Citrus Sinensis ID: 013722

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPARSFFFTNFFKGRSFQSFKLIKSCS
Secondary Structure (PSIPRED)
cccHHHHHHHcccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccEEEEEcccccccEEEEEcccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccHHHEEEcccccccccHHHHHHHHHccccHccccccccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccEEEccccccccccccccEEccc
Coil and Loop (DISEMBL)
MDDEFAKLIrrmnpprvvidndvceHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAyissdggyLMDVFYVTdingqkigdqATISYIKTTVETNASFLNSMRssvgvvpskeytsieltgtdrpgllSEVSAVLTDLSCSVVSAEIWTHNARAAALLHvkdqssgcaieDQKRLLKIKKLLCNVLrtngdlrtpsmsisSARVLHGERRLHQMLfadrdferldcvnynsrphvtildcsdrdytavtirskdrpkllFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKhvdgfpissEAERQRVMACLEAAIERRASeglelelytddrfgLLSDITRILREYGLCIRRAEistmgrkvkDTFFvtdasgnpvdpkivdSIQHQIGRTILQvkgnlntppklpqeparsffftnffkgrsfqsFKLIKSCS
Flexible Loop (DISEMBL)
MDDEFAKlirrmnpprvvidndVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSieltgtdrpgLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLrtngdlrtpsmsissarvlhgERRLHQMLFADRDFERLDCVNynsrphvtildcsdrdytavtirskdrpklLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRaseglelelytddrfgllSDITRILREYGLCIRraeistmgrkvkdtffvtdasgnpvdpKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPARSFFFTNFFKGRSFQSFKLIKSCS
Low Complexity Region (SEG)
MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPARSFFFTNFFKGRSFQSFKLIKSCS
Disordered region (IsUnstruct)
********IRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRT***SISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNL***********RSFFFTNFFKGRSFQSFKLI****
Disordered Region (DISOPRED)
*DDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNY**********CSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFP**S*****RVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV**KIVDSIQHQIGRTI**************************FKGRSFQSFKLIKSC*
Disordered Region (DISEMBL)
MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPARSFFFTNFFKGRSFQSFKLIKSCS
Disordered Region (DISPRO)
MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN*****SMRSSVGV*PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGN***********ARSFFFTNFFKGRSFQSFKLIKSCS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPARSFFFTNFFKGRSFQSFKLIKSCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	437	2.2.26 [Sep-21-2011]
Q98C27	933	[Protein-PII] uridylyltra	yes	no	0.176	0.082	0.423	6e-10
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.194	0.089	0.404	1e-09
A4XWU3	899	[Protein-PII] uridylyltra	yes	no	0.393	0.191	0.269	1e-09
A4VJR9	900	[Protein-PII] uridylyltra	yes	no	0.398	0.193	0.247	1e-09
Q53245	948	[Protein-PII] uridylyltra	N/A	no	0.167	0.077	0.415	2e-09
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.130	0.060	0.365	4e-09
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.123	0.057	0.397	6e-09
B0KS97	900	[Protein-PII] uridylyltra	yes	no	0.398	0.193	0.238	2e-08
Q1I624	900	[Protein-PII] uridylyltra	yes	no	0.405	0.196	0.234	3e-08
A5VN81	934	[Protein-PII] uridylyltra	yes	no	0.155	0.072	0.402	4e-08

>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain MAFF303099) GN=glnD PE=3 SV=1

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 50/78 (64%)

Query: 14  PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
           PPR  I N +    +VI+V+ ++R G+L E+   L DL+L I  A+I++ G  ++D FYV
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892

Query: 74  TDINGQKIGDQATISYIK 91
           TD+ GQKI   A I+ I+
Sbjct: 893 TDLTGQKIDSPARIATIR 910

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Rhizobium loti (strain MAFF303099) (taxid: 266835)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 4/89 (4%)

Query: 10  RRMN----PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGG 65
           RRM     PPRVVIDN   +  TVI+V+  +R G+L +V   L   +L I+ A+I++ G 
Sbjct: 847 RRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGM 906

Query: 66  YLMDVFYVTDINGQKIGDQATISYIKTTV 94
             +DVFYV D+ G KI D   ++ ++ T+
Sbjct: 907 RAVDVFYVRDLLGMKITDPVRLARLRETL 935

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain ymp) GN=glnD PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 43/215 (20%)

Query: 232 NSRPHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-A 287
           +S P V I + + R++   T + I + D+      TV  ++ +   ++   ++T   +  
Sbjct: 686 DSGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFT 745

Query: 288 YQEYYIKHVDGFPISSEAERQRVM--ACLEAA---------IERRASEGLE--------- 327
              Y +   DG  I     R + +    +EA          I+RR    L+         
Sbjct: 746 LDTYVVLDADGGSIGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQVT 805

Query: 328 -----------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
                      LEL   DR GLL+ I RI  EY L ++ A+I+T+G +V+D FFVTDA+ 
Sbjct: 806 IHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANN 865

Query: 377 NPV-DPKIVDSIQHQIGRTILQVKGNLNTPPKLPQ 410
            P+ DP++   +Q  I R        L+ P   PQ
Sbjct: 866 QPLSDPELCARLQETIVR-------RLSEPSAQPQ 893

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=glnD PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 36/210 (17%)

Query: 232 NSRPHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-A 287
           N  P V I + + R++   T + I + D+      TV  +  +   ++   ++T   +  
Sbjct: 686 NGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFT 745

Query: 288 YQEYYIKHVDGFPISSEAER-QRVMACLEAA----------IERRASEGLE--------- 327
              Y +   DG PI +  ER + + + L AA          I+RR    L+         
Sbjct: 746 LDTYIVLEADGSPIGNNPERIEEIRSGLIAALRNPDDYLTIIQRRVPRQLKHFAFPPQVT 805

Query: 328 -----------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
                      LE+   DR GLL+ + ++  ++ L ++ A+I+T+G +V+D FFVTDA  
Sbjct: 806 IHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADN 865

Query: 377 NPV-DPKIVDSIQHQIGRTILQVKGNLNTP 405
            P+ DP++   +Q  I + + Q      +P
Sbjct: 866 QPLSDPQLCLRLQQAIIKELQQENEQQPSP 895

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas stutzeri (strain A1501) (taxid: 379731)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 49/77 (63%)

Query: 14  PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
           PP V+I N +    TVI+V+ ++R G+L E+   L DL+L I  A I++ G  ++D FYV
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884

Query: 74  TDINGQKIGDQATISYI 90
            D+ GQKI ++   +YI
Sbjct: 885 ADLVGQKISNENRRAYI 901

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium tropici (taxid: 398)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 51/82 (62%)

Query: 14  PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
           PPRV++DN   +  TVI+++  +R G L  V + L D+ + I+ A +S+ G  ++D FYV
Sbjct: 825 PPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYV 884

Query: 74  TDINGQKIGDQATISYIKTTVE 95
            D+ G KI  +A ++ I+  +E
Sbjct: 885 KDVFGMKIVHRAKLAQIREALE 906

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%)

Query: 14  PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
           PPRV+IDN+     TVI+V+  +R G+L ++ + L +L L I+ A IS+ G   +DVFYV
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903

Query: 74  TDINGQKIGDQATISYIK 91
            D+ G K+  +  ++ I+
Sbjct: 904 KDVFGLKVTHENKLAQIR 921

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain GB-1) GN=glnD PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 36/210 (17%)

Query: 235 PHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-AYQE 290
           P V I + + R++   T + I + D+      TV  ++ +   ++   ++T   +     
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748

Query: 291 YYIKHVDGFPISSEAER-QRVMACLEAA----------IERRASEGLE------------ 327
           Y +   DG  I    +R +++   L  A          I+RR    L+            
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808

Query: 328 --------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
                   LE+   DR GLL+ + RI  E+ L ++ A+I+T+G +V+D FF+TDA   P+
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868

Query: 380 -DPKIVDSIQHQIGRTILQVKGNLNTPPKL 408
            DP++   +Q  I + +   +G+  +P ++
Sbjct: 869 SDPQLCSRLQEAIVQQLQAGQGSDTSPTRV 898

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas putida (strain GB-1) (taxid: 76869)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila (strain L48) GN=glnD PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 36/213 (16%)

Query: 232 NSRPHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-A 287
           +S P V I + + R++   T + I + D+      TV  +  +   ++   ++T   +  
Sbjct: 686 DSGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFT 745

Query: 288 YQEYYIKHVDGFPISSEAER-----------QRVMACLEAAIERRASEGLE--------- 327
              Y +   DG  I    +R            R      A I+RR    L+         
Sbjct: 746 LDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRTPEDYPAIIQRRVPRQLKHFDFPPQVT 805

Query: 328 -----------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
                      LE+   DR GLL+ I RI  E+ + ++ A+I+T+G +V+D FF+TDA  
Sbjct: 806 ILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADN 865

Query: 377 NPV-DPKIVDSIQHQIGRTILQVKGNLNTPPKL 408
            P+ DP++   +Q  I + +   + +  +P ++
Sbjct: 866 QPLSDPQLCSRLQEAIIQQLQAGQASEASPSRM 898

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas entomophila (strain L48) (taxid: 384676)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%)

Query: 15  PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
           PRV I+N +    TVI+V+ ++R G+L E+   + DL+L I  A+I++ G  ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 75  DINGQKIGDQATISYIK 91
           D+ G KI +      IK
Sbjct: 894 DLVGHKISNATRQGNIK 910

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) (taxid: 444178)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
225456388	440	PREDICTED: uncharacterized protein LOC10	1.0	0.993	0.731	0.0
147858899	440	hypothetical protein VITISV_043834 [Viti	1.0	0.993	0.725	0.0
225451503	440	PREDICTED: uncharacterized protein LOC10	0.997	0.990	0.696	0.0
357503685	442	Amino acid binding protein, putative [Me	1.0	0.988	0.667	1e-170
255543679	443	amino acid binding protein, putative [Ri	0.997	0.984	0.664	1e-169
255540149	452	amino acid binding protein, putative [Ri	0.995	0.962	0.657	1e-168
224143611	439	predicted protein [Populus trichocarpa]	0.990	0.986	0.663	1e-168
356571573	445	PREDICTED: uncharacterized protein LOC10	1.0	0.982	0.651	1e-167
224055763	441	predicted protein [Populus trichocarpa]	0.990	0.981	0.660	1e-166
356561659	445	PREDICTED: uncharacterized protein LOC10	1.0	0.982	0.647	1e-166

>gi|225456388|ref|XP_002280377.1| PREDICTED: uncharacterized protein LOC100256112 [Vitis vinifera] gi|297734456|emb|CBI15703.3| unnamed protein product [Vitis vinifera]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/440 (73%), Positives = 370/440 (84%), Gaps = 3/440 (0%)

Query: 1   MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
           MDDE+AKLIRRMNPPRVVIDND C HATVI+VDS NRHGILL+V+Q L DLNL+ITKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDSCGHATVIEVDSANRHGILLQVVQVLTDLNLIITKAYI 60

Query: 61  SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIE 120
           SSDGG+ MDVF VTD +G K+ D+  ++Y++ T+ET A FLNS+R SVGV+PSKE TSIE
Sbjct: 61  SSDGGWFMDVFNVTDHDGNKLRDEEILNYLQKTLETEAGFLNSLRGSVGVMPSKEDTSIE 120

Query: 121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
           LTG+DRPGLLSEVSAVLTDL C+VV+AEIWTHNARAAA++HV DQ++GCAIED KRL  I
Sbjct: 121 LTGSDRPGLLSEVSAVLTDLRCNVVNAEIWTHNARAAAVIHVTDQATGCAIEDPKRLSMI 180

Query: 181 KKLLCNVLRTNGDLRTPSMSISSAR--VLHGERRLHQMLFADRDFERLDCV-NYNSRPHV 237
           KK L NV + N   RTP M+ISS     ++ +RRLHQM+FA RDFERL+ V + NSRPHV
Sbjct: 181 KKRLGNVFKGNSSFRTPKMTISSPGPVAMNRDRRLHQMMFAARDFERLEYVQDKNSRPHV 240

Query: 238 TILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVD 297
           T+LDCSDRDYT VTIRS+DRPKLLFDTVC LTDMQYVV+HGTV+TGRMEAYQE+YI+HVD
Sbjct: 241 TVLDCSDRDYTVVTIRSRDRPKLLFDTVCALTDMQYVVFHGTVITGRMEAYQEHYIRHVD 300

Query: 298 GFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAE 357
           G P+ SEAERQRV  CLEAAIERRA EGL LEL T+DRFGLLSD+TR+ RE GLCI+RA 
Sbjct: 301 GLPLRSEAERQRVTECLEAAIERRAWEGLVLELSTEDRFGLLSDVTRVFRENGLCIKRAV 360

Query: 358 ISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPARSFF 417
           I+T   K KDTFFVTD SGN VD K V+ I+ QIG+TIL+VKGNLN  PKLPQE  RSF 
Sbjct: 361 ITTKCGKAKDTFFVTDVSGNTVDSKTVEMIRQQIGQTILRVKGNLNFSPKLPQEGTRSFP 420

Query: 418 FTNFFKGRSFQSFKLIKSCS 437
           F N FKGRSFQ+FKLIKS S
Sbjct: 421 FGNLFKGRSFQTFKLIKSYS 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858899|emb|CAN80840.1| hypothetical protein VITISV_043834 [Vitis vinifera]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/440 (72%), Positives = 367/440 (83%), Gaps = 3/440 (0%)

Query: 1   MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
           MDDE+AKLIRRMNPPRVVIDND C HATVI+VDS NRHGILL+V+Q L DLNL+ITKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDSCGHATVIEVDSANRHGILLQVVQVLTDLNLIITKAYI 60

Query: 61  SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIE 120
           SSDGG+ MDVF VTD +G K+ D+  ++Y++ T+ET A FLNS+R SVGV+PSKE TSIE
Sbjct: 61  SSDGGWFMDVFNVTDHDGNKLRDEEILNYLQKTLETEAGFLNSLRGSVGVMPSKEDTSIE 120

Query: 121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
           LTG+DRPGLLSEVSAVLTDL C+VV+AEIWTHN RAAA++HV DQ++GCAIED KRL  I
Sbjct: 121 LTGSDRPGLLSEVSAVLTDLRCNVVNAEIWTHNXRAAAVIHVTDQATGCAIEDPKRLSMI 180

Query: 181 KKLLCNVLRTNGDLRTPSMSISSAR--VLHGERRLHQMLFADRDFERLD-CVNYNSRPHV 237
           KK L NV + N   RTP M+ISS     ++ +RRLHQM+FA RDFERL+   + NSRPHV
Sbjct: 181 KKRLGNVFKGNSSFRTPKMTISSPGPVAMNRDRRLHQMMFAARDFERLEYAQDTNSRPHV 240

Query: 238 TILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVD 297
           T+LDCSDRDYT VTIRS+DRPKLLFDTVC LTDMQYVV+HGTV+TGRMEAYQE+YI+HVD
Sbjct: 241 TVLDCSDRDYTVVTIRSRDRPKLLFDTVCALTDMQYVVFHGTVITGRMEAYQEHYIRHVD 300

Query: 298 GFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAE 357
           G P+ SEAERQRV  CLEAAIERRA EGL LEL T+DRFGLLSD+TR+ RE GLCI+RA 
Sbjct: 301 GLPLRSEAERQRVTECLEAAIERRAWEGLVLELSTEDRFGLLSDVTRVFRENGLCIKRAV 360

Query: 358 ISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPARSFF 417
           I+T   K KDTFFVTD SGN VD K V+ I+ QIG+TIL+VKGNLN  PKLP E  RSF 
Sbjct: 361 ITTKCGKAKDTFFVTDVSGNXVDSKTVEMIRQQIGQTILRVKGNLNFSPKLPXEGTRSFX 420

Query: 418 FTNFFKGRSFQSFKLIKSCS 437
           F N FKGRSFQ+FKLIKS S
Sbjct: 421 FGNLFKGRSFQTFKLIKSYS 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451503|ref|XP_002272024.1| PREDICTED: uncharacterized protein LOC100248040 [Vitis vinifera] gi|296082319|emb|CBI21324.3| unnamed protein product [Vitis vinifera]

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/441 (69%), Positives = 366/441 (82%), Gaps = 5/441 (1%)

Query: 1   MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
           MDDE+AKLIRRMNPPRVVIDND  E ATVIQVDSVN+HGILLEV+Q L D+NLVITKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDASEEATVIQVDSVNKHGILLEVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIE 120
           SSDGG+ MDVF V D +G KI D+  I+YI  T+E +ASF+  MR +VGV+PS+++TSIE
Sbjct: 61  SSDGGWFMDVFNVVDGDGNKIRDKGVINYITKTLERDASFVPPMRGTVGVMPSEDHTSIE 120

Query: 121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
           L+GTDRPGLLSEV AVL DL C+VV+AEIWTHNARAAA++HV D S+GCAIED  RL KI
Sbjct: 121 LSGTDRPGLLSEVCAVLADLHCNVVNAEIWTHNARAAAVVHVTDDSTGCAIEDPNRLSKI 180

Query: 181 KKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCV----NYNSRPH 236
           K+LLCNVL+ N DL+T  M++S     H ERRLHQ++FADRD++R++      + +SRPH
Sbjct: 181 KELLCNVLKGNNDLKTAKMTLSPPGFTHRERRLHQIMFADRDYQRVERAELGKDKSSRPH 240

Query: 237 VTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHV 296
           VT+LDC ++DYT +T+RSKDRPKLLFDTVC LTDMQYVV+HG V TGRMEAYQEYYI+HV
Sbjct: 241 VTVLDCIEKDYTVITMRSKDRPKLLFDTVCTLTDMQYVVFHGVVHTGRMEAYQEYYIRHV 300

Query: 297 DGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRA 356
           DG P+SS+AER+RV+ CLEAAIERRASEGLELEL T+DRFGLLSDITR+ RE  LCI+RA
Sbjct: 301 DGLPMSSDAERERVIECLEAAIERRASEGLELELRTEDRFGLLSDITRVFRENSLCIKRA 360

Query: 357 EISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPARSF 416
           EIST G K KDTF+VTD +GNPV+P+I+DSI+ QIG +ILQVK N N  PK PQE   SF
Sbjct: 361 EISTEGGKAKDTFYVTDVTGNPVNPQIIDSIRQQIGHSILQVK-NSNLSPKAPQETTMSF 419

Query: 417 FFTNFFKGRSFQSFKLIKSCS 437
            F N FK R+ Q+FKLI+S S
Sbjct: 420 LFGNIFKCRTLQNFKLIRSYS 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503685|ref|XP_003622131.1| Amino acid binding protein, putative [Medicago truncatula] gi|355497146|gb|AES78349.1| Amino acid binding protein, putative [Medicago truncatula]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 295/442 (66%), Positives = 350/442 (79%), Gaps = 5/442 (1%)

Query: 1   MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
           MDDE+AKLIRRMNPPRVVIDN+ CE+ATVIQVDSVN+HGILL+V+Q + D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVIKKAYI 60

Query: 61  SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIE 120
           SSDG + MDVF VTD NG KI D+  I YI+  +E N SF  SMR SVGVVP++E+T IE
Sbjct: 61  SSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRRLEKNPSFETSMRESVGVVPTEEHTVIE 120

Query: 121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
           LTGTDRPGLLSE+ AVL DL C+VV+AEIWTHN RAAA++HV D SSGCAIED  RL  I
Sbjct: 121 LTGTDRPGLLSEICAVLADLRCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTI 180

Query: 181 KKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSR-----P 235
           + LLCNVLR + D +T   ++S   V + +RRLHQ++FADRD+ER++      R     P
Sbjct: 181 RDLLCNVLRGSDDPKTAKTALSHPGVTYRDRRLHQIMFADRDYERVERAGLRERDKGPFP 240

Query: 236 HVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKH 295
           HVT+ DC++RDYT V +R+KDRPKLLFD VC LTDMQYVV+HG V T R  AYQE+YI+H
Sbjct: 241 HVTVSDCTERDYTVVIMRAKDRPKLLFDIVCTLTDMQYVVFHGVVQTERTGAYQEFYIRH 300

Query: 296 VDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRR 355
           VDGFPISSEAER+R++ CLEAAIERRASEG+ELEL T+DR GLLSDITRI RE  LCI+R
Sbjct: 301 VDGFPISSEAERERLIQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKR 360

Query: 356 AEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPARS 415
           AEIST   K KDTF+VTD +GNPVDPK +DSI+ QIG T+LQVK N +  PK PQ     
Sbjct: 361 AEISTENGKAKDTFYVTDVTGNPVDPKSIDSIRRQIGDTVLQVKHNSSLSPKPPQGTTIG 420

Query: 416 FFFTNFFKGRSFQSFKLIKSCS 437
           F F +FFK RSFQ+FKLI+S S
Sbjct: 421 FLFGSFFKARSFQNFKLIRSYS 442

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543679|ref|XP_002512902.1| amino acid binding protein, putative [Ricinus communis] gi|223547913|gb|EEF49405.1| amino acid binding protein, putative [Ricinus communis]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 295/444 (66%), Positives = 355/444 (79%), Gaps = 8/444 (1%)

Query: 1   MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
           MDDE+AKLIRRMNPPRVVIDNDVCE ATVIQVDSVN+HGILL+V+Q L D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDVCEDATVIQVDSVNKHGILLQVVQVLTDMNLVIKKAYI 60

Query: 61  SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIE 120
           SSDGG+ MDVF V D +G KI D+  I YI+  +E+NASF  S+R SVGV+PS+++TSIE
Sbjct: 61  SSDGGWFMDVFNVIDQDGNKIRDKEVIGYIQRRLESNASFAPSLRGSVGVMPSEDHTSIE 120

Query: 121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
           L+G DRPGLLSEV AVL DL C+VV+AEIWTHNARAAA++HV D S+GCA++D KRL  I
Sbjct: 121 LSGNDRPGLLSEVCAVLADLRCNVVNAEIWTHNARAAAVVHVTDDSTGCAVKDPKRLSTI 180

Query: 181 KKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCV------NYNSR 234
           K+LLCNVL+ N DL+   M++S   +   ERRLHQ++FADRD+ER+D V      + +SR
Sbjct: 181 KELLCNVLKGNNDLKAAKMTLSPPGITSRERRLHQIMFADRDYERVDRVGLGRLEDKSSR 240

Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRM-EAYQEYYI 293
           PHVT+L+  ++DY+ +T+RSKDRPKLLFD VC LTDM+YVV+HG V  GR  EAYQE+YI
Sbjct: 241 PHVTVLNI-EKDYSVITMRSKDRPKLLFDIVCTLTDMEYVVFHGMVNAGRKEEAYQEFYI 299

Query: 294 KHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCI 353
           +HVDG PISS+AER+RV+ CLEAAIERRASEGLELEL T+DR GLLSDITR  RE  LCI
Sbjct: 300 RHVDGLPISSDAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRTFRENSLCI 359

Query: 354 RRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPA 413
           +RAEIST G   KDTF+VTD +G+PVDPKIVDSI  QIG+T LQVK NL   PK  QE  
Sbjct: 360 KRAEISTKGGIAKDTFYVTDVTGSPVDPKIVDSICRQIGQTRLQVKQNLTLSPKPAQETT 419

Query: 414 RSFFFTNFFKGRSFQSFKLIKSCS 437
             +     FK R+FQ+FKLI+S S
Sbjct: 420 MGYLLGTLFKARTFQNFKLIRSYS 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540149|ref|XP_002511139.1| amino acid binding protein, putative [Ricinus communis] gi|223550254|gb|EEF51741.1| amino acid binding protein, putative [Ricinus communis]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 294/447 (65%), Positives = 346/447 (77%), Gaps = 12/447 (2%)

Query: 3   DEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS 62
           DE+AKLIRRMN PRVVIDND CEHAT++QVD++NR+G LL+V+Q L DLNL+ITKAYISS
Sbjct: 6   DEYAKLIRRMNSPRVVIDNDACEHATIVQVDTLNRYGTLLQVVQVLTDLNLIITKAYISS 65

Query: 63  DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELT 122
           DG + MDVFYVT  +G K+ D++ ++YIK  +E +   +NS+RSS+ ++PSKE+TSIEL+
Sbjct: 66  DGVWFMDVFYVTGNDGNKVEDESILNYIKKALERDGHVVNSIRSSIAMLPSKEHTSIELS 125

Query: 123 GTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKK 182
           GTDRPGLLSEVSAVLTDL CSVV+AEIWTHN R AA++H+ +QS+GCA+E+ KRL  IK+
Sbjct: 126 GTDRPGLLSEVSAVLTDLGCSVVNAEIWTHNFRVAAIMHITEQSTGCAVEEPKRLSLIKE 185

Query: 183 LLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNS-RPHVTILD 241
           LL NVL+ N   R+P +SISS    H  RRLHQM+FA RDFERL+        P V + D
Sbjct: 186 LLRNVLKGNSTFRSPKVSISSPEETHIGRRLHQMMFAARDFERLESAKEKGVEPCVIVSD 245

Query: 242 CSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPI 301
           C+D+DYT VT+R  DRPKLLFDTV  LTDMQYVV+HGTV+TG  EAYQEYYI+HVDG PI
Sbjct: 246 CADKDYTVVTVRCIDRPKLLFDTVFALTDMQYVVFHGTVITGGKEAYQEYYIRHVDGLPI 305

Query: 302 SSEAERQRVMACLEAAIERRASE-----------GLELELYTDDRFGLLSDITRILREYG 350
           SSEAERQRV  CLEAAIERRASE           GLELEL TDDRFGLLSDITRI RE G
Sbjct: 306 SSEAERQRVTECLEAAIERRASERYTHRNVTLSQGLELELCTDDRFGLLSDITRIFRENG 365

Query: 351 LCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQ 410
           L I+RAEIST   K KDTFFVTD +GN VDP  V  I+ QIG+TIL  KG LN   K PQ
Sbjct: 366 LSIQRAEISTKNGKAKDTFFVTDVAGNSVDPTTVRMIREQIGQTILHAKGKLNVLSKFPQ 425

Query: 411 EPARSFFFTNFFKGRSFQSFKLIKSCS 437
           E  RSF F +FFKGRSF  F L+KS S
Sbjct: 426 ETPRSFLFGSFFKGRSFHHFGLVKSYS 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143611|ref|XP_002336061.1| predicted protein [Populus trichocarpa] gi|222869846|gb|EEF06977.1| predicted protein [Populus trichocarpa]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 294/443 (66%), Positives = 356/443 (80%), Gaps = 10/443 (2%)

Query: 1   MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
           MD+E+AKLIRR+NPPRVVIDND CE ATVIQVDSVN+HGILL+V+Q L D+NLVITKAYI
Sbjct: 1   MDEEYAKLIRRLNPPRVVIDNDACEEATVIQVDSVNKHGILLKVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIE 120
           SSDG + MDVF V D +G+KI D+  + YI+  +E+NASF  S+R SVGV+PS+E+T+IE
Sbjct: 61  SSDGDWFMDVFNVVDQDGKKIRDKEVMDYIQRRLESNASFAPSLRGSVGVMPSEEHTAIE 120

Query: 121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
           LTGTDRPGLLSEV AVLTDL C+VV+AEIWTHN RAAA++HV D S+GCAI+D KRL  I
Sbjct: 121 LTGTDRPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLSTI 180

Query: 181 KKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCV------NYNSR 234
           ++LLCNVL+ N D +T + ++S   V   ERRLHQ++FADRD+ER++        + +SR
Sbjct: 181 RELLCNVLKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKSSR 240

Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
           PHVT+L+  +RDYT V++RSKDRPKLLFD VC LTDM+YVV+HG V TGRMEAYQE+YI+
Sbjct: 241 PHVTVLNI-ERDYTVVSMRSKDRPKLLFDIVCTLTDMEYVVFHGMVSTGRMEAYQEFYIR 299

Query: 295 HVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIR 354
           HVDG P+SS+AER+RV+ CLEAAIERRASEGLELEL T+DR GLLSDITRI RE  LCI+
Sbjct: 300 HVDGLPVSSDAERERVVQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLCIK 359

Query: 355 RAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPAR 414
           RAEI T G K KDTF+VTD +GNPVDPKI+DSI  QIG+T L VK N    PK PQE   
Sbjct: 360 RAEILTKGGKAKDTFYVTDVTGNPVDPKIIDSICRQIGQTKLLVKRNSILSPKPPQETTM 419

Query: 415 SFFFTNFFKGRSFQSFKLIKSCS 437
            + F N FK R   +FKLI+S S
Sbjct: 420 GYIFGNLFKAR---TFKLIRSYS 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571573|ref|XP_003553951.1| PREDICTED: uncharacterized protein LOC100801859 [Glycine max]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/445 (65%), Positives = 349/445 (78%), Gaps = 8/445 (1%)

Query: 1   MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
           MDDE+AKLIRRMNPPRVVIDN+ CE+ATVIQVDSVN+HGILL+V+Q + D+NLVITKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYI 60

Query: 61  SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIE 120
           SSDG + MDVF V D  G KI D+  I YI+  +E N SF+ S+R SVGVVP++E+T IE
Sbjct: 61  SSDGVWFMDVFNVIDHKGNKIRDKEVIDYIQRRLENNPSFVPSLRESVGVVPTEEHTVIE 120

Query: 121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
           LTGTDRPGLLSE+ AVLTDL C+VV+AEIWTHN RAAA++HV D SSGCAI+D  RL  I
Sbjct: 121 LTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTI 180

Query: 181 KKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCV--------NYN 232
           + LL NVLR + D +T   ++S   V + +RRLHQ++FADRD+ER++          +  
Sbjct: 181 RDLLSNVLRGSNDPKTARTTLSPHGVTNRDRRLHQIMFADRDYERIERAGQEELRDRDKR 240

Query: 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYY 292
             PHVT+ DC ++DYT VT+R++DRPKLLFD VC LTDMQYVV+HG V T RMEA+QE+Y
Sbjct: 241 PLPHVTVGDCVEKDYTVVTMRAQDRPKLLFDIVCTLTDMQYVVFHGVVKTLRMEAFQEFY 300

Query: 293 IKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLC 352
           I+HVDGFPISSEAER+R+M CLEAAIERRASEG+ LEL T+DR GLLSDITR  RE  LC
Sbjct: 301 IRHVDGFPISSEAERERLMQCLEAAIERRASEGMGLELCTEDRVGLLSDITRTFRENSLC 360

Query: 353 IRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEP 412
           I+RAEIST   K +DTF+VTD +GNPVDPKI+DSI+ QIG  +L+VK N N  PK PQ  
Sbjct: 361 IKRAEISTEEGKARDTFYVTDVTGNPVDPKIIDSIRRQIGDKVLKVKHNSNLSPKPPQPT 420

Query: 413 ARSFFFTNFFKGRSFQSFKLIKSCS 437
              F   NFFK RSFQ+FKLIKS S
Sbjct: 421 TIGFLLGNFFKARSFQNFKLIKSYS 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055763|ref|XP_002298641.1| predicted protein [Populus trichocarpa] gi|222845899|gb|EEE83446.1| predicted protein [Populus trichocarpa]

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/445 (66%), Positives = 356/445 (80%), Gaps = 12/445 (2%)

Query: 1   MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
           MD+E+AKLIRR+NPPRVVIDND CE ATVIQVDSVN+HGILL+V+Q L D+NLVITKAYI
Sbjct: 1   MDEEYAKLIRRLNPPRVVIDNDACEEATVIQVDSVNKHGILLKVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGYLMDVFYVTDINGQKIGDQATISYIKTT--VETNASFLNSMRSSVGVVPSKEYTS 118
           SSDG + MDVF V D +G+KI D+  + YI+    +E+NASF  S+R SVGV+PS+E+T+
Sbjct: 61  SSDGDWFMDVFNVVDQDGKKIRDKEVMDYIQRVRRLESNASFAPSLRGSVGVMPSEEHTA 120

Query: 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLL 178
           IELTGTDRPGLLSEV AVLTDL C+VV+AEIWTHN RAAA++HV D S+GCAI+D KRL 
Sbjct: 121 IELTGTDRPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLS 180

Query: 179 KIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCV------NYN 232
            I++LLCNVL+ N D +T + ++S   V   ERRLHQ++FADRD+ER++        + +
Sbjct: 181 TIRELLCNVLKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKS 240

Query: 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYY 292
           SRPHVT+L+  +RDYT V++RSKDRPKLLFD VC LTDM+YVV+HG V TGRMEAYQE+Y
Sbjct: 241 SRPHVTVLNI-ERDYTVVSMRSKDRPKLLFDIVCTLTDMEYVVFHGMVSTGRMEAYQEFY 299

Query: 293 IKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLC 352
           I+HVDG P+SS+AER+RV+ CLEAAIERRASEGLELEL T+DR GLLSDITRI RE  LC
Sbjct: 300 IRHVDGLPVSSDAERERVVQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLC 359

Query: 353 IRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEP 412
           I+RAEI T G K KDTF+VTD +GNPVDPKI+DSI  QIG+T L VK N    PK PQE 
Sbjct: 360 IKRAEILTKGGKAKDTFYVTDVTGNPVDPKIIDSICRQIGQTKLLVKRNSILSPKPPQET 419

Query: 413 ARSFFFTNFFKGRSFQSFKLIKSCS 437
              + F N FK R   +FKLI+S S
Sbjct: 420 TMGYIFGNLFKAR---TFKLIRSYS 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561659|ref|XP_003549097.1| PREDICTED: uncharacterized protein LOC100818506 [Glycine max]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/445 (64%), Positives = 349/445 (78%), Gaps = 8/445 (1%)

Query: 1   MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
           MDDE+AKLIRRMNPPRVVIDN+ CE+ATVIQVDSVN+HGILL+V+Q + D+NLVITKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYI 60

Query: 61  SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIE 120
           SSD  + MDVF V D NG KI D+  I YI+  +E N SF  S+R SVGVVP++E+T IE
Sbjct: 61  SSDAVWFMDVFNVIDHNGNKIRDKEVIDYIQRRLENNPSFAPSLRESVGVVPTEEHTVIE 120

Query: 121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
           LTGTDRPGLLSE+ AVLTDL C+VV+AEIWTHN RAAA++HV D SSGCAI+D  RL  I
Sbjct: 121 LTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTI 180

Query: 181 KKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCV--------NYN 232
           + LL NVLR + D +T   ++S   V + +RRLHQ++FADRD+ER++          +  
Sbjct: 181 RDLLSNVLRGSNDPKTARTTLSPPGVTNRDRRLHQIMFADRDYERIERAGRGGLRDRDKR 240

Query: 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYY 292
             PHVT++DC ++DYT VT+R++DRPKLLFD VC LTDMQYVV+HG V T R EA+QE+Y
Sbjct: 241 PLPHVTVVDCVEKDYTVVTMRAQDRPKLLFDIVCTLTDMQYVVFHGVVKTLRTEAFQEFY 300

Query: 293 IKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLC 352
           I+HVDGFPISSEAER+R++ CLEAAIERRASEG+ELEL T+DR GLLSDITRI RE  LC
Sbjct: 301 IRHVDGFPISSEAERERLVQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLC 360

Query: 353 IRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEP 412
           I+RAEIST   K +DTF+VTD +GNPVDPKI+DSI+ QIG  +L+VK N N  PK  Q  
Sbjct: 361 IKRAEISTEEGKARDTFYVTDVTGNPVDPKIIDSIRRQIGDKVLKVKHNSNLSPKPSQPT 420

Query: 413 ARSFFFTNFFKGRSFQSFKLIKSCS 437
              F   NFFK RSFQ+FKLI+S S
Sbjct: 421 TIGFLLGNFFKARSFQNFKLIRSYS 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.906	0.914	0.65	1.7e-130
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.995	0.956	0.570	3.3e-127
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.988	0.947	0.561	2.5e-120
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.974	0.965	0.474	2.2e-98
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.897	0.865	0.481	2e-97
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.885	0.861	0.488	1.3e-93
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.434	0.38	0.441	1.5e-87
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.535	0.490	0.404	1.3e-84
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.775	0.824	0.247	4.7e-10
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.189	0.275	0.321	1.1e-08

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 260/400 (65%), Positives = 314/400 (78%)

Query:     2 DDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS 61
             DDE+AKLIRRMNPPRVVIDN+  + ATVIQVDSVN+HG LLEV+Q L D+NLVI KAYIS
Sbjct:     3 DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query:    62 SDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNAS-FLNSMRSSVGVVPSKEYTSIE 120
             SDGG+ MDVF V D +G KI D   + YI+  +E+NA  F+  +RSSVGV+P+ EYTSIE
Sbjct:    63 SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIE 122

Query:   121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
             L GTDRPGLLSEVSAVLTDL C+VV+AEIWTHN RAAA++HV D S+  AI D  RL  I
Sbjct:   123 LAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTI 182

Query:   181 KKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYN-SRPHVTI 239
             K+LLCNV+RTN   R  + ++ S    H ERRLHQ++F DRD+E +     + SRP VT+
Sbjct:   183 KELLCNVVRTNSGSRA-AKTVFSCSDTHRERRLHQIMFDDRDYEGVKRARTSASRPSVTL 241

Query:   240 LDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGF 299
             ++  ++DYT VT+RSKDRPKL+FD VC LTDMQYVV+HG V T  +EAYQE+YI+HVDG 
Sbjct:   242 MNI-EKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHVDGL 300

Query:   300 PISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEIS 359
             PI+SEAE++RV+ CLEAAIERRASEGLELEL  +DR GLLSDITR  RE  L I RAEIS
Sbjct:   301 PINSEAEQERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITRTFRENSLTIVRAEIS 360

Query:   360 TMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK 399
             T   K KDTF+VTD +GNPV+ KIV+SI+ QIG + L+VK
Sbjct:   361 TREGKAKDTFYVTDVTGNPVESKIVESIRQQIGVSKLKVK 400

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 255/447 (57%), Positives = 321/447 (71%)

Query:     1 MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
             MD+E+ KLIRRMNPPRVVIDND C+ ATVI+VDS N +GILLEV+Q L DLNL ITKAYI
Sbjct:    11 MDNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYI 70

Query:    61 SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIE 120
             SSDGG+ MDVF VTD +G K+ D+  + YI+ ++   A F  SMRS VGV+PS + T IE
Sbjct:    71 SSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRS-VGVIPSTDSTVIE 129

Query:   121 LTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKI 180
             LTG DRPGLLSE+SAVLT L CSV++AEIWTHN RAAA++ V D  +GC I D +RL +I
Sbjct:   130 LTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERLSRI 189

Query:   181 KKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFE-RL-----DCVNYNSR 234
             K LL NVL+ +   R     +S   V H +RRLHQM+F DRD+E RL        +   R
Sbjct:   190 KNLLRNVLKGSNTPREAKTVVSHGEV-HTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQR 248

Query:   235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
             P V + +  D+DY+ VT+R KDRPKLLFDTVC LTDMQYVV+HG+V T   EA+QEYY++
Sbjct:   249 PDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAFQEYYVR 308

Query:   295 HVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIR 354
             H+DG P+ SEAE+QRV+ CLEAAI+RR SEGL+LEL T DR GLLS++TRI RE  L + 
Sbjct:   309 HIDGSPVKSEAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVT 368

Query:   355 RAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKLPQEPAR 414
             RAE+ T G K  +TF+V+DASG  +D K +DSI+  IG+TIL+VK N     +  + P+ 
Sbjct:   369 RAEVKTKGGKALNTFYVSDASGYSIDAKTIDSIRQTIGQTILKVKNNPQEQQQRQKSPSH 428

Query:   415 S----FFFTNFFKGRSFQSFKLIKSCS 437
                  F F   FK +SF +F L++S S
Sbjct:   429 ESPTRFLFGGLFKSKSFVNFGLVRSYS 455

