Citrus Sinensis ID: 013813
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 436 | 2.2.26 [Sep-21-2011] | |||||||
| Q8C2P3 | 475 | tRNA-dihydrouridine(16/17 | yes | no | 0.642 | 0.589 | 0.464 | 6e-77 | |
| Q8K582 | 438 | tRNA-dihydrouridine(16/17 | yes | no | 0.642 | 0.639 | 0.468 | 1e-76 | |
| Q6P1R4 | 473 | tRNA-dihydrouridine(16/17 | yes | no | 0.642 | 0.591 | 0.468 | 3e-76 | |
| Q9HGN6 | 399 | tRNA-dihydrouridine(16/17 | yes | no | 0.658 | 0.719 | 0.449 | 4e-70 | |
| P53759 | 423 | tRNA-dihydrouridine(16/17 | yes | no | 0.674 | 0.695 | 0.428 | 4e-66 | |
| O95620 | 317 | tRNA-dihydrouridine(20a/2 | no | no | 0.518 | 0.712 | 0.409 | 7e-44 | |
| Q32M08 | 324 | tRNA-dihydrouridine(20a/2 | no | no | 0.518 | 0.697 | 0.409 | 1e-42 | |
| Q09504 | 284 | Uncharacterized tRNA-dihy | no | no | 0.637 | 0.978 | 0.328 | 4e-39 | |
| O74553 | 326 | tRNA-dihydrouridine(20a/2 | no | no | 0.527 | 0.705 | 0.395 | 1e-38 | |
| Q06063 | 367 | tRNA-dihydrouridine(20a/2 | no | no | 0.532 | 0.632 | 0.372 | 1e-38 |
| >sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 139/299 (46%), Positives = 195/299 (65%), Gaps = 19/299 (6%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: - |
| >sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 194/299 (64%), Gaps = 19/299 (6%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 193/299 (64%), Gaps = 19/299 (6%)
Query: 97 WTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ R + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 137/305 (44%), Positives = 194/305 (63%), Gaps = 18/305 (5%)
Query: 97 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAT--C 154
+ K+GRPK I+APMVD SELP+R+L RR GA+ Y+PM HSR+F ESE YRN+ F+T
Sbjct: 12 YNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTI 71
Query: 155 KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 214
E+RPL +QFC NDPEI+L AA+ PYCD VD+NLGCPQ IA++G YG+FL +N L++
Sbjct: 72 PEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131
Query: 215 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
S++ KL L++PV+ KIR+FP+ Q T+ YAKM+ AG S+LAVHGR R++K AD
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIAD 191
Query: 275 WNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332
W I+ ++ L + ANGN+ H +D+ +C++ TG +GVLSAE L NP +F
Sbjct: 192 WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLP---- 247
Query: 333 EWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV-----PWRMIRSHVHKLLGEWFRIQPG 387
S ++ +D D+ EYL + ++ + I+ H+ KL+ I
Sbjct: 248 ---PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTD 302
Query: 388 VREDL 392
+R L
Sbjct: 303 IRSKL 307
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 193/313 (61%), Gaps = 19/313 (6%)
Query: 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAT---CK 155
K+GRP IVAPMVD SEL +R+L RRYGA AYTPMLH+++F S+KYR + +++
Sbjct: 25 KIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSS 84
Query: 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 215
DRPL VQFCANDPE LL AA+ VE CD VD+NLGCPQ IA++G+YG+FLM+ L+ +
Sbjct: 85 VDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHN 144
Query: 216 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 275
L+ L NL VPV+ KIR+F + + ++ YAKM+ DAG L VHGR R++K K A+W
Sbjct: 145 LINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANW 204
Query: 276 NAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP +F +T
Sbjct: 205 ETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQTK- 263
Query: 334 WIVGSEEISKDGNLDQADLLV-EYLKL---CEKYPVPWRMIRSHVHKLLGEWFRIQPGVR 389
+K+ + D ++ EY ++ C++ ++SH K+L + +R
Sbjct: 264 --------NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIR 315
Query: 390 EDLNAQN-RLTFE 401
L N + T+E
Sbjct: 316 STLATMNAKATWE 328
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U16 and U17 in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 141/232 (60%), Gaps = 6/232 (2%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPL 160
G+ + APMV S+L FR L R+Y + YTPM+ + F +S K R+ EF T + D PL
Sbjct: 25 GQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPL 84
Query: 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
VQF AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +V+++
Sbjct: 85 IVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQV 144
Query: 221 ALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
+ P VS KIR+ +L+ T+ + E G S + VHGRT +E+ +++
Sbjct: 145 RNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQP---VHYDS 201
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
IK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG+
Sbjct: 202 IKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY 253
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus4l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 137/232 (59%), Gaps = 6/232 (2%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPL 160
G+ + APMV S+L FR L R+Y + YTPM+ + F S K R+ EF T + D PL
Sbjct: 25 GQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPL 84
Query: 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
VQF AND +L +AA V PY + +DIN GCPQR A YGA L++ LV +V ++
Sbjct: 85 IVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQV 144
Query: 221 ALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
+ P VS KIR+ +L TI + E G S + VHGRT +E+ ++A
Sbjct: 145 RNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQP---VHYDA 201
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
IK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 202 IKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 158/304 (51%), Gaps = 26/304 (8%)
Query: 110 MVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDP 169
MV S+L FR L R Y + +TPM++++ F ESEK R+ E + C+ D PL VQF +DP
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60
Query: 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-- 227
+L AA V VD+N GCP+ R +G+ L+ L+ +V + + P
Sbjct: 61 FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 228 -VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 286
VS KIR+ +++ T+ + E AG + L VHGRT ++ D A++ VK+++
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEP---IDIQALRIVKDSVS 177
Query: 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGN 346
+P++ANG + E+ E+TG +G+++A LL+NPALFAG
Sbjct: 178 VPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTP------------- 224
Query: 347 LDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN-RLTFE-FLY 404
+D + +++L +Y + W + H+ +L F Q R N N RL + FL
Sbjct: 225 ---SDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQ--RRVFNELNGRLAIDHFLN 279
Query: 405 NLVD 408
NL+D
Sbjct: 280 NLLD 283
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 133/235 (56%), Gaps = 5/235 (2%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
RP I APMV S+LPFR L R Y + YTPM+ ++ F K R +F+T D L
Sbjct: 19 RPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHP-KGRYFDFSTNDADASLI 77
Query: 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE--K 219
+QF +DP IL AA+ V PY D + IN GCPQ A + G+ L+D V LV K
Sbjct: 78 LQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVK 137
Query: 220 LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279
L + KIR+ +L T +++E +G ++ VHGRTR +D F + +AI+
Sbjct: 138 STLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTR--QDRSSFPVNLDAIR 195
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 334
V+ ++IPV+ANG+V+ + + + T +G++SA LLENPALFAG+ W
Sbjct: 196 EVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 0 |
| >sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 130/239 (54%), Gaps = 7/239 (2%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPL 160
GRP I PMV S+LPFR LCR Y + Y+PM+ +R + +E R + +T ED PL
Sbjct: 37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPL 96
Query: 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE-- 218
VQ N+ LL V PYCD + IN GCP + R G L+ N L+ S+V
Sbjct: 97 IVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYNSDLLCSMVHAV 156
Query: 219 KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
K + + KIR+ L +T++ + L DAG + +HGRTR + + A+ +AI
Sbjct: 157 KDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQP--ANLDAI 214
Query: 279 KAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 334
K + + +PV+ANG+ + D+++ + TG GV++ LL NPALFAG+ T W
Sbjct: 215 KYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYTTCPW 273
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U20a and U20b in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 0 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 436 | ||||||
| TAIR|locus:2155528 | 423 | AT5G67220 [Arabidopsis thalian | 0.805 | 0.829 | 0.829 | 9.6e-160 | |
| ZFIN|ZDB-GENE-030131-1435 | 511 | dus1l "dihydrouridine synthase | 0.697 | 0.594 | 0.457 | 4.1e-72 | |
| FB|FBgn0031238 | 505 | CG3645 [Drosophila melanogaste | 0.653 | 0.564 | 0.481 | 5.3e-72 | |
| UNIPROTKB|E2R9L8 | 475 | DUS1L "Uncharacterized protein | 0.642 | 0.589 | 0.468 | 2.9e-71 | |
| UNIPROTKB|J9NYR0 | 584 | DUS1L "Uncharacterized protein | 0.642 | 0.479 | 0.468 | 2.9e-71 | |
| RGD|708389 | 438 | Pp3111 "PP3111 protein" [Rattu | 0.642 | 0.639 | 0.471 | 2.9e-71 | |
| MGI|MGI:1915980 | 475 | Dus1l "dihydrouridine synthase | 0.642 | 0.589 | 0.464 | 6.1e-71 | |
| DICTYBASE|DDB_G0278803 | 435 | dus1l "tRNA-dihydrouridine syn | 0.639 | 0.641 | 0.457 | 7.7e-71 | |
| UNIPROTKB|J3QLE4 | 309 | DUS1L "tRNA-dihydrouridine(16/ | 0.642 | 0.906 | 0.468 | 9.9e-71 | |
| UNIPROTKB|Q6P1R4 | 473 | DUS1L "tRNA-dihydrouridine(16/ | 0.642 | 0.591 | 0.468 | 9.9e-71 |
| TAIR|locus:2155528 AT5G67220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
Identities = 292/352 (82%), Positives = 317/352 (90%)
Query: 72 TASSSLPSPRGYLSGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAY 131
TA +SL SP LS + R ERAWAHW KLGRPK IVAPMVDNSELPFR+LC++YGA+AAY
Sbjct: 57 TAPASLGSPSRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAY 116
Query: 132 TPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLG 191
TPMLHSRIFTE+EKYRN+EF TCKEDRPLFVQFCANDP+ LL AA+RVEPYCDYVDINLG
Sbjct: 117 TPMLHSRIFTETEKYRNQEFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLG 176
Query: 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 251
CPQRIARRGNYGAFLMDNLPLVKSLVEKLA NLNVPVSCKIR+FPNL+DT+KYAKMLEDA
Sbjct: 177 CPQRIARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDA 236
Query: 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311
GCSLLAVHGRTRDEKDGKKFRADW+AIK VKNA+RIPVLANGNVR +EDV C++ETG E
Sbjct: 237 GCSLLAVHGRTRDEKDGKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVE 296
Query: 312 GVLSAESLLENPALFAGFRTAEWIVGSEEIS-KDGNLDQADLLVEYLKLCEKYPVPWRMI 370
GVLSAE+LLENPA FAGFRTAEW +EE DG LDQ DL+VEYLKLCEK+PVPWRMI
Sbjct: 297 GVLSAETLLENPAAFAGFRTAEWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMI 356
Query: 371 RSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKK 422
RSHVHK+LGEWFRI P VRE LNAQN LTFEFLY LVD+LRELG R+PLYKK
Sbjct: 357 RSHVHKMLGEWFRIHPQVREQLNAQNILTFEFLYGLVDQLRELGGRVPLYKK 408
|
|
| ZFIN|ZDB-GENE-030131-1435 dus1l "dihydrouridine synthase 1-like (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 149/326 (45%), Positives = 201/326 (61%)
Query: 76 SLPSPRGYLSGEARAERAWAHWTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM 134
SL P+ +G + W + L + +VAPMVD SEL +R+L RR+GAE YTPM
Sbjct: 22 SLAVPQA-TAGSMTKPLGFEFWRRTLKGARFVVAPMVDQSELAWRLLSRRHGAELCYTPM 80
Query: 135 LHSRIFTESEKYRNEEFAT--CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGC 192
LH+++F YR E + +EDRPL QFCANDPE+ + AA + YCD +D+NLGC
Sbjct: 81 LHAQVFVRDANYRRENLYSEVNQEDRPLITQFCANDPEVFIQAALLAQDYCDAIDLNLGC 140
Query: 193 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 252
PQ IA+RG+YG FL D L++ +++ L+VP++CKIRVFP ++ T+KYAKMLE AG
Sbjct: 141 PQMIAKRGHYGVFLQDEWDLLEKMIKLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAG 200
Query: 253 CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312
C LL VHGRT+D+K A W IKAV+ A+ IPV ANGN++H+ DV C+EETG +G
Sbjct: 201 CQLLTVHGRTKDQKGALTGIASWKHIKAVREAVNIPVFANGNIQHLSDVHHCMEETGVQG 260
Query: 313 VLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY-PVPWRMIR 371
V+SAE L NPALF G W ++ EYL + EK+ P +R
Sbjct: 261 VMSAEGNLHNPALFEGRSPPVW----------------EMAEEYLDIVEKHSPCSLSFVR 304
Query: 372 SHVHKLLGEWFRIQPGVREDL-NAQN 396
+H+ KL +I +REDL A+N
Sbjct: 305 AHIFKLWHHTLQIHQDLREDLAKAKN 330
|
|
| FB|FBgn0031238 CG3645 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 146/303 (48%), Positives = 193/303 (63%)
Query: 98 TKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED 157
+ LG P+ +VAPMVD SEL +RMLCRRYGAE Y+PM H+ +F KYR + TC ED
Sbjct: 23 SSLGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPED 82
Query: 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
RPL +QFC ND + +L+AA + +CD VDINLGCPQ IA+RG+YG+FL D L+ +V
Sbjct: 83 RPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV 142
Query: 218 EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
L L VPV+CKIR+F +L+ TI+YAKMLE AGC LL VHGRTR++K A+WN
Sbjct: 143 STLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNY 202
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 337
IK V+ ++IP+LANGN+ ++DV +CL ETG +GV+SAE L NPA+F G W
Sbjct: 203 IKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGVSPPVW--- 259
Query: 338 SEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG--VREDLNAQ 395
+ EYL+L + +P P IR H+ KL I+ +R+ L
Sbjct: 260 -------------QMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATA 306
Query: 396 NRL 398
N+L
Sbjct: 307 NQL 309
|
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| UNIPROTKB|E2R9L8 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 140/299 (46%), Positives = 194/299 (64%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
|
|
| UNIPROTKB|J9NYR0 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 140/299 (46%), Positives = 194/299 (64%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
|
|
| RGD|708389 Pp3111 "PP3111 protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 141/299 (47%), Positives = 195/299 (65%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W + AD EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W-------------ELAD---EYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
|
|
| MGI|MGI:1915980 Dus1l "dihydrouridine synthase 1-like (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 139/299 (46%), Positives = 195/299 (65%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
|
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| DICTYBASE|DDB_G0278803 dus1l "tRNA-dihydrouridine synthase 1-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 135/295 (45%), Positives = 196/295 (66%)
Query: 100 LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRP 159
L PK VAPMVD++ L FRMLCR+YGA+ YTPM HS+ F + YR + ++TC EDRP
Sbjct: 49 LKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWSTCPEDRP 108
Query: 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
L VQFC N+PE ++ AA+ +E +CD +D+NLGCPQ+IARRGNYG+FL+D ++ +V++
Sbjct: 109 LVVQFCGNEPEWVVKAAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQE 168
Query: 220 LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279
L ++ VP+ CKIR+ PNL DTIK A L++AGC LL +HGRT+++K A+W AI+
Sbjct: 169 LHKHIKVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKGHNSGIANWKAIR 228
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSE 339
++ L IPV+ANG+V ED+ +CLEETG +GV+SAE +L NP+ F+G + +
Sbjct: 229 TIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSFFSGLKVPIY----- 283
Query: 340 EISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNA 394
++++ EY+ E Y + RSH+ K+L E + +RE + A
Sbjct: 284 QVAR-----------EYIDFTEIYKTSIHVTRSHIFKMLKEKLDVYSDLRETMGA 327
|
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| UNIPROTKB|J3QLE4 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 140/299 (46%), Positives = 193/299 (64%)
Query: 97 WTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ R + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
|
|
| UNIPROTKB|Q6P1R4 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 140/299 (46%), Positives = 193/299 (64%)
Query: 97 WTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ R + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019548001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (413 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00032354001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (252 aa) | • | • | • | 0.810 | |||||
 | GSVIVG00018638001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa) | • | 0.619 | |||||||
 | GSVIVG00038090001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa) | • | 0.607 | |||||||
 | GSVIVG00034559001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa) | • | 0.597 | |||||||
 | GSVIVG00021478001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (316 aa) | • | • | 0.577 | ||||||
 | GSVIVG00000661001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa) | • | • | 0.570 | ||||||
 | GSVIVG00026600001 | SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa) | • | 0.555 | |||||||
 | GSVIVG00005498001 | SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa) | • | 0.533 | |||||||
 | GSVIVG00028735001 | SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (477 aa) | • | 0.528 | |||||||
 | GSVIVG00020673001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa) | • | 0.525 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 436 | |||
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 1e-102 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 2e-74 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 7e-73 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 1e-44 | |
| PRK10415 | 321 | PRK10415, PRK10415, tRNA-dihydrouridine synthase B | 4e-27 | |
| TIGR00742 | 318 | TIGR00742, yjbN, tRNA dihydrouridine synthase A | 5e-20 | |
| PRK10550 | 312 | PRK10550, PRK10550, tRNA-dihydrouridine synthase C | 8e-20 | |
| PRK11815 | 333 | PRK11815, PRK11815, tRNA-dihydrouridine synthase A | 6e-12 | |
| cd02803 | 327 | cd02803, OYE_like_FMN_family, Old yellow enzyme (O | 2e-10 | |
| cd02911 | 233 | cd02911, arch_FMN, Archeal FMN-binding domain | 1e-07 | |
| TIGR01037 | 300 | TIGR01037, pyrD_sub1_fam, dihydroorotate dehydroge | 2e-07 | |
| pfam00977 | 230 | pfam00977, His_biosynth, Histidine biosynthesis pr | 6e-06 | |
| cd04732 | 234 | cd04732, HisA, HisA | 3e-05 | |
| COG0106 | 241 | COG0106, HisA, Phosphoribosylformimino-5-aminoimid | 4e-05 | |
| COG0107 | 256 | COG0107, HisF, Imidazoleglycerol-phosphate synthas | 6e-05 | |
| cd04740 | 296 | cd04740, DHOD_1B_like, Dihydroorotate dehydrogenas | 1e-04 | |
| cd04731 | 243 | cd04731, HisF, The cyclase subunit of imidazolegly | 2e-04 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 0.002 | |
| TIGR00736 | 231 | TIGR00736, nifR3_rel_arch, TIM-barrel protein, put | 0.003 | |
| cd02932 | 336 | cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) Yqj | 0.004 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = e-102
Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 4/233 (1%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQ 163
KLI+APMV ++LPFR+LCRRYGA+ YT M+ ++ + R E+RPL VQ
Sbjct: 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQ 60
Query: 164 FCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
+DPE L AA+ VE D +D+N+GCP +G GA L+ + LV +V +
Sbjct: 61 LGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE 120
Query: 223 NLNVPVSCKIRVFPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 281
+ +PV+ KIR+ + ++ T++ AK LEDAG S L VHGRTR++ ADW+ I +
Sbjct: 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ--RYSGPADWDYIAEI 178
Query: 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 334
K A+ IPV+ANG++ +ED +CLE+TG +GV+ L NP LF +
Sbjct: 179 KEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKELLE 231
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-74
Identities = 106/322 (32%), Positives = 163/322 (50%), Gaps = 21/322 (6%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEA-AYTPMLHSRIFTESEKYRNEEFATCKEDRP 159
R ++I+APM ++LPFR L R GA YT M+ ++ K +E+RP
Sbjct: 9 LRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERP 68
Query: 160 LFVQFCANDPEILLNAARRVEPYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
+ VQ +DPE+L AA+ E +D+N GCP +G GA L+ N L+ +V
Sbjct: 69 VAVQLGGSDPELLAEAAKIAE-ELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIV 127
Query: 218 EKL-ALNLNVPVSCKIRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
+ + ++PV+ KIR+ + D ++ A++LEDAG L VHGRTR G AD
Sbjct: 128 KAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTR--AQGYLGPAD 185
Query: 275 WNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W+ IK +K A+ IPV+ANG+++ +ED ++ LE TG +GV+ L NP LF E
Sbjct: 186 WDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLE 245
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYP--VPWRMIRSHVHKLLGEWFRIQPGVRED 391
+ E+ + D+L E+L+L +Y R +R H+ L PG RE
Sbjct: 246 ----TGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKGL----PGAREL 297
Query: 392 LNAQNRL-TFEFLYNLVDRLRE 412
A N+ + ++ + E
Sbjct: 298 RRALNKAEDGAEVRRALEAVFE 319
|
Length = 323 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 7e-73
Identities = 111/321 (34%), Positives = 157/321 (48%), Gaps = 28/321 (8%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEA-AYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
++APM ++LPFR L R YGA T M+ ++ EK R +E PL VQ
Sbjct: 1 LLAPMAGVTDLPFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPTPLAVQL 60
Query: 165 CANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
+DP +L AA+ V D +DIN+GCP + RG GA L+ + LV +V+ +
Sbjct: 61 GGSDPALLAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKA 120
Query: 224 LNVPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 281
+++PV+ KIR+ + ++ ++ A+ +EDAG L VHGRTR + ADW+AIK V
Sbjct: 121 VDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTR--AQNYEGPADWDAIKQV 178
Query: 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEI 341
K A+ IPV+ANG++ ED Q+CL TG +GV+ L NP LFA T +
Sbjct: 179 KQAVSIPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAEQHTVKT------- 231
Query: 342 SKDGNLDQADLLVEYL-KLCEKYP---------VPWRMIRSHVHKLLGEWFRIQPGVRED 391
G D L E + E R R H+ L + F +R +
Sbjct: 232 ---GEFDPRPPLAEEAEIVLEHLSYLEEFYGEDKGLRHARKHLAWYL-KGFPGAAELRRE 287
Query: 392 LNAQNRLTFEFLYNLVDRLRE 412
LN T E L NL LR
Sbjct: 288 LNDVFDPT-EALINLDAALRA 307
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-44
Identities = 95/326 (29%), Positives = 166/326 (50%), Gaps = 35/326 (10%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEK-----YRNEEFATCK 155
+ ++++APM ++ PFR L YGA M+ S I +S++ E+
Sbjct: 7 KSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAED----- 61
Query: 156 EDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCP-QRIARRGNYGAFLMDNLPLV 213
+ P+ VQ +DP+ + AA+ E D +DIN+GCP +I ++G G+ L+ + L+
Sbjct: 62 -ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLI 119
Query: 214 KSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 271
+V+ + +++PV+ KIR+ + ++ A++ EDAG + +HGRTR + G
Sbjct: 120 GKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ--GYSG 177
Query: 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331
A+W+ I VK A+RIPV+ NG++ ED + LE TGC+GV+ L NP LF +
Sbjct: 178 EANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFR--QI 235
Query: 332 AEWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHV-HKLLGEWFRIQPG 387
+++ + ++ D ++ +L+L Y R+ R H+ L G PG
Sbjct: 236 EQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKGF-----PG 290
Query: 388 V---REDLNAQNRLTFEFLYNLVDRL 410
R+ LN + +F+ + L+D
Sbjct: 291 NAALRQTLNHAS--SFQEVKQLLDDF 314
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 4e-27
Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 13/232 (5%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT-ESEKYRNEEFATCKEDRPL 160
R +LI APM ++ PFR LC GA + M+ S ES+K R D P
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHIDEPG 65
Query: 161 F--VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ LVKS++
Sbjct: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSIL 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRAD 274
++ ++VPV+ KIR P ++ ++ A++ ED G L +HGRTR +G+ A+
Sbjct: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE---AE 182
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+++I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
|
Length = 321 |
| >gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 5e-20
Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 39/248 (15%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLFV 162
+ VAPM+D ++ FR R YT M+ ++ +K +F+ E+ P+ +
Sbjct: 2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFS--PEESPVAL 59
Query: 163 QFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
Q +DP L A+ E D +++N+GCP + GN+GA LM N LV V+ +
Sbjct: 60 QLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQ 119
Query: 222 LNLNVPVSCKIRVFPNLQDT----IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
+N+PV+ K R+ + D+ + +++ GC VH R W +
Sbjct: 120 EAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKA-----------WLS 168
Query: 278 IKAVKNALRIPVL------------------ANGNVRHMEDVQKCLEETGCEGVLSAESL 319
+ K IP L NG +++ E +++ L +GV+
Sbjct: 169 GLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHV--DGVMVGREA 226
Query: 320 LENPALFA 327
ENP L A
Sbjct: 227 YENPYLLA 234
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318 |
| >gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 8e-20
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 11/174 (6%)
Query: 159 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV---- 213
+ +Q P+ L NAAR VE VD+N GCP + GA L+ + L+
Sbjct: 64 LVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123
Query: 214 KSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-KKF 271
K++ E A+ ++PV+ K+R+ + + + + A ++ AG + L VHGRT++ DG +
Sbjct: 124 KAMRE--AVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE--DGYRAE 179
Query: 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
+W AI ++ L IPV+ANG + + Q+C+ TGC+ V+ L P L
Sbjct: 180 HINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNL 233
|
Length = 312 |
| >gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 6e-12
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 22/177 (12%)
Query: 98 TKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSR--IFTESEK---YRNEEF 151
+KL + VAPM+D ++ R R A YT M+ + I + E+ + EE
Sbjct: 6 SKLPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEE- 64
Query: 152 ATCKEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNL 210
P+ +Q +DP L AA+ E + D +++N+GCP + G +GA LM
Sbjct: 65 ------HPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEP 118
Query: 211 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE------DAGCSLLAVHGR 261
LV V+ + +++PV+ K R+ + QD+ Y + + +AGC VH R
Sbjct: 119 ELVADCVKAMKDAVSIPVTVKHRIGIDDQDS--YEFLCDFVDTVAEAGCDTFIVHAR 173
|
Length = 333 |
| >gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 225 NVPVSCKI---RVFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRAD 274
+ PV ++ P L++ I+ AK LE+AG L V G + +
Sbjct: 208 DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEG 267
Query: 275 WNA--IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
+ + +K A++IPV+A G +R E ++ L E + V +LL +P L
Sbjct: 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDL 320
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. Length = 327 |
| >gnl|CDD|239237 cd02911, arch_FMN, Archeal FMN-binding domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225
++ E LLNAA V ++IN C Q G L+ + + ++ L
Sbjct: 81 SSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALK-ETG 139
Query: 226 VPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 284
VPVS KIR + D + A+++E AG +H D + AD I+ +
Sbjct: 140 VPVSVKIRA--GVDVDDEELARLIEKAGA--DIIHVDAMDPGNH----ADLKKIRDIST- 190
Query: 285 LRIPVLANGNVRHMEDVQKCLE 306
+ ++ N +V +E ++
Sbjct: 191 -ELFIIGNNSVTTIESAKEMFS 211
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. Length = 233 |
| >gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 32/182 (17%)
Query: 144 EKYRNEEFATCKE-DRPLFVQFCANDPEILLNAARRVE---PYCDYVDINLGCPQRIARR 199
E + E +E PL + E A ++E PY D ++NL CP
Sbjct: 76 EAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG-- 133
Query: 200 GNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL--- 256
G + + L +V+ + +VPV K+ PN+ D + AK E+AG L
Sbjct: 134 --GGIAIGQDPELSADVVKAVKDKTDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLI 189
Query: 257 -AVHGRTRDEKDGKKFRADWN------AIKAVKNALR----------IPVLANGNVRHME 299
+ G D K GK A+ AIK + ALR IP++ G + E
Sbjct: 190 NTLRGMKIDIKTGKPILANKTGGLSGPAIKPI--ALRMVYDVYKMVDIPIIGVGGITSFE 247
Query: 300 DV 301
D
Sbjct: 248 DA 249
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. Length = 300 |
| >gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 6e-06
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 240 DTIKYAKMLEDAGCS---LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR 296
D +++AK LE+ G L + +DG D + + A+ IPV+A+G V
Sbjct: 149 DAVEWAKKLEELGAGEILLTDID------RDGTLSGPDLELTRELAEAVNIPVIASGGVG 202
Query: 297 HMEDVQKCLEETGCEGVLSAESLLEN 322
+ED+++ L G +GV++ +L E
Sbjct: 203 SLEDLKE-LFSEGVDGVIAGSALHEG 227
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230 |
| >gnl|CDD|240083 cd04732, HisA, HisA | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 301
+ AK E+ G + T +DG ++ K + A IPV+A+G V ++D+
Sbjct: 149 EELAKRFEELGVKAIIY---TDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDI 205
Query: 302 QKCLEETGCEGVLSAESLLEN 322
+ L+E G GV+ ++L E
Sbjct: 206 KA-LKELGVAGVIVGKALYEG 225
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. Length = 234 |
| >gnl|CDD|223184 COG0106, HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 245 AKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303
AK LE+ G + + D +DG + + +K + A+ IPV+A+G V ++D++
Sbjct: 153 AKRLEEVGLAHILYT----DISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKA 208
Query: 304 CLEETGCEGVLSAESLLEN 322
E +G EGV+ +L E
Sbjct: 209 LKELSGVEGVIVGRALYEG 227
|
Length = 241 |
| >gnl|CDD|223185 COG0107, HisF, Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 240 DTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 297
D +++AK +E+ AG LL T ++DG K D +AV+ A+ IPV+A+G
Sbjct: 156 DAVEWAKEVEELGAGEILL-----TSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGK 210
Query: 298 MEDVQKCLEETGCEGVLSA 316
E + E + L+A
Sbjct: 211 PEHFVEAFTEGKADAALAA 229
|
Length = 256 |
| >gnl|CDD|240091 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 52/208 (25%)
Query: 144 EKYRNE-EFATCKEDRPLFVQFCANDPEILLNAARRVEPYC-DYVDINLGCPQRIARRGN 201
E + E + P+ + E + A ++ D +++N+ CP
Sbjct: 75 EAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNV----KG 130
Query: 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 261
G + V +V+ + +VPV K+ PN+ D ++ A+ E+AG
Sbjct: 131 GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT--PNVTDIVEIARAAEEAG--------- 179
Query: 262 TRDEKDGKKFRAD-WNAIKAVKNALRI------PVLANGN------------VRHMEDVQ 302
AD I +K + I P+L N +R + V
Sbjct: 180 -----------ADGLTLINTLK-GMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY 227
Query: 303 KCLEET--GCEGVLSAESLLENPALFAG 328
K +E G G+ S E LE L AG
Sbjct: 228 KAVEIPIIGVGGIASGEDALE--FLMAG 253
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. Length = 296 |
| >gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 240 DTIKYAKMLEDAGCS--LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 297
D +++AK +E+ G LL T ++DG K D I+AV +A+ IPV+A+G
Sbjct: 150 DAVEWAKEVEELGAGEILL-----TSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGK 204
Query: 298 MEDVQKCLEETGCEGVLSA 316
E + EE G + L+A
Sbjct: 205 PEHFVEAFEEGGADAALAA 223
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 243 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.002
Identities = 47/225 (20%), Positives = 74/225 (32%), Gaps = 43/225 (19%)
Query: 105 LIVAPMVDN-SELPFRML--CRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKE---D 157
+I+A + S P + GA+A ++ +R E + ++E D
Sbjct: 1 VILALLAGGPSGDPVELAKAAAEAGADAI---IVGTRSSDPEEAETDDKEVLKEVAAETD 57
Query: 158 RPLFVQFCANDP-EILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 215
PL VQ ND + AA D V+I+ ++L L++
Sbjct: 58 LPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAR----------EDLELIRE 107
Query: 216 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------K 269
L E +V V K+ L A V G
Sbjct: 108 LREA---VPDVKVVVKLSPTG----------ELAAAAAEEAGVDEVGLGNGGGGGGGRDA 154
Query: 270 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314
AD I A K ++PV+A G + ED + G +GV+
Sbjct: 155 VPIADLLLILA-KRGSKVPVIAGGGINDPEDAAE-ALALGADGVI 197
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|129819 TIGR00736, nifR3_rel_arch, TIM-barrel protein, putative | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 3/118 (2%)
Query: 142 ESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGN 201
E Y E+ + + V D E + + + D ++IN C Q
Sbjct: 52 EFNSYIIEQIKKAESRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIG 111
Query: 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259
G L+ N L+K + K+ LN P+ KIR D + A L D G +H
Sbjct: 112 IGQELLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDDGF--DGIH 166
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins [Unknown function, General]. Length = 231 |
| >gnl|CDD|239242 cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.004
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 238 LQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 292
L+D+++ AK L++ G L+ V + G ++ + A + ++ IPV+A
Sbjct: 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPV-GPGYQVPF-A-ERIRQEAGIPVIAV 296
Query: 293 GNVRHMEDVQKCLEETGCEGVLSAESLLENP 323
G + E + LE + V LL NP
Sbjct: 297 GLITDPEQAEAILESGRADLVALGRELLRNP 327
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. Length = 336 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 436 | |||
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 100.0 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 100.0 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 100.0 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 100.0 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 100.0 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 100.0 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 100.0 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 100.0 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 100.0 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 100.0 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 100.0 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 100.0 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 100.0 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 100.0 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.98 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.97 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.97 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 99.96 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.96 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.96 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.96 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 99.95 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.95 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.95 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.95 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.95 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 99.94 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 99.94 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.94 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 99.94 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.94 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 99.93 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 99.93 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.93 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 99.93 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.92 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.92 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 99.9 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 99.89 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.88 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 99.88 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.87 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.87 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.86 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.86 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 99.83 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.81 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.78 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.78 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.77 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.71 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.69 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.69 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.65 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.64 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.63 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.63 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.6 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.57 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.54 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.53 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.51 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.49 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.45 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.45 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.44 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 99.42 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.41 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.39 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.36 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.36 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.35 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.32 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.3 | |
| KOG0134 | 400 | consensus NADH:flavin oxidoreductase/12-oxophytodi | 99.23 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.21 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 99.2 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.17 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.14 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.11 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.1 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.09 | |
| PLN02535 | 364 | glycolate oxidase | 99.09 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 99.06 | |
| PLN02979 | 366 | glycolate oxidase | 99.01 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 99.01 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 99.0 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 98.99 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.99 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 98.98 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.98 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 98.95 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.95 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.95 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.94 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 98.94 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.93 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 98.92 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.92 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.9 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 98.88 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.88 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.88 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 98.87 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.85 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.85 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.84 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.8 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 98.79 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.78 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 98.77 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.76 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 98.74 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.71 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.7 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.68 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.68 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.66 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.66 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.66 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.65 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.62 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.62 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.6 | |
