDmggrakgrlhrwdfeTEEEWATYNEQKEAMPKAAFQFGVKmqdgrktrkqnkdqkltneLHKINKILarkkmekdtngegghydddvqpgkkprv
Low Complexity Region (SEG)
MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGkvlkkkkkerdvkvtgkTSTVVNEYDEEDKPSKANSGIPNGKTEKEILpppppppKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVdsddeddlskmdmGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDDDVQPGKKPRV
Disordered region (IsUnstruct)
****VYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRL*************************************************************************************************************************************LAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQ**************************************************************ECYPGYQEY**************************HRWDFETEEEWAT*************************************************************************
Disordered Region (DISOPRED)
*AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMT*************************************************************************************IFVGAGTDY********************************************************************QDYQYA*********************************************************************ESYSECYPGYQEY****************************WDFETEEEWATYNE**EAMPKAA*************************************************************
Disordered Region (DISEMBL)
MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGK***************KTSTVVNE***********SGIPNGKTEKEILPPP***************GPIVARSEEDDIFVGAGTDYTVPGKDMN******************SYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKM************QKLTNELHKINKILARKKMEKDTNGEGGHYDDD*********
Disordered Region (DISPRO)
MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK****************************************************************SEEDDIFVGAGTDYTVPGK*********************SYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDM**RAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKK************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDDDVQPGKKPRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
Q66HG8	557	Protein Red OS=Rattus nor	yes	no	0.237	0.186	0.513	3e-20
Q13123	557	Protein Red OS=Homo sapie	yes	no	0.237	0.186	0.513	3e-20
Q5NVI3	557	Protein Red OS=Pongo abel	yes	no	0.237	0.186	0.513	3e-20
Q9Z1M8	557	Protein Red OS=Mus muscul	yes	no	0.237	0.186	0.504	5e-20

>sp|Q66HG8|RED_RAT Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 7/111 (6%)

Query: 312 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 371
           +S SY+ECYP     +   VDSD+E D SKMD G + KG L RWDF+T+EE++ Y   KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497

Query: 372 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 418
           A+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RKKME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548

May bind to chromatin.
Rattus norvegicus (taxid: 10116)

>sp|Q13123|RED_HUMAN Protein Red OS=Homo sapiens GN=IK PE=1 SV=3

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 7/111 (6%)

Query: 312 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 371
           +S SY+ECYP     +   VDSD+E D SKMD G + KG L RWDF+T+EE++ Y   KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497

Query: 372 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 418
           A+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RKKME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548

May bind to chromatin.

Homo sapiens (taxid: 9606)

>sp|Q5NVI3|RED_PONAB Protein Red OS=Pongo abelii GN=IK PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 7/111 (6%)

Query: 312 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 371
           +S SY+ECYP     +   VDSD+E D SKMD G + KG L RWDF+T+EE++ Y   KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497

Query: 372 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 418
           A+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RKKME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548

May bind to chromatin.

Pongo abelii (taxid: 9601)

>sp|Q9Z1M8|RED_MOUSE Protein Red OS=Mus musculus GN=Ik PE=2 SV=2

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 7/111 (6%)

Query: 312 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 371
           +S SY+ECYP     +   VDSD+E D SKMD G + KG L RWDF+T+EE++ Y   KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497

Query: 372 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 418
           A+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RK+ME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKRMEAD 548

May bind to chromatin.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
225444599	566	PREDICTED: protein Red isoform 1 [Vitis	0.988	0.765	0.835	0.0
225444601	567	PREDICTED: protein Red isoform 2 [Vitis	0.988	0.763	0.835	0.0
356530469	567	PREDICTED: protein Red [Glycine max]	0.990	0.765	0.815	0.0
356556428	565	PREDICTED: protein Red-like [Glycine max	0.986	0.764	0.803	0.0
255550309	567	red protein, putative [Ricinus communis]	0.993	0.767	0.830	0.0
449437520	561	PREDICTED: protein Red-like [Cucumis sat	0.981	0.766	0.789	0.0
359484499	536	PREDICTED: protein Red isoform 3 [Vitis	0.931	0.761	0.824	0.0
224142762	567	predicted protein [Populus trichocarpa]	0.988	0.763	0.802	0.0
242082564	564	hypothetical protein SORBIDRAFT_08g00103	0.981	0.762	0.724	1e-174
414882034	667	TPA: hypothetical protein ZEAMMB73_53627	0.984	0.646	0.723	1e-171

>gi|225444599|ref|XP_002274576.1| PREDICTED: protein Red isoform 1 [Vitis vinifera] gi|297738505|emb|CBI27750.3| unnamed protein product [Vitis vinifera]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/438 (83%), Positives = 400/438 (91%), Gaps = 5/438 (1%)

Query: 2   AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTV 61
           AKSVYQWIVKPQTV+K+NEMFLPGRM+FIF+ EGG+S+DIPTTLHRSKADCPVP+EMVTV
Sbjct: 133 AKSVYQWIVKPQTVVKSNEMFLPGRMAFIFSMEGGFSSDIPTTLHRSKADCPVPEEMVTV 192

Query: 62  SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSG 121
            VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERDVK  GK STV NE+DEE KPSK + G
Sbjct: 193 GVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDVK--GKISTVGNEFDEEKKPSKLDGG 250

Query: 122 IPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSP 181
           +   +TE+E LPPP PP +KN+VDSREK GP VARSE+DDIFVG G +Y +P KDM+QSP
Sbjct: 251 MSKNQTERESLPPPLPP-RKNYVDSREKHGPSVARSEQDDIFVGDGVEYDIPSKDMSQSP 309

Query: 182 VSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDY 241
           VSEDMEESPRNKE++SY SE  YGPVPP+EP   WQ TNGYDAMQAQALA GYQG+WQ+Y
Sbjct: 310 VSEDMEESPRNKERISYLSEPAYGPVPPSEPQ-EWQQTNGYDAMQAQALAAGYQGDWQEY 368

Query: 242 QYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLRE 301
           QYAEQ+AYPEQYLQ +MQTY++QAG+ +PQDPRFMTQEEKDRGLGSVFKRDDQRL QLRE
Sbjct: 369 QYAEQMAYPEQYLQQNMQTYDVQAGMGIPQDPRFMTQEEKDRGLGSVFKRDDQRLQQLRE 428

Query: 302 KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 361
           KDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAKGRLHRWDFETEE
Sbjct: 429 KDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 488

Query: 362 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEK-DTN 420
           EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEK + N
Sbjct: 489 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKGEMN 548

Query: 421 GEGGHYDDDVQPGKKPRV 438
            +GG YDDD QPGKK R+
Sbjct: 549 DDGGRYDDDSQPGKKLRI 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444601|ref|XP_002274600.1| PREDICTED: protein Red isoform 2 [Vitis vinifera]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/438 (83%), Positives = 400/438 (91%), Gaps = 5/438 (1%)

Query: 2   AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTV 61
           AKSVYQWIVKPQTV+K+NEMFLPGRM+FIF+ EGG+S+DIPTTLHRSKADCPVP+EMVTV
Sbjct: 134 AKSVYQWIVKPQTVVKSNEMFLPGRMAFIFSMEGGFSSDIPTTLHRSKADCPVPEEMVTV 193

