Citrus Sinensis ID: 013769

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAFSGKSML
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHccccccccccccHHHHHHHHHccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHEEcc
ccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccHHHHHEEEHHHEEccccEHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcHHHHEEHHcHHEcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHcHHccccHEEEEEEc
matsatgqpqfiastggnrsfsnapliknedadqivvpdktswkNLFAYIGPGFLVSIayidpgnfetdlqsgaqYKYELLWIILVASCAALIIQSLAANLGVVTGKHLaehcrneypkvpnFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFfaelgyakpeaKEVLHglfvpqlkgngatGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGavcsssninpedqasckdldlnkASFLLRNVLGSWSSKLFAIALLAsgqsstitgtYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFelpfalvpllkftsskvkmgmhansiafsgksml
matsatgqpqfiastggnrsfSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANsiafsgksml
MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAFSGKSML
*******************************ADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNI******SCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVK****************
*****************************************SWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALV************K*ACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAFSGKSML
********PQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAFSGKSML
***************************KNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAFSGKSML
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
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MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAFSGKSML
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
Q9S9N8527 Metal transporter Nramp6 yes no 0.958 0.795 0.868 0.0
Q9SAH8532 Metal transporter Nramp1 no no 0.988 0.812 0.844 0.0
Q653V6 550 Metal transporter Nramp3 yes no 0.977 0.776 0.804 0.0
Q8H4H5 538 Metal transporter Nramp5 no no 0.919 0.747 0.681 1e-158
Q0D7E4518 Metal transporter Nramp1 no no 0.906 0.764 0.656 1e-153
Q6ZG85 545 Metal transporter NRAT1 O no no 0.917 0.735 0.588 1e-141
Q5QN13550 Metal transporter Nramp4 no no 0.878 0.698 0.475 1e-108
Q869V1533 Metal transporter nramp1 yes no 0.881 0.722 0.449 1e-89
Q98I99454 Divalent metal cation tra yes no 0.906 0.872 0.435 2e-88
P49283 596 Protein Malvolio OS=Droso yes no 0.910 0.667 0.406 8e-87
>sp|Q9S9N8|NRAM6_ARATH Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2 Back     alignment and function desciption
 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/419 (86%), Positives = 397/419 (94%)

Query: 14  STGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSG 73
           ++G NRS SN+PLI+N D++QI+VP+K SWKN F+Y+GPGFLVSIAYIDPGNFETDLQSG
Sbjct: 6   ASGSNRSISNSPLIENSDSNQILVPEKKSWKNFFSYLGPGFLVSIAYIDPGNFETDLQSG 65

Query: 74  AQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAI 133
           AQYKYELLWIILVASCAAL+IQSLAANLGVVTGKHLAEHCR EY KVPNF+LWV+AEIA+
Sbjct: 66  AQYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEHCRAEYSKVPNFMLWVVAEIAV 125

Query: 134 VACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 193
           VACDIPEVIGTAFALNMLF IPVWIGVLLTG STLILLALQQYG+RKLEFLIAFLVFT+A
Sbjct: 126 VACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGIRKLEFLIAFLVFTIA 185

Query: 194 GCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKI 253
            CFF EL Y+KP+ KEVL+GLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKI
Sbjct: 186 LCFFVELHYSKPDPKEVLYGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKI 245

Query: 254 PRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNK 313
           PRSV  IKEACR+Y+IESG AL VAFLINVSVISVSGAVC++S+++PED+ASC+DLDLNK
Sbjct: 246 PRSVTGIKEACRYYLIESGLALMVAFLINVSVISVSGAVCNASDLSPEDRASCQDLDLNK 305

Query: 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCL 373
           ASFLLRNV+G WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRL+PWLRNFLTRCL
Sbjct: 306 ASFLLRNVVGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWLRNFLTRCL 365

