Citrus Sinensis ID: 013719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNCQLPDKELKVRTTEKHKWIENSCHFDQELSINEELVQKEGSQQLGEETQKAAKTCQSPEEEIKVNPEKILEKKDRHSLSTEGTNKKRDKQKRADDKKKNGLLLSSLFKEK
Secondary Structure (PSIPRED)
cccccHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHEEEEEccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHccccccccccccHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcHHHHHHcccHcHHEEccHHHHHHccccccEcHHHHccccHHHHHHHHHHHHHHHcccccccccccccHcccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHccHHHHHHHHHHcccccccccccccHHEEcccccccccccccccccccHHHHcHcccccccccccccccccHHccccccEEEccccccccccEcccHHHccccccccccccccHHHHHccc
Coil and Loop (DISEMBL)
MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDqqagkitaenPMMLMRLFFNLdklvscdrpadyTLWVGLLSFHQalvsdpqdAFVVWVFASVLYHGKWKEGVKFARDrakepvkfvpeisgfseiesDEQLAVKVTELALSVQDCVNDltkassgyvfVSKKIERNVQQIFDVLVNSIEsynsgkrshiidydmlgkgnlvETRFVLGKIILKTIsgglvageeeideeempevldkdSVENYLAKknrkrglqpssAELKLKTAKKCKWTEKFSSINhelsmnkedvvpkEEVEEIHKAVKncqlpdkelkVRTTEKHkwienschfdqelSINEELVQKEGSQQLGEETQKAAKtcqspeeeikvnpekilekkdrhslstegtnkkrdkqkraddkkknglLLSSLFKEK
Flexible Loop (DISEMBL)
MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFArdrakepvkfvpeisgfseiesdEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTisgglvageeeideeempevldkdsVENYLAkknrkrglqpssaelklktakkckwtekfssinhelsmnkedVVPKEEVEEIHKavkncqlpdkelkVRTTEKHKWIENSCHFDQELSINEELVQKEGSQQLGEETQKaaktcqspeeeikvnpekilekkdrhslstegtnkkrdkqkraddkkknglllsslfkek
Low Complexity Region (SEG)
MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICllrrynllkillPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGeeeideeempeVLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNkedvvpkeeveeIHKAVKNCQLPDKELKVRTTEKHKWIENSCHFDQELSINEELVQKEGSQQLGEETQKAAKTCQSPEEEIKVNPEKILEKKDRHSLSTEGTNkkrdkqkraddkkkNGLLLSSLFKEK
Disordered region (IsUnstruct)
***************IMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVA**********************************************CKWT*****************************VKNCQL****LKVRTTEKHKWIENSCHFDQ***********************************************************************************
Disordered Region (DISOPRED)
******S***LDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL**************LMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISG****ESDEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQQIFDVLVN****************DMLGKGNLVETRFVLGKIILKTISGGLV******************************************************************************************************************************************************************************************SSLFK**
Disordered Region (DISEMBL)
********ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEE*********VLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNCQLPDKELKVRTTEKHKWIENSCHFDQELSINEELVQKE*********************EIKVNPEKILEKK**********************KKKNGLLLSSLFKEK
Disordered Region (DISPRO)
MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYLAK*NR****QPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNCQLPDKELKVRTT***********************QKEGS******TQKAAKTCQSPEEEIKV**EKILEK**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNCQLPDKELKVRTTEKHKWIENSCHFDQELSINEELVQKEGSQQLGEETQKAAKTCQSPEEEIKVNPEKILEKKDRHSLSTEGTNKKRDKQKRADDKKKNGLLLSSLFKEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
255561389	675	poly(A) polymerase, putative [Ricinus co	0.780	0.505	0.522	6e-91
224084064	458	predicted protein [Populus trichocarpa]	0.540	0.515	0.584	5e-75
449456945	810	PREDICTED: uncharacterized protein LOC10	0.933	0.503	0.396	2e-72
357484075	675	Poly(A) polymerase [Medicago truncatula]	0.739	0.478	0.444	6e-68
356495323	714	PREDICTED: uncharacterized protein LOC10	0.750	0.459	0.445	7e-68
26449498	571	putative poly(A) polymerase [Arabidopsis	0.581	0.444	0.462	4e-59
42569106	757	polynucleotide adenylyltransferase-like	0.581	0.335	0.462	1e-58
297832374	761	polynucleotide adenylyltransferase famil	0.542	0.311	0.486	4e-58
449495173	647	PREDICTED: uncharacterized LOC101212579	0.807	0.545	0.366	2e-55
357120849	553	PREDICTED: poly(A) polymerase-like [Brac	0.546	0.432	0.450	9e-47

>gi|255561389|ref|XP_002521705.1| poly(A) polymerase, putative [Ricinus communis] gi|223539096|gb|EEF40692.1| poly(A) polymerase, putative [Ricinus communis]

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 196/375 (52%), Positives = 249/375 (66%), Gaps = 34/375 (9%)

Query: 1   MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKI 60
           +  LSSS++ LDK+RIMMELNYMLSYGAAES+I LL+R+NLL++ LPFHAAYL QQAG+ 
Sbjct: 256 IRKLSSSVKSLDKARIMMELNYMLSYGAAESTIYLLQRFNLLELFLPFHAAYLSQQAGET 315

Query: 61  TAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHG 120
            +   +MLM+LFFNLD LVSCDRP   +LWVGLL+FHQALV++PQDA V WVFASVLYHG
Sbjct: 316 FSLGSVMLMKLFFNLDTLVSCDRPCTSSLWVGLLAFHQALVTNPQDALVSWVFASVLYHG 375

Query: 121 KWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDL------- 173
           KWK+GV+FAR+ AK  VKF PEISGFSE +SDE+LA +V+ LA  VQD V+ L       
Sbjct: 376 KWKDGVEFARENAKMQVKFAPEISGFSEFKSDEELAEEVSHLASLVQDSVDALMDTDTLA 435

Query: 174 -------TKASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVE 226
                    +SSG VFVSKKI  +V Q+F+VLV+ +ESY + + S +IDY +LGKGN  E
Sbjct: 436 QSMSRFGVTSSSGLVFVSKKIANDVAQLFNVLVDDVESYKTERESFMIDYYLLGKGNQHE 495

Query: 227 TRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDK-------DSVENYLAK-KNRKRGLQ 278
           TRFVLGK+IL+T+SGGL  G E    E+ P+V+++       D V++Y+ + K     L 
Sbjct: 496 TRFVLGKVILETLSGGLTKGVEV--AEDGPKVIEEKHDSKLSDLVKDYMVEWKEEIPVLS 553

Query: 279 PSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEI----HKAVKNCQLPDKE 334
           P   E   K     +      S   E    KEDV+ K + E +     K +K  QLP+ E
Sbjct: 554 PLDHEHSQKKTGNKRKLVMTKSFYEEKVATKEDVL-KNKSEAVAKKPQKILKITQLPELE 612

Query: 335 LKVRTTEKHKWIENS 349
            K     KH   ENS
Sbjct: 613 KK-----KHHLSENS 622

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084064|ref|XP_002307206.1| predicted protein [Populus trichocarpa] gi|222856655|gb|EEE94202.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/255 (58%), Positives = 188/255 (73%), Gaps = 19/255 (7%)