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
 Identities = 252/449 (56%), Positives = 318/449 (70%)

Query:     1 MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
             MDDE AK IRR+NPPRVVIDN+VC+  TVI+VDS N+HGILLEV+Q L +LNL I KAYI
Sbjct:    11 MDDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYI 70

Query:    61 SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTV--ETNASFLNSMRSSVGVVPSKEYTS 118
             SSDGG+ MDVF VTD +G K+ D+  + YI+ ++  + ++ F  SMRS++GV  S +YT 
Sbjct:    71 SSDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPDESSCFSPSMRSTIGVKQSVDYTV 130

Query:   119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLL 178
             +ELTGTDRPGLLSE+ AVL DL C+VV+AEIWTH A+AAA+L V D+ +  AI D +RL 
Sbjct:   131 VELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLS 190

Query:   179 KIKKLLCNVLRTNGD----LRTPSMSISSA-RVLHGERRLHQMLFADRDFER----LDCV 229
             KI+KLL  VL T G      R P  ++SSA    H +R+LHQ++FADRD++     +D  
Sbjct:   191 KIRKLLGYVL-TGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDDE 249

Query:   230 NYNSR--PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEA 287
             +   R  P V + +  D DY+ V I+ KDRPKLLFDTV  LTDM YVV H ++     +A
Sbjct:   250 DKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQA 309

Query:   288 YQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILR 347
             YQEYYI+H DG P+ SEAERQRV+ CL+AAI+RR SEGL+LEL T DR GLLSD+TRI R
Sbjct:   310 YQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRRVSEGLKLELCTSDRVGLLSDVTRIFR 369

Query:   348 EYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPK 407
             E  L + RAE+ T G K  +TF+V DASG  VD K ++SI+  IG+TILQVKG  NT  K
Sbjct:   370 ENSLTVTRAEVKTKGDKALNTFYVRDASGYQVDTKTIESIRQVIGQTILQVKGG-NTDAK 428

Query:   408 -LPQEPARSFFFTNFFKGRSFQSFKLIKS 435
               PQ+    F F   FK RSF +F LI+S
Sbjct:   429 PSPQDSPTGFLF-GVFKSRSFVNFGLIRS 456

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 210/443 (47%), Positives = 297/443 (67%)

Query:     3 DEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS 62
             DE+ KL+ RMN PRVVIDN VC  AT+++VDS  R+GILLE +Q L DLNL I KAYISS
Sbjct:     8 DEYEKLVIRMNTPRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISS 67

Query:    63 DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELT 122
             DG + MDVF+VTD+NG K+ DQ+ + YI+ ++ET   +  ++  + G+      T++ELT
Sbjct:    68 DGTWNMDVFHVTDLNGNKLNDQSVLRYIEQSIET-VYYGENIEVN-GL------TALELT 119

Query:   123 GTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKK 182
             GTDR GLLSE+ AVL+DL+C VV A++WTHN R A+++++KD  SG  I D  R+ KI+ 
Sbjct:   120 GTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEG 179

Query:   183 LLCNVLRTNGDLRTPSMS-ISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHV--TI 239
              L NVL  + D+ + + + ++   ++H ERRLHQ++F DRD+ER    +  S P V  T+
Sbjct:   180 RLKNVLNGDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYERRSKKHERS-PMVVVTV 238

Query:   240 LDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGF 299
              + ++R Y+ V +  +DR KLLFD VC LTDM+Y V+H T+ T   +A+ E+YI+H DG 
Sbjct:   239 QNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHLEFYIRHKDGS 298

Query:   300 PISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEIS 359
             PISSEAERQRV+ CLEAA+ERRA EG+ LEL   D+ GLL+++TR  RE GL + R EIS
Sbjct:   299 PISSEAERQRVIQCLEAAVERRALEGVRLELRHPDKQGLLAEVTRTFRENGLNVTRTEIS 358

Query:   360 TMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPPKL----PQEPARS 415
             T      + F+VTDA+G+  D K+++S++ +IG   L+VK       K      Q+  ++
Sbjct:   359 TSSDMATNIFYVTDANGDEPDFKLIESVREKIGLECLRVKEMPTMYHKKGDGEEQQQTKA 418

Query:   416 FFFT-NFFKGRSFQSFKLIKSCS 437
                +      R+  +F LIKSCS
Sbjct:   419 VLVSLGSLVWRNLFNFGLIKSCS 441

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 196/407 (48%), Positives = 273/407 (67%)

Query:     2 DDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS 61
             D E+  L  R+NPP V IDN  C+  T+++VDS+N+ GILLEV+Q L DL+L ITKAYIS
Sbjct:    10 DPEYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYIS 69

Query:    62 SDGGYLMDVFYVTDINGQKIGDQATISYIKTTV----ETNASFLNSMRSSVGVVPSKEYT 117
             SDGG+ MDVF+VTD  G K+ D  TI YI+  +      +AS        VGV    ++T
Sbjct:    70 SDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHT 129

Query:   118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRL 177
             SIE+   DRPGLLSEVSAVL DL+ +VV+AE WTHN R A +L+V D ++  A++D +RL
Sbjct:   130 SIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATSRAVDDPERL 189

Query:   178 LKIKKLLCNVLR----TNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERL----DCV 229
               +++ L NVLR     +      S+SI S    H +RRLHQM FADRD+E +    D  
Sbjct:   190 SSMEEQLNNVLRGCEEQDEKFARTSLSIGST---HVDRRLHQMFFADRDYEAVTKLDDSA 246

Query:   230 NYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQ 289
             +    P +T+  C ++ Y+ + +  +DRPKL+FD VC LTDMQY+V+H T+ +    A Q
Sbjct:   247 SCGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQ 306

Query:   290 EYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREY 349
             EY+I+H DG  + +E E++RV+ CLEAAI RR SEG  LEL   DR GLLS++TRILRE+
Sbjct:   307 EYFIRHKDGCTLDTEGEKERVVKCLEAAIHRRVSEGWSLELCAKDRVGLLSEVTRILREH 366

Query:   350 GLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTIL 396
             GL + RA ++T+G +  + F+V DASGNPVD K +++++ +IG +++
Sbjct:   367 GLSVSRAGVTTVGEQAVNVFYVKDASGNPVDVKTIEALRGEIGHSMM 413

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 195/399 (48%), Positives = 270/399 (67%)

Query:     3 DEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS 62
             +E+ KL+ RMN PRVVIDN VC ++TV+++DS    GILLE +Q L D+NL I KAYISS
Sbjct:     8 NEYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISS 67

Query:    63 DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELT 122
             DG + MDVF+V+D+NG K+ D+  I YI+ ++ET  S         G+      T++ELT
Sbjct:    68 DGKWNMDVFHVSDLNGDKLTDENLIRYIEKSIET--SHYCKTEGYTGL------TALELT 119

Query:   123 GTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE-DQKRLLKIK 181
             GTDR GLLSEV AVL DL C VV A+ WTHN R A++++VKD +SG  I+ D  R+ +++
Sbjct:   120 GTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQRVE 179

Query:   182 KLLCNVLRTNGDLRTPSMS-ISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTIL 240
               L N+L+ +   +  + + +S     H ERRLHQ +F DRD+E+    +    P V++ 
Sbjct:   180 GQLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEKK--FDIEKSPIVSVQ 237

Query:   241 DCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFP 300
             +   R Y+ V ++ KDR KLLFD VC LTDM Y+V+H  + T    A+ E+Y++H DG P
Sbjct:   238 NLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVRHSDGHP 297

Query:   301 ISSEAERQRVMACLEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEIST 360
             +SSE ERQR++ CL+AAIERR  +G+ LEL T DR GLL+++TRILRE GL I RAEIST
Sbjct:   298 VSSEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIARAEIST 357

Query:   361 MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK 399
                  ++ F+VTDA+GN +DP+I+ SI+ +IG   L VK
Sbjct:   358 KDSIARNVFYVTDANGNLIDPEIIKSIREKIGIDDLSVK 396

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
 Identities = 91/206 (44%), Positives = 142/206 (68%)

Query:   210 ERRLHQMLFADRDFE--------------RLDCVNYNSRPH--VTILDCSDRDYTAVTIR 253
             ERRLHQ++ + RDF+              +L+  ++  R    V+I +C +R Y+ VT++
Sbjct:   243 ERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHKERKTTIVSIGNCEERGYSIVTVK 302

Query:   254 SKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMAC 313
             SKDR +L+FDT+C L DMQYV++H  + +   +A+QEY+I+H+DG  +++E E++RV+ C
Sbjct:   303 SKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKERVIKC 362

Query:   314 LEAAIERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTD 373
             LEAAIERR  EG++LEL  ++R GLLSDITR+LRE GL + RA++ T G+K  + F+V D
Sbjct:   363 LEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAFYVRD 422

Query:   374 ASGNPVDPKIVDSIQHQIGRTILQVK 399
              SGN +D + V+S++ ++    L+VK
Sbjct:   423 ISGNKIDMEFVESVKKEMRPIHLEVK 448

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
 Identities = 101/250 (40%), Positives = 155/250 (62%)

Query:     1 MDDEFAKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI 60
             +D E   L+ R+NPPRV +DND     T+I+VDS N++GILL+++Q L DL+LVI+K YI
Sbjct:    10 IDSEIESLVERINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYI 69

Query:    61 SSDGGYLMDVFYVTDINGQKIGDQATISYIKTTV--ETNASFLNSMRSSVG-VVP----S 113
             SSDG + MDVF+VTD  G K+ D++ I YI+  +           M+S++   V     S
Sbjct:    70 SSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGGITKEMQSNLKREVQQRHVS 129

Query:   114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIED 173
              E+T+ E+TG +RPGLLSE+SAVL+D+ C V +A  WTH+ RAA +++++D  +G  I D
Sbjct:   130 TEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDGFNGGPIID 189

Query:   174 QKRLLKIKKLLCNVLRTN---GDLRTPSMSISSARVL-----HGERRLHQMLFADRDFER 225
               R  ++K  L  V+  +   GD+    + +  A+ +     H ERRLH++++ + D+E 
Sbjct:   190 PIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELMYGEGDYEN 249

Query:   226 -LDCVNYNSR 234
               DC  +  R
Sbjct:   250 CFDCDCFGDR 259

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 92/371 (24%), Positives = 161/371 (43%)

Query:    12 MNPPRVVID-NDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDV 70
             +N   V+I+   +    TV+ V+  +  G+   + + +++  L IT+A  S+DG +   V
Sbjct:     4 LNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWCYIV 63

Query:    71 FYVT-DINGQKIG-DQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPG 128
             F+VT DI+  KI  D      +        SF   ++S+V   PS  Y  ++    DR G
Sbjct:    64 FWVTPDISSPKIDWDSLKNRLLSACPSCLGSFYFCLQSNVSKPPSL-YL-LKFFCRDRKG 121

Query:   129 LLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV 187
             LL +V+ VLT+L  ++   ++ T  + R   +  + D      +  ++R  K    L  V
Sbjct:   122 LLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMD--LLHTKQRQTKTCDHLTAV 179

Query:   188 LRTNGDLRTPSMSISSARVLHGERRLHQM--LFADRDF--ERLDCVNYNSRPHVTILDCS 243
             L  +G   +  + ++    L   +R   +  L AD  F  +  D    +S   V  +D  
Sbjct:   180 LGEHGV--SCELELAGPE-LESVQRFSSLPPLAADELFGPDGFDISGSSSNKAVLTVDNQ 236

Query:   244 -DRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQ--EYYIKHVDGFP 300
                 +T + IR  D+  L +D +    D    + +G   + +++ Y+  E +++  DG  
Sbjct:   237 LSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRF-SSKVKGYRNLELFVRGTDGNK 295

Query:   301 ISSE-------AERQRVMAC-LEAAIERRA--SEGL---ELELYTDDRFGLLSDITRILR 347
             I          A  +  M C L   I  R   +E L    +EL    R  +  D+T  L+
Sbjct:   296 IMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTLALK 355

Query:   348 EYGLCIRRAEI 358
               G+CI  AEI
Sbjct:   356 SLGICIFSAEI 366

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query:    15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
             P V+ID D    AT++Q+   NR G L++ ++ L DL L + K  +S++G      F +T
Sbjct:    95 PMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154

Query:    75 DIN-GQKIGDQATISYIKTTVETN 97
               + G+K+ D   +  I+ T+  N
Sbjct:   155 KRDTGRKVEDPDLLEQIRLTIINN 178

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	1e-33
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	1e-31
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	7e-28
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	2e-27
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	4e-20
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-17
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-17
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	5e-14
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-13
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	4e-13
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	6e-12
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-11
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	9e-11
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-10
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-10
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-10
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-10
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	4e-09
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-08
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	2e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-08
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-07
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	5e-07
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	5e-07
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	6e-07
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	7e-07
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	2e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-06
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	7e-06
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	7e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-05
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	2e-05
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	1e-04
pfam01842	66	pfam01842, ACT, ACT domain	1e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	2e-04
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	3e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	4e-04
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	4e-04
pfam01842	66	pfam01842, ACT, ACT domain	4e-04
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	4e-04
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	7e-04
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	0.001
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.003
pfam01842	66	pfam01842, ACT, ACT domain	0.003
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	0.003
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  120 bits (303), Expect = 1e-33
 Identities = 48/75 (64%), Positives = 60/75 (80%)

Query: 247 YTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAE 306
           Y+ VT++ +DRPKLLFD VC LTDM YVV+H T+ T   +A+QEYYI+H DG  +S+E E
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 307 RQRVMACLEAAIERR 321
           RQRV+ CLEAAIERR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  115 bits (289), Expect = 1e-31
 Identities = 44/74 (59%), Positives = 54/74 (72%)

Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
           T+IELTGTDRPGLLSEV AVL DL C+VV A  WTHN R A +++V+D+ +G  I+D  R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 177 LLKIKKLLCNVLRT 190
           L  I+  L NVLR 
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  104 bits (262), Expect = 7e-28
 Identities = 39/72 (54%), Positives = 54/72 (75%)

Query: 27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQAT 86
           T+++VDS  + GILLE +Q L DL+L ITKAYISSDGG+ MDVF+VTD  G K+ D + 
Sbjct: 1  CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 87 ISYIKTTVETNA 98
          I+YI+ ++ T+ 
Sbjct: 61 IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  103 bits (260), Expect = 2e-27
 Identities = 39/68 (57%), Positives = 53/68 (77%)

Query: 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIV 384
           G+ LEL T+DR GLLSD+TR+ RE GL + RAEIST G    + F+VTDA+GNPVDPK +
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 385 DSIQHQIG 392
           ++++ +IG
Sbjct: 61  EAVRQEIG 68

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 83.3 bits (207), Expect = 4e-20
 Identities = 31/68 (45%), Positives = 48/68 (70%)

Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSI 387
           LEL   DR GLL+D+TR+L E GL I  A+I+T+G + +D F+VTDA G P+DP+  +++
Sbjct: 3   LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEAL 62

Query: 388 QHQIGRTI 395
           +  +G  +
Sbjct: 63  RAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 76.4 bits (189), Expect = 1e-17
 Identities = 29/70 (41%), Positives = 44/70 (62%)

Query: 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVD 385
             +E+Y  DR GLL+DITR+L + GL I  A IST G +  D F+VTD+ G P+DP+ + 
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 386 SIQHQIGRTI 395
            ++  +   +
Sbjct: 61  RLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 76.3 bits (189), Expect = 2e-17
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
           T +ELT  DRPGLL++V+ VL +L  ++ SA+I T   RA  + +V D   G  + D +R
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPL-DPER 58

Query: 177 LLKIKKLLCNVL 188
              ++  L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 66.4 bits (163), Expect = 5e-14
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
           T +E+   DRPGLL++++ VL DL  ++  A I T   RA  + +V D        D +R
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGR--PLDPER 58

Query: 177 LLKIKKLLCNVL 188
           + ++++ L + L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 15  PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SSDGGYLMDVFYV 73
           P  +ID       T + + + ++ G+  +V   L  L+L +  A + ++  G  +D F V
Sbjct: 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVV 715

Query: 74  TDINGQKIGDQATISYIK---TTVETNASFLNSMRSSVGVVP------------------ 112
            D+ G     +     +      V    +      S+                       
Sbjct: 716 QDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTA 775

Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQ 165
           S++ T +E+   DRPGLL+ V   L +L  S+ SA+I T   +A  + +V D 
Sbjct: 776 SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL 828

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 14  PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
           PPRV IDN+     TVI+V+  +R G+L ++ + L DLNL I  A+I++ G   +DVFYV
Sbjct: 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889

Query: 74  TDINGQKIGD---QATI 87
           TD+ G KI +   QA I
Sbjct: 890 TDLFGLKITNEARQAAI 906

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATI 87
          TV++V + +R G+L ++ + L DL L I  A IS+ G   +DVFYVTD +G+ + D   I
Sbjct: 1  TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 88 SYIKTTVET 96
          + ++  +E 
Sbjct: 60 ARLEEALED 68

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 67.6 bits (166), Expect = 6e-12
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 24/168 (14%)

Query: 52  NLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNAS------------ 99
           N+V  + + ++DG   +D F++ D  G+   +   ++ +   +E   S            
Sbjct: 759 NIVDARIFTTTDG-RALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKR 817

Query: 100 FLNSMRSSVGVVP---------SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW 150
                R+    VP         S  +T IE+ G DRPGLL +++  L+DL+ ++ SA I 
Sbjct: 818 TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877

Query: 151 THNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPS 198
           T+  RA  + +V D   G  I ++ R   I++ L   L   G+    +
Sbjct: 878 TYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAAL-AEGEAEARA 923

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 57.2 bits (139), Expect = 9e-11
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAER 307
           T V + + DRP LL D    L D+   ++   + T    A   +Y+   DG P+  E   
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPE-RI 59

Query: 308 QRVMACLEAAI 318
            R+   LE A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 63.6 bits (155), Expect = 9e-11
 Identities = 45/185 (24%), Positives = 63/185 (34%), Gaps = 43/185 (23%)

Query: 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHG----TVVTGRMEAY 288
             P   I        T V I + D+P L       L  M  +  H     T   G   A 
Sbjct: 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGAL-AMLSLSVHDAQVNTTKDGV--AL 710

Query: 289 QEYYIKHVDGFPISSEAERQRVMA-------------CLEAAIERRASEG---------- 325
             + ++ + G P    AER                    +    RRA             
Sbjct: 711 DTFVVQDLFGSPP--AAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPR 768

Query: 326 -----------LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDA 374
                        +E+   DR GLL+ + R L E GL I+ A+I+T G K +D F+VTD 
Sbjct: 769 VTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL 828

Query: 375 SGNPV 379
            G  +
Sbjct: 829 FGLKL 833

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVT---GRMEAYQ 289
            +P V I        T V + + DRP+L       L+     +    + T   G   A  
Sbjct: 670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGY--ALD 727

Query: 290 EYYIKHVDGFPISSEAERQRVMACLEAAIERRAS-------------------------- 323
            + +   DGFP+  +         +EA +  +A                           
Sbjct: 728 TFIVLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTA 787

Query: 324 --EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDP 381
             +   LE+   DR GLL+ +  +  + GL +  A+I+T G +V+D F VTDA G  ++ 
Sbjct: 788 SNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNA 847

Query: 382 KIVDSIQHQIGRTILQVKGN 401
           ++  S+  ++   +L     
Sbjct: 848 ELRQSLLQRLLEALLPNDEG 867

Length = 867

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 37/206 (17%)

Query: 15  PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI--SSDGGYLMDVFY 72
           P V+I        T + V + +R  +   V   L    L I  A I  + DG Y +D F 
Sbjct: 672 PLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG-YALDTFI 730

Query: 73  VTDINGQKI------------------GDQATISYIK-------TTVETNASFLNSMRSS 107
           V + +G  +                  G        +         +    + L +    
Sbjct: 731 VLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTA--- 787

Query: 108 VGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSS 167
                S + T +E+   DRPGLL+ ++ V  DL  S+ SA+I T   R   +  V D   
Sbjct: 788 -----SNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-D 841

Query: 168 GCAIEDQKRLLKIKKLLCNVLRTNGD 193
           G A+  + R   +++LL  +L  +  
Sbjct: 842 GQALNAELRQSLLQRLLEALLPNDEG 867

Length = 867

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV-DPKIVDS 386
           LE+   DR GLL+ I RI  E+ L ++ A+I+T+G +V+D FF+TDA   P+ DP++   
Sbjct: 817 LEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 387 IQHQIGRTILQVKGNLNTPP 406
           +Q  I    L  +   +T P
Sbjct: 877 LQDAICEQ-LDARNEKDTSP 895

Length = 895

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 62.2 bits (152), Expect = 3e-10
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 125 DRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKL 183
           D PGL S ++        ++V A I+T  + RA     ++D + G   ++ +RL ++ K 
Sbjct: 741 DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKA 799

Query: 184 LCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTI-LDC 242
           +                      L GE RL + L A R   +     ++  P VTI  + 
Sbjct: 800 I-------------------EDALSGEVRLPEAL-AKRTKPKKRARAFHVPPRVTIDNEA 839

Query: 243 SDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPIS 302
           S+R +T + +  +DRP LL+D    L+D+   +    + T    A   +Y+  + G  I+
Sbjct: 840 SNR-FTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKIT 898

Query: 303 SEAERQRVMACLEAAIERRASEG 325
           +EA +  +   L AA+    +E 
Sbjct: 899 NEARQAAIRRALLAALAEGEAEA 921

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 30/70 (42%), Positives = 43/70 (61%)

Query: 14  PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
           PPRV I N     AT+++V +++R G+L  V + L +L L I  A I++ G    DVFYV
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 74  TDINGQKIGD 83
           TD+ G K+ D
Sbjct: 826 TDLFGLKLTD 835

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATI 87
          TV+++ +++R G+L +V + L +L L I  A I++ G    DVFYVTD +GQ + D    
Sbjct: 1  TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQ 59

Query: 88 SYIKTTVET 96
            ++  +  
Sbjct: 60 EALRAALGE 68

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 31/175 (17%)

Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
            HV I   +D     VT+ + DR  LL      L   +  V   +V +    A  E+ + 
Sbjct: 588 VHVEIAP-ADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVS 646

Query: 295 HVDGFPISSEAERQRVMACLE------AAIERRASEGLE--------------------- 327
              G P  +   RQ +   L+      A +  R +                         
Sbjct: 647 PRFGSPPDAALLRQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPD 706

Query: 328 ---LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
              LE+   DR GLL+ + R L   G+ +R A ++T+G  V D F+VT A+G P+
Sbjct: 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL 761

Length = 774

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 23/196 (11%)

Query: 125 DRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKL 183
           D+PGL ++V+  L  LS SV  A++ T  +  A     V+D   G     ++   ++ + 
Sbjct: 677 DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF-GSPPAAERVFQELLQG 735

Query: 184 LCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCS 243
           L +VL         ++S   AR     RRL                     P VTIL+ +
Sbjct: 736 LVDVLAGLAK-DPDTISARRAR----RRRLQHFAVP---------------PRVTILNTA 775

Query: 244 DRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISS 303
            R  T + +R+ DRP LL      L ++   +    + T   +A   +Y+  + G  ++ 
Sbjct: 776 SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD 835

Query: 304 EAERQRVMACLEAAIE 319
           E E QR++  L A++ 
Sbjct: 836 E-EEQRLLEVLAASVA 850

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 21/70 (30%), Positives = 41/70 (58%)

Query: 14  PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
           P +V I ND     TV+++ + +R G+L  + +  ++ +L +  A I++ G  + DVF++
Sbjct: 801 PTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860

Query: 74  TDINGQKIGD 83
           TD + Q + D
Sbjct: 861 TDADNQPLSD 870

Length = 895

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 337 GLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV-DPKIVDSIQHQIG 392
           G+L +  ++L +  LCI +A IS+ G    D F VTD  GN + D  ++  I+  +G
Sbjct: 13  GILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 51.8 bits (125), Expect = 5e-07
 Identities = 44/171 (25%), Positives = 61/171 (35%), Gaps = 41/171 (23%)

Query: 243 SDRDYTAVTIRSKDRPKLLFDT--VCCLTDMQYV---VYHGTVVTGRMEAYQEYYIKHVD 297
             R  T VT+ + D P L       C       V   ++  T   GR  A   ++I+   
Sbjct: 728 PARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIF--TTTDGR--ALDTFWIQDAF 783

Query: 298 GFPISSEAERQRVMACLEAAI--ERRASEGLE---------------------------- 327
           G          R+   +E A+  E R  E L                             
Sbjct: 784 GRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRF 843

Query: 328 --LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
             +E+   DR GLL D+TR L +  L I  A I+T G +  D F+VTD  G
Sbjct: 844 TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFG 894

Length = 931

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDA 374
           L+L+  DR GLL D+T +L E  L I R ++ST   GR V D FF+TDA
Sbjct: 3   LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGR-VLDLFFITDA 50

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 33/190 (17%)

Query: 15  PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SSDGGYLMDVFYV 73
             V I N      T I +   ++  + L+V+  +    L I  A I +S  GY++D F V
Sbjct: 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIV 724

Query: 74  TDINGQKIGD-------QATISYIKT-----------------TVETNASFLNSMRSSVG 109
           T++NG+ +         QA    + T                  V+T   FLN  +    
Sbjct: 725 TELNGKLLEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEK---- 780

Query: 110 VVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGC 169
               +E T +EL   DR GLL++VS V ++L+ ++++A+I T   +A     + +Q    
Sbjct: 781 ----QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQA 836

Query: 170 AIEDQKRLLK 179
             E++++ LK
Sbjct: 837 LDEEERKALK 846

Length = 854

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 36 NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIK 91
          +R G+L +V +   +  L +T+A IS+ G   ++VFYVTD NG  + D  TI  ++
Sbjct: 10 DRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVR 64

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 14  PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
           PPRV I        TV++V +++R G+L  +     DL L +  A I++ G  + DVF V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 74  TDINGQKI 81
           TD +GQ +
Sbjct: 838 TDADGQAL 845

Length = 867

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
           E+EL+  DR GLL+ ++++  E  L +  A+I+T+G K +D F +T+  G
Sbjct: 785 EMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQG 834

Length = 854

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDA 374
           L +  +DR GLL  I R+L E+ + +  A+I+T+G +V+DTF +  +
Sbjct: 789 LSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS 835

Length = 856

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 40/174 (22%)

Query: 15  PRVVID---NDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SSDGGYLMDV 70
           P V+I        E  T I + + ++H      +  +  LNL I  A I +S   + +D 
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDT 748

Query: 71  FYVTDINGQKIGDQ-ATISYIKTTVE---------------------------TNASFLN 102
           + V D +G+ IGD  A I  I+  +                            T  +  N
Sbjct: 749 YIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISN 808

Query: 103 SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARA 156
             +  V V+        E+   DRPGLL+ +  +  +   S+ +A+I T   R 
Sbjct: 809 DAQRPVTVL--------EIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERV 854

Length = 895

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 35/168 (20%)

Query: 248 TAVTIRSKDRPKLLFDTVCCLTDMQYV-VYHGTVVTGR--MEAYQEYYIKHVDGFPISSE 304
           T + I S DRP L F  VC   D + + V+   + T R  M A   + +   DG P+S +
Sbjct: 702 TEIFIWSPDRPYL-FAAVCAELDRRNLSVHDAQIFTSRDGM-AMDTFIVLEPDGSPLS-Q 758

Query: 305 AERQRVMACLEAAIE---------RRASEGLE--------------------LELYTDDR 335
              Q +   LE A+          RR    L                     +EL   D+
Sbjct: 759 DRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQ 818

Query: 336 FGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKI 383
            GLL+ + +I  + G+ +  A I+T+G +V+D F +  A    ++ ++
Sbjct: 819 PGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEEL 866

Length = 884

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
           + L   DR GLL+D+  +LR   L +  A I+T G + +D F +TD    P+
Sbjct: 799 ISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPL 850

Length = 869

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
           T +E+   DRPGLL+EV   L D   ++ S    T   +A  +  V        + D++ 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVV-------VVDEED 53

Query: 177 LLKIKKLLCNVLR 189
           L    + L  +L 
Sbjct: 54  LEAALEALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGR-KVKDTFFVTDASGNPV-DPK 382
           G E+ +YT DR GL + I   L + GL I  A I T       DTF V D  G P+ + +
Sbjct: 1   GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERE 60

Query: 383 IVDSIQHQI 391
            +  I+  +
Sbjct: 61  RLARIREAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 287 AYQEYYIKHVDGFPISSEAE----RQRVMACLEAAIERRASEGLELELYTDDRFGLLSDI 342
           AY +Y+++      I+  AE           L      R S G E+ +Y  D+ GL + +
Sbjct: 627 AYDDYFLRFTHK-EIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKV 685

Query: 343 TRILREYGLCIRRAEI-STMGRKVKDTFFVTDASGNPVDPKIVDSIQHQ-IGRTILQVKG 400
              L    L +  A++ +T      DTF V D  G+P           Q + + ++ V  
Sbjct: 686 AGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPA----AERVFQELLQGLVDVLA 741

Query: 401 NL-NTPPKLPQEPAR 414
            L   P  +    AR
Sbjct: 742 GLAKDPDTISARRAR 756

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 14  PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
           PPRV+  +     ATV++V + +R G+L  + + L    + +  A +++ G  ++DVFYV
Sbjct: 694 PPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYV 753

Query: 74  TD 75
           T 
Sbjct: 754 TG 755

Length = 774

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
            +EL   DR GLLS+V+ V  +   +V  AEI T    A  + +V D
Sbjct: 3   RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD 49

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 36/155 (23%)

Query: 52  NLVITKAYI-SSDGGYLMDVFYVTDINGQKIGDQATISYIKT------------------ 92
           NL +  A I +S  G  MD F V + +G  +  Q     I+                   
Sbjct: 726 NLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL-SQDRHQVIRKALEQALTQSSPQPPKPRR 784

Query: 93  --------TVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSV 144
                    V T  SFL +         +   + +EL   D+PGLL+ V  +  DL  S+
Sbjct: 785 LPAKLRHFNVPTEVSFLPT--------HTDRRSYMELIALDQPGLLARVGKIFADLGISL 836

Query: 145 VSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLK 179
             A I T   R   L  +         E+ ++ L+
Sbjct: 837 HGARITTIGERVEDLFILATADRRALNEELQQELR 871

Length = 884

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDS 386
            LE+   DR GLL+++   L + G+ I     ST G K     F+            +++
Sbjct: 2   VLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAG-IVFIVVVVDEEDLEAALEA 60

Query: 387 IQ 388
           ++
Sbjct: 61  LK 62

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSI 387
           L +   DR GLL+ +  +L E G+ I   E  T G   +   F+    G+    K+++++
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFI-VVDGDGDLEKLLEAL 59

Query: 388 Q 388
           +
Sbjct: 60  E 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 43/169 (25%), Positives = 64/169 (37%), Gaps = 25/169 (14%)

Query: 16  RVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SSDGGYLMDVFYVT 74
           R V DND  E    + V S +R G+   ++  L      I +A +  +    + DVF V 
Sbjct: 683 RAVPDNDALE----VFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVL 738

Query: 75  DINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSK------------------EY 116
             +    GD   ++      +  A  L  +R +   VP +                    
Sbjct: 739 PQDTYADGDPQRLA--AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRR 796

Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQ 165
           T I L   DRPGLL++V+ VL      V  A I T   RA     + D+
Sbjct: 797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE 845

Length = 869

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALL 160
           + ++G DRPGLL++V +VL +   ++ S E  T      A +
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADI 42

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 25/139 (17%)

Query: 125 DRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLL 184
           DR GLLS+ + VL      V SA + +H+  A     V  +  G   +            
Sbjct: 608 DRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPPDAA---------- 656

Query: 185 CNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFA-DRDFERLDCVNYNSRPHVTILDCS 243
             +LR   DLR         R L G+  +   L A +     +      + P V  LD +
Sbjct: 657 --LLRQ--DLR---------RALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGA 703

Query: 244 DRDYTAVTIRSKDRPKLLF 262
             D T + +R+ DRP LL 
Sbjct: 704 SPDATVLEVRAADRPGLLA 722

Length = 774

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDG--GYLMDVFYVTDING 78
          TV++V   +R G+L EV   L D  + I     S+ G    ++ +  V D   
Sbjct: 1  TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEED 53

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 125 DRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAAL--LHVKDQSSGCAIEDQKRLLKIKK 182
           DRPGL + ++  L  L  +++ A I+T      AL    V D   G  I +++RL +I++
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFT-TRDGYALDTFVVLDP-DGEPIGERERLARIRE 67

Query: 183 LLCNVL 188
            L + L
Sbjct: 68  ALEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
           T +++    +PG+L E   VLTDL   +  A I +       + HV DQ  G  + D   
Sbjct: 2   TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSL 60

Query: 177 LLKIKKLLC 185
           +  I+K L 
Sbjct: 61  IAYIEKSLG 69

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.95
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.95
PRK05007	884	PII uridylyl-transferase; Provisional	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
PRK04374	869	PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
PRK03059	856	PII uridylyl-transferase; Provisional	99.92
PRK03059	856	PII uridylyl-transferase; Provisional	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.91
PRK05092	931	PII uridylyl-transferase; Provisional	99.91
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.83
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.83
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.8
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.71
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.69
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.65
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.59
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.59
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.59
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.59
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.56
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.54
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.48
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.45
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.41
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.39
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.36
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.31
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.31
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.28
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.26
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.25
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.14
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.02
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.95
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.82
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.67
COG4747	142	ACT domain-containing protein [General function pr	98.67
COG4747	142	ACT domain-containing protein [General function pr	98.62
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.56
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.51
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.4
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.39
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.33
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.32
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.28
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.25
PRK07431	587	aspartate kinase; Provisional	98.15
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.07
PRK00194	90	hypothetical protein; Validated	97.98
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.98
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.95
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.89
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.89
PRK00194	90	hypothetical protein; Validated	97.88
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.87
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.85
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.85
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.78
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.75
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.63
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.63
COG3830	90	ACT domain-containing protein [Signal transduction	97.58
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.57
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.49
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.42
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.39
COG3830	90	ACT domain-containing protein [Signal transduction	97.35
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.21
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.21
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.21
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.15
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.15
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	97.14
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.14
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.12
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.1
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.07
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.07
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.05
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.04
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.03
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.02
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.01
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.0
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.99
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.99
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.95
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.93
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.92
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.91
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.9
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.82
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.79
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.79
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.77
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.76
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.76
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.75
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.73
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.71
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.68
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.65
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.57
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.54
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.54
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.54
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.38
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.34
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.33
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.31
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.27
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.26
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.25
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.19
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.17
PRK08577	136	hypothetical protein; Provisional	96.17
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.09
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.06
PRK04435	147	hypothetical protein; Provisional	96.0
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.0
PRK07431	587	aspartate kinase; Provisional	96.0
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	95.92
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.91
PRK08577	136	hypothetical protein; Provisional	95.9
PRK04435	147	hypothetical protein; Provisional	95.82
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.74
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.72
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.67
cd02116	60	ACT ACT domains are commonly involved in specifica	95.64
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.64
cd02116	60	ACT ACT domains are commonly involved in specifica	95.58
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.39
PRK07334	403	threonine dehydratase; Provisional	95.31
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.23
PRK11899	279	prephenate dehydratase; Provisional	95.18
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.1
PRK07334	403	threonine dehydratase; Provisional	95.1
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.88
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.75
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.63
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	94.62
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.49
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.43
PRK06635	404	aspartate kinase; Reviewed	94.32
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	94.12
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.1
PRK06291	465	aspartate kinase; Provisional	94.06
PRK08210	403	aspartate kinase I; Reviewed	93.73
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	93.7
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	93.34
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.3
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.26
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.21
COG1707	218	ACT domain-containing protein [General function pr	93.19
PRK06635	404	aspartate kinase; Reviewed	93.09
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.76
PRK09034	454	aspartate kinase; Reviewed	92.7
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.63
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	92.55
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.33
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.07
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	92.01
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	91.94
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.92
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	91.73
PLN02551	521	aspartokinase	91.67
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	91.65
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.55
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.21
PRK06382	406	threonine dehydratase; Provisional	91.08
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	90.97
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	90.79
PRK08210	403	aspartate kinase I; Reviewed	90.68
PRK09181	475	aspartate kinase; Validated	90.64
PRK06545	359	prephenate dehydrogenase; Validated	90.33
PRK06349	426	homoserine dehydrogenase; Provisional	89.86
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	89.85
PRK06291	465	aspartate kinase; Provisional	89.48
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	88.96
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	88.67
PRK11899	279	prephenate dehydratase; Provisional	88.56
COG1707	218	ACT domain-containing protein [General function pr	88.51
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	88.39
PRK09034	454	aspartate kinase; Reviewed	88.35
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	88.26
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.15
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	88.08
PLN02551	521	aspartokinase	87.45
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.17
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	87.02
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	86.66
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.64
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.55
PRK09084	448	aspartate kinase III; Validated	86.54
PRK08818	370	prephenate dehydrogenase; Provisional	86.52
PRK08198	404	threonine dehydratase; Provisional	86.51
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	86.38
PRK06382	406	threonine dehydratase; Provisional	86.24
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	86.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	85.64
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	85.58
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	85.35
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	85.14
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	84.98
PRK06545	359	prephenate dehydrogenase; Validated	84.7
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	84.64
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	84.32
PRK06349	426	homoserine dehydrogenase; Provisional	84.09
PRK08818	370	prephenate dehydrogenase; Provisional	83.99
PRK12483	521	threonine dehydratase; Reviewed	83.84
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	83.2
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	83.17
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	83.03
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	82.25
PRK09181	475	aspartate kinase; Validated	81.81
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	81.65
PLN02317	382	arogenate dehydratase	81.38
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	81.35
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	80.69
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	80.65
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	80.6
PRK08198	404	threonine dehydratase; Provisional	80.12

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.9e-28  Score=269.36  Aligned_cols=163  Identities=21%  Similarity=0.371  Sum_probs=147.6

Q ss_pred             CCCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeEEEEEEEEccCCCCCCcHHHHHHH
Q 013722          232 NSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVT-GRMEAYQEYYIKHVDGFPISSEAERQRV  310 (437)
Q Consensus       232 ~~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t-~~g~ald~F~V~~~~g~~~~~~~~~~~l  310 (437)
                      ..+|.|.+++.++.++++|+|+++||||||++++++|..+|+||.+|+|.| .+|+++|+|+|++++|.++. ++++++|
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l  740 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence            357888999999999999999999999999999999999999999999999 57899999999999999885 5688899


Q ss_pred             HHHHHHHHhh--------cc---------C-----------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722          311 MACLEAAIER--------RA---------S-----------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG  362 (437)
Q Consensus       311 ~~~L~~~l~~--------~~---------~-----------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g  362 (437)
                      ++.|.++|..        +.         |           ..|+|+|.|.|||||||+|+++|.++|++|++|||+|+|
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g  820 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG  820 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence            9999998731        00         1           148999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722          363 RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI  395 (437)
Q Consensus       363 ~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~  395 (437)
                      +||+|+|||+|.+|+|++++++++|+++|.+++
T Consensus       821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l  853 (854)
T PRK01759        821 EKAEDFFILTNQQGQALDEEERKALKSRLLSNL  853 (854)
T ss_pred             ceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            999999999999999998766699999998854

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=5.3e-28  Score=269.19  Aligned_cols=163  Identities=23%  Similarity=0.387  Sum_probs=148.7