| PLN02591 | 250 | tryptophan synthase | 98.55 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.54 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.54 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.53 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.52 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.51 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 98.49 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 98.47 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.46 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.46 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 98.45 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.42 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.4 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.4 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.4 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.4 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 98.39 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.38 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.38 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 98.37 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.37 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.36 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.36 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.35 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.34 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.34 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.34 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 98.34 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.34 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 98.29 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.28 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.28 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 98.27 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 98.26 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.26 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.25 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 98.23 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.2 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.19 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.19 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 98.18 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 98.16 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 98.12 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 98.11 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 98.09 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.08 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.07 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.07 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 98.07 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.06 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 98.05 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.03 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 98.02 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 98.02 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.0 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.99 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.98 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.98 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.98 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.96 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 97.96 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.95 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 97.93 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 97.86 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.85 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 97.85 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.81 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.79 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 97.78 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.76 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 97.76 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 97.71 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.7 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.68 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.65 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 97.65 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 97.63 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 97.59 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.57 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.57 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.53 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.51 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.47 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.45 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.42 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.39 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.38 | |
| PRK08005 | 210 | epimerase; Validated | 97.35 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.29 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.29 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.28 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 97.27 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 97.25 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.25 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 97.24 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.24 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 97.22 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.14 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 97.13 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.12 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.12 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.06 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.04 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 97.01 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.92 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 96.9 | |
| PRK06852 | 304 | aldolase; Validated | 96.9 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 96.88 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 96.85 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 96.84 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.82 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.81 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 96.81 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.8 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 96.79 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 96.74 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.73 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 96.72 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 96.72 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 96.71 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.71 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 96.69 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 96.68 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 96.65 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 96.65 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.64 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 96.64 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.63 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 96.61 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 96.58 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 96.58 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 96.58 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 96.57 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 96.57 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.57 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 96.57 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.55 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 96.53 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 96.52 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 96.51 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 96.49 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 96.49 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 96.48 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 96.47 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 96.46 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.41 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 96.38 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 96.35 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 96.34 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 96.33 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 96.33 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 96.33 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.32 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 96.32 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 96.32 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 96.29 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 96.27 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 96.26 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.25 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 96.24 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 96.24 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.2 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.19 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 96.18 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 96.18 | |
| PLN02535 | 364 | glycolate oxidase | 96.17 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 96.16 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 96.14 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 96.12 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 96.12 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 96.11 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 96.1 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 96.1 | |
| PRK14057 | 254 | epimerase; Provisional | 96.08 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 96.05 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 96.03 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 96.02 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 96.02 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.01 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 95.98 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 95.97 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 95.95 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 95.94 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 95.9 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 95.87 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.83 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.83 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 95.82 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 95.82 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 95.82 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 95.82 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 95.81 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 95.8 | |
| PLN02979 | 366 | glycolate oxidase | 95.79 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 95.79 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 95.79 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 95.77 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 95.77 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 95.76 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.75 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 95.75 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 95.73 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 95.73 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.68 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 95.62 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 95.6 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 95.57 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 95.56 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 95.49 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.48 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.42 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 95.38 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.35 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 95.35 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 95.32 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 95.31 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.27 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 95.26 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.26 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 95.25 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 95.25 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 95.22 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 95.21 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.21 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.19 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 95.18 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 95.17 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 95.15 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 95.13 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 95.11 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 95.11 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 95.1 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 94.99 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 94.97 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 94.97 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 94.93 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 94.88 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.88 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 94.88 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 94.85 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 94.83 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.83 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 94.78 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 94.77 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 94.71 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.7 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 94.69 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 94.64 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 94.62 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 94.62 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 94.56 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 94.55 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 94.5 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 94.5 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 94.42 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.41 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.38 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 94.35 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 94.34 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 94.33 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 94.26 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 94.24 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 94.16 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 94.08 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 94.08 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 94.06 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 94.05 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 94.02 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 94.01 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 93.97 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 93.96 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 93.96 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.95 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 93.76 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 93.75 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 93.75 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 93.74 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.74 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 93.71 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 93.7 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 93.69 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 93.68 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 93.66 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 93.66 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 93.58 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.57 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 93.56 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 93.52 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 93.48 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 93.45 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 93.23 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 93.14 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 93.09 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 93.07 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 93.06 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 93.06 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 93.01 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 92.96 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 92.96 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 92.95 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 92.9 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 92.88 | |
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 92.86 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 92.74 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 92.73 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 92.65 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.61 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 92.48 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 92.41 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 92.22 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 92.21 | |
| PF00793 | 270 | DAHP_synth_1: DAHP synthetase I family; InterPro: | 92.19 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 92.15 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 92.15 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 92.1 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 91.97 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 91.93 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 91.84 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 91.76 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 91.71 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 91.69 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 91.66 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 91.65 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 91.64 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 91.59 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 91.5 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 91.46 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 91.45 | |
| COG0413 | 268 | PanB Ketopantoate hydroxymethyltransferase [Coenzy | 91.43 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 91.4 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 91.36 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 91.35 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 91.35 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 91.26 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 91.24 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 91.16 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 91.11 | |
| COG1891 | 235 | Uncharacterized protein conserved in archaea [Func | 91.08 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 91.06 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 91.05 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 90.9 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 90.73 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 90.64 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 90.56 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 90.55 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 90.45 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.45 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 90.31 | |
| cd08209 | 391 | RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent | 90.21 | |
| PRK15452 | 443 | putative protease; Provisional | 90.19 | |
| cd08213 | 412 | RuBisCO_large_III Ribulose bisphosphate carboxylas | 90.11 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 90.04 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 89.92 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 89.65 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 89.52 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 89.51 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 89.46 | |
| PRK09549 | 407 | mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate eno | 89.35 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 89.32 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 89.32 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 89.0 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 88.98 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 88.97 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 88.91 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 88.78 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 88.77 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 88.75 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 88.72 | |
| cd00311 | 242 | TIM Triosephosphate isomerase (TIM) is a glycolyti | 88.71 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 88.67 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 88.64 | |
| PRK02412 | 253 | aroD 3-dehydroquinate dehydratase; Provisional | 88.6 | |
| PRK14567 | 253 | triosephosphate isomerase; Provisional | 88.57 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 88.43 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 88.41 | |
| cd00502 | 225 | DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat | 88.15 |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-68 Score=524.78 Aligned_cols=311 Identities=52% Similarity=0.814 Sum_probs=283.6
Q ss_pred HHHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHH
Q 013813 94 WAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILL 173 (436)
Q Consensus 94 ~~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~ 173 (436)
+-||++.+.+.-++|||+++|+++||+|||+||++++|||||.++.|.++++++...|++++.|+|||||++|+||+.+.
T Consensus 10 ~~f~~~~~~~~ri~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll 89 (358)
T KOG2335|consen 10 AIFWSKQGRPKRIVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLL 89 (358)
T ss_pred HhhhhhcCCcccccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHH
Confidence 56999999887799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
+||++++++||+||||||||++.+++|+||++||.+|+++.++|++++..++.||+||||++.+.++++++|++++++|+
T Consensus 90 ~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~ 169 (358)
T KOG2335|consen 90 KAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGV 169 (358)
T ss_pred HHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh--hh
Q 013813 254 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG--FR 330 (436)
Q Consensus 254 d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~--i~ 330 (436)
+.|+|||||+.++....+++||+.|+.|++.+. +|||+||||.+.+|+.++++.||+||||+|||+|.|||+|.. ..
T Consensus 170 ~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~~~~ 249 (358)
T KOG2335|consen 170 SLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLTAGYG 249 (358)
T ss_pred cEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhccCCCC
Confidence 999999999998876678999999999999987 999999999999999999999999999999999999999954 22
Q ss_pred hhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhhhcCCHHHHHHHHhcc-hhcHHHHHH-H
Q 013813 331 TAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVP--WRMIRSHVHKLLGEWFRIQPGVREDLNAQN-RLTFEFLYN-L 406 (436)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~--~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~-~~~~~~~~~-~ 406 (436)
. ...+++.+|++++.+++.. +..+|.|+++|++.++..++.+|..++..+ ..++.++.. +
T Consensus 250 ~----------------~~~~~~~~~l~~~~e~~g~~~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~ 313 (358)
T KOG2335|consen 250 P----------------TPWGCVEEYLDIAREFGGLSSFSLIRHHLFKMLRPLLSIHQDLRRDLAALNSCESVIDFLEEL 313 (358)
T ss_pred C----------------CHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhHHHHHHHH
Confidence 1 1246899999999988744 899999999999999999999999998776 234555554 5
Q ss_pred HHHHHHhcCCCCCC
Q 013813 407 VDRLRELGVRIPLY 420 (436)
Q Consensus 407 l~~~~~~~~~~~~~ 420 (436)
+..+++.+.+.|-.
T Consensus 314 ~~~v~~~~~d~~~~ 327 (358)
T KOG2335|consen 314 VLMVRKRVEDGFGR 327 (358)
T ss_pred HHHHHhhhcccccc
Confidence 55666777665544
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=505.70 Aligned_cols=305 Identities=33% Similarity=0.507 Sum_probs=272.7
Q ss_pred HhCCCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHH
Q 013813 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAAR 177 (436)
Q Consensus 99 ~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~ 177 (436)
...+++++||||+|+||.+||++|+++|+ +++|||||+++.+.+..+.....+...+.+.|++|||+|++|+.+++||+
T Consensus 7 ~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~eaA~ 86 (323)
T COG0042 7 IELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEAAK 86 (323)
T ss_pred ccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHHHHH
Confidence 34578999999999999999999999999 99999999999988776655555555577999999999999999999999
Q ss_pred HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCChhh--HHHHHHHHHHcCc
Q 013813 178 RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQD--TIKYAKMLEDAGC 253 (436)
Q Consensus 178 ~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d--~~~~ak~le~aG~ 253 (436)
++++ |+|+||||||||++++.++++||+||++|+++.+||++++++++ +|||||||+|++..+ ..++++.++++|+
T Consensus 87 ~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~ 166 (323)
T COG0042 87 IAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGA 166 (323)
T ss_pred HHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCC
Confidence 8866 78999999999999999999999999999999999999999995 999999999998776 7889999999999
Q ss_pred cEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 254 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 254 d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
+.|+|||||+.+. +.+++||+.|+++++.++ +|||+||||.|++|++++|+.+||||||||||++.|||+|.++
T Consensus 167 ~~ltVHgRtr~~~--y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i--- 241 (323)
T COG0042 167 DALTVHGRTRAQG--YLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI--- 241 (323)
T ss_pred CEEEEecccHHhc--CCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH---
Confidence 9999999999975 445799999999999998 9999999999999999999999999999999999999999988
Q ss_pred hhccCCcccCCCCHHHHHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHHH
Q 013813 333 EWIVGSEEISKDGNLDQADLLVEYLKLCEKYP--VPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRL 410 (436)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~--~~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~~ 410 (436)
++..+++... ++..+..+++.+|++...++. ..+..+|+|+.||+.. +.+...+|+.+++.. ++.++..+++.+
T Consensus 242 ~~~~~g~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~~~~-~~~a~~~r~~~~~~~--~~~~~~~~l~~~ 317 (323)
T COG0042 242 DYLETGELLP-PTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKG-LPGARELRRALNKAE--DGAEVRRALEAV 317 (323)
T ss_pred HHhhcCCCCC-CCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CccHHHHHHHHhccC--cHHHHHHHHHHH
Confidence 5555666543 778899999999999766554 5688999999998886 578889999988886 788888888776
Q ss_pred HH
Q 013813 411 RE 412 (436)
Q Consensus 411 ~~ 412 (436)
..
T Consensus 318 ~~ 319 (323)
T COG0042 318 FE 319 (323)
T ss_pred Hh
Confidence 54
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=480.53 Aligned_cols=294 Identities=23% Similarity=0.328 Sum_probs=254.2
Q ss_pred cEEEccCCCCCcHHHHHHHHHhC-CCeEEeCcccchhhccChhhh---hhhhh---ccCCCCCEEEEecCCCHHHHHHHH
Q 013813 104 KLIVAPMVDNSELPFRMLCRRYG-AEAAYTPMLHSRIFTESEKYR---NEEFA---TCKEDRPLFVQFCANDPEILLNAA 176 (436)
Q Consensus 104 ~i~lAPM~gvtd~~fR~l~~~~G-a~l~~Temisa~~l~~~~~~~---~~~~~---~~~~e~plivQL~g~d~e~~~~AA 176 (436)
+++||||+|+||.+||++|+++| ++++|||||+++.+..+.+.. ...+. ..+.++|+++||+|++|+.|++||
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 68999999999999999999999 799999999987665543322 11222 456789999999999999999999
Q ss_pred HHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCCh-hhHHHHHHHHHHcC
Q 013813 177 RRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL-QDTIKYAKMLEDAG 252 (436)
Q Consensus 177 ~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~-~d~~~~ak~le~aG 252 (436)
+.+++ |+|+||||||||++.+.+.++|++|+++|+++.+|++++++.+ ++||+||+|+|++. ++..++++.++++|
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~G 161 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAG 161 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcC
Confidence 87764 8999999999999988888899999999999999999999988 49999999999753 46789999999999
Q ss_pred ccEEEeccCcccccCCCCCc-cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 253 CSLLAVHGRTRDEKDGKKFR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 253 ~d~I~VHgRt~~~~~~~~g~-ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
++.|+||+||..+ +++++ ++|+.++++++.+++|||+||||.|++|++++++.+|||+||||||+++|||||++++.
T Consensus 162 vd~i~Vh~Rt~~~--~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~ 239 (312)
T PRK10550 162 ATELVVHGRTKED--GYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKY 239 (312)
T ss_pred CCEEEECCCCCcc--CCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhc
Confidence 9999999999875 45566 49999999999999999999999999999999999999999999999999999998864
Q ss_pred hhhccCCcccCCCCHHHHHHHHHHHHHHHHhCC-C--hhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHH
Q 013813 332 AEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP-V--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVD 408 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~--~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~ 408 (436)
++ ..++..++++++.+|+++..++. . .+..||+|+.||+.. +++..++|+.+++++ +.+++.++++
T Consensus 240 ------g~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~i~~~~--~~~e~~~~~~ 308 (312)
T PRK10550 240 ------NE--PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKE-YDEATELFQEIRALN--NSPDIARAIQ 308 (312)
T ss_pred ------CC--CCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhc-CCcHHHHHHHHHcCC--CHHHHHHHHH
Confidence 22 23567788889999998755443 2 266799999998885 688889999999997 8899998887
Q ss_pred HH
Q 013813 409 RL 410 (436)
Q Consensus 409 ~~ 410 (436)
++
T Consensus 309 ~~ 310 (312)
T PRK10550 309 AI 310 (312)
T ss_pred hh
Confidence 64
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-61 Score=482.57 Aligned_cols=303 Identities=28% Similarity=0.400 Sum_probs=263.9
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhcc-ChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTE-SEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~-~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
+++++||||+|+||++||.+|+++|++++||||++++.+.. +.+.... +...+++.|+++||+|++|+++++||+.++
T Consensus 9 ~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~-~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~ 87 (321)
T PRK10415 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLR-MVHIDEPGIRTVQIAGSDPKEMADAARINV 87 (321)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHH-hccCccCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999986543 3333322 334466789999999999999999998765
Q ss_pred -CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh--hHHHHHHHHHHcCccEEE
Q 013813 181 -PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ--DTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 181 -~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~--d~~~~ak~le~aG~d~I~ 257 (436)
.|+|+||||||||++.+.+.++|++|+++|+++.+|++++++.+++||+||+|.|++.+ +..++++.++++|+++|+
T Consensus 88 ~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~ 167 (321)
T PRK10415 88 ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALT 167 (321)
T ss_pred HCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEE
Confidence 58999999999999988888899999999999999999999999999999999998643 678999999999999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhhhccC
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 337 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~~~~~ 337 (436)
||+|++.+. +.|.++|+.++++++.+++|||+||||.|++|++++++.+|||+||||||++.|||+|.+++. ++..
T Consensus 168 vh~rt~~~~--~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~--~~~~ 243 (321)
T PRK10415 168 IHGRTRACL--FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH--YLDT 243 (321)
T ss_pred EecCccccc--cCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHH--HHhC
Confidence 999998764 455789999999999999999999999999999999998999999999999999999999863 4444
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHh-CCC--hhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHHHHH
Q 013813 338 SEEISKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 412 (436)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~yl~~~~~-~~~--~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~~~~ 412 (436)
|+....++..++.+++.+|++.+.+ |+. .+..+|||+.||+.+ +++..++|+.+++++ +++++.++++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~ 318 (321)
T PRK10415 244 GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIE--DASEQLEALEAYFE 318 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhc-CCchHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 5554456778889999999986544 443 367899999998885 688899999999998 99999999998763
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=490.04 Aligned_cols=298 Identities=36% Similarity=0.570 Sum_probs=228.7
Q ss_pred EEccCCCCCcHHHHHHHHHhCCC-eEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CC
Q 013813 106 IVAPMVDNSELPFRMLCRRYGAE-AAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP-YC 183 (436)
Q Consensus 106 ~lAPM~gvtd~~fR~l~~~~Ga~-l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~ 183 (436)
+||||+|+||.+||.+|+++|++ ++|||||+++.+....+.....+...+.++|+++||+|+||+.+++||+++++ |+
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 58999999999999999999997 99999999998887766666667888888999999999999999999999988 89
Q ss_pred cEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC--hhhHHHHHHHHHHcCccEEEeccC
Q 013813 184 DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 184 D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgR 261 (436)
|+||||||||++.+.++++|++||++|+++.+||+++++.+++||+||||+|++ .+++.++++.++++|+++|+||+|
T Consensus 81 ~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred cEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecC
Confidence 999999999999999999999999999999999999999999999999999987 678999999999999999999999
Q ss_pred cccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhhhccCCccc
Q 013813 262 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEI 341 (436)
Q Consensus 262 t~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~~~~~~~~~ 341 (436)
|..+. +.+++||+.++++++.+++|||+||||+|++|+.++++.|||||||||||++.|||+|.+.....+ +...
T Consensus 161 t~~q~--~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~---~~~~ 235 (309)
T PF01207_consen 161 TRKQR--YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKE---GEPE 235 (309)
T ss_dssp -TTCC--CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHH---HTT-
T ss_pred chhhc--CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhcc---CCCC
Confidence 99875 445999999999999999999999999999999999999999999999999999999995322222 1222
Q ss_pred CCCCHHHHHHHHHHHHHHHHh-C--CChhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHH-HHH
Q 013813 342 SKDGNLDQADLLVEYLKLCEK-Y--PVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVD-RLR 411 (436)
Q Consensus 342 ~~~~~~~~~~~~~~yl~~~~~-~--~~~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~-~~~ 411 (436)
..++..++.+++.+|+++..+ + ...+..+|+|+.||+.. +.+...+|+.++++. +.+++.+.|+ ++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~-~~~~~~~r~~l~~~~--~~~e~~~~l~~~~~ 306 (309)
T PF01207_consen 236 PFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFKG-FPGARKFRRELNKCK--TLEEFLELLEEAFL 306 (309)
T ss_dssp -S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTTT-STTHHHHHHHHCCH---SHHHHHHHH-----
T ss_pred CCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcc-CCcHHHHHHHHHhhC--CHHHHhhhhccccc
Confidence 223356788899999986544 3 23477889998887775 667778999999987 8899988888 444
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=477.42 Aligned_cols=300 Identities=21% Similarity=0.336 Sum_probs=252.2
Q ss_pred CcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 103 PKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 103 ~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
++++||||+|+||++||.+|+++|+ +++||||++++.+..+.+. ..+..++.++|+++||+|++|+.+++||+.+++
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 78 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEK 78 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998 8999999999988765444 246777899999999999999999999998865
Q ss_pred -CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh----hhHHHHHHHHHHcCccEE
Q 013813 182 -YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL----QDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 182 -g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~----~d~~~~ak~le~aG~d~I 256 (436)
|+|+||||||||++++.+++||++|+++|+++.+|++++++++++||+||+|+|++. +++.++++.++++|++.|
T Consensus 79 ~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~i 158 (318)
T TIGR00742 79 RGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNF 158 (318)
T ss_pred CCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEE
Confidence 899999999999999999999999999999999999999999999999999998753 467889999999999999
Q ss_pred EeccCcc-cccCC-----CCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 257 AVHGRTR-DEKDG-----KKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 257 ~VHgRt~-~~~~~-----~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+|||||+ .+.+. ..++++|+.++++++.+ ++|||+||||.|++|+.+++. |||+||||||++.|||+|.++
T Consensus 159 tvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~ 236 (318)
T TIGR00742 159 IVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANV 236 (318)
T ss_pred EEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHH
Confidence 9999997 22211 12245999999999987 899999999999999999995 899999999999999999998
Q ss_pred hhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHH
Q 013813 330 RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDR 409 (436)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~ 409 (436)
+.. +.++ ....++..++.+.+++|++....+...+..+|||+.||+.+ +++..++|+.+++..... ....++||.
T Consensus 237 ~~~--l~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~g-~~~~~~~r~~~~~~~~~~-~~~~~~~~~ 311 (318)
T TIGR00742 237 DRE--IFNE-TDEILTRKEIVEQMLPYIEEYLSQGLSLNHITRHLLGLFQG-KPGAKQWRRYLSENAPKA-GAGIEVLET 311 (318)
T ss_pred HHH--hcCC-CCCCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHcc-CCCHHHHHHHHHhcccCC-CCcHHHHHH
Confidence 753 3333 22345667778888888875544455688999999998885 688889999998864221 134455555
Q ss_pred HH
Q 013813 410 LR 411 (436)
Q Consensus 410 ~~ 411 (436)
..
T Consensus 312 ~~ 313 (318)
T TIGR00742 312 AL 313 (318)
T ss_pred HH
Confidence 43
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-57 Score=453.55 Aligned_cols=304 Identities=29% Similarity=0.508 Sum_probs=264.9
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
++|+++|||+|+||.+||.+|+++|++++|||||+++.+....+.....+..++.++|+++||+|++++++++||+.+++
T Consensus 7 ~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~ 86 (319)
T TIGR00737 7 KSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEE 86 (319)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999998766554444556677889999999999999999999998865
Q ss_pred -CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh--hhHHHHHHHHHHcCccEEEe
Q 013813 182 -YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 182 -g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~--~d~~~~ak~le~aG~d~I~V 258 (436)
|+|+||||+|||+..+.+.++|+.++++|+++.+|++++++.+++||+||+|+|++. .+..++++.++++|+++|+|
T Consensus 87 ~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 87 LGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL 166 (319)
T ss_pred CCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE
Confidence 899999999999877777777888999999999999999999999999999998753 35689999999999999999
Q ss_pred ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhhhccCC
Q 013813 259 HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS 338 (436)
Q Consensus 259 HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~~~~~~ 338 (436)
|+|+..+ +++++++|+.++++++.+++||++||||.|++|+.++++.+|||+||+|||++.|||+|.+++. ++..+
T Consensus 167 h~r~~~~--~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~--~~~~~ 242 (319)
T TIGR00737 167 HGRTRAQ--GYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQ--YLTTG 242 (319)
T ss_pred Ecccccc--cCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHH--HHhCC
Confidence 9998764 4556789999999999999999999999999999999988899999999999999999999863 34334
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHh-CCC--hhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHHHHH
Q 013813 339 EEISKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 412 (436)
Q Consensus 339 ~~~~~~~~~~~~~~~~~yl~~~~~-~~~--~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~~~~ 412 (436)
.....++..++++++.+|++++.+ |+. .+..+|+|+.+|+.. +++...+|+.+++++ +++++.++++++.+
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 243 KYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKG-FPGNAALRQTLNHAS--SFQEVKQLLDDFFE 316 (319)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhc-CCcHHHHHHHHHcCC--CHHHHHHHHHHHHh
Confidence 433345677888999999987544 543 378899999998864 688899999999998 89999999988754
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-57 Score=456.77 Aligned_cols=290 Identities=22% Similarity=0.354 Sum_probs=248.3
Q ss_pred HhCCCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHH
Q 013813 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAAR 177 (436)
Q Consensus 99 ~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~ 177 (436)
+.++++++||||+|+||++||.+|+++|+ +++||||++++.+..+. ....+..++.++|+++||+|++|+.+++||+
T Consensus 7 ~~~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~ 84 (333)
T PRK11815 7 KLPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAK 84 (333)
T ss_pred cCCCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHH
Confidence 35678999999999999999999999997 89999999999887654 2334566788999999999999999999999
Q ss_pred HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC----hhhHHHHHHHHHHcC
Q 013813 178 RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN----LQDTIKYAKMLEDAG 252 (436)
Q Consensus 178 ~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~----~~d~~~~ak~le~aG 252 (436)
++++ |+|+||||||||++++++++||++|+++|+++.+|++++++++++||+||+|++++ .++..++++.++++|
T Consensus 85 ~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG 164 (333)
T PRK11815 85 LAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAG 164 (333)
T ss_pred HHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhC
Confidence 8865 89999999999999999999999999999999999999999999999999999864 246789999999999
Q ss_pred ccEEEeccCccc-ccCC-----CCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 253 CSLLAVHGRTRD-EKDG-----KKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 253 ~d~I~VHgRt~~-~~~~-----~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+++|+||+|+.. +.+. ...+++|+.++++++.+ ++|||+||||.|++|+.++++ +||+||||||++.|||+
T Consensus 165 ~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~ 242 (333)
T PRK11815 165 CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYL 242 (333)
T ss_pred CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHH
Confidence 999999999862 2111 11357999999999985 899999999999999999997 69999999999999999
Q ss_pred chhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhcCCHHHHHHHHhcc
Q 013813 326 FAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN 396 (436)
Q Consensus 326 f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~ 396 (436)
|.+++...+ ++....++..++++.+.+|++....++..+..+|||+.||+++ +++..++|+.+++..