Query: 4   LSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAE 63
           L SS++ L+K RI MELNYMLSYGAAES+I LL+R++LLKI LPFHAAYL +QA +++A+
Sbjct: 209 LQSSVKSLNKDRIKMELNYMLSYGAAESTILLLQRFHLLKIFLPFHAAYLHEQADEVSAQ 268

Query: 64  NPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWK 123
              MLM+L ++LDK+VS DRP D +LWVGLL+FHQALV +PQDAFV+W FAS+LY G W+
Sbjct: 269 GSTMLMKLLYSLDKIVSSDRPCDCSLWVGLLAFHQALVLNPQDAFVIWAFASILYCGTWQ 328

Query: 124 EGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKASS----- 178
           EGVKFAR+ AK   +FVPEISGFSEI+SDE+LA +V++LA  VQD VN  T   S     
Sbjct: 329 EGVKFARENAKVEGRFVPEISGFSEIKSDEKLAEEVSQLASLVQDAVNAFTDEISLSESL 388

Query: 179 ---------GYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRF 229
                     +VFVSKKI  +   +F      ++S    + S  IDYD+L KG+L ETRF
Sbjct: 389 SRYLDPPLDVFVFVSKKIGEHAGLLF-----HMQSCEYRRESFKIDYDLLVKGDLYETRF 443

Query: 230 VLGKIILKTISGGLV 244
           VLGK+ILKT+SGGLV
Sbjct: 444 VLGKVILKTLSGGLV 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456945|ref|XP_004146209.1| PREDICTED: uncharacterized protein LOC101212579 [Cucumis sativus]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 184/464 (39%), Positives = 259/464 (55%), Gaps = 56/464 (12%)

Query: 1   MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKI 60
           +H  S SI  LDKSR+MMELNYMLSYGAA  S+ LL+R+ LL  LLPFHAAYLD+Q  + 
Sbjct: 280 IHKFSPSITSLDKSRLMMELNYMLSYGAAVPSLYLLQRFKLLGSLLPFHAAYLDKQGIEK 339

Query: 61  TAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHG 120
           ++ + +MLM+LFFNLDKLVSC  P++  +WV LL+FH ALV++PQ++ VV  FA+ LYHG
Sbjct: 340 SSLSSVMLMKLFFNLDKLVSCAHPSNCNIWVALLAFHLALVNNPQNSLVVLAFAATLYHG 399

Query: 121 KWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLT------ 174
           +W EGV +AR+++   +   PEI+  ++ +S+E+LA  VT  AL VQ C+  LT      
Sbjct: 400 EWNEGVNYAREKSLVEINLRPEITRSAKFKSEEKLAEGVTRFALKVQGCIAALTSKDCLL 459

Query: 175 --------KASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKG-NLV 225
                    ++SG VFVS K  R+V  IF+VL   ++SY   K+   IDY  LGKG  L 
Sbjct: 460 EAMSTFPASSNSGLVFVSNKTARDVAIIFEVLAKHVKSYKDEKKDFKIDYKRLGKGLFLR 519

Query: 226 ETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLD-----------KDSVENYLAKKNRK 274
           E R+VLGKIIL+T+   ++ G E I +      +D            D V+  L K N+K
Sbjct: 520 ENRYVLGKIILETLEDAILQGNENIPDRNQNLRIDAPTKETSDSPVADLVQEQLVKGNKK 579

Query: 275 RGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNCQLPDKE 334
              +PS +E++LK  KK K   K  SI+ ++  N   +      E   K V+  QLP   
Sbjct: 580 VRKRPSVSEVELKANKKYKLVRKEGSISDKVVENGRCI---NMTEMYKKGVEGSQLPLAP 636

Query: 335 LKVRTTEKHKWIENS--CHFDQELSINEELVQKEGSQQLGEETQK--AAKTCQSPEEE-- 388
           ++    E  + I  S  CH    L +      +E  + +G E +K    K  Q   +E  
Sbjct: 637 ME----ESMEPILESRKCH---HLEVRATENMRENPESMGNEVKKIIPKKAFQKVTKELL 689

Query: 389 --IKVNPEKI---------LEKKDRHSLSTEGTNKKRDKQKRAD 421
             +++NP K+          EKK+ H +S     KK  K+KR D
Sbjct: 690 HPVEINPRKMDKVAGQEVKSEKKEHHRVS---QGKKNIKKKRRD 730

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484075|ref|XP_003612324.1| Poly(A) polymerase [Medicago truncatula] gi|355513659|gb|AES95282.1| Poly(A) polymerase [Medicago truncatula]

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/340 (44%), Positives = 214/340 (62%), Gaps = 17/340 (5%)

Query: 3   SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITA 62
           + SS +E L+K R+M+E+NYMLSYGAAE S+ LL ++ LL+ LLP  AAYLD+QA K  A
Sbjct: 227 TCSSLVEDLNKDRMMIEMNYMLSYGAAEPSLRLLWKFKLLQFLLPVQAAYLDEQATKEDA 286

Query: 63  ENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKW 122
           ++  MLM+LFF++D LV C RP+D TLW+GLL+FH ALV++PQDA VVW FASVLYHG W
Sbjct: 287 QDSNMLMKLFFHMDNLVGCGRPSDCTLWIGLLAFHLALVNNPQDALVVWAFASVLYHGDW 346

Query: 123 KEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVN------DLTKA 176
           + G+KFA++ AK  V F PEI   S  +SDE +A  VT+LA  V D ++       L+++
Sbjct: 347 EGGIKFAKEHAKMSVNFEPEIKRSSICKSDEDIAEAVTKLASLVIDSIHPLVNIESLSQS 406

Query: 177 SSGY---------VFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVET 227
            S Y         + VSKK  + V +IF+VLVN I+ Y S ++S  I+YDMLG G+  ET
Sbjct: 407 LSRYPSVPPPHMVLVVSKKTGKAVSEIFEVLVNDIKFYKSERKSAKINYDMLGSGHTSET 466

Query: 228 RFVLGKIILKTISGGLVAGEEEIDEEEM-PEVLDKDSVENYLAKKNRKRGLQPSSAELKL 286
           RFVLGKI+L+T+  G++   +    E+  P+          + ++++++ L   + E + 
Sbjct: 467 RFVLGKIVLQTMQSGIIGDADGFGTEKCHPDTEGTKDFGQLVTREDKRKVLSTPNLEHRP 526

Query: 287 KTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVK 326
           +  KK K  E  + I  + +   E    KE  EE  K VK
Sbjct: 527 QKLKKQKLAEN-ACIEEQKTGLDEFCKYKETNEEHQKPVK 565

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495323|ref|XP_003516528.1| PREDICTED: uncharacterized protein LOC100794882 [Glycine max]

 Score =  264 bits (674), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 163/366 (44%), Positives = 217/366 (59%), Gaps = 38/366 (10%)

Query: 1   MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKI 60
           M   SS ++ LDK++IM+ELNYMLSYGAAE S+ LL ++ LL+ LLP HAAYLD+QA K 
Sbjct: 259 MWKYSSLVKSLDKNKIMIELNYMLSYGAAEPSLHLLWKFKLLEFLLPVHAAYLDEQAIKE 318