Q ss_pred             CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHH
Q 013722          233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVM  311 (437)
Q Consensus       233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~  311 (437)
                      .+|.|.+++.++.++++|+|+++||||||++++++|+.+|+||.+|+|+|+ +|+++|+|+|++++|.++. ++++++|+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence            578899999999999999999999999999999999999999999999997 5799999999999999884 56889999


Q ss_pred             HHHHHHHhhc---------cC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722          312 ACLEAAIERR---------AS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG  362 (437)
Q Consensus       312 ~~L~~~l~~~---------~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g  362 (437)
                      +.|+++|..+         .|                    ..|+|||.|.|||||||+|+++|.++|++|++|||+|+|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            9999988321         11                    148999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013722          363 RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTIL  396 (437)
Q Consensus       363 ~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~  396 (437)
                      ++|+|+|||++.+|.|++++.+++|+++|.+++-
T Consensus       846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        846 ERVEDLFILATADRRALNEELQQELRQRLTEALN  879 (884)
T ss_pred             ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999998788999999998663

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.9e-27  Score=249.79  Aligned_cols=166  Identities=27%  Similarity=0.414  Sum_probs=150.2

Q ss_pred             CCCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHH
Q 013722          232 NSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRV  310 (437)
Q Consensus       232 ~~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l  310 (437)
                      ..+|.|.+...+..+.++|+||+||+|.||+.+|.++...|+||++|+|+|+ +||++|+|+|++++|.++. +++...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence            5679999999999999999999999999999999999999999999999996 7999999999999999988 5688888


Q ss_pred             HHHHHHHHhh---------ccC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec
Q 013722          311 MACLEAAIER---------RAS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM  361 (437)
Q Consensus       311 ~~~L~~~l~~---------~~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~  361 (437)
                      +..|.+++..         +.+                    +.|+|||++.||||||+.|+++|.+++++|++|||+|+
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            8888888731         111                    14899999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722          362 GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV  398 (437)
Q Consensus       362 g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~  398 (437)
                      |++|+|+|||++..|.+++++.++.+.+.|.++++..
T Consensus       828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~  864 (867)
T COG2844         828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN  864 (867)
T ss_pred             cccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999888888999888866644

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.5e-26  Score=254.98  Aligned_cols=176  Identities=24%  Similarity=0.325  Sum_probs=151.3

Q ss_pred             ccCCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHH
Q 013722           11 RMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISY   89 (437)
Q Consensus        11 ~~~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~   89 (437)
                      ...+|.|.+++..+.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++++|.++. +..++.
T Consensus       661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~  739 (854)
T PRK01759        661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ  739 (854)
T ss_pred             cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence            3457899999999999999999999999999999999999999999999987 89999999999999999885 456666


Q ss_pred             HHHHHhhccCc----cc-------------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec
Q 013722           90 IKTTVETNASF----LN-------------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH  152 (437)
Q Consensus        90 l~~~L~~~~~~----~~-------------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~  152 (437)
                      |+++|......    ..             ++...++++.+..+|+|+|.+.||||||++|+++|.++|++|++|+|+|.
T Consensus       740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~  819 (854)
T PRK01759        740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI  819 (854)
T ss_pred             HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence            66666554321    00             11123456778899999999999999999999999999999999999999


Q ss_pred             CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722          153 NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR  189 (437)
Q Consensus       153 ~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~  189 (437)
                      |+++.|+|||++ ..|.++.++++ +.|+++|.++|.
T Consensus       820 gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l~  854 (854)
T PRK01759        820 GEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNLS  854 (854)
T ss_pred             CceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhC
Confidence            999999999999 48999976666 999999998763

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=6.9e-26  Score=252.29  Aligned_cols=175  Identities=23%  Similarity=0.300  Sum_probs=150.2

Q ss_pred             CCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHH
Q 013722           13 NPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIK   91 (437)
Q Consensus        13 ~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~   91 (437)
                      .+|.|.+++..+.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++.+|.+++ +..++.|+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence            57899999999999999999999999999999999999999999999987 56799999999999999875 34555566


Q ss_pred             HHHhhccC----cc---c-----------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC
Q 013722           92 TTVETNAS----FL---N-----------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN  153 (437)
Q Consensus        92 ~~L~~~~~----~~---~-----------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~  153 (437)
                      +.|.....    ..   .           ++...++++.+..+|+|+|.+.||||||++|+++|.++|++|++|+|+|.|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            55554321    10   0           111234567888999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          154 ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       154 ~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      +++.|+|||++ ..|.+++ +++.+.|+++|.++|..
T Consensus       846 era~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        846 ERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             ceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            99999999999 5889885 78889999999999865

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.3e-25  Score=250.11  Aligned_cols=168  Identities=26%  Similarity=0.433  Sum_probs=147.0

Q ss_pred             CCcEEEEEecCC---CCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCC-cHHHH
Q 013722          233 SRPHVTILDCSD---RDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPIS-SEAER  307 (437)
Q Consensus       233 ~~p~V~v~~~~~---~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~-~~~~~  307 (437)
                      ..|.|.+.+.++   .++++|+||++||||||+++|++|+.+|+||++|+|+|+ +|+++|+|+|++++|.++. ++.++
T Consensus       687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence            457777877665   699999999999999999999999999999999999886 6899999999999999854 45788


Q ss_pred             HHHHHHHHHHHhh----------ccC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEE
Q 013722          308 QRVMACLEAAIER----------RAS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAE  357 (437)
Q Consensus       308 ~~l~~~L~~~l~~----------~~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~  357 (437)
                      ++|++.|.++|..          +.+                    ..|+|+|.+.|||||||+|+.+|.++|+||++|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence            9999999988731          110                    1489999999999999999999999999999999


Q ss_pred             eeecCCeEEEEEEEEcCCCCCCCh-HHHHHHHHHHhhccccccc
Q 013722          358 ISTMGRKVKDTFFVTDASGNPVDP-KIVDSIQHQIGRTILQVKG  400 (437)
Q Consensus       358 I~T~g~~a~D~F~v~d~~g~~l~~-~~~~~l~~~L~~~~~~~~~  400 (437)
                      |.|.|++|+|+|||+|.+|.|+++ +.+++|+++|.+++.+..+
T Consensus       847 I~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~  890 (895)
T PRK00275        847 IATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNE  890 (895)
T ss_pred             EEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999975 6778999999997755443

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=7e-25  Score=244.31  Aligned_cols=180  Identities=22%  Similarity=0.384  Sum_probs=151.3

Q ss_pred             cCCCEEEEeeCCC---CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCC-cHHH
Q 013722           12 MNPPRVVIDNDVC---EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIG-DQAT   86 (437)
Q Consensus        12 ~~~~~V~v~~~~~---~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~-~~~~   86 (437)
                      ...|.|.+++...   .+.++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++++|.++. ++.+
T Consensus       686 ~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r  765 (895)
T PRK00275        686 DGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPAR  765 (895)
T ss_pred             CCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHH
Confidence            3467888887765   58999999999999999999999999999999999975 78999999999999999854 3456


Q ss_pred             HHHHHHHHhhccC----cc----c-----------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEE
Q 013722           87 ISYIKTTVETNAS----FL----N-----------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSA  147 (437)
Q Consensus        87 ~~~l~~~L~~~~~----~~----~-----------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A  147 (437)
                      ++.|+++|...+.    .+    .           ++...++++.+.++|+|+|.+.||||||++|+++|+.+|+||++|
T Consensus       766 ~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~A  845 (895)
T PRK00275        766 IEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNA  845 (895)
T ss_pred             HHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEe
Confidence            6667666655421    10    0           011124457778899999999999999999999999999999999


Q ss_pred             EEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhccCC
Q 013722          148 EIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNG  192 (437)
Q Consensus       148 ~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g~~  192 (437)
                      +|+|.|+++.|+|+|+++ .|.++.+++++++|+++|.++|.+..
T Consensus       846 kI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~~~L~~~~  889 (895)
T PRK00275        846 KIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAICEQLDARN  889 (895)
T ss_pred             EEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHhccc
Confidence            999999999999999994 88998888899999999999997653

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=4.8e-25  Score=244.25  Aligned_cols=162  Identities=22%  Similarity=0.355  Sum_probs=141.4

Q ss_pred             CCcEEEEEe-cCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHH
Q 013722          233 SRPHVTILD-CSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRV  310 (437)
Q Consensus       233 ~~p~V~v~~-~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l  310 (437)
                      ..|.|.+.. .++.++++|+|+++||||||+++|++|+.+|+||++|+|+|+ +|+++|+|+|.+++|..   ...++++
T Consensus       675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i  751 (869)
T PRK04374        675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRL  751 (869)
T ss_pred             CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHH
Confidence            356676655 778899999999999999999999999999999999999995 79999999999999875   2457778


Q ss_pred             HHHHHHHHhh----------ccC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee
Q 013722          311 MACLEAAIER----------RAS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEIST  360 (437)
Q Consensus       311 ~~~L~~~l~~----------~~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T  360 (437)
                      ++.|+++|..          +.+                    ..|+|+|.|.|||||||+|+.+|.++|+||++|||+|
T Consensus       752 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T  831 (869)
T PRK04374        752 AAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT  831 (869)
T ss_pred             HHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe
Confidence            8888887731          111                    1389999999999999999999999999999999999


Q ss_pred             cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccc
Q 013722          361 MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQ  397 (437)
Q Consensus       361 ~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~  397 (437)
                      .|++|+|+|||+|.+|.+++++++++|+++|.+++-+
T Consensus       832 ~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~~  868 (869)
T PRK04374        832 FGERAEDQFQITDEHDRPLSESARQALRDALCACLDP  868 (869)
T ss_pred             cCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhcc
Confidence            9999999999999999998776669999999987643

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=1.2e-24  Score=242.70  Aligned_cols=163  Identities=26%  Similarity=0.335  Sum_probs=148.0

Q ss_pred             CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHH
Q 013722          233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVM  311 (437)
Q Consensus       233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~  311 (437)
                      ..|.|.+.+....++++|+|+++||||||++++++|+.+|+||++|+|+|+ +|+++|+|+|++++|.++.++.++++|+
T Consensus       654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            468888888777999999999999999999999999999999999999965 7899999999999999888777899999


Q ss_pred             HHHHHHHhh-----------c-cC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEee
Q 013722          312 ACLEAAIER-----------R-AS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEIS  359 (437)
Q Consensus       312 ~~L~~~l~~-----------~-~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~  359 (437)
                      +.|.++|..           + .+                    ..|+|+|.+.|||||||+|+++|.++|++|++|+|+
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            999888731           1 11                    148999999999999999999999999999999999


Q ss_pred             ecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722          360 TMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI  395 (437)
Q Consensus       360 T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~  395 (437)
                      |.|++++|+|||++..|.|+++++++.|+++|.+++
T Consensus       814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999998888899999998865

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.92  E-value=9.3e-24  Score=235.64  Aligned_cols=175  Identities=23%  Similarity=0.309  Sum_probs=149.4

Q ss_pred             cCCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-EeCCEEEEEEEEEeCCCCCCCcHHHHHHH
Q 013722           12 MNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS-SDGGYLMDVFYVTDINGQKIGDQATISYI   90 (437)
Q Consensus        12 ~~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~l   90 (437)
                      ...|.|.+++....+.++|+|+++||||||++|+++|+.+|+||++|+|+ |.+|+++|+|+|++.+|.++.++..++.|
T Consensus       653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i  732 (850)
T TIGR01693       653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL  732 (850)
T ss_pred             CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence            44789999987778999999999999999999999999999999999998 68999999999999999988776666666


Q ss_pred             HHHHhhccC----cc-----c------------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEE
Q 013722           91 KTTVETNAS----FL-----N------------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEI  149 (437)
Q Consensus        91 ~~~L~~~~~----~~-----~------------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i  149 (437)
                      ++.|.+...    .+     +            ++...++++.+..+|+|+|.+.||||||++|+++|+++|++|++|+|
T Consensus       733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i  812 (850)
T TIGR01693       733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI  812 (850)
T ss_pred             HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence            665544321    11     0            01113445778899999999999999999999999999999999999


Q ss_pred             EecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          150 WTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       150 ~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      .|.++++.|+|+|++ ..|.++.+ ++++.|+++|.++|
T Consensus       813 ~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       813 TTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             EecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999 47899865 78899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=7.2e-24  Score=233.27  Aligned_cols=154  Identities=27%  Similarity=0.365  Sum_probs=134.4

Q ss_pred             CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHH
Q 013722          233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMA  312 (437)
Q Consensus       233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~  312 (437)
                      ..|.|.+++.. .+.++|+|+|+||||||+++|++|+.+|+||++|+|+|.+|+++|+|+|.+++|.+..    ++++++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~----~~~l~~  660 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPD----AALLRQ  660 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcch----HHHHHH
Confidence            45788888888 9999999999999999999999999999999999999988999999999999987653    356666


Q ss_pred             HHHHHHh-----------hccC-----------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722          313 CLEAAIE-----------RRAS-----------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEI  358 (437)
Q Consensus       313 ~L~~~l~-----------~~~~-----------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I  358 (437)
                      .|+++|.           ++.+                       ..|+|+|.+.|||||||+|+.+|.++|+||++|+|
T Consensus       661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI  740 (774)
T PRK03381        661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV  740 (774)
T ss_pred             HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence            6666542           1100                       03899999999999999999999999999999999


Q ss_pred             eecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013722          359 STMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIG  392 (437)
Q Consensus       359 ~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~  392 (437)
                      .|.|++|+|+|||+|.+|.+++++ +++|+++|.
T Consensus       741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            999999999999999999999866 788888775

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.5e-23  Score=232.32  Aligned_cols=175  Identities=23%  Similarity=0.275  Sum_probs=140.9

Q ss_pred             CCCEEEEee-CCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCc-HHHHHH
Q 013722           13 NPPRVVIDN-DVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGD-QATISY   89 (437)
Q Consensus        13 ~~~~V~v~~-~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~-~~~~~~   89 (437)
                      ..|.|.+.. ....+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.+... ....+.
T Consensus       675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~  754 (869)
T PRK04374        675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAA  754 (869)
T ss_pred             CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHH
Confidence            467777655 66678999999999999999999999999999999999987 799999999999998874211 123334


Q ss_pred             HHHHHhhccCc--c--c-----------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCc
Q 013722           90 IKTTVETNASF--L--N-----------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNA  154 (437)
Q Consensus        90 l~~~L~~~~~~--~--~-----------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~  154 (437)
                      |+++|.+....  .  +           ++...++++.+...|+|+|.+.||||||++|+++|+.+|+||++|+|+|.|+
T Consensus       755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~  834 (869)
T PRK04374        755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGE  834 (869)
T ss_pred             HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCC
Confidence            44455442210  0  0           0111234567778999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722          155 RAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR  189 (437)
Q Consensus       155 ~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~  189 (437)
                      ++.|+|+|+++ .|.++.++++ +.|+++|.++|.
T Consensus       835 ~a~D~F~V~d~-~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        835 RAEDQFQITDE-HDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             EEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHhc
Confidence            99999999994 7888766666 999999998884

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=9.2e-24  Score=234.41  Aligned_cols=158  Identities=20%  Similarity=0.276  Sum_probs=138.2

Q ss_pred             CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHH
Q 013722          233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVM  311 (437)
Q Consensus       233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~  311 (437)
                      ..|.|.+...++.+.++|+|+++||||||+++|++|+.+|+||++|+|+|+ +|+++|+|+|++++|. ...+.++++|+
T Consensus       664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~  742 (856)
T PRK03059        664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVE  742 (856)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence            467888888889999999999999999999999999999999999999886 6999999999999888 44566899999


Q ss_pred             HHHHHHHhh----------ccC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec
Q 013722          312 ACLEAAIER----------RAS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM  361 (437)
Q Consensus       312 ~~L~~~l~~----------~~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~  361 (437)
                      +.|+++|..          +.|                    ..|+|+|.++|||||||+|+.+|.++|+||++|+|.|.
T Consensus       743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~  822 (856)
T PRK03059        743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL  822 (856)
T ss_pred             HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence            999988731          111                    13899999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEEcCCCCCC-ChHHHHHHHHHHhhc
Q 013722          362 GRKVKDTFFVTDASGNPV-DPKIVDSIQHQIGRT  394 (437)
Q Consensus       362 g~~a~D~F~v~d~~g~~l-~~~~~~~l~~~L~~~  394 (437)
                      |++|+|+|||++   .++ +++++++|++.|.++
T Consensus       823 ~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~  853 (856)
T PRK03059        823 GERVEDTFLIDG---SGLSDNRLQIQLETELLDA  853 (856)
T ss_pred             CCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHH
Confidence            999999999954   334 356788999999874

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=2.2e-23  Score=231.35  Aligned_cols=173  Identities=17%  Similarity=0.296  Sum_probs=142.9

Q ss_pred             cCCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHH
Q 013722           12 MNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYI   90 (437)
Q Consensus        12 ~~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l   90 (437)
                      ...|.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ...+..+++|
T Consensus       663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i  741 (856)
T PRK03059        663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV  741 (856)
T ss_pred             CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence            346888898888889999999999999999999999999999999999975 78999999999998887 3444566666


Q ss_pred             HHHHhhccC----cc----cC---------cc--eeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722           91 KTTVETNAS----FL----NS---------MR--SSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus        91 ~~~L~~~~~----~~----~~---------~~--r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                      ++.|.....    ..    ..         .+  ..++++++.+.|+|+|.++||||||++|+++|+.+|+||++|+|+|
T Consensus       742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T  821 (856)
T PRK03059        742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT  821 (856)
T ss_pred             HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence            666555321    11    00         00  1233466778999999999999999999999999999999999999


Q ss_pred             cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722          152 HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR  189 (437)
Q Consensus       152 ~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~  189 (437)
                      .|+++.|+|+|+++    +..+++++++|++.|.++|.
T Consensus       822 ~~~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        822 LGERVEDTFLIDGS----GLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             cCCEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence            99999999999653    23468899999999998874

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=2.9e-23  Score=233.20  Aligned_cols=179  Identities=25%  Similarity=0.369  Sum_probs=154.3

Q ss_pred             CCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHH
Q 013722           13 NPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIK   91 (437)
Q Consensus        13 ~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~   91 (437)
                      .++.|.+++....+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++++|.+..+++.++.|+
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            45788899988889999999999999999999999999999999999987 78999999999999998876666777777


Q ss_pred             HHHhhccC----cc-----c-Cc-----------ceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722           92 TTVETNAS----FL-----N-SM-----------RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW  150 (437)
Q Consensus        92 ~~L~~~~~----~~-----~-~~-----------~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~  150 (437)
                      +.|.....    .+     . ..           ...++++.+..+|+|+|.+.||||||++|+++|+++|+||.+|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            77655431    10     0 01           1124456777889999999999999999999999999999999999


Q ss_pred             ecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhccCC
Q 013722          151 THNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNG  192 (437)
Q Consensus       151 T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g~~  192 (437)
                      |.++++.|+|+|++. .|.++.++++++.|+++|.++|.++.
T Consensus       878 T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~~~  918 (931)
T PRK05092        878 TYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAEGE  918 (931)
T ss_pred             EcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence            999999999999994 88888888889999999999998755

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=3.1e-23  Score=228.31  Aligned_cols=169  Identities=20%  Similarity=0.210  Sum_probs=140.5

Q ss_pred             CCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 013722           13 NPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKT   92 (437)
Q Consensus        13 ~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~   92 (437)
                      .+|.|.+.+.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.+++|.+...+...+.|++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~  664 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR  664 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence            57899998888 89999999999999999999999999999999999999999999999999998886543445566666


Q ss_pred             HHhhccCc-----ccC-c-------------ceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC
Q 013722           93 TVETNASF-----LNS-M-------------RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN  153 (437)
Q Consensus        93 ~L~~~~~~-----~~~-~-------------~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~  153 (437)
                      +|.+....     ... .             ...+++..+...|+|+|.++||||||++|+++|+.+|+||++|+|.|.|
T Consensus       665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g  744 (774)
T PRK03381        665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG  744 (774)
T ss_pred             HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            66653211     000 0             0123346666789999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          154 ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       154 ~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      +++.|+|||+++ .|.+++++  .+.|+++|.
T Consensus       745 ~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        745 ADVVDVFYVTGA-AGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             CeEEEEEEEECC-CCCcCchH--HHHHHHHhh
Confidence            999999999994 88888654  677777764

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=3.7e-23  Score=232.35  Aligned_cols=165  Identities=23%  Similarity=0.287  Sum_probs=148.2

Q ss_pred             CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHH
Q 013722          233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVM  311 (437)
Q Consensus       233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~  311 (437)
                      .++.|.+++.++.++++|+|+++||||||++++++|+.+|+||++|+|+|+ +|+++|+|+|++++|.+..+++.+++|+
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            457788899888999999999999999999999999999999999999995 7899999999999998877788999999


Q ss_pred             HHHHHHHhh----------c-cC---------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEee
Q 013722          312 ACLEAAIER----------R-AS---------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEIS  359 (437)
Q Consensus       312 ~~L~~~l~~----------~-~~---------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~  359 (437)
                      +.|++++..          + .+                     ..|+|+|.+.|||||||+|+++|.++|+||++|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            999888721          1 11                     137999999999999999999999999999999999


Q ss_pred             ecCCeEEEEEEEEcCCCCCCCh-HHHHHHHHHHhhcccc
Q 013722          360 TMGRKVKDTFFVTDASGNPVDP-KIVDSIQHQIGRTILQ  397 (437)
Q Consensus       360 T~g~~a~D~F~v~d~~g~~l~~-~~~~~l~~~L~~~~~~  397 (437)
                      |.|+++.|+|||++.+|.++.+ +.+++|+++|.+++.+
T Consensus       878 T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        878 TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999964 5778999999987654

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.2e-23  Score=220.68  Aligned_cols=177  Identities=24%  Similarity=0.314  Sum_probs=147.2

Q ss_pred             cCCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHH
Q 013722           12 MNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYI   90 (437)
Q Consensus        12 ~~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l   90 (437)
                      ..+|.|.+......+.++|+|++||+|.||+.+|+.+...|+||++|+|+| .+|+++|+|+|.+++|.++. +++...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence            577999999888889999999999999999999999999999999999986 88999999999999999887 4555666


Q ss_pred             HHHHhhcc----Cccc---Ccce-----------eeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec
Q 013722           91 KTTVETNA----SFLN---SMRS-----------SVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH  152 (437)
Q Consensus        91 ~~~L~~~~----~~~~---~~~r-----------~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~  152 (437)
                      ++.|.+..    ..|.   .++|           .+.++.+...|+|+|.+.||||||+.|+++|++++++|++|+|+|.
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            66555442    1111   1111           2334666789999999999999999999999999999999999999


Q ss_pred             CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhccC
Q 013722          153 NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTN  191 (437)
Q Consensus       153 ~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g~  191 (437)
                      |++++|+|+|++. .|.++ +++..+.+.+.+.+++...
T Consensus       828 GErveD~F~vt~~-~~~~l-~~~~~q~l~~~ll~al~~~  864 (867)
T COG2844         828 GERVEDVFIVTDA-DGQAL-NAELRQSLLQRLLEALLPN  864 (867)
T ss_pred             cccceeEEEEecc-ccccC-CHHHHHHHHHHHHHHhccc
Confidence            9999999999994 88888 5556677777777766543

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=2.1e-20  Score=144.74  Aligned_cols=68  Identities=28%  Similarity=0.489  Sum_probs=64.5

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCC-hHHHHHHHHHHhh
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD-PKIVDSIQHQIGR  393 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~-~~~~~~l~~~L~~  393 (437)
                      |+|||.++|||||||+|+++|+++|++|++|||+|+|++|+|+|||+|.+|+|++ ++.+++|+++|..
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            7999999999999999999999999999999999999999999999999999996 5788899998864

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=2.6e-20  Score=145.20  Aligned_cols=70  Identities=17%  Similarity=0.268  Sum_probs=66.1

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCC-hHHHHHHHHHHhhcc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD-PKIVDSIQHQIGRTI  395 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~-~~~~~~l~~~L~~~~  395 (437)
                      |+|||.++|||||||+|+++|.++|++|++|+|+|+|++|+|+|||++.+|.|++ ++++++|+++|.+++
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al   72 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI   72 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999997 467889999998854

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.80  E-value=2.3e-19  Score=139.91  Aligned_cols=70  Identities=24%  Similarity=0.374  Sum_probs=65.0

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEee--ecCCeEEEEEEEEcCCCCCCC-hHHHHHHHHHHhhccc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEIS--TMGRKVKDTFFVTDASGNPVD-PKIVDSIQHQIGRTIL  396 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~--T~g~~a~D~F~v~d~~g~~l~-~~~~~~l~~~L~~~~~  396 (437)
                      |+|+|.+.|||||||+|+++|+++|++|++|||+  |+|++|+|+||| +.+|+|++ +++++.|+++|.+++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999  999999999999 78899986 5788999999998653

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=7.5e-17  Score=125.81  Aligned_cols=73  Identities=25%  Similarity=0.346  Sum_probs=69.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR  189 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~  189 (437)
                      +|+|+|.++||||||++|+++|+++|++|.+|+|.|.|+++.|+|||++ ..|.++.++++.+.|+++|.++|.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999999999999999999 589999999999999999998875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.69  E-value=1.8e-16  Score=122.76  Aligned_cols=69  Identities=29%  Similarity=0.409  Sum_probs=65.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      +|+|+|.++||||||++|+++|+++|++|++|+|.|.|+++.|+|||++ ..|.++.++++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999999999 48999988999999998875

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.65  E-value=9.1e-16  Score=119.70  Aligned_cols=72  Identities=21%  Similarity=0.243  Sum_probs=67.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE--ecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW--THNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~--T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      |+++|.++||||||++|+++|+++|++|++|+|.  |.|+++.|+||| + ..|.++.++++.+.|+++|.++|..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999  999999999999 6 4788898999999999999988754

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.59  E-value=9.3e-15  Score=114.62  Aligned_cols=73  Identities=60%  Similarity=0.898  Sum_probs=68.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCC-CCcCCCHHHHHHHHHHHhhhhcc
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSS-GCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~-g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      |+|+|.++||||||++|+++|+.+|+||++|+++|.++++.|+|+|+++ . +.++.++++++++++.|.++|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999999999999999999999999999995 5 77777888999999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.59  E-value=3.1e-14  Score=131.22  Aligned_cols=157  Identities=15%  Similarity=0.216  Sum_probs=110.6

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhcc---Cc
Q 013722           24 CEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNA---SF  100 (437)
Q Consensus        24 ~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~---~~  100 (437)
                      ...+++|+++++||||+++.++++|+++||||.+.+....+|.+.-++.|   .+.+    ...+.|+.+|....   .+
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~~----~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGSW----NAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCCh----hHHHHHHHHHHhhhhhcCe
Confidence            45789999999999999999999999999999999999999988777777   3333    35567777776543   11


Q ss_pred             ccCcceeee--ecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCc--eeEEEEEEEeCCCCCcCCCHHH
Q 013722          101 LNSMRSSVG--VVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNA--RAAALLHVKDQSSGCAIEDQKR  176 (437)
Q Consensus       101 ~~~~~r~v~--~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~--~~~d~F~V~~~~~g~~~~~~~~  176 (437)
                      .....+.-.  .......+.++|.+.||||++++||++|+.+|+||.+.+..|.+.  .....|...- .-.-|.  ...
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~-~v~lP~--~~~  154 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQI-TAHSPA--SQD  154 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEE-EEEcCC--CCC
Confidence            111111000  011122589999999999999999999999999999999988764  3444554433 111221  223


Q ss_pred             HHHHHHHHhhhhcc
Q 013722          177 LLKIKKLLCNVLRT  190 (437)
Q Consensus       177 ~~~l~~~L~~aL~g  190 (437)
                      ...|+++|.+....
T Consensus       155 ~~~L~~~l~~l~~e  168 (190)
T PRK11589        155 AANIEQAFKALCTE  168 (190)
T ss_pred             HHHHHHHHHHHHHH
Confidence            47777777755544

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.59  E-value=8.4e-15  Score=114.87  Aligned_cols=70  Identities=26%  Similarity=0.409  Sum_probs=64.5

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCC-CCCCCh-HHHHHHHHHHhhcc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDAS-GNPVDP-KIVDSIQHQIGRTI  395 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~-g~~l~~-~~~~~l~~~L~~~~  395 (437)
                      |+|+|.++|||||+++|+++|+++|+||++|+|.|.|+++.|+|||+|.+ |.++.+ ++++++++.|.+++
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l   72 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL   72 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999987 888854 67799999998754

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.59  E-value=1.1e-14  Score=114.75  Aligned_cols=69  Identities=35%  Similarity=0.467  Sum_probs=61.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee-cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEIST-MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI  395 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T-~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~  395 (437)
                      ++||.++|||||||+|+++|+++|++|++|+|.| .|+++.|+|||+|.+|+..+++.+++++++|.+++
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L   71 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL   71 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999997 89999999999998777445567788888887753

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.56  E-value=2.7e-14  Score=111.67  Aligned_cols=69  Identities=33%  Similarity=0.476  Sum_probs=63.3

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-CCeEEEEEEEEcCCCCCCC-hHHHHHHHHHHhhc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTM-GRKVKDTFFVTDASGNPVD-PKIVDSIQHQIGRT  394 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g~~a~D~F~v~d~~g~~l~-~~~~~~l~~~L~~~  394 (437)
                      +.|+|.++||||||++|+.+|+.+|+||++|+|.|. ++++.|+|||++.+|.++. +++.+++++.|.++
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~   72 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA   72 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999998 5999999999999999885 56788999998875

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.54  E-value=6.2e-14  Score=109.60  Aligned_cols=69  Identities=29%  Similarity=0.490  Sum_probs=63.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722           28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD-GGYLMDVFYVTDINGQKIGDQATISYIKTTVET   96 (437)
Q Consensus        28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~   96 (437)
                      ++|+|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.++.++++|++.|.+
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999986 799999999999999887777788889988865

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.48  E-value=3e-13  Score=106.59  Aligned_cols=71  Identities=27%  Similarity=0.384  Sum_probs=64.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      +++|.++||||||++|+++|+.+|+||++|+|.| .++++.|+|+|+++ .+. ..+++++++++++|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 89999999999995 555 44678999999999988864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.45  E-value=1.7e-12  Score=119.65  Aligned_cols=121  Identities=11%  Similarity=0.067  Sum_probs=93.5

Q ss_pred             CCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh----
Q 013722          244 DRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE----  319 (437)
Q Consensus       244 ~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~----  319 (437)
                      ...+..|+++++||||+.+++++.|+++||||.+.+....+|+---.+.|..+       +...+.|+..|...-+    
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~-------~~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS-------WNAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC-------hhHHHHHHHHHHhhhhhcCe
Confidence            45678999999999999999999999999999999999987732234444222       2356677776655321    


Q ss_pred             ----hcc-C-------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCC--eEEEEEEE
Q 013722          320 ----RRA-S-------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGR--KVKDTFFV  371 (437)
Q Consensus       320 ----~~~-~-------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~--~a~D~F~v  371 (437)
                          ++. +       .++.++|.+.||||+++.||++|+++||||...+-.|++.  ...+.|..
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~  143 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHI  143 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEE
Confidence                121 1       1379999999999999999999999999999999999984  55555554

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.41  E-value=1.6e-12  Score=99.41  Aligned_cols=52  Identities=29%  Similarity=0.364  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCC
Q 013722           28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQ   79 (437)
Q Consensus        28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~   79 (437)
                      .+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+.+|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~   54 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG   54 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence            58999999999999999999999999999999985 78999999999998886

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.39  E-value=2.6e-12  Score=98.29  Aligned_cols=64  Identities=17%  Similarity=0.174  Sum_probs=54.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH
Q 013722          248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAA  317 (437)
Q Consensus       248 t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~  317 (437)
                      .+|+|+++||||||++++++|..+|+||++|+|+|+ +|+++|+|+|++.+|.      ....|+++|.++
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~   66 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKE   66 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHh
Confidence            589999999999999999999999999999999986 6999999999999885      334444554443

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.36  E-value=6.3e-12  Score=97.98  Aligned_cols=69  Identities=57%  Similarity=0.967  Sum_probs=63.0

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      ++.|+|.++||||+|++|+.+|+++|+||.+|++.|.++.+.|+|+|.+.+|.+++++..++++++|..
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~   69 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGP   69 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhcc
Confidence            367999999999999999999999999999999999988999999999999988866677888888874

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.31  E-value=1.9e-11  Score=95.29  Aligned_cols=68  Identities=31%  Similarity=0.564  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722           28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVET   96 (437)
Q Consensus        28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~   96 (437)
                      ++|+|+++|+||+|++++++|+++|+||.+|.++|.+++++|+|+|.++++.++ +++++++|+++|..
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~   69 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGP   69 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcc
Confidence            689999999999999999999999999999999988889999999999988877 55788889988864

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.31  E-value=8.7e-12  Score=110.42  Aligned_cols=157  Identities=14%  Similarity=0.206  Sum_probs=116.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccC---cc
Q 013722           25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNAS---FL  101 (437)
Q Consensus        25 ~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~---~~  101 (437)
                      +++++|+++++||||+...+++...++||||.++++...|+.+.-+..|   .|.|    +....|+++|....+   +.
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sgs~----dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SGSW----DAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---eeCH----HHHHHHHHHhhcccccCCeE
Confidence            4678999999999999999999999999999999999999887755545   4554    567889998876532   21


Q ss_pred             cCcceeee-e-cCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHH
Q 013722          102 NSMRSSVG-V-VPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRL  177 (437)
Q Consensus       102 ~~~~r~v~-~-~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~  177 (437)
                      ..+.|.-. . ......+.+.|.+.||||++.++|..|..+|+||++....|  -.+.-.-.|...- .-..|.  ....
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa--~~~i  152 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPA--NLSI  152 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCC--cCcH
Confidence            12222211 1 34456788999999999999999999999999999998888  3345566776655 234444  3455


Q ss_pred             HHHHHHHhhhhccCC
Q 013722          178 LKIKKLLCNVLRTNG  192 (437)
Q Consensus       178 ~~l~~~L~~aL~g~~  192 (437)
                      ..|+++|++ |.++.
T Consensus       153 ~~l~~~f~a-l~~~L  166 (176)
T COG2716         153 SALRDAFEA-LCDEL  166 (176)
T ss_pred             HHHHHHHHH-HHHhh
Confidence            778888774 44444

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.28  E-value=4e-11  Score=129.98  Aligned_cols=144  Identities=17%  Similarity=0.099  Sum_probs=120.2

Q ss_pred             EEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc-cCcc
Q 013722           28 TVIQVDS-VNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL-NSMR  105 (437)
Q Consensus        28 ~~I~V~~-~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~-~~~~  105 (437)
                      -.++|.. +|++|+|.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+++.....+.++.++.+..+.. ..++
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            5777777 9999999999999999999999999999 78788999999999998877777777888887765432 2345


Q ss_pred             eeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          106 SSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       106 r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      +.+.+.     ++++|.+.||||+|+.|+++|.    +|.+|++.|.|..+.|.|++...        . ...+++.++.
T Consensus       626 ~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~--------~-~r~~~~~~~~  687 (693)
T PRK00227        626 ATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG--------F-DRATVERDVT  687 (693)
T ss_pred             ceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc--------c-cHHHHHHHHH
Confidence            554442     7999999999999999999999    89999999999999999999851        1 1266778888


Q ss_pred             hhhcc
Q 013722          186 NVLRT  190 (437)
Q Consensus       186 ~aL~g  190 (437)
                      .+|.+
T Consensus       688 ~~~~~  692 (693)
T PRK00227        688 RVLAG  692 (693)
T ss_pred             HHHhc
Confidence            77765

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.26  E-value=5.3e-11  Score=91.69  Aligned_cols=69  Identities=45%  Similarity=0.782  Sum_probs=63.6

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRT  394 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~  394 (437)
                      |.++|.++||||+|++|+++|.++|++|.++++.|.++.+.|.|++.+.+|.+.+.+..++|++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            579999999999999999999999999999999999899999999999999986666778899998774

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.25  E-value=4.1e-11  Score=129.88  Aligned_cols=135  Identities=15%  Similarity=0.128  Sum_probs=108.3

Q ss_pred             eEEEEEe-CCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh--hcc-C
Q 013722          248 TAVTIRS-KDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE--RRA-S  323 (437)
Q Consensus       248 t~V~V~~-~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~--~~~-~  323 (437)
                      -.++|.. +|++|++.++++.|+.++++|..|++.+ +|.++..|.|...-|.+.+.....+.++.++...+.  ... |
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            4677777 9999999999999999999999999999 888889999999999888776555555544433221  111 1


Q ss_pred             C----CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722          324 E----GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRT  394 (437)
Q Consensus       324 ~----~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~  394 (437)
                      +    ++++||++.||||+|++|+++|.    .|.+|+++|.|..++|.||++.       +..+.++.+++..+
T Consensus       626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~-------~~~r~~~~~~~~~~  689 (693)
T PRK00227        626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP-------GFDRATVERDVTRV  689 (693)
T ss_pred             ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC-------cccHHHHHHHHHHH
Confidence            1    58999999999999999999999    8999999999999999999972       12345566666554

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.14  E-value=3.8e-10  Score=86.82  Aligned_cols=70  Identities=39%  Similarity=0.557  Sum_probs=63.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      |.+.|.++|+||+|++|+++|+.+|++|.++++.|.++.+.+.|+++++ .+.+. +.++++++++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence            5789999999999999999999999999999999988899999999994 77775 6789999999998764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.02  E-value=1.3e-09  Score=96.79  Aligned_cols=129  Identities=16%  Similarity=0.142  Sum_probs=96.7

Q ss_pred             CCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCC-eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH-----
Q 013722          244 DRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRM-EAYQEYYIKHVDGFPISSEAERQRVMACLEAA-----  317 (437)
Q Consensus       244 ~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g-~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~-----  317 (437)
                      ...++.|+++++||||+...+++...+.|||+.+.|+...++ ++. ..   ...|    +|+...+|+.+|...     
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~-i~---lisg----s~dav~~le~~l~~l~~~~~   73 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAG-IM---LISG----SWDAVTLLEATLPLLGAELD   73 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeE-EE---EEee----CHHHHHHHHHHhhcccccCC
Confidence            346789999999999999999999999999999999988765 553 22   2233    266777877776542     


Q ss_pred             H----hhccC-------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCC
Q 013722          318 I----ERRAS-------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVD  380 (437)
Q Consensus       318 l----~~~~~-------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~  380 (437)
                      |    .+..+       ..+.++|.+.||||++.++|+.|.++||||++..-.|+.  ....-.|...-.-+-|.+
T Consensus        74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~  149 (176)
T COG2716          74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN  149 (176)
T ss_pred             eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc
Confidence            1    11111       257999999999999999999999999999999998873  233346776443344544

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.95  E-value=9.2e-09  Score=78.71  Aligned_cols=69  Identities=42%  Similarity=0.753  Sum_probs=61.3

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRT  394 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~  394 (437)
                      +.+.|.++|+||+|++|+.+|.++|++|.++++.|.+++..+.|++.+.++.+.++++++.+++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            368999999999999999999999999999999999889999999998887776556778888888663

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.82  E-value=4.1e-08  Score=75.04  Aligned_cols=70  Identities=34%  Similarity=0.581  Sum_probs=60.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      +.+.|.++|+||+|++|+++|+.+|++|.++++.+.++...+.|++..+ .+.+. ++++++.+++.|..++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence            3688999999999999999999999999999999976799999999985 55554 5678899999887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.67  E-value=2e-07  Score=73.29  Aligned_cols=67  Identities=21%  Similarity=0.389  Sum_probs=56.1