Query: 374 AIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAFS 432
           AI+PSLIVALIGGSAGAG+LIIIASMILSFELPFALVPLLKFTSSK KMG HANS+  S
Sbjct: 366 AIIPSLIVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSSKTKMGSHANSLVIS 424
Probable intracellular cadmium (Cd) transporter that participates in the distribution or availability of Cd within the cell.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SAH8|NRAM1_ARATH Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=1 SV=1 Back     alignment and function description
>sp|Q653V6|NRAM3_ORYSJ Metal transporter Nramp3 OS=Oryza sativa subsp. japonica GN=NRAMP3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H4H5|NRAM5_ORYSJ Metal transporter Nramp5 OS=Oryza sativa subsp. japonica GN=NRAMP5 PE=2 SV=1 Back     alignment and function description
>sp|Q0D7E4|NRAM1_ORYSJ Metal transporter Nramp1 OS=Oryza sativa subsp. japonica GN=NRAMP1 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZG85|NRAT1_ORYSJ Metal transporter NRAT1 OS=Oryza sativa subsp. japonica GN=NRAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q5QN13|NRAM4_ORYSJ Metal transporter Nramp4 OS=Oryza sativa subsp. japonica GN=NRAMP4 PE=2 SV=1 Back     alignment and function description
>sp|Q869V1|NRAM1_DICDI Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1 Back     alignment and function description
>sp|Q98I99|MNTH_RHILO Divalent metal cation transporter MntH OS=Rhizobium loti (strain MAFF303099) GN=mntH PE=3 SV=1 Back     alignment and function description
>sp|P49283|MVL_DROME Protein Malvolio OS=Drosophila melanogaster GN=Mvl PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
356523294 545 PREDICTED: metal transporter Nramp1-like 0.981 0.787 0.885 0.0
356526260 550 PREDICTED: metal transporter Nramp6-like 0.981 0.78 0.883 0.0
224115800 541 nramp transporter [Populus trichocarpa] 0.986 0.796 0.886 0.0
255572735 546 metal transporter, putative [Ricinus com 0.979 0.783 0.897 0.0
356550656 544 PREDICTED: metal transporter Nramp6-like 0.979 0.786 0.869 0.0
356557217 546 PREDICTED: metal transporter Nramp6-like 0.979 0.783 0.874 0.0
225465528 541 PREDICTED: metal transporter Nramp6 [Vit 0.961 0.776 0.893 0.0
82581291537 NRAMP family metal transporter [Chengiop 0.986 0.802 0.853 0.0
79346106527 metal transporter Nramp6 [Arabidopsis th 0.958 0.795 0.868 0.0
21554325532 metal ion transporter [Arabidopsis thali 0.988 0.812 0.844 0.0
>gi|356523294|ref|XP_003530275.1| PREDICTED: metal transporter Nramp1-like [Glycine max] Back     alignment and taxonomy information
 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/429 (88%), Positives = 406/429 (94%)

Query: 4   SATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDP 63
           S++GQPQFIASTGGNR+FSNAPLI+N D DQIVVPD T WKNLFAY+GPGFLVSIAYIDP
Sbjct: 6   SSSGQPQFIASTGGNRNFSNAPLIENSDTDQIVVPDTTGWKNLFAYVGPGFLVSIAYIDP 65

Query: 64  GNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123
           GNFETDLQSGAQYKYELLWIILVASCAAL+IQ++AANLGVVTG HLAEHCR EY +VPNF
Sbjct: 66  GNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRAEYSRVPNF 125

Query: 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEF 183
           ILWV+AEIAIVACDIPEVIGTAFALNMLF IPVW+GVLLTGFSTLILLALQQYGVRKLEF
Sbjct: 126 ILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWVGVLLTGFSTLILLALQQYGVRKLEF 185

Query: 184 LIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFL 243
            IAFLVFT+AGCF AELGYAKP AKEV+ GLFVP+L+G+GATGLAISLLGAMVMPHNLFL
Sbjct: 186 FIAFLVFTIAGCFMAELGYAKPVAKEVVAGLFVPKLQGHGATGLAISLLGAMVMPHNLFL 245

Query: 244 HSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQ 303
           HSALVLSRKIPRSVR IKEACRFYMIES FAL VAFLIN+SVISVSGAVC+SSN++ EDQ
Sbjct: 246 HSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCNSSNLSVEDQ 305

Query: 304 ASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKP 363
            SC+DLDLNKASFLLRNVLG WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLK 
Sbjct: 306 NSCQDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKS 365

Query: 364 WLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMG 423
           W+RN LTRCLAIVPSLIVALIGGSAGAG+LIIIASMILSFELPFAL+PLLKFTSSK+KMG
Sbjct: 366 WIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMG 425