Query: 61  TAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHG 120
            A    MLM+LFF LD LV+CDRP D TLWVGLL+FH  LV++PQDA VVW FASVLYHG
Sbjct: 319 DAPASNMLMKLFFYLDNLVACDRPCDCTLWVGLLAFHLTLVNNPQDALVVWAFASVLYHG 378

Query: 121 KWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCV------NDLT 174
           +W++G+KFA++ AK  V F PEI   S  +SDE++A  VT+LA  V   +      N L 
Sbjct: 379 EWEKGIKFAKEHAKMYVNFAPEIRTSSIYKSDEEIAKAVTKLASLVMHSIPALVESNSLL 438

Query: 175 KASSGY--------VFVSKKIERNVQQIFDVLVNSIESYNSGKRSHI-IDYDMLGKGNLV 225
           ++ S Y        +FV KK  +    IF +L + +E Y + +R +  I+Y MLGKG+L 
Sbjct: 439 QSMSRYPSFPQSDMIFVPKKAGKLASAIFKMLASDVEFYKTERRKNSKINYGMLGKGHLS 498

Query: 226 ETRFVLGKIILKTISGGLVA---------------GEEEIDEEEMPEVLDKDSV----EN 266
           E  FVLGKI+L+T+S G V                G +EI + ++P++++ +      E 
Sbjct: 499 EIAFVLGKIVLETMSSGTVGDGEDSEAGQCHLKTEGTKEIAQSQLPDLVNHEVAAMNGEG 558

Query: 267 YLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVK 326
           +L         Q  S + KL    +C   +K SS N ELS   E    KE  EE  K VK
Sbjct: 559 HLLSIPNSECRQGKSKKRKL-VKNRCIAKKKMSSGNQELS---EKFEYKENKEEQQKLVK 614

Query: 327 NCQLPD 332
             Q  D
Sbjct: 615 LSQKVD 620

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26449498|dbj|BAC41875.1| putative poly(A) polymerase [Arabidopsis thaliana]

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 128/277 (46%), Positives = 171/277 (61%), Gaps = 23/277 (8%)

Query: 6   SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENP 65
           SS+  LD+ R++ME+NYML+YGAA  SI LL ++ LL +LLPF AAYLDQ A K +  + 
Sbjct: 94  SSVANLDQFRLIMEMNYMLAYGAAAPSILLLMKFKLLHVLLPFQAAYLDQ-ASKTSLSSS 152

Query: 66  MMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEG 125
           +ML+RLF N+DKLVSCD+PAD  LW+ +L+FH ALV +PQ+A VV  FA++LYHG W + 
Sbjct: 153 LMLVRLFSNMDKLVSCDQPADPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYHGNWSKA 212

Query: 126 VKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKAS-------- 177
           V+FAR+     + + PE+S  S   SDE LA  V+E    ++D    LT           
Sbjct: 213 VEFAREHGTSVIGYAPEVSKSSRKRSDEDLAEAVSEFTCLLKDTQYVLTDKEALREALYL 272

Query: 178 ------SGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVL 231
                 SG VF+ KK  R+V + F + ++ +ESY S K    IDY +LGKGN  E RFVL
Sbjct: 273 YPDFKFSGLVFIPKKKGRDVAEGF-MRLSDVESYESQKEGFSIDYVLLGKGNPCEVRFVL 331

Query: 232 GKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYL 268
           GKIIL TI+ G V        E +  V  K S  N++
Sbjct: 332 GKIILDTITEGTVI-------EPLNSVKKKQSTRNHI 361

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569106|ref|NP_179349.2| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] gi|330251561|gb|AEC06655.1| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana]

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/277 (46%), Positives = 171/277 (61%), Gaps = 23/277 (8%)

Query: 6   SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENP 65
           SS+  LD+ R++ME+NYML+YGAA  SI LL ++ LL +LLPF AAYLDQ A K +  + 
Sbjct: 280 SSVANLDQFRLIMEMNYMLAYGAAAPSILLLMKFKLLHVLLPFQAAYLDQ-ASKTSLSSS 338

Query: 66  MMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEG 125
           +ML+RLF N+DKLVSCD+PAD  LW+ +L+FH ALV +PQ+A VV  FA++LYHG W + 
Sbjct: 339 LMLVRLFSNMDKLVSCDQPADPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYHGNWSKA 398

Query: 126 VKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKAS-------- 177
           V+FAR+     + + PE+S  S   SDE LA  V+E    ++D    LT           
Sbjct: 399 VEFAREHETSVIGYAPEVSKSSRKRSDEDLAEAVSEFTCLLKDTQYVLTDKEALREALYL 458

Query: 178 ------SGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVL 231
                 SG VF+ KK  R+V + F + ++ +ESY S K    IDY +LGKGN  E RFVL
Sbjct: 459 YPDFKFSGLVFIPKKKGRDVAEGF-MRLSDVESYESQKEGFSIDYVLLGKGNPCEVRFVL 517

Query: 232 GKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYL 268
           GKIIL TI+ G V        E +  V  K S  N++
Sbjct: 518 GKIILDTITEGTVI-------EPLNSVKKKQSTRNHI 547

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832374|ref|XP_002884069.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329909|gb|EFH60328.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 162/253 (64%), Gaps = 16/253 (6%)

Query: 6   SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENP 65
           SS+  LD+ R++ME+NYML+YGAA  SI LL ++ LL +LLPF AAYLDQ A + +  + 
Sbjct: 284 SSVANLDQFRLIMEMNYMLAYGAAAPSILLLMKFKLLHVLLPFQAAYLDQ-ASETSLSSS 342

Query: 66  MMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEG 125
           +ML+RLF N+DKLVSCD+PAD  LW+ +L+FH ALV +PQ+A VV  FA++LYH  W + 
Sbjct: 343 LMLVRLFSNMDKLVSCDQPADPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYHRNWSKA 402

Query: 126 VKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKAS-------- 177
           VKFAR+     V + PE+S FS   SDE LA  V+E    ++D    LT           
Sbjct: 403 VKFAREHETSVVGYAPEVSKFSRKRSDEDLAEAVSEFTCLLKDTQYVLTDIEALREALYL 462

Query: 178 ------SGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVL 231
                 SG VF+ K+  R+V +    L + +ESY S K    IDY +LGKGN  E RFVL
Sbjct: 463 YPDFKFSGLVFIPKRKGRDVAEGLARL-SDVESYESKKEGFSIDYLLLGKGNPCEVRFVL 521

Query: 232 GKIILKTISGGLV 244
           GKIIL TI+ G+V
Sbjct: 522 GKIILDTITEGIV 534

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495173|ref|XP_004159755.1| PREDICTED: uncharacterized LOC101212579 [Cucumis sativus]

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 153/418 (36%), Positives = 221/418 (52%), Gaps = 65/418 (15%)

Query: 1   MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKI 60
           +H  S SI  LDKSR+MMELNYMLSYGAA  S+ LL+R+ LL  LLPFHAAYLD+Q  + 
Sbjct: 204 IHKFSPSITSLDKSRLMMELNYMLSYGAAVPSLYLLQRFKLLGSLLPFHAAYLDKQGIEK 263