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      ..+|++.|+||||+++.++++|+++|+||.+.+..+.+++...++.|+-+        +...++|+++|.+....
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~~   68 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAEE   68 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999884        44668888888765443

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.67  E-value=8e-07  Score=74.03  Aligned_cols=125  Identities=15%  Similarity=0.085  Sum_probs=93.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH-HhhccCCCcE
Q 013722          249 AVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAA-IERRASEGLE  327 (437)
Q Consensus       249 ~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~-l~~~~~~~~~  327 (437)
                      +|+|+..++||-++.++..|...|+||....|.-++.+-+-.++|..++-.           ...|+++ +  -.....+
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A-----------~~~Lee~gF--~Vr~~dV   71 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEA-----------HSVLEEAGF--TVRETDV   71 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHH-----------HHHHHHCCc--EEEeeeE
Confidence            689999999999999999999999999999998888888888888776431           1223320 0  0011247


Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTM-GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTIL  396 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~  396 (437)
                      +-|+.+|+||=|..|+.+|.++++|+.++..-+. .++|.=+|.+          ++.++...+|+++..
T Consensus        72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~----------ed~d~~~~aLed~gi  131 (142)
T COG4747          72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV----------EDIDRAIKALEDAGI  131 (142)
T ss_pred             EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh----------hHHHHHHHHHHHcCC
Confidence            8899999999999999999999999999887443 4556544444          345666677776543

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.62  E-value=1.1e-06  Score=73.18  Aligned_cols=114  Identities=23%  Similarity=0.263  Sum_probs=88.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCccee
Q 013722           28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSS  107 (437)
Q Consensus        28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~r~  107 (437)
                      -+|+|+..|+||-|+..+..|.+.|+||..-.|.-.+.+.+-.+.|.++           ++-.++|.+.. +      .
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~g-F------~   65 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAG-F------T   65 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCC-c------E
Confidence            4799999999999999999999999999988887777766666666221           23455666642 1      1


Q ss_pred             eeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEe
Q 013722          108 VGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKD  164 (437)
Q Consensus       108 v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~  164 (437)
                      |.     ..-++.|...|+||-|+.|+++|.++++|+..+..++. ...+.-+|.+.+
T Consensus        66 Vr-----~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          66 VR-----ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             EE-----eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence            11     24578899999999999999999999999999999984 445555555544

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.56  E-value=7.7e-07  Score=69.97  Aligned_cols=64  Identities=20%  Similarity=0.251  Sum_probs=52.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722           27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN   97 (437)
Q Consensus        27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~   97 (437)
                      +..|++.++||||+++.++++|+++|+||.+.+..+.++.+.-.+.|.-+       ++..+.|+++|...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999998877878544       24567788887764

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.51  E-value=3.5e-07  Score=67.39  Aligned_cols=67  Identities=21%  Similarity=0.387  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722           28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN   97 (437)
Q Consensus        28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~   97 (437)
                      ++|+|.+||+.||-.++++++.+.|++|..+.++|+|.|++-+|+|...... +  .-+++.|++.|.+.
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999999999999754322 1  23667788888764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.40  E-value=8.5e-07  Score=69.45  Aligned_cols=66  Identities=23%  Similarity=0.218  Sum_probs=53.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      +++|.|+||||++++++++|+++|+||.+.+..+.++...-.|.+.-| .+.      ..+.|+++|......
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~~~   66 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKAHE   66 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHHHH
Confidence            378999999999999999999999999999988888888888888764 221      236677777755443

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.39  E-value=1.9e-06  Score=67.99  Aligned_cols=62  Identities=18%  Similarity=0.150  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722           28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVET   96 (437)
Q Consensus        28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~   96 (437)
                      ++|++.||||||+.+++++.|+++|+||.+.+.++.++++.-.+.+..+   +.    ..+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~----~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WD----AIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cc----cHHHHHHHHHH
Confidence            6899999999999999999999999999999999988887655555422   11    23456655554

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.33  E-value=2.7e-06  Score=64.02  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=35.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCc
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNA  154 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~  154 (437)
                      |.|.|.++||||+|++|+.+|+++|+||..+.+.+.++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~   38 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD   38 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence            57899999999999999999999999999999999665

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.32  E-value=4.1e-06  Score=63.02  Aligned_cols=63  Identities=24%  Similarity=0.350  Sum_probs=45.9

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      |.|.|..+||||+|++|+++|+++|+||.++...+.++.....|.+...     +....+++.++|.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV-----DEEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE-----EGHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC-----CCCCHHHHHHHHHc
Confidence            5789999999999999999999999999999999987743333333211     12344555555544

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.28  E-value=4.8e-06  Score=65.61  Aligned_cols=63  Identities=22%  Similarity=0.410  Sum_probs=50.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV  187 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a  187 (437)
                      .++++.|+||||+++.|+++|+++|+||.+.+.++.+++..-...+..+  .      ...+.|++.|...
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~------~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--W------DAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--c------ccHHHHHHHHHHH
Confidence            5799999999999999999999999999999999988887666666652  1      1246777777753

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.25  E-value=4.4e-06  Score=65.41  Aligned_cols=50  Identities=20%  Similarity=0.231  Sum_probs=44.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCC
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG  376 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g  376 (437)
                      +++|.++||||++++|+++|+++|+||...+-++++++-.-.|.+.-+.+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~   50 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS   50 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence            47899999999999999999999999999999999888777888865443

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=98.15  E-value=0.0021  Score=69.84  Aligned_cols=283  Identities=14%  Similarity=0.160  Sum_probs=157.8

Q ss_pred             eCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCcceeeeecC
Q 013722           34 SVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVP  112 (437)
Q Consensus        34 ~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~r~v~~~~  112 (437)
                      .++.+|+++++...|+++|+||..-..+. ..+..--.|.|...+-     +...+.|+ .|......     -.+  ..
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~-~l~~~~~~-----~~i--~~  344 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAE-AIAPALGG-----AEV--LV  344 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHH-HHHHHcCC-----CcE--EE
Confidence            57899999999999999999999665443 2332223466632111     11112222 22211110     011  12


Q ss_pred             CCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722          113 SKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR  189 (437)
Q Consensus       113 ~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~  189 (437)
                      ..+...|+|.+.   ++||+++++..+|++.|++|....  +   .-..+..+-+         +...++..+.|++.+.
T Consensus       345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s---Se~~Is~vv~---------~~d~~~av~~Lh~~f~  410 (587)
T PRK07431        345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T---SEVKVSCVID---------AEDGDKALRAVCEAFE  410 (587)
T ss_pred             eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c---CCCEEEEEEc---------HHHHHHHHHHHHHHhc
Confidence            235778888885   789999999999999999997665  2   2223323332         1223445555666554


Q ss_pred             cCCCCCCCCcccccccccccchhhhhhhhcccccccccccCCCCCcEEEEEecCCCCeeEEEEE-eCCCCchHHHHHHHH
Q 013722          190 TNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIR-SKDRPKLLFDTVCCL  268 (437)
Q Consensus       190 g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~t~V~V~-~~DrpgL~~~v~~~L  268 (437)
                      -+..-                ..+.+++  .+ .+        ..+.--+..  ..+...|++. .++.+|.++++...|
T Consensus       411 ~~~~~----------------~~~~~~~--~~-~~--------~~~v~gIa~--~~~~~~i~l~~~~~~~g~~a~if~~l  461 (587)
T PRK07431        411 LEDSQ----------------IEINPTA--SG-QD--------EPEVRGVAL--DRNQAQLAIRNVPDRPGMAASIFGAL  461 (587)
T ss_pred             cCCcc----------------cccCccc--cC-CC--------CCcEEEEEc--cCCEEEEEECCCCCCccHHHHHHHHH
Confidence            43210                0111110  00 00        111112221  2233344443 678899999999999


Q ss_pred             HhCCCeEEEEEEEec-C--CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhccC--------CCcEEEEEeC---C
Q 013722          269 TDMQYVVYHGTVVTG-R--MEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRAS--------EGLELELYTD---D  334 (437)
Q Consensus       269 ~~~~lnI~~a~i~t~-~--g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~--------~~~~iev~~~---D  334 (437)
                      ++.++||..-..... +  |..--.|.+...         ......+.+++ +.+..+        .-..|.|.+.   .
T Consensus       462 ~~~~i~id~i~~~~~~~~~~~~~isf~v~~~---------~~~~~~~~l~~-l~~~~~~~~i~~~~~va~VSvVG~gm~~  531 (587)
T PRK07431        462 AEANISVDMIVQSQRCRSDGTRDISFTVPKE---------DREAAQKVLRE-LAKQLPGAEVEDGPAIAKVSIVGAGMPG  531 (587)
T ss_pred             HHcCCeEEEEEecCCCCCCCceeEEEEEcHH---------HHHHHHHHHHH-HHHhcCCceEEEeCCeEEEEEECCCccC
Confidence            999999998755322 1  222233554442         22222222222 222222        2357888885   7


Q ss_pred             CcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEE-EEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722          335 RFGLLSDITRILREYGLCIRRAEISTMGRKVKDT-FFVTDASGNPVDPKIVDSIQHQIGRTI  395 (437)
Q Consensus       335 rpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~-F~v~d~~g~~l~~~~~~~l~~~L~~~~  395 (437)
                      +||+++++.++|.+.||++....  |   .-..+ |.|.        .++.++.-+.|++.+
T Consensus       532 ~~gv~~ri~~aL~~~~I~v~~i~--~---S~~~Is~vV~--------~~~~~~av~~Lh~~f  580 (587)
T PRK07431        532 TPGVAARMFRALADAGINIEMIA--T---SEIRTSCVVA--------EDDGVKALQAVHQAF  580 (587)
T ss_pred             CcCHHHHHHHHHHHCCCcEEEee--c---cceEEEEEEe--------HHHHHHHHHHHHHHh
Confidence            89999999999999999997655  2   22333 5443        234455556666543

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.07  E-value=9.5e-06  Score=65.51  Aligned_cols=68  Identities=16%  Similarity=0.279  Sum_probs=53.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      .++++.|+||||++++|+++|+++|+||.+.+..+.++...-.+.+.-|  +...    ..+.|+++|......
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~l~~~   69 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEELGKE   69 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999988777777777763  2111    236777777764433

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=97.98  E-value=1.9e-05  Score=63.86  Aligned_cols=66  Identities=20%  Similarity=0.309  Sum_probs=51.0

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV  187 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a  187 (437)
                      .+++++.++||||++++|+++|+++|+||.+....+.++.+.-.+.+.-+  +.+. +   .+.|++.|.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~l   68 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEEL   68 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHHH
Confidence            67899999999999999999999999999999988877766665555543  2122 2   36677776653

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.98  E-value=2.9e-05  Score=61.26  Aligned_cols=64  Identities=22%  Similarity=0.295  Sum_probs=47.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC------ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN------ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~------~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      ++++.++|+||++++|+++|+++|+||.+.+..+.+      +...-.+.+.-| .+  .    ....++++|....
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~l~   70 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEELC   70 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHHHH
Confidence            478999999999999999999999999999999865      334444444443 11  1    2467777777543

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.95  E-value=2.5e-05  Score=63.06  Aligned_cols=49  Identities=29%  Similarity=0.308  Sum_probs=42.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeC
Q 013722           28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDI   76 (437)
Q Consensus        28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~   76 (437)
                      ..|++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~   50 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS   50 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence            5789999999999999999999999999999999888777666666544

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.89  E-value=4.2e-05  Score=56.59  Aligned_cols=68  Identities=15%  Similarity=0.203  Sum_probs=59.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      ++|+|.++|+.||=.++++++.+.|++|..+.+.|.|.-.--+|+|...  ..++  +-+|..|++.|.++.
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~C   68 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSAC   68 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhcC
Confidence            4799999999999999999999999999999999999999999999873  2333  568999999988764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.89  E-value=7.6e-05  Score=58.07  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=32.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE
Q 013722           29 VIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS   62 (437)
Q Consensus        29 ~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t   62 (437)
                      +|+|.|+||||++++++++|+++|+||.+.+..+
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~   34 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV   34 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence            4789999999999999999999999999999986

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=97.88  E-value=5.3e-05  Score=61.30  Aligned_cols=48  Identities=25%  Similarity=0.363  Sum_probs=42.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEE
Q 013722           27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT   74 (437)
Q Consensus        27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~   74 (437)
                      .+.|+|.++|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~   50 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence            579999999999999999999999999999999988888776655554

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.87  E-value=7.1e-05  Score=58.24  Aligned_cols=67  Identities=15%  Similarity=0.223  Sum_probs=44.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      +|++.|+||||++++|+++|+++|+||.+.+..+..+.  ..|++.-. -..+. .+...+.|+++|....
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~--~~f~~~~~-~~~~~-~~~~~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDS--GRFFMRVE-FELEG-FDLSREALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCC--CeEEEEEE-EEeCC-CCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999873222  12443321 11111 0012477777776543

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.85  E-value=9.5e-05  Score=58.32  Aligned_cols=48  Identities=25%  Similarity=0.247  Sum_probs=39.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeC------CEEEEEEEEEeC
Q 013722           29 VIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDG------GYLMDVFYVTDI   76 (437)
Q Consensus        29 ~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~------g~~~d~F~V~~~   76 (437)
                      .|+|.++|+||++++++++|+++|+||.+.+..+.+      +.+.-.+.+.-+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p   54 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP   54 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence            378999999999999999999999999999998865      555545555434

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.85  E-value=0.00015  Score=57.13  Aligned_cols=64  Identities=25%  Similarity=0.389  Sum_probs=51.4

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      ..+.|.|.+.||||+|++|+.+++..|+||.++.+.+.  ++.+.-.|.+.-.       +.+++..+-+.|+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999983  6778888877763       5667777777665

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.78  E-value=0.00082  Score=66.05  Aligned_cols=113  Identities=11%  Similarity=0.075  Sum_probs=67.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh-ccCcccCcc
Q 013722           29 VIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD--GGYLMDVFYVTDINGQKIGDQATISYIKTTVET-NASFLNSMR  105 (437)
Q Consensus        29 ~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~-~~~~~~~~~  105 (437)
                      +|+|.|+||||+.+.++++|+++|+||.+.+.+..  +|++.-.+.+..+ +...+    .+.|+++|.. ... ...+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~----~~~l~~~l~~~~~~-~~~l~   75 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLE----ESSLLAAFKSALAE-KFEMT   75 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCC----HHHHHHHHHHHHHH-HhCCE
Confidence            68999999999999999999999999999999884  4766655555333 22222    2455555544 211 00111


Q ss_pred             eeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEE
Q 013722          106 SSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEI  149 (437)
Q Consensus       106 r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i  149 (437)
                      .++....  ....|-|.+.-+-.-|..|......-.++..=+-+
T Consensus        76 i~l~~~~--~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v  117 (280)
T TIGR00655        76 WELILAD--KLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV  117 (280)
T ss_pred             EEEecCC--CCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence            1222111  22344444555556666777766665555443333

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.75  E-value=0.0007  Score=66.82  Aligned_cols=118  Identities=10%  Similarity=0.046  Sum_probs=66.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE--EeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccC
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS--SDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNS  103 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~--t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  103 (437)
                      ...+|+|.|+||||+.+.++++|+++|+||.+.+.+  +..+.++-.+.+.+.....++    .+.|+++|.+...- ..
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~----~~~l~~~l~~l~~~-l~   82 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAAS----VDTFRQEFQPVAEK-FD   82 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCC----HHHHHHHHHHHHHH-hC
Confidence            456899999999999999999999999999999997  333433323333222111121    34555555443210 01


Q ss_pred             cceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722          104 MRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW  150 (437)
Q Consensus       104 ~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~  150 (437)
                      ..-++.+..  ....|-|.+.-+..-|..|..+...-.++..=+-+-
T Consensus        83 l~~~i~~~~--~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vi  127 (289)
T PRK13010         83 MQWAIHPDG--QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGII  127 (289)
T ss_pred             CeEEEecCC--CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEE
Confidence            111222222  223444444445556666666666655554433333

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.63  E-value=0.0014  Score=64.59  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=50.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS--DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN   97 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~   97 (437)
                      ....|+|.|+||||+.+.++++|+++|+||.+.+.++  .+|.+.-.+.+.- +..+.    ..+.|+++|...
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l   73 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAAL   73 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHH
Confidence            5689999999999999999999999999999999998  7776554455532 11111    145666666554

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.63  E-value=0.0004  Score=54.77  Aligned_cols=63  Identities=29%  Similarity=0.415  Sum_probs=49.3

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      +.|+|.+.||||+|++|++++.+.|+||.+..+.+.  ++.+.-.|.|.-.     +.++++.+-+.|.+
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence            579999999999999999999999999999999995  5677777777432     23567777777776

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.58  E-value=9.9e-05  Score=59.10  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=54.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      ..+|+|.|.||||+.+.|+++|+++|+||++..-+-..+...-.+.|.-+  .    +......++++|.+....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~----~~~d~~~lr~~l~~~~~~   71 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--K----EVVDFAALRDELAAEGKK   71 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--h----HhccHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999998877777888777877663  1    123346777777765554

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.57  E-value=0.00072  Score=52.19  Aligned_cols=60  Identities=13%  Similarity=0.246  Sum_probs=47.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      +.|.+.||||+|++|+.+++..|+||.+....+. .+.+...|.+.-+       +.++++.+.+.|+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHh
Confidence            6789999999999999999999999999888764 4666666666653       4566677666655

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.49  E-value=0.0026  Score=62.70  Aligned_cols=115  Identities=11%  Similarity=0.031  Sum_probs=66.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccC
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS--DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNS  103 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  103 (437)
                      ....|+|.|+||||+.++++++|+++|+||.+.+..+  .++.+.-.+.+..+.+..      .+.|+++|.....- ..
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~------~~~L~~~L~~l~~~-l~   78 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLD------EDALRAGFAPIAAR-FG   78 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCC------HHHHHHHHHHHHHH-hC
Confidence            3568999999999999999999999999999999985  345554455554343321      34566555543210 00


Q ss_pred             cceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEE
Q 013722          104 MRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEI  149 (437)
Q Consensus       104 ~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i  149 (437)
                      ....+.+...  ...|.|.+.-+---|..+..+.....++..=+-+
T Consensus        79 l~i~i~~~~~--~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v  122 (286)
T PRK13011         79 MQWELHDPAA--RPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV  122 (286)
T ss_pred             cEEEEeeccc--CceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence            1111111111  1234444444555566666666555554443333

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.42  E-value=0.00052  Score=67.72  Aligned_cols=69  Identities=19%  Similarity=0.303  Sum_probs=51.5

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR  189 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~  189 (437)
                      ..++++|.|+||||+++.|+++|+++|+||.+.+.++  .++...-.+.+.-  ...    +...+.|+++|.+...
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~----~~~~~~L~~~L~~l~~   75 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGL----IFNLETLRADFAALAE   75 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCC----CCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999998  6665444444443  111    1225778877774443

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.39  E-value=0.0017  Score=50.03  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=47.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTM-GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      |.|.+.||||+|++|+.++++.|+||......+. .+.+...|.+.-.     +.++++.+.+.|.+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence            7899999999999999999999999999888775 3566666766422     23566677777665

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.35  E-value=0.00029  Score=56.48  Aligned_cols=47  Identities=23%  Similarity=0.316  Sum_probs=40.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEE
Q 013722           27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV   73 (437)
Q Consensus        27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V   73 (437)
                      ...|+|.++||||+.+.++++|+++|.||++-+.+--+|++--.+.|
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV   49 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV   49 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE
Confidence            46899999999999999999999999999987777677877655656

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.21  E-value=0.0031  Score=47.69  Aligned_cols=60  Identities=17%  Similarity=0.268  Sum_probs=42.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-----CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-----NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      +.|..+|+||+|++|+.+++.+|+||.+......     .+...-.|.+...       +.++++.+.+.|.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~   65 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALR   65 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence            3578899999999999999999999998886653     2334444444431       3455566665554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.21  E-value=0.0061  Score=60.20  Aligned_cols=106  Identities=9%  Similarity=0.021  Sum_probs=64.3

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEe--cC-CeEEEEEEE-EccCCCCCCcHHHHHHHHHHHHHHHh---
Q 013722          247 YTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVT--GR-MEAYQEYYI-KHVDGFPISSEAERQRVMACLEAAIE---  319 (437)
Q Consensus       247 ~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t--~~-g~ald~F~V-~~~~g~~~~~~~~~~~l~~~L~~~l~---  319 (437)
                      ...|+|.||||||+.+.++..|+++|+||.+.+.++  .. .|..-..++ ..+.+  .    ..+.|++.|.+.-+   
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~--~----~~~~l~~~l~~l~~~l~   82 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEA--A----SVDTFRQEFQPVAEKFD   82 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCC--C----CHHHHHHHHHHHHHHhC
Confidence            457999999999999999999999999999999974  22 333211111 11222  2    24455555554321   


Q ss_pred             -----hccCCCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722          320 -----RRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEI  358 (437)
Q Consensus       320 -----~~~~~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I  358 (437)
                           +...+...|-|.+--+.--|.+|-.+...-.++.+-+-+
T Consensus        83 l~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~v  126 (289)
T PRK13010         83 MQWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGI  126 (289)
T ss_pred             CeEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEE
Confidence                 111233455555555555677777777666665444333

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.21  E-value=0.0017  Score=64.11  Aligned_cols=69  Identities=10%  Similarity=0.217  Sum_probs=49.9

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      ..+.++|.|+||||++++||++|+++|+||.+....+  .++...-.+.+..| .+.      ....|+++|.+....
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~------~~~~L~~~L~~l~~~   76 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGL------DEDALRAGFAPIAAR   76 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCC------CHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999875  33344444444432 121      247777887764443

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.15  E-value=0.0039  Score=48.93  Aligned_cols=64  Identities=9%  Similarity=0.120  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV  187 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a  187 (437)
                      ..+++...|+||+|++|+++|+..|.||.+..+.- ......-+..+...       ++...+++...|.+.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-------~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-------TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-------CHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999998873 33333333333231       355667777777654

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.15  E-value=0.0027  Score=49.33  Aligned_cols=59  Identities=20%  Similarity=0.364  Sum_probs=44.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      .++|.+.||+|+|++|+.++++.|+||.+..+.+. +.  -.|.+.-     .+.++++.+.++|.+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-----~~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-----IEFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-----cCHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999775 22  2232321     123566777777766

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.14  E-value=0.00066  Score=52.28  Aligned_cols=66  Identities=21%  Similarity=0.327  Sum_probs=48.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEE--EEEEcCCCCCCC-hHHHHHHHHHHhh
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDT--FFVTDASGNPVD-PKIVDSIQHQIGR  393 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~--F~v~d~~g~~l~-~~~~~~l~~~L~~  393 (437)
                      .+|+++..||-++||+|-+|+.+|+.|++|.|...  +++-+.+  |.+.+. ++.++ .....++...+..
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~   72 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTK   72 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHH
Confidence            47999999999999999999999999999999753  6677665  444443 44454 3445555555444

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.14  E-value=0.0033  Score=47.61  Aligned_cols=44  Identities=25%  Similarity=0.425  Sum_probs=37.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      .+.|..+|+||.|++|+++|.++|+||.+..+.+.+++  -+|.+.
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            57889999999999999999999999999998776664  455553

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.12  E-value=0.015  Score=57.27  Aligned_cols=104  Identities=12%  Similarity=0.051  Sum_probs=67.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecC--C-eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-----
Q 013722          249 AVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGR--M-EAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER-----  320 (437)
Q Consensus       249 ~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~--g-~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-----  320 (437)
                      .|+|.||||||+.+.+++.|++.|+||.+.+.+...  | |.+ .+.+..++ ...    ..+.|++.|++++.+     
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~m-r~~v~~~~-~~~----~~~~l~~~l~~~~~~~~~l~   75 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFM-RVEFQLEG-FRL----EESSLLAAFKSALAEKFEMT   75 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEE-EEEEEeCC-CCC----CHHHHHHHHHHHHHHHhCCE
Confidence            589999999999999999999999999999998853  4 332 33344332 122    245566655552211     


Q ss_pred             ----ccCCCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722          321 ----RASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEI  358 (437)
Q Consensus       321 ----~~~~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I  358 (437)
                          ...+...|-|-+--+---|.+|-.....-.++.+-+-+
T Consensus        76 i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v  117 (280)
T TIGR00655        76 WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV  117 (280)
T ss_pred             EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence                11233455555556666777787777776665444333

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.10  E-value=0.0017  Score=47.37  Aligned_cols=46  Identities=24%  Similarity=0.401  Sum_probs=39.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEc
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTD  373 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d  373 (437)
                      ++|...|+||.|.+++..|.++|+||.+..+.+.+ +++.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999987765 77777777754

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.07  E-value=0.0046  Score=47.02  Aligned_cols=62  Identities=16%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI  395 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~  395 (437)
                      .+.|..+|+||.|+++++.|+++|+||.+.......  ....-.|.+.+       +...+++.+.|.+.-
T Consensus         3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~~~~~~L~~~G   66 (69)
T cd04909           3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT-------QEDRERAKEILKEAG   66 (69)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC-------HHHHHHHHHHHHHcC
Confidence            578899999999999999999999999988776652  23344565542       124567777776643

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.07  E-value=0.0044  Score=46.92  Aligned_cols=46  Identities=15%  Similarity=0.286  Sum_probs=38.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD  164 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~  164 (437)
                      ..++|..+|+||.|++|+.+|+++|+||.+..+...++.  .++.+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence            367889999999999999999999999999998775553  5555544

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.05  E-value=0.0045  Score=48.07  Aligned_cols=58  Identities=22%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      .+.|.+.||+|+|++|+.+++..|+||.+.++.+. +.  -.|.+.-       .+.+++..+.+.|+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-------~~~~~L~~li~~L~   59 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-------IEFEKLQTLMPEIR   59 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-------cCHHHHHHHHHHHh
Confidence            47899999999999999999999999999999775 33  2233332       14556666665554

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.04  E-value=0.0051  Score=47.49  Aligned_cols=61  Identities=18%  Similarity=0.279  Sum_probs=46.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEeCCCCCcCCCHH-HHHHHHHHHh
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKDQSSGCAIEDQK-RLLKIKKLLC  185 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~-~~~~l~~~L~  185 (437)
                      .+.|.+.|+||+|++|+.+++++|+||......+. ++.+.-.|.+...       +.+ +++.+.+.|+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHh
Confidence            57899999999999999999999999999887553 3556666666542       233 5666666655

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.003  Score=60.43  Aligned_cols=66  Identities=14%  Similarity=0.214  Sum_probs=47.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD--GGYLMDVFYVTDINGQKIGDQATISYIKTTVET   96 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~   96 (437)
                      ...++++.|||++|+.+.|++.|+++||||.++..+++  .|+++-.-.. ...+.+.    ..+.+++++..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f-~~~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEF-EGEGGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEE-ecCCCcc----cHHHHHHHHHH
Confidence            46799999999999999999999999999999999972  4655433222 2233332    23556666655

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.02  E-value=0.0048  Score=50.40  Aligned_cols=67  Identities=16%  Similarity=0.279  Sum_probs=47.6

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR  189 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~  189 (437)
                      ....|++...|+||+|++|++.|+..|.||.+..+.- ......-+..+..        ++..++++...|.+...
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--------~~~~i~Qi~kQL~KLid   74 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--------DDQRLEQMISQIEKLED   74 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--------CchHHHHHHHHHhCCcC
Confidence            4567999999999999999999999999999998864 3322222222222        12466777777775443

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.01  E-value=0.0064  Score=45.76  Aligned_cols=61  Identities=18%  Similarity=0.359  Sum_probs=45.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-C-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTM-G-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      .+.+.+.|+||+|++|+.+|+++|++|.+....+. + +.+.=.|.+..     .+ ++.+.+.+.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHhC
Confidence            57889999999999999999999999999998775 3 34443444432     13 556677777765

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.00  E-value=0.0066  Score=45.83  Aligned_cols=62  Identities=16%  Similarity=0.192  Sum_probs=42.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-----CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-----RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRT  394 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-----~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~  394 (437)
                      +.|..+|+||+|++|+++|.++|+||.+.......     +.+.-.|.+...     +.++.+.+.+.|.+.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHHc
Confidence            46788999999999999999999999987765432     333333444221     234556777777664

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.99  E-value=0.0059  Score=46.86  Aligned_cols=62  Identities=21%  Similarity=0.259  Sum_probs=45.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      .+.|.+.|+||+|.+|+++|.++|++|.+....+..  +.+.=.|.+ .    ..+.++.+++.+.|.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~-~----~~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT-H----ETSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE-c----cCCHHHHHHHHHHHHc
Confidence            578999999999999999999999999999876653  444433333 2    2244566666666665

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.99  E-value=0.0044  Score=56.50  Aligned_cols=66  Identities=12%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      ..+.|.+.|+||+|++|+++|+.+|+||.+..+..  ..+...-++.+..        ++...++|.++|.+...-
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLidV   70 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVNI   70 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhHh
Confidence            47899999999999999999999999999999975  3333333333322        233367788887765543

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.95  E-value=0.0069  Score=46.00  Aligned_cols=47  Identities=23%  Similarity=0.354  Sum_probs=36.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-c-eeEEEEEEE
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-A-RAAALLHVK  163 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~-~~~d~F~V~  163 (437)
                      +.+.+..+|+||.|+++++.|+++|+||.+....... + ...-.+.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4688899999999999999999999999988876642 2 333344444

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.93  E-value=0.0029  Score=46.17  Aligned_cols=46  Identities=20%  Similarity=0.299  Sum_probs=38.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEe
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKD  164 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~  164 (437)
                      +.+..+|+||.|++++..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            35788999999999999999999999999988754 66776776655

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.92  E-value=0.0052  Score=48.20  Aligned_cols=67  Identities=12%  Similarity=0.148  Sum_probs=48.8

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCC--eEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGR--KVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK  399 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~--~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~  399 (437)
                      +.|.+...|+||+|++|+.+|...|.||.+..+.-..+  -..-++.+.   |   ++...++|..+|.+ +.+|.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~---~~~~i~qi~kQL~K-LidV~   71 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---C---TENEATLLVSQLKK-LINVL   71 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---C---CHHHHHHHHHHHhC-CcCEE
Confidence            47899999999999999999999999999988763322  222233332   1   24567888888888 55554

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.91  E-value=0.0065  Score=47.86  Aligned_cols=66  Identities=17%  Similarity=0.285  Sum_probs=45.4

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCC-eEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGR-KVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~-~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      +.+.+..+|+||.|++|...|+++|+||.+-.....++ ...=.|+|. .+|. ...+..+.+-..|.+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd-~~~~-~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID-FEGH-IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE-EECC-CCCHHHHHHHHHHHH
Confidence            35778889999999999999999999999987766654 333467774 3344 333333444444444

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.90  E-value=0.0069  Score=48.26  Aligned_cols=65  Identities=15%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEE-EEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAA-LLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d-~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      ..+++...|+||.|++|+++|+..|+||.+..+.. ......- ++.+...       |+..++++...|.+..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~-------d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ-------DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC-------CHHHHHHHHHHHhCCc
Confidence            46889999999999999999999999999999875 3333333 3333211       4566677877777543

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.82  E-value=0.006  Score=49.85  Aligned_cols=69  Identities=14%  Similarity=0.215  Sum_probs=51.3

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK  399 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~  399 (437)
                      ..+|.+...|+||+|++|+..|+..|.||.+..+.-.+..-.-.+.++-.     ++...+++..+|.+ +.+|.
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-----~~~~i~Qi~kQL~K-LidVi   76 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-----DDQRLEQMISQIEK-LEDVL   76 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-----CchHHHHHHHHHhC-CcCEE
Confidence            46899999999999999999999999999998886554433333443321     13577888888888 44444

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.79  E-value=0.012  Score=44.18  Aligned_cols=60  Identities=17%  Similarity=0.283  Sum_probs=44.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-C-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-N-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      .+.+.+.|+||+|++|+.+|+.+|++|.+....+. + +.+.-.|.+..+       + ..++.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-------D-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-------H-HHHHHHHHHHh
Confidence            47788999999999999999999999999998764 3 334444444331       3 45566666665

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.79  E-value=0.013  Score=45.23  Aligned_cols=62  Identities=13%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-CCeEEEEEEEEcCCCCCCChH-HHHHHHHHHhh
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTM-GRKVKDTFFVTDASGNPVDPK-IVDSIQHQIGR  393 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g~~a~D~F~v~d~~g~~l~~~-~~~~l~~~L~~  393 (437)
                      .+.|.+.||||+|++|+++++++|+||......+. ++.+.=.|.+...     +.+ ..+.+.++|.+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-----TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-----chHHHHHHHHHHHhc
Confidence            58899999999999999999999999999877554 3555556766431     123 56777777776

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.77  E-value=0.0082  Score=53.85  Aligned_cols=66  Identities=21%  Similarity=0.415  Sum_probs=50.4

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV  398 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~  398 (437)
                      .++.|...|+||.|++|+..|+++|+||.+.-+...+  +...-+|.|.   |   ++...++|..+|.+ +.+|
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~---d~~~i~qi~kQl~K-li~V   69 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G---DDKVLEQITKQLNK-LVDV   69 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhc-CccE
Confidence            4789999999999999999999999999998876654  2333344442   2   34677889999998 4433

acetohydroxyacid synthase is a synonym.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.76  E-value=0.0078  Score=47.23  Aligned_cols=66  Identities=15%  Similarity=0.310  Sum_probs=51.3

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK  399 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~  399 (437)
                      +.+++...|+||.|++|+.+|...|.||.+-.+.-  .++...-++.+.       ++...++|..+|.+ +.+|.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-------~~~~i~ql~kQL~K-L~dV~   71 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-------SERPIDLLSSQLNK-LVDVA   71 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-------CCchHHHHHHHHhc-CcCeE
Confidence            47899999999999999999999999999988875  455566566652       13456778888887 55554

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.76  E-value=0.0069  Score=48.27  Aligned_cols=64  Identities=13%  Similarity=0.120  Sum_probs=47.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      .+.+...|+||+|++|+..|...|.||.+..+...-+.-.-.+.++-..|   ++...+++..+|.+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~K   67 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhC
Confidence            78899999999999999999999999999988755433333333322111   23566888888888

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.75  E-value=0.0088  Score=44.77  Aligned_cols=44  Identities=20%  Similarity=0.226  Sum_probs=38.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEE
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFV  371 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v  371 (437)
                      +.|.+.|+||+|++|+++|.++|+||.+..+...+  +.+.-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999987764  566556666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.73  E-value=0.007  Score=55.18  Aligned_cols=62  Identities=16%  Similarity=0.325  Sum_probs=45.8

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      ..+.|.+.|+||+|++|+.+|+++|+||.+..+.+  ..+-.  .+.++-+ +   ++...++|..+|.+
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~-~---~~~~ieqL~kQL~K   66 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVP-G---DDRTIEQLTKQLYK   66 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEE-C---CHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999966  33334  3434322 1   12236777777777

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.71  E-value=0.011  Score=45.22  Aligned_cols=61  Identities=18%  Similarity=0.275  Sum_probs=43.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      .+.+.+.|+||+|++|+.+|+++|+||.+....+..  +.+.-.+.+...       +..+++.+.+.|.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~-------~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET-------SEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC-------CHHHHHHHHHHHH
Confidence            578889999999999999999999999999876532  334333333321       4555555555554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.68  E-value=0.014  Score=52.44  Aligned_cols=65  Identities=22%  Similarity=0.281  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR  189 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~  189 (437)
                      ..++|...|+||.|++|+++|+.+|+||.+..+...+  +...-++.|..        ++...+++...|.+...
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli~   68 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLVD   68 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCcc
Confidence            4688999999999999999999999999999887643  33333444432        35567888888775543

acetohydroxyacid synthase is a synonym.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.65  E-value=0.0047  Score=59.15  Aligned_cols=66  Identities=12%  Similarity=0.356  Sum_probs=47.5

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeC--CCCCcCCCHHHHHHHHHHHhh
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQ--SSGCAIEDQKRLLKIKKLLCN  186 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~--~~g~~~~~~~~~~~l~~~L~~  186 (437)
                      ..+++++.|+|+||+.+.|++.|+.+|+||..+.-++.  .....|+..-.  ..+.+    ...+.|++++..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D--~~~g~FFmR~~f~~~~~~----~~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDD--PETGRFFMRVEFEGEGGP----LDREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccc--cccCeEEEEEEEecCCCc----ccHHHHHHHHHH
Confidence            56899999999999999999999999999999998852  33344443331  12332    234667777665

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.57  E-value=0.018  Score=51.89  Aligned_cols=65  Identities=15%  Similarity=0.285  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR  189 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~  189 (437)
                      ..++|...|+||.|++|+++|+.+|+||.+..+....  +...-++.|..        ++..++++...|.+...
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLid   69 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLID   69 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcccc
Confidence            4789999999999999999999999999999876533  33334444432        35567788878775544

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.54  E-value=0.016  Score=43.48  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=35.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEE
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFV  371 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v  371 (437)
                      +.+.+.|+||.|++|++.|.++|++|.+......  ++.+.-.|.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            6789999999999999999999999999887653  3444434444

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.54  E-value=0.013  Score=52.87  Aligned_cols=67  Identities=18%  Similarity=0.393  Sum_probs=50.1

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK  399 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~  399 (437)
                      ..++|...|+||.|++|+..|+++|+||.+.-+....  +...-+|.+.   |   ++...+++..+|.+ +.+|.
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~---~~~~i~qi~kQl~K-LidV~   71 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---G---DEQVIEQITKQLNK-LIDVL   71 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhc-cccEE
Confidence            4789999999999999999999999999998775543  3333344442   1   34677889999988 44443

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.54  E-value=0.012  Score=43.82  Aligned_cols=36  Identities=28%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG  362 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g  362 (437)
                      ++.|..+|+||-|++++.+|.++|+||.+......+
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            467889999999999999999999999888764443

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.38  E-value=0.023  Score=44.58  Aligned_cols=63  Identities=19%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCcee-EEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARA-AALLHVKDQSSGCAIEDQKRLLKIKKLLCNV  187 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~-~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a  187 (437)
                      .+.+++...|+||.|++|+++|+..|.||.+..+.- .++.. .-++.| .  +      +..++.+.+.|.+.
T Consensus         3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~--~------~~~i~ql~kQL~KL   67 (76)
T PRK11152          3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A--S------ERPIDLLSSQLNKL   67 (76)
T ss_pred             eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C--C------CchHHHHHHHHhcC
Confidence            357899999999999999999999999999999875 33333 333344 2  1      23346677776643

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.34  E-value=0.017  Score=44.02  Aligned_cols=45  Identities=24%  Similarity=0.348  Sum_probs=36.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEE
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVT  372 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~  372 (437)
                      +-+...|+||.+++|++.|+++|+||.+.....  .++.+.=+|.+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            456889999999999999999999999887755  356666566663

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.33  E-value=0.005  Score=46.59  Aligned_cols=45  Identities=20%  Similarity=0.166  Sum_probs=36.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      +-+.+.|+||+|++|+.+|.++|+||.+....+.++.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence            456899999999999999999999998887766556666566553

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.31  E-value=0.028  Score=42.26  Aligned_cols=46  Identities=13%  Similarity=0.462  Sum_probs=36.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEE
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVK  163 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~  163 (437)
                      ++.+.++|+||.|++|+..|++++++|.+....+. ++.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            57889999999999999999999999998887764 33443334443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.27  E-value=0.032  Score=41.38  Aligned_cols=33  Identities=12%  Similarity=0.137  Sum_probs=29.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          250 VTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVT  282 (437)
Q Consensus       250 V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t  282 (437)
                      +.|..+|+||.+++++..|.++|+||.+.....
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~   34 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFV   34 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEc
Confidence            578899999999999999999999998776544