Query: 424 MHANSIAFS 432
            H NSI+ S
Sbjct: 426 EHVNSISIS 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356526260|ref|XP_003531736.1| PREDICTED: metal transporter Nramp6-like [Glycine max] Back     alignment and taxonomy information
>gi|224115800|ref|XP_002332060.1| nramp transporter [Populus trichocarpa] gi|222831946|gb|EEE70423.1| nramp transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255572735|ref|XP_002527300.1| metal transporter, putative [Ricinus communis] gi|223533300|gb|EEF35052.1| metal transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356550656|ref|XP_003543701.1| PREDICTED: metal transporter Nramp6-like [Glycine max] Back     alignment and taxonomy information
>gi|356557217|ref|XP_003546914.1| PREDICTED: metal transporter Nramp6-like [Glycine max] Back     alignment and taxonomy information
>gi|225465528|ref|XP_002273263.1| PREDICTED: metal transporter Nramp6 [Vitis vinifera] gi|297745101|emb|CBI38940.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|82581291|dbj|BAE48710.1| NRAMP family metal transporter [Chengiopanax sciadophylloides] Back     alignment and taxonomy information
>gi|79346106|ref|NP_173048.3| metal transporter Nramp6 [Arabidopsis thaliana] gi|30173130|sp|Q9S9N8.2|NRAM6_ARATH RecName: Full=Metal transporter Nramp6; Short=AtNramp6 gi|12666983|emb|CAC28123.1| putative metal transporter [Arabidopsis thaliana] gi|332191269|gb|AEE29390.1| metal transporter Nramp6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21554325|gb|AAM63430.1| metal ion transporter [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2025677532 NRAMP1 "natural resistance-ass 0.988 0.812 0.844 1.7e-194
TAIR|locus:2200437527 NRAMP6 "NRAMP metal ion transp 0.958 0.795 0.868 2.1e-194
UNIPROTKB|Q0D7E4518 NRAMP1 "Metal transporter Nram 0.901 0.760 0.659 9.9e-142
UNIPROTKB|Q6ZG85 545 NRAT1 "Metal transporter NRAT1 0.885 0.710 0.602 5.9e-128
UNIPROTKB|A7MBI9562 SLC11A2 "Uncharacterized prote 0.620 0.482 0.458 2.7e-90
MGI|MGI:1345279 568 Slc11a2 "solute carrier family 0.585 0.450 0.479 5e-89
DICTYBASE|DDB_G0275815629 nramp2 "putative manganese tra 0.954 0.662 0.426 1.1e-85
DICTYBASE|DDB_G0276973533 nramp1 "solute carrier family 0.885 0.726 0.449 8e-85
FB|FBgn0011672 596 Mvl "Malvolio" [Drosophila mel 0.663 0.486 0.444 4e-83
TAIR|locus:2045344509 NRAMP3 "natural resistance-ass 0.858 0.736 0.442 6.5e-83
TAIR|locus:2025677 NRAMP1 "natural resistance-associated macrophage protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1884 (668.3 bits), Expect = 1.7e-194, P = 1.7e-194
 Identities = 365/432 (84%), Positives = 400/432 (92%)

Query:     1 MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAY 60
             MA + +G+ QFI+S+GGNRSFSN+PLI+N D++QI+V +K SWKN FAY+GPGFLVSIAY
Sbjct:     1 MAATGSGRSQFISSSGGNRSFSNSPLIENSDSNQIIVSEKKSWKNFFAYLGPGFLVSIAY 60

Query:    61 IDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV 120
             IDPGNFETDLQ+GA YKYELLWIILVASCAAL+IQSLAANLGVVTGKHLAE CR EY KV
Sbjct:    61 IDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKV 120

Query:   121 PNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRK 180
             PNF+LWV+AEIA+VACDIPEVIGTAFALNMLF IPVWIGVLLTG STLILLALQ+YGVRK
Sbjct:   121 PNFMLWVVAEIAVVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQKYGVRK 180

Query:   181 LEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240
             LEFLIAFLVFT+A CFF EL Y+KP+  EVLHGLFVPQLKGNGATGLAISLLGAMVMPHN
Sbjct:   181 LEFLIAFLVFTIAICFFVELHYSKPDPGEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240

Query:   241 LFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINP 300
             LFLHSALVLSRKIPRS   IKEACRFY+IESG AL VAFLINVSVISVSGAVC++ N++P
Sbjct:   241 LFLHSALVLSRKIPRSASGIKEACRFYLIESGLALMVAFLINVSVISVSGAVCNAPNLSP 300