T Consensus 243 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~~~~~~ 309 (333)
T PRK11815 243 LAEVDRELF---GEPAPPLSRSEVLEAMLPYIERHLAQGGRLNHITRHMLGLFQG-LPGARAWRRYLSENA 309 (333)
T ss_pred HHHHHHHhc---CCCCCCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC-CCCHHHHHHHHHhhc
Confidence 999875433 3322235667777888888875544565688999999998885 688899999998774
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=372.27 Aligned_cols=226 Identities=42% Similarity=0.727 Sum_probs=208.0
Q ss_pred cEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-C
Q 013813 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP-Y 182 (436)
Q Consensus 104 ~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g 182 (436)
++++|||+++||++||++|+++|++++||||++++.+....+.....+..++.+.|+++||+|+++++|+++|+.+++ |
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG 80 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELG 80 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999998876655545556677889999999999999999999988866 9
Q ss_pred CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh-hHHHHHHHHHHcCccEEEeccC
Q 013813 183 CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 183 ~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~-d~~~~ak~le~aG~d~I~VHgR 261 (436)
+|+||||+|||+.++++++||+.++++++++.++++++++.+++||+||+|.+++.+ ++.++++.+++.|+++|+||+|
T Consensus 81 ~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 81 ADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred CCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCC
Confidence 999999999999999999999999999999999999999999999999999998765 8899999999999999999999
Q ss_pred cccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 262 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 262 t~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
+..+. +.++.+|+.++++++.+++||++||||.+++|+.++++.+|||+||+||+++.||++|++++.
T Consensus 161 ~~~~~--~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~ 228 (231)
T cd02801 161 TREQR--YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKE 228 (231)
T ss_pred CHHHc--CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhh
Confidence 87652 334679999999999999999999999999999999998899999999999999999998764
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=390.73 Aligned_cols=308 Identities=21% Similarity=0.383 Sum_probs=255.8
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
+.+++|||+..|+++|||+||+.+|||++|.||..+-.|..........++.+..+.-+.|||+|+.|+.+.+||+++.+
T Consensus 264 r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq~i~e 343 (614)
T KOG2333|consen 264 RDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQVIAE 343 (614)
T ss_pred ccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHHHHHHHHh
Confidence 46899999999999999999999999999999998877765544444556777788889999999999999999998855
Q ss_pred --CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCCh--hhHHHHHHHHH-HcCccE
Q 013813 182 --YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNL--QDTIKYAKMLE-DAGCSL 255 (436)
Q Consensus 182 --g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~--~d~~~~ak~le-~aG~d~ 255 (436)
-+|+||||||||...+.+.|.|++||++|..+.++|+++...++ +|++||||.|... .-+.+++..+. +-|+++
T Consensus 344 ~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~sa 423 (614)
T KOG2333|consen 344 TCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASA 423 (614)
T ss_pred hcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcce
Confidence 47999999999999888878899999999999999999987774 6999999998543 23456666665 899999
Q ss_pred EEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcC-cceeeeehHHhhCCccchhhhhh
Q 013813 256 LAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETG-CEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 256 I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tG-aDgVmIGRgal~nP~lf~~i~~~ 332 (436)
||+|||.++|+|.. .+||++|.++.+.+ .+|+|+||+|.|++|..+.+..++ +|+||||||+|-.||||.+|+..
T Consensus 424 vTlHGRSRqQRYTK--~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeq 501 (614)
T KOG2333|consen 424 VTLHGRSRQQRYTK--SANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQ 501 (614)
T ss_pred EEecCchhhhhhhc--ccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhh
Confidence 99999999987665 89999999999876 389999999999999888887765 99999999999999999999875
Q ss_pred hhccCCcccCCCCHHHHHHHHHHHHHHHHhC-CCh---hHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHH
Q 013813 333 EWIVGSEEISKDGNLDQADLLVEYLKLCEKY-PVP---WRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVD 408 (436)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~-~~~---~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~ 408 (436)
.+.. .+..+|+++++.|.+|..+| |.. +...|+++..++.++.+..| ..+++
T Consensus 502 q~wD-------~sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~RYiP-----------------v~l~e 557 (614)
T KOG2333|consen 502 QHWD-------ISSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHRYIP-----------------VGLLE 557 (614)
T ss_pred hcCC-------ccchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHHHHHhhch-----------------HHHhh
Confidence 4322 45678999999999987554 422 56778887665554333222 23455
Q ss_pred HH-HHhcCCCCCCCCCcchhhhhhhccC
Q 013813 409 RL-RELGVRIPLYKKDADDAEILADDLA 435 (436)
Q Consensus 409 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (436)
.+ .+++.|+|+|.+++++|||++|.-|
T Consensus 558 ~lpqriN~RPp~y~gRdelETLm~S~ka 585 (614)
T KOG2333|consen 558 VLPQRINDRPPLYTGRDELETLMSSQKA 585 (614)
T ss_pred cCchhhccCCccccchhHHHHHHhcccc
Confidence 55 4889999999999999999998654
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=332.80 Aligned_cols=211 Identities=21% Similarity=0.246 Sum_probs=178.3
Q ss_pred cEEEccCCCCCcHHHHH-HHHHhCCCeE--------------------EeCcccchhhccChhhhhhhhhccCCCCCEEE
Q 013813 104 KLIVAPMVDNSELPFRM-LCRRYGAEAA--------------------YTPMLHSRIFTESEKYRNEEFATCKEDRPLFV 162 (436)
Q Consensus 104 ~i~lAPM~gvtd~~fR~-l~~~~Ga~l~--------------------~Temisa~~l~~~~~~~~~~~~~~~~e~pliv 162 (436)
|++||||+|+||.+||. +|..+|+..+ ++||+++..+....+... .++ ..+.|+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~-~~~--~~~~p~~v 77 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIK-ALK--DSNVLVGV 77 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHH-Hhh--ccCCeEEE
Confidence 68999999999999999 7777877554 566665553221111111 122 34679999
Q ss_pred EecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHH
Q 013813 163 QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 163 QL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~ 242 (436)
||+|++++.+.++|+.++.++|+||||||||+..+.+.++|++|+++|+++.++++++++ .++||+||+|++++ .+..
T Consensus 78 qi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~-~~~~ 155 (233)
T cd02911 78 NVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD-VDDE 155 (233)
T ss_pred EecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-cCHH
Confidence 999999999999999998888999999999999888888999999999999999999997 59999999999988 8889
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++++.++++|+|.|+++.+.. + ..+||+.|++++ +++|||+||||.|++|+.++++ +|||+|||||+ .|
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~----g--~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~--~~ 224 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDP----G--NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVARA--SL 224 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCC----C--CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC--CC
Confidence 999999999999876654422 1 268999999987 7899999999999999999998 59999999999 99
Q ss_pred Cccchhhh
Q 013813 323 PALFAGFR 330 (436)
Q Consensus 323 P~lf~~i~ 330 (436)
||+|++++
T Consensus 225 p~~~~~~~ 232 (233)
T cd02911 225 PENIEWLV 232 (233)
T ss_pred chHHHHhh
Confidence 99998764
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=283.82 Aligned_cols=203 Identities=22% Similarity=0.252 Sum_probs=167.7
Q ss_pred CCCCCcHHHHHHHHHhC--CCeEEeCcccch--------h--------hccCh----hhhhhhhhccCCCCCEEEEecCC
Q 013813 110 MVDNSELPFRMLCRRYG--AEAAYTPMLHSR--------I--------FTESE----KYRNEEFATCKEDRPLFVQFCAN 167 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~G--a~l~~Temisa~--------~--------l~~~~----~~~~~~~~~~~~e~plivQL~g~ 167 (436)
|+|.||..| |+++. +++++-.-++.. . |..+. .....++....+..|+++|+.++
T Consensus 1 mag~~d~~~---~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~~~~vivnv~~~ 77 (231)
T TIGR00736 1 MAGITDAEF---CRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAESRALVSVNVRFV 77 (231)
T ss_pred CCCcchHHH---HHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhhcCCEEEEEecC
Confidence 889999977 55553 566665544321 1 11111 11112223334567999999999
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHH
Q 013813 168 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 247 (436)
Q Consensus 168 d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~ 247 (436)
+++++.++++.+++++|+||||||||++.+.+.++|++|+++|+++.++++++++ .++||+||+|++++..+..++++.
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~ 156 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALN 156 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999994 589999999998876788999999
Q ss_pred HHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 248 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 248 le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++++|+|+|+||.++.. .+.++|+.|+++++.++ +|||+||||+|++|+.++++ +|||+||||||++.+
T Consensus 157 l~~aGad~i~Vd~~~~g-----~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYPG-----KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFVSVARAILKG 226 (231)
T ss_pred HHHcCCCEEEEeeCCCC-----CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeEEEcHhhccC
Confidence 99999999999976532 12389999999999985 99999999999999999998 699999999999976
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=293.17 Aligned_cols=261 Identities=32% Similarity=0.567 Sum_probs=219.9
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhh---------------hhhhccC-CCCCEEEEec
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRN---------------EEFATCK-EDRPLFVQFC 165 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~---------------~~~~~~~-~e~plivQL~ 165 (436)
+++++||||+.++++|.|.|+-+||++++|||-|.+..|..+....+ ..|.+++ +...+++|++
T Consensus 10 ~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rlilQ~g 89 (477)
T KOG2334|consen 10 RNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRLILQIG 89 (477)
T ss_pred cCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeEEEEec
Confidence 67999999999999999999999999999999988765433211111 1233443 3457999999
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 245 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~a 245 (436)
.++++-..++|+++.....+||+|||||..+...+|+|++|+.+|+.+..|+..+.+...+||++|||+.++.++++++.
T Consensus 90 T~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv 169 (477)
T KOG2334|consen 90 TASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLV 169 (477)
T ss_pred CCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHH
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCC---HHHHHHHHHhcCcceeeeehHHhh
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRH---MEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s---~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+.+.+.|+..|+||+||.+++... ++.-++++.+.+.+. +|||.|||+.+ ..|+....+.+|+++|||+|++..
T Consensus 170 ~ri~~tgi~ai~vh~rt~d~r~~~--~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~ 247 (477)
T KOG2334|consen 170 KRICATGIAAITVHCRTRDERNQE--PATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES 247 (477)
T ss_pred HHHHhcCCceEEEEeeccccCCCC--CCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence 999999999999999999976544 677888999999886 99999999999 788888888899999999999999
Q ss_pred CCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q 013813 322 NPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLG 379 (436)
Q Consensus 322 nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~R~hl~~~l~ 379 (436)
||.+|..-. ..+..+.+++|+.++.+|...+...+.-+..++.
T Consensus 248 n~SiF~~eG---------------~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~ 290 (477)
T KOG2334|consen 248 NPSIFREEG---------------CLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILR 290 (477)
T ss_pred CCceeeecC---------------CchHHHHHHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 999997421 2334567888998887765444334444444333
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=288.70 Aligned_cols=222 Identities=23% Similarity=0.305 Sum_probs=181.8
Q ss_pred CCcEEEcc-CCCCCcHHHHHHHHHhCCCeEEe---------------------CcccchhhccC-hhhhhhhhh--ccCC
Q 013813 102 RPKLIVAP-MVDNSELPFRMLCRRYGAEAAYT---------------------PMLHSRIFTES-EKYRNEEFA--TCKE 156 (436)
Q Consensus 102 ~~~i~lAP-M~gvtd~~fR~l~~~~Ga~l~~T---------------------emisa~~l~~~-~~~~~~~~~--~~~~ 156 (436)
++|+++|| |.+.++..||.+++. |+++++| +|+++..+.+. .......+. ..+.
T Consensus 11 ~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~ 89 (300)
T TIGR01037 11 KNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEF 89 (300)
T ss_pred CCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccC
Confidence 67999999 579999999998875 9999999 66666665442 211111121 2233
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC---CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~---g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
+.|+++||+|++++++.++|+.+++ ++|+||||+|||+.+ ++|+.++++++++.+|++++++.+++||+||++
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~ 165 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTDVPVFAKLS 165 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 5699999999999999999998873 489999999999964 489999999999999999999999999999987
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCccc--------------ccCCCCCccC----HHHHHHHHhhCCCcEEEccCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------EKDGKKFRAD----WNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~--------------~~~~~~g~ad----~~~i~~ik~~~~iPVianGGI 295 (436)
. +.++..++++.++++|+|+|+||+++.. ...+++|++. ++.++++++.+++|||+||||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI 243 (300)
T TIGR01037 166 P--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGI 243 (300)
T ss_pred C--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCC
Confidence 5 4567889999999999999999865421 0112344444 478899999999999999999
Q ss_pred CCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 296 RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
.|++|+.++++ .|||+||+||+++.|||+|.++..
T Consensus 244 ~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~i~~ 278 (300)
T TIGR01037 244 TSFEDALEFLM-AGASAVQVGTAVYYRGFAFKKIIE 278 (300)
T ss_pred CCHHHHHHHHH-cCCCceeecHHHhcCchHHHHHHH
Confidence 99999999998 599999999999999999987753
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=270.97 Aligned_cols=262 Identities=19% Similarity=0.215 Sum_probs=196.4
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHHHH--HHhCCCcEEEccCCCCCcH-HHHHHH
Q 013813 46 LLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAHW--TKLGRPKLIVAPMVDNSEL-PFRMLC 122 (436)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lg~~~i~lAPM~gvtd~-~fR~l~ 122 (436)
||..++.| ..=.||..++|.+.+......++.+..++++. +++... +|-.+.-.+ -||.-.
T Consensus 1 ~l~~~~~G------------l~l~nPi~~aag~~~~~~~~~~~~~~~G~Gavv~kti~~~----~~~~gn~~pr~~~~~~ 64 (299)
T cd02940 1 DLSVTFCG------------IKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLD----KDIVTNVSPRIARLRT 64 (299)
T ss_pred CCceEECC------------EEcCCCCEeCCcCCCCCHHHHHHHHHhCCCEEEeccccCc----CCCCCCCCCeEEEeCC
Confidence 45667777 67789999998776655555655555555532 443322 122221111 111000
Q ss_pred H-HhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHHHHHHHcC-CCcEEEEecCCCchhhhc
Q 013813 123 R-RYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLNAARRVEP-YCDYVDINLGCPQRIARR 199 (436)
Q Consensus 123 ~-~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~ 199 (436)
- ..-.++.++||+++..+....+.... +.....+.|+++|++|+ +++++.++|+.+++ |+|+||||+|||+....+
T Consensus 65 ~~~n~~g~~n~e~~s~~~~~~~~~~~~~-~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~ 143 (299)
T cd02940 65 SGRGQIGFNNIELISEKPLEYWLKEIRE-LKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPER 143 (299)
T ss_pred CchhcccccCCccccccCHHHHHHHHHH-HHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCC
Confidence 0 02236789999998876543332222 22212378999999998 99999999998875 899999999999984444
Q ss_pred CcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec--------------------
Q 013813 200 GNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH-------------------- 259 (436)
Q Consensus 200 ~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH-------------------- 259 (436)
++|+.++++|+.+.+|++++++.+++||+||+|. +..+..++++.++++|+|+|+++
T Consensus 144 -~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~ 220 (299)
T cd02940 144 -GMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGV 220 (299)
T ss_pred -CCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccc
Confidence 5899999999999999999999999999999886 44578899999999999999854
Q ss_pred -cCcccccCCCCCccC----HHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 260 -GRTRDEKDGKKFRAD----WNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 260 -gRt~~~~~~~~g~ad----~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
+|+.. .+++|++. |+.|.++++.+ ++|||+||||.|.+|+.+++. +|||+|||||+++. +|.++.++.
T Consensus 221 ~~~~~~--gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i~ 296 (299)
T cd02940 221 EGKTTY--GGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDMC 296 (299)
T ss_pred cCCCCc--CcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHH-cCCChheEceeecccCCcHHHHHh
Confidence 34332 35667766 89999999999 899999999999999999998 69999999999877 999998775
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=258.87 Aligned_cols=223 Identities=19% Similarity=0.233 Sum_probs=177.4
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhh----------------------hhhhh--ccCCC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYR----------------------NEEFA--TCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~----------------------~~~~~--~~~~e 157 (436)
++|+++|-=..-++..||.++...|++.++|++|+.+....+...+ ...+. ....+
T Consensus 10 ~nP~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~ 89 (296)
T cd04740 10 KNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFG 89 (296)
T ss_pred CCCCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCC
Confidence 6788888322228889999998777999999999865432221110 00111 12357
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
.|+++||+|+++++++++|+.+++ |+|+||||++||+.+ +.|+.++++++++.++++++++.+++||+||++.
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-- 163 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-- 163 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC--
Confidence 899999999999999999998866 799999999999963 2378889999999999999999999999999765
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCccc---------c-----cCCCCCcc----CHHHHHHHHhhCCCcEEEccCCCCH
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRD---------E-----KDGKKFRA----DWNAIKAVKNALRIPVLANGNVRHM 298 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~---------~-----~~~~~g~a----d~~~i~~ik~~~~iPVianGGI~s~ 298 (436)
+.++..++++.++++|+|+|++++++.. . ..+++|++ .|+.++++++.+++|||++|||.++
T Consensus 164 ~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 164 NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 4457889999999999999998644321 0 01233333 5688999999999999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 299 EDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
+|+.++++. |||+||+||+++.||++|.++..
T Consensus 244 ~da~~~l~~-GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 244 EDALEFLMA-GASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred HHHHHHHHc-CCCEEEEchhhhcChHHHHHHHH
Confidence 999999985 99999999999999999998763
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=275.34 Aligned_cols=263 Identities=18% Similarity=0.231 Sum_probs=200.8
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHHH--HHHhCCCcEEEccCCCCC-cHHHHH
Q 013813 44 DDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAH--WTKLGRPKLIVAPMVDNS-ELPFRM 120 (436)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lg~~~i~lAPM~gvt-d~~fR~ 120 (436)
|+||.+++.| ..=.||..++|.|.+++.....+.++.+|++ .+++. .+..... -.-||.
T Consensus 1 m~~L~~~~~G------------l~l~nPv~~aag~~~~~~~~~~~~~~~g~Gavv~kti~------~~~gn~~~pr~~~~ 62 (420)
T PRK08318 1 MADLSITFCG------------IKSPNPFWLASAPPTNKYYNVARAFEAGWGGVVWKTLG------PPIVNVSSPRFGAL 62 (420)
T ss_pred CCCceEEECC------------EecCCCcEeCCcCCCCCHHHHHHHHHhCCCEEEEeecC------CCCCCCCCCeEEEe
Confidence 6789999999 8999999999999988887777777766663 24443 1111211 111111
Q ss_pred HHH-HhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHHHHHHHcC-CCcEEEEecCCCchhh
Q 013813 121 LCR-RYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLNAARRVEP-YCDYVDINLGCPQRIA 197 (436)
Q Consensus 121 l~~-~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~ 197 (436)
-.. ..-.++.++||+++..+....+.... +.....+.|+++||+|+ ++++++++++.+++ |+|+||||+|||++..
T Consensus 63 ~~~~~~~~g~~n~~~~s~~~~~~~~~~~~~-~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~ 141 (420)
T PRK08318 63 VKEDRRFIGFNNIELITDRPLEVNLREIRR-VKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMS 141 (420)
T ss_pred cCCCcccccccCcccccccCHHHHHHHHHH-HHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcc
Confidence 000 01125778899987766443322222 22122358999999999 99999999998865 7999999999999543
Q ss_pred hcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-------------------
Q 013813 198 RRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV------------------- 258 (436)
Q Consensus 198 ~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V------------------- 258 (436)
.+ ++|+.++++++.+.+|++++++.+++||+||+|. +..+..++++.++++|+|+|++
T Consensus 142 ~~-~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p 218 (420)
T PRK08318 142 ER-GMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP--NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMP 218 (420)
T ss_pred cc-CCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCc
Confidence 34 5799999999999999999999999999999885 4456789999999999999984
Q ss_pred --ccCcccccCCCCCcc----CHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchh
Q 013813 259 --HGRTRDEKDGKKFRA----DWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAG 328 (436)
Q Consensus 259 --HgRt~~~~~~~~g~a----d~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~ 328 (436)
|+|+.. .+++|++ .|+.|+++++.+ ++|||++|||.|.+|+.+++. .|||+||||||++. +|.++.+
T Consensus 219 ~~~~~~~~--gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~ 295 (420)
T PRK08318 219 IVNGKSSH--GGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVED 295 (420)
T ss_pred eecCCCCc--ccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHH
Confidence 333322 3456666 599999999987 899999999999999999998 59999999999888 8999887
Q ss_pred hhh
Q 013813 329 FRT 331 (436)
Q Consensus 329 i~~ 331 (436)
+..
T Consensus 296 I~~ 298 (420)
T PRK08318 296 MIS 298 (420)
T ss_pred HHH
Confidence 764
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=250.35 Aligned_cols=232 Identities=18% Similarity=0.197 Sum_probs=183.9
Q ss_pred CCcEEEccCC-------CCCcHHHHHHHHHh--CCCeEEeCcccchh----h-----ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMV-------DNSELPFRMLCRRY--GAEAAYTPMLHSRI----F-----TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~-------gvtd~~fR~l~~~~--Ga~l~~Temisa~~----l-----~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||. .+|+..++.+.++. |+++++||.+.... . ..+... +...-..+..+.+
T Consensus 13 kNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~ 92 (343)
T cd04734 13 RNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAV 92 (343)
T ss_pred cCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhcCCe
Confidence 7899999995 34777777777655 68999999876431 1 011111 1111234567888
Q ss_pred EEEEecCC-----------------C---------------------HHHHHHHHHHH-cCCCcEEEEec--C-------
Q 013813 160 LFVQFCAN-----------------D---------------------PEILLNAARRV-EPYCDYVDINL--G------- 191 (436)
Q Consensus 160 livQL~g~-----------------d---------------------~e~~~~AA~~v-~~g~D~IdLN~--G------- 191 (436)
+++||+-. + .++|++||+++ +.|||+||||+ |
T Consensus 93 ~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFl 172 (343)
T cd04734 93 IMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFL 172 (343)
T ss_pred EEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhh
Confidence 99998621 0 37889999776 56999999999 5
Q ss_pred CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC--------ChhhHHHHHHHHHHcC-ccEEEeccCc
Q 013813 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP--------NLQDTIKYAKMLEDAG-CSLLAVHGRT 262 (436)
Q Consensus 192 CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~--------~~~d~~~~ak~le~aG-~d~I~VHgRt 262 (436)
||..|.|+|+||++|.++.+++.+|+++|++.++.++.||+|++. +.++++++++.++++| +|+|+||++.
T Consensus 173 sp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~ 252 (343)
T cd04734 173 SPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGS 252 (343)
T ss_pred CCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 788999999999999999999999999999999988889998863 4568899999999998 8999997554
Q ss_pred cccc---------CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhh
Q 013813 263 RDEK---------DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333 (436)
Q Consensus 263 ~~~~---------~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~ 333 (436)
.... ..+....+|+.++.+++.+++||++||||.++++++++++.++||+||+||+++.||||++++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~ 332 (343)
T cd04734 253 YYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGR 332 (343)
T ss_pred CCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCC
Confidence 3221 0112234689999999999999999999999999999999988999999999999999999987654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=247.16 Aligned_cols=169 Identities=21% Similarity=0.324 Sum_probs=144.7
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-C-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~-g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
.+.|+++||+|+++++|+++|+.+++ | +|+||||++||+.. ++ |..+.++++++.++++++++.+++||+||++
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~---~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK---HG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC---CC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 37899999999999999999998876 6 99999999999841 22 7788999999999999999999999999987
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc--------------cCCCCC----ccCHHHHHHHHhhCCCcEEEccCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKF----RADWNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~--------------~~~~~g----~ad~~~i~~ik~~~~iPVianGGI 295 (436)
. +.++..++++.++++|+|+|++++++... ..+.++ +..+++++++++.+++|||++|||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI 243 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGI 243 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCC
Confidence 5 44688899999999999999986543211 011222 246899999999999999999999
Q ss_pred CCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 296 RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
.|++|+.+++.. |||+||+||+++.+|++|.++..
T Consensus 244 ~~~~da~~~l~a-GAd~V~igr~ll~~P~~~~~i~~ 278 (301)
T PRK07259 244 SSAEDAIEFIMA-GASAVQVGTANFYDPYAFPKIIE 278 (301)
T ss_pred CCHHHHHHHHHc-CCCceeEcHHHhcCcHHHHHHHH
Confidence 999999999985 99999999999999999998764
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=241.00 Aligned_cols=169 Identities=22% Similarity=0.356 Sum_probs=147.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
.+.|+++||+|++++++.++++.+++ |+|+||||++||+... |..++++++.+.++++++++.+++||+||++.
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 57999999999999999999988866 7999999999999532 44588999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCccccc--------------CCCCCc----cCHHHHHHHHhhC--CCcEEEccC
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------DGKKFR----ADWNAIKAVKNAL--RIPVLANGN 294 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~--------------~~~~g~----ad~~~i~~ik~~~--~iPVianGG 294 (436)
+.+.++..++++.++++|+|+|++|+++.... .+.+|. ..+++++++++.+ ++|||++||
T Consensus 172 ~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GG 251 (289)
T cd02810 172 YFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGG 251 (289)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 88888999999999999999999998764211 111222 2578899999988 899999999
Q ss_pred CCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhh
Q 013813 295 VRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 330 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~ 330 (436)
|.|++|+.+++.. |||+||+||+++.| |++|.++.
T Consensus 252 I~~~~da~~~l~~-GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 252 IDSGEDVLEMLMA-GASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred CCCHHHHHHHHHc-CccHheEcHHHHhcCccHHHHHh
Confidence 9999999999985 99999999999999 99999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=245.56 Aligned_cols=230 Identities=14% Similarity=0.145 Sum_probs=183.4
Q ss_pred CCcEEEccCCC---------CCcHHHHHHHHHh--CCCeEEeCcccch--hh-------ccChhh----hhhhhhccCCC
Q 013813 102 RPKLIVAPMVD---------NSELPFRMLCRRY--GAEAAYTPMLHSR--IF-------TESEKY----RNEEFATCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~g---------vtd~~fR~l~~~~--Ga~l~~Temisa~--~l-------~~~~~~----~~~~~~~~~~e 157 (436)
+|+|++|||.. .|+..++.+.++. |+++++||.+... .. ..+... ++..-..+..+
T Consensus 15 kNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G 94 (337)
T PRK13523 15 KNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHG 94 (337)
T ss_pred ecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcC
Confidence 68999999953 2445566555544 6899999966432 11 011111 11112345678
Q ss_pred CCEEEEecCC-----------------------C------------HHHHHHHHHHHc-CCCcEEEEecC---------C
Q 013813 158 RPLFVQFCAN-----------------------D------------PEILLNAARRVE-PYCDYVDINLG---------C 192 (436)
Q Consensus 158 ~plivQL~g~-----------------------d------------~e~~~~AA~~v~-~g~D~IdLN~G---------C 192 (436)
..+++||... . .++|++||+++. +|||+||||+| |
T Consensus 95 ~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlS 174 (337)
T PRK13523 95 AKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLS 174 (337)
T ss_pred CEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcC
Confidence 8899998431 0 378889997764 59999999998 8
Q ss_pred CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------CCChhhHHHHHHHHHHcCccEEEeccCccccc
Q 013813 193 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 266 (436)
Q Consensus 193 P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~ 266 (436)
|..|.|+|.||++|.++.+++.+|+++|+++++.||+||++. |.+.++..++++.+++.|+|+|+||+++....
T Consensus 175 p~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~ 254 (337)
T PRK13523 175 PLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPA 254 (337)
T ss_pred CccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC
Confidence 999999999999999999999999999999999999999997 45678899999999999999999999874321
Q ss_pred --CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 267 --DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 267 --~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
..++ ..+|++.+++++.+++||+++|+|.++++++++++.++||+|++||+++.||+|+.++...