Query: 62  SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSG 121
            VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERDVK  GK STV NE+DEE KPSK + G
Sbjct: 194 GVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDVK--GKISTVGNEFDEEKKPSKLDGG 251

Query: 122 IPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSP 181
           +   +TE+E LPPP PP +KN+VDSREK GP VARSE+DDIFVG G +Y +P KDM+QSP
Sbjct: 252 MSKNQTERESLPPPLPP-RKNYVDSREKHGPSVARSEQDDIFVGDGVEYDIPSKDMSQSP 310

Query: 182 VSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDY 241
           VSEDMEESPRNKE++SY SE  YGPVPP+EP   WQ TNGYDAMQAQALA GYQG+WQ+Y
Sbjct: 311 VSEDMEESPRNKERISYLSEPAYGPVPPSEPQ-EWQQTNGYDAMQAQALAAGYQGDWQEY 369

Query: 242 QYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLRE 301
           QYAEQ+AYPEQYLQ +MQTY++QAG+ +PQDPRFMTQEEKDRGLGSVFKRDDQRL QLRE
Sbjct: 370 QYAEQMAYPEQYLQQNMQTYDVQAGMGIPQDPRFMTQEEKDRGLGSVFKRDDQRLQQLRE 429

Query: 302 KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 361
           KDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAKGRLHRWDFETEE
Sbjct: 430 KDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 489

Query: 362 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEK-DTN 420
           EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEK + N
Sbjct: 490 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKGEMN 549

Query: 421 GEGGHYDDDVQPGKKPRV 438
            +GG YDDD QPGKK R+
Sbjct: 550 DDGGRYDDDSQPGKKLRI 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530469|ref|XP_003533803.1| PREDICTED: protein Red [Glycine max]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/438 (81%), Positives = 388/438 (88%), Gaps = 4/438 (0%)

Query: 2   AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTV 61
           AKSVYQWIVKPQT+ KTNEMFLPGRM+FI+N EGGY +DIPTTLHRSKADCPVP+EMVTV
Sbjct: 133 AKSVYQWIVKPQTISKTNEMFLPGRMTFIYNMEGGYHHDIPTTLHRSKADCPVPEEMVTV 192

Query: 62  SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSG 121
           +VDGSVLDRIAKIM+YLRLGSSGK+LKKK+KE+     GK   V N +D+EDKPSK   G
Sbjct: 193 NVDGSVLDRIAKIMSYLRLGSSGKILKKKRKEK--DAKGKILAVGNGFDKEDKPSKVEGG 250

Query: 122 IPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSP 181
             N +TEKEI+ PPPPP KKN + S EKQGP VAR+E+DDIFVG G DY +PGKD++QSP
Sbjct: 251 AKN-QTEKEIILPPPPPIKKNPLHSIEKQGPAVARAEDDDIFVGEGVDYDIPGKDLSQSP 309

Query: 182 VSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDY 241
           VSEDMEESPRNKEK SYF+E  YGPV P+  P  WQ+TNGYD MQ QALA GYQGEWQ+Y
Sbjct: 310 VSEDMEESPRNKEKPSYFTEPTYGPVQPSMVPQGWQETNGYDVMQTQALAAGYQGEWQEY 369

Query: 242 QYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLRE 301
           QYAEQLAYP+QYLQ +MQ Y+ QA LN+P DPRFMTQEEKDRGLGSVFKRDDQRL QLRE
Sbjct: 370 QYAEQLAYPDQYLQQNMQAYDEQADLNLPLDPRFMTQEEKDRGLGSVFKRDDQRLQQLRE 429

Query: 302 KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 361
           KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE
Sbjct: 430 KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 489

Query: 362 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNG 421
           EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL N+LHKINKILARKKMEKDTNG
Sbjct: 490 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKINKILARKKMEKDTNG 549

Query: 422 EGG-HYDDDVQPGKKPRV 438
           EGG HYDD+  PGKK R+
Sbjct: 550 EGGNHYDDEPTPGKKLRI 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556428|ref|XP_003546528.1| PREDICTED: protein Red-like [Glycine max]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/438 (80%), Positives = 383/438 (87%), Gaps = 6/438 (1%)

Query: 2   AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTV 61
           AKSVYQWIVKPQT+ KTNEMFLPGRM+FI+N EGGY +DIPTTLHRSKADCPVP+EMVTV
Sbjct: 133 AKSVYQWIVKPQTISKTNEMFLPGRMTFIYNMEGGYHHDIPTTLHRSKADCPVPEEMVTV 192

Query: 62  SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSG 121
           +VDGSVLDRIAKIM+YLRLGSSGK+LKKKKKE+     GK   V N +D+EDKPSK   G
Sbjct: 193 NVDGSVLDRIAKIMSYLRLGSSGKILKKKKKEK--DAKGKILAVGNGFDKEDKPSKVEGG 250

Query: 122 IPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSP 181
               K + E    PPPP KKN + SREKQGP VAR+E+DDIFVG G  Y VPGKD++QSP
Sbjct: 251 ---AKNQTEKEIIPPPPIKKNPLHSREKQGPAVARAEDDDIFVGEGVHYDVPGKDLSQSP 307

Query: 182 VSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDY 241
           VSEDMEESPRNKEK SY +E  YGPVPP+  P  WQ+TNGYD MQ QA   GYQGEWQ+Y
Sbjct: 308 VSEDMEESPRNKEKPSYVTEPTYGPVPPSMVPQGWQETNGYDVMQTQAFDAGYQGEWQEY 367

Query: 242 QYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLRE 301
           QYAEQLAYP+QYLQ +MQ Y++QAGLN+PQDPRFM+QEEKDRGLGSVFKRDDQRL QLRE
Sbjct: 368 QYAEQLAYPDQYLQQNMQPYDVQAGLNLPQDPRFMSQEEKDRGLGSVFKRDDQRLQQLRE 427

Query: 302 KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 361
           +DAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE
Sbjct: 428 RDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 487

Query: 362 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNG 421
           EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL N+LHKINKILARKKMEKDTNG
Sbjct: 488 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKINKILARKKMEKDTNG 547

Query: 422 EGG-HYDDDVQPGKKPRV 438
           EGG HYDD+  PGKK R+
Sbjct: 548 EGGHHYDDEPTPGKKLRI 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550309|ref|XP_002516205.1| red protein, putative [Ricinus communis] gi|223544691|gb|EEF46207.1| red protein, putative [Ricinus communis]

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/437 (83%), Positives = 386/437 (88%), Gaps = 2/437 (0%)

Query: 2   AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTV 61
           AKSVYQ IVKPQ +MKTNEMFLPGRMSFIFN EGGY++DIPTTLHRSKADCPVP+EMVTV
Sbjct: 133 AKSVYQSIVKPQAIMKTNEMFLPGRMSFIFNMEGGYTHDIPTTLHRSKADCPVPEEMVTV 192

Query: 62  SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSG 121
           +VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKE      GK S + +E++EEDK SK N G
Sbjct: 193 NVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKE--KDAKGKISVIGHEHNEEDKHSKPNGG 250