Query: 61  TAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHG 120
           ++ + +MLM+LFFNLDKLVSC  P++  +WV LL+FH ALV++PQ++ VV  FA+ LYHG
Sbjct: 264 SSLSSVMLMKLFFNLDKLVSCAHPSNCNIWVALLAFHLALVNNPQNSLVVLAFAATLYHG 323

Query: 121 KWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLT------ 174
           +W EGV +AR+++   +   PEI+  ++ +S+E+LA  VT  AL VQ C+  LT      
Sbjct: 324 EWNEGVNYAREKSLVEINLRPEITRSAKFKSEEKLAEGVTRFALKVQGCIAALTSKDCLL 383

Query: 175 --------KASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVE 226
                    ++SG VFVS K  R+V  IF+VL     + N   R+  +  D         
Sbjct: 384 EAMSTFPASSNSGLVFVSNKTARDVAIIFEVLAKH-GNENIPDRNQNLRID--------- 433

Query: 227 TRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYLAKKNRKRGLQPSSAELKL 286
                             A  +E  +  +      D V+  L K N+K   +PS +E++L
Sbjct: 434 ------------------APTKETSDSPV-----ADLVQEQLVKGNKKVRKRPSVSEVEL 470

Query: 287 KTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNCQLPDKELKVRTTEKHKWI 346
           K  KK K   K  SI+ ++  N   +      E   K V+  QLP   ++    E  + I
Sbjct: 471 KANKKYKLVRKEGSISDKVVENGRCI---NMTEMYKKGVEGSQLPLAPME----ESMEPI 523

Query: 347 ENS--CHFDQELSINEELVQKEGSQQLGEETQK--AAKTCQSPEEE----IKVNPEKI 396
             S  CH    L +      +E  + +G E +K    K  Q   +E    +++NP K+
Sbjct: 524 LESRKCH---HLEVRATENMRENPESMGNEVKKIIPKKAFQKVTKELLHPVEINPRKM 578

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357120849|ref|XP_003562137.1| PREDICTED: poly(A) polymerase-like [Brachypodium distachyon]

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 115/255 (45%), Positives = 150/255 (58%), Gaps = 16/255 (6%)

Query: 1   MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKI 60
           +  LSSSI  +DKSR+ ME+ YMLS+GAAESSI LL +Y LL ILLP  AAYL  Q    
Sbjct: 265 IRDLSSSIINIDKSRLAMEMKYMLSHGAAESSIRLLGKYGLLDILLPLQAAYLSHQIKGQ 324

Query: 61  TAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHG 120
           +++  +MLM+L  NLDKL S DRP   +LW+ LL+FH ALV+ PQDA V+  FAS++Y G
Sbjct: 325 SSDRNLMLMKLLANLDKLTSADRPCHCSLWLALLAFHSALVNSPQDAQVIKAFASLMYFG 384

Query: 121 KWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLT------ 174
            W   +KF +     PV FVPE    S  + +  L  K + LA  V   V+ LT      
Sbjct: 385 TWDSTIKFLKQDTGAPVTFVPEALQPSGTKLN-NLMEKTSHLASLVNCSVDTLTCLDALQ 443

Query: 175 -------KAS--SGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLV 225
                  KAS  SG VFVS K    +  IF  L + +  Y+  +  H I+Y +L  G+  
Sbjct: 444 QSLARYPKASQFSGLVFVSNKERSRILGIFKGLDSDLSLYDGRRGMHGINYKLLDDGHTG 503

Query: 226 ETRFVLGKIILKTIS 240
           E RFVLGK+I+ T+S
Sbjct: 504 EVRFVLGKVIMDTMS 518

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
TAIR|locus:2053913	757	AT2G17580 [Arabidopsis thalian	0.542	0.313	0.462	1.1e-51
TAIR|locus:2171641	527	AT5G23690 [Arabidopsis thalian	0.542	0.449	0.312	2.6e-25
TAIR|locus:2010439	541	AT1G28090 [Arabidopsis thalian	0.389	0.314	0.375	1.1e-21
TAIR|locus:2099473	881	AT3G48830 [Arabidopsis thalian	0.469	0.232	0.292	1.2e-15

TAIR|locus:2053913 AT2G17580 [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
 Identities = 117/253 (46%), Positives = 154/253 (60%)

Query:     6 SSIERLDKSRIMMELNYMLSYGAAESSICXXXXXXXXXXXXPFHAAYLDQQAGKITAENP 65
             SS+  LD+ R++ME+NYML+YGAA  SI             PF AAYLDQ A K +  + 
Sbjct:   280 SSVANLDQFRLIMEMNYMLAYGAAAPSILLLMKFKLLHVLLPFQAAYLDQ-ASKTSLSSS 338

Query:    66 MMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEG 125
             +ML+RLF N+DKLVSCD+PAD  LW+ +L+FH ALV +PQ+A VV  FA++LYHG W + 
Sbjct:   339 LMLVRLFSNMDKLVSCDQPADPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYHGNWSKA 398

Query:   126 VKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKAS-------- 177
             V+FAR+     + + PE+S  S   SDE LA  V+E    ++D    LT           
Sbjct:   399 VEFAREHETSVIGYAPEVSKSSRKRSDEDLAEAVSEFTCLLKDTQYVLTDKEALREALYL 458

Query:   178 ------SGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVL 231
                   SG VF+ KK  R+V + F + ++ +ESY S K    IDY +LGKGN  E RFVL
Sbjct:   459 YPDFKFSGLVFIPKKKGRDVAEGF-MRLSDVESYESQKEGFSIDYVLLGKGNPCEVRFVL 517

Query:   232 GKIILKTISGGLV 244
             GKIIL TI+ G V
Sbjct:   518 GKIILDTITEGTV 530

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2171641 AT5G23690 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 2.6e-25, P = 2.6e-25
 Identities = 79/253 (31%), Positives = 126/253 (49%)

Query:     3 SLSSSIERLDKSRIMMELNYMLSYGAAESSICXXXXXXXXXXXXPFHAAYLDQQAGKITA 62
             +LS  ++RLDK RI+ME+NYML+YG+AE+S+             P  AAYL +   +   
Sbjct:   266 NLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKFGILEILLPIQAAYLARSGFRRRD 325

Query:    63 ENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GK 121
             +   ML+ LF NLDKL++ DRP   +LW+ +L+FH+AL   P+   VV  F+  +++ G 
Sbjct:   326 KRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKALADKPRSPIVVAAFSLAVHNCGD 385

Query:   122 WKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLT------K 175
               E V+  +   +   K   E+    E    + L  +V +L  S++D +N +T      K
Sbjct:   386 ILEAVEITKKITRPHDKSFFELVEPEENLDFQTLLDEVMDLDASIEDALNQMTDAYFISK 445

Query:   176 ASSGY--------VFVSKKIERNVQQIFDVLVNSIESYN-SGKRSHIIDYDMLGKGNLVE 226
             A S Y        VF+  ++     +IFD + N         K+   I+Y  L  G   E
Sbjct:   446 AMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRIGFEAKQGSKIEYGSLNSGYFPE 505