Query:   301 EDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR 360
             ED+A+C+DLDLNKASFLLRNV+G WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR
Sbjct:   301 EDRANCEDLDLNKASFLLRNVVGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR 360

Query:   361 LKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKV 420
             L+PWLRN LTRCLAI+PSLIVALIGGSAGAG+LIIIASMILSFELPFALVPLLKFTS K 
Sbjct:   361 LEPWLRNLLTRCLAIIPSLIVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSCKT 420

Query:   421 KMGMHANSIAFS 432
             KMG H N +A +
Sbjct:   421 KMGSHVNPMAIT 432
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0005381 "iron ion transmembrane transporter activity" evidence=IGI
GO:0034755 "iron ion transmembrane transport" evidence=IGI
GO:0005384 "manganese ion transmembrane transporter activity" evidence=IMP;IDA;TAS
GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA
GO:0070574 "cadmium ion transmembrane transport" evidence=IDA
GO:0071421 "manganese ion transmembrane transport" evidence=IDA
GO:0006828 "manganese ion transport" evidence=RCA;TAS
GO:0006875 "cellular metal ion homeostasis" evidence=NAS
GO:0015691 "cadmium ion transport" evidence=RCA;TAS
GO:0015692 "lead ion transport" evidence=TAS
GO:0030001 "metal ion transport" evidence=TAS
GO:0046873 "metal ion transmembrane transporter activity" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0055071 "manganese ion homeostasis" evidence=IMP
GO:0000041 "transition metal ion transport" evidence=RCA
TAIR|locus:2200437 NRAMP6 "NRAMP metal ion transporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0D7E4 NRAMP1 "Metal transporter Nramp1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZG85 NRAT1 "Metal transporter NRAT1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBI9 SLC11A2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1345279 Slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275815 nramp2 "putative manganese transporter" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276973 nramp1 "solute carrier family 11 member 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0011672 Mvl "Malvolio" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2045344 NRAMP3 "natural resistance-associated macrophage protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S9N8NRAM6_ARATHNo assigned EC number0.86870.95880.7950yesno
Q8PKX1MNTH_XANACNo assigned EC number0.42890.88320.8693yesno
Q2G2G3MNTH_STAA8No assigned EC number0.40380.92670.9yesno
A0AIM7MNTH_LISW6No assigned EC number0.42750.91530.8928yesno
P65545MNTH_BRUSUNo assigned EC number0.42370.85810.8223yesno
Q6GAA9MNTH_STAASNo assigned EC number0.40380.92670.9yesno
Q92BT1MNTH_LISINNo assigned EC number0.42650.91760.8950yesno
Q931T9MNTH_STAAMNo assigned EC number0.40140.92670.9yesno
Q71ZP6MNTH_LISMFNo assigned EC number0.42750.91530.8928yesno
Q99UZ7MNTH_STAANNo assigned EC number0.40380.92670.9yesno
Q5HGX9MNTH_STAACNo assigned EC number0.40380.92670.9yesno
Q8Y773MNTH_LISMONo assigned EC number0.42750.91530.8928yesno
Q89K67MNTH_BRAJANo assigned EC number0.44100.86490.84yesno
A6QFW1MNTH_STAAENo assigned EC number0.40380.92670.9yesno
Q9SAH8NRAM1_ARATHNo assigned EC number0.84490.98850.8120nono
Q8ZSB0MNTH_NOSS1No assigned EC number0.44820.89470.8846yesno
A5IRZ2MNTH_STAA9No assigned EC number0.40380.92670.9yesno
Q8UEM1MNTH_AGRT5No assigned EC number0.42560.86490.8199yesno
Q98I99MNTH_RHILONo assigned EC number0.43550.90610.8722yesno
Q7A166MNTH_STAAWNo assigned EC number0.40380.92670.9yesno
P65544MNTH_BRUMENo assigned EC number0.42370.85810.8223yesno
Q653V6NRAM3_ORYSJNo assigned EC number0.80410.97710.7763yesno
A6U0S3MNTH_STAA2No assigned EC number0.40380.92670.9yesno
B8DE85MNTH_LISMHNo assigned EC number0.42750.91530.8928yesno
C1L2Y0MNTH_LISMCNo assigned EC number0.42750.91530.8928yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_208000030
nramp transporter (541 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
PRK00701439 PRK00701, PRK00701, manganese transport protein Mn 1e-153
TIGR01197390 TIGR01197, nramp, NRAMP (natural resistance-associ 1e-131
pfam01566364 pfam01566, Nramp, Natural resistance-associated ma 1e-128
COG1914416 COG1914, MntH, Mn2+ and Fe2+ transporters of the N 1e-102
>gnl|CDD|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed Back     alignment and domain information 
 Score =  440 bits (1135), Expect = e-153
 Identities = 178/399 (44%), Positives = 257/399 (64%), Gaps = 12/399 (3%)