Query: 122 IPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSP 181
           I N KTE+EILPPPPPPPKK+  DS EKQGPIVAR EE+DIFVG G DY VPGKDM+QSP
Sbjct: 251 ISNNKTEREILPPPPPPPKKSQPDSHEKQGPIVARGEENDIFVGDGVDYDVPGKDMSQSP 310

Query: 182 VSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDY 241
           VSEDMEESPRNKE+VSYFSE VYGPVPP+ P   WQD NGYDA+QAQALA GYQGEWQDY
Sbjct: 311 VSEDMEESPRNKERVSYFSEPVYGPVPPSGPSQEWQDLNGYDAIQAQALASGYQGEWQDY 370

Query: 242 QYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLRE 301
           QY EQLAY EQYLQ  MQ Y+MQA  N+ QDPRFMTQEEKDRGLGSVFKRDDQRL QLRE
Sbjct: 371 QYTEQLAYSEQYLQQTMQAYDMQAASNVLQDPRFMTQEEKDRGLGSVFKRDDQRLQQLRE 430

Query: 302 KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 361
           KDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAKGRLHRWDFETEE
Sbjct: 431 KDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 490

Query: 362 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNG 421
           EWA YNEQKEAMPKAA+QFGVKMQDGRKTRKQNKDQKL NELHKINKILARKKMEKD+  
Sbjct: 491 EWAKYNEQKEAMPKAAYQFGVKMQDGRKTRKQNKDQKLNNELHKINKILARKKMEKDSGD 550

Query: 422 EGGHYDDDVQPGKKPRV 438
                DDDVQ  KKPR+
Sbjct: 551 GDHFDDDDVQHAKKPRI 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437520|ref|XP_004136540.1| PREDICTED: protein Red-like [Cucumis sativus] gi|449514795|ref|XP_004164482.1| PREDICTED: protein Red-like [Cucumis sativus]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/437 (78%), Positives = 383/437 (87%), Gaps = 7/437 (1%)

Query: 2   AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTV 61
           AKSVY+WIVKPQT +K+NE FLPGR SFI+N EGGYS+DIPTTLHRSKADCPVP+EMVTV
Sbjct: 132 AKSVYKWIVKPQTGIKSNETFLPGRTSFIYNMEGGYSHDIPTTLHRSKADCPVPEEMVTV 191

Query: 62  SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSG 121
           +VDGSVLDRIAKIM+YLRLGSSGKVLKKKKK++   V GK S++VNEY   +KPS  ++G
Sbjct: 192 NVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKDK--DVKGKISSIVNEYVGINKPSTLDTG 249

Query: 122 IPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSP 181
           +P  + E+E + PPPPP KKN +  +EKQGP+V R E+DDIFVGAG DYTVPGKD++QSP
Sbjct: 250 VPKKQMERE-MLPPPPPLKKNQIVLKEKQGPVVTRVEDDDIFVGAGVDYTVPGKDLSQSP 308

Query: 182 VSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDY 241
           +SEDMEESPRNKEK SYFSE  YGPVPP+ PP  WQ+TNGY  MQ QA   GYQGEWQDY
Sbjct: 309 LSEDMEESPRNKEKPSYFSEPAYGPVPPSGPPQEWQETNGYGVMQPQAFPAGYQGEWQDY 368

Query: 242 QYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLRE 301
           QY+EQLAY EQYLQ +MQ Y+MQ G N+ QDPR MTQEEKDRGLGSVFKRDDQRL QLRE
Sbjct: 369 QYSEQLAYSEQYLQLNMQAYDMQTGANIQQDPRLMTQEEKDRGLGSVFKRDDQRLQQLRE 428

Query: 302 KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 361
           +DAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE
Sbjct: 429 RDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 488

Query: 362 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNG 421
           EWA YNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL NELHKINKILA+KKMEK+ NG
Sbjct: 489 EWAKYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNELHKINKILAKKKMEKEMNG 548

Query: 422 EGGHYDDDVQPGKKPRV 438
           +    D+D+QPGKK RV
Sbjct: 549 D----DEDIQPGKKIRV 561

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484499|ref|XP_002274638.2| PREDICTED: protein Red isoform 3 [Vitis vinifera]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/415 (82%), Positives = 373/415 (89%), Gaps = 7/415 (1%)

Query: 27  MSFIFNT--EGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSG 84
           +SF   T  EGG+S+DIPTTLHRSKADCPVP+EMVTV VDGSVLDRIAKIM+YLRLGSSG
Sbjct: 126 LSFRTATAKEGGFSSDIPTTLHRSKADCPVPEEMVTVGVDGSVLDRIAKIMSYLRLGSSG 185

Query: 85  KVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHV 144
           KVLKKKKKERDVK  GK STV NE+DEE KPSK + G+   +TE+E LPPP PP +KN+V
Sbjct: 186 KVLKKKKKERDVK--GKISTVGNEFDEEKKPSKLDGGMSKNQTERESLPPPLPP-RKNYV 242

Query: 145 DSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVY 204
           DSREK GP VARSE+DDIFVG G +Y +P KDM+QSPVSEDMEESPRNKE++SY SE  Y
Sbjct: 243 DSREKHGPSVARSEQDDIFVGDGVEYDIPSKDMSQSPVSEDMEESPRNKERISYLSEPAY 302

Query: 205 GPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQ 264
           GPVPP+EP   WQ TNGYDAMQAQALA GYQG+WQ+YQYAEQ+AYPEQYLQ +MQTY++Q
Sbjct: 303 GPVPPSEPQ-EWQQTNGYDAMQAQALAAGYQGDWQEYQYAEQMAYPEQYLQQNMQTYDVQ 361

Query: 265 AGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQ 324
           AG+ +PQDPRFMTQEEKDRGLGSVFKRDDQRL QLREKDAREKDPNFISESYSECYPGYQ
Sbjct: 362 AGMGIPQDPRFMTQEEKDRGLGSVFKRDDQRLQQLREKDAREKDPNFISESYSECYPGYQ 421

Query: 325 EYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKM 384
           EYNRE+VDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKM
Sbjct: 422 EYNREVVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKM 481

Query: 385 QDGRKTRKQNKDQKLTNELHKINKILARKKMEK-DTNGEGGHYDDDVQPGKKPRV 438
           QDGRKTRKQNKDQKLTNELHKINKILARKKMEK + N +GG YDDD QPGKK R+
Sbjct: 482 QDGRKTRKQNKDQKLTNELHKINKILARKKMEKGEMNDDGGRYDDDSQPGKKLRI 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142762|ref|XP_002324721.1| predicted protein [Populus trichocarpa] gi|222866155|gb|EEF03286.1| predicted protein [Populus trichocarpa]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/436 (80%), Positives = 384/436 (88%), Gaps = 3/436 (0%)

Query: 2   AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTV 61
           AKSVYQWIVKPQT++KTNEMFLPGRMSFIFN EGGYS+DIPTTLHRSKADCPVP+EMVTV
Sbjct: 134 AKSVYQWIVKPQTIIKTNEMFLPGRMSFIFNMEGGYSHDIPTTLHRSKADCPVPEEMVTV 193

Query: 62  SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSG 121
           SVDGSVLDRIAKIM+YLRLGSSGKVLKKKKK++     GK S V NEYDE DKPSK + G
Sbjct: 194 SVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKDK--DAKGKISVVGNEYDEHDKPSKPSGG 251