Query:   227 TRFVLGKIILKTI 239
              R V  +++  T+
Sbjct:   506 IRHVFARVVFDTV 518

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0006396 "RNA processing" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

TAIR|locus:2010439 AT1G28090 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 65/173 (37%), Positives = 96/173 (55%)

Query:     4 LSSSIERLDKSRIMMELNYMLSYGAAESSICXXXXXXXXXXXXPFHAAYLDQQAGKITAE 63
             LSSS+ RLD SRI ME+NYML+YG+AE+S+             P  A+YL  Q  +    
Sbjct:   283 LSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFGLMEILLPIQASYLVSQGFRRRDG 342

Query:    64 NPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHG-KW 122
                ML+ LF NLD+LV+ DRP    LW+G+L+FH+ALV  P+D  VV  F   +Y     
Sbjct:   343 RSNMLLSLFRNLDRLVAPDRPCSEFLWIGILAFHKALVDQPRDPTVVASFCLAIYSEVSL 402

Query:   123 KEGVKFARDRAKEPVKFVPEISGFSE--IESDEQLAVKVTELALSVQDCVNDL 173
              E +  AR  +K+      E+S   +   +S+ +++ +V +LA S++     L
Sbjct:   403 SEAIAIARSNSKQHNSHFQELSSPEKDTADSESKISQQVIKLAESIRSAARKL 455

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

TAIR|locus:2099473 AT3G48830 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 62/212 (29%), Positives = 111/212 (52%)

Query:     1 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICXXXXXXXXXXXXPFHAAYLDQQAGKI 60
             + +LS  ++RL + RI++E+NYML+YG+AE+S+             P  AAYL +   K 
Sbjct:   260 LKNLSFLVQRLHRGRILLEMNYMLAYGSAEASLRLLWKFGILEILLPIQAAYLVRTGFKR 319

Query:    61 TAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHG 120
               +   +L+ LF NLDKL++ D+P   +LW+ +L+ H+AL   P+   VV  F+  +++G
Sbjct:   320 RDKRSNLLLSLFGNLDKLLAPDKPCHSSLWLTILALHKALADQPRYPSVVAAFSLAVHNG 379

Query:   121 -KWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKASSG 179
                 E VK  R   K   +   E+    E++S + L  +V +   S+++ +  +T     
Sbjct:   380 GDVLEAVKNTRKVTKPHNRSFFELLEPEEMDS-QTLLDEVMDFDSSIKEALGQMTDGR-- 436

Query:   180 YVFVSKKIERNVQQIF-DVLVNSIESYNSGKR 210
               F+SK +    Q  + D++   ++ Y   +R
Sbjct:   437 --FISKAMAAYPQAPYSDMVFIPLQLYLDARR 466


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      437       388   0.00093  117 3  11 23  0.43    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  250 KB (2135 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.71u 0.08s 32.79t   Elapsed:  00:00:01
  Total cpu time:  32.71u 0.08s 32.79t   Elapsed:  00:00:01
  Start:  Sat May 11 16:02:18 2013   End:  Sat May 11 16:02:19 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
pfam12627	64	pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB-	4e-09
COG0617	412	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A)	0.002

>gnl|CDD|221674 pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB- binding site of polymerase A

 Score = 52.4 bits (127), Expect = 4e-09
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 1  MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 53
          +  L+  ++++   RI  EL  +L  G     + LLR   LL+ L P   A L
Sbjct: 12 IRELAPLLKKISPERIFEELLKLLLSGHPSRGLELLRETGLLEYLFPELDALL 64

This region encompasses much of the RNA and SrmB binding motifs on polymerase A. Length = 64

>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 15  RIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFN 74
           R+  EL  +L       ++ LLR Y  LKIL P            +       +  L  N
Sbjct: 197 RLWDELKKLLLSPNPREALQLLREYGALKILFPELDKLFGVPKLLLALR---EIELLLHN 253

Query: 75  LDKLVSCDRPADYTLWVGLLSFH 97
            D+L+           +   +  
Sbjct: 254 TDELLLALAALLPAFLLAAATLP 276

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
KOG2159	416	consensus tRNA nucleotidyltransferase/poly(A) poly	99.94
PRK11623	472	pcnB poly(A) polymerase I; Provisional	98.32
TIGR01942	410	pcnB poly(A) polymerase. This model describes the	98.16
PF12627	64	PolyA_pol_RNAbd: Probable RNA and SrmB- binding si	97.94
PRK13298	417	tRNA CCA-pyrophosphorylase; Provisional	94.63
COG0617	412	PcnB tRNA nucleotidyltransferase/poly(A) polymeras	94.02
PRK13299	394	tRNA CCA-pyrophosphorylase; Provisional	93.05
PRK10885	409	cca multifunctional tRNA nucleotidyl transferase/2	90.42
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	84.81
TIGR02692	466	tRNA_CCA_actino tRNA adenylyltransferase. The enzy	80.75

>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.4e-28  Score=246.65  Aligned_cols=187  Identities=24%  Similarity=0.255  Sum_probs=170.4

Q ss_pred             CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHH-hhhhhhhhhhhHhhhhhcccccCCCchhHHHHHHhhcCcccC
Q 013719            2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR-YNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVS   80 (437)
Q Consensus         2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWR-fGLLeiLLPfQAAYl~~q~~~r~~~rSnMLL~Lf~nLDklva   80 (437)
                      ++.+..+.++++.||.|||||||+||+|++||+|||| +|+..|++|.|++|...|++.++++++||++++|.||++.++
T Consensus       207 k~~~~~~~kIS~ERI~~Ei~kmL~g~~~~~~L~ll~~~~~~~~i~lp~~~s~~~f~~~~~~~~~s~~~~sl~~~l~~~~~  286 (416)
T KOG2159|consen  207 KENVALLAKISRERIGVEINKMLVGNSAEASLRLLWRLFGFEYIFLPIEASLEEFQGFNRRDGFSNEPLSLLANLDKSLA  286 (416)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHcCCcHHHHHHHHHHhcCceEEeccchhhhhhccccccccccchhHHHHHhccccccc
Confidence            4567889999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHhhhCCCchHHHHHHHHHHhcCchHHhhHHHHhhcCCCCCCCccccCCCcccchH--HHHHH
Q 013719           81 CDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDE--QLAVK  158 (437)
Q Consensus        81 pdRPC~~sLWvglLAfH~ALV~~PqDplVV~aFasaly~G~w~eaVkfAr~~ak~~~~ffPEll~ps~~ksde--~L~ee  158 (437)
                      +++|||..+|+++++||.++.++|+.|+|+|+++++.+..  .+++.+.+.+.+++++++.++..+.....+.  .+-..
T Consensus       287 ~~~~~~~~l~l~~~~~~~~~~~~~r~~~v~~~~~~~~~~~--~~~~~i~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  364 (416)
T KOG2159|consen  287 PDEPCHLRLKLSILELLKKFIDQPRFPTVPAVSSSAPLSK--LQDVEIPKKIEKDHDRLRQLLVSQEKNELDNETLLDWS  364 (416)
T ss_pred             ccchhhhhHHHHHHhhhhHhhccccccceeeeecccchhh--hhhhhcccccccchHHHHHHhcchHhhhhHHHHHhhhc
Confidence            9999999999999999999999999999999999999887  8999999999999999999998887743322  23344