Query: 34  QIVVPDKTS-WKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL 92
            + V    S WK L A++GP FLV++ Y+DPGN+ T++Q G+Q+ Y LLW+IL+++  A+
Sbjct: 20  SVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAM 79

Query: 93  IIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF 152
           ++QSL+A LG+ TG+ LA+ CR+ YP+   + LW+ AE+AI+A D+ EVIG A AL +LF
Sbjct: 80  LLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139

Query: 153 KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLH 212
            IP+  G L+T   T ++L LQ+ G R LE +I  L+  +A  F  EL  A+P+   VL 
Sbjct: 140 GIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLK 199

Query: 213 GLFVPQ---LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMI 269
           G F+P    L    A  LA  +LGA VMPHNL+LHS+LV +R + R+    +EA RF  I
Sbjct: 200 G-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREALRFTRI 258

Query: 270 ESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKL 329
           +S  AL +A  +N +++ ++ A   +S             D+  A  LL  +LG+ ++ L
Sbjct: 259 DSAIALTIAGFVNAAMLILAAAAFHASGHTDVA-------DIEDAYLLLSPLLGAAAATL 311

Query: 330 FAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAG 389
           F IALLASG SST+ GT AGQ VM+GFL LR+  W+R  +TR LA+VP+LIV L+GG   
Sbjct: 312 FGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELD 371

Query: 390 AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANS 428
             +L++++ ++LSF LPFAL+PLL FTS +  MG   N 
Sbjct: 372 PTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNP 410

Length = 439
>gnl|CDD|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein Back     alignment and domain information
>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
PRK00701439 manganese transport protein MntH; Reviewed 100.0
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 100.0
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 100.0
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 100.0
PF01566358 Nramp: Natural resistance-associated macrophage pr 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 98.94
TIGR00813407 sss transporter, SSS family. have different number 98.91
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.89
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.74
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.74
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.71
PRK15132403 tyrosine transporter TyrP; Provisional 98.7
PRK15419502 proline:sodium symporter PutP; Provisional 98.66
PRK13629443 threonine/serine transporter TdcC; Provisional 98.63
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.61
PRK09395551 actP acetate permease; Provisional 98.59
PRK12488549 acetate permease; Provisional 98.58
PRK09664415 tryptophan permease TnaB; Provisional 98.53
PRK10483414 tryptophan permease; Provisional 98.52
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.5
TIGR00814397 stp serine transporter. The HAAAP family includes 98.48
PRK10249458 phenylalanine transporter; Provisional 98.48
PRK11375484 allantoin permease; Provisional 98.44
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.42
TIGR00837381 araaP aromatic amino acid transport protein. aroma 98.4
PRK11387471 S-methylmethionine transporter; Provisional 98.37
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.31
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.23
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.2
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.15
PRK10484523 putative transporter; Provisional 98.14
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 98.12
COG3949349 Uncharacterized membrane protein [Function unknown 98.11
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.07
COG1457442 CodB Purine-cytosine permease and related proteins 98.06
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 98.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 97.92
PRK11021410 putative transporter; Provisional 97.9
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 97.89
PRK11357445 frlA putative fructoselysine transporter; Provisio 97.88
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.87
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.87
TIGR00909429 2A0306 amino acid transporter. 97.85
PRK15049499 L-asparagine permease; Provisional 97.83
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.77
TIGR00908442 2A0305 ethanolamine permease. The three genes used 97.75
PRK10238456 aromatic amino acid transporter; Provisional 97.72
PRK11017404 codB cytosine permease; Provisional 97.72
COG4147529 DhlC Predicted symporter [General function predict 97.71
TIGR00907482 2A0304 amino acid permease (GABA permease). 97.54
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.49
PRK10580457 proY putative proline-specific permease; Provision 97.45
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 97.41
PRK10197446 gamma-aminobutyrate transporter; Provisional 97.38
PRK10655438 potE putrescine transporter; Provisional 97.24
TIGR00913478 2A0310 amino acid permease (yeast). 97.24
PRK10746461 putative transport protein YifK; Provisional 97.15
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 97.13
TIGR00906 557 2A0303 cationic amino acid transport permease. 97.08
PRK10644445 arginine:agmatin antiporter; Provisional 97.07
TIGR00911501 2A0308 L-type amino acid transporter. 96.86
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 96.78
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 96.65
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 96.62
PRK15433439 branched-chain amino acid transport system 2 carri 96.39
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 96.27
PRK10836489 lysine transporter; Provisional 96.0
TIGR00930 953 2a30 K-Cl cotransporter. 95.97
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 95.5
TIGR00912359 2A0309 spore germination protein (amino acid perme 95.45
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 95.37
COG0531466 PotE Amino acid transporters [Amino acid transport 95.31
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 94.29
COG0833541 LysP Amino acid transporters [Amino acid transport 92.94
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 92.93
KOG1289550 consensus Amino acid transporters [Amino acid tran 92.17
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 91.12
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 90.68
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 87.88
PF03845320 Spore_permease: Spore germination protein; InterPr 87.19
KOG1286 554 consensus Amino acid transporters [Amino acid tran 86.45
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 86.07
PRK15015 701 carbon starvation protein A; Provisional 85.03
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=8.8e-82  Score=651.35  Aligned_cols=411  Identities=43%  Similarity=0.750  Sum_probs=374.6