Query: 122 IPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSP 181
           + N KTE+EILPPPPPPPK N  DS EKQ P VAR +E+DIFVG G DY VPGKDM+QSP
Sbjct: 252 MLNNKTEREILPPPPPPPKNNLADSFEKQQPAVAREDENDIFVGHGIDYEVPGKDMSQSP 311

Query: 182 VSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDY 241
           +SEDMEESPRNKE++SYFSE VYGPVPP+E    WQD NGYDA+ AQAL+  YQGEWQ+Y
Sbjct: 312 LSEDMEESPRNKERLSYFSEPVYGPVPPSELSHEWQDPNGYDAVHAQALSADYQGEWQNY 371

Query: 242 QYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLRE 301
           QYAEQ AYPEQY Q  MQ Y+MQA  ++  DPRFMTQEEKDRGLGSVFKRDDQRL QLRE
Sbjct: 372 QYAEQFAYPEQYTQQTMQAYDMQAASSIQPDPRFMTQEEKDRGLGSVFKRDDQRLQQLRE 431

Query: 302 KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 361
           KDAREKDPNFIS+SYSECYP YQ + RE+VDSDDEDDLSKMDMGGRAKGRLHRWDF+TE+
Sbjct: 432 KDAREKDPNFISDSYSECYPAYQHFTREVVDSDDEDDLSKMDMGGRAKGRLHRWDFDTED 491

Query: 362 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNG 421
           EWA YNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL NELH+INKILA+KK++K+ NG
Sbjct: 492 EWAKYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNELHQINKILAKKKIDKE-NG 550

Query: 422 EGGHYDDDVQPGKKPR 437
           +GGHYDDD  PGKK R
Sbjct: 551 DGGHYDDDTPPGKKQR 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242082564|ref|XP_002441707.1| hypothetical protein SORBIDRAFT_08g001030 [Sorghum bicolor] gi|241942400|gb|EES15545.1| hypothetical protein SORBIDRAFT_08g001030 [Sorghum bicolor]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 316/436 (72%), Positives = 364/436 (83%), Gaps = 6/436 (1%)

Query: 3   KSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVS 62
           +SVYQWI+KPQ+++K NE+FLPGRMSFI+N E G +NDIPTTLHRSKADCP+P+EMVTVS
Sbjct: 133 QSVYQWIIKPQSIIKENELFLPGRMSFIYNMEEGVTNDIPTTLHRSKADCPIPEEMVTVS 192

Query: 63  VDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGI 122
           VDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERD+K  GK++    +YDE  KPS+ N   
Sbjct: 193 VDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDIK--GKSNLASGDYDESVKPSQINGST 250

Query: 123 PNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPV 182
              K + ++ PPP PPP+ N+ + +EKQ   V+R+++DDIFVG G DY+VP K+M+QSPV
Sbjct: 251 L--KHQSDMPPPPAPPPRNNNFNGKEKQPVPVSRADDDDIFVGDGVDYSVPNKEMSQSPV 308

Query: 183 SEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQ 242
           S DM+ESP N +K S F+E +YGPVPP+EP  AWQ  NGYDA+QAQ  A GYQG+W  Y 
Sbjct: 309 S-DMDESPHNHQKQSNFTEPMYGPVPPSEPAQAWQQQNGYDAVQAQMAAAGYQGDWSSYV 367

Query: 243 YAEQ-LAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLRE 301
           YAEQ L YPEQY+Q   Q Y++ A  ++ QDPRFMTQ +KDRGLGSVFKRDDQRL QLRE
Sbjct: 368 YAEQQLGYPEQYVQQSTQEYDVLADPSLSQDPRFMTQADKDRGLGSVFKRDDQRLNQLRE 427

Query: 302 KDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEE 361
           KDARE+DPNFIS+SYSECYPGYQEYN EI  SDDEDDLSKMDMGGRAKGRLHRWDFETEE
Sbjct: 428 KDARERDPNFISDSYSECYPGYQEYNNEIAGSDDEDDLSKMDMGGRAKGRLHRWDFETEE 487

Query: 362 EWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNG 421
           EWA YN+QKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTN+LHKINKILARKK EKD   
Sbjct: 488 EWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKINKILARKKGEKDGAE 547

Query: 422 EGGHYDDDVQPGKKPR 437
           +GGHYDDD+   KK R
Sbjct: 548 DGGHYDDDLPSSKKQR 563

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414882034|tpg|DAA59165.1| TPA: hypothetical protein ZEAMMB73_536270 [Zea mays]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 316/437 (72%), Positives = 357/437 (81%), Gaps = 6/437 (1%)

Query: 2   AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTV 61
           AKSVYQWI+KPQ+++K NE+FLPGRMSFI+N E   +NDIPTTLHRSKADCPV +EMVTV
Sbjct: 235 AKSVYQWIIKPQSIIKENELFLPGRMSFIYNLEEVVTNDIPTTLHRSKADCPVQEEMVTV 294

Query: 62  SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSG 121
           SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERD+K  GK +    + DE  KPSK N  
Sbjct: 295 SVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDIK--GKNNLASGDCDESVKPSKINGS 352

Query: 122 IPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSP 181
               K + ++ PPP  PP+ N+   +EKQ   VAR+++DDIFVG G DYTVP ++M+QSP
Sbjct: 353 TQ--KHQSDMPPPPARPPQNNNFTGKEKQPVPVARADDDDIFVGDGVDYTVPNEEMSQSP 410

Query: 182 VSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDY 241
           VS DM+ESP N +K S F E +YGPVPP+EP  AWQ  NGYDA+QAQ  A GYQG+W  Y
Sbjct: 411 VS-DMDESPHNHQKQSNFIEPMYGPVPPSEPAQAWQQPNGYDAVQAQMAAAGYQGDWSSY 469

Query: 242 QYAEQ-LAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLR 300
            YAEQ L YPEQY+Q   Q Y++ A  ++ QDPRFMTQ +KDRGLGSVFKRDDQRL QLR
Sbjct: 470 VYAEQQLGYPEQYVQQSTQEYDVLADPSISQDPRFMTQADKDRGLGSVFKRDDQRLNQLR 529

Query: 301 EKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETE 360
           EKD RE+DPNFIS+SYSECYPGYQEYN EI  SDDEDDLSKMDMGGRAKGRLHRWDFETE
Sbjct: 530 EKDERERDPNFISDSYSECYPGYQEYNNEIAGSDDEDDLSKMDMGGRAKGRLHRWDFETE 589

Query: 361 EEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTN 420
           EEWA YN+QKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTN+LHKINKILARKK EKD  
Sbjct: 590 EEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKINKILARKKGEKDGA 649

Query: 421 GEGGHYDDDVQPGKKPR 437
            +GGHYDDD+   KK R
Sbjct: 650 EDGGHYDDDLPSSKKQR 666

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
TAIR|locus:2066221	585	SMU2 "AT2G26460" [Arabidopsis	0.988	0.740	0.630	1.4e-144
FB|FBgn0037660	557	beag "beag" [Drosophila melano	0.273	0.215	0.444	4.7e-31
UNIPROTKB|F1RGE2	873	LOC100738153 "Uncharacterized	0.308	0.154	0.395	5e-31
UNIPROTKB|J9P876	854	IK "Uncharacterized protein" [	0.308	0.158	0.395	1.2e-30
ZFIN|ZDB-GENE-030131-960	548	ik "IK cytokine" [Danio rerio	0.237	0.189	0.423	4.2e-30
UNIPROTKB|F1NDF8	552	IK "Uncharacterized protein" [	0.273	0.217	0.379	7.3e-30
RGD|1359352	557	Ik "IK cytokine, down-regulato	0.264	0.208	0.403	1.6e-29
UNIPROTKB|F1LSE1	557	Ik "Protein Red" [Rattus norve	0.264	0.208	0.403	1.6e-29
UNIPROTKB|K7GQD2	553	LOC100738153 "Uncharacterized	0.264	0.209	0.403	1.9e-29
UNIPROTKB|A4FUY8	555	IK "Uncharacterized protein" [	0.264	0.209	0.403	2e-29

TAIR|locus:2066221 SMU2 "AT2G26460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1413 (502.5 bits), Expect = 1.4e-144, P = 1.4e-144
 Identities = 287/455 (63%), Positives = 335/455 (73%)

Query:     2 AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTV 61
             AKSVYQWIVKPQT++K+NEMFLPGRM+F+++ EGGY++DIPTTL+RSKADCPVP+E VTV
Sbjct:   133 AKSVYQWIVKPQTIIKSNEMFLPGRMTFVYDMEGGYTHDIPTTLYRSKADCPVPEEFVTV 192

Query:    62 SVDGSVLDRIAKIMTYLRLGSSGXXXXXXXXXXXXXXXXXTSTVVNEYDEEDKPSKANSG 121
             +VDGSVLDRIAKIM+YLRLGSSG                  ST+ N+YDE+D  SK  +G
Sbjct:   193 NVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKEKDGKGKM--STIANDYDEDDNKSKIENG 250

Query:   122 IPNGKTEKEILXXXXXXXKK-NHVD-SREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQ 179
                  +++E+L          NH+D S +++ P VAR+++DDIFVG G DYTVPGKD+ Q
Sbjct:   251 SSVNISDREVLPPPPPLPPGINHLDLSTKQEEPPVARTDDDDIFVGEGVDYTVPGKDVTQ 310

Query:   180 SPVSEDMEESPRNKEKVSYFSESVYGPVP---P--AEP------PLA---WQDTNGYDAM 225
             SP+SEDMEESPR+KEKVSYF E  YGPV    P  AEP      P A   WQD + Y AM
Sbjct:   311 SPISEDMEESPRDKEKVSYFDEPAYGPVQEKVPYFAEPAYGPVQPSAGQEWQDMSAYGAM 370

Query:   226 QAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGL 285
             Q Q LA GY GEWQ+YQYAEQ  Y EQYLQP M+ YE+Q   ++  DP+ M+QEEKDRGL
Sbjct:   371 QTQGLAPGYPGEWQEYQYAEQTGYQEQYLQPGMEGYEVQPETDVLLDPQLMSQEEKDRGL 430

Query:   286 GSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVXXXXXXXXXXXXXG 345
             GSVFKRDDQRL QLRE DAREKDP F+SESYSECYPGYQEYN EIV             G
Sbjct:   431 GSVFKRDDQRLQQLRESDAREKDPTFVSESYSECYPGYQEYNHEIVGSDEEPDLSKMDMG 490

Query:   346 GRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKD--QKLTNEL 403
             G+AKG LHRWDFETEEEW  YNEQKEAMPKAAFQFGVKMQDGRKTRKQN+D  QKL NEL
Sbjct:   491 GKAKGGLHRWDFETEEEWEKYNEQKEAMPKAAFQFGVKMQDGRKTRKQNRDRDQKLNNEL 550

Query:   404 HKINKILARKKMEKDTNGEGGHYDD-DVQPGKKPR 437
             H+INKIL RKKMEK+  G+    D  + Q  K+ +
Sbjct:   551 HQINKILTRKKMEKE-GGDVASLDAAEAQTPKRSK 584

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008380 "RNA splicing" evidence=IMP

FB|FBgn0037660 beag "beag" [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 4.7e-31, Sum P(2) = 4.7e-31
 Identities = 56/126 (44%), Positives = 75/126 (59%)

Query:   314 ESYSECYPGYQEYNREIVXXXXXXXXXXXXXGGRAKGRLHRWDFETEEEWATYNEQKEAM 373
             E Y+ECYPG +E N  I              G + KG + RWDF+T+EE++ Y   KEA+
Sbjct:   432 EGYAECYPGLEEMNDAIDDSDDEVDYTKMDLGNK-KGPIGRWDFDTQEEYSDYMSTKEAL 490

Query:   374 PKAAFQFGVKMQDGRKTRK----QNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDD- 428
             PKAAFQ+GVKMQDGRKTRK    +N+  +L  E  KI  I+ ++K+ KD  G G   D+ 
Sbjct:   491 PKAAFQYGVKMQDGRKTRKNKTEKNEKAELDREWQKIQTIIQKRKLPKDGGGGGAGGDEP 550

Query:   429 DVQPGK 434
             D +  K
Sbjct:   551 DYKSAK 556

GO:0003674 "molecular_function" evidence=ND

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0072553 "terminal button organization" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

UNIPROTKB|F1RGE2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 241 (89.9 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
 Identities = 59/149 (39%), Positives = 88/149 (59%)

Query:   278 QEEKDRGLGSVFKR---DDQRLLQLREKDAREKDPNF-ISESYSECYPGYQEYNREIVXX 333
             +EEK R   S F++   DD+ +L+ + +D ++    F +S SY+ECYP   +   ++   
Sbjct:   312 EEEKKRH--SYFEKPKVDDEHMLK-KPEDKKQLGDFFGMSNSYAECYPATMD---DMAVD 365

Query:   334 XXXXXXXXXXXGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTR-- 391
                         G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR  
Sbjct:   366 SDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRF 425

Query:   392 KQNKDQ-KLTNELHKINKILA-RKKMEKD 418
             K+  D+ +L  +  KI+ I+  RKKME D
Sbjct:   426 KETNDKAELDRQWKKISAIIEKRKKMEAD 454

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9P876 IK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
 Identities = 59/149 (39%), Positives = 88/149 (59%)

Query:   278 QEEKDRGLGSVFKR---DDQRLLQLREKDAREKDPNF-ISESYSECYPGYQEYNREIVXX 333
             +EEK R   S F++   DD+ +L+ + +D ++    F +S SY+ECYP   +   ++   
Sbjct:   306 EEEKKRH--SYFEKPKVDDEHMLK-KPEDKKQLGDFFGMSNSYAECYPATMD---DMAVD 359

Query:   334 XXXXXXXXXXXGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTR-- 391
                         G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR  
Sbjct:   360 SDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRF 419

Query:   392 KQNKDQ-KLTNELHKINKILA-RKKMEKD 418
             K+  D+ +L  +  KI+ I+  RKKME D
Sbjct:   420 KETNDKAELDRQWKKISAIIEKRKKMEAD 448

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-030131-960 ik "IK cytokine" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
 Identities = 47/111 (42%), Positives = 66/111 (59%)