Q ss_pred             HHHHHHHHHHHHHHhhc--------------cCCCcEEEehhhHHH
Q 013719          159 VTELALSVQDCVNDLTK--------------ASSGYVFVSKKIERN  190 (437)
Q Consensus       159 Vs~LAssVkdal~~mT~--------------p~SdLVFIp~~~~lr  190 (437)
                      +..+.+++++++..+|.              |.+|+||++...+..
T Consensus       365 ~~~~~~~i~~~~~~~~~~~~~~g~llr~l~~~w~~~~~~~~~~~~l  410 (416)
T KOG2159|consen  365 VPDFPISINDLAIEGTSKGSIIGALLRYLQAPWSDSVFTSLKDSLL  410 (416)
T ss_pred             cCchHHHHHHHHHhhcccchhHHHHHHhhhhhHHHHHhHHHHHHHh
Confidence            89999999999999994              468888888876653

>PRK11623 pcnB poly(A) polymerase I; Provisional

Probab=98.32  E-value=7.7e-07  Score=92.13  Aligned_cols=93  Identities=17%  Similarity=0.303  Sum_probs=77.6

Q ss_pred             CCcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhhhhcccccCCCchhHHHHHHhhcCcccC
Q 013719            1 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVS   80 (437)
Q Consensus         1 ~~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl~~q~~~r~~~rSnMLL~Lf~nLDklva   80 (437)
                      |++++..+..+++.||..|++.||..|.+..++++|+.||||+.|+|..++++..+...   ...+||...+.|.|+.++
T Consensus       238 I~~~a~lL~~vs~eRI~~El~KlL~~~~~~~~~~lL~e~GLl~~lfPel~~~~~~~~~~---~~~~~~~~~l~~tD~ri~  314 (472)
T PRK11623        238 IPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDS---PMERIIEQVLKNTDTRIH  314 (472)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHhcccccc---HHHHHHHHHHHHHHHHHh
Confidence            34567788999999999999999999999999999999999999999999999754322   235799999999999999


Q ss_pred             CCCCCC-chhHHHHHHH
Q 013719           81 CDRPAD-YTLWVGLLSF   96 (437)
Q Consensus        81 pdRPC~-~sLWvglLAf   96 (437)
                      .+.|.. ..|+.++|-.
T Consensus       315 ~~~~v~p~fl~a~llw~  331 (472)
T PRK11623        315 NDMRVNPAFLFAAMFWY  331 (472)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            999864 4444555543

>TIGR01942 pcnB poly(A) polymerase

Probab=98.16  E-value=1.9e-06  Score=87.79  Aligned_cols=92  Identities=20%  Similarity=0.268  Sum_probs=77.7

Q ss_pred             CCcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhhhhcccccCCCchhHHHHHHhh-cCccc
Q 013719            1 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFN-LDKLV   79 (437)
Q Consensus         1 ~~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl~~q~~~r~~~rSnMLL~Lf~n-LDklv   79 (437)
                      |++++..+..+++.||..|+..||..|.+..++++|+++|||+.++|-.+++|.....    ....++...+.| .|+.+
T Consensus       193 I~~~a~~L~~vs~eRI~~El~Kll~~~~~~~~l~~L~~~gll~~lfPel~~~l~~~~~----~~~~~~~~~l~~~~d~r~  268 (410)
T TIGR01942       193 IRESAPLLKGIPPARLFEEILKLLFSGRSAALFRMLCGYQLLEPLFPSVAYALRESPK----FESAFTVQALVNDTDFRV  268 (410)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHHhcCCc----hHHHHHHHHHHhhhHHHH
Confidence            3456677889999999999999999999999999999999999999999988775322    234467777888 99999


Q ss_pred             CCCCCCCchhHHHHHHH
Q 013719           80 SCDRPADYTLWVGLLSF   96 (437)
Q Consensus        80 apdRPC~~sLWvglLAf   96 (437)
                      +.++||...+..++|-+
T Consensus       269 ~~~~~v~p~fl~a~ll~  285 (410)
T TIGR01942       269 KRDKPVTPAFLYAALLW  285 (410)
T ss_pred             hCCCCCCHHHHHHHHhH
Confidence            99999998877777766

This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).

>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A

Probab=97.94  E-value=6e-06  Score=61.78  Aligned_cols=52  Identities=27%  Similarity=0.340  Sum_probs=45.5

Q ss_pred             CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhh
Q 013719            2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL   53 (437)
Q Consensus         2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl   53 (437)
                      ++.+..+..+.+.||..|++.||..+.+..++++|+.+|+++.++|-.+++|
T Consensus        13 ~~~~~~L~~is~ERi~~El~kil~~~~~~~~~~~l~~~gll~~ifP~l~~a~   64 (64)
T PF12627_consen   13 KENAELLSKISKERIREELEKILSSPNPSRAFKLLDELGLLEYIFPELDAAL   64 (64)
T ss_dssp             HHHGGGGGGS-HHHHHHHHHHHHTSTTHHHHHHHHHHTTCHHHHSTTHHT--
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHCccccccC
Confidence            4556688999999999999999999999999999999999999999987764

...

>PRK13298 tRNA CCA-pyrophosphorylase; Provisional

Probab=94.63  E-value=0.095  Score=54.31  Aligned_cols=46  Identities=24%  Similarity=0.188  Sum_probs=42.2

Q ss_pred             chhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHh
Q 013719            6 SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA   51 (437)
Q Consensus         6 sSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAA   51 (437)
                      ..+..+.+.||..|++.+|..+.....+++|+.+|+|+.++|=-.+
T Consensus       167 ~~l~~~s~ERI~~El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~~  212 (417)
T PRK13298        167 HELLYLTPERIWNETEKALKTDNPHVYFQVLYECNALKFLFPEIDF  212 (417)
T ss_pred             hhhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcchHH
Confidence            5678899999999999999999999999999999999999996544

>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

Probab=94.02  E-value=0.023  Score=56.71  Aligned_cols=52  Identities=25%  Similarity=0.420  Sum_probs=46.0

Q ss_pred             cccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhhh
Q 013719            3 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD   54 (437)
Q Consensus         3 ~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl~   54 (437)
                      .....+..+...||..|+..||..+-+..++++|+.+|++++++|....++.
T Consensus       185 ~~~~~~~~is~ERi~~El~KlL~~~~~~~~l~~l~~~g~l~~l~p~~~~~~~  236 (412)
T COG0617         185 LMAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILFPELDKLFG  236 (412)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChhhcChhHHHhhc
Confidence            3455666788999999999999999999999999999999999999998543

>PRK13299 tRNA CCA-pyrophosphorylase; Provisional

Probab=93.05  E-value=0.051  Score=55.12  Aligned_cols=46  Identities=22%  Similarity=0.264  Sum_probs=41.3