Q ss_pred             CCCCCCCCCccccCCcccccCCcchHHHHHHhhhhHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013769           18 NRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSL   97 (437)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~   97 (437)
                      +|+..+.|+..+.|.+....++++.+|++++.+|||++++++|+|||+++|++++||+|||+|+|++++++++++++||+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~   84 (439)
T PRK00701          5 PRTATAPFSLSEVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSL   84 (439)
T ss_pred             cccccCCCChhhhcccccCCCcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777666655556667789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcc
Q 013769           98 AANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYG  177 (437)
Q Consensus        98 ~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~  177 (437)
                      ++|+|++|||++.|.|||||||+++|+.|+..++++++++++|++|+++++|+++|+|.+++++++++.+++++++.+++
T Consensus        85 ~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~~~  164 (439)
T PRK00701         85 SAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRG  164 (439)
T ss_pred             HhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999998887766666555667


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccc---cCCCChHHHHHHHhccchhhHHHHHHHHHHhhccCC
Q 013769          178 VRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQ---LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIP  254 (437)
Q Consensus       178 y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~~~v~~g~~~P~---~p~~~~~~~~valiG~ti~p~~~f~~ssl~~~k~~~  254 (437)
                      ||++||+++.++.+|.+||+++++.++|||+|+++| ++|+   +|+++....++|++|+|++||++|+||++++||+++
T Consensus       165 y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~  243 (439)
T PRK00701        165 FRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVG  243 (439)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999 8999   886556788999999999999999999999888655


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCccccccccHHHHHHHHHHhHhHHHHHHHHHH
Q 013769          255 RSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNIN-PEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIA  333 (437)
Q Consensus       255 ~~~~~~~~~~~~~~~d~~~g~~~~~~i~~~i~i~aA~vl~~~g~~-~~~~~~~~~~~~~~~a~~l~~~lG~~a~~lF~ig  333 (437)
                      +++++.++++|++|+|+.+|+.+++++|.++++++|+++|++|.+ ++        +..|++++|||.+|++++++|++|
T Consensus       244 ~~~~~~~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~~~--------~~~~~a~~L~p~~G~~a~~lFaiG  315 (439)
T PRK00701        244 RTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVA--------DIEDAYLLLSPLLGAAAATLFGIA  315 (439)
T ss_pred             CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcC--------CHHHHHHHHHHHHhHHHHHHHHHH
Confidence            555566778999999999999999999999999999999988754 22        578999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhhHHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhHHHHHHHHHH
Q 013769          334 LLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLL  413 (437)
Q Consensus       334 l~aa~fss~i~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~~g~~~~~~Ll~~a~v~~~i~LP~~~~~ll  413 (437)
                      +++|+++|++++++++++++|++++++.+++.||..++.+.++|++++.++.+..+|.++++++|++|++.+|++++|++
T Consensus       316 L~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aqv~~~i~LP~~~~~ll  395 (439)
T PRK00701        316 LLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQVVLSFGLPFALIPLL  395 (439)
T ss_pred             HHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888888888888899887766544346999999999999999999999999