Query:   312 ISESYSECYPGYQEYNREIVXXXXXXXXXXXXXGGRAKGRLHRWDFETEEEWATYNEQKE 371
             +S SY+ECYP   +   ++               G  KG L RWDF+T+EE++ Y   KE
Sbjct:   432 MSNSYAECYPATMD---DLAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSDYMNNKE 488

Query:   372 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKILA-RKKMEKD 418
             A+PKAAFQ+G+KM +GRKTR+    N+  +L  +  KI+ I+  RKKME D
Sbjct:   489 ALPKAAFQYGIKMSEGRKTRRFKETNEKAELDRQWKKISAIIEKRKKMEAD 539

GO:0005634 "nucleus" evidence=IEA

GO:0060047 "heart contraction" evidence=IMP

UNIPROTKB|F1NDF8 IK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 7.3e-30, Sum P(3) = 7.3e-30
 Identities = 49/129 (37%), Positives = 78/129 (60%)

Query:   296 LLQLREKDAREKDPNF--ISESYSECYPGYQEYNREIVXXXXXXXXXXXXXGGRAKGRLH 353
             ++ L++ + +++  +F  +S SY+ECYP   +   ++               G  KG L 
Sbjct:   419 VITLKKPEDKKQLGDFFGMSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLG 475

Query:   354 RWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTR--KQNKDQ-KLTNELHKINKIL 410
             RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR  K+  D+ +L  +  KI+ I+
Sbjct:   476 RWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAII 535

Query:   411 A-RKKMEKD 418
               RKK+E D
Sbjct:   536 EKRKKLEAD 544

GO:0005634 "nucleus" evidence=IEA

RGD|1359352 Ik "IK cytokine, down-regulator of HLA II" [Rattus norvegicus (taxid:10116)]

 Score = 222 (83.2 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
 Identities = 50/124 (40%), Positives = 73/124 (58%)

Query:   300 REKDAREKDPNF-ISESYSECYPGYQEYNREIVXXXXXXXXXXXXXGGRAKGRLHRWDFE 358
             + +D ++    F +S SY+ECYP   +   ++               G  KG L RWDF+
Sbjct:   428 KPEDKKQLGDFFGMSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFD 484

Query:   359 TEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTR--KQNKDQ-KLTNELHKINKILA-RKK 414
             T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR  K+  D+ +L  +  KI+ I+  RKK
Sbjct:   485 TQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKK 544

Query:   415 MEKD 418
             ME D
Sbjct:   545 MEAD 548

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1LSE1 Ik "Protein Red" [Rattus norvegicus (taxid:10116)]

 Score = 222 (83.2 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
 Identities = 50/124 (40%), Positives = 73/124 (58%)

Query:   300 REKDAREKDPNF-ISESYSECYPGYQEYNREIVXXXXXXXXXXXXXGGRAKGRLHRWDFE 358
             + +D ++    F +S SY+ECYP   +   ++               G  KG L RWDF+
Sbjct:   428 KPEDKKQLGDFFGMSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFD 484

Query:   359 TEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTR--KQNKDQ-KLTNELHKINKILA-RKK 414
             T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR  K+  D+ +L  +  KI+ I+  RKK
Sbjct:   485 TQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKK 544

Query:   415 MEKD 418
             ME D
Sbjct:   545 MEAD 548

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|K7GQD2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
 Identities = 50/124 (40%), Positives = 73/124 (58%)

Query:   300 REKDAREKDPNF-ISESYSECYPGYQEYNREIVXXXXXXXXXXXXXGGRAKGRLHRWDFE 358
             + +D ++    F +S SY+ECYP   +   ++               G  KG L RWDF+
Sbjct:   424 KPEDKKQLGDFFGMSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFD 480

Query:   359 TEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTR--KQNKDQ-KLTNELHKINKILA-RKK 414
             T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR  K+  D+ +L  +  KI+ I+  RKK
Sbjct:   481 TQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKK 540

Query:   415 MEKD 418
             ME D
Sbjct:   541 MEAD 544

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A4FUY8 IK "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
 Identities = 50/124 (40%), Positives = 73/124 (58%)

Query:   300 REKDAREKDPNF-ISESYSECYPGYQEYNREIVXXXXXXXXXXXXXGGRAKGRLHRWDFE 358
             + +D ++    F +S SY+ECYP   +   ++               G  KG L RWDF+
Sbjct:   426 KPEDKKQLGDFFGMSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFD 482

Query:   359 TEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTR--KQNKDQ-KLTNELHKINKILA-RKK 414
             T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR  K+  D+ +L  +  KI+ I+  RKK
Sbjct:   483 TQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKK 542

Query:   415 MEKD 418
             ME D
Sbjct:   543 MEAD 546

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	438
pfam07807	118	pfam07807, RED_C, RED-like protein C-terminal regi	4e-51
pfam07808	238	pfam07808, RED_N, RED-like protein N-terminal regi	3e-23

>gnl|CDD|203768 pfam07807, RED_C, RED-like protein C-terminal region

 Score =  168 bits (426), Expect = 4e-51
 Identities = 85/125 (68%), Positives = 97/125 (77%), Gaps = 11/125 (8%)

Query: 316 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPK 375
           Y+ECYPGY EYN EIVDSDDE D SKMD+G + KG L RWDFETEEE++ Y EQKEA+PK
Sbjct: 1   YAECYPGYLEYNDEIVDSDDEADYSKMDLGNK-KGPLGRWDFETEEEYSDYMEQKEALPK 59

Query: 376 AAFQFGVKMQDGRKTRKQN-KDQK--LTNELHKINKILARKKMEKDTNGEGGHYDDDVQP 432
           AAFQ+GVKMQDGRKTRKQ  KD+K  L  EL KINKILA++KMEKD  G GG  D     
Sbjct: 60  AAFQYGVKMQDGRKTRKQGPKDEKAELDRELQKINKILAKRKMEKD--GGGGGPD----- 112

Query: 433 GKKPR 437
            K+P+
Sbjct: 113 VKRPK 117

This family contains sequences that are similar to the C-terminal region of Red protein. This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently. Length = 118

>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region

 Score = 97.6 bits (243), Expect = 3e-23
 Identities = 43/94 (45%), Positives = 67/94 (71%), Gaps = 4/94 (4%)

Query: 2   AKSVYQWI--VKPQTVMKTNEMFLPGRMSFIFNTEGGYS-NDIPTTLHRSKADCPVPDEM 58
            K++++     + Q ++  NE+F PGRM+++F+ +     NDIPTTL RSKADCPV +E 
Sbjct: 146 GKNIFKQFQLQESQKIIN-NELFAPGRMAYVFDLDDEIDENDIPTTLIRSKADCPVIEED 204

Query: 59  VTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK 92
           VT++ + SVL+++ +I++YLR G+S K  KKKKK
Sbjct: 205 VTLTTNNSVLNKLTQILSYLRAGTSNKENKKKKK 238

This family contains sequences that are similar to the N-terminal region of Red protein. This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region, suggesting that these proteins are expressed in the nucleus. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
KOG2498	544	consensus IK cytokine down-regulator of HLA class	100.0
PF07807	118	RED_C: RED-like protein C-terminal region; InterPr	100.0
PF07808	238	RED_N: RED-like protein N-terminal region; InterPr	100.0
KOG2498	544	consensus IK cytokine down-regulator of HLA class	99.47