T Consensus 255 ~~~~~~-~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~ 321 (337)
T PRK13523 255 RIDVYP-GYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKE 321 (337)
T ss_pred CCCCCc-cccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHH
Confidence 1122 3478999999999999999999999999999999998899999999999999999998753
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=239.15 Aligned_cols=230 Identities=19% Similarity=0.208 Sum_probs=180.6
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh--CCCeEEeCcccchh----hc---c-----Chhh----hhhhhhccC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY--GAEAAYTPMLHSRI----FT---E-----SEKY----RNEEFATCK 155 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~--Ga~l~~Temisa~~----l~---~-----~~~~----~~~~~~~~~ 155 (436)
+|+|++|||.. .|+.....+.++. |+++++||.+.... .. . +... ++..-..+.
T Consensus 14 kNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~ 93 (338)
T cd04733 14 PNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFREWAAAAKA 93 (338)
T ss_pred cccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHHHHHHHHHHHHh
Confidence 68999999953 3566666666655 68999999754321 11 0 1111 111112345
Q ss_pred CCCCEEEEecCC-----------------------------------------CHHHHHHHHHHHc-CCCcEEEEecCC-
Q 013813 156 EDRPLFVQFCAN-----------------------------------------DPEILLNAARRVE-PYCDYVDINLGC- 192 (436)
Q Consensus 156 ~e~plivQL~g~-----------------------------------------d~e~~~~AA~~v~-~g~D~IdLN~GC- 192 (436)
.+..+++||+.. ..++|++||+++. .|||+||||+||
T Consensus 94 ~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~g 173 (338)
T cd04733 94 NGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHG 173 (338)
T ss_pred cCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhh
Confidence 667777886530 1478899998765 599999999996
Q ss_pred --------CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec------cCCChhhHHHHHHHHHHcCccEE
Q 013813 193 --------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR------VFPNLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 193 --------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR------lg~~~~d~~~~ak~le~aG~d~I 256 (436)
|..|.|+|.||++|+++++++.++|++|++++ ++||.||++ .|++.++++++++.|++.|+|+|
T Consensus 174 yLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~i 253 (338)
T cd04733 174 YLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLV 253 (338)
T ss_pred hHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999998 489999997 46788899999999999999999
Q ss_pred EeccCcccccCCC---------CCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 257 AVHGRTRDEKDGK---------KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 257 ~VHgRt~~~~~~~---------~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
.||+++..+.... .....++..++||+.+++||+++|+|.++++++++++.++||+|++||+++.||+|+.
T Consensus 254 ev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~ 333 (338)
T cd04733 254 ELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPN 333 (338)
T ss_pred EecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHH
Confidence 9999976432210 0112368888999999999999999999999999999988999999999999999999
Q ss_pred hhhh
Q 013813 328 GFRT 331 (436)
Q Consensus 328 ~i~~ 331 (436)
+++.
T Consensus 334 k~~~ 337 (338)
T cd04733 334 KLLA 337 (338)
T ss_pred HHhc
Confidence 8763
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=236.75 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=174.5
Q ss_pred CCCCCccccCCCCCCCCCCchhHhHHHHHHHH--HHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccC
Q 013813 66 PSSLPETASSSLPSPRGYLSGEARAERAWAHW--TKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTES 143 (436)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~ 143 (436)
..-.||..++|.+.+......++.++.+|++. +++... |-.+.-.+ | +.+. ..+++...-++...+...
T Consensus 6 l~l~nPi~~Asg~~~~~~e~~~~~~~~G~Gavv~ktit~~-----~~~gn~~p--r-~~~~-~~~~~N~~G~~n~g~~~~ 76 (294)
T cd04741 6 LTISPPLMNAAGPWCTTLEDLLELAASSTGAVTTRSSTLA-----GRPGNPEP--R-YYAF-PLGSINSLGLPNLGLDYY 76 (294)
T ss_pred eeCCCCCEECCCCCCCCHHHHHHHHHcCCcEEEeCcccCC-----CCCCCCCC--c-EEec-CccccccccCCCcCHHHH
Confidence 67789999998887766666666677777744 554432 22222211 1 1111 222222222222222111
Q ss_pred hhhhhhhhh-ccCCCCCEEEEecCCCHHHHHHHHHHHcC----CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHH
Q 013813 144 EKYRNEEFA-TCKEDRPLFVQFCANDPEILLNAARRVEP----YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 218 (436)
Q Consensus 144 ~~~~~~~~~-~~~~e~plivQL~g~d~e~~~~AA~~v~~----g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~ 218 (436)
......... ....+.|+++||+|+ ++++.++++.+++ ++|+||||++||+.. + +..+..+++.+.+|++
T Consensus 77 ~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~---~--~~~~~~~~~~~~~i~~ 150 (294)
T cd04741 77 LEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP---G--KPPPAYDFDATLEYLT 150 (294)
T ss_pred HHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC---C--cccccCCHHHHHHHHH
Confidence 111111001 113578999999999 9999999987754 689999999999952 1 2357789999999999
Q ss_pred HHhcccCccEEEEeccCCChhhHHHHHHHHHHc--CccEEEe----------cc-Ccc-----cc-cCCCCCc----cCH
Q 013813 219 KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA--GCSLLAV----------HG-RTR-----DE-KDGKKFR----ADW 275 (436)
Q Consensus 219 av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~a--G~d~I~V----------Hg-Rt~-----~~-~~~~~g~----ad~ 275 (436)
++++.+++||+||+|.+++..+..++++.+.++ |+++|++ |. |+. .+ ..+.+|+ ..+
T Consensus 151 ~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al 230 (294)
T cd04741 151 AVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLAL 230 (294)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHH
Confidence 999999999999999988877888899999888 9999995 43 221 11 1122332 245
Q ss_pred HHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhhh
Q 013813 276 NAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 331 (436)
Q Consensus 276 ~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~~ 331 (436)
+.|+++++.+ ++|||++|||.|.+|+.+++. .|||+|||||+++. +||+|.++..
T Consensus 231 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~~ 288 (294)
T cd04741 231 GNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARIEK 288 (294)
T ss_pred HHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHHHH
Confidence 6678888888 499999999999999999998 59999999999995 9999998753
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=244.75 Aligned_cols=266 Identities=17% Similarity=0.211 Sum_probs=200.7
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHH--HHHHhCCCcEEEccCCCCCcHHH
Q 013813 41 QDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWA--HWTKLGRPKLIVAPMVDNSELPF 118 (436)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lg~~~i~lAPM~gvtd~~f 118 (436)
...|+||..++.| .+.+||+|++|.|.+....+.++.++++|+ .||+++..+ ++....+.
T Consensus 5 ~~~~~dLst~~~G------------l~l~NP~i~ASgp~t~~~e~~~~~~~~g~GAVV~KTi~~~~---~~~~n~~p--- 66 (385)
T PLN02495 5 AASEPDLSVTVNG------------LKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDA---SKVINVTP--- 66 (385)
T ss_pred ccCCCcceEEECC------------EEcCCCcEeCCccCCCCHHHHHHHHhcCCeEEEeccccCCc---cccCCCCC---
Confidence 3459999999999 999999999999999999999999999999 889887432 12222221
Q ss_pred HHHHHH-------h---CCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHHHHHHHcC-CCcEE
Q 013813 119 RMLCRR-------Y---GAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLNAARRVEP-YCDYV 186 (436)
Q Consensus 119 R~l~~~-------~---Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~AA~~v~~-g~D~I 186 (436)
| ++.- + -.++...|.++.+.+......... ++...+++|+|++|+| .+++++.+.++.+++ |+|+|
T Consensus 67 r-~~~~~~g~~~~~~~n~iGl~N~~~~s~~g~~~~l~~i~~-~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~i 144 (385)
T PLN02495 67 R-YARLRAGANGSAKGRVIGWQNIELISDRPFETMLAEFKQ-LKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDAL 144 (385)
T ss_pred e-EEecCcccccccccccccccCcccccccCHHHHHHHHHH-HHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEE
Confidence 1 1111 1 114455556655544332222211 2222347899999977 899999999998876 79999
Q ss_pred EEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc--
Q 013813 187 DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-- 264 (436)
Q Consensus 187 dLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~-- 264 (436)
|||++||+....++ +|..+.++|+.+.+|++++++.+.+||.||+ +++..+..++++.+.++|+|+|++..++..
T Consensus 145 ELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL--sPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~ 221 (385)
T PLN02495 145 EINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKATVPVWAKM--TPNITDITQPARVALKSGCEGVAAINTIMSVM 221 (385)
T ss_pred EEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhcCceEEEe--CCChhhHHHHHHHHHHhCCCEEEEecccCccc
Confidence 99999999765555 5899999999999999999999999999995 456677889999999999999988654431
Q ss_pred -----c------------cCCCCCc----cCHHHHHHHHhhC------CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 265 -----E------------KDGKKFR----ADWNAIKAVKNAL------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 265 -----~------------~~~~~g~----ad~~~i~~ik~~~------~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
. ..+.+|+ ..+..+.++++.+ ++||++.|||.|.+|+.+++.. ||+.|++|+
T Consensus 222 ~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~a-GAs~VQv~T 300 (385)
T PLN02495 222 GINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILL-GADTVQVCT 300 (385)
T ss_pred ccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHh-CCCceeEee
Confidence 0 1112222 2334455566654 4999999999999999999997 999999999
Q ss_pred HHhhC-Cccchhhh
Q 013813 318 SLLEN-PALFAGFR 330 (436)
Q Consensus 318 gal~n-P~lf~~i~ 330 (436)
+++.+ |.++.++.
T Consensus 301 a~~~~Gp~vi~~i~ 314 (385)
T PLN02495 301 GVMMHGYPLVKNLC 314 (385)
T ss_pred eeeecCcHHHHHHH
Confidence 99888 99988764
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=234.83 Aligned_cols=229 Identities=24% Similarity=0.311 Sum_probs=181.1
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh--CCCeEEeCcccchh----h-----ccChh----hhhhhhhccCCCC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY--GAEAAYTPMLHSRI----F-----TESEK----YRNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~--Ga~l~~Temisa~~----l-----~~~~~----~~~~~~~~~~~e~ 158 (436)
+|++++|||.. .|+..++.+.++. |+++++||.+.... . ..++. .+...-..+..+.
T Consensus 12 ~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~ 91 (327)
T cd02803 12 KNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGA 91 (327)
T ss_pred ccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhCCC
Confidence 78999999963 4666677776655 68999999765321 1 01111 1111112345566
Q ss_pred CEEEEecCCC--------------------------------------HHHHHHHHHHH-cCCCcEEEEecC--------
Q 013813 159 PLFVQFCAND--------------------------------------PEILLNAARRV-EPYCDYVDINLG-------- 191 (436)
Q Consensus 159 plivQL~g~d--------------------------------------~e~~~~AA~~v-~~g~D~IdLN~G-------- 191 (436)
.+++||+... .++|++||+++ +.|||+||||++
T Consensus 92 ~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qF 171 (327)
T cd02803 92 KIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQF 171 (327)
T ss_pred HhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHh
Confidence 6777765210 37888999776 459999999987
Q ss_pred -CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC------CChhhHHHHHHHHHHcCccEEEeccCc
Q 013813 192 -CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHGRT 262 (436)
Q Consensus 192 -CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg------~~~~d~~~~ak~le~aG~d~I~VHgRt 262 (436)
||..|.+++.||+++.++.+++.++++++++.+ ++||.||++.. ++.+++.++++.+++.|+|+|+|++++
T Consensus 172 lsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 172 LSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred cCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 898899999999999999999999999999998 68999999863 456788999999999999999999987
Q ss_pred ccccCC------CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 263 RDEKDG------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 263 ~~~~~~------~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
..+... .....+++.++.+++.+++||+++|||.|+++++++++.++||+|++||+++.||+|+.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 252 YESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred CcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHh
Confidence 653221 11245788899999999999999999999999999999889999999999999999999875
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=237.48 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=145.9
Q ss_pred CCCCEEEEecCCC-------HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC---
Q 013813 156 EDRPLFVQFCAND-------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--- 225 (436)
Q Consensus 156 ~e~plivQL~g~d-------~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--- 225 (436)
.+.|+++||+|++ .+++++.++.+..++|+||||++||+.. |...+++++.+.++++++++.++
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~~~~~~~~ 200 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVKEERNKLG 200 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------ccccccCHHHHHHHHHHHHHHHhhcc
Confidence 4789999999997 7889999988877899999999999852 34448999999999999999886
Q ss_pred --ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccccc-----------CCCCCc----cCHHHHHHHHhhC--C
Q 013813 226 --VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNAL--R 286 (436)
Q Consensus 226 --iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~-----------~~~~g~----ad~~~i~~ik~~~--~ 286 (436)
+||+||++.+.+.++..++++.++++|+|+|++|+++.... .+++|+ ..|+.++.+++.+ +
T Consensus 201 ~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ 280 (327)
T cd04738 201 KKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGK 280 (327)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCC
Confidence 99999999877777889999999999999999999875321 234444 3488999999998 7
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhhh
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFRT 331 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~~ 331 (436)
+||+++|||.|++|+.+++. .|||+|||||+++.+ |++|.++..
T Consensus 281 ipIi~~GGI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred CcEEEECCCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHHHh
Confidence 99999999999999999998 599999999999775 999998753
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=233.65 Aligned_cols=230 Identities=20% Similarity=0.287 Sum_probs=176.6
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh-CCCeEEeCcccchh----hc-----cChh----hhhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY-GAEAAYTPMLHSRI----FT-----ESEK----YRNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~-Ga~l~~Temisa~~----l~-----~~~~----~~~~~~~~~~~e~p 159 (436)
+|+|++|||.. +|+..+..+.++. |+++++||.+.... .. .+.. .+...-..+..+..
T Consensus 14 kNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~ 93 (353)
T cd04735 14 KNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSKGAK 93 (353)
T ss_pred eCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHHHHHHHHHHhCCCe
Confidence 68999999952 4666666666554 68899999765421 10 0111 11121234567788
Q ss_pred EEEEecCCC----------------------------------------HHHHHHHHHHHc-CCCcEEEEecC-------
Q 013813 160 LFVQFCAND----------------------------------------PEILLNAARRVE-PYCDYVDINLG------- 191 (436)
Q Consensus 160 livQL~g~d----------------------------------------~e~~~~AA~~v~-~g~D~IdLN~G------- 191 (436)
+++||+-.. .++|++||++++ .|||+||||++
T Consensus 94 i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~q 173 (353)
T cd04735 94 AILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQ 173 (353)
T ss_pred EEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHH
Confidence 888884210 368889997765 59999999974
Q ss_pred --CCchhhhcCcccccccCChHHHHHHHHHHhcccC----ccEEEEeccCC--------ChhhHHHHHHHHHHcCccEEE
Q 013813 192 --CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN----VPVSCKIRVFP--------NLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 192 --CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~----iPVsVKiRlg~--------~~~d~~~~ak~le~aG~d~I~ 257 (436)
||..|.|+|.||+++.++.+++.||+++|+++++ .++.|++|++. +.++.+++++.++++|+|+|+
T Consensus 174 Flsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~ 253 (353)
T cd04735 174 FFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLH 253 (353)
T ss_pred hcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999999999999999987 66777777743 457889999999999999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
||++.............+..++.+++.+ ++||+++|||.|+++++++++. |||+|++||+++.||+++.+++.+
T Consensus 254 Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR~liadPdl~~k~~~G 329 (353)
T cd04735 254 ISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALET-GADLVAIGRGLLVDPDWVEKIKEG 329 (353)
T ss_pred eccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc-CCChHHHhHHHHhCccHHHHHHcC
Confidence 9986543221111123567777788776 8999999999999999999998 899999999999999999998754
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-26 Score=233.42 Aligned_cols=231 Identities=22% Similarity=0.249 Sum_probs=179.1
Q ss_pred CCcEEEccCCC--C-------CcHHHHHHHHHh--CCCeEEeCcccchh----h--------ccC-hh----hhhhhhhc
Q 013813 102 RPKLIVAPMVD--N-------SELPFRMLCRRY--GAEAAYTPMLHSRI----F--------TES-EK----YRNEEFAT 153 (436)
Q Consensus 102 ~~~i~lAPM~g--v-------td~~fR~l~~~~--Ga~l~~Temisa~~----l--------~~~-~~----~~~~~~~~ 153 (436)
+|++++|||.. . |+.....+.++. |+++++||...... . ..+ +. .++..-..
T Consensus 13 kNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~dav 92 (382)
T cd02931 13 KNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTERV 92 (382)
T ss_pred eCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHHHH
Confidence 68999999952 2 445555554444 78999999754321 0 001 11 11111234
Q ss_pred cCCCCCEEEEecCC----------------------------C-------------HHHHHHHHHHHc-CCCcEEEEec-
Q 013813 154 CKEDRPLFVQFCAN----------------------------D-------------PEILLNAARRVE-PYCDYVDINL- 190 (436)
Q Consensus 154 ~~~e~plivQL~g~----------------------------d-------------~e~~~~AA~~v~-~g~D~IdLN~- 190 (436)
+..+.++++||+.. . .++|++||++++ +|||+||||+
T Consensus 93 h~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~a 172 (382)
T cd02931 93 HAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAV 172 (382)
T ss_pred HHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 56788999999521 0 367889998774 5999999998
Q ss_pred --CC-------CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc--------------------CCChh
Q 013813 191 --GC-------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV--------------------FPNLQ 239 (436)
Q Consensus 191 --GC-------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl--------------------g~~~~ 239 (436)
|| |..|.|+|.||++|+++.+++.+|+++|++++ ++||++|++. |.+.+
T Consensus 173 h~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e 252 (382)
T cd02931 173 HEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLE 252 (382)
T ss_pred ccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHH
Confidence 76 88999999999999999999999999999998 5799999984 33567
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccC-C----CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKD-G----KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~-~----~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.+++++.++++|+|+|+||+++..... . +.. ...++.++.+++.+++||+++|+|.++++++++++.++||+|
T Consensus 253 ~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V 332 (382)
T cd02931 253 EGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMI 332 (382)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 8899999999999999999998754311 0 101 123678899999999999999999999999999999889999
Q ss_pred eeehHHhhCCccchhhhhh
Q 013813 314 LSAESLLENPALFAGFRTA 332 (436)
Q Consensus 314 mIGRgal~nP~lf~~i~~~ 332 (436)
++||+++.||+|+++++.+
T Consensus 333 ~~gR~~ladP~l~~k~~~g 351 (382)
T cd02931 333 SLGRPLLADPDVVNKIRRG 351 (382)
T ss_pred eechHhHhCccHHHHHHcC
Confidence 9999999999999998764
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=228.81 Aligned_cols=229 Identities=19% Similarity=0.227 Sum_probs=176.5
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh--CCCeEEeCcccchhh---------ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY--GAEAAYTPMLHSRIF---------TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~--Ga~l~~Temisa~~l---------~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. .|+..+..+.++. |+++++||.+....- ..+... ++..-..+..+..
T Consensus 13 ~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~ 92 (336)
T cd02932 13 KNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQGAK 92 (336)
T ss_pred eccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhcCCc
Confidence 68999999953 3555565555544 789999997643210 011111 1111124556778
Q ss_pred EEEEecCC---------------------------------------------------CHHHHHHHHHHH-cCCCcEEE
Q 013813 160 LFVQFCAN---------------------------------------------------DPEILLNAARRV-EPYCDYVD 187 (436)
Q Consensus 160 livQL~g~---------------------------------------------------d~e~~~~AA~~v-~~g~D~Id 187 (436)
+++||+.. -.++|++||+++ +.|||+||
T Consensus 93 ~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVe 172 (336)
T cd02932 93 IGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAVEAGFDVIE 172 (336)
T ss_pred EEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 88886310 036888899765 56999999
Q ss_pred EecCC---------CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc------CCChhhHHHHHHHHHH
Q 013813 188 INLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLED 250 (436)
Q Consensus 188 LN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl------g~~~~d~~~~ak~le~ 250 (436)
||+|| |..|.++++||++|+++++++.+|+++|++.+ ++||.||++. +++.+++.++++.+++
T Consensus 173 i~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~ 252 (336)
T cd02932 173 IHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKE 252 (336)
T ss_pred EccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHH
Confidence 99986 88999999999999999999999999999999 6899999983 5677889999999999
Q ss_pred cCccEEEeccCcc--cccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 251 AGCSLLAVHGRTR--DEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 251 aG~d~I~VHgRt~--~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
.|+|+|.||.... .+........+++.++++++.+++||+++|+|.++++++++++.+.||+||+||+++.||+|+.+
T Consensus 253 ~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 253 LGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH 332 (336)
T ss_pred cCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence 9999999985432 22111111235688899999999999999999999999999998779999999999999999987
Q ss_pred hh
Q 013813 329 FR 330 (436)
Q Consensus 329 i~ 330 (436)
+.
T Consensus 333 ~~ 334 (336)
T cd02932 333 AA 334 (336)
T ss_pred Hh
Confidence 64
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=227.91 Aligned_cols=225 Identities=16% Similarity=0.213 Sum_probs=177.9
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh-CCCeEEeCcccchhh---------ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY-GAEAAYTPMLHSRIF---------TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~-Ga~l~~Temisa~~l---------~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. +|+..++.+.++. | ++++||.+..... ..+.+. +...-..+..+.+
T Consensus 14 kNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~ga~ 92 (338)
T cd02933 14 KNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAKGGK 92 (338)
T ss_pred cCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCe
Confidence 78999999952 2556666555544 5 8899997754211 011111 1111134566778
Q ss_pred EEEEecC-----------------------------------C--C------------HHHHHHHHHHHc-CCCcEEEEe
Q 013813 160 LFVQFCA-----------------------------------N--D------------PEILLNAARRVE-PYCDYVDIN 189 (436)
Q Consensus 160 livQL~g-----------------------------------~--d------------~e~~~~AA~~v~-~g~D~IdLN 189 (436)
+++||.. . . .++|++||+++. .|||+||||
T Consensus 93 ~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih 172 (338)
T cd02933 93 IFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAIEAGFDGVEIH 172 (338)
T ss_pred EEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 8888732 0 0 367889998765 599999999
Q ss_pred cCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccC---------CChhhHHHHHHHHHH
Q 013813 190 LGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVF---------PNLQDTIKYAKMLED 250 (436)
Q Consensus 190 ~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg---------~~~~d~~~~ak~le~ 250 (436)
+|| |..|.+.|.||++|.++.+++.+|+++|++.++. +|+||++.. .+.++..++++.+++
T Consensus 173 ~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~ 252 (338)
T cd02933 173 GANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNK 252 (338)
T ss_pred cccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHH
Confidence 998 9999999999999999999999999999999865 899999752 255788899999999
Q ss_pred cCccEEEe-ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 251 AGCSLLAV-HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 251 aG~d~I~V-HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.|+|+|.| ||++..+. ...+|++++.+++.+++||+++|+|. ++++++++++++||+|++||+++.||||+.++
T Consensus 253 ~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~ 327 (338)
T cd02933 253 RGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANPDLVERL 327 (338)
T ss_pred cCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHH
Confidence 99999999 67654432 35789999999999999999999997 99999999998899999999999999999998
Q ss_pred hhh
Q 013813 330 RTA 332 (436)
Q Consensus 330 ~~~ 332 (436)
+.+
T Consensus 328 ~~g 330 (338)
T cd02933 328 KNG 330 (338)
T ss_pred hcC
Confidence 764
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=227.97 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=146.4
Q ss_pred CCCCEEEEecCC-------CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC---
Q 013813 156 EDRPLFVQFCAN-------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--- 225 (436)
Q Consensus 156 ~e~plivQL~g~-------d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--- 225 (436)
.+.|++++|+|+ ..+++++.++.+++++|+||||++||+.. |....++++.+.+|+++|++.++
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr~~~~~~~ 209 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP------GLRDLQYGEALDELLAALKEAQAELH 209 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHhccc
Confidence 468999999987 57899999998888899999999999853 33348899999999999999987
Q ss_pred --ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc-----------cCCCCCc----cCHHHHHHHHhhC--C
Q 013813 226 --VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFR----ADWNAIKAVKNAL--R 286 (436)
Q Consensus 226 --iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-----------~~~~~g~----ad~~~i~~ik~~~--~ 286 (436)
+||+||++.+.+.++..++++.++++|+|+|++|+++.+. ..+++|+ ..|+.++++++.+ +
T Consensus 210 ~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ 289 (344)
T PRK05286 210 GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGR 289 (344)
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999987777789999999999999999999987432 1233443 3788999999998 8
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhhh
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 331 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~~ 331 (436)
+|||++|||.|.+|+.+++. .|||+|||||+++. +|++|.++..
T Consensus 290 ipIig~GGI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~i~~ 334 (344)
T PRK05286 290 LPIIGVGGIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKEIVR 334 (344)
T ss_pred CCEEEECCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHHHHH
Confidence 99999999999999999998 59999999999976 5999998753
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=227.42 Aligned_cols=231 Identities=19% Similarity=0.180 Sum_probs=176.4
Q ss_pred CCcEEEccCC-C------CCcHHHHHHHHHh--CCCeEEeCcccchh----h-----ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMV-D------NSELPFRMLCRRY--GAEAAYTPMLHSRI----F-----TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~-g------vtd~~fR~l~~~~--Ga~l~~Temisa~~----l-----~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||. + .|+..++.+.++. |+++++||.+.... . ..++.. +...-..+..+.+
T Consensus 13 kNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~ 92 (353)
T cd02930 13 RNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGK 92 (353)
T ss_pred ccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 7899999996 2 3667777766655 68999999754321 1 011111 1111234567888
Q ss_pred EEEEecCC----------------------------------CHHHHHHHHHHH-cCCCcEEEEecC---------CCch
Q 013813 160 LFVQFCAN----------------------------------DPEILLNAARRV-EPYCDYVDINLG---------CPQR 195 (436)
Q Consensus 160 livQL~g~----------------------------------d~e~~~~AA~~v-~~g~D~IdLN~G---------CP~~ 195 (436)
+++||+.. -.++|++||+++ ++|||+||||.+ ||..
T Consensus 93 ~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~ 172 (353)
T cd02930 93 IALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRT 172 (353)
T ss_pred EEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCcc
Confidence 99998321 147888999775 569999999864 9999
Q ss_pred hhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC--------CChhhHHHHHHHHHHcCccEEEeccCccccc-
Q 013813 196 IARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK- 266 (436)
Q Consensus 196 ~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg--------~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~- 266 (436)
|.++|.||++|.++.+++.+|+++|++.++.++.|++|++ ++.++++++++.|+++|+|+|+|.....+..
T Consensus 173 N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~ 252 (353)
T cd02930 173 NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARV 252 (353)
T ss_pred CCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC
Confidence 9999999999999999999999999999977766666664 3567889999999999999999953221110
Q ss_pred ---CCCCCc-cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 267 ---DGKKFR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 267 ---~~~~g~-ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
....+. ...+..+++++.+++||+++|+|.++++++++++.++||+||+||+++.||||+++++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g 322 (353)
T cd02930 253 PTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAG 322 (353)
T ss_pred ccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhC
Confidence 011112 234567899999999999999999999999999998899999999999999999998754
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=226.22 Aligned_cols=228 Identities=16% Similarity=0.168 Sum_probs=177.9
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh--CCCeEEeCcccch-h--h--cc-----Chhh----hhhhhhccCCCC
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY--GAEAAYTPMLHSR-I--F--TE-----SEKY----RNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~--Ga~l~~Temisa~-~--l--~~-----~~~~----~~~~~~~~~~e~ 158 (436)
+|+|+++||.. +|+..+..+.++. |+++++||.+... . . .. .... ++..-..+..+.