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.26  E-value=0.013  Score=43.79  Aligned_cols=44  Identities=18%  Similarity=0.372  Sum_probs=37.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEE
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHV  162 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V  162 (437)
                      +.|.+.|+||++++|+.+|+++|+||.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            57889999999999999999999999999988743  556566666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.25  E-value=0.049  Score=42.81  Aligned_cols=48  Identities=21%  Similarity=0.245  Sum_probs=39.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEe
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKD  164 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~  164 (437)
                      +.+.+..+|+||.|++|...|+++|+||.+...... .+...-.|+|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            456777899999999999999999999999987764 334556777766

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.19  E-value=0.049  Score=39.70  Aligned_cols=60  Identities=27%  Similarity=0.463  Sum_probs=42.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      +.+.+.|+||.+.+|+..|.+++++|.+..+...+ +...-.|.+..+       +...+..+.+.|.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~   61 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-------DLEHLARIMRKLR   61 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            46778999999999999999999999999887654 334444445442       2444555555544

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.17  E-value=0.039  Score=42.36  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH  152 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~  152 (437)
                      +++..+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5778899999999999999999999998876553

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.17  E-value=0.055  Score=47.27  Aligned_cols=53  Identities=26%  Similarity=0.453  Sum_probs=41.8

Q ss_pred             CCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEEe
Q 013722          112 PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVKD  164 (437)
Q Consensus       112 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~~  164 (437)
                      +....+.+.|.+.|+||+|++|+.+|+++++||.+....+.  ++.+.-.|.+.-
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev  106 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL  106 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe
Confidence            44458899999999999999999999999999999988763  343444444443

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.09  E-value=0.053  Score=40.75  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=31.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTM  361 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~  361 (437)
                      .+.+...|+||.|++|++.|.+++++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            57889999999999999999999999998887665

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.06  E-value=0.037  Score=42.49  Aligned_cols=62  Identities=15%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEE-EEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKD-TFFVTDASGNPVDPKIVDSIQHQIGRT  394 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D-~F~v~d~~g~~l~~~~~~~l~~~L~~~  394 (437)
                      +.+..+|+||-|++++..|+++|+||.+......  +..... .+.|..   +.  +...++|.+.|.+.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~---e~--~~~~~~i~~~L~~~   66 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP---MD--RSKENELIEELKAK   66 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE---ec--chHHHHHHHHHhCc
Confidence            6788999999999999999999999998866544  222222 233321   11  22366777777664

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=96.00  E-value=0.068  Score=47.44  Aligned_cols=68  Identities=16%  Similarity=0.218  Sum_probs=51.3

Q ss_pred             cCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCH-HHHHHHHHHHh
Q 013722          111 VPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQ-KRLLKIKKLLC  185 (437)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~-~~~~~l~~~L~  185 (437)
                      ........+.+...|+||+|++|..+++.+|+||....... .++.+.-.|.+...       +. .+++.|-+.|+
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs-------~~~~~L~~Li~~L~  133 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS-------SMEGDIDELLEKLR  133 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC-------ChHHHHHHHHHHHH
Confidence            34557788999999999999999999999999999988765 35666667776652       22 25566665554

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.00  E-value=0.042  Score=41.83  Aligned_cols=65  Identities=23%  Similarity=0.283  Sum_probs=44.1

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV  398 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~  398 (437)
                      +.+.+..+|+||.|..+++.|.++|+||.+....-.  ++...=+|.+...     +   .+.+.+.|.+.-+.|
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~-----~---~~~~~~~L~~~G~~v   68 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM-----N---PRPIIEDLRRAGYEV   68 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC-----C---HHHHHHHHHHCCCee
Confidence            478899999999999999999999999998765332  2344444554311     1   125666666654443

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=96.00  E-value=3.1  Score=45.31  Aligned_cols=117  Identities=15%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccC--
Q 013722           25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNAS--   99 (437)
Q Consensus        25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~--   99 (437)
                      .+...|+|.+.   +.+|+.+++..+|++.|++|....  + .+..+ .|.|...+.     ++..+.|.+.+.....  
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence            35678888886   799999999999999999997444  2 33222 255532211     2345556565533211  


Q ss_pred             --cccCcc---eeee-ecCCCceEEEEEE-eCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722          100 --FLNSMR---SSVG-VVPSKEYTSIELT-GTDRPGLLSEVSAVLTDLSCSVVSAEIW  150 (437)
Q Consensus       100 --~~~~~~---r~v~-~~~~~~~t~i~v~-~~DrpGLL~~I~~~l~~~g~~I~~A~i~  150 (437)
                        .|..+.   ..|. .....+...|++. .++.+|+++++...|+++|++|......
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~  474 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS  474 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence              011111   0111 1333455566665 4788999999999999999999887543

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=95.92  E-value=0.054  Score=40.50  Aligned_cols=44  Identities=23%  Similarity=0.295  Sum_probs=35.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-e-CCEEEEEEEE
Q 013722           30 IQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-D-GGYLMDVFYV   73 (437)
Q Consensus        30 I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~-~g~~~d~F~V   73 (437)
                      +.+.++|+||.+++++.+|+++|++|....... . ++...-.|.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            578999999999999999999999999888765 2 4555433444

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.91  E-value=0.066  Score=38.96  Aligned_cols=61  Identities=21%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      |.|...|+||.+.+|+..|.+++++|....+...+ +.+.-.|.+...     +....+.+.+.|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            46788999999999999999999999999987765 333334444321     23455666666654

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK08577 hypothetical protein; Provisional

Probab=95.90  E-value=0.072  Score=46.54  Aligned_cols=78  Identities=12%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             CEEEEeeCCC--CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeCCCCCCCcHHHHHHH
Q 013722           15 PRVVIDNDVC--EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD--GGYLMDVFYVTDINGQKIGDQATISYI   90 (437)
Q Consensus        15 ~~V~v~~~~~--~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l   90 (437)
                      -.|.+.+...  +..+.+.|.+.|+||+|++++.+|+++|.||.+....+.  ++.+.-.|.+.-.+..     ..++.+
T Consensus        42 ~~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~-----~~l~~l  116 (136)
T PRK08577         42 KEIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD-----IDLEEL  116 (136)
T ss_pred             CEEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch-----hhHHHH
Confidence            3555555433  347899999999999999999999999999998887663  4555444555322221     234566


Q ss_pred             HHHHhhc
Q 013722           91 KTTVETN   97 (437)
Q Consensus        91 ~~~L~~~   97 (437)
                      .+.|...
T Consensus       117 ~~~L~~l  123 (136)
T PRK08577        117 EEELKKL  123 (136)
T ss_pred             HHHHHcC
Confidence            6666554

>PRK04435 hypothetical protein; Provisional

Probab=95.82  E-value=0.085  Score=46.82  Aligned_cols=75  Identities=13%  Similarity=0.062  Sum_probs=55.4

Q ss_pred             EEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722           18 VIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIKTTVET   96 (437)
Q Consensus        18 ~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~   96 (437)
                      -+.....+....+.+.++|+||+|++|+.+|+++|+||..-.... .+|.+.-.|.|...+.     ...++.|.+.|..
T Consensus        60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~  134 (147)
T PRK04435         60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRN  134 (147)
T ss_pred             CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence            344445567789999999999999999999999999999887765 4576665677743211     1256677777766


Q ss_pred             c
Q 013722           97 N   97 (437)
Q Consensus        97 ~   97 (437)
                      .
T Consensus       135 i  135 (147)
T PRK04435        135 L  135 (147)
T ss_pred             C
Confidence            4

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.74  E-value=0.096  Score=39.82  Aligned_cols=47  Identities=26%  Similarity=0.526  Sum_probs=36.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEE
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVK  163 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~  163 (437)
                      +.+.+..+|+||.|.+++.+|+++|+||.+....-.  ++...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            468889999999999999999999999998875432  33444455554

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.72  E-value=0.05  Score=41.04  Aligned_cols=58  Identities=19%  Similarity=0.380  Sum_probs=42.2

Q ss_pred             CCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722          334 DRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV  398 (437)
Q Consensus       334 DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~  398 (437)
                      |+||.|.+|+.+|...|.||.+..+..  .++.+.=++.+..   .   +...+.|.++|.+ +.+|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~---~---~~~i~~l~~Ql~K-lidV   60 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG---D---DREIEQLVKQLEK-LIDV   60 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHC-STTE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee---C---chhHHHHHHHHhc-cCCe
Confidence            789999999999999999999999987  3455554554432   1   2356778888887 5554

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.67  E-value=0.013  Score=44.30  Aligned_cols=44  Identities=23%  Similarity=0.269  Sum_probs=36.0

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEE
Q 013722           30 IQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV   73 (437)
Q Consensus        30 I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V   73 (437)
                      +.+.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            67899999999999999999999999877665555766555544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.64  E-value=0.099  Score=36.01  Aligned_cols=35  Identities=37%  Similarity=0.629  Sum_probs=31.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN  153 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~  153 (437)
                      |.+.++|+||.+++|+.+|+++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46788999999999999999999999999987643

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.64  E-value=0.049  Score=41.09  Aligned_cols=56  Identities=14%  Similarity=0.301  Sum_probs=38.9

Q ss_pred             CCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          125 DRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       125 DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      |+||.|.+|+++|...|.||.+..+..  .++...-++.+..  .      +...+.|...|.+..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~------~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--D------DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--C------chhHHHHHHHHhccC
Confidence            789999999999999999999999987  3344444444443  1      224466777776543

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.58  E-value=0.075  Score=36.64  Aligned_cols=35  Identities=37%  Similarity=0.505  Sum_probs=31.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG  362 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g  362 (437)
                      |.+.+.|+||++++|..+|.++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46888999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.39  E-value=0.037  Score=42.11  Aligned_cols=46  Identities=22%  Similarity=0.463  Sum_probs=36.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEe
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKD  164 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~  164 (437)
                      +.+..+|+||.+++|+.+|+++|+||.+.....  .++.+.-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            456899999999999999999999999888765  3455655555543

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK07334 threonine dehydratase; Provisional

Probab=95.31  E-value=0.12  Score=53.52  Aligned_cols=66  Identities=18%  Similarity=0.281  Sum_probs=51.2

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-----CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722          114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-----NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN  186 (437)
Q Consensus       114 ~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (437)
                      .....|.|.+.||||+|++|+.+|++.++||.+....+.     ++.+.-.|.|.-.       +.++++.+.+.|+.
T Consensus       324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-------d~~~L~~vi~~Lr~  394 (403)
T PRK07334        324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-------DAAHLQEVIAALRA  394 (403)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            345789999999999999999999999999999998764     3455555555442       46677777777764

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.23  E-value=0.14  Score=39.56  Aligned_cols=63  Identities=19%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             EEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          329 ELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       329 ev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      -+..+|+||-|++|..+|+++|+||.+-.-.... ....=.|||. .+|.. .+...+.+-+.|.+
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~~~~~~~l~~l~~   66 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CCHHHHHHHHHHHH
Confidence            3455799999999999999999999988665543 3455577774 34532 22334444455544

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK11899 prephenate dehydratase; Provisional

Probab=95.18  E-value=0.07  Score=52.47  Aligned_cols=54  Identities=17%  Similarity=0.250  Sum_probs=43.7

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCC
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVD  380 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~  380 (437)
                      |.|-+..+|+||.||++-.+|+++|||+.+-.-...+.+-++ .||| |.+|..-+
T Consensus       195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d  249 (279)
T PRK11899        195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPED  249 (279)
T ss_pred             EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCC
Confidence            566666789999999999999999999999888877666555 7888 56676533

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.10  E-value=0.12  Score=40.02  Aligned_cols=48  Identities=23%  Similarity=0.388  Sum_probs=37.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEE-EEEEEEcCCC
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVK-DTFFVTDASG  376 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~-D~F~v~d~~g  376 (437)
                      |-+...|+||-|+++-..|+++|||+.+-.-.....+-. =.||| |-+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence            445568999999999999999999999887776654433 47777 4456

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK07334 threonine dehydratase; Provisional

Probab=95.10  E-value=0.37  Score=49.93  Aligned_cols=66  Identities=15%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-----CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM-----GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI  395 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-----g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~  395 (437)
                      .+.|+|.+.||||+|++|+.+|.+.++||.+....+.     ++.+.-.|.|.-.     +.++++.+.+.|.+.-
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~~g  396 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRAAG  396 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHHcC
Confidence            3789999999999999999999999999999998765     3455545555321     2357788888887753

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.88  E-value=0.88  Score=46.96  Aligned_cols=106  Identities=14%  Similarity=0.252  Sum_probs=66.9

Q ss_pred             CeEEEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722           26 HATVIQVD---SVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN  102 (437)
Q Consensus        26 ~~~~I~V~---~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  102 (437)
                      +...|+|.   .++++|.++++...|.+.|++|..-... ..+.. -.|.|...+.     +...+.|.+.+....    
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~~~-Is~~V~~~d~-----~~a~~~L~~~~~~~~----  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSETS-ISLTVDETDA-----DEAVRALKDQSGAAG----  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCCce-EEEEEeHHHH-----HHHHHHHHHHHHhcC----
Confidence            45678887   6789999999999999999999743322 12211 2355621110     122233333221110    


Q ss_pred             CcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEE
Q 013722          103 SMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVS  146 (437)
Q Consensus       103 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~  146 (437)
                        ...+  ....+...|+|.+.   ++||+++++..+|++.|+||..
T Consensus       328 --~~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 --LDRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             --CceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence              0111  22336778888885   7899999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.75  E-value=0.16  Score=41.15  Aligned_cols=51  Identities=16%  Similarity=0.342  Sum_probs=40.8

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCC
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGN  377 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~  377 (437)
                      +.|-+..+|+||-|+++-..|+++|||+.+-.-.....+-++ .||| |.+|.
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~   66 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK   66 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence            466677799999999999999999999999888776555444 7777 45565

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.63  E-value=0.33  Score=37.39  Aligned_cols=64  Identities=14%  Similarity=0.158  Sum_probs=44.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN  186 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (437)
                      +.+..+|+||-|+++..+|+.+|+||.+.+..... ....-.|+|.-.  |..  ++...+.+-+.|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~--~~~--~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE--GHI--DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE--CCC--CCHHHHHHHHHHHH
Confidence            34556899999999999999999999999776533 356667777762  431  23344544445443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.62  E-value=0.077  Score=41.08  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      +++.+.-||-.++++|-+|..+|+-|.+|+|..  .+++...+|.+--...+..+.....-..+.+.+...|.|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~lmg   76 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTLMG   76 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHHhc
Confidence            688899999999999999999999999999975  455666665433211233343343446666666665543

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.49  E-value=0.021  Score=45.65  Aligned_cols=62  Identities=18%  Similarity=0.255  Sum_probs=43.7

Q ss_pred             EEEEEeCC-CcchHHHHHHHHHhCCCeEEEEEEEe---------cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722          118 SIELTGTD-RPGLLSEVSAVLTDLSCSVVSAEIWT---------HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV  187 (437)
Q Consensus       118 ~i~v~~~D-rpGLL~~I~~~l~~~g~~I~~A~i~T---------~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a  187 (437)
                      .|+|.|.| ++|++++|+++|+++|+||.+.+--+         ......-.|.|+.+    +. +.   +.++++|.+.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~~---~~lr~~L~~l   72 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-DL---EALRAALLEL   72 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-CH---HHHHHHHHHH
Confidence            37899999 99999999999999999997655422         11244556777653    22 33   6677777743

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.43  E-value=2.1  Score=44.17  Aligned_cols=100  Identities=13%  Similarity=0.104  Sum_probs=66.6

Q ss_pred             CCeeEEEEE---eCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-
Q 013722          245 RDYTAVTIR---SKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER-  320 (437)
Q Consensus       245 ~~~t~V~V~---~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-  320 (437)
                      .+...|.|.   .++++|.++++..+|.+.++||........ ... -+|.|...         ..++..+.|.+.+.. 
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s-~~~-Is~~V~~~---------d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPS-ETS-ISLTVDET---------DADEAVRALKDQSGAA  326 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCC-Cce-EEEEEeHH---------HHHHHHHHHHHHHHhc
Confidence            455678887   678899999999999999999975533211 111 24555332         233334444443311 


Q ss_pred             c-----c-CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEE
Q 013722          321 R-----A-SEGLELELYTD---DRFGLLSDITRILREYGLCIRR  355 (437)
Q Consensus       321 ~-----~-~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~  355 (437)
                      .     . ..-.+|.|.+.   ++||+++++.++|.+.||||.+
T Consensus       327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            1     1 12356677774   7899999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK06635 aspartate kinase; Reviewed

Probab=94.32  E-value=1.3  Score=45.75  Aligned_cols=109  Identities=14%  Similarity=0.179  Sum_probs=67.9

Q ss_pred             eEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCc
Q 013722           27 ATVIQVD-SVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSM  104 (437)
Q Consensus        27 ~~~I~V~-~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  104 (437)
                      ...|+|. ..++||.++++..+|++.|+||..-..+. .+|..--.|.|...         ..+...+.|.+.... .. 
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~---------~~~~a~~~L~~~~~~-~~-  330 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD---------DLEKALELLEEVKDE-IG-  330 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH---------HHHHHHHHHHHHHHH-cC-
Confidence            3445544 57799999999999999999999654432 22344434666321         112223333321000 00 


Q ss_pred             ceeeeecCCCceEEEEEEe---CCCcchHHHHHHHHHhCCCeEEEEE
Q 013722          105 RSSVGVVPSKEYTSIELTG---TDRPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       105 ~r~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                      .+.+  ....+...++|.+   +++||.+++|..+|+++|+||....
T Consensus       331 ~~~i--~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        331 AESV--TYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             cceE--EEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            0111  2233567788876   6899999999999999999998753

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=94.12  E-value=0.25  Score=46.49  Aligned_cols=58  Identities=21%  Similarity=0.356  Sum_probs=45.8

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHH
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDS  386 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~  386 (437)
                      ++.+-+.-.||||.+..|+..|.++||||-...+...  |++|.-+..|.    ++++++.+++
T Consensus       148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD----~~v~~~vl~~  207 (208)
T TIGR00719       148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID----KNIDDHIKDA  207 (208)
T ss_pred             ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC----CCCCHHHHhh
Confidence            4478888899999999999999999999999999764  67777666663    3566554443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.10  E-value=0.29  Score=54.31  Aligned_cols=64  Identities=17%  Similarity=0.244  Sum_probs=50.8

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      ....|.|.+.||+|||++|+.+++..++||.++.+.+.  ++.+...|.|.-.       +..++.++-..|+
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~~L~  730 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLGKLN  730 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            44578999999999999999999999999999998774  4666666666542       4567777776665

>PRK06291 aspartate kinase; Provisional

Probab=94.06  E-value=1.8  Score=45.85  Aligned_cols=109  Identities=10%  Similarity=0.193  Sum_probs=70.5

Q ss_pred             CeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722           26 HATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN  102 (437)
Q Consensus        26 ~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  102 (437)
                      +...|+|.+.   +.+|+++++..+|+++|++|..-...+..-.+  .|.|...+-     +...+.|.+.+.....   
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~d~-----~~av~~L~~~~~~~~~---  389 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEADL-----EKALKALRREFGEGLV---  389 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHHHH-----HHHHHHHHHHHHHhcC---
Confidence            4567888764   68999999999999999999865443322212  355532110     1233444444433110   


Q ss_pred             CcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEE
Q 013722          103 SMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEI  149 (437)
Q Consensus       103 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i  149 (437)
                         ..+  .-..+...|.|.|.   +++|+++++..+|+..|+||.....
T Consensus       390 ---~~i--~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq  434 (465)
T PRK06291        390 ---RDV--TFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ  434 (465)
T ss_pred             ---cce--EEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence               111  12235677888885   7899999999999999999985543

>PRK08210 aspartate kinase I; Reviewed

Probab=93.73  E-value=2.6  Score=43.59  Aligned_cols=99  Identities=17%  Similarity=0.280  Sum_probs=67.2

Q ss_pred             CeEEEEEEeCCC-ccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCc
Q 013722           26 HATVIQVDSVNR-HGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSM  104 (437)
Q Consensus        26 ~~~~I~V~~~Dr-pGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  104 (437)
                      +...|+|...+. +|.++++...|+++|+||..-..+..  .  -.|.+..         +..+.+++.|.+.. .    
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~---------~~~~~a~~~l~~~~-~----  331 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSD---------EDSEKAKEILENLG-L----  331 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcH---------HHHHHHHHHHHHhC-C----
Confidence            556777776665 99999999999999999997644321  1  2355531         12233444454421 0    


Q ss_pred             ceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEE
Q 013722          105 RSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVS  146 (437)
Q Consensus       105 ~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~  146 (437)
                        .+  ....+...|.|.+.   ++||+++++..+|++.|+||..
T Consensus       332 --~v--~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 --KP--SVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             --cE--EEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence              11  12235677888874   8899999999999999999974

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=93.70  E-value=0.38  Score=37.49  Aligned_cols=50  Identities=18%  Similarity=0.314  Sum_probs=38.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCe-EEEEEEEEcCCCCC
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRK-VKDTFFVTDASGNP  378 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~-a~D~F~v~d~~g~~  378 (437)
                      +-+..+|+||-|+++-..|+++|||+.+-.-...... -+=.||| |.+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence            4455689999999999999999999998888776444 4447777 445544

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=93.34  E-value=1.1  Score=36.37  Aligned_cols=69  Identities=14%  Similarity=0.092  Sum_probs=48.4

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      ..+.+.+..+|+||-|+++-..|+.+|+|+.+....... ....=.|||.-  .|. . + ..++.+-+.|.+.+
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~   82 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDI   82 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHh
Confidence            446777777999999999999999999999999887643 34455777776  244 2 2 34444444544433

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.30  E-value=0.47  Score=52.59  Aligned_cols=64  Identities=14%  Similarity=0.219  Sum_probs=49.9

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      -...|.|.+.||+|+|++|+.+++..++||.++.+.+.+ +.+...|.|.-.       +..++..+-..|+
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~i~~~Lr  689 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-------DRVHLANIMRKIR  689 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            455789999999999999999999999999999987754 455555665542       4566777766655

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.26  E-value=0.18  Score=40.25  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=41.1

Q ss_pred             EEEEEeCC-CcchHHHHHHHHHHcCCeEEEEEe-----eecC----CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          327 ELELYTDD-RFGLLSDITRILREYGLCIRRAEI-----STMG----RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       327 ~iev~~~D-rpGLL~~I~~~l~~~~i~I~~A~I-----~T~g----~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      +|+|.+.| ++|.+++|+++|+++|+||..-+=     ...+    .+..-.|.|+.   .+.   ..+.++++|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~---~~~---~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG---QPA---DLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC---CCC---CHHHHHHHHHH
Confidence            47899999 999999999999999999964221     1112    35566787863   332   23455555543

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.21  E-value=0.43  Score=52.98  Aligned_cols=64  Identities=17%  Similarity=0.231  Sum_probs=49.8

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      ...|.|.+.||+|||++|+.++++.++||.+..+.+.  ++.+.-.|.|.-.     +-+.+..|-+.|.+
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            3589999999999999999999999999999999875  3556666666421     12566777777765

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.19  E-value=0.36  Score=43.27  Aligned_cols=47  Identities=11%  Similarity=0.430  Sum_probs=38.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEEEe
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHVKD  164 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V~~  164 (437)
                      -+.+.+.++||.|.+++++++++|.||..|+.+..+  ..+.-.|.+.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg   52 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG   52 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence            478889999999999999999999999999998733  34554555544

>PRK06635 aspartate kinase; Reviewed

Probab=93.09  E-value=1  Score=46.47  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=66.9

Q ss_pred             eeEEEEE-eCCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH---Hhh-
Q 013722          247 YTAVTIR-SKDRPKLLFDTVCCLTDMQYVVYHGTVVTGR-MEAYQEYYIKHVDGFPISSEAERQRVMACLEAA---IER-  320 (437)
Q Consensus       247 ~t~V~V~-~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~-g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~---l~~-  320 (437)
                      ...|++. ..++||.++++..+|.+.|+||......... |+.--+|.|...         ..+...+.|++.   +.- 
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~---------~~~~a~~~L~~~~~~~~~~  332 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD---------DLEKALELLEEVKDEIGAE  332 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH---------HHHHHHHHHHHHHHHcCcc
Confidence            3444444 5778999999999999999999976443322 345456666432         222333334431   110 


Q ss_pred             cc---CCCcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEE
Q 013722          321 RA---SEGLELELYT---DDRFGLLSDITRILREYGLCIRRA  356 (437)
Q Consensus       321 ~~---~~~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A  356 (437)
                      ..   ..-..++|.+   .++||.+++|.++|+++||||...
T Consensus       333 ~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        333 SVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             eEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence            01   1235688866   689999999999999999999884

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.76  E-value=0.83  Score=34.58  Aligned_cols=60  Identities=20%  Similarity=0.295  Sum_probs=40.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN  186 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (437)
                      +.|.-+||||=|.+++.+++. |.||...+-...+ +.+.-.+.+..+       ++++.+.+.+.|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~-------~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP-------DREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            357789999999999999999 9999987655433 222222233331       35566777776654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09034 aspartate kinase; Reviewed

Probab=92.70  E-value=2.9  Score=44.11  Aligned_cols=111  Identities=12%  Similarity=0.123  Sum_probs=69.3

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722           26 HATVIQVDS---VNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN  102 (437)
Q Consensus        26 ~~~~I~V~~---~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  102 (437)
                      +.+.|++..   ++++|+++++...|+++|++|.--   +.+.. --.|.|...+   ... ..+..+...|......  
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~-sis~~v~~~~---~~~-a~~~~l~~el~~~~~~--  376 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGID-DLSIIIRERQ---LTP-KKEDEILAEIKQELNP--  376 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCc-EEEEEEeHHH---hhH-HHHHHHHHHHHHhhCC--
Confidence            456677764   678999999999999999999864   22222 2246664321   110 0112333333322110  


Q ss_pred             CcceeeeecCCCceEEEEEEe---CCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          103 SMRSSVGVVPSKEYTSIELTG---TDRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       103 ~~~r~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                         ..+  ....+...|++.+   .++||+++++..+|+.+|+||......+
T Consensus       377 ---~~I--~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        377 ---DEL--EIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             ---ceE--EEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence               011  2233577888866   3789999999999999999998775433

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.63  E-value=0.66  Score=51.40  Aligned_cols=64  Identities=25%  Similarity=0.317  Sum_probs=49.9

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      -.+.|.|.+.||+|+|++|+.+++.+++||.+..+.+. ++.+.-.|.|.-.       +-.++..+-..|.
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~ii~~L~  673 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-------NYKHLLKIMLKIK  673 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            45679999999999999999999999999999999875 3555555555542       4566777766665

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=92.55  E-value=0.54  Score=44.18  Aligned_cols=53  Identities=17%  Similarity=0.173  Sum_probs=42.0

Q ss_pred             CCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEe
Q 013722          112 PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKD  164 (437)
Q Consensus       112 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~  164 (437)
                      -.+....+-+.-.|+||.+..|+.+|.++++||...++..  .++.+.-+..+..
T Consensus       144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            3345667778889999999999999999999999999987  3455655555543

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.33  E-value=0.82  Score=34.63  Aligned_cols=66  Identities=11%  Similarity=0.102  Sum_probs=44.8

Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV  398 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~  398 (437)
                      +.|.-+||||=|.++++++.+ |.||....-...+.....++......    +++..+++.++|.+.-..+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~i~~~L~~~G~~~   66 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP----DREDLAELKERLEALGYPY   66 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC----CHHHHHHHHHHHHHcCCCc
Confidence            357789999999999999999 99998766655443233334332211    2467788888888754443

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.07  E-value=0.72  Score=51.13  Aligned_cols=64  Identities=17%  Similarity=0.152  Sum_probs=49.4

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      ...|.|.+.||+|+|++|+.++.+.++||.++.+.+.. ..+.-.|.|.-.     +-+++..|-+.|..
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            35899999999999999999999999999999988765 455555555321     12566777777765

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=92.01  E-value=0.56  Score=45.92  Aligned_cols=55  Identities=18%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCC
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVD  380 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~  380 (437)
                      .|.|-+..+|+||-|+++-.+|+.+|||+.+-.-.-.+..-++ .||| |-.|..-+
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~  249 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD  249 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence            5678888889999999999999999999999988888777777 6666 66676644

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=91.94  E-value=1.2  Score=34.48  Aligned_cols=47  Identities=11%  Similarity=0.141  Sum_probs=37.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEe
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKD  164 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~  164 (437)
                      .+.+..+|+||-|+++-..|+.+|+|+...+..... ....=.|+|.-
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            345556899999999999999999999999887643 34556677776

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.92  E-value=0.31  Score=50.58  Aligned_cols=60  Identities=23%  Similarity=0.293  Sum_probs=49.1

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHH
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQ  388 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~  388 (437)
                      .+.|-+.-.|+||.++.|+.+|+++|+||..-+..+.|+.|.-+|.+.   + ++.++.+++|+
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D---~-~~~~~~~~~i~  397 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD---A-DYAEEALDALK  397 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC---C-CCcHHHHHHHH
Confidence            478888999999999999999999999999999999998887777663   2 44544555554

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=91.73  E-value=0.7  Score=39.26  Aligned_cols=52  Identities=17%  Similarity=0.217  Sum_probs=41.1

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCC
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNP  378 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~  378 (437)
                      +.|-+..+|+||-|++|-..|+.+|||+.+-.-...+..-++ .||| |.+|..
T Consensus        42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~   94 (115)
T cd04930          42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR   94 (115)
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence            466666699999999999999999999999888877665554 6777 445543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02551 aspartokinase

Probab=91.67  E-value=8.1  Score=41.51  Aligned_cols=113  Identities=17%  Similarity=0.151  Sum_probs=68.8

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHH-HHHHHHhhccCc
Q 013722           25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATIS-YIKTTVETNASF  100 (437)
Q Consensus        25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~-~l~~~L~~~~~~  100 (437)
                      .+.+.|+|.+.   +.+|.++++...|+++|++|.--  .+. .. --.|.|...+-.   ..+.++ .+++.+.+... 
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssS-e~-sIs~~v~~~~~~---~~~~i~~~l~~l~~el~~-  435 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS-EV-SISLTLDPSKLW---SRELIQQELDHLVEELEK-  435 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ecc-CC-EEEEEEehhHhh---hhhhHHHHHHHHHHHhhc-
Confidence            35577788655   68999999999999999999855  232 21 123666332211   111111 12121112110 


Q ss_pred             ccCcceeeeecCCCceEEEEEEeC--CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          101 LNSMRSSVGVVPSKEYTSIELTGT--DRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       101 ~~~~~r~v~~~~~~~~t~i~v~~~--DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                         . ..+  .-..+...|+|+|.  .+||+++++..+|+..|+||......+
T Consensus       436 ---~-~~V--~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        436 ---I-AVV--NLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             ---C-CeE--EEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence               0 011  22345777888864  689999999999999999998766443

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=91.65  E-value=6.2  Score=44.79  Aligned_cols=116  Identities=13%  Similarity=0.170  Sum_probs=73.0

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722           25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL  101 (437)
Q Consensus        25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  101 (437)
                      ++...|+|.+.   ++||+++++...|+++|++|......+ +..- -.|.|...+.     +...+.|.+.+...... 
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~-  384 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKE-  384 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhcc-
Confidence            45678888754   689999999999999999997554433 2221 2366632111     12333444444221110 


Q ss_pred             cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                       .....+  ....+...|+|.|.   ++||+++++..+|++.|+||....-.+
T Consensus       385 -~~~~~i--~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqgs  434 (819)
T PRK09436        385 -GLLEPL--EVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGS  434 (819)
T ss_pred             -CCcceE--EEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEecc
Confidence             000111  22346778888886   789999999999999999998765433

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.55  E-value=0.76  Score=34.67  Aligned_cols=46  Identities=17%  Similarity=0.434  Sum_probs=36.2

Q ss_pred             CceEEEEEEeC----CCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722          114 KEYTSIELTGT----DRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD  164 (437)
Q Consensus       114 ~~~t~i~v~~~----DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~  164 (437)
                      .+...|+|.++    |.||++++++..|++.|++|....  |   ...+.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            35677888887    799999999999999999998777  4   4466666665

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.21  E-value=0.79  Score=34.59  Aligned_cols=41  Identities=20%  Similarity=0.241  Sum_probs=31.2

Q ss_pred             EEEEEeC----CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          327 ELELYTD----DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       327 ~iev~~~----DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      .|.|.++    |.||+++++..+|++.||+|....  |+   -.|.|.|.
T Consensus         8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~   52 (65)
T PF13840_consen    8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVK   52 (65)
T ss_dssp             EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEE
T ss_pred             EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEe
Confidence            5666666    799999999999999999998766  33   34566664

>PRK06382 threonine dehydratase; Provisional

Probab=91.08  E-value=1.3  Score=45.89  Aligned_cols=67  Identities=21%  Similarity=0.219  Sum_probs=48.5

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE----e-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722          113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW----T-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN  186 (437)
Q Consensus       113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~----T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (437)
                      ....+.++|.-+|+||-|++|+.+|.++|+||.+....    . ..+...-+|.|...       +++..+.+.+.|.+
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            44677899999999999999999999999999887764    1 23445556666552       34444566666553

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=90.97  E-value=1.1  Score=49.65  Aligned_cols=64  Identities=25%  Similarity=0.228  Sum_probs=48.4

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      .+.|.|.+.||+|+|++|+.++++.++||.+..+.+.. +.+.-.|.|.-.     +-..+..|-+.|..
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~~  674 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIKT  674 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            45899999999999999999999999999999998874 444444555321     12466666666665

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.79  E-value=2  Score=34.17  Aligned_cols=60  Identities=13%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCC-HHHHHHHHHHHhh
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIED-QKRLLKIKKLLCN  186 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~-~~~~~~l~~~L~~  186 (437)
                      ++.|.-+|+||=|++++.+|+  +.||....-.. ..+.+.-.+.+..+       + ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-------~~~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-------NGAEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-------CcHHHHHHHHHHHHH
Confidence            577888999999999999999  55665433332 22444444445542       3 4566666666654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=90.68  E-value=9  Score=39.60  Aligned_cols=97  Identities=13%  Similarity=0.183  Sum_probs=64.1

Q ss_pred             CCeeEEEEEeCCC-CchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--c
Q 013722          245 RDYTAVTIRSKDR-PKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--R  321 (437)
Q Consensus       245 ~~~t~V~V~~~Dr-pgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~  321 (437)
                      .+-..|+|...+. ||.++++...|.+.|+||........ .   -+|.+...         ..+++.+.|++. ..  .
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~-~---is~~v~~~---------~~~~a~~~l~~~-~~~v~  334 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT-E---VVFTVSDE---------DSEKAKEILENL-GLKPS  334 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc-e---EEEEEcHH---------HHHHHHHHHHHh-CCcEE
Confidence            3455677776555 99999999999999999998744321 1   23444321         233333334331 11  0


Q ss_pred             c-CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEE
Q 013722          322 A-SEGLELELYTD---DRFGLLSDITRILREYGLCIRR  355 (437)
Q Consensus       322 ~-~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~  355 (437)
                      . ..-..|.|.+.   ++||+++++.++|.+.||+|.+
T Consensus       335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            1 12356667774   7899999999999999999975

>PRK09181 aspartate kinase; Validated

Probab=90.64  E-value=14  Score=39.12  Aligned_cols=106  Identities=14%  Similarity=0.222  Sum_probs=69.1

Q ss_pred             CeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722           26 HATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN  102 (437)
Q Consensus        26 ~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  102 (437)
                      +.+.|+|.+.   +.+|+.+++...|+++|++|.  .+.+...  --.|.|...  .     ...+.+.+.|......  
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~--~-----~~~~~~~~~L~~~~~~--  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS--L-----KTLKRVIAELEKRYPN--  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC--h-----HHHHHHHHHHHHhcCC--
Confidence            5667777544   689999999999999999998  3333221  223566321  1     1223444444432210  


Q ss_pred             CcceeeeecCCCceEEEEEEeCC--CcchHHHHHHHHHhCCCeEEEEEEE
Q 013722          103 SMRSSVGVVPSKEYTSIELTGTD--RPGLLSEVSAVLTDLSCSVVSAEIW  150 (437)
Q Consensus       103 ~~~r~v~~~~~~~~t~i~v~~~D--rpGLL~~I~~~l~~~g~~I~~A~i~  150 (437)
                         ..+.   ..+...|.++|..  +||+.+++..+|++.|+||......
T Consensus       395 ---~~i~---~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg  438 (475)
T PRK09181        395 ---AEVT---VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS  438 (475)
T ss_pred             ---ceEE---ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence               0121   1467788888754  8999999999999999999766543

>PRK06545 prephenate dehydrogenase; Validated

Probab=90.33  E-value=1  Score=45.83  Aligned_cols=52  Identities=17%  Similarity=0.313  Sum_probs=44.2

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722          113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD  164 (437)
Q Consensus       113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~  164 (437)
                      -...+.|.|.-+|+||-+++|+..|...|+||.+.+|.-.-+....++.++-
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            3467899999999999999999999999999999999765556666666665

>PRK06349 homoserine dehydrogenase; Provisional

Probab=89.86  E-value=1.4  Score=46.07  Aligned_cols=65  Identities=22%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      .+.|.+...|+||.|++|+..|.++|++|.+..-....+.....+++++.    .+..+.+++...|.+
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~----~~e~~l~~~i~~L~~  412 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE----TSEAALRAALAAIEA  412 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe----CCHHHHHHHHHHHhc
Confidence            47899999999999999999999999999987665443344556667652    233444555555554

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=89.85  E-value=1.3  Score=34.47  Aligned_cols=46  Identities=15%  Similarity=0.161  Sum_probs=37.2

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEe
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKD  164 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~  164 (437)
                      +.+..+|+||-|+++-..|+.+|+|+...+.... +....=.|||.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            4455689999999999999999999999988763 344556777776

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=89.48  E-value=17  Score=38.51  Aligned_cols=103  Identities=11%  Similarity=0.114  Sum_probs=67.9

Q ss_pred             CCeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-
Q 013722          245 RDYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER-  320 (437)
Q Consensus       245 ~~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-  320 (437)
                      .+...|.|.+.   +.+|+++++..+|.+.|+||......+.. .. -+|.|...         ..+...+.|.+.+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse-~s-Isf~V~~~---------d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE-SN-ISLVVDEA---------DLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC-ce-EEEEEeHH---------HHHHHHHHHHHHHHHh
Confidence            34567777754   68999999999999999999876443322 11 23444442         222233334443332 


Q ss_pred             cc------CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEe
Q 013722          321 RA------SEGLELELYTD---DRFGLLSDITRILREYGLCIRRAEI  358 (437)
Q Consensus       321 ~~------~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I  358 (437)
                      ..      ..-.+|.|.+.   ++||+++++..+|.+.||+|..---
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq  434 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ  434 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence            11      12357888885   6899999999999999999985443

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=88.96  E-value=1.5  Score=45.15  Aligned_cols=55  Identities=20%  Similarity=0.276  Sum_probs=43.5

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCC
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVD  380 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~  380 (437)
                      .+.|-+..+|+||.|+++-.+|+.+|||+.+-.-...+.+-++ .||| |..|..-+
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d  352 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRS  352 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCC
Confidence            3556677789999999999999999999999888876666555 7887 55675533