>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-97  Score=755.75  Aligned_cols=323  Identities=49%  Similarity=0.775  Sum_probs=288.1

Q ss_pred             ChhhHHHHHhcCCCcCcccccccCCceEEEEeCCCCCC-CCCcccccccccCCCC-CccceecccchHHHHHHHHHHHHH
Q 013692            1 MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYS-NDIPTTLHRSKADCPV-PDEMVTVSVDGSVLDRIAKIMTYL   78 (438)
Q Consensus         1 laRnIy~~lfk~k~~~~rNElFlPGRMAYVfDLdde~~-~DIPTTliRSKaDcP~-~ee~~t~~~ddiVI~KLaqImSYL   78 (438)
                      |+||||+.||+|+. .++|+||+|||||||++|++++. +||||||.||++|||+ .++..+++||++||++|.+|+|||
T Consensus       212 ~~r~~~~~l~~n~~-~~~n~Lf~~GrmaYVviLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~l  290 (544)
T KOG2498|consen  212 LGRNVYRVLFKNKE-DERNELFAPGRMAYVVILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYL  290 (544)
T ss_pred             hcchhhhHhhhccc-cccccccCCCCcceeeeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhh
Confidence            68999999999986 69999999999999999999987 9999999999999999 789999999999999999999999


Q ss_pred             hcCCCCcc-hhhhhhcccccccCcccccccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccccCCCCCCC
Q 013692           79 RLGSSGKV-LKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARS  157 (438)
Q Consensus        79 R~G~~gKk-~KKKkK~kd~~~~g~~~~~~~~~~~~~kp~~~~g~~~~~~~~~~~~Pp~~~~p~~~~~~~~e~~~~~~~~~  157 (438)
                      |+|.++|| ++|++|.+ ..+              ++                                        |.+
T Consensus       291 r~~~~~kK~~~krDk~k-~~~--------------~~----------------------------------------P~~  315 (544)
T KOG2498|consen  291 RAGDRNKKPLKKRDKPK-LYF--------------DK----------------------------------------PVE  315 (544)
T ss_pred             ccCCcccCccccccccc-ccc--------------cC----------------------------------------ccc
Confidence            99999998 77776665 110              00                                        125


Q ss_pred             CCCCccccCCccccCCCCCCCCCCCccccccCccccccCCCCCCCCCCCCCCCCCCccccccCcchHHHHHHhhcCCccc
Q 013692          158 EEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGE  237 (438)
Q Consensus       158 ~dd~IF~d~g~DY~vp~~~~~~s~~~ed~~~~~~~~~r~sYF~~p~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~e  237 (438)
                      .+.+||. +++|| ||+...+.                                  +.|+... |+++|.++...++.++
T Consensus       316 ~~~~iy~-~~g~Y-~P~~~s~~----------------------------------~~~~~ks-~~a~qdrg~d~~~d~e  358 (544)
T KOG2498|consen  316 GEKVIYE-DEGDY-VPSTPSAG----------------------------------SRDQGKS-YGAMQDRGRDRGRDRE  358 (544)
T ss_pred             ccccccc-ccccc-cCCCCCCC----------------------------------ccccccc-cchhhhcccCCCCcch
Confidence            5889996 55599 88742211                                  1243333 7888999999999999


Q ss_pred             chhhhhhhhhccccccccchhhhHhhhhCCCCCCCCccccHHHHhhccCccccchHHHHHHHHHhhhhcCCCCCCCCccc
Q 013692          238 WQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYS  317 (438)
Q Consensus       238 w~~y~~~~q~~~~~~~~~~~~~~y~~~~~~~~~~~p~~~~q~~k~~glgs~f~rdd~~l~q~re~~arekdp~~~sesYA  317 (438)
                      |+.|+++    |.++|+++++.+|....-   ..+|..|++++++++++++|.+++|+  |++|-.++++||-|+|+||+
T Consensus       359 ~~~~rd~----~r~r~lep~~~~~~~~~~---~l~p~q~skEe~~~~~~~~~~~~~~~--~~~eerkk~kd~~~vsegY~  429 (544)
T KOG2498|consen  359 RQRYRDA----NRDRYLEPGKEGYSYFEE---LLDPQQMSKEEKDRGLGIVSIREDQR--QKPEERKKEKDPFFVSEGYA  429 (544)
T ss_pred             hhhhhhh----hhhhhhccccccchhhhh---hcchhhhhhccccccccccccchhhh--hchhhHhhhccccccccchh
Confidence            9999998    577899999999887752   46899999999999999999999998  89999999999999999999


Q ss_pred             cccCChhhhhhcccCCCcccccccccCCCCCCCCccccccccHHHHHHHhHhhhhcchhhHhhccccccccccccc--ch
Q 013692          318 ECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ--NK  395 (438)
Q Consensus       318 ECYPG~~e~~~~i~DSDDE~DySKMD~Gn~~KGpl~RWDFdTeEEy~~Ym~~kEalPKAAfQyGvK~~dGrKtrk~--~~  395 (438)
                      |||||++|||++|||||||+||||||||| ||||||||||||||||++||++|||||||||||||||+|||||||+  |.
T Consensus       430 ECYPgl~em~hei~~SDeE~DysKMD~Gg-Kk~~l~RWDFdTeEEy~~Yme~kEAlPKAAfQyGvKm~dGRKtrkq~~~~  508 (544)
T KOG2498|consen  430 ECYPGLQEMNHEIVDSDEEVDYSKMDMGG-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMQDGRKTRKQKRND  508 (544)
T ss_pred             hhccchhhhcccccccccccchhhhhccC-CCCCccccCcccHHHHHHHhhhhhhchHHHHHhcccccccchhhhcccch
Confidence            99999999999999999999999999999 7999999999999999999999999999999999999999999998  57


Q ss_pred             hhHhHHHHHHHHHHHHhhhcccCCCCCCCCc
Q 013692          396 DQKLTNELHKINKILARKKMEKDTNGEGGHY  426 (438)
Q Consensus       396 ~~kLdre~~kI~~Il~krk~~~~~~~~~~~~  426 (438)
                      +|+|||||+|||+||+|||++++||++|+.|
T Consensus       509 ~~~Ldre~~~InkIi~krK~~~~ggggg~e~  539 (544)
T KOG2498|consen  509 KAELDRELHKINKIITKRKMEKDGGGGGAEY  539 (544)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCcccc
Confidence            8999999999999999999999999888443

>PF07807 RED_C: RED-like protein C-terminal region; InterPro: IPR012492 This family contains sequences that are similar to the C-terminal region of Red protein (Q13123 from SWISSPROT)

Probab=100.00  E-value=3.6e-59  Score=403.88  Aligned_cols=107  Identities=68%  Similarity=1.103  Sum_probs=101.8