Q ss_pred             CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhh
Q 013719            2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF   48 (437)
Q Consensus         2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPf   48 (437)
                      ++.+..+..+.+.||..|+++||..+.+..+|++|+++|+|.. +|.
T Consensus       182 ~~~~~~l~~vs~eRI~~El~kll~~~~~~~~l~~l~~~gll~~-~p~  227 (394)
T PRK13299        182 KTQAPLLEKISVERIFVEFEKLLLGPFWRKGLKLLIETGLYNY-LPG  227 (394)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHCChHHh-Ccc
Confidence            3455677889999999999999999999999999999999999 785

>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed

Probab=90.42  E-value=1.4  Score=45.21  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=40.3

Q ss_pred             hhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHh
Q 013719            7 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA   51 (437)
Q Consensus         7 SV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAA   51 (437)
                      .+..+...||..|+.-+|..+.....+++|..+|+|..++|--++
T Consensus       168 ~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~  212 (409)
T PRK10885        168 ELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDA  212 (409)
T ss_pred             hhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHH
Confidence            455678899999999999999999999999999999999996544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=84.81  E-value=2.4  Score=30.90  Aligned_cols=41  Identities=17%  Similarity=0.304  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhhhCCCchHHHHHHHHHHhc-C-chHHhhHHHHh
Q 013719           91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-G-KWKEGVKFARD  131 (437)
Q Consensus        91 vglLAfH~ALV~~PqDplVV~aFasaly~-G-~w~eaVkfAr~  131 (437)
                      -++..|.+|+..+|.++.+....|.+.+. | ++.+|++...+
T Consensus        21 ~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen   21 EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            48889999999999999999999988765 9 79999998775

...

>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase

Probab=80.75  E-value=0.97  Score=46.50  Aligned_cols=46  Identities=26%  Similarity=0.348  Sum_probs=40.5

Q ss_pred             cchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhH
Q 013719            5 SSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA   50 (437)
Q Consensus         5 SsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQA   50 (437)
                      +..+..+.+.||..|+..+|..+.+...|++|+.+|+|..++|--+
T Consensus       199 ~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~glL~~~~Pe~~  244 (466)
T TIGR02692       199 ADQIERISAERVRVELDKLLLGDHPRAGIDLMVETGLADRVLPEIP  244 (466)
T ss_pred             HHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhhhhhhcCchHH
Confidence            3456667889999999999999999999999999999999999643

The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	437
3aql_A	415	Poly(A) polymerase; transferase/RNA, ATP-binding,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 1   MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKI 60
           +  L++ +  +  + +  E   +L  G    +  LL  Y+L + L P    Y  +     
Sbjct: 204 IPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDS- 262

Query: 61  TAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 100
                 ++ ++  N D  +  D   +       + ++  L
Sbjct: 263 --PMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLL 300

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 5e-07
 Identities = 53/366 (14%), Positives = 108/366 (29%), Gaps = 77/366 (21%)

Query: 1   MHSLSSSIERLDKSRIMMELNYMLSYG----AAESSICLLRRYNLLKILLPFHAAYLDQQ 56
              L  ++  L  ++ ++ ++ +L  G    A +        Y +    + F   +L+ +
Sbjct: 137 YLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDV----CLSYKVQC-KMDFKIFWLNLK 190

Query: 57  AGKITAENPMMLMRLFFNLDK--LVSCDRPADYTLWVG--------LLSFHQ---ALV-- 101
                     ML +L + +D       D  ++  L +         LL        L+  
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 102 SDPQDAFVVWVFA---SVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVK 158
            + Q+A     F     +L   ++K+   F        +         +  E    L  K
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-K 309

Query: 159 VTELALSVQDCVNDLTK-ASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIID-- 215
             +          DL +   +        I  +++       N  +  N  K + II+  
Sbjct: 310 YLDCR------PQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESS 362

Query: 216 YDMLGKGNLVETRFV-LG------KIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYL 268
            ++L +       F  L        I    +S  +     + D   +   L K S    L
Sbjct: 363 LNVL-EPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYS----L 416

Query: 269 AKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNC 328
            +K  K                         SI   + +  E  V  E    +H+++ + 
Sbjct: 417 VEKQPKEST---------------------ISI-PSIYL--ELKVKLENEYALHRSIVDH 452

Query: 329 -QLPDK 333
             +P  
Sbjct: 453 YNIPKT 458

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 70/429 (16%), Positives = 128/429 (29%), Gaps = 108/429 (25%)

Query: 19  ELNYMLSYGAAESSICLLRRYNLLKILLP--------FHAAYLDQQ----AGKITAEN-- 64
           E+++++    A S         L   LL         F    L          I  E   
Sbjct: 50  EIDHIIMSKDAVS-----GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 65  PMMLMRLFFN-LDKLVSCDRP-ADYTLW--VGLLSFHQALVSDPQDAFVVWVFASVLY-- 118
           P M+ R++    D+L + ++  A Y +      L   QAL+       V+      +   
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL------IDGV 158

Query: 119 --HGKWKEGVKFARDRAKEPVKFVPEIS--GFSEIESDEQLAVKVTELALSVQDCVNDLT 174
              GK    +        +  K   +I         S E +   + +L          + 
Sbjct: 159 LGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVLEMLQKLLY-------QID 210

Query: 175 KASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHII-D--YDMLGKGNLVETRFVL 231
              +     S  I+  +  I   L   ++S    +   ++     +           F L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQN----AKAWNA-FNL 264

Query: 232 G-KIILKT----ISGGLVAGEE-EIDEEEMPEVLDKDSVENYLAK--KNRKRGLQPSSAE 283
             KI+L T    ++  L A     I  +     L  D V++ L K    R + L P    
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVL 323

Query: 284 ----LKLKT-AKKCK-----W-------TEKF-----SSINH-----------ELSMNKE 310
                +L   A+  +     W        +K      SS+N             LS+   
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 311 DV-VP------------KEEVEEIHKAVKNCQLPDKELKVRTTEKHK-WIENSCHFDQEL 356
              +P            K +V  +   +    L +K+ K  T      ++E     + E 
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 357 SINEELVQK 365
           +++  +V  
Sbjct: 444 ALHRSIVDH 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
3aql_A	415	Poly(A) polymerase; transferase/RNA, ATP-binding,	96.78
1ou5_A	448	TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas	90.91
3h38_A	441	TRNA nucleotidyl transferase-related protein; tran	90.56
1vfg_A	390	A-adding enzyme, poly A polymerase; transferase, R	89.29
1miw_A	404	TRNA CCA-adding enzyme; tRNA nucleotidyltransferas	86.01
2l6j_A	111	TPR repeat-containing protein associated with HSP;	84.88
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	81.21
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	80.68

>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A

Probab=96.78  E-value=0.00049  Score=68.03  Aligned_cols=81  Identities=17%  Similarity=0.251  Sum_probs=58.6