Q ss_pred             HHhcCccccCCCCCchhhHHhhcC
Q 013769          414 KFTSSKVKMGMHANSIAFSGKSML  437 (437)
Q Consensus       414 ~l~n~k~img~~rn~~~~~~l~~~  437 (437)
                      +++|||++||||||+++.|+++|+
T Consensus       396 ~l~~~~~imG~~~~~~~~~~~~~~  419 (439)
T PRK00701        396 LFTSDRKLMGELVNPRWVKIIAWI  419 (439)
T ss_pred             HHHCCHHhhccchhhHHHHHHHHH
Confidence            999999999999999999999884

>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 66/451 (14%), Positives = 128/451 (28%), Gaps = 167/451 (37%)

Query: 25  PLIKNEDADQIV-VPDKTS------W------KNLFA-YIGP------GFLVS-IA--YI 61
            ++  E+ D I+   D  S      W      + +   ++         FL+S I     
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 62  DPG-----------NFETDLQSGAQY---KYELLWIILVASCAALIIQSLAANLGVV--- 104
            P                D Q  A+Y   + +    +  A      +  L     V+   
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------LLELRPAKNVLIDG 157

Query: 105 ---TGKH-LA-EHCRNE--YPKVPNFILWVLAEIAIVACDIPEVIGTAFALNML------ 151
              +GK  +A + C +     K+   I W    + +  C+ PE +     L ML      
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETV-----LEMLQKLLYQ 208

Query: 152 ------------FKIPVWIGVLLTGFSTLILLALQQY--------GVRKLEFLIAF---- 187
                         I + I  +        LL  + Y         V+  +   AF    
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 188 --LVFTMAGCFFAEL---------------GYAKPEAKEVLHGLFV-------PQ--LKG 221
             L+ T        L                    E K +L   ++       P+  L  
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTT 325

Query: 222 NGATGLAISLLGAMVMPH----NLFLHSAL-VLSRKIPRSVRSIK--EACRFYMIESGFA 274
           N      +S++   +       + + H     L+  I  S+  ++  E  + +       
Sbjct: 326 N---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-----R 377

Query: 275 LAVAFLINVSV-ISVSGAV-CSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAI 332
           L+V F  +  +   +   +       +     +     L+K S + +             
Sbjct: 378 LSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQ------------ 420

Query: 333 ALLASGQSSTITGTYAGQYVMQGFLDLRLKP 363
                 + STI        +   +L+L++K 
Sbjct: 421 -----PKESTI-------SIPSIYLELKVKL 439
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.84
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.51
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.26
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.24
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.22
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 97.92
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 88.9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
Probab=98.84  E-value=1.4e-05  Score=83.65  Aligned_cols=133  Identities=11%  Similarity=0.044  Sum_probs=82.2

Q ss_pred             HhHhHhhcCCCchhHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHH
Q 013769           54 FLVSIAYIDPGNFETDLQSGAQYKY---ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAE  130 (437)
Q Consensus        54 ~l~a~a~ig~G~i~t~~~aGA~~Gy---~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~  130 (437)
                      .+.....+..+++.......+  |.   +.++.+++++++...+.-..++.|..+|.+-.+..|..||++.+.+.-+...
T Consensus        34 ~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~  111 (501)
T 2jln_A           34 AIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKA  111 (501)
T ss_dssp             HHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHH
Confidence            455555666666655544443  43   3456777888888888888999999999999999999999988776544444


Q ss_pred             HHHHHhhHHHHHHHHHHHHHhh----Cch-hHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 013769          131 IAIVACDIPEVIGTAFALNMLF----KIP-VWIGVLLTGFSTLILLALQQYGVRKLEFLIAFL  188 (437)
Q Consensus       131 l~~~~~~~~~~~G~a~~l~ll~----gip-~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~l  188 (437)
                      +..+....-+....+.+++.++    |.+ .+++.++..++..++.+.+-+..+++|++...+
T Consensus       112 i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~  174 (501)
T 2jln_A          112 LLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPV  174 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            4444433334344444444443    776 566666665544444433332244555554433
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00