T Consensus 13 kNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d~vh~~Ga 92 (361)
T cd04747 13 PNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAAGG 92 (361)
T ss_pred eCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHHHHHhcCC
Confidence 78999999963 4777777766655 6789999976542 1 0 00 1111 111112456678
Q ss_pred CEEEEecCCC----------------------------------------HHHHHHHHHHHc-CCCcEEEEecCC-----
Q 013813 159 PLFVQFCAND----------------------------------------PEILLNAARRVE-PYCDYVDINLGC----- 192 (436)
Q Consensus 159 plivQL~g~d----------------------------------------~e~~~~AA~~v~-~g~D~IdLN~GC----- 192 (436)
.+++||+... .++|++||++++ +|||+||||++|
T Consensus 93 ~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~ 172 (361)
T cd04747 93 KIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLID 172 (361)
T ss_pred EEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHH
Confidence 8999983210 258899998764 599999999999
Q ss_pred ----CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc----------CCChhhHHHHHHHHHHcCccEE
Q 013813 193 ----PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV----------FPNLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 193 ----P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl----------g~~~~d~~~~ak~le~aG~d~I 256 (436)
|..|.|+|+||++|.++.+++.+|+++|++++ +.||.||++. |.+.++..++++.+++.|+|+|
T Consensus 173 qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i 252 (361)
T cd04747 173 QFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIF 252 (361)
T ss_pred HhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999998 4899999984 2345677889999999999998
Q ss_pred EeccCcc-cccCCCCCccCHHHHHHHHhhCCCcEEEccCC------------------CCHHHHHHHHHhcCcceeeeeh
Q 013813 257 AVHGRTR-DEKDGKKFRADWNAIKAVKNALRIPVLANGNV------------------RHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 257 ~VHgRt~-~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI------------------~s~eda~~~l~~tGaDgVmIGR 317 (436)
.|..+.. .+. +. ..++.+.+.+|+.+++||+++|+| .|+++++++++.++||+|++||
T Consensus 253 ~vs~g~~~~~~--~~-~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR 329 (361)
T cd04747 253 HCSTRRFWEPE--FE-GSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGR 329 (361)
T ss_pred EecCCCccCCC--cC-ccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhH
Confidence 8866532 221 22 236788888999999999999999 6999999999998899999999
Q ss_pred HHhhCCccchhhhhh
Q 013813 318 SLLENPALFAGFRTA 332 (436)
Q Consensus 318 gal~nP~lf~~i~~~ 332 (436)
+++.||||+.+++.+
T Consensus 330 ~~iadP~~~~k~~~g 344 (361)
T cd04747 330 ALLSDPAWVAKVREG 344 (361)
T ss_pred HHHhCcHHHHHHHcC
Confidence 999999999998754
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=225.29 Aligned_cols=256 Identities=17% Similarity=0.144 Sum_probs=178.7
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHH--HHHHhCCCcEEEccCCCCCcHHHHHHHH
Q 013813 46 LLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWA--HWTKLGRPKLIVAPMVDNSELPFRMLCR 123 (436)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lg~~~i~lAPM~gvtd~~fR~l~~ 123 (436)
||..++.| .+-+||.+++|.+.+......++...++|+ .++++...++ |..|.-.+ |.+..
T Consensus 1 dL~v~~~G------------l~l~nPv~~ASg~~~~~~e~~~~~~~~G~Gavv~ktit~~~~---~~~gn~~p--r~~~~ 63 (325)
T cd04739 1 DLSTTYLG------------LSLKNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQI---EREAQELD--RFLTY 63 (325)
T ss_pred CceEEECC------------EecCCCCEeCCcCCCCCHHHHHHHHHCCCcEEEecccchhhh---hhcCCCCC--ceEee
Confidence 46677888 899999999999998777777766666677 3344432210 01111110 11100
Q ss_pred --HhCCCeEEeCcccchhhccC--hhhhhh--hhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchh
Q 013813 124 --RYGAEAAYTPMLHSRIFTES--EKYRNE--EFATCKEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRI 196 (436)
Q Consensus 124 --~~Ga~l~~Temisa~~l~~~--~~~~~~--~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~ 196 (436)
.+.- ...|+++-.+.+. +.+... ... ...+.|+++||+|++++++.++++.++. |+|+||||++||..
T Consensus 64 ~~~~~~---~~~~in~~g~~n~g~~~~~~~i~~~~-~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~- 138 (325)
T cd04739 64 GSSFAE---ALSYFPEYGRYNLGPEEYLELIRRAK-RAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT- 138 (325)
T ss_pred cccCcC---cccccccccccCcCHHHHHHHHHHHH-hccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-
Confidence 1100 0112333333221 111111 011 1236899999999999999999998865 89999999999642
Q ss_pred hhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccccc----------
Q 013813 197 ARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------- 266 (436)
Q Consensus 197 ~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~---------- 266 (436)
..+.+|+.+ ++.+.++++++++.+++||+||++.. ..+..++++.++++|+|+|++|+|+....
T Consensus 139 -~~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~--~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~ 212 (325)
T cd04739 139 -DPDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPF--FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVP 212 (325)
T ss_pred -CCCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCC--ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceec
Confidence 234466544 57899999999999999999998764 45788999999999999999999873221
Q ss_pred -CCCCCc----cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 267 -DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 267 -~~~~g~----ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
.+.+|+ ..|++++++++.+++|||++|||.|.+|+.+++. .|||+|||||+++. +|.++.++.
T Consensus 213 ~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~ 281 (325)
T cd04739 213 NLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLL-AGADVVMTTSALLRHGPDYIGTLL 281 (325)
T ss_pred CCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHH-cCCCeeEEehhhhhcCchHHHHHH
Confidence 112222 2467888999888999999999999999999998 59999999999988 599887664
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=222.54 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHc-CCCcEEEEecCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC---
Q 013813 169 PEILLNAARRVE-PYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--- 235 (436)
Q Consensus 169 ~e~~~~AA~~v~-~g~D~IdLN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg--- 235 (436)
.++|++||+++. +|||+||||+|| |..|.|.|.||++|.++.+++.||+++|+++++.++.|++|++
T Consensus 149 i~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~ 228 (370)
T cd02929 149 RRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDE 228 (370)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHH
Confidence 368899997764 599999999998 9999999999999999999999999999999987777777764
Q ss_pred -------CChhhHHHHHHHHHHcCccEEEeccCcccc----cCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHH
Q 013813 236 -------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 236 -------~~~~d~~~~ak~le~aG~d~I~VHgRt~~~----~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~ 304 (436)
.+.++++++++.+++. +|+|.|+...... .........|++++.+|+.+++||+++|+|.++++++++
T Consensus 229 ~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~ 307 (370)
T cd02929 229 LIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEV 307 (370)
T ss_pred hcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 2356778899999876 7999887653211 011122356888899999999999999999999999999
Q ss_pred HHhcCcceeeeehHHhhCCccchhhhhhh
Q 013813 305 LEETGCEGVLSAESLLENPALFAGFRTAE 333 (436)
Q Consensus 305 l~~tGaDgVmIGRgal~nP~lf~~i~~~~ 333 (436)
++.++||+|++||+++.||||+.+++.+.
T Consensus 308 l~~g~~D~V~~gR~~ladP~l~~k~~~g~ 336 (370)
T cd02929 308 VKSGILDLIGAARPSIADPFLPKKIREGR 336 (370)
T ss_pred HHcCCCCeeeechHhhhCchHHHHHHcCC
Confidence 99988999999999999999999988653
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=237.23 Aligned_cols=228 Identities=18% Similarity=0.229 Sum_probs=173.1
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh--CCCeEEeCcccchhh---------ccChhh----hhhhhhccCC-CC
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY--GAEAAYTPMLHSRIF---------TESEKY----RNEEFATCKE-DR 158 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~--Ga~l~~Temisa~~l---------~~~~~~----~~~~~~~~~~-e~ 158 (436)
+|+|+++||.. .|+.....+.++. |+++++||.+....- ..+... +...-..+.. +.
T Consensus 411 ~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~ 490 (765)
T PRK08255 411 KNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDA 490 (765)
T ss_pred CCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHHHhcCCc
Confidence 78999999954 3555555554444 789999998654211 011111 1111123455 47
Q ss_pred CEEEEecC----------------------------C---------------------CHHHHHHHHHHH-cCCCcEEEE
Q 013813 159 PLFVQFCA----------------------------N---------------------DPEILLNAARRV-EPYCDYVDI 188 (436)
Q Consensus 159 plivQL~g----------------------------~---------------------d~e~~~~AA~~v-~~g~D~IdL 188 (436)
.+++||+- + -.++|++||+++ +.|||+|||
T Consensus 491 ~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgvei 570 (765)
T PRK08255 491 KIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAEAGFDWLEL 570 (765)
T ss_pred eEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 88889721 0 036888999765 569999999
Q ss_pred ecC---------CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc------CCChhhHHHHHHHHHHc
Q 013813 189 NLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 189 N~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl------g~~~~d~~~~ak~le~a 251 (436)
|+| ||..|.++|+||++|.++.+++.+|+++|++.+ ++||+|||+. |++.++++++++.++++
T Consensus 571 h~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~ 650 (765)
T PRK08255 571 HCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAA 650 (765)
T ss_pred ecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhc
Confidence 999 999999999999999999999999999999987 4899999996 34567889999999999
Q ss_pred CccEEEecc-CcccccCC-CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc-chh
Q 013813 252 GCSLLAVHG-RTRDEKDG-KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL-FAG 328 (436)
Q Consensus 252 G~d~I~VHg-Rt~~~~~~-~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l-f~~ 328 (436)
|+|+|+||+ ++...... +.......+.+++|+.+++||+++|+|.++++++++++.++||+||+||+++.||+| +..
T Consensus 651 g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~ 730 (765)
T PRK08255 651 GADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHE 730 (765)
T ss_pred CCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHH
Confidence 999999994 44321111 111234566788999999999999999999999999999899999999999999955 444
Q ss_pred h
Q 013813 329 F 329 (436)
Q Consensus 329 i 329 (436)
+
T Consensus 731 ~ 731 (765)
T PRK08255 731 A 731 (765)
T ss_pred H
Confidence 3
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=219.80 Aligned_cols=252 Identities=15% Similarity=0.112 Sum_probs=177.4
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHHH--HHHhCCCcEEEccCCCCCcHHHH----
Q 013813 46 LLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAH--WTKLGRPKLIVAPMVDNSELPFR---- 119 (436)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lg~~~i~lAPM~gvtd~~fR---- 119 (436)
||..++.| .+=+||++.+|.+.+......++..+++|+. .+++.. .|-.+....-||
T Consensus 2 ~l~~~~~G------------l~l~nPv~~asg~~~~~~~~~~~~~~~g~Gavv~kti~~-----~~~~~~~~~~~~~~~~ 64 (334)
T PRK07565 2 DLSTTYLG------------LTLRNPLVASASPLSESVDNVKRLEDAGAGAVVLKSLFE-----EQIRHEAAELDRHLTH 64 (334)
T ss_pred CceEEECC------------EecCCCCEecCcCCCCCHHHHHHHHHCCCeEEEEeeCCH-----HHhhcccccccccccc
Confidence 56777888 8889999999999886666666666677773 344432 222222222122
Q ss_pred ---HHHHHhCCCeEEeCcccchhhccCh--hhhhh--hhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecC
Q 013813 120 ---MLCRRYGAEAAYTPMLHSRIFTESE--KYRNE--EFATCKEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLG 191 (436)
Q Consensus 120 ---~l~~~~Ga~l~~Temisa~~l~~~~--~~~~~--~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~G 191 (436)
++.... .|+++..+.+.. ..... .+. ...+.|+++||+|.+++++.++++.++. |+|+||||++
T Consensus 65 ~~~~~~~~~-------~~~n~~gl~n~g~d~~~~~i~~~~-~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~s 136 (334)
T PRK07565 65 GTESFAEAL-------DYFPEPAKFYVGPEEYLELIRRAK-EAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIY 136 (334)
T ss_pred CCCcchhhh-------hhhhhhhccCcCHHHHHHHHHHHH-HhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 112211 134333332211 11111 111 1235899999999999999999988765 8999999999
Q ss_pred CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccccc-----
Q 013813 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----- 266 (436)
Q Consensus 192 CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~----- 266 (436)
||... .+..|.. .++.+.++++++++.+++||+||++.+ ..+..++++.++++|+|+|++|+|+....
T Consensus 137 cpp~~--~~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~--~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~ 209 (334)
T PRK07565 137 YLPTD--PDISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPY--FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLET 209 (334)
T ss_pred CCCCC--CCCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCC--chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhh
Confidence 97642 2333433 346688999999999999999998764 35678899999999999999999864321
Q ss_pred ------CCCCCc----cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhh
Q 013813 267 ------DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 330 (436)
Q Consensus 267 ------~~~~g~----ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~ 330 (436)
.+.+|+ ..|+.+.++++.+++|||++|||.|.+|+.+++. .|||+|||||+++.+ |.++.++.
T Consensus 210 ~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~-aGA~~V~v~t~~~~~g~~~~~~i~ 283 (334)
T PRK07565 210 LEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLL-AGADVVMIASALLRHGPDYIGTIL 283 (334)
T ss_pred cccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHH-cCCCceeeehHHhhhCcHHHHHHH
Confidence 112232 2367788899889999999999999999999998 699999999999985 88777654
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=205.85 Aligned_cols=231 Identities=22% Similarity=0.292 Sum_probs=178.9
Q ss_pred CCcEEEccCCCC--------CcHHHHHHHHHh--CCCeEEeCcccchh----hcc-----Chh----hhhhhhhccCCCC
Q 013813 102 RPKLIVAPMVDN--------SELPFRMLCRRY--GAEAAYTPMLHSRI----FTE-----SEK----YRNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~gv--------td~~fR~l~~~~--Ga~l~~Temisa~~----l~~-----~~~----~~~~~~~~~~~e~ 158 (436)
+|++++|||... |+...+.+.++. |++++.||...... ... +.. .++..-..+..+.
T Consensus 18 ~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~ 97 (363)
T COG1902 18 KNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHGA 97 (363)
T ss_pred ccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHHHHhcCC
Confidence 789999999863 557777777665 58999999654321 101 111 1112123567788
Q ss_pred CEEEEecCCC----------------------------------------HHHHHHHHHHH-cCCCcEEEEec-------
Q 013813 159 PLFVQFCAND----------------------------------------PEILLNAARRV-EPYCDYVDINL------- 190 (436)
Q Consensus 159 plivQL~g~d----------------------------------------~e~~~~AA~~v-~~g~D~IdLN~------- 190 (436)
++++||+... .++|++||+++ ++|||+||||.
T Consensus 98 ~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~ 177 (363)
T COG1902 98 KIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLS 177 (363)
T ss_pred eEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHH
Confidence 9999997433 27899999876 56999999994
Q ss_pred --CCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEecc-------CCChhhHHHHHHHHHHcC-ccEEEe
Q 013813 191 --GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV-------FPNLQDTIKYAKMLEDAG-CSLLAV 258 (436)
Q Consensus 191 --GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRl-------g~~~~d~~~~ak~le~aG-~d~I~V 258 (436)
-+|..|.|+|.||+++.++.+++.||+++|+++++ .||.+++.. |++.++..++++.|++.| +|+|++
T Consensus 178 qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~v 257 (363)
T COG1902 178 QFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHV 257 (363)
T ss_pred HhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEe
Confidence 49999999999999999999999999999999995 478888765 345668899999999999 799998
Q ss_pred ccCccc--ccCCCC-CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 259 HGRTRD--EKDGKK-FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 259 HgRt~~--~~~~~~-g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
.+.... +..... ..+.......++..+++|||++|+|.+++.++++++.++||.|.+||+++.||+|..+++.+
T Consensus 258 s~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g 334 (363)
T COG1902 258 SEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEG 334 (363)
T ss_pred ecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcC
Confidence 765442 111111 12344666778888899999999999999999999986699999999999999999998864
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=200.56 Aligned_cols=226 Identities=15% Similarity=0.163 Sum_probs=172.6
Q ss_pred CCcEEEccCCC---------CCcHHHHHHHHHhCCCeEEeCcccchh----hc-----cChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD---------NSELPFRMLCRRYGAEAAYTPMLHSRI----FT-----ESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g---------vtd~~fR~l~~~~Ga~l~~Temisa~~----l~-----~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. .|+..++.+.++.|+++++||.+.... .. .+.+. +...-..+..+.+
T Consensus 15 kNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~Ga~ 94 (362)
T PRK10605 15 PNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEGGH 94 (362)
T ss_pred ccccEECCcCcCccCCCCCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhCCCE
Confidence 78999999974 155677777777799999999876421 10 11111 1111134556777
Q ss_pred EEEEecCC------------------------------------------C------------HHHHHHHHHHHc-CCCc
Q 013813 160 LFVQFCAN------------------------------------------D------------PEILLNAARRVE-PYCD 184 (436)
Q Consensus 160 livQL~g~------------------------------------------d------------~e~~~~AA~~v~-~g~D 184 (436)
+++||+.. . .++|++||+++. +|||
T Consensus 95 i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfD 174 (362)
T PRK10605 95 IAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQAIANAREAGFD 174 (362)
T ss_pred EEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88887321 0 367889997764 6999
Q ss_pred EEEEecC---------CCchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEecc---------CCChhh-HHHH
Q 013813 185 YVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRV---------FPNLQD-TIKY 244 (436)
Q Consensus 185 ~IdLN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRl---------g~~~~d-~~~~ 244 (436)
+||||++ +|..|.|+|.||+++.++.+++.|||++|++.++- .|.+|+.. |.+.++ .+++
T Consensus 175 GVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~ 254 (362)
T PRK10605 175 LVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYL 254 (362)
T ss_pred EEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHH
Confidence 9999964 89999999999999999999999999999999852 47777642 235566 7999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.|++.|+|+|.|........ ......+.++||+.+++||+++|++ |++.++++++.+.||.|++||+++.||+
T Consensus 255 ~~~L~~~giD~i~vs~~~~~~~----~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd 329 (362)
T PRK10605 255 IEQLGKRGIAYLHMSEPDWAGG----EPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPD 329 (362)
T ss_pred HHHHHHcCCCEEEeccccccCC----ccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCcc
Confidence 9999999999999976422111 1233456688999999999999997 8999999999877999999999999999
Q ss_pred cchhhhhh
Q 013813 325 LFAGFRTA 332 (436)
Q Consensus 325 lf~~i~~~ 332 (436)
|..+++.+
T Consensus 330 ~~~k~~~g 337 (362)
T PRK10605 330 LVARLQRK 337 (362)
T ss_pred HHHHHhcC
Confidence 99998753
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=195.60 Aligned_cols=187 Identities=24% Similarity=0.209 Sum_probs=147.6
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
+.|+++|||.+.+ +..|++.|.++|...++++|.+. ..+. +.. ..+.|+++||++. +++.+.+
T Consensus 64 ~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~-----~~~~----i~~-~~~~~~~~ql~~~~~~~~~~~ 133 (299)
T cd02809 64 AMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT-----SLEE----VAA-AAPGPRWFQLYVPRDREITED 133 (299)
T ss_pred CCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC-----CHHH----HHH-hcCCCeEEEEeecCCHHHHHH
Confidence 4699999998875 67999999999999988887632 1111 111 1237999999987 8999999
Q ss_pred HHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 175 AARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 175 AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
+++.+++ |+|+|+||++||+...+ ...++++++++.+++||++|... ..+.++.++++|+
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v~------s~~~a~~a~~~G~ 194 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGIL------TPEDALRAVDAGA 194 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeecC------CHHHHHHHHHCCC
Confidence 9877654 89999999999984222 23467888888888999999642 2355888999999
Q ss_pred cEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 254 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 254 d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
|+|+||++...+ ...+...|..+.++++.+ ++|||++|||++..|+.++|. .|||+||+||.++
T Consensus 195 d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~-lGAd~V~ig~~~l 260 (299)
T cd02809 195 DGIVVSNHGGRQ--LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA-LGADAVLIGRPFL 260 (299)
T ss_pred CEEEEcCCCCCC--CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHHH
Confidence 999997765433 234578899999999877 599999999999999999998 5999999999443
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-22 Score=202.01 Aligned_cols=231 Identities=24% Similarity=0.308 Sum_probs=163.0
Q ss_pred CCcEEEccCCC--------CCc-HHHHHHHHHh--CCCeEEeCcccchhhc---------cChhh----hhhhhhccCCC
Q 013813 102 RPKLIVAPMVD--------NSE-LPFRMLCRRY--GAEAAYTPMLHSRIFT---------ESEKY----RNEEFATCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd-~~fR~l~~~~--Ga~l~~Temisa~~l~---------~~~~~----~~~~~~~~~~e 157 (436)
+|+|++|||.. +++ ...+.+.++. |++++.||.+....-. .+... ++..-..+..+
T Consensus 14 kNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~G 93 (341)
T PF00724_consen 14 KNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAHG 93 (341)
T ss_dssp SSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhcC
Confidence 78999999974 233 4444454433 7899999987643211 11111 11111245567
Q ss_pred CCEEEEecCCC-------------------------------------------HHHHHHHHHHH-cCCCcEEEEecC--
Q 013813 158 RPLFVQFCAND-------------------------------------------PEILLNAARRV-EPYCDYVDINLG-- 191 (436)
Q Consensus 158 ~plivQL~g~d-------------------------------------------~e~~~~AA~~v-~~g~D~IdLN~G-- 191 (436)
..+++||+... .++|++||+++ ++|||+||||++
T Consensus 94 a~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahG 173 (341)
T PF00724_consen 94 AKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHG 173 (341)
T ss_dssp SEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTT
T ss_pred ccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccCeEeecccch
Confidence 78888886311 37889999776 569999999965
Q ss_pred -------CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCC------ChhhHHHHHHHHHHcCccEE
Q 013813 192 -------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFP------NLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 192 -------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~------~~~d~~~~ak~le~aG~d~I 256 (436)
+|..|.|+|.||+++.++.+++.|||++|++.+ +.||.+|+.... +.++..++++.+++.|+|.+
T Consensus 174 yLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~ 253 (341)
T PF00724_consen 174 YLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFL 253 (341)
T ss_dssp SHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTE
T ss_pred hhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhc
Confidence 899999999999999999999999999999998 477888876532 34677888999999999988
Q ss_pred EeccCcc----c--c--cCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 257 AVHGRTR----D--E--KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 257 ~VHgRt~----~--~--~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
.+..... . . ...............+++.+++||+++|+|.+++.++++++.+.||.|.+||+++.||+|..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k 333 (341)
T PF00724_consen 254 DVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNK 333 (341)
T ss_dssp EEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHH
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHH
Confidence 6532111 0 0 011111234577889999999999999999999999999999889999999999999999999
Q ss_pred hhhh
Q 013813 329 FRTA 332 (436)
Q Consensus 329 i~~~ 332 (436)
++.+
T Consensus 334 ~~~g 337 (341)
T PF00724_consen 334 AREG 337 (341)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 8864
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-22 Score=201.54 Aligned_cols=174 Identities=18% Similarity=0.237 Sum_probs=144.7
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecC--CCHHHHHHHHHH
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCA--NDPEILLNAARR 178 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g--~d~e~~~~AA~~ 178 (436)
+.|+++|||+++||.+||.+|+++|+ ++ |+++.+.+.. +...|+.+||+| ++++. ++|++.
T Consensus 44 ~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~----------~~~~~~~~QI~g~~~~~~~-a~aa~~ 107 (369)
T TIGR01304 44 ELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRH----------EDPDPAIAKIAEAYEEGDQ-AAATRL 107 (369)
T ss_pred CCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcC----------CCHHHHHHHHhhcCCChHH-HHHHHH
Confidence 56999999999999999999999999 66 7766654321 223456699999 67777 888888
Q ss_pred HcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 179 VEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 179 v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
+++ +++. .+|+++.++++++++.. |+||+|+++ .+..++++.++++|+|.|+
T Consensus 108 ~~e~~~~~----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~--~~~~e~a~~l~eAGad~I~ 160 (369)
T TIGR01304 108 LQELHAAP----------------------LKPELLGERIAEVRDSG---VITAVRVSP--QNAREIAPIVVKAGADLLV 160 (369)
T ss_pred HHHcCCCc----------------------cChHHHHHHHHHHHhcc---eEEEEecCC--cCHHHHHHHHHHCCCCEEE
Confidence 865 5554 37999999999999873 999999954 5778999999999999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+|||+.++.+. ++..+|..+.++++..++|||+ |+|.|.+++.++++ +|||+||+|++.-.
T Consensus 161 ihgrt~~q~~~-sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~-aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 161 IQGTLVSAEHV-STSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMR-TGAAGVIVGPGGAN 221 (369)
T ss_pred Eeccchhhhcc-CCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCCCEEEECCCCCc
Confidence 99999887652 2356899899999989999998 99999999999998 69999999987743
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=197.04 Aligned_cols=257 Identities=14% Similarity=0.124 Sum_probs=168.4
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHHHH--HHhCCCcEEEccCCCCCcHHHHHHHH
Q 013813 46 LLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAHW--TKLGRPKLIVAPMVDNSELPFRMLCR 123 (436)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lg~~~i~lAPM~gvtd~~fR~l~~ 123 (436)
||.+++.| ..=+||..++|.+.+......++-...+|++. +++... |-.|...+ ++++
T Consensus 1 dL~~~~~G------------l~l~NPv~~AsG~~~~~~e~~~~~~~~g~Gavv~ktit~~-----p~~gn~~p---r~~~ 60 (310)
T PRK02506 1 STSTQIAG------------FKFDNCLMNAAGVYCMTKEELEEVEASAAGAFVTKSATLE-----PRPGNPEP---RYAD 60 (310)
T ss_pred CCceEECC------------EECCCCCEeCCCCCCCCHHHHHHHHHcCCcEEEeCccCCC-----CCCCCCCC---eEEE
Confidence 45666777 77889999998887644445555445556643 443322 33333322 1121
Q ss_pred HhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-C-CcEEEEecCCCchhhhcCc
Q 013813 124 RYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGN 201 (436)
Q Consensus 124 ~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g-~D~IdLN~GCP~~~~~~~~ 201 (436)
....++.+.-++...+....+.... +.....+.|+|+||.|.+++++.+.|+.++. + +|+||||++||+.. +
T Consensus 61 -~~~~~~N~~Gl~n~g~~~~~~~i~~-~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~---~- 134 (310)
T PRK02506 61 -TPLGSINSMGLPNLGFDYYLDYVLE-LQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP---G- 134 (310)
T ss_pred -CcchhhccCCCCCcCHHHHHHHHHH-HHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC---C-
Confidence 1111222222222111111111111 1222236899999999999999999998875 5 89999999999842 1
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccC-------------ccc----
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR-------------TRD---- 264 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgR-------------t~~---- 264 (436)
|..+..+++.+.++++++++.+.+||.||+....+..+..+.+..+.+.|++.|+...+ ...
T Consensus 135 -~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~ 213 (310)
T PRK02506 135 -KPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKN 213 (310)
T ss_pred -ccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCC
Confidence 44556789999999999999999999999877554444444455555667777644321 110
Q ss_pred ccCCCCCc----cCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 265 EKDGKKFR----ADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 265 ~~~~~~g~----ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
...+.+|+ ..+..+.++++.+ ++|||++|||.|.+|+.+++.. ||++||+|++++. +|.+|.++.
T Consensus 214 ~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~a-GA~~Vqv~ta~~~~gp~~~~~i~ 285 (310)
T PRK02506 214 GFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILC-GASMVQVGTALHKEGPAVFERLT 285 (310)
T ss_pred CCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHc-CCCHHhhhHHHHHhChHHHHHHH
Confidence 01122333 3467778888877 6999999999999999999986 9999999999887 799998765
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=194.79 Aligned_cols=168 Identities=23% Similarity=0.327 Sum_probs=142.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-C-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~-g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
.+.+++....+...+++.+.+..++. + +|+|+||++||+.. + |..|.++++.+.++++++++.+.+||.||+-
T Consensus 95 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~----g-~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~ 169 (310)
T COG0167 95 IGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP----G-GRALGQDPELLEKLLEAVKAATKVPVFVKLA 169 (310)
T ss_pred cCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC----C-hhhhccCHHHHHHHHHHHHhcccCceEEEeC
Confidence 45679999999999999999988865 5 79999999999942 2 7788889999999999999999999999954
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcc---------------cccCCCCCc----cCHHHHHHHHhhCC--CcEEEc
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTR---------------DEKDGKKFR----ADWNAIKAVKNALR--IPVLAN 292 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~---------------~~~~~~~g~----ad~~~i~~ik~~~~--iPVian 292 (436)
++.++..++|+.++++|+|+|++..-+. .+..+.+|+ ..+++|+++++.++ +|||+.
T Consensus 170 --P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGv 247 (310)
T COG0167 170 --PNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGV 247 (310)
T ss_pred --CCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEe
Confidence 4888999999999999999998865222 112334443 36788999999976 999999
Q ss_pred cCCCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhhh
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFRT 331 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~~ 331 (436)
|||.|++||.+++.. ||+.|+||++++.+ |++|.++..
T Consensus 248 GGI~s~~DA~E~i~a-GA~~vQv~Tal~~~Gp~i~~~I~~ 286 (310)
T COG0167 248 GGIETGEDALEFILA-GASAVQVGTALIYKGPGIVKEIIK 286 (310)
T ss_pred cCcCcHHHHHHHHHc-CCchheeeeeeeeeCchHHHHHHH
Confidence 999999999999997 99999999999888 999987753
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=189.97 Aligned_cols=169 Identities=19% Similarity=0.266 Sum_probs=140.5
Q ss_pred CCCCCEEEEecCC-------CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--
Q 013813 155 KEDRPLFVQFCAN-------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-- 225 (436)
Q Consensus 155 ~~e~plivQL~g~-------d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-- 225 (436)
..+.|++|+++++ ..+++++.++.+.+++|+||||++||+.. |...+++++.+.+++++|++.++
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~~~ 205 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQDGL 205 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhh
Confidence 4568999999888 57999999998888899999999999852 34456889999999999998876
Q ss_pred -----ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc-----------ccCCCCCc----cCHHHHHHHHhhC
Q 013813 226 -----VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-----------EKDGKKFR----ADWNAIKAVKNAL 285 (436)
Q Consensus 226 -----iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~-----------~~~~~~g~----ad~~~i~~ik~~~ 285 (436)
+||.||+....+.++..++++.++++|+|+|++..++.+ ...+.+|+ ..+..+..+++.+
T Consensus 206 ~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~ 285 (335)
T TIGR01036 206 RRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAEL 285 (335)
T ss_pred hhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHh
Confidence 999999776666568899999999999999998765431 12233443 2467788888877
Q ss_pred --CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 286 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 286 --~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
++|||+.|||.|.+|+.+++.. |||.|++|++++. +|.++.++.