Q ss_pred             cccccCChhhhhhcccCCCcccccccccCCCCCCCCccccccccHHHHHHHhHhhhhcchhhHhhccccccccccccc--
Q 013692          316 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ--  393 (438)
Q Consensus       316 YAECYPG~~e~~~~i~DSDDE~DySKMD~Gn~~KGpl~RWDFdTeEEy~~Ym~~kEalPKAAfQyGvK~~dGrKtrk~--  393 (438)
                      |||||||++||+++++|||||+||||||||| +||||+||||+|+|||++||++|||||||||||||||+|||||||+  
T Consensus         1 YAECYPg~~e~~~~~~DSDdE~D~skMD~G~-kkg~~~RwDFdT~EEy~~Y~~~kEalPKAAfQyGvKm~dGrKtrk~~~   79 (118)
T PF07807_consen    1 YAECYPGYMEYNDAIVDSDDEVDYSKMDMGN-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMADGRKTRKQGE   79 (118)
T ss_pred             CccccccHHHHhccccCCchhhHHhhhcccc-cCCCcccCCCCCHHHHHHHHhhhhhCcHHHHHhccccccccccccccc
Confidence            9999999999999999999999999999999 6999999999999999999999999999999999999999999996  


Q ss_pred             -chhhHhHHHHHHHHHHHHhhhcccCCCCCC
Q 013692          394 -NKDQKLTNELHKINKILARKKMEKDTNGEG  423 (438)
Q Consensus       394 -~~~~kLdre~~kI~~Il~krk~~~~~~~~~  423 (438)
                       +++++|||||++|++||++||++++|+..+
T Consensus        80 k~ek~kLdre~~kI~~Il~krk~~~~g~~~~  110 (118)
T PF07807_consen   80 KDEKAKLDREWQKIQKILKKRKAEKDGGGGG  110 (118)
T ss_pred             hhHHHHHhHHHHHHHHHHHHhcccCCCCCCC
Confidence             468899999999999999999888776544

This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently [].

>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT)

Probab=100.00  E-value=9.8e-35  Score=276.97  Aligned_cols=91  Identities=47%  Similarity=0.902  Sum_probs=85.1

Q ss_pred             ChhhHHHHH--hcCCCcCcccccccCCceEEEEeCCCCCC-CCCcccccccccCCCCCccceecccchHHHHHHHHHHHH
Q 013692            1 MAKSVYQWI--VKPQTVMKTNEMFLPGRMSFIFNTEGGYS-NDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY   77 (438)
Q Consensus         1 laRnIy~~l--fk~k~~~~rNElFlPGRMAYVfDLdde~~-~DIPTTliRSKaDcP~~ee~~t~~~ddiVI~KLaqImSY   77 (438)
                      +||+||++|  |+++. +.+||||+||||||||||++++. +||||||||||+|||.+++++++++|++||+||+|||||
T Consensus       145 ~~r~I~~~~~~~~~~~-~~~nelF~pGRMaYvfdL~~e~~~~DIPTTliRSK~Dcp~~~~~~t~~~n~~vi~kL~qilsy  223 (238)
T PF07808_consen  145 LARNIFKTLFQFKSKK-IERNELFLPGRMAYVFDLDDEYAESDIPTTLIRSKADCPVPEEQVTLTTNDIVINKLTQILSY  223 (238)
T ss_pred             HHHHHHHHHHhccccc-cccccccCCcceEEEEecCCCcccccCCCeeecchhhCccchheeccccchHHHHHHHHHHHH
Confidence            589999999  56765 57899999999999999999984 999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcchhhhhh
Q 013692           78 LRLGSSGKVLKKKKK   92 (438)
Q Consensus        78 LR~G~~gKk~KKKkK   92 (438)
                      ||+|++||++|||+|
T Consensus       224 lr~g~~~kk~KKk~k  238 (238)
T PF07808_consen  224 LRQGSRHKKNKKKKK  238 (238)
T ss_pred             HhcccchhhhhccCC
Confidence            999999999888865

This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus

>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]

Probab=99.47  E-value=2.2e-14  Score=148.64  Aligned_cols=192  Identities=27%  Similarity=0.263  Sum_probs=156.3

Q ss_pred             hhhHHHHHhcCCCcCcccccccCCceEEEEeCCCCCCCCCcccccccccCCCCCccceecccch--HHHHHHHHHHHHHh
Q 013692            2 AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDG--SVLDRIAKIMTYLR   79 (438)
Q Consensus         2 aRnIy~~lfk~k~~~~rNElFlPGRMAYVfDLdde~~~DIPTTliRSKaDcP~~ee~~t~~~dd--iVI~KLaqImSYLR   79 (438)
                      ++.+++|+.+.+.| ..+ +||+|+|-++..+..-...+|++++.+++++|+..++.++..+|+  .+...+.+|+++||
T Consensus       123 ~k~~~q~i~rrq~I-~eS-KfLGGDm~hTHLVkGLD~~LL~KVRse~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r  200 (544)
T KOG2498|consen  123 EKDKDQAIKRRQLI-QES-KFLGGDMEHTHLVKGLDYALLQKVRSEIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELR  200 (544)
T ss_pred             hhhhHHHHHHHHHH-HHh-hhcCCccceeeeecchhHHHHHHHHHHhhccCCchHHHhhhhccccccccchHHHHHHHHh
Confidence            56789999988765 444 999999999999998767999999999999999999999999999  99999999999999


Q ss_pred             cCCCCcchhhhhhcccccccCcccccccccccccCCCCCCCCCCCCCCccccCCCCCC-CCCCCCCc-cccccCCCCCCC
Q 013692           80 LGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPP-PPKKNHVD-SREKQGPIVARS  157 (438)
Q Consensus        80 ~G~~gKk~KKKkK~kd~~~~g~~~~~~~~~~~~~kp~~~~g~~~~~~~~~~~~Pp~~~-~p~~~~~~-~~e~~~~~~~~~  157 (438)
                      +|..++.++ +++.++..    ..+.-|++++...-....-.+..++.+.+++|+.+| ++..|+.+ .+..+.+++...
T Consensus       201 ~~e~~~~~~-~~~~r~~~----~~l~~n~~~~~n~Lf~~GrmaYVviLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~t  275 (544)
T KOG2498|consen  201 LGESGKVLK-KKLGRNVY----RVLFKNKEDERNELFAPGRMAYVVILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTT  275 (544)
T ss_pred             hchhhhhhh-hhhcchhh----hHhhhccccccccccCCCCcceeeeccccccCCCCCcccccccccccchhcccccccc
Confidence            999999999 66776543    233456666655555555666779999999987777 45667777 777888889999


Q ss_pred             CCCCccccCCccccCCCCCCCCCCCccccccCccccccCCCCCCCCCCCC
Q 013692          158 EEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPV  207 (438)
Q Consensus       158 ~dd~IF~d~g~DY~vp~~~~~~s~~~ed~~~~~~~~~r~sYF~~p~~~~~  207 (438)
                      .|+.||...+++|.++..+..+++      .+.|++.. +||++|+++..
T Consensus       276 nd~~I~kls~vls~lr~~~~~kK~------~~krDk~k-~~~~~P~~~~~  318 (544)
T KOG2498|consen  276 NDIVIFKLSQVLSYLRAGDRNKKP------LKKRDKPK-LYFDKPVEGEK  318 (544)
T ss_pred             ccHHHhhhhhhhhhhccCCcccCc------cccccccc-ccccCcccccc
Confidence            999999999999999987776664      24455555 78888776633

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00