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=88.67  E-value=18  Score=32.61  Aligned_cols=112  Identities=13%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-EeC-CEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCc
Q 013722           27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS-SDG-GYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSM  104 (437)
Q Consensus        27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~-t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  104 (437)
                      ...+.+.-.|.||.|+++++.|++.|+||.+-.+. |+. +..--++.+ ..  .    +..+++|.+.|....+.+   
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~g--~----~~~~EQi~kQL~kLidV~---   73 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-SG--D----EQVLEQIIKQLNKLIDVL---   73 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-cC--C----cchHHHHHHHHHhhccce---
Confidence            45788999999999999999999999999998886 543 333323333 22  1    235577777776654321   


Q ss_pred             ceeeeec----CCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          105 RSSVGVV----PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       105 ~r~v~~~----~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                       +.++..    -...-..+-+.+.--  ....+.+.....+.+|.+..-.+
T Consensus        74 -kV~d~~~~~~veRel~LiKv~~~~~--~R~ei~~~~~ifr~~vvDvs~~~  121 (163)
T COG0440          74 -KVLDLTSEPHVERELALIKVSAEGS--ERGEIARITEIFRASVVDVSPES  121 (163)
T ss_pred             -eEEEcCCcchhheeeEEEEEecCcc--chHHHHHHHHHhCceEEecCcce
Confidence             111111    111222333333221  14566677666777776655443

>PRK11899 prephenate dehydratase; Provisional

Probab=88.56  E-value=2.9  Score=41.17  Aligned_cols=52  Identities=12%  Similarity=0.083  Sum_probs=42.0

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCC
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGC  169 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~  169 (437)
                      .|.+-+..+|+||.|+++-.+|+.+|+|+.+.+..-.. +...=.|||.-  .|.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~  246 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH  246 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence            56777777999999999999999999999999988644 44555777776  354

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=88.51  E-value=1.5  Score=39.35  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=34.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCC-EEE
Q 013722           29 VIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGG-YLM   68 (437)
Q Consensus        29 ~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g-~~~   68 (437)
                      -+.+.+.|+||.|.+++++++++|.||..|+.+. .+| .+.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~   45 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKAL   45 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEE
Confidence            4788999999999999999999999999999986 344 444

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=88.39  E-value=2.5  Score=46.51  Aligned_cols=66  Identities=23%  Similarity=0.300  Sum_probs=49.0

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCce-eEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR-AAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~-~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      ..-.+.|.|.+.||+|+|++|+.+|+..++||.+....+.+++ +.-.|.+.-.       |..++..+-..|.
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-------n~~~L~~i~~~l~  690 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-------NLNHLGRVLARLK  690 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-------cHHHHHHHHHHHh
Confidence            3466789999999999999999999999999999998875333 4434444432       4556666666554

>PRK09034 aspartate kinase; Reviewed

Probab=88.35  E-value=15  Score=38.67  Aligned_cols=107  Identities=12%  Similarity=0.137  Sum_probs=67.3

Q ss_pred             CeeEEEEE---eCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-c
Q 013722          246 DYTAVTIR---SKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER-R  321 (437)
Q Consensus       246 ~~t~V~V~---~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-~  321 (437)
                      +-+.|++.   .++++|..+++...|++.|+||...   +.+... -+|.+...+-.    ...+..+.+.|+..+.. .
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~s-is~~v~~~~~~----~a~~~~l~~el~~~~~~~~  378 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGIDD-LSIIIRERQLT----PKKEDEILAEIKQELNPDE  378 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCcE-EEEEEeHHHhh----HHHHHHHHHHHHHhhCCce
Confidence            34566666   4678999999999999999999975   222222 35666653210    00112333333322210 0


Q ss_pred             c---CCCcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEEEeee
Q 013722          322 A---SEGLELELYT---DDRFGLLSDITRILREYGLCIRRAEIST  360 (437)
Q Consensus       322 ~---~~~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~I~T  360 (437)
                      .   ..-..|.|.+   .++||+++++-.+|.++||||....-.+
T Consensus       379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            0   1235788865   3789999999999999999998775434

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=88.26  E-value=1.5  Score=39.35  Aligned_cols=68  Identities=21%  Similarity=0.301  Sum_probs=48.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      ...+.+.-.|.||.|+++++.|+..|.||.+..+.- ......-+-.|+.   |    |+...+++...|.+..+-
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLidV   72 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLIDV   72 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhccc
Confidence            346788889999999999999999999999998864 3333333444444   2    234557777777765543

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.15  E-value=0.91  Score=47.18  Aligned_cols=50  Identities=12%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD  164 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~  164 (437)
                      ....|.+.-.|+||.++.|+.+|+++|+||...+..+.++.+.-++.+..
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~  386 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA  386 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence            56788889999999999999999999999999999888877777665543

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=88.08  E-value=1.2  Score=42.53  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=32.9

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                      ...++.+.-.|-||+|++|+++|++.|.||.+.-+--
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~  112 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL  112 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence            3557888889999999999999999999999988754

>PLN02551 aspartokinase

Probab=87.45  E-value=23  Score=38.14  Aligned_cols=133  Identities=16%  Similarity=0.192  Sum_probs=78.8

Q ss_pred             CCeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHH---HH
Q 013722          245 RDYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEA---AI  318 (437)
Q Consensus       245 ~~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~---~l  318 (437)
                      .+-+.|+|.+.   +.+|.++++...|.+.|+||....  + .... -+|.+...+-.      ..+.+++.+.+   .|
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--s-Se~s-Is~~v~~~~~~------~~~~i~~~l~~l~~el  433 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--T-SEVS-ISLTLDPSKLW------SRELIQQELDHLVEEL  433 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--c-cCCE-EEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence            34457777654   689999999999999999999772  2 2222 24555553321      11122222222   12


Q ss_pred             hh--cc---CCCcEEEEEeC--CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHH
Q 013722          319 ER--RA---SEGLELELYTD--DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQI  391 (437)
Q Consensus       319 ~~--~~---~~~~~iev~~~--DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L  391 (437)
                      .+  ..   ..-.+|.|.+.  .+||+++++-.+|.+.||||..-...+-  ...=.|.|.+        ++.++.-++|
T Consensus       434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS--einIS~vV~~--------~d~~~Av~aL  503 (521)
T PLN02551        434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS--KVNISLIVND--------DEAEQCVRAL  503 (521)
T ss_pred             hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC--CcEEEEEEeH--------HHHHHHHHHH
Confidence            21  01   12356777654  6799999999999999999987655342  2222355532        3445555566


Q ss_pred             hhcccc
Q 013722          392 GRTILQ  397 (437)
Q Consensus       392 ~~~~~~  397 (437)
                      ++..+.
T Consensus       504 H~~Ff~  509 (521)
T PLN02551        504 HSAFFE  509 (521)
T ss_pred             HHHHhc
Confidence            665543

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.17  E-value=5.1  Score=31.76  Aligned_cols=67  Identities=10%  Similarity=0.088  Sum_probs=41.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeE-EEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCI-RRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK  399 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I-~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~  399 (437)
                      ++.|.-+||||=|++++.+|...+|+- ...+...  +.+.-.+.+...+|    ++..+++.+.|.+.-..+.
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~~anI~~~~y~~~~~--~~~~v~i~ie~~~~----~~~~~~i~~~L~~~G~~~~   70 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIGPRNITEFNYRYADE--KDAHIFVGVSVANG----AEELAELLEDLKSAGYEVV   70 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhCCCceeEEEEEccCC--CeeEEEEEEEeCCc----HHHHHHHHHHHHHCCCCeE
Confidence            688899999999999999999555541 2233222  33333333432111    3567788888888655554

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=87.02  E-value=1.2  Score=42.58  Aligned_cols=62  Identities=13%  Similarity=0.153  Sum_probs=48.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEE--EEEEEccCCCCCCcHHHHHHHHHHHHHH
Q 013722          249 AVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQ--EYYIKHVDGFPISSEAERQRVMACLEAA  317 (437)
Q Consensus       249 ~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald--~F~V~~~~g~~~~~~~~~~~l~~~L~~~  317 (437)
                      .+.++..|.||++.+++++|+..|+||-+.-+.-+...++.  +.+++..|+       .+++.++.|+..
T Consensus        79 vinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~-------VveQa~rQiedl  142 (309)
T KOG2663|consen   79 VINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDG-------VVEQARRQIEDL  142 (309)
T ss_pred             eEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHH-------HHHHHHHHHHHh
Confidence            57889999999999999999999999999988777666666  555555554       455656555553

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=86.66  E-value=1.7  Score=46.75  Aligned_cols=61  Identities=21%  Similarity=0.406  Sum_probs=46.9

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEEcCCCCCCChHHHHHHHH
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVTDASGNPVDPKIVDSIQH  389 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~d~~g~~l~~~~~~~l~~  389 (437)
                      ++.+=+.-.|+||.++.|+..|.+++|||...++..  -|+++.-++.+.    ++++++.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D----~~v~~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD----DPVPEEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC----CCCCHHHHHHHhc
Confidence            456666779999999999999999999999998875  357777666663    3666666666653

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.64  E-value=4.9  Score=41.15  Aligned_cols=66  Identities=20%  Similarity=0.241  Sum_probs=46.1

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-----cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722          114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-----HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN  186 (437)
Q Consensus       114 ~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-----~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (437)
                      .....+.|.-+|+||.|++++..++++|.||.+..-..     ..+.+.-.+.+...       +++..+.|.+.|.+
T Consensus       303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD  373 (380)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            34458999999999999999999999999999885442     12344445555442       24455566666553

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.55  E-value=3.7  Score=42.09  Aligned_cols=33  Identities=12%  Similarity=0.179  Sum_probs=30.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEE
Q 013722          248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTV  280 (437)
Q Consensus       248 t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i  280 (437)
                      ..+.|..+|+||.|.+++..+.+.|.||.+..-
T Consensus       306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~  338 (380)
T TIGR01127       306 VRIETVLPDRPGALYHLLESIAEARANIVKIDH  338 (380)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEe
Confidence            388999999999999999999999999997743

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK09084 aspartate kinase III; Validated

Probab=86.54  E-value=10  Score=39.91  Aligned_cols=104  Identities=16%  Similarity=0.225  Sum_probs=63.2

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722           25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL  101 (437)
Q Consensus        25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  101 (437)
                      .+...|+|.+.   +.+|.++++...|+++|++|.--.  + ... --.|.|...+-..-......+++.+.|....   
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--s-se~-sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~---  376 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--T-SEV-SVSLTLDTTGSTSTGDTLLTQALLTELSQLC---  376 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--c-cCc-EEEEEEechhhhhhhhHHHHHHHHHHHhcCC---
Confidence            35667888654   689999999999999999998554  2 221 2246664321111000011233333333211   


Q ss_pred             cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCC
Q 013722          102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSC  142 (437)
Q Consensus       102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~  142 (437)
                           .+.  -..+...|++.|.   ++||+++++..+|+..++
T Consensus       377 -----~i~--~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        377 -----RVE--VEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             -----eEE--EECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence                 121  2336778888886   789999999999987543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=86.52  E-value=2.2  Score=43.67  Aligned_cols=49  Identities=16%  Similarity=0.203  Sum_probs=38.8

Q ss_pred             ceEEEEEEeC-CCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722          115 EYTSIELTGT-DRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD  164 (437)
Q Consensus       115 ~~t~i~v~~~-DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~  164 (437)
                      ..+.+.+.-+ |+||-|++|+.+|+.+|+||.+.++ .......-.|+|.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence            4677777776 9999999999999999999999999 33322333388876

>PRK08198 threonine dehydratase; Provisional

Probab=86.51  E-value=5.2  Score=41.35  Aligned_cols=38  Identities=21%  Similarity=0.475  Sum_probs=33.7

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722          113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW  150 (437)
Q Consensus       113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~  150 (437)
                      ......+.|.-+|+||-|+++...++.+|.||.+....
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            34556899999999999999999999999999988765

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=86.38  E-value=3.7  Score=40.32  Aligned_cols=54  Identities=19%  Similarity=0.245  Sum_probs=42.8

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCce-eEEEEEEEeCCCCCc
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR-AAALLHVKDQSSGCA  170 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~-~~d~F~V~~~~~g~~  170 (437)
                      ..|.+-+..+|+||-|+++-++|+.+|||+......-.... ..=.|||.-  .|..
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc
Confidence            47788888889999999999999999999999998764444 455666655  3543

>PRK06382 threonine dehydratase; Provisional

Probab=86.24  E-value=11  Score=39.18  Aligned_cols=68  Identities=22%  Similarity=0.164  Sum_probs=47.7

Q ss_pred             CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee----c-CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013722          324 EGLELELYTDDRFGLLSDITRILREYGLCIRRAEIST----M-GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTIL  396 (437)
Q Consensus       324 ~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T----~-g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~  396 (437)
                      +.+.+.|.-+|+||-|++|++.|.++|+||.+.....    . -+.+.=+|.|...     +++..++|.+.|.+.-.
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~~Gy  401 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALREMGY  401 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHHCCC
Confidence            3578999999999999999999999999998766531    1 1234445555321     23444677777776433

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=86.00  E-value=6.8  Score=43.30  Aligned_cols=86  Identities=13%  Similarity=0.142  Sum_probs=56.6

Q ss_pred             HHHhhccCCCEEEEeeCC---CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeCCCCCC
Q 013722            6 AKLIRRMNPPRVVIDNDV---CEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD-GGYLMDVFYVTDINGQKI   81 (437)
Q Consensus         6 ~~~~~~~~~~~V~v~~~~---~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~   81 (437)
                      .++..+.+.-.|.+.=..   ..-.+.|.|.+.||+|+|++++.+|+..+.||......+. ++.+.-.|.+.-      
T Consensus       603 ~~~~~~~per~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------  676 (701)
T COG0317         603 LQLAGHAPERVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------  676 (701)
T ss_pred             HHhhhcCcceEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------
Confidence            344444433344444222   2345699999999999999999999999999999988774 444443344422      


Q ss_pred             CcHHHHHHHHHHHhhc
Q 013722           82 GDQATISYIKTTVETN   97 (437)
Q Consensus        82 ~~~~~~~~l~~~L~~~   97 (437)
                      .+-..+..|...|...
T Consensus       677 ~n~~~L~~i~~~l~~~  692 (701)
T COG0317         677 KNLNHLGRVLARLKQL  692 (701)
T ss_pred             CcHHHHHHHHHHHhcC
Confidence            2234666677776654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=85.64  E-value=1.5  Score=47.01  Aligned_cols=61  Identities=18%  Similarity=0.368  Sum_probs=47.2

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHH
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQH  389 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~  389 (437)
                      ++.+=+.-.||||.+..|+..|.+++|||...++...  |++|.-++.+.    ++++++.+++|++
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D----~~v~~~~l~~i~~  513 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD----QPVPDEVLEEIKA  513 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC----CCCCHHHHHHHhc
Confidence            4566667799999999999999999999988888644  67777677663    3667666666664

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=85.58  E-value=35  Score=35.96  Aligned_cols=108  Identities=12%  Similarity=0.178  Sum_probs=69.1

Q ss_pred             CCeEEEEEEeCC---CccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722           25 EHATVIQVDSVN---RHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL  101 (437)
Q Consensus        25 ~~~~~I~V~~~D---rpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  101 (437)
                      .+...|+|..+.   .+|.++++...|+++|+||.--........  -+|.+...+.     +...+.+++...+...  
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~--  375 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA--  375 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence            356677776543   459999999999999999974333222222  3466632211     1233444444432211  


Q ss_pred             cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEE
Q 013722          102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                           ++  ....+...|.+++.   ..||..+++..+|++.++||....
T Consensus       376 -----~v--~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         376 -----EV--EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             -----eE--EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence                 11  22335667777764   678999999999999999999877

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=85.35  E-value=28  Score=39.56  Aligned_cols=102  Identities=10%  Similarity=0.068  Sum_probs=68.4

Q ss_pred             CCeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhc
Q 013722          245 RDYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERR  321 (437)
Q Consensus       245 ~~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~  321 (437)
                      .+.+.|.|.+.   .+||+.+++..+|.+.|+||......+ .... -+|.|...+         .+...+.|.+.+...
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d---------~~~av~~L~~~f~~e  381 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSD---------AAKAKRALEEEFALE  381 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHH---------HHHHHHHHHHHHHHH
Confidence            45667888754   679999999999999999997664432 2222 245555432         223333344433211


Q ss_pred             -----c------CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEEEE
Q 013722          322 -----A------SEGLELELYTD---DRFGLLSDITRILREYGLCIRRAE  357 (437)
Q Consensus       322 -----~------~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~  357 (437)
                           .      ..-.+|.|.+.   ++||+++++-.+|.+.||||..-.
T Consensus       382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence                 1      12357888775   789999999999999999998654

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=85.14  E-value=3.3  Score=35.17  Aligned_cols=49  Identities=10%  Similarity=0.069  Sum_probs=39.3

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCce-eEEEEEEEe
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR-AAALLHVKD  164 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~-~~d~F~V~~  164 (437)
                      .+.+.+..+|+||-|+++-..|+.+|+|+...+.....+. ..=.|+|.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            4667777799999999999999999999999988774433 445667765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=84.98  E-value=7.1  Score=30.28  Aligned_cols=61  Identities=10%  Similarity=0.233  Sum_probs=40.1

Q ss_pred             EEEEE---eCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHH-HHHHHHHhh
Q 013722          327 ELELY---TDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIV-DSIQHQIGR  393 (437)
Q Consensus       327 ~iev~---~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~-~~l~~~L~~  393 (437)
                      .|+|.   .+++||++++|-.+|+++||+|..-  +| ++ ..=.|.|..  ..+..++.. ++|.+.|.+
T Consensus         3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI--~~-s~-~~iSftv~~--~d~~~~~~~~~~l~~~l~~   67 (75)
T cd04932           3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI--TT-SE-ISVALTLDN--TGSTSDQLLTQALLKELSQ   67 (75)
T ss_pred             EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE--ee-cC-CEEEEEEec--cccchhHHHHHHHHHHHHh
Confidence            45553   4788999999999999999999886  33 33 333566643  222222333 367777776

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=84.70  E-value=2.6  Score=42.94  Aligned_cols=48  Identities=21%  Similarity=0.317  Sum_probs=40.6

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      .+.+.|.-+||||-|+.|+..|.+.||||.+-+|.-.-+....+..++
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            378999999999999999999999999999999965555555566664

>TIGR00657 asp_kinases aspartate kinase

Probab=84.64  E-value=24  Score=36.90  Aligned_cols=108  Identities=20%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             CeEEEEEEeCC-C-ccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccC
Q 013722           26 HATVIQVDSVN-R-HGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNS  103 (437)
Q Consensus        26 ~~~~I~V~~~D-r-pGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  103 (437)
                      +...|+|.+.+ . +|.++++...|+++|++|......+.. .. -.|.|...+         .+...+.|......  .
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~---------~~~a~~~L~~~~~~--~  367 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKED---------ADQAKTLLKSELNL--S  367 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHH---------HHHHHHHHHHHHHh--c
Confidence            45667777544 3 799999999999999999865433322 11 235553211         11112222211000  0


Q ss_pred             cceeeeecCCCceEEEEEEe---CCCcchHHHHHHHHHhCCCeEEEEE
Q 013722          104 MRSSVGVVPSKEYTSIELTG---TDRPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       104 ~~r~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                      .-..+  ....+...+++.+   .++||++++|..+|+.+|+||....
T Consensus       368 ~~~~I--~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       368 ALSSV--EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             CcceE--EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            00111  2234677888865   4789999999999999999997765

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=84.32  E-value=1.1e+02  Score=37.35  Aligned_cols=159  Identities=16%  Similarity=0.107  Sum_probs=99.5

Q ss_pred             CCcEEEEEecCCCCeeEEEEEeCCC---CchHHHHHHHHHhC-CCeEEEEEEEe-cCCeEEEEEEEEccCCCCCCcHHHH
Q 013722          233 SRPHVTILDCSDRDYTAVTIRSKDR---PKLLFDTVCCLTDM-QYVVYHGTVVT-GRMEAYQEYYIKHVDGFPISSEAER  307 (437)
Q Consensus       233 ~~p~V~v~~~~~~~~t~V~V~~~Dr---pgL~~~v~~~L~~~-~lnI~~a~i~t-~~g~ald~F~V~~~~g~~~~~~~~~  307 (437)
                      ....+.++......+.-+.||.|-.   ..+-.++...|.+. +-...+-.... ....+.--|++....+.....  ..
T Consensus       327 ~rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~--d~  404 (1528)
T PF05088_consen  327 RRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDI--DV  404 (1528)
T ss_pred             CceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCC--CH
Confidence            4567777888888888888887743   34666676666554 33444444333 345777788888777655221  12


Q ss_pred             HHHHHHHHHH-----------Hh------------------------hcc-C----------------------------
Q 013722          308 QRVMACLEAA-----------IE------------------------RRA-S----------------------------  323 (437)
Q Consensus       308 ~~l~~~L~~~-----------l~------------------------~~~-~----------------------------  323 (437)
                      ++|++.|.++           |.                        ..+ |                            
T Consensus       405 ~~le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~  484 (1528)
T PF05088_consen  405 EALEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAG  484 (1528)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCC
Confidence            3333333222           10                        000 0                            


Q ss_pred             ---CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec----C-CeEEEEEEEEcCCCCCCCh-HHHHHHHHHHhh
Q 013722          324 ---EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM----G-RKVKDTFFVTDASGNPVDP-KIVDSIQHQIGR  393 (437)
Q Consensus       324 ---~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~----g-~~a~D~F~v~d~~g~~l~~-~~~~~l~~~L~~  393 (437)
                         ....+.|....+|..|++|.-+|..+|+.|....-..+    | ..-...|++....+..++. +..+.+.+++..
T Consensus       485 ~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~  563 (1528)
T PF05088_consen  485 AGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEA  563 (1528)
T ss_pred             CCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHH
Confidence               02578999999999999999999999999987654333    2 2456789998777666553 344555555554

>PRK06349 homoserine dehydrogenase; Provisional

Probab=84.09  E-value=5.1  Score=41.83  Aligned_cols=52  Identities=19%  Similarity=0.278  Sum_probs=41.4

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722          113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD  164 (437)
Q Consensus       113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~  164 (437)
                      ....+.|.+...|+||.|++|+++|.+++++|.+.......+....++.++.
T Consensus       345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            3456789999999999999999999999999998866543334556666776

>PRK08818 prephenate dehydrogenase; Provisional

Probab=83.99  E-value=2.2  Score=43.73  Aligned_cols=47  Identities=19%  Similarity=0.276  Sum_probs=36.1

Q ss_pred             CcEEEEEeC-CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          325 GLELELYTD-DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       325 ~~~iev~~~-DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      .+.|.+.-+ |+||-|++|..+|+.+||||.+-.+ .....-+-.|+|.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~  342 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIG  342 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEE
Confidence            356777776 9999999999999999999999888 2222222348884

>PRK12483 threonine dehydratase; Reviewed

Probab=83.84  E-value=47  Score=35.74  Aligned_cols=144  Identities=12%  Similarity=0.061  Sum_probs=92.4

Q ss_pred             CCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH-Hh---
Q 013722          245 RDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGR-MEAYQEYYIKHVDGFPISSEAERQRVMACLEAA-IE---  319 (437)
Q Consensus       245 ~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~-g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~-l~---  319 (437)
                      .....+.|..|||||-|.+++..|...  ||.+..-.... +.+. .++..+..+.    +..+++|.+.|++. +.   
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAH-LFVGVQTHPR----HDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeE-EEEEEEeCCh----hhhHHHHHHHHHHCCCCeEE
Confidence            455688899999999999999999988  88876554432 3332 3333332221    11236666676553 10   


Q ss_pred             -----------h-----ccC---CCcEEEEEeCCCcchHHHHHHHHHH-cCCeEEEEEeeecCCeEEEEEEEEcCCCCCC
Q 013722          320 -----------R-----RAS---EGLELELYTDDRFGLLSDITRILRE-YGLCIRRAEISTMGRKVKDTFFVTDASGNPV  379 (437)
Q Consensus       320 -----------~-----~~~---~~~~iev~~~DrpGLL~~I~~~l~~-~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l  379 (437)
                                 |     +.+   +.-.+.|+-+.|||=|-++++.|.. .+|+-++=+.  .|...-.+|.=..     +
T Consensus       416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~--~~~~~a~v~vgi~-----~  488 (521)
T PRK12483        416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRN--HGAADGRVLAGLQ-----V  488 (521)
T ss_pred             CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecC--CCCCceEEEEEEe-----e
Confidence                       0     111   2358999999999999999999997 4777766655  3554445554222     1


Q ss_pred             ChHHHHHHHHHHhhccccccccC
Q 013722          380 DPKIVDSIQHQIGRTILQVKGNL  402 (437)
Q Consensus       380 ~~~~~~~l~~~L~~~~~~~~~~~  402 (437)
                      .+++.+++.+.|.+.-..+.|..
T Consensus       489 ~~~~~~~~~~~l~~~gy~~~d~t  511 (521)
T PRK12483        489 PEDERAALDAALAALGYPYWEET  511 (521)
T ss_pred             ChhHHHHHHHHHHHCCCCeEECC
Confidence            23566888888888766665543

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=83.20  E-value=6.6  Score=30.45  Aligned_cols=56  Identities=18%  Similarity=0.379  Sum_probs=38.1

Q ss_pred             CCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          333 DDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       333 ~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      ++.||++++|-++|+++||+|..--  + ++ ..=.|.|.... .-+.++..++|.++|.+
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence            5789999999999999999999863  3 33 22256554322 11344456777777776

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=83.17  E-value=36  Score=39.01  Aligned_cols=104  Identities=11%  Similarity=0.109  Sum_probs=64.8

Q ss_pred             CCeEEEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722           25 EHATVIQVD---SVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL  101 (437)
Q Consensus        25 ~~~~~I~V~---~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  101 (437)
                      ++.+.|+|.   ..+.+|.++++...|+++|++|.--  .+. +.. -+|.+.+.+  .....+.++.+...|....   
T Consensus       320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~ss-e~s-is~~i~~~~--~~~~~~~~~~l~~~l~~~~---  390 (861)
T PRK08961        320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSS-ETN-VTVSLDPSE--NLVNTDVLAALSADLSQIC---  390 (861)
T ss_pred             CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcC-CCE-EEEEEcccc--ccchHHHHHHHHHHHhhcC---
Confidence            356677775   4468999999999999999999643  232 211 135553321  1101123444444444311   


Q ss_pred             cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeE
Q 013722          102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSV  144 (437)
Q Consensus       102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I  144 (437)
                           .+.  ...+...|+|+|.   ++||+++++..+|+..|+++
T Consensus       391 -----~i~--~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        391 -----RVK--IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             -----cEE--EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence                 111  1235678899885   78999999999999977655

>TIGR00657 asp_kinases aspartate kinase

Probab=83.03  E-value=26  Score=36.64  Aligned_cols=102  Identities=18%  Similarity=0.182  Sum_probs=64.0

Q ss_pred             CCeeEEEEEeCCC--CchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhcc
Q 013722          245 RDYTAVTIRSKDR--PKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRA  322 (437)
Q Consensus       245 ~~~t~V~V~~~Dr--pgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~  322 (437)
                      .+...|+|.+.+-  +|.++++...|.+.|+||......+. ... -+|.|...+         .++..+.|....+...
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e~s-Is~~I~~~~---------~~~a~~~L~~~~~~~~  368 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-ETS-ISFTVDKED---------ADQAKTLLKSELNLSA  368 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-Cce-EEEEEEHHH---------HHHHHHHHHHHHHhcC
Confidence            3455666665433  79999999999999999987653222 212 245554432         1122222222111111


Q ss_pred             -------CCCcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEEE
Q 013722          323 -------SEGLELELYT---DDRFGLLSDITRILREYGLCIRRAE  357 (437)
Q Consensus       323 -------~~~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~  357 (437)
                             ..-..|.|.+   .++||++++|.++|++.||||....
T Consensus       369 ~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                   1235688865   4789999999999999999998765

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=82.25  E-value=3.4  Score=44.39  Aligned_cols=51  Identities=20%  Similarity=0.358  Sum_probs=39.6

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEE
Q 013722          113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVK  163 (437)
Q Consensus       113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~  163 (437)
                      ....+.+-+...|+||.+..|+..|.++++||...++..  .++.+.-++.+.
T Consensus       449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D  501 (526)
T PRK13581        449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD  501 (526)
T ss_pred             eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC
Confidence            335566667779999999999999999999999999876  345555555543

>PRK09181 aspartate kinase; Validated

Probab=81.81  E-value=15  Score=38.94  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=79.3

Q ss_pred             CeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-c
Q 013722          246 DYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER-R  321 (437)
Q Consensus       246 ~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-~  321 (437)
                      +.+.|+|.+.   +.+|+.+++...|.+.++||..  +.+. . .-.+|.+...  .     ...+++.+.|++.+.. .
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss-~-~sis~~v~~~--~-----~~~~~~~~~L~~~~~~~~  396 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATN-A-NTITHYLWGS--L-----KTLKRVIAELEKRYPNAE  396 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEec-C-cEEEEEEcCC--h-----HHHHHHHHHHHHhcCCce
Confidence            4566677543   6899999999999999999983  2222 1 1124555442  1     1334444555543321 1


Q ss_pred             --cCCCcEEEEEeCC--CcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013722          322 --ASEGLELELYTDD--RFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTIL  396 (437)
Q Consensus       322 --~~~~~~iev~~~D--rpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~  396 (437)
                        ...-.+|.|.+..  +||+.+++-.+|.+.||||..---.+-  ...=.|.|.        .++.++.-+.|++..+
T Consensus       397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~s--e~~Is~vV~--------~~d~~~Av~~lH~~f~  465 (475)
T PRK09181        397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMR--QVNMQFVVD--------EDDYEKAICALHEALV  465 (475)
T ss_pred             EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCC--cceEEEEEe--------HHHHHHHHHHHHHHHh
Confidence              1334678888765  899999999999999999976444221  112235553        2344555566666544

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=81.65  E-value=16  Score=26.53  Aligned_cols=34  Identities=15%  Similarity=0.287  Sum_probs=27.7

Q ss_pred             EEEEEe---CCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          118 SIELTG---TDRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       118 ~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                      .|++.|   .+.||++++|..+|+++|+++......+
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~   39 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS   39 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            466776   4789999999999999999998775433

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PLN02317 arogenate dehydratase

Probab=81.38  E-value=5.8  Score=40.75  Aligned_cols=52  Identities=12%  Similarity=0.199  Sum_probs=40.0

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCe---------------EEEEEEEEcCCCCC
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRK---------------VKDTFFVTDASGNP  378 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~---------------a~D~F~v~d~~g~~  378 (437)
                      |.|-+.-.|+||.|+++-.+|+.+|||+.+-.-.....+               -+=.||| |.+|..
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~  350 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASM  350 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCc
Confidence            566667789999999999999999999998877665443               2237888 455654

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=81.35  E-value=40  Score=35.57  Aligned_cols=117  Identities=11%  Similarity=0.065  Sum_probs=70.0

Q ss_pred             CCeeEEEEEeCC---CCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh-h
Q 013722          245 RDYTAVTIRSKD---RPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE-R  320 (437)
Q Consensus       245 ~~~t~V~V~~~D---rpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~-~  320 (437)
                      .+.+.|+|..+.   ++|..+++...|.+.|+||..-........  -+|.+...+..     ...+.+.+...+.+. -
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~-----~a~~~l~~~~~~~~~~v  377 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAP-----RALRALLEEKLELLAEV  377 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHH-----HHHHHHHHHHhhhcceE
Confidence            455677776443   459999999999999999986544332222  34555443321     122222222222111 0


Q ss_pred             ccCC-CcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          321 RASE-GLELELYT---DDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       321 ~~~~-~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      ...+ -.+|.+.+   ...||..+.+.++|++.||||.+..  +  ....=.|.|.
T Consensus       378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--s--Se~~Is~vV~  429 (447)
T COG0527         378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--S--SEISISFVVD  429 (447)
T ss_pred             EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--c--CCceEEEEEc
Confidence            0111 23566665   4678999999999999999999876  1  1233357664

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=80.69  E-value=7.9  Score=39.96  Aligned_cols=50  Identities=16%  Similarity=0.163  Sum_probs=41.1

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEe
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKD  164 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~  164 (437)
                      ..|.+-+..+|+||.|+++-..|+.+|+|+.+.+..- .++...=.|||.-
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~  346 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV  346 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence            3566777778999999999999999999999999885 4445666777776

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=80.65  E-value=14  Score=27.11  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=27.5

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEeee
Q 013722          327 ELELYTD---DRFGLLSDITRILREYGLCIRRAEIST  360 (437)
Q Consensus       327 ~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I~T  360 (437)
                      .|.+.+.   ++||+++++.++|.+.|+++...--++
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            4555554   789999999999999999998775544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=80.60  E-value=19  Score=26.29  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=28.0

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          118 SIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       118 ~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                      .|++.|.   ++||+++++..+|++.|+++......+
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            5666665   789999999999999999998775544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=80.12  E-value=13  Score=38.43  Aligned_cols=66  Identities=12%  Similarity=0.145  Sum_probs=46.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-----eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-----DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN   97 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-----~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~   97 (437)
                      ....+.|.-+|+||-|++++..+++.|.||.+-....     ..+.+.-.+.| +..     +++..+.|.+.|++.
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~i-e~~-----~~~~~~~l~~~L~~~  396 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTL-ETR-----GPEHIEEILDALRDA  396 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEE-EeC-----CHHHHHHHHHHHHHC
Confidence            4568999999999999999999999999999887753     22444333333 221     224556777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	437
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1u8s_A	192	Glycine cleavage system transcriptional repressor,	3e-05
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 47/316 (14%), Positives = 93/316 (29%), Gaps = 91/316 (28%)

Query: 160 LHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFA 219
              KD      ++D  + + + K   + +     + +   ++S    L       Q    
Sbjct: 33  FDCKD------VQDMPKSI-LSKEEIDHI-----IMSKD-AVSGTLRLFWTLLSKQEEMV 79

Query: 220 DRDFERLDCVNYN-------------SRPHVTILDCSDRDYTAVTIRSKD---RPKL--- 260
            +  E +  +NY              S      ++  DR Y    + +K    R +    
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 261 LFDTVCCLTDMQYVVYHG------TVVTGRMEAYQEYYIKHVDGFPIS--SEAERQRVMA 312
           L   +  L   + V+  G      T V    +    Y ++    F I   +         
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 313 CLEA---------------------------AIERRASEGLELELYTDDRFGL--LSDI- 342
            LE                            +I+      L+ + Y +    L  L ++ 
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQ 254

Query: 343 -TRILREYGL-CIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKG 400
             +    + L C  +  ++T  R  + T F+     +      +    H +  T  +VK 
Sbjct: 255 NAKAWNAFNLSC--KILLTT--RFKQVTDFL-----SAATTTHISLDHHSMTLTPDEVKS 305

Query: 401 ----NLNTPP-KLPQE 411
                L+  P  LP+E
Sbjct: 306 LLLKYLDCRPQDLPRE 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 7e-06
 Identities = 55/446 (12%), Positives = 112/446 (25%), Gaps = 168/446 (37%)

Query: 3   DEFAKLIRRMNPPR--VVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLN---LVITK 57
            E  +L++        +V+  +V  +A                   F  +L+   L+ T+
Sbjct: 232 AELRRLLKSKPYENCLLVLL-NVQ-NAKAWNA--------------F--NLSCKILLTTR 273

Query: 58  AYISSDGGYLMDVFYVTDINGQKIGDQATISYIK---TTVETNASFLNSMRSSVGVVPSK 114
                          VTD          ++ +     T  E  +  L  +      +P  
Sbjct: 274 -----FKQ-------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR- 320

Query: 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-------NARAAALLH-----V 162
                E+  T+ P  LS ++  + D   +    + W H           ++L        
Sbjct: 321 -----EVLTTN-PRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 163 KDQSSGCAI--EDQK---RLLKI------------------KKLLCNVLRTNGDLRTPSM 199
           +      ++          LL +                  K  L         +  PS+
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 200 SISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPK 259
            +     L  E  LH+ +    +  +    +    P+   LD     Y            
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY---LD----QY------------ 472

Query: 260 LLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE 319
             +          ++ +H       +E  +         F                    
Sbjct: 473 -FY---------SHIGHH----LKNIEHPERM-----TLFR------------------- 494

Query: 320 RRASEGLELELYTDDRF----------------GLLSDITRILREYGLCIRRAEISTMGR 363
                     ++ D RF                 +L+ + + L+ Y   I   +     R
Sbjct: 495 ---------MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDND-PKYER 543

Query: 364 KVKDTF-FVTDASGNPVDPKIVDSIQ 388
            V     F+     N +  K  D ++
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLR 569

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 12/134 (8%)

Query: 29  VIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATIS 88
           VI     +R GI  EV++ +      I  + I+  G     +  ++       G  + I+
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS-------GSPSNIT 60

Query: 89  YIKTTVETNASFLN-----SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCS 143
            ++TT+       +        S            + +   D+ GL  + +         
Sbjct: 61  RVETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIG 120

Query: 144 VVSAEIWTHNARAA 157
           + S    T +    
Sbjct: 121 MASLSAQTISKDKL 134

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 6/46 (13%), Positives = 21/46 (45%)

Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHV 162
             I + G D+ G+ ++++ V++    ++ +  +   +      L +
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.75
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.75
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.67
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.67
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.8
2f06_A	144	Conserved hypothetical protein; structural genomic	98.61
2f06_A	144	Conserved hypothetical protein; structural genomic	98.59
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.55
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.21
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.11
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.98
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.93
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.86
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.64
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.61
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.49
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.49
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.47
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.43
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.35
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.3
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.2
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.05
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.01
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.99
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.97
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.94
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.93
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.91
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.9
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.88
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.83
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.8
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.64
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.56
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.44
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.44
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.34
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.01
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.84
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.83
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.75
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.73
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.59
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.49
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.02
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.6
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.57
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	92.09
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	92.01
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	91.91
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	90.96
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	90.62
3luy_A	329	Probable chorismate mutase; structural genomics, A	89.3
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	88.99
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	88.95
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	88.95
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	88.71
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	88.14
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	88.05
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	87.21
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	86.96
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.29
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	83.94
3luy_A	329	Probable chorismate mutase; structural genomics, A	83.75
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	83.08

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.75  E-value=1.8e-17  Score=152.88  Aligned_cols=157  Identities=16%  Similarity=0.165  Sum_probs=116.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccC---ccc
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNAS---FLN  102 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~---~~~  102 (437)
                      ..++|+|+|+|||||+++++++|+++|+||++|++++.+|.+.-.|.|..+..   .....++.|+++|.....   ...
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHHhcCCeE
Confidence            45799999999999999999999999999999999976554433788864421   222467788888876431   110


Q ss_pred             CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEEEeCCCCCcCCCHHHHHHH
Q 013722          103 SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHVKDQSSGCAIEDQKRLLKI  180 (437)
Q Consensus       103 ~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l  180 (437)
                      .....-. ......++|+|.|+||||++++|+++|+++|+||.+++..|.+  ++..+.|+++.. .+.+  ++.. +.|
T Consensus        81 ~~~~~~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~l  155 (195)
T 2nyi_A           81 SVAERHV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QEV  155 (195)
T ss_dssp             CC----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HHH
T ss_pred             EEEeCCc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HHH
Confidence            0100001 3344678999999999999999999999999999999999976  667889988773 3333  2445 788