T Consensus 286 ~~~ipiig~GGI~~~~da~e~l~a-GA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 286 QGRLPIIGVGGISSAQDALEKIRA-GASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHc-CCcHHHhhHHHHHhCchHHHHHH
Confidence 6999999999999999999996 9999999999977 599998875
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=185.39 Aligned_cols=230 Identities=13% Similarity=0.143 Sum_probs=164.2
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh-CCCeEEeCcccchh----hcc-----Chhh----hhhhhhccCCCCCE
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY-GAEAAYTPMLHSRI----FTE-----SEKY----RNEEFATCKEDRPL 160 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~-Ga~l~~Temisa~~----l~~-----~~~~----~~~~~~~~~~e~pl 160 (436)
+|+|++|||.. +|+.....+.++. |.++++||.+.... +.. +.+. ++..-..+..+..+
T Consensus 24 kNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~G~~i 103 (391)
T PLN02411 24 SHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAKGSII 103 (391)
T ss_pred cccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 78999999964 3666666666554 45999999865421 111 1111 11111344566677
Q ss_pred EEEecC----------------------------------------CC------------HHHHHHHHHHH-cCCCcEEE
Q 013813 161 FVQFCA----------------------------------------ND------------PEILLNAARRV-EPYCDYVD 187 (436)
Q Consensus 161 ivQL~g----------------------------------------~d------------~e~~~~AA~~v-~~g~D~Id 187 (436)
++||+. .. .++|++||+++ ++|||+||
T Consensus 104 ~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDGVE 183 (391)
T PLN02411 104 FCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQAALNAIRAGFDGIE 183 (391)
T ss_pred EEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 777631 01 36889999776 56999999
Q ss_pred EecC---------CCchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccCC---------ChhhHHHHHHHH
Q 013813 188 INLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVFP---------NLQDTIKYAKML 248 (436)
Q Consensus 188 LN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg~---------~~~d~~~~ak~l 248 (436)
||++ +|..|.|+|.||+++.++.+++.||+++|+++++- .|.||+.... ..++..++++.+
T Consensus 184 IH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l 263 (391)
T PLN02411 184 IHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERL 263 (391)
T ss_pred EccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHH
Confidence 9964 89999999999999999999999999999999853 4677765311 124466778887
Q ss_pred HHc------CccEEEeccCccccc---CC-CCC-ccC-HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 249 EDA------GCSLLAVHGRTRDEK---DG-KKF-RAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 249 e~a------G~d~I~VHgRt~~~~---~~-~~g-~ad-~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++. |+|+|.|........ .. ..+ ... ..+.+.+|+.+++||+++|+| +.++++++++.+.||.|.+|
T Consensus 264 ~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~g 342 (391)
T PLN02411 264 NKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQGDADLVSYG 342 (391)
T ss_pred HHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEEEC
Confidence 763 599999975432110 00 001 111 245688999999999999999 57999999998679999999
Q ss_pred hHHhhCCccchhhhhh
Q 013813 317 ESLLENPALFAGFRTA 332 (436)
Q Consensus 317 Rgal~nP~lf~~i~~~ 332 (436)
|+++.||+|..+++.+
T Consensus 343 R~~iadPdl~~k~~~g 358 (391)
T PLN02411 343 RLFISNPDLVLRFKLN 358 (391)
T ss_pred HHHHhCccHHHHHhcC
Confidence 9999999999998764
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-20 Score=187.26 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=132.9
Q ss_pred CCCEEEEecCCC---HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 157 DRPLFVQFCAND---PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d---~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
..|+++++.|.+ .+++.+.++.+++++|+||||++||+.. .+..+.++++...++++.+++..++||.||+.
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~ 170 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAVDIPVFVKLS 170 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhccCCCEEEEec
Confidence 679999999999 9999999998889999999999999853 34566778999999999999988999999976
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCccc----------c-----cCCCCCc----cCHHHHHHHHhhCC--CcEEEc
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD----------E-----KDGKKFR----ADWNAIKAVKNALR--IPVLAN 292 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~----------~-----~~~~~g~----ad~~~i~~ik~~~~--iPVian 292 (436)
...+.......+..+.+.|+++|++..++.. . ..+.+|+ ..+..++++++.++ +|||++
T Consensus 171 p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~ 250 (295)
T PF01180_consen 171 PNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGV 250 (295)
T ss_dssp STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEe
Confidence 6444444456677777999999985433210 1 1112333 35677889999887 999999
Q ss_pred cCCCCHHHHHHHHHhcCcceeeeehHH-hhCCccchhhhh
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 331 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIGRga-l~nP~lf~~i~~ 331 (436)
|||.|++|+.+++.. ||+.|++++++ +.+|+++.++..
T Consensus 251 GGI~s~~da~e~l~a-GA~~Vqv~Sal~~~Gp~~~~~i~~ 289 (295)
T PF01180_consen 251 GGIHSGEDAIEFLMA-GASAVQVCSALIYRGPGVIRRINR 289 (295)
T ss_dssp SS--SHHHHHHHHHH-TESEEEESHHHHHHGTTHHHHHHH
T ss_pred CCcCCHHHHHHHHHh-CCCHheechhhhhcCcHHHHHHHH
Confidence 999999999999997 99999999999 779999998764
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=176.58 Aligned_cols=166 Identities=22% Similarity=0.245 Sum_probs=136.1
Q ss_pred CCEEEEecCC-----CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc---------
Q 013813 158 RPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--------- 223 (436)
Q Consensus 158 ~plivQL~g~-----d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~--------- 223 (436)
.|++|+|+++ ..++|.+.++.+.+++|+|+||.+||+.. |-..+++++.+.++++++++.
T Consensus 187 ~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~ 260 (409)
T PLN02826 187 GILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP------GLRKLQGRKQLKDLLKKVLAARDEMQWGEE 260 (409)
T ss_pred ceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC------CcccccChHHHHHHHHHHHHHHHHhhhccc
Confidence 4899999888 58999999999988899999999999962 334467889999999988643
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc------------ccCCCCCcc----CHHHHHHHHhhC--
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------EKDGKKFRA----DWNAIKAVKNAL-- 285 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~------------~~~~~~g~a----d~~~i~~ik~~~-- 285 (436)
..+||.||+....+.++..++++.+.++|+|+|++...+.. +..+.+|++ .++.++++++.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 46899999766556668899999999999999999764421 122344443 467888898887
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
++|||+.|||.|.+|+.+++.. ||+.|+++++++. .|+++.++.
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~A-GAs~VQv~Ta~~~~Gp~~i~~I~ 385 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRA-GASLVQLYTAFAYEGPALIPRIK 385 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHh-CCCeeeecHHHHhcCHHHHHHHH
Confidence 7999999999999999999997 9999999999877 588887664
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-18 Score=170.28 Aligned_cols=207 Identities=23% Similarity=0.278 Sum_probs=147.3
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhh--hhhhccCCCCCEEEEecCC-----C
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRN--EEFATCKEDRPLFVQFCAN-----D 168 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~--~~~~~~~~e~plivQL~g~-----d 168 (436)
+.|+++|||+|.+ +..+-..|+++|....+... +....+..... ..++....+.|++++|++. +
T Consensus 53 ~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~---~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~ 129 (333)
T TIGR02151 53 KAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQ---RAALKDPETADTFEVVREEAPNGPLIANIGAPQLVEGG 129 (333)
T ss_pred cCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCc---hhhccChhhHhHHHHHHHhCCCCcEEeecCchhhcccc
Confidence 6699999999999 55555589999987766542 11122222211 1233335789999988763 3
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHH
Q 013813 169 PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML 248 (436)
Q Consensus 169 ~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~l 248 (436)
++++.++++.+ ++|+++||++|++......++. +.+.+.+.++++++.+++||.||.. |. ....+.++.+
T Consensus 130 ~~~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPVivK~~-g~--g~~~~~a~~L 199 (333)
T TIGR02151 130 PEEAQEAIDMI--EADALAIHLNVLQELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIVKEV-GF--GISKEVAKLL 199 (333)
T ss_pred HHHHHHHHHHh--cCCCEEEcCcccccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEEEec-CC--CCCHHHHHHH
Confidence 45566666655 5789999999999766555443 2355778899999988999999964 32 2356889999
Q ss_pred HHcCccEEEeccCccccc---------CC--CCCccCH-----HHHHHHHh-hCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 249 EDAGCSLLAVHGRTRDEK---------DG--KKFRADW-----NAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~---------~~--~~g~ad~-----~~i~~ik~-~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+++|+|+|+|+|+..... .. .....+| +.+.++++ .+++|||++|||.+..|+.++|.. |||
T Consensus 200 ~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLal-GAd 278 (333)
T TIGR02151 200 ADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIAL-GAD 278 (333)
T ss_pred HHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHh-CCC
Confidence 999999999998743210 00 0112345 45666666 568999999999999999999996 899
Q ss_pred eeeeehHHhhC
Q 013813 312 GVLSAESLLEN 322 (436)
Q Consensus 312 gVmIGRgal~n 322 (436)
+|++||++|..
T Consensus 279 ~V~igr~~L~~ 289 (333)
T TIGR02151 279 AVGMARPFLKA 289 (333)
T ss_pred eehhhHHHHHH
Confidence 99999998853
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=167.60 Aligned_cols=206 Identities=19% Similarity=0.211 Sum_probs=148.1
Q ss_pred CCcEEEccCCCCCcHHHHH------HHHHhCCCeEEeCcccchhhccChhhhh--hhhhccCCCCCEEEEecCC-----C
Q 013813 102 RPKLIVAPMVDNSELPFRM------LCRRYGAEAAYTPMLHSRIFTESEKYRN--EEFATCKEDRPLFVQFCAN-----D 168 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~------l~~~~Ga~l~~Temisa~~l~~~~~~~~--~~~~~~~~e~plivQL~g~-----d 168 (436)
+.|+++|||+|.+...++. .|+++|....+..+- ....+..... ..++...++.|++++|++. +
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~---~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~ 136 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQR---AALKDPELADSFSVVRKVAPDGLLFANLGAVQLYGYG 136 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccH---hhccChhhHHHHHHHHHHCCCceEEeecCccccCCCC
Confidence 5699999999999855544 888888887777662 1112222111 1123334589999977664 4
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHH
Q 013813 169 PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML 248 (436)
Q Consensus 169 ~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~l 248 (436)
++.+.++++.+ ++|+++||++|++......++ .+.+.+.+.++++++.+++||.||..- . ..+.+.|+.+
T Consensus 137 ~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g-~--g~s~~~a~~l 206 (352)
T PRK05437 137 VEEAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEVG-F--GISKETAKRL 206 (352)
T ss_pred HHHHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeCC-C--CCcHHHHHHH
Confidence 57777777666 579999999999875554432 355667789999999999999999763 2 2335788999
Q ss_pred HHcCccEEEeccCcccc-------cC----CCCCccC-----HHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 249 EDAGCSLLAVHGRTRDE-------KD----GKKFRAD-----WNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~-------~~----~~~g~ad-----~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+++|+|+|+|+|+.... +. ......+ ...+.++++. .++|||++|||.+..|+.+++.. |||
T Consensus 207 ~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~-GAd 285 (352)
T PRK05437 207 ADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALAL-GAD 285 (352)
T ss_pred HHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHc-CCC
Confidence 99999999998864210 10 0001122 3467777777 58999999999999999999997 999
Q ss_pred eeeeehHHhh
Q 013813 312 GVLSAESLLE 321 (436)
Q Consensus 312 gVmIGRgal~ 321 (436)
+|++||++|.
T Consensus 286 ~v~ig~~~l~ 295 (352)
T PRK05437 286 AVGMAGPFLK 295 (352)
T ss_pred EEEEhHHHHH
Confidence 9999999986
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-16 Score=155.85 Aligned_cols=207 Identities=23% Similarity=0.286 Sum_probs=141.9
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccCh-hhhhhhhhccCCCCCEEEEecCC-----CH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESE-KYRNEEFATCKEDRPLFVQFCAN-----DP 169 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~-~~~~~~~~~~~~e~plivQL~g~-----d~ 169 (436)
+.||++|||.|.+ +..+-..+++.|.....-.. ++ .+...+ ......++...++.|++++++.. ++
T Consensus 52 ~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~-~~-~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~ 129 (326)
T cd02811 52 SAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQ-RA-ALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGV 129 (326)
T ss_pred cCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCc-hh-hccChhhhhHHHHHHHhCCCceEEeecCccccCCCCH
Confidence 6799999999998 67777777777743322211 11 111100 01111223345678988888764 56
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE 249 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le 249 (436)
+.+.++++.+ ++|+++||++|++......++ .+.+.+.+.++.+++.+++||.||..-. ..+.+.++.++
T Consensus 130 ~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPVivK~~g~---g~s~~~a~~l~ 199 (326)
T cd02811 130 EEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVKEVGF---GISRETAKRLA 199 (326)
T ss_pred HHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEEecCC---CCCHHHHHHHH
Confidence 7777776666 579999999998864444432 3455677888999998999999997432 23357789999
Q ss_pred HcCccEEEeccCcccc-------cCCC------CCccCH-----HHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 250 DAGCSLLAVHGRTRDE-------KDGK------KFRADW-----NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~-------~~~~------~g~ad~-----~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGa 310 (436)
++|+|+|+|+|+-... +... ....+| ..+.++++.+ ++|||++|||++..|+.+++.. ||
T Consensus 200 ~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~l-GA 278 (326)
T cd02811 200 DAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKALAL-GA 278 (326)
T ss_pred HcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHh-CC
Confidence 9999999998751100 0000 001233 4567777776 8999999999999999999997 89
Q ss_pred ceeeeehHHhh
Q 013813 311 EGVLSAESLLE 321 (436)
Q Consensus 311 DgVmIGRgal~ 321 (436)
|+|++||++|.
T Consensus 279 d~V~i~~~~L~ 289 (326)
T cd02811 279 DLVGMAGPFLK 289 (326)
T ss_pred CEEEEcHHHHH
Confidence 99999999874
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-16 Score=147.19 Aligned_cols=190 Identities=20% Similarity=0.260 Sum_probs=135.1
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCH-HHHHHHHHH-
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDP-EILLNAARR- 178 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~-e~~~~AA~~- 178 (436)
+.|+++|||.|+|+..|+..+.++|+ +++.+++++...+.+..+..... .+.|+.++++.+++ +...+-++.
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~-----~~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRAL-----TDKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHh-----cCCCeEEeEecCCCCcCHHHHHHHH
Confidence 46899999999999999999999986 77778888765543322211111 14688899999874 233344433
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
.+.|+|+|.||.+++. ++++.+++ .++++.+++. + .+.++.+.+.|+|+|.+
T Consensus 77 ~~~g~d~v~l~~~~~~--------------------~~~~~~~~-~~i~~i~~v~---~----~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 77 LEEGVPVVSFSFGPPA--------------------EVVERLKA-AGIKVIPTVT---S----VEEARKAEAAGADALVA 128 (236)
T ss_pred HhCCCCEEEEcCCCCH--------------------HHHHHHHH-cCCEEEEeCC---C----HHHHHHHHHcCCCEEEE
Confidence 4568999999876332 22333332 3678777742 1 24466677899999999
Q ss_pred ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 259 HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 259 HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+++.............++.++++++.+++||+++|||.+++++.++++. |+|+|++|++++..+..
T Consensus 129 ~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~-GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 129 QGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALAL-GADGVQMGTRFLATEES 194 (236)
T ss_pred eCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHc-CCcEEEEchhhhcCccc
Confidence 8874322111111245889999999889999999999999999999984 99999999999887754
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=162.82 Aligned_cols=169 Identities=17% Similarity=0.240 Sum_probs=131.2
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
+.|+++|||.++|+.+||..+.++|+ +++..+-+. .......++..||++.++ .++++.++
T Consensus 47 ~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~---------------~~~~~~e~l~~qi~~~~~---~~~~~~~~ 108 (368)
T PRK08649 47 EIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW---------------TRYEDPEPILDEIASLGK---DEATRLMQ 108 (368)
T ss_pred cCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc---------------ccCCCHHHHHHHHHhcCc---HHHHHHHH
Confidence 56999999999999999999999998 777744442 111223456667777766 34444444
Q ss_pred C-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 181 P-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 181 ~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
. +.+ | .+|+++.++++++++. + |+||+|+. ..+..++++.+.++|+|.|++|
T Consensus 109 ~~~~~--------P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~~--~~~~~e~a~~l~eaGvd~I~vh 161 (368)
T PRK08649 109 ELYAE--------P--------------IKPELITERIAEIRDA-G--VIVAVSLS--PQRAQELAPTVVEAGVDLFVIQ 161 (368)
T ss_pred HhhcC--------C--------------CCHHHHHHHHHHHHhC-e--EEEEEecC--CcCHHHHHHHHHHCCCCEEEEe
Confidence 3 222 2 4699999999999986 3 66677673 3567789999999999999999
Q ss_pred cCcccccCCCCCcc-CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 260 GRTRDEKDGKKFRA-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 260 gRt~~~~~~~~g~a-d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
+||.++.+.. .. +|..+.++++..++|||+ |+|.|.++++++++ .|||+||+|+|-
T Consensus 162 grt~~~~h~~--~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~-aGAD~V~VG~G~ 218 (368)
T PRK08649 162 GTVVSAEHVS--KEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMR-TGAAGVLVGIGP 218 (368)
T ss_pred ccchhhhccC--CcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 9999876543 33 788888888888999999 99999999999998 699999999874
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=133.18 Aligned_cols=193 Identities=19% Similarity=0.187 Sum_probs=135.3
Q ss_pred EEEccCCCCC---cHHHHHHHHHhCCCeEEeCcccchhhccChhh-hhhhhhccCCCCCEEEEecCCCHHHHHHH-HHH-
Q 013813 105 LIVAPMVDNS---ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKY-RNEEFATCKEDRPLFVQFCANDPEILLNA-ARR- 178 (436)
Q Consensus 105 i~lAPM~gvt---d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~-~~~~~~~~~~e~plivQL~g~d~e~~~~A-A~~- 178 (436)
+++++|.+-. ...+.+.+.+.|++++.++............. ..........+.|+++|++.+++.+.... ++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 4678899875 33444455566888887777654432221111 00111223457899999999988776542 333
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
.+.|+|+|+||.+|+.. ++...++++++++.+ ++++.+|++........ .+.+.|+++|.
T Consensus 81 ~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-----~~~~~g~d~i~ 141 (200)
T cd04722 81 RAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAAA-----AAEEAGVDEVG 141 (200)
T ss_pred HHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-----hHHHcCCCEEE
Confidence 45699999999999864 788899999999887 89999998875432221 16789999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
++++...+............+..+++..++||+++|||.+++++.++++. |||+|++||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~-Gad~v~vgs 200 (200)
T cd04722 142 LGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALAL-GADGVIVGS 200 (200)
T ss_pred EcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHh-CCCEEEecC
Confidence 99887654322111111244566667789999999999999999999997 999999997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=146.75 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=118.5
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccE---EEEeccC
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPV---SCKIRVF 235 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPV---sVKiRlg 235 (436)
-+|++|. ...+.++.+++..|++.+ ..|++++++|+++.++++.+.+.+ ++++ .+|++ |
T Consensus 77 pv~vgGG-irs~edv~~~l~~Ga~kv--------------viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-G 140 (241)
T PRK14024 77 KVELSGG-IRDDESLEAALATGCARV--------------NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-G 140 (241)
T ss_pred CEEEcCC-CCCHHHHHHHHHCCCCEE--------------EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-C
Confidence 3676653 333445555566677643 257899999999999999987665 3455 56653 6
Q ss_pred CC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH--hcCcc
Q 013813 236 PN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE--ETGCE 311 (436)
Q Consensus 236 ~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~--~tGaD 311 (436)
|. ..+..++++.+++.|++.|++|+|++++++. | +||+.++++++.+++|||+||||.|.+|+.++++ .+|||
T Consensus 141 w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~--G-~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~Gvd 217 (241)
T PRK14024 141 WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLT--G-PNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVE 217 (241)
T ss_pred eeecCccHHHHHHHHHhcCCCEEEEEeecCCCCcc--C-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCcc
Confidence 53 3466899999999999999999999997643 3 5999999999999999999999999999999864 36999
Q ss_pred eeeeehHHhhCCccchhh
Q 013813 312 GVLSAESLLENPALFAGF 329 (436)
Q Consensus 312 gVmIGRgal~nP~lf~~i 329 (436)
|||+||+++.++--+.++
T Consensus 218 gV~igra~~~g~~~~~~~ 235 (241)
T PRK14024 218 GAIVGKALYAGAFTLPEA 235 (241)
T ss_pred EEEEeHHHHcCCCCHHHH
Confidence 999999999988655543
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=148.52 Aligned_cols=140 Identities=22% Similarity=0.322 Sum_probs=105.7
Q ss_pred HHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHc
Q 013813 173 LNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 173 ~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~a 251 (436)
.++|+++++ |++.|.+|.|||+..+.+| |.++|++|+.+. ++++.+++||+.|+|.|. ..-++.|+++
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~Ea~~L~~~ 95 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FVEAQILEAL 95 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HHHHHHHHHc
Confidence 456777766 8999999999999988777 999999999988 556667999999999863 2224445555
Q ss_pred CccEEEe---------------------------------------------c--------------------------c
Q 013813 252 GCSLLAV---------------------------------------------H--------------------------G 260 (436)
Q Consensus 252 G~d~I~V---------------------------------------------H--------------------------g 260 (436)
|+|.|.- + |
T Consensus 96 GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~g 175 (293)
T PRK04180 96 GVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTS 175 (293)
T ss_pred CCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 5555532 1 1
Q ss_pred CcccccCC--CCCccCHHHHHHHHhhCCCcEE--EccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 261 RTRDEKDG--KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 261 Rt~~~~~~--~~g~ad~~~i~~ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.|.+.... ....++|+.++++++..++||+ +.|||.|++++..+++. |||+|++|++++..+.
T Consensus 176 yt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~-GAdgVaVGSaI~ks~d 242 (293)
T PRK04180 176 MSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQL-GADGVFVGSGIFKSGD 242 (293)
T ss_pred CCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHh-CCCEEEEcHHhhcCCC
Confidence 11111000 1124689999999999999998 99999999999999985 9999999999985443
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=145.83 Aligned_cols=192 Identities=18% Similarity=0.179 Sum_probs=136.5
Q ss_pred HHhC-CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 98 TKLG-RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 98 ~~lg-~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
+.+| +.||++|||.++|+..|-..+.+.|+ +.+-....+...+...... ++. ..++|+.++++...+..-...
T Consensus 6 ~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~----~~~-~t~~pfgvn~~~~~~~~~~~~ 80 (307)
T TIGR03151 6 DLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRK----VKE-LTDKPFGVNIMLLSPFVDELV 80 (307)
T ss_pred HHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHH----HHH-hcCCCcEEeeecCCCCHHHHH
Confidence 4455 68999999999999999888888876 4333333332222211111 111 236899999987655432222
Q ss_pred HHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 176 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 176 A~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
...++.+++.|.+++|.|. ++++.+++. ++.|...+. ..+.++.++++|+|.
T Consensus 81 ~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~-------s~~~a~~a~~~GaD~ 132 (307)
T TIGR03151 81 DLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVA-------SVALAKRMEKAGADA 132 (307)
T ss_pred HHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcC-------CHHHHHHHHHcCCCE
Confidence 2345678999998776552 355666554 677776642 245688899999999
Q ss_pred EEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 256 LAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 256 I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
|++||+...+..+ ...+|.++.++++.+++|||++|||.+.+++.+++. .|||+|++|+.++.-++-
T Consensus 133 Ivv~g~eagGh~g--~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~-~GA~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 133 VIAEGMESGGHIG--ELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFA-LGAEAVQMGTRFLCAKEC 199 (307)
T ss_pred EEEECcccCCCCC--CCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-cCCCEeecchHHhccccc
Confidence 9999996654322 134799999999999999999999999999999998 599999999998876654
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.9e-15 Score=143.02 Aligned_cols=143 Identities=20% Similarity=0.278 Sum_probs=117.7
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC------
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF------ 235 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg------ 235 (436)
+|+.| +...+.++.+++..|++.|.|| ++++.+|+++.++++.+.+. .+++++++|.+
T Consensus 77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~ 140 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFD 140 (258)
T ss_pred EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEE
Confidence 56655 6666667777777799999988 45678999999999988533 26778887765
Q ss_pred -----C---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 236 -----P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 236 -----~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
| ...+..++++.+++.|++.|++|++++++.+. | +||+.++++++.+++|||++|||.|.+|+.++++.
T Consensus 141 v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~--G-~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~ 217 (258)
T PRK01033 141 VYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMK--G-YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILN 217 (258)
T ss_pred EEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcC--C-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 1 22357889999999999999999999987654 2 59999999999999999999999999999999976
Q ss_pred cCcceeeeehHHhhCC
Q 013813 308 TGCEGVLSAESLLENP 323 (436)
Q Consensus 308 tGaDgVmIGRgal~nP 323 (436)
+|||||++|+++...-
T Consensus 218 ~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 218 LGADAAAAGSLFVFKG 233 (258)
T ss_pred CCCCEEEEcceeeeCc
Confidence 7999999999887653
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=139.63 Aligned_cols=193 Identities=22% Similarity=0.185 Sum_probs=137.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
+.||+.|||.++|+..|...+.+.|. +++..+|.. ..+. ..++.. .+...+.+..+.+++....+..+++
T Consensus 34 ~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~~-------~~i~~v-k~~l~v~~~~~~~~~~~~~~~~l~e 104 (325)
T cd00381 34 NIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQA-------EEVRKV-KGRLLVGAAVGTREDDKERAEALVE 104 (325)
T ss_pred CCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHHH-------HHHHHh-ccCceEEEecCCChhHHHHHHHHHh
Confidence 56999999999999999998888887 676666532 1111 111111 1345566777778888887778888
Q ss_pred CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 181 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 181 ~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
.|+|.|+||+.. | +++.+.++++.+++... +||.+. + -.+.+.++.+.++|+|+|.|+
T Consensus 105 agv~~I~vd~~~----------G-----~~~~~~~~i~~ik~~~p~v~Vi~G-----~-v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 105 AGVDVIVIDSAH----------G-----HSVYVIEMIKFIKKKYPNVDVIAG-----N-VVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred cCCCEEEEECCC----------C-----CcHHHHHHHHHHHHHCCCceEEEC-----C-CCCHHHHHHHHhcCCCEEEEC
Confidence 999999999732 2 22567788888887653 555552 1 133456788889999999986
Q ss_pred cCccc---c-cCCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 260 GRTRD---E-KDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 260 gRt~~---~-~~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
..... . ...+.+.++|..+..+.+.. ++|||++|||.+..|+.+++.. |||+||+|+.+..-.+-
T Consensus 164 ~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~-GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 164 IGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAA-GADAVMLGSLLAGTDES 235 (325)
T ss_pred CCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHc-CCCEEEecchhcccccC
Confidence 33211 0 11223456788888777654 6999999999999999999985 99999999999876653
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-14 Score=134.98 Aligned_cols=151 Identities=26% Similarity=0.322 Sum_probs=114.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEEEEecc-
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRV- 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVsVKiRl- 234 (436)
+.|+++ .| .......+.+.++.|+|+|.+| +.++.+|+.+.++++.+.+ .+-+++.+|.|.
T Consensus 71 ~~pv~~--~G-GI~s~~d~~~~l~~G~~~v~ig--------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~ 133 (243)
T cd04731 71 FIPLTV--GG-GIRSLEDARRLLRAGADKVSIN--------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGD 133 (243)
T ss_pred CCCEEE--eC-CCCCHHHHHHHHHcCCceEEEC--------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCC
Confidence 356554 33 2233344444455689998877 4566789999999998853 455566555443
Q ss_pred ---------CC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHH
Q 013813 235 ---------FP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 235 ---------g~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~ 303 (436)
++ +..++.++++.+++.|+++|++|+++..+... .++|+.++++++.+++||+++|||++++|+.+
T Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~---g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~ 210 (243)
T cd04731 134 GGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKK---GYDLELIRAVSSAVNIPVIASGGAGKPEHFVE 210 (243)
T ss_pred CceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCC---CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHH
Confidence 32 24567889999999999999999998764322 46899999999999999999999999999999
Q ss_pred HHHhcCcceeeeehHHhhCCccch
Q 013813 304 CLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
+++.+|||+||+||+++..-.-+.