Q ss_pred             CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhhhhcccccCCCchhHHHHHHhhcCcccCC
Q 013719            2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSC   81 (437)
Q Consensus         2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl~~q~~~r~~~rSnMLL~Lf~nLDklvap   81 (437)
                      ++.+..+..+...||..|++.||..+.+...|++|.++|||..++|--++.+...   .....-.++...+.++|+.+..
T Consensus       205 ~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL~~~lPe~~~i~~~~---q~~h~~~v~~h~L~~~d~~i~~  281 (415)
T 3aql_A          205 PRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTEN---GDSPMERIIEQVLKNTDTRIHN  281 (415)
T ss_dssp             HHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCSTTTCHHHHTTCCSS---SCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhchhHHHHhccC---CcchHHHHHHHHHHHHHHHHhc
Confidence            3445667778899999999999999999999999999999999999888775421   1111234455555556655444


Q ss_pred             CCCC
Q 013719           82 DRPA   85 (437)
Q Consensus        82 dRPC   85 (437)
                      +.|.
T Consensus       282 ~~~~  285 (415)
T 3aql_A          282 DMRV  285 (415)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            4443

>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4

Probab=90.91  E-value=0.1  Score=52.10  Aligned_cols=48  Identities=19%  Similarity=0.278  Sum_probs=42.7

Q ss_pred             CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhh-hhhh
Q 013719            2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL-LPFH   49 (437)
Q Consensus         2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiL-LPfQ   49 (437)
                      ++.+..+..+...||..|++.+|..+.....|++|+.+|+|..+ +|--
T Consensus       238 ~~~~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~~i~lPe~  286 (448)
T 1ou5_A          238 AENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPAN  286 (448)
T ss_dssp             HHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTCCCC
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHCCCceEecCcch
Confidence            34456677889999999999999999999999999999999999 9954

>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*

Probab=90.56  E-value=0.15  Score=51.16  Aligned_cols=43  Identities=26%  Similarity=0.371  Sum_probs=39.7

Q ss_pred             chhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhh
Q 013719            6 SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF   48 (437)
Q Consensus         6 sSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPf   48 (437)
                      ..+..+...||.+|++.||..+.+..+|++|+.+|+|..++|-
T Consensus       207 ~~l~~is~eRi~~El~kll~~~~~~~~l~~l~~~glL~~i~Pe  249 (441)
T 3h38_A          207 GYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPK  249 (441)
T ss_dssp             THHHHSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTHHHHHSTT
T ss_pred             chhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhCcc
Confidence            4566788999999999999999999999999999999999995

>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4

Probab=89.29  E-value=0.16  Score=49.34  Aligned_cols=42  Identities=17%  Similarity=0.281  Sum_probs=39.0

Q ss_pred             hhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhh
Q 013719            7 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF   48 (437)
Q Consensus         7 SV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPf   48 (437)
                      .+..+...||..|+..+|..+.....|++|+++|+|..++|-
T Consensus       183 ~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~lPe  224 (390)
T 1vfg_A          183 LLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEG  224 (390)
T ss_dssp             GGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTT
T ss_pred             hhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHh
Confidence            466788999999999999999999999999999999999995

>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*

Probab=86.01  E-value=0.28  Score=48.10  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=39.4

Q ss_pred             cccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhh
Q 013719            3 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF   48 (437)
Q Consensus         3 ~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPf   48 (437)
                      +.+..+..+...||..|++.||..+.....|++|+++|+|.. ||-
T Consensus       182 ~~~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~-lPe  226 (404)
T 1miw_A          182 QNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY-LPG  226 (404)
T ss_dssp             HHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS-STT
T ss_pred             HHHhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhh-Ccc
Confidence            345567778899999999999999999999999999999998 574

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=84.88  E-value=1.7  Score=30.67  Aligned_cols=47  Identities=13%  Similarity=0.239  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719           88 TLWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK  134 (437)
Q Consensus        88 sLWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak  134 (437)
                      ..--++-.|.+|+..+|.++.+....|.+++ .|++.+|++..++-..
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A           19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3455788999999999999999888887775 4999999998877443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=81.21  E-value=2.5  Score=32.64  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719           91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR  132 (437)
Q Consensus        91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~  132 (437)
                      -|+-.|.+||..+|.++.+..-.|.+.+. |++.+|++..++-
T Consensus        26 ~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A           26 KAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            47889999999999999888888877764 9999999887653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=80.68  E-value=2.7  Score=32.67  Aligned_cols=42  Identities=14%  Similarity=0.228  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719           91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR  132 (437)
Q Consensus        91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~  132 (437)
                      -++-.|.+||..+|.++.+..-.|.+++. |++.+|++..++-
T Consensus        31 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A           31 TAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence            47778888888888888888777777654 8888888876653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1miwa1	265	tRNA CCA-adding enzyme, C-terminal domains {Bacill	95.26
d1vfga1	215	Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6	94.81
d1ou5a1	204	tRNA CCA-adding enzyme, C-terminal domains {Human	94.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	83.9

>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.26  E-value=0.0076  Score=50.16  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=38.9

Q ss_pred             cccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhh
Q 013719            3 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL   45 (437)
Q Consensus         3 ~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiL   45 (437)
                      +.+..+..+.+.||.+|++.||+.+.+..++++|.++||++++
T Consensus        43 ~~~~~l~~vS~ERI~~El~kil~~~~~~~~l~~l~~~gl~~~l   85 (265)
T d1miwa1          43 QNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAYL   85 (265)
T ss_dssp             HHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTSS
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHCChHHhC
Confidence            4456788999999999999999999999999999999988865

>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.81  E-value=0.0092  Score=49.01  Aligned_cols=41  Identities=17%  Similarity=0.330  Sum_probs=39.0

Q ss_pred             hhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhh
Q 013719            7 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP   47 (437)
Q Consensus         7 SV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLP   47 (437)
                      .+..+.+.||.+|+..+|..+.+..+|++|-++|++++++|
T Consensus        47 ~l~~ls~eRI~~E~~kil~~~~~~~~l~~l~~~~ll~~l~p   87 (215)
T d1vfga1          47 LLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIE   87 (215)
T ss_dssp             GGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHST
T ss_pred             ccCCCCHHHHHHHHHHHHhcchHHHHHHHHHHhChHHHHCc
Confidence            47789999999999999999999999999999999999998

>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=94.79  E-value=0.0044  Score=53.05  Aligned_cols=49  Identities=14%  Similarity=0.123  Sum_probs=43.4

Q ss_pred             CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhH
Q 013719            2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA   50 (437)
Q Consensus         2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQA   50 (437)
                      ++.+..+..|.+.||.+|+..||+++.+...|.+|+.+|++.++.|.+.
T Consensus        45 ~~~~~~L~~lS~ERI~~El~Kil~~~~~~~~l~~m~~~gil~~i~~~~~   93 (204)
T d1ou5a1          45 AENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPAN   93 (204)
T ss_dssp             HHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTCCCC
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhccCHHHHHHHHHHCChHHHhCchhH
Confidence            3456678899999999999999999999999999999999998866543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.90  E-value=0.8  Score=33.80  Aligned_cols=40  Identities=13%  Similarity=0.231  Sum_probs=21.4

Q ss_pred             HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719           92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD  131 (437)
Q Consensus        92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~  131 (437)
                      +|-.|+.||..+|.++.+.-..|.++.. |++.+|+....+
T Consensus        22 Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   62 (117)
T d1elwa_          22 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK   62 (117)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhh
Confidence            4555555555555555544444444433 555555555444