Q ss_pred             HHHHhhhhcc
Q 013722          181 KKLLCNVLRT  190 (437)
Q Consensus       181 ~~~L~~aL~g  190 (437)
                      +++|......
T Consensus       156 ~~~l~~~a~~  165 (195)
T 2nyi_A          156 VTALSRVEEE  165 (195)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888865543

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.75  E-value=4.3e-18  Score=157.08  Aligned_cols=142  Identities=15%  Similarity=0.117  Sum_probs=111.3

Q ss_pred             CeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh----
Q 013722          246 DYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGR-MEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER----  320 (437)
Q Consensus       246 ~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~-g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~----  320 (437)
                      ..++|+|+||||||||++++++|+++|+||.++++++.. ++++ .|.+..+..   ....+++.|++.|.+.+.+    
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~   79 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK---DGKLIQSALESALPGFQISTRRA   79 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS---SSHHHHHHHHHHSTTCEEEEEEC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc---cchhHHHHHHHHHHHHHHhcCCe
Confidence            357899999999999999999999999999999999865 5777 777765432   2233567777777654321    


Q ss_pred             -cc--------CCCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHH
Q 013722          321 -RA--------SEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQH  389 (437)
Q Consensus       321 -~~--------~~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~  389 (437)
                       ++        ...++|+|.++||||++++|+++|+++|+||..++..|.+  +++.|.|+++...+.+ .+.. ++|++
T Consensus        80 ~~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~  157 (195)
T 2nyi_A           80 SSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVT  157 (195)
T ss_dssp             CCC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHH
T ss_pred             EEEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHH
Confidence             01        1258999999999999999999999999999999999998  8889999997654433 2234 67777


Q ss_pred             HHhh
Q 013722          390 QIGR  393 (437)
Q Consensus       390 ~L~~  393 (437)
                      +|..
T Consensus       158 ~l~~  161 (195)
T 2nyi_A          158 ALSR  161 (195)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6664

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.67  E-value=8.3e-16  Score=141.19  Aligned_cols=138  Identities=15%  Similarity=0.174  Sum_probs=105.6

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCC-eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-----
Q 013722          247 YTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRM-EAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER-----  320 (437)
Q Consensus       247 ~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g-~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-----  320 (437)
                      ...|+|+|+||||++++++++|++.|+||.++++++..| +.+ .|.|..+.       ...+.|++.|.+...+     
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~-~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTL-LMLISGSP-------SNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEECH-------HHHHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEE-EEEEecCC-------CCHHHHHHHHHHHHHhcCCEE
Confidence            468999999999999999999999999999999998765 555 77776532       3677888888765421     


Q ss_pred             ---ccC--------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCC----eEEEEEEEEcCCCCCCChHHHH
Q 013722          321 ---RAS--------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGR----KVKDTFFVTDASGNPVDPKIVD  385 (437)
Q Consensus       321 ---~~~--------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~----~a~D~F~v~d~~g~~l~~~~~~  385 (437)
                         +.+        ..++|+|.++||||++++|+++|+++|+||..++..|.++    +..+.|+++..-+.+ .+...+
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~  156 (192)
T 1u8s_A           78 MMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLM  156 (192)
T ss_dssp             EEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHH
T ss_pred             EEEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHH
Confidence               111        2479999999999999999999999999999999999984    689999997643322 122445


Q ss_pred             HHHHHHhh
Q 013722          386 SIQHQIGR  393 (437)
Q Consensus       386 ~l~~~L~~  393 (437)
                      +|+++|.+
T Consensus       157 ~l~~~l~~  164 (192)
T 1u8s_A          157 QLQEEFDA  164 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666654

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.67  E-value=1.6e-15  Score=139.32  Aligned_cols=155  Identities=14%  Similarity=0.180  Sum_probs=110.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhcc---Cccc
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNA---SFLN  102 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~---~~~~  102 (437)
                      ...+|+|+|+||||++++++++|+++|+||.++++++.+|.+.-.|.|..+.       ...+.|++.|....   ....
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEE
Confidence            3578999999999999999999999999999999998777666588885431       24566666665432   1110


Q ss_pred             Cccee--eeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCc----eeEEEEEEEeCCCCCcCCCHHH
Q 013722          103 SMRSS--VGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNA----RAAALLHVKDQSSGCAIEDQKR  176 (437)
Q Consensus       103 ~~~r~--v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~----~~~d~F~V~~~~~g~~~~~~~~  176 (437)
                      ...+.  -........++|+|.++||||++++|+++|+++|+||.+++..|.+.    +..+.|+++.. .+.+  ++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~~~~  154 (192)
T 1u8s_A           78 MMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--SGCN  154 (192)
T ss_dssp             EEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--TTSC
T ss_pred             EEEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--CCCC
Confidence            00000  00133446789999999999999999999999999999999999764    57888988762 3322  2334


Q ss_pred             HHHHHHHHhhhhcc
Q 013722          177 LLKIKKLLCNVLRT  190 (437)
Q Consensus       177 ~~~l~~~L~~aL~g  190 (437)
                      .+.|+++|.+....
T Consensus       155 ~~~l~~~l~~~~~~  168 (192)
T 1u8s_A          155 LMQLQEEFDALCTA  168 (192)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            57788888865544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.80  E-value=1.1e-07  Score=96.77  Aligned_cols=151  Identities=13%  Similarity=0.049  Sum_probs=101.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhcc---Cccc
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNA---SFLN  102 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~---~~~~  102 (437)
                      ....|+|.|+||||+.+.++++|+++|+||.+.+.++.+|++.-...+.-+.+.     ...+.|+++|....   ....
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-----ADGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-----HTSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-----CCHHHHHHHHHHHHHHcCeEE
Confidence            467999999999999999999999999999999999988877554445322111     01245666554431   1100


Q ss_pred             Cc---ceeeeecCCCceEEEEEEeCC-CcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHH
Q 013722          103 SM---RSSVGVVPSKEYTSIELTGTD-RPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLL  178 (437)
Q Consensus       103 ~~---~r~v~~~~~~~~t~i~v~~~D-rpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~  178 (437)
                      ..   .... ......+..+++.+.| +||++.+|+.+++.+|+||...+..+......-.|.|..+    +. +   ..
T Consensus        86 ~~~~~~~~~-~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~----~~-~---~~  156 (415)
T 3p96_A           86 SIERSDDVP-IIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVP----PG-A---DE  156 (415)
T ss_dssp             EEEECSSSC-SSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC----TT-C---HH
T ss_pred             EEEECCccc-ccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCC----CC-C---HH
Confidence            00   0000 0133468899999999 9999999999999999999998877743334444666542    11 2   35


Q ss_pred             HHHHHHhhhhcc
Q 013722          179 KIKKLLCNVLRT  190 (437)
Q Consensus       179 ~l~~~L~~aL~g  190 (437)
                      .+++.+.+.+..
T Consensus       157 ~l~~~l~~l~~~  168 (415)
T 3p96_A          157 ALRTALNRVSSE  168 (415)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh
Confidence            566666655543

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.61  E-value=1.6e-06  Score=75.15  Aligned_cols=129  Identities=8%  Similarity=0.004  Sum_probs=84.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhccCCCcE
Q 013722          248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLE  327 (437)
Q Consensus       248 t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~  327 (437)
                      -+++|..+|+||.++++++.|++.|+||....+....++..-.|.+.+           .++.++.|++. .-......+
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d-----------~~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD-----------PDKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC-----------HHHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCC-----------HHHHHHHHHHc-CCeEeeeeE
Confidence            368889999999999999999999999998877644333333444211           12233334331 001111246


Q ss_pred             EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722          328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV  398 (437)
Q Consensus       328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~  398 (437)
                      +-+..+|+||.+++|+++|+++||||.+......+.++.=.|.+.          ..++..+.|+++-+.|
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~----------d~~~A~~~L~~~g~~v  135 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS----------NMDKCIEVLKEKKVDL  135 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES----------CHHHHHHHHHHTTCEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeC----------CHHHHHHHHHHcCCEE
Confidence            777889999999999999999999998766642344555445441          2344455666654444

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.59  E-value=1.5e-06  Score=75.32  Aligned_cols=113  Identities=18%  Similarity=0.216  Sum_probs=76.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCcce
Q 013722           27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRS  106 (437)
Q Consensus        27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~r  106 (437)
                      ..+|+|..+|+||.++++++.|++.|+||..-.+....+..+-.|.+.        +.   +..++.|... .+.    .
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d~---~~a~~~L~~~-G~~----v   69 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------DP---DKAYKALKDN-HFA----V   69 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------CH---HHHHHHHHHT-TCC----E
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------CH---HHHHHHHHHc-CCe----E
Confidence            468999999999999999999999999999877753222222224321        11   2334444432 110    0


Q ss_pred             eeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEE
Q 013722          107 SVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHV  162 (437)
Q Consensus       107 ~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V  162 (437)
                             ....++.+..+|+||.+++|+++|+++|+||.....+..+++..-+|.+
T Consensus        70 -------~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           70 -------NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             -------EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             -------eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence                   0124677788999999999999999999999887766333444444433

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.55  E-value=2.6e-06  Score=86.63  Aligned_cols=122  Identities=11%  Similarity=0.008  Sum_probs=85.2

Q ss_pred             CeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH---Hh---
Q 013722          246 DYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAA---IE---  319 (437)
Q Consensus       246 ~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~---l~---  319 (437)
                      ....|+|.||||||+.+.+++.|+++|+||.+.+.++.+|+-.-...+.-+++. .    ..+.|++.|...   +.   
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~----~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-A----DGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-H----TSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-C----CHHHHHHHHHHHHHHcCeEE
Confidence            356899999999999999999999999999999998876622112222222110 0    125566666543   21   


Q ss_pred             --h------ccC--CCcEEEEEeCC-CcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          320 --R------RAS--EGLELELYTDD-RFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       320 --~------~~~--~~~~iev~~~D-rpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                        +      +.+  .+..+++.+.| +||++.+|+.+|+++|+||...+.-+-.....=.|+|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~  149 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS  149 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence              0      111  25799999999 99999999999999999998887766323332236664

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.21  E-value=6.5e-06  Score=65.31  Aligned_cols=67  Identities=12%  Similarity=0.173  Sum_probs=53.0

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      ..+.|+|.++||||+|++|+++|+++|+||.+....+.++.+.-.+.+.-+  +     ...++.|.+.|.+..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~-----~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--E-----KQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S-----CCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--C-----CCCHHHHHHHHHHHH
Confidence            457899999999999999999999999999999998876776666777553  2     123577777777544

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.11  E-value=2.3e-05  Score=62.01  Aligned_cols=51  Identities=20%  Similarity=0.205  Sum_probs=44.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeC
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDI   76 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~   76 (437)
                      ....|+|.++||||++++++++|+++|+||.+....+.+|.+.-.+.+.-+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~   54 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD   54 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC
Confidence            457899999999999999999999999999999998877877766766433

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.98  E-value=4.3e-05  Score=59.78  Aligned_cols=64  Identities=13%  Similarity=0.270  Sum_probs=49.5

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC  185 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (437)
                      ..+.|.|.+.||||+|++|+++|+++|+||.+..+.+.++.+...|.+..+       +...++.+.+.|.
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L~   67 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHHT
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            356789999999999999999999999999999998865555556655542       3555566665554

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.93  E-value=4.1e-05  Score=59.92  Aligned_cols=63  Identities=10%  Similarity=0.265  Sum_probs=51.1

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      +.|.|.+.||||+|++|+++|++.|+||.+..+.+.++.+...|.+.-.     +.+..+++.++|.+
T Consensus         6 ~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            6 AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999998876666666666421     23566777777776

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.86  E-value=0.0036  Score=66.55  Aligned_cols=268  Identities=13%  Similarity=0.122  Sum_probs=154.3

Q ss_pred             CeEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCc--c
Q 013722           26 HATVIQVD-SVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASF--L  101 (437)
Q Consensus        26 ~~~~I~V~-~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~--~  101 (437)
                      +.+.|++. .++.||.++++...|+++|++|.--..+. .+|..--.|.|...  .    -.....+.+.+......  +
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~--~----~~~a~~~l~~~~~el~~~~~  342 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKD--L----LNTAEAVTSAIAPALRSYPE  342 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGG--G----HHHHHHHHHHHGGGGSSSTT
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHH--H----HHHHHHHHHHHHHHhhcccc
Confidence            34455554 57899999999999999999995333222 45555555777321  1    01112222223222200  0


Q ss_pred             cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHH
Q 013722          102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLL  178 (437)
Q Consensus       102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~  178 (437)
                      .....++.  ...+...|+|++.   .+||+.+++..+|++.|+||....  |.  ...-.|.|...          ..+
T Consensus       343 ~~~~~~v~--~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~~----------d~~  406 (600)
T 3l76_A          343 ADQEAEII--VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQR----------DAD  406 (600)
T ss_dssp             CSSSSEEE--EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGG----------GHH
T ss_pred             ccCcceeE--ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcHH----------HHH
Confidence            00111222  2346788999985   789999999999999999997765  32  22333444431          123


Q ss_pred             HHHHHHhhhhccCCCCCCCCcccccccccccchhhhhhhhcccccccccccCCCCCcEE-EEEecCCCCeeEEEEE-eCC
Q 013722          179 KIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHV-TILDCSDRDYTAVTIR-SKD  256 (437)
Q Consensus       179 ~l~~~L~~aL~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~V-~v~~~~~~~~t~V~V~-~~D  256 (437)
                      +.-+.|++.+.......     .        +          ....       ...+.| -+..  +.+.+.|+|. .+|
T Consensus       407 ~Av~aLh~~f~~~~t~~-----~--------~----------~~~~-------~~~~~v~Gia~--~~~~a~i~i~~~~~  454 (600)
T 3l76_A          407 RAIAALSNAFGVTLSPP-----K--------N----------QTDT-------SHLPAVRGVAL--DQDQAQIAIRHVPD  454 (600)
T ss_dssp             HHHHHHHHHTTCCBCCC-----C--------C----------CCC----------CCSCCEEEE--ECSEEEEEEEEEES
T ss_pred             HHHHHHHHhhcccCCCc-----c--------c----------cccc-------cccCceEEEEe--eCCEEEEEEecCCC
Confidence            34445555554321100     0        0          0000       001111 1221  2345566653 699


Q ss_pred             CCchHHHHHHHHHhCCCeEEEEEEEec----CC--eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhccC-------
Q 013722          257 RPKLLFDTVCCLTDMQYVVYHGTVVTG----RM--EAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRAS-------  323 (437)
Q Consensus       257 rpgL~~~v~~~L~~~~lnI~~a~i~t~----~g--~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~-------  323 (437)
                      +||..+++...|++.|+||---.....    .|  ..--+|.|...         ..++..+.|++ +...+.       
T Consensus       455 ~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~---------d~~~a~~~l~~-~~~~~~~~~v~~~  524 (600)
T 3l76_A          455 RPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEG---------DSSQAEAILQP-LIKDWLDAAIVVN  524 (600)
T ss_dssp             STTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHH---------HHHHHHHHHHH-HTTTSTTCEEEEE
T ss_pred             CccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHH---------HHHHHHHHHHH-HHHhcCCceEEEe
Confidence            999999999999999999954433321    14  33445666543         33344444444 222221       


Q ss_pred             -CCcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEEE
Q 013722          324 -EGLELELYT---DDRFGLLSDITRILREYGLCIRRAE  357 (437)
Q Consensus       324 -~~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~  357 (437)
                       .-.+|.|.+   ..+||+.+++-++|++.||||..-.
T Consensus       525 ~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          525 KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             CCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             CCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence             235788876   6899999999999999999998755

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.64  E-value=0.0011  Score=63.94  Aligned_cols=118  Identities=15%  Similarity=0.126  Sum_probs=71.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccC
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS--DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNS  103 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  103 (437)
                      ....++|.|+||||+.+.++++|+++|+||.+.+.++  ..|++.-...+.-+.+. .    ..+.|+++|..... ...
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~----~~~~L~~~f~~la~-~~~   78 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-I----PLASLRTGFGVIAA-KFT   78 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-C----CHHHHHHHHHHHHH-HTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-C----CHHHHHHHHHHHHH-HcC
Confidence            3478999999999999999999999999999999985  45766544444333321 1    13456666654321 001


Q ss_pred             cceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          104 MRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       104 ~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                      +.-++....  ....|-|-...+---|..|-.....-.+++.=+-+.+
T Consensus        79 m~~~l~~~~--~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           79 MGWHMRDRE--TRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             CEEEEEETT--SCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             CEEEeeccC--CCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence            111222221  2334445445555577777777776666654444444

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.61  E-value=0.00061  Score=66.28  Aligned_cols=66  Identities=20%  Similarity=0.224  Sum_probs=48.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD--GGYLMDVFYVTDINGQKIGDQATISYIKTTVET   96 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~   96 (437)
                      ....++|.|+||||+.+.++++|+++|+||.+++.+++  .|+++-...+..+.+ ..    ..+.|+++|..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~----~~~~L~~~l~~   88 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PF----DLDGFREAFTP   88 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SS----CHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CC----CHHHHHHHHHH
Confidence            45789999999999999999999999999999999975  577654444432222 11    23456666644

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.49  E-value=0.0021  Score=56.89  Aligned_cols=114  Identities=17%  Similarity=0.216  Sum_probs=77.5

Q ss_pred             CCeeEEEEE-eCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhcc
Q 013722          245 RDYTAVTIR-SKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRA  322 (437)
Q Consensus       245 ~~~t~V~V~-~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~  322 (437)
                      .+.+.|+|. .+|+||.++++...|++.|+||..-..... +|..--+|+|...+.         ++..+.|++. ...+
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~---------~~a~~~l~~~-~~~l   92 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY---------KQTLEILSER-QDSI   92 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH---------HHHHHHHHHS-STTT
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH---------HHHHHHHHHH-HHHc
Confidence            456778888 599999999999999999999998765432 343345677765322         2233344432 1111


Q ss_pred             --------CCCcEEEEEeCC---CcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          323 --------SEGLELELYTDD---RFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       323 --------~~~~~iev~~~D---rpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                              ..-.++.|.+.+   +||+++++.++|+++||||..  |+|-...  =.|.|.
T Consensus        93 ~~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~--istse~~--is~vv~  149 (167)
T 2re1_A           93 GAASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM--ISTSEIK--VSVLID  149 (167)
T ss_dssp             TCSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE--EEECSSE--EEEEEE
T ss_pred             CCceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE--EEcccCE--EEEEEe
Confidence                    123679999987   999999999999999999998  4453222  246563

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.49  E-value=0.002  Score=62.16  Aligned_cols=65  Identities=9%  Similarity=0.108  Sum_probs=47.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS--DGGYLMDVFYVTDINGQKIGDQATISYIKTTVET   96 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~   96 (437)
                      ....++|.|+||||+.+++++.|+++|+||.+.+.++  ..|++.-...+..+. . .    ..+.|+++|..
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~-~----~~~~L~~~f~~   73 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-D-F----DEAGFRAGLAE   73 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-S-C----CHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-C-C----CHHHHHHHHHH
Confidence            3578999999999999999999999999999999986  456664344442222 1 1    23556666654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.47  E-value=0.0023  Score=56.60  Aligned_cols=111  Identities=11%  Similarity=0.142  Sum_probs=74.2

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEE-EeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722           25 EHATVIQVD-SVNRHGILLEVIQFLVDLNLVITKAYIS-SDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN  102 (437)
Q Consensus        25 ~~~~~I~V~-~~DrpGLla~i~~~L~~~glnI~~A~I~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  102 (437)
                      .+...|+|. .+|+||.++++...|+++|+||..-... +.+|...-.|.|...+      .   +..++.|.+.... .
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~------~---~~a~~~l~~~~~~-l   92 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGD------Y---KQTLEILSERQDS-I   92 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGG------H---HHHHHHHHHSSTT-T
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechH------H---HHHHHHHHHHHHH-c
Confidence            357888888 5999999999999999999999866553 2345444457773211      1   2223334332110 0


Q ss_pred             CcceeeeecCCCceEEEEEEeCC---CcchHHHHHHHHHhCCCeEEEEE
Q 013722          103 SMRSSVGVVPSKEYTSIELTGTD---RPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       103 ~~~r~v~~~~~~~~t~i~v~~~D---rpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                      .. ..+.  ...+...++|.+.+   +||+++++..+|+++|+||....
T Consensus        93 ~~-~~i~--~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           93 GA-ASID--GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             TC-SEEE--EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             CC-ceEE--ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence            00 1122  23367899999987   99999999999999999998843

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.43  E-value=0.0021  Score=61.99  Aligned_cols=116  Identities=12%  Similarity=0.049  Sum_probs=68.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccC
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS--DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNS  103 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  103 (437)
                      ....+++.|+||||+.+.+++.|+++|+||.+.+.++  ..|++.-...+ +..+..      .+.|+++|..... ...
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~~~------~~~L~~~f~~la~-~~~   77 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV-EIPVAG------VNDFNSAFGKVVE-KYN   77 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE-ECCC---------CHHHHHHHHHHG-GGT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE-EcCCCC------HHHHHHHHHHHHH-HcC
Confidence            4679999999999999999999999999999999985  45666533333 222211      2356666544321 011


Q ss_pred             cceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          104 MRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       104 ~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                      +.-++.......  .|-|.+..+---|..|-.....-.+++.=+-+.+
T Consensus        78 m~~~l~~~~~~~--ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           78 AEWWFRPRTDRK--KVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             CEEEEEETTCCC--EEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             CeeEeeccCCCc--EEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEe
Confidence            122222222222  3334344444567777777766656544334444

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.35  E-value=0.0025  Score=61.72  Aligned_cols=48  Identities=10%  Similarity=0.094  Sum_probs=40.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEE
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS--DGGYLMDVFYV   73 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V   73 (437)
                      ....+++.|+||||+.++++++|+++|+||.+.+.++  ..|++.-...+
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~   58 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF   58 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE
Confidence            4578999999999999999999999999999999986  45666433333

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.30  E-value=0.0088  Score=53.43  Aligned_cols=111  Identities=14%  Similarity=0.171  Sum_probs=74.0

Q ss_pred             CCeEEEEE-EeCCCccHHHHHHHHHHhCCceEEEEEEEEe---CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCc
Q 013722           25 EHATVIQV-DSVNRHGILLEVIQFLVDLNLVITKAYISSD---GGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASF  100 (437)
Q Consensus        25 ~~~~~I~V-~~~DrpGLla~i~~~L~~~glnI~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~  100 (437)
                      .+.+.|+| ..+|+||.++++...|++.|+||..-..++.   ++..--.|.+...         ..+..++.|.+....
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHHh
Confidence            36788888 4799999999999999999999986555433   3332223666321         123334445442110


Q ss_pred             ccCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEE
Q 013722          101 LNSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       101 ~~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                       ... ..+..  ..+...|+|.|.   ++||+++++..+|++.|+||....
T Consensus        84 -~~~-~~v~~--~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           84 -GNW-TNVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             -TTC-SEEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             -cCC-CeEEE--eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence             000 12222  236778888886   899999999999999999998843

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.20  E-value=0.0025  Score=57.04  Aligned_cols=114  Identities=15%  Similarity=0.180  Sum_probs=76.6

Q ss_pred             CCeeEEEE-EeCCCCchHHHHHHHHHhCCCeEEEEEEEec---CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh
Q 013722          245 RDYTAVTI-RSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG---RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER  320 (437)
Q Consensus       245 ~~~t~V~V-~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~---~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~  320 (437)
                      .+.+.|+| ..+|+||.++++...|++.|+||..-...+.   ++..-..|.+...         ..++..+.|++ +..
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~-~~~   82 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKK-LQV   82 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHT-TTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHH-HHH
Confidence            45667777 4799999999999999999999998766543   3333334666552         22333344443 211


Q ss_pred             cc--------CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          321 RA--------SEGLELELYTD---DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       321 ~~--------~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      ..        +.-.+|.|.+.   ++||+++++.++|++.||||..  |+|-.  ..-.|.|.
T Consensus        83 ~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~--istSe--~~Is~vV~  141 (178)
T 2dtj_A           83 QGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--ISTSE--IRISVLIR  141 (178)
T ss_dssp             TTTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE--EEEET--TEEEEEEE
T ss_pred             hcCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE--EEcCC--CeEEEEEe
Confidence            11        12356777775   8999999999999999999998  44432  22356663

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.05  E-value=0.0018  Score=57.27  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=50.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV  187 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a  187 (437)
                      ...|+|.+.|+||+|++|+++|+++|+||.+..+.+ .+ +...-+|.|..        ++..++++.+.|.+.
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999975 32 45555666653        356778888877743

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.01  E-value=0.002  Score=62.22  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=34.8

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT  151 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T  151 (437)
                      ..++|++.|+||||+++.|+++|+++|+||.++..++
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   42 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN   42 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee
Confidence            4679999999999999999999999999999999875

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.99  E-value=0.002  Score=56.96  Aligned_cols=62  Identities=18%  Similarity=0.307  Sum_probs=50.6

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      +.|+|...||||+|++|+.+|++.|+||.+..+.+..  +.+.-+|.|..      ++...++|.++|.+
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec------cHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999887542  55666777742      14677889998888

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.97  E-value=0.016  Score=55.87  Aligned_cols=104  Identities=11%  Similarity=-0.020  Sum_probs=63.8

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh-----
Q 013722          247 YTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG--RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE-----  319 (437)
Q Consensus       247 ~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~--~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~-----  319 (437)
                      ...++|.||||||+.+++++.|+++|+||.+.+.++.  .|+-.-...+..+++  .    ..+.|++.|.+.-+     
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~--~----~~~~L~~~f~~la~~l~m~   81 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDD--F----DEAGFRAGLAERSEAFGMA   81 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSS--C----CHHHHHHHHHHHHGGGTCE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCC--C----CHHHHHHHHHHHHHHcCCE
Confidence            4679999999999999999999999999999999863  353222333333332  2    24566666654311     


Q ss_pred             ---hccCCCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEE
Q 013722          320 ---RRASEGLELELYTDDRFGLLSDITRILREYGLCIRRA  356 (437)
Q Consensus       320 ---~~~~~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A  356 (437)
                         +...++..|-|-+-.+---|.+|-.....-.++.+-+
T Consensus        82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~  121 (286)
T 3n0v_A           82 FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVV  121 (286)
T ss_dssp             EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEE
T ss_pred             EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEE
Confidence               1112233444444444446666666666555544333

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.94  E-value=0.022  Score=54.91  Aligned_cols=107  Identities=12%  Similarity=0.059  Sum_probs=69.0

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH---Hh--
Q 013722          247 YTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG--RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAA---IE--  319 (437)
Q Consensus       247 ~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~--~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~---l~--  319 (437)
                      ...+++.|+||||+.+++++.|+++|+||.+.+.++.  .|+-.-...+.-+++ ..    ..+.|++.|+..   +.  
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VI----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CC----CHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CC----CHHHHHHHHHHHHHHcCCE
Confidence            4679999999999999999999999999999999863  353222233333332 12    245566666542   11  


Q ss_pred             ---hccCCCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722          320 ---RRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEI  358 (437)
Q Consensus       320 ---~~~~~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I  358 (437)
                         +...++..|-|-.-.+---|.+|-.....-.++++-+-+
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V  122 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAI  122 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEE
Confidence               112334556666666656778888887776676544433

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.93  E-value=0.0024  Score=56.47  Aligned_cols=109  Identities=11%  Similarity=0.118  Sum_probs=72.9

Q ss_pred             CCeEEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEEEe---CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCc
Q 013722           25 EHATVIQVDS-VNRHGILLEVIQFLVDLNLVITKAYISSD---GGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASF  100 (437)
Q Consensus        25 ~~~~~I~V~~-~DrpGLla~i~~~L~~~glnI~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~  100 (437)
                      .+...|+|.+ +|+||.++++...|++.|+||..-.....   .|..--+|.|...+.     +...+.|++ +.....+
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~-~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEP-VLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHH-HHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHH-HHHHhCC
Confidence            4677888876 89999999999999999999986444321   344444577743211     122233333 2221211


Q ss_pred             ccCcceeeeecCCCceEEEEEEeCC---CcchHHHHHHHHHhCCCeEEEE
Q 013722          101 LNSMRSSVGVVPSKEYTSIELTGTD---RPGLLSEVSAVLTDLSCSVVSA  147 (437)
Q Consensus       101 ~~~~~r~v~~~~~~~~t~i~v~~~D---rpGLL~~I~~~l~~~g~~I~~A  147 (437)
                            .+..  ..+...++|+|.+   +||+++++..+|++.|+||...
T Consensus        88 ------~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           88 ------EAIL--RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             ------EEEE--ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             ------cEEE--eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence                  2221  2367789999976   9999999999999999999544

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.91  E-value=0.0031  Score=55.74  Aligned_cols=118  Identities=10%  Similarity=0.036  Sum_probs=75.5

Q ss_pred             CCeeEEEEEe-CCCCchHHHHHHHHHhCCCeEEEEEEEec---CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh
Q 013722          245 RDYTAVTIRS-KDRPKLLFDTVCCLTDMQYVVYHGTVVTG---RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER  320 (437)
Q Consensus       245 ~~~t~V~V~~-~DrpgL~~~v~~~L~~~~lnI~~a~i~t~---~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~  320 (437)
                      .+.+.|+|.+ +|+||..+++...|++.|+||..-.....   .|..--+|.|...+..      ...++.+.+.+.+.-
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~------~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQ------EALEALEPVLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHH------HHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHH------HHHHHHHHHHHHhCC
Confidence            4566677765 89999999999999999999987654332   2334456777663321      111222222222221


Q ss_pred             c--c-CCCcEEEEEeCC---CcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          321 R--A-SEGLELELYTDD---RFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       321 ~--~-~~~~~iev~~~D---rpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      .  . +.-.++.|.+.+   +||+++++.++|++.||||..-  +|- +. .=.|.|.
T Consensus        88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i--s~S-e~-~is~vv~  141 (167)
T 2dt9_A           88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI--ATS-EV-RISVIIP  141 (167)
T ss_dssp             EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE--EEC-SS-EEEEEEE
T ss_pred             cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE--Ecc-CC-EEEEEEe
Confidence            1  1 123568888877   9999999999999999999554  333 22 3346664

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.90  E-value=0.0029  Score=55.98  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=50.9

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-c-CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-H-NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV  187 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a  187 (437)
                      ...++|...|+||+|++|+++|+++|+||.+..+.+ . .+...-+|.|..        ++..++++.+.|.+.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCC
Confidence            467899999999999999999999999999999875 3 355666666664        356677788777744

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.88  E-value=0.022  Score=55.29  Aligned_cols=106  Identities=10%  Similarity=0.035  Sum_probs=64.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH---Hh---
Q 013722          248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG--RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAA---IE---  319 (437)
Q Consensus       248 t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~--~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~---l~---  319 (437)
                      ..++|.||||||+.+++++.|++.|+||.+.+.++.  .|+-.-...+..+++ ..    ..+.|++.|.+.   +.   
T Consensus        23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~----~~~~L~~~l~~la~~l~m~~   97 (302)
T 3o1l_A           23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PF----DLDGFREAFTPIAEEFSMDW   97 (302)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SS----CHHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CC----CHHHHHHHHHHHHHHhCCee
Confidence            578999999999999999999999999999999875  353222333333322 12    245566655432   21   


Q ss_pred             --hccCCCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722          320 --RRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEI  358 (437)
Q Consensus       320 --~~~~~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I  358 (437)
                        +...++..|-|-+-.+---|.+|-.....-.++.+-+-+
T Consensus        98 ~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~V  138 (302)
T 3o1l_A           98 RITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACV  138 (302)
T ss_dssp             EEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEE
T ss_pred             eecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEE
Confidence              111223344444444444667776666665554433333

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.83  E-value=0.025  Score=54.66  Aligned_cols=108  Identities=11%  Similarity=0.028  Sum_probs=64.2

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeEEEEEEEEcc-CCCCCCcHHHHHHHHHHHHHH---Hh-
Q 013722          247 YTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG--RMEAYQEYYIKHV-DGFPISSEAERQRVMACLEAA---IE-  319 (437)
Q Consensus       247 ~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~--~g~ald~F~V~~~-~g~~~~~~~~~~~l~~~L~~~---l~-  319 (437)
                      ...+++.||||||+.+++++.|+++|+||.+.+.++.  .|+-.-...+..+ .+...    ..+.|++.|++.   +. 
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~la~~~~m   85 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEPIAERFRM   85 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHHHHHhcCc
Confidence            4679999999999999999999999999999999863  3522212222222 01011    245566666442   21 


Q ss_pred             ----hccCCCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722          320 ----RRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEI  358 (437)
Q Consensus       320 ----~~~~~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I  358 (437)
                          +...++..|-|.+-.+---|.+|-.....-.++++-+-+
T Consensus        86 ~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~V  128 (292)
T 3lou_A           86 QWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGI  128 (292)
T ss_dssp             EEEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEE
T ss_pred             EEEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEE
Confidence                112233445554444444677777776665555443333

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.80  E-value=0.0036  Score=55.34  Aligned_cols=62  Identities=18%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee-c-CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEIST-M-GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T-~-g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      ..|+|...|+||+|++|+.+|.++|+||.+..+.+ . .+.+.-+|.|..      ++...++|..+|.+
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~------d~~~leql~kQL~K   68 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec------cHHHHHHHHHHhcC
Confidence            47899999999999999999999999999988864 3 355666776742      14677889999888

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.64  E-value=0.16  Score=53.86  Aligned_cols=191  Identities=14%  Similarity=0.127  Sum_probs=114.7

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722           25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL  101 (437)
Q Consensus        25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  101 (437)
                      .+...|+|.+.   ++||+.+++..+|++.|+||..-.  +. +.- -.|.|...+.     +..++.|.+.+......+
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~~-Is~vI~~~d~-----~~Av~aLh~~f~~~~t~~  423 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EVK-VSCVIDQRDA-----DRAIAALSNAFGVTLSPP  423 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SSE-EEEEEEGGGH-----HHHHHHHHHHTTCCBCCC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CCE-EEEEEcHHHH-----HHHHHHHHHhhcccCCCc
Confidence            46789999976   699999999999999999997554  33 322 2355632211     234555555554321100


Q ss_pred             cC-----cceeee-ecCCCceEEEEEEe-CCCcchHHHHHHHHHhCCCeEEEEEEEec----Cc--eeEEEEEEEeCCCC
Q 013722          102 NS-----MRSSVG-VVPSKEYTSIELTG-TDRPGLLSEVSAVLTDLSCSVVSAEIWTH----NA--RAAALLHVKDQSSG  168 (437)
Q Consensus       102 ~~-----~~r~v~-~~~~~~~t~i~v~~-~DrpGLL~~I~~~l~~~g~~I~~A~i~T~----~~--~~~d~F~V~~~~~g  168 (437)
                      ..     ....|. ...+.+...|+|.. +|+||+.++|.+.|+++|+||.-......    .|  ...-.|.|..    
T Consensus       424 ~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----  499 (600)
T 3l76_A          424 KNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----  499 (600)
T ss_dssp             CCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----
T ss_pred             cccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----
Confidence            00     001111 13344667777764 89999999999999999999965544432    23  2333455543    


Q ss_pred             CcCCCHHHHHHHHHHHhhhhccCCCCCCCCcccccccccccchhhhhhhhcccccccccccCCCCCcEEEEEecCCCCee
Q 013722          169 CAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYT  248 (437)
Q Consensus       169 ~~~~~~~~~~~l~~~L~~aL~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~t  248 (437)
                            ..++...+.|.+ +..+..                             +           ..|.++    .+..
T Consensus       500 ------~d~~~a~~~l~~-~~~~~~-----------------------------~-----------~~v~~~----~~~a  528 (600)
T 3l76_A          500 ------GDSSQAEAILQP-LIKDWL-----------------------------D-----------AAIVVN----KAIA  528 (600)
T ss_dssp             ------HHHHHHHHHHHH-HTTTST-----------------------------T-----------CEEEEE----CCEE
T ss_pred             ------HHHHHHHHHHHH-HHHhcC-----------------------------C-----------ceEEEe----CCeE
Confidence                  122333333332 111111                             0           012221    3455


Q ss_pred             EEEEE---eCCCCchHHHHHHHHHhCCCeEEEEE
Q 013722          249 AVTIR---SKDRPKLLFDTVCCLTDMQYVVYHGT  279 (437)
Q Consensus       249 ~V~V~---~~DrpgL~~~v~~~L~~~~lnI~~a~  279 (437)
                      .|.|.   ++..||+-+++..+|++.|+||..-.
T Consensus       529 kVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          529 KVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             EEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             EEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            66666   47899999999999999999998654

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.56  E-value=0.0079  Score=52.84  Aligned_cols=36  Identities=33%  Similarity=0.657  Sum_probs=33.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG  362 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g  362 (437)
                      .|+|.+.||+|||++|+++|.++++||.++.+.+.|
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g   37 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG   37 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence            589999999999999999999999999999997774

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.44  E-value=0.11  Score=46.85  Aligned_cols=130  Identities=15%  Similarity=0.201  Sum_probs=85.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-EeC-CEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCc
Q 013722           27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS-SDG-GYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSM  104 (437)
Q Consensus        27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~-t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  104 (437)
                      ...|+|...|+||.|++++++|+..|+||.+-.+. |.+ |..--++.|...       +..+++|.+.|....+.    
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLidV----   97 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVEV----   97 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTTE----
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCce----
Confidence            46899999999999999999999999999998886 544 665555666422       24678888888875431    


Q ss_pred             ceeee-ecC------CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHH
Q 013722          105 RSSVG-VVP------SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRL  177 (437)
Q Consensus       105 ~r~v~-~~~------~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~  177 (437)
                       .+|. ...      ..+...+.|.+...   -..|.++....+.+|.+..-.+      -++.++.        +++++
T Consensus        98 -ikV~dl~~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv~~~s------~~iE~tG--------~~~ki  159 (193)
T 2fgc_A           98 -VKVTPIDPLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDVSREG------AIIEITG--------ARSKV  159 (193)
T ss_dssp             -EEEEECCSSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEECSSE------EEEEEEE--------CHHHH
T ss_pred             -EEEEEecCCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEEcCCE------EEEEEcC--------CHHHH
Confidence             1111 111      11344566666432   7788888888888888765332      3355665        36566


Q ss_pred             HHHHHHHh
Q 013722          178 LKIKKLLC  185 (437)
Q Consensus       178 ~~l~~~L~  185 (437)
                      +.+-+.|.
T Consensus       160 ~a~i~~l~  167 (193)
T 2fgc_A          160 EAFINLLP  167 (193)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHhh
Confidence            65554443

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.44  E-value=0.018  Score=51.65  Aligned_cols=110  Identities=15%  Similarity=0.236  Sum_probs=71.6

Q ss_pred             CeEEEEE-EeCCCccHHHHHHHHHHhCCceEEEEEEE-Ee--CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722           26 HATVIQV-DSVNRHGILLEVIQFLVDLNLVITKAYIS-SD--GGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL  101 (437)
Q Consensus        26 ~~~~I~V-~~~DrpGLla~i~~~L~~~glnI~~A~I~-t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  101 (437)
                      +.+.|+| -.+|+||.++++...|++.|+||.--... +.  .|..--.|.|...+..     ...+.|++ +.....+ 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~-----~a~~~L~~-~~~el~~-   87 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGP-----AAVEKLDS-LRNEIGF-   87 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHH-----HHHHHHHH-THHHHCC-
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHH-----HHHHHHHH-HHHhcCc-
Confidence            4556665 37899999999999999999999754433 22  4555556877432111     11122222 2111110 