T Consensus 211 ~l~~~g~dgv~vg~al~~~~~~~~ 234 (243)
T cd04731 211 AFEEGGADAALAASIFHFGEYTIA 234 (243)
T ss_pred HHHhCCCCEEEEeHHHHcCCCCHH
Confidence 999889999999999887544333
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.9e-14 Score=133.44 Aligned_cols=142 Identities=24% Similarity=0.311 Sum_probs=113.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF- 235 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg- 235 (436)
+.|+ |+ |+++..+.++.++++.|++.|.+| +.++.+|+++.++++...+. .+++++++|.+
T Consensus 74 ~~pv--~~-~ggi~~~~d~~~~~~~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~ 135 (232)
T TIGR03572 74 FMPL--TV-GGGIRSLEDAKKLLSLGADKVSIN--------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKKEL 135 (232)
T ss_pred CCCE--EE-ECCCCCHHHHHHHHHcCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCC
Confidence 3555 44 556666666666667799999877 56788999999999887433 26778777663
Q ss_pred -----------C---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHH
Q 013813 236 -----------P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 301 (436)
Q Consensus 236 -----------~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda 301 (436)
| ...++.++++.+++.|++.|++|+++..+... .++|+.++++++.+++||+++|||++.+|+
T Consensus 136 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~---g~~~~~~~~i~~~~~ipvia~GGi~s~~di 212 (232)
T TIGR03572 136 DGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMK---GYDLELIKTVSDAVSIPVIALGGAGSLDDL 212 (232)
T ss_pred CCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcC---CCCHHHHHHHHhhCCCCEEEECCCCCHHHH
Confidence 1 13457899999999999999999988765432 368999999999999999999999999999
Q ss_pred HHHHHhcCcceeeeehHH
Q 013813 302 QKCLEETGCEGVLSAESL 319 (436)
Q Consensus 302 ~~~l~~tGaDgVmIGRga 319 (436)
.+++..+|||+|++|+++
T Consensus 213 ~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 213 VEVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHHcCCCEEEEehhh
Confidence 997777899999999986
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=131.47 Aligned_cols=143 Identities=23% Similarity=0.230 Sum_probs=110.7
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec----cCC-
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR----VFP- 236 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR----lg~- 236 (436)
+|+ |.....+.++.++++.|+|.|- .|++++.+++.+.++++.+.+.+-+++.+|.+ .++
T Consensus 77 v~~-~GGI~~~ed~~~~~~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 77 VQV-GGGIRSLETVEALLDAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWL 141 (233)
T ss_pred EEE-cCCcCCHHHHHHHHHcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCe
Confidence 444 3344445555555666888763 46778889999999999886654444444321 133
Q ss_pred --ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 237 --NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 --~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+..+..++++.+++.|++.|++|+++++++.. | +||+.++++++.+++|||++|||.|.+|++++++.+||||||
T Consensus 142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~--G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLS--G-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcC--C-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEE
Confidence 23466889999999999999999999886543 3 799999999999999999999999999999999986699999
Q ss_pred eehHHhhC
Q 013813 315 SAESLLEN 322 (436)
Q Consensus 315 IGRgal~n 322 (436)
+||+++..
T Consensus 219 vg~a~~~~ 226 (233)
T PRK00748 219 VGRALYEG 226 (233)
T ss_pred EEHHHHcC
Confidence 99999875
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=130.20 Aligned_cols=147 Identities=22% Similarity=0.256 Sum_probs=113.2
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl----- 234 (436)
+-+|+.|. .....++.++++.|+|.|- .|+.++.+|+++.++.+.+.+. .+.+++++|.
T Consensus 74 ~pv~~~Gg-I~~~e~~~~~~~~Gad~vv--------------igs~~l~dp~~~~~i~~~~g~~-~i~~sid~~~~~~~~ 137 (234)
T cd04732 74 IPVQVGGG-IRSLEDIERLLDLGVSRVI--------------IGTAAVKNPELVKELLKEYGGE-RIVVGLDAKDGKVAT 137 (234)
T ss_pred CCEEEeCC-cCCHHHHHHHHHcCCCEEE--------------ECchHHhChHHHHHHHHHcCCc-eEEEEEEeeCCEEEE
Confidence 33666554 4445556666678899874 4567788999999999987541 2333333332
Q ss_pred -CC---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 235 -FP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 235 -g~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
++ ...+..++++.+++.|++.|++|++++.+.. . .++|+.++++++.+++||+++|||.+.+|+.++++. ||
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~--~-g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~-Ga 213 (234)
T cd04732 138 KGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTL--S-GPNFELYKELAAATGIPVIASGGVSSLDDIKALKEL-GV 213 (234)
T ss_pred CCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc--C-CCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHC-CC
Confidence 22 2346788999999999999999999887653 2 389999999999999999999999999999999985 99
Q ss_pred ceeeeehHHhhCCccc
Q 013813 311 EGVLSAESLLENPALF 326 (436)
Q Consensus 311 DgVmIGRgal~nP~lf 326 (436)
|+||+||+++.++--+
T Consensus 214 ~gv~vg~~~~~~~~~~ 229 (234)
T cd04732 214 AGVIVGKALYEGKITL 229 (234)
T ss_pred CEEEEeHHHHcCCCCH
Confidence 9999999999997543
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=124.78 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=133.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEec-CCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC-ANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~-g~d~e~~~~AA~~v~ 180 (436)
+.|++.+.|....+..+-.+++++|.-.+.--| . .+.+....+. .....+++.+. |.+++++.++.++++
T Consensus 37 ~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k~-~-------~e~~~~~~r~-~~~~~l~v~~~vg~~~~~~~~~~~Lv~ 107 (326)
T PRK05458 37 KLPVVPANMQTIIDEKIAEWLAENGYFYIMHRF-D-------PEARIPFIKD-MHEQGLIASISVGVKDDEYDFVDQLAA 107 (326)
T ss_pred cCcEEEecccchhHHHHHHHHHHcCCEEEEecC-C-------HHHHHHHHHh-ccccccEEEEEecCCHHHHHHHHHHHh
Confidence 459999999989999888899988653333222 1 1111111111 11223455554 346788899999999
Q ss_pred CCC--cEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 181 PYC--DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 181 ~g~--D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
+|+ |.|-|.+.-+ +-+.+.++++++++... +||.+| +.. +.+-++.+.++|+|.|.
T Consensus 108 ag~~~d~i~iD~a~g---------------h~~~~~e~I~~ir~~~p~~~vi~g-----~V~-t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 108 EGLTPEYITIDIAHG---------------HSDSVINMIQHIKKHLPETFVIAG-----NVG-TPEAVRELENAGADATK 166 (326)
T ss_pred cCCCCCEEEEECCCC---------------chHHHHHHHHHHHhhCCCCeEEEE-----ecC-CHHHHHHHHHcCcCEEE
Confidence 854 9999975322 24678888999998884 888887 111 34557888899999998
Q ss_pred ec---cCcccc-cCCCCCccCHHH--HHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 258 VH---GRTRDE-KDGKKFRADWNA--IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 258 VH---gRt~~~-~~~~~g~ad~~~--i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
|+ |+.+.+ .....+.++|.+ +..+++.+++|||++|||.++.|+.++|.. |||+||+|+.++.
T Consensus 167 vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~-GA~aV~vG~~~~~ 235 (326)
T PRK05458 167 VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GATMVMIGSLFAG 235 (326)
T ss_pred ECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHh-CCCEEEechhhcC
Confidence 86 333222 112234577775 888888889999999999999999999997 9999999988874
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=124.24 Aligned_cols=142 Identities=24% Similarity=0.257 Sum_probs=109.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------ 234 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------ 234 (436)
-+|+.| ......++.++++.|+|.|= .|+.++++++.+.++++.+... .+.+++++|.
T Consensus 74 pi~~gg-GI~~~ed~~~~~~~Ga~~vv--------------lgs~~l~d~~~~~~~~~~~g~~-~i~~sid~~~~~v~~~ 137 (230)
T TIGR00007 74 PVQVGG-GIRSLEDVEKLLDLGVDRVI--------------IGTAAVENPDLVKELLKEYGPE-RIVVSLDARGGEVAVK 137 (230)
T ss_pred CEEEeC-CcCCHHHHHHHHHcCCCEEE--------------EChHHhhCHHHHHHHHHHhCCC-cEEEEEEEECCEEEEc
Confidence 355533 44444445555667888873 3566778899999999988522 2455566553
Q ss_pred CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 235 FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 235 g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
|+. ..+..++++.+++.|++.|++|.+++++... ..||+.++++++.+++||+++|||.+.+|++++++ +|||
T Consensus 138 g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~---g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~-~Gad 213 (230)
T TIGR00007 138 GWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLS---GPNFELTKELVKAVNVPVIASGGVSSIDDLIALKK-LGVY 213 (230)
T ss_pred CCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-CCCC
Confidence 232 2356789999999999999999999886543 47999999999999999999999999999999886 6999
Q ss_pred eeeeehHHhhC
Q 013813 312 GVLSAESLLEN 322 (436)
Q Consensus 312 gVmIGRgal~n 322 (436)
+||+|++++.+
T Consensus 214 gv~ig~a~~~~ 224 (230)
T TIGR00007 214 GVIVGKALYEG 224 (230)
T ss_pred EEEEeHHHHcC
Confidence 99999999887
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=125.61 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=114.1
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEEEE---ec-c
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCK---IR-V 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVsVK---iR-l 234 (436)
+-+|+ |.....+.++..+++.|+|.|-| |+.++++|+.+.++++.+.. .+-+.+.+| +. .
T Consensus 77 ~~l~v-~GGi~~~~~~~~~~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~ 141 (241)
T PRK13585 77 VPVQL-GGGIRSAEDAASLLDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIK 141 (241)
T ss_pred CcEEE-cCCcCCHHHHHHHHHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC
Confidence 44555 44444555555566789999865 56678899999999888732 221222222 11 1
Q ss_pred CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 235 FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 235 g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
|+. ..+..++++.+++.|++.|++|+++.++... ..+|+.++++++.+++||+++|||+|.+|+.++++ .||+
T Consensus 142 g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~---g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~-~Ga~ 217 (241)
T PRK13585 142 GWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLE---GVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKE-AGAA 217 (241)
T ss_pred CCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCC
Confidence 332 1267899999999999999999998764432 47999999999999999999999999999999655 6999
Q ss_pred eeeeehHHhhCCccchhhh
Q 013813 312 GVLSAESLLENPALFAGFR 330 (436)
Q Consensus 312 gVmIGRgal~nP~lf~~i~ 330 (436)
+|++|++++.+|..+.++.
T Consensus 218 gv~vgsa~~~~~~~~~~~~ 236 (241)
T PRK13585 218 GVVVGSALYKGKFTLEEAI 236 (241)
T ss_pred EEEEEHHHhcCCcCHHHHH
Confidence 9999999999999877654
|
|
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-13 Score=136.45 Aligned_cols=244 Identities=14% Similarity=0.183 Sum_probs=167.6
Q ss_pred CCCCCccccCCCCCCCCCCchhHhHHHHHHHHHH----hCCCc-------EEEccCCCCCcHHHHHHHHHhCCCeEEeCc
Q 013813 66 PSSLPETASSSLPSPRGYLSGEARAERAWAHWTK----LGRPK-------LIVAPMVDNSELPFRMLCRRYGAEAAYTPM 134 (436)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----lg~~~-------i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem 134 (436)
.+-+|||-..|.|||.-..--+|+|+.+|+|... |.+++ +.-.|.-+.... ...+ -....|.
T Consensus 110 ~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t~~~~~~------p~~~-i~~niel 182 (471)
T KOG1799|consen 110 QKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPTKRSCFI------PKRP-IPTNIEL 182 (471)
T ss_pred ccCCCccccCCCCCCccHHHHHhhhhcccchhheeeeecchhhheecccceeeccCCCCccc------cCCC-ccchhhh
Confidence 5788999999999999999999999999998732 22322 222222221110 0001 1456777
Q ss_pred ccchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHH
Q 013813 135 LHSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPL 212 (436)
Q Consensus 135 isa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~ 212 (436)
|+.+......... .+++...+.+-+|.+++. ++...+.+.+...+ +|.|..|+|+.||+..-.++ +|.++.+.|..
T Consensus 183 Isdr~~e~~L~~f-~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~erg-mgla~gq~p~v 260 (471)
T KOG1799|consen 183 ISDRKAEQYLGTF-GELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERG-MGLALGQCPIV 260 (471)
T ss_pred hccchHHHHHHHH-HHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCcccc-ccceeccChhh
Confidence 8776543322221 123322233334444333 55666777776665 48999999999999988777 89999999999
Q ss_pred HHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec---------------------cCcccccCCCCC
Q 013813 213 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH---------------------GRTRDEKDGKKF 271 (436)
Q Consensus 213 v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH---------------------gRt~~~~~~~~g 271 (436)
+.||..+|+..+.+|+.-| ..+++.+..+.++.....|+.+|+.. +|+.. .++++
T Consensus 261 ~~EvC~Wi~A~~~Ip~~~k--mTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~--GG~S~ 336 (471)
T KOG1799|consen 261 DCEVCGWINAKATIPMVSK--MTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTP--GGYSY 336 (471)
T ss_pred hHHHhhhhhhccccccccc--cCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCC--CCccc
Confidence 9999999999999999999 45577788888888888888887531 11111 11222
Q ss_pred ----ccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 272 ----RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 272 ----~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++.+..+..|++.. ..|+.+.|||.|.+|+.+++.. |+.-|+++.|.+..-
T Consensus 337 ~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~-Gs~~vQVCt~V~~~~ 392 (471)
T KOG1799|consen 337 KAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILL-GSNTVQVCTGVMMHG 392 (471)
T ss_pred cccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhc-CCcHhhhhhHHHhcC
Confidence 23344444455444 6899999999999999999986 999999999986644
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=125.18 Aligned_cols=141 Identities=19% Similarity=0.261 Sum_probs=109.7
Q ss_pred EEecC--CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHh-c----ccC-------cc
Q 013813 162 VQFCA--NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA-L----NLN-------VP 227 (436)
Q Consensus 162 vQL~g--~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~-~----~~~-------iP 227 (436)
+|+.| .+.+++.++ ++.|++.|-|+ +.++.+|+.+.++.+.+. + .++ .|
T Consensus 77 v~~~GGi~s~~~~~~~---l~~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~ 139 (253)
T PRK02083 77 LTVGGGIRSVEDARRL---LRAGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGR 139 (253)
T ss_pred EEeeCCCCCHHHHHHH---HHcCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCC
Confidence 44444 345555444 44688998765 556788999999998863 1 222 46
Q ss_pred EEEEeccCCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH
Q 013813 228 VSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 228 VsVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l 305 (436)
++||+|.+.. ..+..++++.+++.|++.|++|+..+.++.. .+||+.++++++.+++|||++|||.|.+|+.+++
T Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~---g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~ 216 (253)
T PRK02083 140 WEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKN---GYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAF 216 (253)
T ss_pred EEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCC---CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH
Confidence 7899998754 2366788999999999999998866543322 3689999999999999999999999999999999
Q ss_pred HhcCcceeeeehHHhhC
Q 013813 306 EETGCEGVLSAESLLEN 322 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~n 322 (436)
+.+|||+||+|++++..
T Consensus 217 ~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 217 TEGGADAALAASIFHFG 233 (253)
T ss_pred HhCCccEEeEhHHHHcC
Confidence 87899999999998765
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-11 Score=124.40 Aligned_cols=200 Identities=20% Similarity=0.243 Sum_probs=133.2
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCC-HHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAND-PEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d-~e~~~~ 174 (436)
..|+++|||.... +...-+.|.+.|.-.+.+-+-+ ..+ +. +.....+.|+.+||.-.. .+...+
T Consensus 80 ~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss-~sl----Ee----v~~~~~~~~~wfQlY~~~dr~~~~~ 150 (367)
T TIGR02708 80 KSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYST-ADL----PE----ISEALNGTPHWFQFYMSKDDGINRD 150 (367)
T ss_pred ccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeeccccc-CCH----HH----HHhhcCCCceEEEEeccCCHHHHHH
Confidence 4588999988643 4555566666666555544321 111 11 111113468999999854 444466
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhh---cCcc-----------------ccccc-----CChHHHHHHHHHHhcccCcc
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IAR---RGNY-----------------GAFLM-----DNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~---~~~~-----------------Gs~Ll-----~~p~~v~eIv~av~~~~~iP 227 (436)
..++++ .|+.+|-|...+|.. +.. +.++ +.... .++.+--+-++++++.+++|
T Consensus 151 li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~P 230 (367)
T TIGR02708 151 IMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLP 230 (367)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCC
Confidence 667765 499999998877752 111 0101 10000 01222225678888888999
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHH
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~ 303 (436)
|+|| |.. ..+.|+.+.++|+++|.| ||+. +...++++|+.+.++++.+ ++|||++|||++..|+.+
T Consensus 231 vivK---Gv~---~~eda~~a~~~Gvd~I~VS~HGGr----q~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~K 300 (367)
T TIGR02708 231 VYVK---GPQ---CPEDADRALKAGASGIWVTNHGGR----QLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFK 300 (367)
T ss_pred EEEe---CCC---CHHHHHHHHHcCcCEEEECCcCcc----CCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHH
Confidence 9999 221 245688899999998855 6653 2234578899999999877 499999999999999999
Q ss_pred HHHhcCcceeeeehHHhh
Q 013813 304 CLEETGCEGVLSAESLLE 321 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal~ 321 (436)
+|. .|||+|||||.+|.
T Consensus 301 aLa-lGAd~V~igR~~l~ 317 (367)
T TIGR02708 301 ALA-SGADLVALGRPVIY 317 (367)
T ss_pred HHH-cCCCEEEEcHHHHH
Confidence 999 59999999998765
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-12 Score=122.25 Aligned_cols=141 Identities=21% Similarity=0.250 Sum_probs=109.3
Q ss_pred EEecC--CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHh-ccc--Ccc-----E---
Q 013813 162 VQFCA--NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA-LNL--NVP-----V--- 228 (436)
Q Consensus 162 vQL~g--~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~-~~~--~iP-----V--- 228 (436)
+|+.| .+.+++.+ ++..|++.|-++ ..++.+|+++.++.+... +.+ .+. +
T Consensus 77 v~~~GGi~s~~d~~~---~~~~Ga~~vivg--------------t~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~ 139 (254)
T TIGR00735 77 LTVGGGIKSIEDVDK---LLRAGADKVSIN--------------TAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSY 139 (254)
T ss_pred EEEECCCCCHHHHHH---HHHcCCCEEEEC--------------hhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCC
Confidence 55544 34555444 445688887664 566788999999988773 222 222 1
Q ss_pred ---EEEeccCCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHH
Q 013813 229 ---SCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 229 ---sVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~ 303 (436)
-||+|.+.. ..+..++++.++++|++.|++|++++++.. ..++|++++++++.+++||+++|||.+++|+.+
T Consensus 140 ~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~---~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~ 216 (254)
T TIGR00735 140 CWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTK---SGYDLELTKAVSEAVKIPVIASGGAGKPEHFYE 216 (254)
T ss_pred ccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCC---CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHH
Confidence 477777644 456789999999999999999999886532 358999999999999999999999999999999
Q ss_pred HHHhcCcceeeeehHHhhC
Q 013813 304 CLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal~n 322 (436)
+++.+|||+||+|++++..
T Consensus 217 ~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 217 AFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHcCCcceeeEhHHHhCC
Confidence 9998679999999998654
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=125.79 Aligned_cols=202 Identities=18% Similarity=0.223 Sum_probs=132.2
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
..|+++|||.... +.+.-+.|.+.|.-.+.+-+- ...+ +. +.....+.+..+|+... |.+...+
T Consensus 72 ~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s-~~s~----Ee----i~~~~~~~~~wfQlY~~~d~~~~~~ 142 (351)
T cd04737 72 KTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYS-NTSL----EE----IAKASNGGPKWFQLYMSKDDGFNRS 142 (351)
T ss_pred cchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCC-CCCH----HH----HHHhcCCCCeEEEEeecCCHHHHHH
Confidence 3578889987532 244444555555555443331 1111 11 11112245899999975 4555555
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhhcC---cc------------------ccccc-----CChHHHHHHHHHHhcccCc
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IARRG---NY------------------GAFLM-----DNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~~~---~~------------------Gs~Ll-----~~p~~v~eIv~av~~~~~i 226 (436)
..++++ .||..|-|...+|.. +..++ ++ |.... -++.+--+.++++++.+++
T Consensus 143 ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~ 222 (351)
T cd04737 143 LLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGL 222 (351)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhCC
Confidence 556665 489999998877652 11111 00 00000 0122334667888888899
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~ 302 (436)
||.||- . ...+.++.+.++|+|+|+| ||+.. ...++..++.+.++++.+ ++|||++|||.+..|+.
T Consensus 223 PvivKg---v---~~~~dA~~a~~~G~d~I~vsnhGGr~----ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~ 292 (351)
T cd04737 223 PVIVKG---I---QSPEDADVAINAGADGIWVSNHGGRQ----LDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVF 292 (351)
T ss_pred cEEEec---C---CCHHHHHHHHHcCCCEEEEeCCCCcc----CCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHH
Confidence 999993 1 1235678899999999999 76532 123467789999999887 69999999999999999
Q ss_pred HHHHhcCcceeeeehHHhhCC
Q 013813 303 KCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal~nP 323 (436)
++|. .|||+|||||+++...
T Consensus 293 kaLa-lGA~~V~iGr~~l~~l 312 (351)
T cd04737 293 KALA-SGADAVAVGRPVLYGL 312 (351)
T ss_pred HHHH-cCCCEEEECHHHHHHH
Confidence 9999 5999999999887743
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-11 Score=118.33 Aligned_cols=229 Identities=18% Similarity=0.171 Sum_probs=155.8
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChh------------------------h----
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEK------------------------Y---- 146 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~------------------------~---- 146 (436)
.||.+--+|||.+|--.+-+.-+.-.|.. .|.+++-+.-++...-..|.+ .
T Consensus 87 k~~g~~f~NPiglAAGfdk~~eaidgL~~-~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~r 165 (398)
T KOG1436|consen 87 KVLGRKFSNPIGLAAGFDKNAEAIDGLAN-SGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQR 165 (398)
T ss_pred HHhhhhccCchhhhhccCcchHHHHHHHh-CCCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHH
Confidence 38876678999999988877776666665 777777666554311000000 0
Q ss_pred -hh-hhhhccCCCCCEEEEecCCC-----HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHH
Q 013813 147 -RN-EEFATCKEDRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219 (436)
Q Consensus 147 -~~-~~~~~~~~e~plivQL~g~d-----~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~a 219 (436)
+. ......+...++.|.|+-+. ..++.+-.+...+.+|+..||..||+.. |-.-|+.-..+.+++.+
T Consensus 166 l~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtp------Glr~lq~k~~L~~ll~~ 239 (398)
T KOG1436|consen 166 LRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTP------GLRSLQKKSDLRKLLTK 239 (398)
T ss_pred HHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCc------chhhhhhHHHHHHHHHH
Confidence 00 11122233455788887664 3445555555556789999999999963 22223333334444443
Q ss_pred Hhc-------ccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc------------ccCCCCCc----cCHH
Q 013813 220 LAL-------NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------EKDGKKFR----ADWN 276 (436)
Q Consensus 220 v~~-------~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~------------~~~~~~g~----ad~~ 276 (436)
+.. ....||.+||-.....++..+++..+.+.++|.+++.+-|.+ +..+.+|+ ...+
T Consensus 240 v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~ 319 (398)
T KOG1436|consen 240 VVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTN 319 (398)
T ss_pred HHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHH
Confidence 322 124699999887766778889999999999999999765432 22333333 3567
Q ss_pred HHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH-hhCCccchhhhh
Q 013813 277 AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 331 (436)
Q Consensus 277 ~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga-l~nP~lf~~i~~ 331 (436)
.++.+...+ +||||+.|||.|..||.+.++. ||..|++++++ +..|-+|.+++.
T Consensus 320 ~vR~mY~lt~g~IpiIG~GGV~SG~DA~Ekira-GASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436|consen 320 TVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRA-GASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred HHHHHHHhccCCCceEeecCccccHhHHHHHhc-CchHHHHHHHHhhcCchhHHHHHH
Confidence 788888876 7999999999999999999996 99999999997 788999988864
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-11 Score=119.88 Aligned_cols=206 Identities=17% Similarity=0.163 Sum_probs=133.3
Q ss_pred CCcEEEccCCCCC---c---HHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEec-CCCHHHHHH
Q 013813 102 RPKLIVAPMVDNS---E---LPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC-ANDPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt---d---~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~-g~d~e~~~~ 174 (436)
+.|+++|||.... . ...-+.|.+.|...+.+-+-+. .+ +.. .....++.|+.+||. ..|.+...+
T Consensus 64 ~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~-s~----e~v---~~~~~~~~~~w~Qly~~~d~~~~~~ 135 (344)
T cd02922 64 SLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC-SL----EEI---VDARPPDQPLFFQLYVNKDRTKTEE 135 (344)
T ss_pred CCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccC-CH----HHH---HHhcCCCCcEEEEEeecCCHHHHHH
Confidence 4689999999433 2 2444455555655544333211 11 111 111133568999996 457777777
Q ss_pred HHHHHcC-CCcEEEEecCCCch-hhh---cCccc-------------------ccc---cCChHHHHHHHHHHhcccCcc
Q 013813 175 AARRVEP-YCDYVDINLGCPQR-IAR---RGNYG-------------------AFL---MDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 175 AA~~v~~-g~D~IdLN~GCP~~-~~~---~~~~G-------------------s~L---l~~p~~v~eIv~av~~~~~iP 227 (436)
..++++. ||++|-|++..|.. +.. +.++- ... ..++....+.++++++.+++|
T Consensus 136 l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~P 215 (344)
T cd02922 136 LLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLP 215 (344)
T ss_pred HHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCc
Confidence 7777765 99999999988852 100 11110 000 113445567888999999999
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh---C--CCcEEEccCCCCHHHHH
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA---L--RIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~---~--~iPVianGGI~s~eda~ 302 (436)
|.|| +. ...+-++.+.++|+|+|+|.+.-..+... ...-+..+.++++. + ++|||+.|||.+..|+.
T Consensus 216 vivK---gv---~~~~dA~~a~~~G~d~I~vsnhgG~~~d~--~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~ 287 (344)
T cd02922 216 IVLK---GV---QTVEDAVLAAEYGVDGIVLSNHGGRQLDT--APAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVL 287 (344)
T ss_pred EEEE---cC---CCHHHHHHHHHcCCCEEEEECCCcccCCC--CCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHH
Confidence 9999 22 12456788999999999995432211111 12334556666552 2 59999999999999999
Q ss_pred HHHHhcCcceeeeehHHhhCCc
Q 013813 303 KCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++|.. |||+|+|||+++..+.
T Consensus 288 kalaL-GA~aV~iG~~~l~~l~ 308 (344)
T cd02922 288 KALCL-GAKAVGLGRPFLYALS 308 (344)
T ss_pred HHHHc-CCCEEEECHHHHHHHh
Confidence 99997 9999999999988664
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=118.45 Aligned_cols=196 Identities=20% Similarity=0.295 Sum_probs=119.4
Q ss_pred HHHHhC-CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHH
Q 013813 96 HWTKLG-RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILL 173 (436)
Q Consensus 96 ~~~~lg-~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~ 173 (436)
+++.|| +.||++|||.++|+..|-..+.+.|. +.+-+-..+.+.+.......+. + .++|+.|+++....+...
T Consensus 4 ~t~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~-~----t~~pfgvnl~~~~~~~~~ 78 (330)
T PF03060_consen 4 LTELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRA-L----TDKPFGVNLFLPPPDPAD 78 (330)
T ss_dssp HHHHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHH-H-----SS-EEEEEETTSTTHHH
T ss_pred HHHHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHh-h----ccccccccccccCcccch
Confidence 667788 88999999999999999888888876 4444333333333222111111 1 245999999876533322
Q ss_pred H----------H-HH-HHcC--------------CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc
Q 013813 174 N----------A-AR-RVEP--------------YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 174 ~----------A-A~-~v~~--------------g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP 227 (436)
. . .. .++. +++.|-..+|.|.. ++++.+++ .++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~-------------------~~i~~l~~-~gi~ 138 (330)
T PF03060_consen 79 EEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP-------------------EVIERLHA-AGIK 138 (330)
T ss_dssp H-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H-------------------HHHHHHHH-TT-E
T ss_pred hhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH-------------------HHHHHHHH-cCCc
Confidence 2 1 11 1222 34588888877742 23444443 3677
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
|.+.+- ..+.|+.+.+.|+|.|++.|....+-.+.....-+.++..+++.+++|||+.|||.+.+++..+|..
T Consensus 139 v~~~v~-------s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~l 211 (330)
T PF03060_consen 139 VIPQVT-------SVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALAL 211 (330)
T ss_dssp EEEEES-------SHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHC
T ss_pred cccccC-------CHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHc
Confidence 777742 2445778899999999998876543222111123678889999999999999999999999999986
Q ss_pred cCcceeeeehHHhhCCc
Q 013813 308 TGCEGVLSAESLLENPA 324 (436)
Q Consensus 308 tGaDgVmIGRgal~nP~ 324 (436)
|||||++|+.++.-++
T Consensus 212 -GA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 212 -GADGVQMGTRFLATEE 227 (330)
T ss_dssp -T-SEEEESHHHHTSTT
T ss_pred -CCCEeecCCeEEeccc
Confidence 9999999999987766
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.6e-11 Score=120.15 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=124.2
Q ss_pred HHHHHHHHHHH-cCCCcEEEEec---------CCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEecc--
Q 013813 169 PEILLNAARRV-EPYCDYVDINL---------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV-- 234 (436)
Q Consensus 169 ~e~~~~AA~~v-~~g~D~IdLN~---------GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRl-- 234 (436)
.|-+..||+.+ +.|||+||||- -.|..|.|+|.||+++.++-+++.|++++|++.++ ....+-+..