Q ss_pred             cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEE
Q 013722          102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                          .++..  ..+...+.|+|.   ++||+.+++..+|++.|+||....
T Consensus        88 ----~~v~~--~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           88 ----SQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             ----SEEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ----ceEEE--eCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence                11221  235778888875   899999999999999999998776

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.34  E-value=0.017  Score=52.11  Aligned_cols=68  Identities=13%  Similarity=0.279  Sum_probs=51.8

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE-ecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW-THN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT  190 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~-T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g  190 (437)
                      ....|+|...|+||.|++|+++|+..|+||.+..+. |.+ +...-++.|..+        +..+++|.++|.+....
T Consensus        28 m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KLidV   97 (193)
T 2fgc_A           28 REHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKLVEV   97 (193)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTSTTE
T ss_pred             eEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCcCce
Confidence            357899999999999999999999999999998886 444 444555566542        33567888888765544

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.01  E-value=0.025  Score=50.60  Aligned_cols=106  Identities=13%  Similarity=0.036  Sum_probs=69.9

Q ss_pred             CeeEEEE-EeCCCCchHHHHHHHHHhCCCeEEEEEEEe-c--CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-
Q 013722          246 DYTAVTI-RSKDRPKLLFDTVCCLTDMQYVVYHGTVVT-G--RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER-  320 (437)
Q Consensus       246 ~~t~V~V-~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t-~--~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-  320 (437)
                      +.+.|+| ..+|+||..+++...|++.|+||..-.... .  .|..--+|+|...+-.      ...++.+.+.+.+.- 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~------~a~~~L~~~~~el~~~   88 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGP------AAVEKLDSLRNEIGFS   88 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHH------HHHHHHHHTHHHHCCS
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHH------HHHHHHHHHHHhcCcc
Confidence            3344444 368999999999999999999998665433 2  3555567887765321      111211122222210 


Q ss_pred             c--c-CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEEEE
Q 013722          321 R--A-SEGLELELYTD---DRFGLLSDITRILREYGLCIRRAE  357 (437)
Q Consensus       321 ~--~-~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~  357 (437)
                      .  . +.-.++.|.+.   ++||+++++.++|++.||||....
T Consensus        89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            0  0 12357777765   899999999999999999998866

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.84  E-value=0.035  Score=48.57  Aligned_cols=59  Identities=17%  Similarity=0.128  Sum_probs=45.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN  186 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (437)
                      .|+|.+.||+|+|++|+.+|+.+++||..+.+.+. |.    +++.-+  .   .+...+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~--~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFA--E---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEEC--C---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEE--e---CCHHHHHHHHHHHHc
Confidence            47899999999999999999999999999999765 22    555552  1   135566777766653

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.83  E-value=0.11  Score=52.59  Aligned_cols=130  Identities=15%  Similarity=0.159  Sum_probs=83.5

Q ss_pred             CCeeEEEEE-eCCCCchHHHHHHHHHhCCCeEEEEEEEec---CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh
Q 013722          245 RDYTAVTIR-SKDRPKLLFDTVCCLTDMQYVVYHGTVVTG---RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER  320 (437)
Q Consensus       245 ~~~t~V~V~-~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~---~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~  320 (437)
                      .+.+.|+|. .+|+||..+++...|++.|+||..-...+.   .|..--+|+|...+.         ++..+.|++ +.+
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~---------~~a~~~l~~-~~~  331 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG---------RRAMEILKK-LQV  331 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH---------HHHHHHHHH-HHT
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH---------HHHHHHHHH-HHH
Confidence            456678888 799999999999999999999998766443   344455677765321         122233333 211


Q ss_pred             ccC--------CCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHH
Q 013722          321 RAS--------EGLELELYTD---DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQH  389 (437)
Q Consensus       321 ~~~--------~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~  389 (437)
                      .+.        .-.++.|.+.   +.||+++++.++|.+.||||..-  +|-..+  =.|.|..        ++.++.-+
T Consensus       332 ~~~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i--s~Se~~--is~vV~~--------~d~~~Av~  399 (421)
T 3ab4_A          332 QGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI--STSEIR--ISVLIRE--------DDLDAAAR  399 (421)
T ss_dssp             TTTCSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE--EEETTE--EEEEEEG--------GGHHHHHH
T ss_pred             HcCCceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE--EcCCCe--EEEEEeH--------HHHHHHHH
Confidence            111        1245777774   79999999999999999999844  343222  2355542        33444445


Q ss_pred             HHhhccc
Q 013722          390 QIGRTIL  396 (437)
Q Consensus       390 ~L~~~~~  396 (437)
                      .|++..+
T Consensus       400 ~Lh~~f~  406 (421)
T 3ab4_A          400 ALHEQFQ  406 (421)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            5555443

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.75  E-value=0.023  Score=51.78  Aligned_cols=111  Identities=11%  Similarity=0.082  Sum_probs=71.4

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEE---eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCc
Q 013722           25 EHATVIQVD-SVNRHGILLEVIQFLVDLNLVITKAYISS---DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASF  100 (437)
Q Consensus        25 ~~~~~I~V~-~~DrpGLla~i~~~L~~~glnI~~A~I~t---~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~  100 (437)
                      .+...|+|. .||+||..+++...|++.|+||.--....   .++.....|.+...+         .+.....|.+....
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d---------~~~~~~~l~~~~~~  103 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV---------GPAAVEKLDSLRNE  103 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG---------HHHHHHHHHTTHHH
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh---------HHHHHHHHHHHHhh
Confidence            356777776 69999999999999999999998543322   245555567774321         12222222221100


Q ss_pred             ccCcceeeeecCCCceEEEEEEe---CCCcchHHHHHHHHHhCCCeEEEEE
Q 013722          101 LNSMRSSVGVVPSKEYTSIELTG---TDRPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       101 ~~~~~r~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                       . ....+.  .+.+...|.|+|   ..+||+.+++..+|++.|+||.-..
T Consensus       104 -~-~~~~v~--~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          104 -I-GFSQLL--YDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             -H-CCSEEE--EECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             -h-ceeeEE--EecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence             0 001122  123456677775   6899999999999999999998775

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.73  E-value=0.21  Score=50.53  Aligned_cols=109  Identities=16%  Similarity=0.238  Sum_probs=72.9

Q ss_pred             CeEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEEe---CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722           26 HATVIQVD-SVNRHGILLEVIQFLVDLNLVITKAYISSD---GGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL  101 (437)
Q Consensus        26 ~~~~I~V~-~~DrpGLla~i~~~L~~~glnI~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  101 (437)
                      +.+.|+|. .+|+||.++++...|+++|+||.--...|.   .|...-.|.|...  ..   +...+.|++ +.....+ 
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~--~~---~~a~~~l~~-~~~~~~~-  335 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS--DG---RRAMEILKK-LQVQGNW-  335 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT--TH---HHHHHHHHH-HHTTTTC-
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech--hH---HHHHHHHHH-HHHHcCC-
Confidence            56677887 699999999999999999999986655443   3544445777421  11   122233333 3222211 


Q ss_pred             cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEE
Q 013722          102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSA  147 (437)
Q Consensus       102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A  147 (437)
                          ..+..  ..+...++|++.   ++||.++++..+|++.|+||...
T Consensus       336 ----~~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          336 ----TNVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             ----SEEEE--ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             ----ceEEE--eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence                11221  235778889885   89999999999999999999844

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.59  E-value=0.016  Score=53.14  Aligned_cols=49  Identities=8%  Similarity=0.328  Sum_probs=36.3

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-----CceeEEEEEEEe
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-----NARAAALLHVKD  164 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-----~~~~~d~F~V~~  164 (437)
                      ...|.|.+.||||+|++|+.+|+++++||...+..+.     ++.+.-.+.+.+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d   57 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   57 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence            5678999999999999999999999999999999884     345555544443

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.49  E-value=0.018  Score=52.80  Aligned_cols=48  Identities=25%  Similarity=0.309  Sum_probs=36.2

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-----CeEEEEEEEEc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-----RKVKDTFFVTD  373 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-----~~a~D~F~v~d  373 (437)
                      ..|.|.+.||||+|++|+++|+++++||.+....+..     +.|.-.+.+.+
T Consensus         5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d   57 (223)
T 1y7p_A            5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   57 (223)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence            4789999999999999999999999999999998853     25655566643

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.02  E-value=0.036  Score=50.46  Aligned_cols=108  Identities=15%  Similarity=0.069  Sum_probs=71.1

Q ss_pred             CCCeeEEEEE-eCCCCchHHHHHHHHHhCCCeEEEEEEEec---CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh
Q 013722          244 DRDYTAVTIR-SKDRPKLLFDTVCCLTDMQYVVYHGTVVTG---RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE  319 (437)
Q Consensus       244 ~~~~t~V~V~-~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~---~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~  319 (437)
                      +.+.+.|+|. .||+||..+++...|++.|+||-.-.....   .+..-.+|.+...+..      ....+.+.+...+.
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~------~~~~~l~~~~~~~~  105 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGP------AAVEKLDSLRNEIG  105 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHH------HHHHHHHTTHHHHC
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHH------HHHHHHHHHHhhhc
Confidence            3456677775 699999999999999999999987644332   3466667777654321      22222222222221


Q ss_pred             h-cc---CCCcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEEE
Q 013722          320 R-RA---SEGLELELYT---DDRFGLLSDITRILREYGLCIRRAE  357 (437)
Q Consensus       320 ~-~~---~~~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~  357 (437)
                      . ..   +.-.+|.|.+   ...||+.+++-++|++.||||..--
T Consensus       106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            0 00   1123455555   6789999999999999999998853

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.57  E-value=0.24  Score=49.90  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=42.8

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      ..|-+.-.|+||.+..|+.+|.++||||......|.|+.+.-++.|.
T Consensus       332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD  378 (404)
T 1sc6_A          332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE  378 (404)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence            56778889999999999999999999999999999998888777774

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=92.09  E-value=0.7  Score=47.10  Aligned_cols=108  Identities=12%  Similarity=0.163  Sum_probs=69.8

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722           26 HATVIQVDS---VNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN  102 (437)
Q Consensus        26 ~~~~I~V~~---~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  102 (437)
                      +.+.|+|..   ++.||.++++...|+++|++|..-  .+...  --.|.|...+-..     ..+.+.+.|......  
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~--~is~~V~~~d~~~-----~~~~~~~el~~~~~~--  365 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVD--SVSLVIEDCKLDG-----KCDKIIEEIKKQCNP--  365 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETT--EEEEEEEHHHHTT-----THHHHHHHHHHHSCC--
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCC--EEEEEEecchHHH-----HHHHHHHHHHHhcCC--
Confidence            456778875   689999999999999999999742  22222  1236774322111     122333334332210  


Q ss_pred             CcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEE
Q 013722          103 SMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEI  149 (437)
Q Consensus       103 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i  149 (437)
                         ..+.  -..+...|+|+|.   ++||+.+++..+|++.|+||....-
T Consensus       366 ---~~v~--v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsq  410 (446)
T 3tvi_A          366 ---DSIE--IHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQ  410 (446)
T ss_dssp             ---SEEE--EEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ---CcEE--EeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEe
Confidence               0111  1235778999875   5899999999999999999987653

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=91.91  E-value=0.53  Score=49.05  Aligned_cols=62  Identities=24%  Similarity=0.307  Sum_probs=50.5

Q ss_pred             CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHH
Q 013722          324 EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQH  389 (437)
Q Consensus       324 ~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~  389 (437)
                      .++.+-+.-.|+||.+..|+..|.++||||...++...  |+.+.-++.+.+    +++++..++|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~----~~~~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ----DVPDDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS----CCCHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC----CCCHHHHHHHhc
Confidence            35788899999999999999999999999999999764  677777777732    566666677664

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=90.96  E-value=0.79  Score=47.73  Aligned_cols=63  Identities=17%  Similarity=0.289  Sum_probs=47.4

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEEeCCCCCcCCCHHHHHHHH
Q 013722          113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVKDQSSGCAIEDQKRLLKIK  181 (437)
Q Consensus       113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~  181 (437)
                      ....+.+.+.-.|+||.+.+|+..|.++|+||.+.++...  ++.+.-++.+.+     ++ +++.+++|+
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~-----~~-~~~~l~~l~  515 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ-----DV-PDDVRTAIA  515 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS-----CC-CHHHHHHHH
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC-----CC-CHHHHHHHh
Confidence            3456788888999999999999999999999999999863  455555555543     33 355556555

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=90.62  E-value=0.47  Score=45.41  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      .|.|-+..+|+||-||++-..|+.+|||+.+-.-...+.+.++ .||| |.+|..-+ +..++.-+.|..
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d-~~v~~aL~~L~~  267 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHRED-QNVHNALENLRE  267 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTS-HHHHHHHHHHHT
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCc-HHHHHHHHHHHH
Confidence            3556666679999999999999999999999888877665554 7887 56676533 333333344443

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=89.30  E-value=1.6  Score=42.58  Aligned_cols=47  Identities=17%  Similarity=0.342  Sum_probs=38.9

Q ss_pred             CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCCh
Q 013722          334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVDP  381 (437)
Q Consensus       334 DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~~  381 (437)
                      |+||-||++-..|+.+|||+.+-.-.....+-.+ .||| |.+|..-++
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~  264 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWEE  264 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTSH
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCCH
Confidence            7999999999999999999999888877777666 7777 567766443

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=88.99  E-value=3.5  Score=42.62  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=70.6

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCC-cHHHHHHHHHHHhhccCcc
Q 013722           26 HATVIQVDS---VNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIG-DQATISYIKTTVETNASFL  101 (437)
Q Consensus        26 ~~~~I~V~~---~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~-~~~~~~~l~~~L~~~~~~~  101 (437)
                      +.+.|+|.+   ++++|.++++..+|+++|++|.--  .+....  -+|.|...+..... ..+.++.+.+.|....   
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I--~sse~s--is~~v~~~~~~~~~~~~~~l~~~~~el~~~~---  412 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATSEVS--ISLTLDPSKLWSRELIQQELDHVVEELEKIA---  412 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEETTE--EEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE--EeCCCe--EEEEEechHhhhhhHHHHHHHHHHHHhCCCC---
Confidence            567788874   789999999999999999999855  232221  23666322211110 1234444444443311   


Q ss_pred             cCcceeeeecCCCceEEEEEEeC--CCcchHHHHHHHHHhCCCeEEEEE
Q 013722          102 NSMRSSVGVVPSKEYTSIELTGT--DRPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       102 ~~~~r~v~~~~~~~~t~i~v~~~--DrpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                           .+..  ..+...|+|+|.  ..||+.+++..+|++.|+||....
T Consensus       413 -----~v~~--~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs  454 (510)
T 2cdq_A          413 -----VVNL--LKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS  454 (510)
T ss_dssp             -----EEEE--EEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE
T ss_pred             -----eEEE--eCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE
Confidence                 1111  225677888887  778999999999999999998764

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=88.95  E-value=0.82  Score=39.42  Aligned_cols=99  Identities=15%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722           26 HATVIQVDS---VNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN  102 (437)
Q Consensus        26 ~~~~I~V~~---~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  102 (437)
                      +...|+|.+   +++||..+++...|+++|+||.--.  +...  --+|+|.+.  .      ..+.+.+.|...     
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~--~------~~~~il~~l~~~-----   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDND--K------NLPDIVRALSDI-----   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCC--T------THHHHHHHHTTT-----
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECCh--H------HHHHHHHHHhcc-----
Confidence            567888874   5789999999999999999996332  2222  223666321  1      122333333321     


Q ss_pred             CcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEE
Q 013722          103 SMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       103 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                         ..+..  ..+...++|.|.   ++||+.+++..+|+  |+||....
T Consensus        80 ---~~v~~--~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is  121 (157)
T 3mah_A           80 ---GDVTV--DKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS  121 (157)
T ss_dssp             ---EEEEE--EEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEE
T ss_pred             ---CeEEE--eCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe
Confidence               11111  225678888875   68999999999999  99987754

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=88.95  E-value=0.92  Score=45.61  Aligned_cols=50  Identities=10%  Similarity=0.264  Sum_probs=43.8

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD  164 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~  164 (437)
                      +...|.+.-.|+||.+..|+.+|+++|+||...++.+.|+.+.-++.+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            45568888999999999999999999999999999998888777777665

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=88.71  E-value=0.74  Score=44.65  Aligned_cols=92  Identities=17%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             hCC-CeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhccCCCcEEEEEeC-CCcchHHHHHHHHH
Q 013722          270 DMQ-YVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTD-DRFGLLSDITRILR  347 (437)
Q Consensus       270 ~~~-lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~iev~~~-DrpGLL~~I~~~l~  347 (437)
                      ..| |+|+.-.|....+ ..-.|+|..........                 .....|.|-+..+ |+||-||++-..|+
T Consensus       163 ~Yg~L~il~~~I~D~~~-N~TRFlvl~~~~~~~~~-----------------~~~~kTSl~f~~~~~~pGaL~~~L~~Fa  224 (313)
T 3mwb_A          163 EQPGLNVLAEDIGDNPD-AVTRFILVSRPGALPER-----------------TGADKTTVVVPLPEDHPGALMEILDQFA  224 (313)
T ss_dssp             HCTTCEEEESCCCSCTT-CEEEEEEEECSCCCCCC-----------------CSSEEEEEEEECSSCCTTHHHHHHHHHH
T ss_pred             HcCChhhhhhcccCCCc-ceeEEEEEecCCCCCCC-----------------CCCCeEEEEEEeCCCCCCHHHHHHHHHH
Confidence            346 7777766655332 23367777654421110                 0012466777775 99999999999999


Q ss_pred             HcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCC
Q 013722          348 EYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVD  380 (437)
Q Consensus       348 ~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~  380 (437)
                      .+|||+.+-.-.....+-.+ .||| |.+|..-+
T Consensus       225 ~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d  257 (313)
T 3mwb_A          225 SRGVNLSRIESRPTGQYLGHYFFSI-DADGHATD  257 (313)
T ss_dssp             TTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTS
T ss_pred             HCCccEEEEEEeecCCCCccEEEEE-EEeCCCCc
Confidence            99999998888776655544 7888 55676533

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=88.14  E-value=5.5  Score=40.46  Aligned_cols=103  Identities=10%  Similarity=0.076  Sum_probs=66.9

Q ss_pred             CeeEEEEEe---CCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh-hc
Q 013722          246 DYTAVTIRS---KDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE-RR  321 (437)
Q Consensus       246 ~~t~V~V~~---~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~-~~  321 (437)
                      +.+.|+|..   ++.||..+++...|++.++||....   .+. .--+|.|...+-..     ..+.+.+.|.+.+. ..
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~---~~~-~~is~~V~~~d~~~-----~~~~~~~el~~~~~~~~  367 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP---SGV-DSVSLVIEDCKLDG-----KCDKIIEEIKKQCNPDS  367 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC---EET-TEEEEEEEHHHHTT-----THHHHHHHHHHHSCCSE
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe---cCC-CEEEEEEecchHHH-----HHHHHHHHHHHhcCCCc
Confidence            455777774   6899999999999999999997542   111 12346665532110     12333333333221 00


Q ss_pred             c---CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEEEE
Q 013722          322 A---SEGLELELYTD---DRFGLLSDITRILREYGLCIRRAE  357 (437)
Q Consensus       322 ~---~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~  357 (437)
                      .   ..-.+|.|.+.   ..||+.+++.++|.+.||||..-.
T Consensus       368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence            0   11357888775   589999999999999999998754

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=88.05  E-value=1.3  Score=42.02  Aligned_cols=98  Identities=10%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             CCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhccCCCcEEEEEe---CCCcchHHHHHHHHH
Q 013722          271 MQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYT---DDRFGLLSDITRILR  347 (437)
Q Consensus       271 ~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~iev~~---~DrpGLL~~I~~~l~  347 (437)
                      .||+|..-.|....+ ..-.|+|..... +..                    ...|.|-+..   .|+||-||++-..|+
T Consensus       154 ygL~il~~~I~D~~~-N~TRF~vl~~~~-~~~--------------------~~ktsl~f~~~~~~~~pGaL~~~L~~Fa  211 (267)
T 2qmw_A          154 YGFTPIDTHIEDYPH-NVTRFLVIKNQQ-QFD--------------------QNATSLMFLITPMHDKPGLLASVLNTFA  211 (267)
T ss_dssp             GTCCEEEECCCSCSC-CEEEEEEEESCC-CCC--------------------SSCSEEEEEEEESSCCTTHHHHHHHHHH
T ss_pred             CCCcEeeccccCCCC-CceEEEEEecCC-CCC--------------------CCeEEEEEEcCCCCCCcChHHHHHHHHH
Confidence            367777666655332 223677666443 111                    1245677777   899999999999999


Q ss_pred             HcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          348 EYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       348 ~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      .+|||+.+-.-...+.+-++ .|||. .+ .. .++..++.-+.|..
T Consensus       212 ~~gINLtkIESRP~~~~~~~Y~FfiD-~e-~~-~d~~v~~aL~~L~~  255 (267)
T 2qmw_A          212 LFNINLSWIESRPLKTQLGMYRFFVQ-AD-SA-ITTDIKKVIAILET  255 (267)
T ss_dssp             TTTCCEEEEEEEECSSSTTCEEEEEE-ES-CC-SCHHHHHHHHHHHH
T ss_pred             HcCCCeeEEEEeecCCCCccEEEEEE-Ee-cC-CcHHHHHHHHHHHH
Confidence            99999999888777655444 78884 44 33 33333333344443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=87.21  E-value=0.96  Score=45.65  Aligned_cols=46  Identities=22%  Similarity=0.286  Sum_probs=40.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEE
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVF   71 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F   71 (437)
                      +...|.+.=+|.||.+.+|..+|+++|+||..-...|.+++++-+.
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~  387 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVM  387 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEE
Confidence            5689999999999999999999999999999877788888774333

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=86.96  E-value=1.6  Score=41.73  Aligned_cols=54  Identities=17%  Similarity=0.055  Sum_probs=42.8

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCc-eeEEEEEEEeCCCCCc
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNA-RAAALLHVKDQSSGCA  170 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~-~~~d~F~V~~~~~g~~  170 (437)
                      ..|.|.+..+|+||-|+++-+.|+.+|+|+.+.+.....+ ...=.|||.-  .|..
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~--eg~~  253 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF--IGHR  253 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE--ESCT
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE--ecCC
Confidence            3466777778999999999999999999999999886444 4566777766  3554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.29  E-value=5.1  Score=40.32  Aligned_cols=50  Identities=16%  Similarity=0.220  Sum_probs=42.7

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEE
Q 013722          114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVK  163 (437)
Q Consensus       114 ~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~  163 (437)
                      .....|.+.-.|.||.|..|+.+|+++|+||..-...|.++.+--+.-|.
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            35689999999999999999999999999999999999777665544443

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=83.94  E-value=2.3  Score=43.26  Aligned_cols=34  Identities=38%  Similarity=0.448  Sum_probs=29.7

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEI  358 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I  358 (437)
                      ++-+.+...|+||.|++|+.+|.++||+|.+..=
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q  392 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQ  392 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence            4789999999999999999999999999988643

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=83.75  E-value=6.6  Score=38.17  Aligned_cols=53  Identities=19%  Similarity=0.186  Sum_probs=39.2

Q ss_pred             eEEEEEEeC--CCcchHHHHHHHHHhCCCeEEEEEEEecCce-eEEEEEEEeCCCCCc
Q 013722          116 YTSIELTGT--DRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR-AAALLHVKDQSSGCA  170 (437)
Q Consensus       116 ~t~i~v~~~--DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~-~~d~F~V~~~~~g~~  170 (437)
                      .+.+.+..+  |+||-|+++-..|+.+|+|+.+.+.....+. ..=.|||.-  .|..
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~~  261 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAAP  261 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSCT
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCCc
Confidence            344444444  7999999999999999999999998865554 455667665  4654

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=83.08  E-value=3.2  Score=40.15  Aligned_cols=54  Identities=17%  Similarity=0.248  Sum_probs=42.3

Q ss_pred             ceEEEEEEeC-CCcchHHHHHHHHHhCCCeEEEEEEEecCc-eeEEEEEEEeCCCCCc
Q 013722          115 EYTSIELTGT-DRPGLLSEVSAVLTDLSCSVVSAEIWTHNA-RAAALLHVKDQSSGCA  170 (437)
Q Consensus       115 ~~t~i~v~~~-DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~-~~~d~F~V~~~~~g~~  170 (437)
                      ..|.|.+..+ |+||-|+++-+.|+.+|+|+.+.+.....+ ...=.|||.-  .|..
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~~  255 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA--DGHA  255 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE--ESCT
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE--eCCC
Confidence            5677777785 999999999999999999999998876443 4455677765  3554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	437
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	0.002

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVK-DQSSGCAIE 172
            ++  I   GTDRPG+ +EV  ++T   C+++ + I         L+ +    S+   +E
Sbjct: 3   TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVE 62

Query: 173 DQ-KRLLKIKKLLCNVLRTN 191
                L +   L+  + RT+
Sbjct: 63  TTLPLLGQQHDLITMMKRTS 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.67
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.61
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.48
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.47
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.12
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.89
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.88
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.77
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.75
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.54
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.51
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.46
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.43
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.39
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.35
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.27
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.25
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.23
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.17
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.01
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.95
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.54
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.33
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	94.08
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	92.69
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	92.32
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.63
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	84.26
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.1
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.13

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.67  E-value=7.1e-08  Score=74.71  Aligned_cols=66  Identities=21%  Similarity=0.405  Sum_probs=57.0

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722          114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV  187 (437)
Q Consensus       114 ~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a  187 (437)
                      .++++|++.|+||||++++++++|+++|+||.+++..+.++.....+.|+.+        +..+++|++.|.+.
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~l   68 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLL   68 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999888888863        34567788777643

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.61  E-value=1.7e-07  Score=72.45  Aligned_cols=66  Identities=20%  Similarity=0.254  Sum_probs=54.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722           25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN   97 (437)
Q Consensus        25 ~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~   97 (437)
                      ..++.|+++|+||||++++++++|+++|+||.+++..+.++.+.-.+.|.-   .    +...++++..|...
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~---~----~~~~~~l~~~L~~l   68 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG---S----PSNITRVETTLPLL   68 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE---C----HHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc---C----cccHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999998876666642   2    23456677776554

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.48  E-value=4.5e-07  Score=69.47  Aligned_cols=63  Identities=21%  Similarity=0.299  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722           28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVET   96 (437)
Q Consensus        28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~   96 (437)
                      +.|++.|+||||++++++++|+++|+||.+.+.++.++.+.-.+.+..+.+..      .+.|+++|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~------~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQD------FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCC------HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCC------HHHHHHHHHH
Confidence            57999999999999999999999999999999999888776666665443321      2445555544

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.47  E-value=2.9e-07  Score=70.59  Aligned_cols=64  Identities=14%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV  187 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a  187 (437)
                      ++|++.|+||||++++|+++|+++|+||.+.+-.+.++...-.+.+..+ .+.   +   .+.|+++|...
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~~---~---~~~l~~~l~~l   66 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EKQ---D---FTYLRNEFEAF   66 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SCC---C---HHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cCC---C---HHHHHHHHHHH
Confidence            6899999999999999999999999999999999988887777777764 222   2   25677776643

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.12  E-value=3e-06  Score=66.16  Aligned_cols=67  Identities=13%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCc----eeEEEEE----EEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNA----RAAALLH----VKDQSSGCAIEDQKRLLKIKKLLCN  186 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~----~~~d~F~----V~~~~~g~~~~~~~~~~~l~~~L~~  186 (437)
                      ....|+|.|+|||||+++|+++|+++|+||.+.+..|..+    ...+.|.    +.-| .+      .....|+++|..
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p-~~------~~~~~l~~~l~~   77 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SG------CNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TT------SCHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcC-cc------ccHHHHHHHHHH
Confidence            3456889999999999999999999999999999877443    2233453    3333 11      224677777764


Q ss_pred             hh
Q 013722          187 VL  188 (437)
Q Consensus       187 aL  188 (437)
                      ..
T Consensus        78 l~   79 (93)
T d1u8sa2          78 LC   79 (93)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.89  E-value=4.4e-05  Score=59.27  Aligned_cols=37  Identities=14%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe
Q 013722           27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD   63 (437)
Q Consensus        27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~   63 (437)
                      ...|+|.|+|||||+++++++|+++|+||.+.+-.+.
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~   42 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI   42 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccc
Confidence            4689999999999999999999999999999888763

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.88  E-value=2e-05  Score=58.20  Aligned_cols=47  Identities=11%  Similarity=0.048  Sum_probs=43.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEc
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTD  373 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d  373 (437)
                      +|.|..+|+||-|++++++|.++||||++..+...++++.-+|.+.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57899999999999999999999999999999988999988888854

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=8e-05  Score=55.85  Aligned_cols=61  Identities=26%  Similarity=0.328  Sum_probs=48.4

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHH
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQH  389 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~  389 (437)
                      ++.+-+.-.|+||+|++|+.+|.++|+||.+..+.+.  |+.|.-++.+ |   ++++++..++|++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v-D---~~~~~~vl~~I~~   65 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL-D---QDVPDDVRTAIAA   65 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE-S---SCCCHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc-C---CCccHHHHHHHHc
Confidence            5688899999999999999999999999999998764  6677766665 3   2566555555554

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.75  E-value=3.9e-05  Score=56.58  Aligned_cols=47  Identities=15%  Similarity=0.243  Sum_probs=42.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722          118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD  164 (437)
Q Consensus       118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~  164 (437)
                      +|.|..+|+||-|++++++|.++|+||+...++..++.+.-+|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57888999999999999999999999999999988888887787765

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.54  E-value=0.00015  Score=53.07  Aligned_cols=46  Identities=15%  Similarity=0.226  Sum_probs=40.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT  372 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~  372 (437)
                      -+.|...||||.|++|+.+|+++|+||.+..+....+.+.=.|.|.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            3789999999999999999999999999999988777777677553

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=0.00032  Score=52.41  Aligned_cols=48  Identities=21%  Similarity=0.365  Sum_probs=40.2

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEE
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHV  162 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V  162 (437)
                      +.+.+.+.-.|+||+++.|+.+|+++|+||...++.+  .++.+.-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            4567888999999999999999999999999999977  45556555554

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.46  E-value=0.00012  Score=53.72  Aligned_cols=48  Identities=6%  Similarity=-0.044  Sum_probs=42.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEcc
Q 013722          249 AVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHV  296 (437)
Q Consensus       249 ~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~  296 (437)
                      ++.|+..||||.+++++..|++.|+||....+..+.++.+-.++|.++
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~~   52 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDP   52 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCH
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECCh
Confidence            689999999999999999999999999999998888777778877654

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.43  E-value=4.5e-05  Score=57.14  Aligned_cols=48  Identities=8%  Similarity=0.303  Sum_probs=35.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEE--EEEEEe
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAA--LLHVKD  164 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d--~F~V~~  164 (437)
                      ..|.|.+.||||+|++|+.+++++++||......+ ..|.+..  .+++.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            35889999999999999999999999999999887 5555544  445555

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.39  E-value=8.2e-05  Score=55.65  Aligned_cols=61  Identities=21%  Similarity=0.323  Sum_probs=40.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-Ce--EEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RK--VKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~--a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      -|.|.+.||||+|++|+.+|+++|+||.+....|.. +.  ..-.|++.+..+      +.++|-+.|.+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~------~l~~ll~kL~~   66 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG------DFEKILERVKT   66 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS------CHHHHHHHHHT
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcc------cHHHHHHHHHc
Confidence            488999999999999999999999999999877642 23  344666654321      24556666665

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=0.00068  Score=50.43  Aligned_cols=65  Identities=15%  Similarity=0.304  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCce-eEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNAR-AAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~-~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      .+.+.+...|+||+|++|++.|+..|+||.+..+.. .... ..-++.+..        +++..+++.+.|.+..
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g--------~~~~i~qi~kQl~Kli   69 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG--------DDKTIEQIEKQAYKLV   69 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE--------CTTHHHHHHHHHTTST
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc--------CHHHHHHHHHHHhCCc
Confidence            357899999999999999999999999999999875 3322 333334433        2345677777776543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.27  E-value=0.00058  Score=50.69  Aligned_cols=64  Identities=17%  Similarity=0.220  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      ..+.+...|+||+|++|++.|+..|+||.+..+.- .. +...-++.+..        +++.++++...|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhCCc
Confidence            47889999999999999999999999999999974 33 33444444444        3567788888877544

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00068  Score=50.18  Aligned_cols=65  Identities=18%  Similarity=0.250  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722          117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL  188 (437)
Q Consensus       117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL  188 (437)
                      ..+++...|+||+|++|+++|+..|+||.+..+.- .......+-.+..   |    +++.++++...|.+..
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~---~----~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---G----DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---S----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE---C----CHHHHHHHHHHHhCCC
Confidence            36888899999999999999999999999999974 4333333323333   1    4566788888777543

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.0013  Score=49.56  Aligned_cols=48  Identities=10%  Similarity=0.269  Sum_probs=39.3

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEE
Q 013722          115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHV  162 (437)
Q Consensus       115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V  162 (437)
                      ....+.+.-.|+||+|++|+.+|+++|+||.+....+.++.+..+..+
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            446788889999999999999999999999999988866554444333

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00052  Score=51.09  Aligned_cols=66  Identities=15%  Similarity=0.352  Sum_probs=49.9

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCe--EEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRK--VKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV  398 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~--a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~  398 (437)
                      +.|.+...|+||+|++|+..|...|.||.+..+...-+.  ..-++.+.   |   +++..+++.++|.+ +.+|
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~---g---~~~~i~qi~kQl~K-lidV   71 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK---G---DDKTIEQIEKQAYK-LVEV   71 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE---E---CTTHHHHHHHHHTT-STTE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE---c---CHHHHHHHHHHHhC-CcCE
Confidence            578999999999999999999999999999998765433  33344442   2   23567888888888 4444

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00088  Score=49.55  Aligned_cols=64  Identities=17%  Similarity=0.345  Sum_probs=47.9

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      ..+.+...|+||+|++|+..|+..|.||.+..+.-.-....-.|.++-. |   +++..+++..+|.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~-~---~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G---DEKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S---CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhC
Confidence            3688999999999999999999999999999987443333323434321 1   34667888888888

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.95  E-value=0.00079  Score=49.95  Aligned_cols=66  Identities=18%  Similarity=0.341  Sum_probs=50.1

Q ss_pred             cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722          326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV  398 (437)
Q Consensus       326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~  398 (437)
                      ..|.+...|+||+|++|+..|+..|.||.+..+...  .+-..-++.+..      +++..+++..+|.+ +.+|
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~------~~~~i~qi~kQL~K-lvdV   70 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNK-LIEV   70 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHH-STTE
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC------CHHHHHHHHHHHhC-CcCE
Confidence            368899999999999999999999999999999743  233444554432      24567888888888 4444

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.014  Score=43.57  Aligned_cols=43  Identities=14%  Similarity=0.210  Sum_probs=36.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEE
Q 013722           26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLM   68 (437)
Q Consensus        26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~   68 (437)
                      +...+.+.-.|+||.+++|+.+|+++|+||.+-...+.++...
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~   52 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGY   52 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcE
Confidence            3468888899999999999999999999999988887665443

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.33  E-value=0.0051  Score=45.80  Aligned_cols=61  Identities=15%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             EEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          330 LYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       330 v~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      +...|+||-|+++-..|+++|||+.+-.-.....+-++ .|||. .+|.. ++ ..+++-+.|..
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id-~~g~~-~~-~~~~~l~~L~~   68 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQ-ADSAI-TT-DIKKVIAILET   68 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEE-ESCCS-CH-HHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EecCC-cH-HHHHHHHHHHH
Confidence            34469999999999999999999998877766555444 78884 45643 43 34444444544

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.08  E-value=0.027  Score=43.25  Aligned_cols=66  Identities=15%  Similarity=0.283  Sum_probs=47.3

Q ss_pred             CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722          325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVDPKIVDSIQHQIGR  393 (437)
Q Consensus       325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~~~~~~~l~~~L~~  393 (437)
                      .|.|-+...|+||-|+++-.+|+++|||+.+-.-......-+. .||| |.+|..  ++..+.+-..|..
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~~--~~~i~~~l~~L~~   82 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKRT--KPVLGSIIKSLRN   82 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGGG--HHHHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccCC--hHHHHHHHHHHHH
Confidence            4778888899999999999999999999987776655544444 7888 556652  3334444444543

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.69  E-value=0.35  Score=35.24  Aligned_cols=46  Identities=17%  Similarity=0.206  Sum_probs=36.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCce-eEEEEEEEe
Q 013722          119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR-AAALLHVKD  164 (437)
Q Consensus       119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~-~~d~F~V~~  164 (437)
                      +.+...|+||-|+++-..|+++|+|+...+..-..+. ..=.|+|.-
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~   51 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA   51 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            3344579999999999999999999999998764444 566788877

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.32  E-value=0.12  Score=39.36  Aligned_cols=52  Identities=10%  Similarity=0.069  Sum_probs=41.9

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEe
Q 013722          113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKD  164 (437)
Q Consensus       113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~  164 (437)
                      ....|.|.+..+|+||-|+++-.+|+++|+|+......... ....=.|||.-
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~   65 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL   65 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence            34568888888999999999999999999999988887633 33455677765

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.63  E-value=1.4  Score=30.68  Aligned_cols=45  Identities=7%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             EEEEEe---CCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722          118 SIELTG---TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD  164 (437)
Q Consensus       118 ~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~  164 (437)
                      .|++.|   .++||+.+++..+|+++|+||.-..-.+.  ...-.|.|..
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~S--e~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS--EVNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSC--SSEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCc--cceEEEEEeH
Confidence            577777   58999999999999999999987664431  1334455554

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.26  E-value=0.52  Score=35.18  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=30.7

Q ss_pred             ceEEEEEEe---CCCcchHHHHHHHHHhCCCeEEEEE
Q 013722          115 EYTSIELTG---TDRPGLLSEVSAVLTDLSCSVVSAE  148 (437)
Q Consensus       115 ~~t~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~  148 (437)
                      +.+.++|.+   .++||++++|..+|+++|+||.-..
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            577899987   4999999999999999999999876

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.10  E-value=0.57  Score=34.94  Aligned_cols=44  Identities=18%  Similarity=0.320  Sum_probs=33.1

Q ss_pred             cEEEEEe---CCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEc
Q 013722          326 LELELYT---DDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTD  373 (437)
Q Consensus       326 ~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d  373 (437)
                      +.|.|.+   .++||++++|..+|+++||||..-.  |- + ..=.|.|.+
T Consensus        14 a~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is--~S-e-~~is~~v~~   60 (91)
T d2cdqa2          14 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TS-E-VSISLTLDP   60 (91)
T ss_dssp             EEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EE-T-TEEEEEECC
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE--ec-C-CeEEEEEch
Confidence            4677876   5999999999999999999999864  31 1 122577743

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.13  E-value=1.3  Score=30.76  Aligned_cols=59  Identities=14%  Similarity=0.077  Sum_probs=38.8

Q ss_pred             EEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013722           29 VIQVDS---VNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTV   94 (437)
Q Consensus        29 ~I~V~~---~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L   94 (437)
                      .|++.+   +++||+.+++...|++.|+||.--...+..-.  -.|.|.+.+.     ++..+.|.+++
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~--Is~~V~~~d~-----~~Av~~Lh~~F   64 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVN--ISFVIDEKDL-----LNCVRKLHEKF   64 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSE--EEEEEEGGGH-----HHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccce--EEEEEeHHHH-----HHHHHHHHHHH
Confidence            567776   58999999999999999999985444333222  2377754322     23445555544