T Consensus 173 ~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 173 VDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 56777778877 77999999993 48999999999999999999999999999999873 333333331
Q ss_pred ----CCChhhHHHHHHHHHHcCccEEEeccCcccc-------cCCC--CCccCHHHHHHHHhhCCCcEE-EccCCCCHHH
Q 013813 235 ----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KDGK--KFRADWNAIKAVKNALRIPVL-ANGNVRHMED 300 (436)
Q Consensus 235 ----g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-------~~~~--~g~ad~~~i~~ik~~~~iPVi-anGGI~s~ed 300 (436)
+++.++...++..++..|+|.+-+.|++... ++.- .-....++...++...+.+|+ ++||..+.+.
T Consensus 253 fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~ 332 (400)
T KOG0134|consen 253 FQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREA 332 (400)
T ss_pred hhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHH
Confidence 3566777888999999999965554443321 1110 001234556667767666665 6678999999
Q ss_pred HHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 301 VQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 301 a~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
+.++++....|+|..||.++.||+|..++..+
T Consensus 333 ~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~ 364 (400)
T KOG0134|consen 333 MVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG 364 (400)
T ss_pred HHHHHhcCCceeEEecchhccCCchhHHHHhC
Confidence 99999998888999999999999999988643
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=109.78 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=132.4
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCC-CEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDR-PLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~-plivQL~g~d~e~~~~AA~~v~ 180 (436)
..||+.+.|..+.+..+-.+++++|.-.+.-+| +.... ..+ ++...+.. ++.+. .|..++++.++..+++
T Consensus 34 ~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~-~~E~~---~sf----vrk~k~~~L~v~~S-vG~t~e~~~r~~~lv~ 104 (321)
T TIGR01306 34 KLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF-DEESR---IPF----IKDMQERGLFASIS-VGVKACEYEFVTQLAE 104 (321)
T ss_pred cCcEEeeccchhhhHHHHHHHHHcCCEEEEecC-CHHHH---HHH----HHhccccccEEEEE-cCCCHHHHHHHHHHHh
Confidence 458999999999999998999998765554443 22211 111 22222222 23333 3667888999999999
Q ss_pred CC--CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 181 PY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 181 ~g--~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
+| .|.|-+-.. .| +-+.+.+.++++++....|+.++=.+ .+.+.|+.+.++|+|.|.|
T Consensus 105 a~~~~d~i~~D~a-------hg--------~s~~~~~~i~~i~~~~p~~~vi~GnV-----~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 105 EALTPEYITIDIA-------HG--------HSNSVINMIKHIKTHLPDSFVIAGNV-----GTPEAVRELENAGADATKV 164 (321)
T ss_pred cCCCCCEEEEeCc-------cC--------chHHHHHHHHHHHHhCCCCEEEEecC-----CCHHHHHHHHHcCcCEEEE
Confidence 87 688766531 11 34678889999998887775555222 2456788999999999999
Q ss_pred c---cCccccc-CCCCCccCH--HHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 259 H---GRTRDEK-DGKKFRADW--NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 259 H---gRt~~~~-~~~~g~ad~--~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+ |++...+ ....+..+| ..+.++++..++|||+.|||++..|+.++|.. |||+||+||.+-.
T Consensus 165 ~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~-GAd~Vmig~~~ag 232 (321)
T TIGR01306 165 GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GASMVMIGSLFAG 232 (321)
T ss_pred CCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHc-CCCEEeechhhcC
Confidence 7 5543111 111123345 47888888889999999999999999999997 9999999976643
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=109.80 Aligned_cols=152 Identities=24% Similarity=0.272 Sum_probs=119.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-- 234 (436)
..++-||++|.- -+...+..+++.|++.|-+ |+.-.++|+++.++++..... +-|.+-.|.
T Consensus 73 ~~~~~vQvGGGI-Rs~~~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~r--ivv~lD~r~g~ 135 (241)
T COG0106 73 ATDVPVQVGGGI-RSLEDVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDR--IVVALDARDGK 135 (241)
T ss_pred hCCCCEEeeCCc-CCHHHHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCc--EEEEEEccCCc
Confidence 346679998753 3345555667778776654 566689999999999998744 455555555
Q ss_pred ----CCCh---hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 235 ----FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 235 ----g~~~---~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
||.. -+..++++.+++.|+..|.+|..+++++.. .+|++.++++.+.+++||+++|||.|.+|++.+.+.
T Consensus 136 vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~---G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~ 212 (241)
T COG0106 136 VAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLS---GPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKEL 212 (241)
T ss_pred cccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccC---CCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhc
Confidence 3432 267899999999999999999999987654 479999999999999999999999999999987764
Q ss_pred cCcceeeeehHHhhCCccchh
Q 013813 308 TGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 308 tGaDgVmIGRgal~nP~lf~~ 328 (436)
.|+.||.+||++|..-.-+.+
T Consensus 213 ~G~~GvIvG~ALy~g~~~l~e 233 (241)
T COG0106 213 SGVEGVIVGRALYEGKFTLEE 233 (241)
T ss_pred CCCcEEEEehHHhcCCCCHHH
Confidence 389999999999987654443
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=112.48 Aligned_cols=135 Identities=21% Similarity=0.211 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
|..++.+.++..++++|+|.|=|-..- .+.+.+.++++.+++.+ +.+|.++ + -.+.+-
T Consensus 149 g~~~~~~~~v~~lv~aGvDvI~iD~a~---------------g~~~~~~~~v~~ik~~~p~~~vi~g-----~-V~T~e~ 207 (404)
T PRK06843 149 SIDIDTIERVEELVKAHVDILVIDSAH---------------GHSTRIIELVKKIKTKYPNLDLIAG-----N-IVTKEA 207 (404)
T ss_pred eCCHHHHHHHHHHHhcCCCEEEEECCC---------------CCChhHHHHHHHHHhhCCCCcEEEE-----e-cCCHHH
Confidence 556788888888899999998886432 12467888999999887 6888887 2 122345
Q ss_pred HHHHHHcCccEEEeccCcccc----c-CCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDE----K-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~----~-~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+.++|+|+|.+ |.+... + ....|.+++..+..+++ ..++|||+.|||++..|+.++|.. |||+||+|
T Consensus 208 a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALal-GA~aVmvG 285 (404)
T PRK06843 208 ALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAA-GADSVMIG 285 (404)
T ss_pred HHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEc
Confidence 77788899999986 432211 1 01123456665544444 458999999999999999999996 99999999
Q ss_pred hHHhhCC
Q 013813 317 ESLLENP 323 (436)
Q Consensus 317 Rgal~nP 323 (436)
+.+..-.
T Consensus 286 s~~agt~ 292 (404)
T PRK06843 286 NLFAGTK 292 (404)
T ss_pred ceeeeee
Confidence 9987643
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=110.32 Aligned_cols=198 Identities=18% Similarity=0.164 Sum_probs=131.7
Q ss_pred CcEEEccCCC------CCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHH
Q 013813 103 PKLIVAPMVD------NSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAA 176 (436)
Q Consensus 103 ~~i~lAPM~g------vtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA 176 (436)
.|+++||+.- -.+.+.-+.|.+.|...+.+-+-+.. + +.... ..+.|..+||.-.+.+......
T Consensus 65 ~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~s-i----Eeva~-----a~~~~~wfQLY~~~r~~~~~ll 134 (361)
T cd04736 65 APLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMS-I----EDVAR-----QADGDLWFQLYVVHRELAELLV 134 (361)
T ss_pred ccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCC-H----HHHHh-----hcCCCeEEEEEecCHHHHHHHH
Confidence 5778888754 23455556666677666555543221 1 11111 1235799999998855555555
Q ss_pred HHHc-CCCcEEEEecCCCch-hhh---cCccccc----------------------------c-----------------
Q 013813 177 RRVE-PYCDYVDINLGCPQR-IAR---RGNYGAF----------------------------L----------------- 206 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~-~~~---~~~~Gs~----------------------------L----------------- 206 (436)
++++ .||.+|-|...+|.. +.. +.++-.- +
T Consensus 135 ~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (361)
T cd04736 135 KRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAAL 214 (361)
T ss_pred HHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHH
Confidence 6665 499999999877762 211 1111000 0
Q ss_pred ---cCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHH
Q 013813 207 ---MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAV 281 (436)
Q Consensus 207 ---l~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~i 281 (436)
.-++.+.-+.++++++.++.||.+| +.. ..+-++.+.++|+|+|.| ||.+.- .. .+...+.+.++
T Consensus 215 ~~~~~d~~~~w~~i~~ir~~~~~pviiK-----gV~-~~eda~~a~~~G~d~I~VSnhGGrql--d~--~~~~~~~L~ei 284 (361)
T cd04736 215 MSRQMDASFNWQDLRWLRDLWPHKLLVK-----GIV-TAEDAKRCIELGADGVILSNHGGRQL--DD--AIAPIEALAEI 284 (361)
T ss_pred HHhccCCcCCHHHHHHHHHhCCCCEEEe-----cCC-CHHHHHHHHHCCcCEEEECCCCcCCC--cC--CccHHHHHHHH
Confidence 0122233357888999999999999 222 233477788999999988 444322 22 24568889999
Q ss_pred HhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 282 k~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++.+++|||+.|||++..|+.++|.. |||+|||||+++.
T Consensus 285 ~~~~~~~vi~dGGIr~g~Dv~KALaL-GA~aV~iGr~~l~ 323 (361)
T cd04736 285 VAATYKPVLIDSGIRRGSDIVKALAL-GANAVLLGRATLY 323 (361)
T ss_pred HHHhCCeEEEeCCCCCHHHHHHHHHc-CCCEEEECHHHHH
Confidence 98889999999999999999999997 9999999998875
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-10 Score=111.80 Aligned_cols=90 Identities=21% Similarity=0.357 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++++.+++.|++.|+||.+++.+... +.+|+.++++++.+++||+++|||+|.+|+++++. .||++|++|++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~-~Ga~~Viigt~ 105 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLR-AGADKVSINSA 105 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 478899999999999999999999864332 68999999999999999999999999999999998 59999999999
Q ss_pred HhhCCccchhhhhh
Q 013813 319 LLENPALFAGFRTA 332 (436)
Q Consensus 319 al~nP~lf~~i~~~ 332 (436)
++.||++|.++...
T Consensus 106 ~l~~p~~~~ei~~~ 119 (253)
T PRK02083 106 AVANPELISEAADR 119 (253)
T ss_pred HhhCcHHHHHHHHH
Confidence 99999999988653
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-09 Score=106.73 Aligned_cols=188 Identities=15% Similarity=0.143 Sum_probs=119.9
Q ss_pred CCcEEEccCCCCCc-HHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHH-HHHHHHH-
Q 013813 102 RPKLIVAPMVDNSE-LPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPE-ILLNAAR- 177 (436)
Q Consensus 102 ~~~i~lAPM~gvtd-~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e-~~~~AA~- 177 (436)
+.||+++||.++|+ ..|-..+.+.|+ +++-....+...+...... .+..-.++|+.|.|.+..++ .+.+..+
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~----~~~l~tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEE----TAELLGDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHH----HHHhccCCCeEEEEeccCCCcchHHHHHH
Confidence 45899999999999 788887777775 3332233322222111111 11112478999999653221 1223333
Q ss_pred HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 178 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 178 ~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
+++.++..|-+.+|.|.. ++.++ ..++.|.+.+ .+...++.+++.|+|.|+
T Consensus 78 i~e~~v~~V~~~~G~P~~---------------------~~~lk-~~Gi~v~~~v-------~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 78 VRAIKPTFALIAGGRPDQ---------------------ARALE-AIGISTYLHV-------PSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHhcCCcEEEEcCCChHH---------------------HHHHH-HCCCEEEEEe-------CCHHHHHHHHHcCCCEEE
Confidence 345688899888766631 13333 3377777663 224567889999999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhh----------CCCcEEEccCCCCHHHHHHHHHhcCc--------ceeeeehHH
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNA----------LRIPVLANGNVRHMEDVQKCLEETGC--------EGVLSAESL 319 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~----------~~iPVianGGI~s~eda~~~l~~tGa--------DgVmIGRga 319 (436)
+.|....+-.+. ...+.++..+.+. .++|||+.|||.+...+..++.. |+ +||.+|+.+
T Consensus 129 aqG~EAGGH~G~--~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaL-GA~~~~~Ga~~GV~mGTrF 205 (320)
T cd04743 129 FEGRECGGHVGP--RSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSAL-AAPLAERGAKVGVLMGTAY 205 (320)
T ss_pred EecCcCcCCCCC--CCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHc-CCcccccccccEEEEccHH
Confidence 998877543221 1112233333332 27999999999999999988876 77 899999999
Q ss_pred hhCCcc
Q 013813 320 LENPAL 325 (436)
Q Consensus 320 l~nP~l 325 (436)
+.-++.
T Consensus 206 l~t~Es 211 (320)
T cd04743 206 LFTEEA 211 (320)
T ss_pred hcchhh
Confidence 886665
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=109.96 Aligned_cols=90 Identities=22% Similarity=0.371 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
..++.++++.++++|++.|++|.++..... .+.+++.++++++.+++||+++|||+|.+|++++++. |||+|++|+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~---~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~-G~~~v~ig~ 101 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEG---RETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRA-GADKVSINS 101 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCccccc---CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc-CCceEEECc
Confidence 348889999999999999999999875422 3679999999999999999999999999999999985 999999999
Q ss_pred HHhhCCccchhhhh
Q 013813 318 SLLENPALFAGFRT 331 (436)
Q Consensus 318 gal~nP~lf~~i~~ 331 (436)
+++.||+++.++..
T Consensus 102 ~~~~~p~~~~~i~~ 115 (243)
T cd04731 102 AAVENPELIREIAK 115 (243)
T ss_pred hhhhChHHHHHHHH
Confidence 99999999988764
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=111.35 Aligned_cols=204 Identities=19% Similarity=0.172 Sum_probs=130.0
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
..|+++||+.... +.+.-+.|.+.|.-.+.+-+ +...+ +. +.. ..+.+..+||.-. |.+...+
T Consensus 72 ~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~-s~~sl----Ee----va~-~~~~~~wfQlY~~~dr~~~~~ 141 (364)
T PLN02535 72 SAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFM-ASCTV----EE----VAS-SCNAVRFLQLYVYKRRDIAAQ 141 (364)
T ss_pred cccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCc-ccCCH----HH----HHh-cCCCCeEEEEeccCCHHHHHH
Confidence 3589999987532 34444455555554444333 11111 11 111 1246899999984 4666666
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhhcC---cccc--------------------c----c--cCChHHHHHHHHHHhcc
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IARRG---NYGA--------------------F----L--MDNLPLVKSLVEKLALN 223 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~~~---~~Gs--------------------~----L--l~~p~~v~eIv~av~~~ 223 (436)
..++++ .||.+|-|...+|.. +..++ ++.. . + .-++.+--+-++++++.
T Consensus 142 ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~ 221 (364)
T PLN02535 142 LVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSI 221 (364)
T ss_pred HHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhc
Confidence 667775 499999998888772 11111 1100 0 0 00222223567888888
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHH
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDV 301 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda 301 (436)
.+.||.||- ... .+-++.+.++|+|+|.|.+.-.-+. ..++.....+.++++.+ ++|||+.|||.+..|+
T Consensus 222 ~~~PvivKg-----V~~-~~dA~~a~~~GvD~I~vsn~GGr~~--d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv 293 (364)
T PLN02535 222 TNLPILIKG-----VLT-REDAIKAVEVGVAGIIVSNHGARQL--DYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDV 293 (364)
T ss_pred cCCCEEEec-----CCC-HHHHHHHHhcCCCEEEEeCCCcCCC--CCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHH
Confidence 899999992 111 2337888899999999954322121 11244467788888765 6999999999999999
Q ss_pred HHHHHhcCcceeeeehHHhhCCc
Q 013813 302 QKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 302 ~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.++|.. |||+|+|||+++....
T Consensus 294 ~KALal-GA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 294 FKALAL-GAQAVLVGRPVIYGLA 315 (364)
T ss_pred HHHHHc-CCCEEEECHHHHhhhh
Confidence 999997 9999999999987554
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-09 Score=107.88 Aligned_cols=202 Identities=21% Similarity=0.208 Sum_probs=129.4
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
..|+.+||+.... +...-+.|.+.|.-.+.+-+-+. .+ +. +.....+.+..+||.-. |.+...+
T Consensus 85 ~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~-sl----Ee----Ia~~~~~~~~wfQlY~~~dr~~~~~ 155 (383)
T cd03332 85 AAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSS-SI----ED----VAAAAGDAPRWFQLYWPKDDDLTES 155 (383)
T ss_pred cccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCC-CH----HH----HHhhcCCCCcEEEeeCCCCHHHHHH
Confidence 3588999998533 45555566666665555444321 11 11 11112346899999886 5666666
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhhc---Ccccccc--------c----------------------------------
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IARR---GNYGAFL--------M---------------------------------- 207 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~~---~~~Gs~L--------l---------------------------------- 207 (436)
..++++ .||.+|-|....|.. +..+ .++.... +
T Consensus 156 ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (383)
T cd03332 156 LLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVF 235 (383)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhc
Confidence 666665 499999998666552 1111 1110000 0
Q ss_pred CChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-- 285 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-- 285 (436)
-++.+--+-++++++.++.||.+| .... .+-|+.+.++|+|+|+|.+.-.-+. ..+.+..+.+.++++.+
T Consensus 236 ~~~~~tW~~i~~lr~~~~~pvivK-----gV~~-~~dA~~a~~~G~d~I~vsnhGGr~~--d~~~~t~~~L~ei~~~~~~ 307 (383)
T cd03332 236 SGPSLTWEDLAFLREWTDLPIVLK-----GILH-PDDARRAVEAGVDGVVVSNHGGRQV--DGSIAALDALPEIVEAVGD 307 (383)
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEe-----cCCC-HHHHHHHHHCCCCEEEEcCCCCcCC--CCCcCHHHHHHHHHHHhcC
Confidence 011122256777888889999999 1122 2446778899999999953222111 12345577888888876
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++||++.|||++..|+.++|.. |||+|++||.++.
T Consensus 308 ~~~vi~dGGIr~G~Dv~KALaL-GA~~v~iGr~~l~ 342 (383)
T cd03332 308 RLTVLFDSGVRTGADIMKALAL-GAKAVLIGRPYAY 342 (383)
T ss_pred CCeEEEeCCcCcHHHHHHHHHc-CCCEEEEcHHHHH
Confidence 5999999999999999999986 9999999999883
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=102.53 Aligned_cols=201 Identities=19% Similarity=0.206 Sum_probs=129.1
Q ss_pred CCcEEEccCCCC------CcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDN------SELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gv------td~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
..|+++||+... .+.+.-+.|.+.|.-.+.+-+- ...+ +. +... .+.+..+||.-. |.+...+
T Consensus 69 ~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~s-s~sl----Ee----Ia~a-~~~~~wfQLY~~~Dr~~~~~ 138 (366)
T PLN02979 69 SMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWA-TSSV----EE----VAST-GPGIRFFQLYVYKNRNVVEQ 138 (366)
T ss_pred CccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCc-CCCH----HH----HHhc-cCCCeEEEEeecCCHHHHHH
Confidence 458999998853 2345555666666655544422 1111 11 1111 235799999864 5555555
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhh---cCcccc-------cc----------------------cCChHHHHHHHHHH
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IAR---RGNYGA-------FL----------------------MDNLPLVKSLVEKL 220 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~---~~~~Gs-------~L----------------------l~~p~~v~eIv~av 220 (436)
-.++++ .|+.+|-|...+|.. +.. +.++.. .+ .-++.+-=+-++++
T Consensus 139 ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wl 218 (366)
T PLN02979 139 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 218 (366)
T ss_pred HHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 556665 499999998877773 111 111100 00 00112222557889
Q ss_pred hcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCH
Q 013813 221 ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHM 298 (436)
Q Consensus 221 ~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~ 298 (436)
++..++||.||-= .. .+-|+.+.++|+|+|+|.+.-..+. ...++..+.+.++++.+ ++||++.|||++.
T Consensus 219 r~~~~~PvivKgV-----~~-~~dA~~a~~~Gvd~I~VsnhGGrql--d~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G 290 (366)
T PLN02979 219 QTITKLPILVKGV-----LT-GEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEVVKATQGRIPVFLDGGVRRG 290 (366)
T ss_pred HhccCCCEEeecC-----CC-HHHHHHHHhcCCCEEEECCCCcCCC--CCchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 9999999999931 22 3457788999999999965433222 12244567788887765 5999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhh
Q 013813 299 EDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~ 321 (436)
.|+.++|.. |||+|+|||.++.
T Consensus 291 ~Di~KALAL-GAdaV~iGrp~L~ 312 (366)
T PLN02979 291 TDVFKALAL-GASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHHc-CCCEEEEcHHHHH
Confidence 999999997 9999999998764
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=104.44 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=127.8
Q ss_pred CCcEEEccCCCC------CcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHH
Q 013813 102 RPKLIVAPMVDN------SELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gv------td~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~ 174 (436)
..|+++||+... .+...-+.|.+.|...+.+.+-+. .+ +. +... .+.++.+||.- .|.+...+
T Consensus 70 ~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~-sl----Ee----ia~~-~~~~~wfQlY~~~Dr~~~~~ 139 (381)
T PRK11197 70 SMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVC-PI----EE----VAPA-IKRPMWFQLYVLRDRGFMRN 139 (381)
T ss_pred ccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcC-CH----HH----HHhc-cCCCeEEEEEecCCHHHHHH
Confidence 357888888742 456666677777776655553221 11 11 1111 24689999964 46666666
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhh---cCccccc------c---cCC-----------------------------hH
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IAR---RGNYGAF------L---MDN-----------------------------LP 211 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~---~~~~Gs~------L---l~~-----------------------------p~ 211 (436)
..++++ .||.+|-|...+|.. +.. +.++-.- + +.+ ..
T Consensus 140 li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~ 219 (381)
T PRK11197 140 ALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED 219 (381)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhH
Confidence 667775 499999999888862 111 1111100 0 000 00
Q ss_pred H---H---------HHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHH
Q 013813 212 L---V---------KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 212 ~---v---------~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~ 279 (436)
+ + =+-++++++.++.||.+| ... ..+-|+.+.++|+|+|.|.+.-..+... ...-.+.+.
T Consensus 220 ~~~~~~~~~~~~ltW~di~~lr~~~~~pvivK-----gV~-s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~--~~~t~~~L~ 291 (381)
T PRK11197 220 YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIK-----GIL-DPEDARDAVRFGADGIVVSNHGGRQLDG--VLSSARALP 291 (381)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHhCCCCEEEE-----ecC-CHHHHHHHHhCCCCEEEECCCCCCCCCC--cccHHHHHH
Confidence 0 0 022778888899999999 222 2334777889999999984322112111 133456777
Q ss_pred HHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 280 AVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 280 ~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++++.+ ++||++.|||++..|+.++|.. |||+|++||.++.
T Consensus 292 ~i~~a~~~~~~vi~dGGIr~g~Di~KALaL-GA~~V~iGr~~l~ 334 (381)
T PRK11197 292 AIADAVKGDITILADSGIRNGLDVVRMIAL-GADTVLLGRAFVY 334 (381)
T ss_pred HHHHHhcCCCeEEeeCCcCcHHHHHHHHHc-CcCceeEhHHHHH
Confidence 777665 6999999999999999999997 9999999998865
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.3e-09 Score=101.00 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=114.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCC----hHHHHHHHHHH-hcccCccEEEEe
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN----LPLVKSLVEKL-ALNLNVPVSCKI 232 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~----p~~v~eIv~av-~~~~~iPVsVKi 232 (436)
.++-||++|.=- . .++.++++.|++-|-|| +...++ |+++.++++.. .+.+-+-+.+|.
T Consensus 82 ~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~ 145 (262)
T PLN02446 82 YPGGLQVGGGVN-S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK 145 (262)
T ss_pred CCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 347799999875 3 66667788899999887 344455 99999999998 333333333331
Q ss_pred cc--------CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHH
Q 013813 233 RV--------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 301 (436)
Q Consensus 233 Rl--------g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda 301 (436)
.- ||. .-+..+++..+.+.|+..|.++...++++.. .+|++.++++++.+++|||++|||.|.+|+
T Consensus 146 ~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~---G~d~el~~~l~~~~~ipVIASGGv~sleDi 222 (262)
T PLN02446 146 KDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRL---GIDEELVALLGEHSPIPVTYAGGVRSLDDL 222 (262)
T ss_pred cCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCccc---CCCHHHHHHHHhhCCCCEEEECCCCCHHHH
Confidence 12 332 2367888889999999999999988886544 479999999999999999999999999999
Q ss_pred HHHHHhc-CcceeeeehHH--hhCCccc
Q 013813 302 QKCLEET-GCEGVLSAESL--LENPALF 326 (436)
Q Consensus 302 ~~~l~~t-GaDgVmIGRga--l~nP~lf 326 (436)
.++.+.+ |+.+|.+|+++ +.+---+
T Consensus 223 ~~L~~~g~g~~gvIvGkAl~~y~g~~~l 250 (262)
T PLN02446 223 ERVKVAGGGRVDVTVGSALDIFGGNLPY 250 (262)
T ss_pred HHHHHcCCCCEEEEEEeeHHHhCCCccH
Confidence 9988764 78999999999 5554333
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=104.80 Aligned_cols=199 Identities=23% Similarity=0.284 Sum_probs=125.4
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
+.||++|||.+.+ +...-+.|.+.|.-...+-+-+. .+ +... .. ...|..+||.-. +.+...+
T Consensus 58 s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~-~~----e~ia---~~--~~~~~~~Qly~~~d~~~~~~ 127 (356)
T PF01070_consen 58 SMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSA-SL----EEIA---AA--SGGPLWFQLYPPRDRELTRD 127 (356)
T ss_dssp SSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSS-CH----HHHH---HH--CTSEEEEEEEGBSSHHHHHH
T ss_pred CCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccC-CH----HHHH---hh--ccCCeEEEEEEecCHHHHHH
Confidence 5689999998643 34555566666765544333221 11 1111 11 127899999654 6777777
Q ss_pred HHHHHcC-CCcEEEEecCCCchhhh----cCcccc---------------------------------------ccc---
Q 013813 175 AARRVEP-YCDYVDINLGCPQRIAR----RGNYGA---------------------------------------FLM--- 207 (436)
Q Consensus 175 AA~~v~~-g~D~IdLN~GCP~~~~~----~~~~Gs---------------------------------------~Ll--- 207 (436)
..++++. |+++|-++..+|+...+ +.++.- .+.
T Consensus 128 ~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (356)
T PF01070_consen 128 LIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQ 207 (356)
T ss_dssp HHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCH
T ss_pred HHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHh
Confidence 7777764 99999998766552111 111100 000
Q ss_pred CChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHHHhhC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL 285 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~ 285 (436)
-++..--+-++++++.+++||.||== .+ .+-++.+.++|+++|.| ||.+.- . .+..-.+.+.++++.+
T Consensus 208 ~~~~~~w~~i~~~~~~~~~pvivKgv--~~----~~da~~~~~~G~~~i~vs~hGGr~~--d--~~~~~~~~L~~i~~~~ 277 (356)
T PF01070_consen 208 FDPSLTWDDIEWIRKQWKLPVIVKGV--LS----PEDAKRAVDAGVDGIDVSNHGGRQL--D--WGPPTIDALPEIRAAV 277 (356)
T ss_dssp B-TT-SHHHHHHHHHHCSSEEEEEEE---S----HHHHHHHHHTT-SEEEEESGTGTSS--T--TS-BHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhcccCCceEEEec--cc----HHHHHHHHhcCCCEEEecCCCcccC--c--cccccccccHHHHhhh
Confidence 02223334578888889999999932 12 23367788999999999 455432 1 2355577888888866
Q ss_pred --CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 286 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 286 --~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++||++.|||++..|+.+++.. ||++|.|||.++.
T Consensus 278 ~~~~~i~~dgGir~g~Dv~kalaL-GA~~v~igr~~l~ 314 (356)
T PF01070_consen 278 GDDIPIIADGGIRRGLDVAKALAL-GADAVGIGRPFLY 314 (356)
T ss_dssp TTSSEEEEESS--SHHHHHHHHHT-T-SEEEESHHHHH
T ss_pred cCCeeEEEeCCCCCHHHHHHHHHc-CCCeEEEccHHHH
Confidence 5999999999999999999997 9999999998764
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-09 Score=102.31 Aligned_cols=145 Identities=26% Similarity=0.337 Sum_probs=108.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC--
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-- 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-- 235 (436)
.++-+|+.|. ...+.++.++++.|++.|-|| +..+++|+++.++++..... .+-+++-+|-+
T Consensus 72 ~~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvig--------------t~~~~~~~~l~~~~~~~g~~-~ivvslD~~~g~~ 135 (229)
T PF00977_consen 72 TGIPIQVGGG-IRSIEDAERLLDAGADRVVIG--------------TEALEDPELLEELAERYGSQ-RIVVSLDARDGYK 135 (229)
T ss_dssp SSSEEEEESS-E-SHHHHHHHHHTT-SEEEES--------------HHHHHCCHHHHHHHHHHGGG-GEEEEEEEEETEE
T ss_pred CCccEEEeCc-cCcHHHHHHHHHhCCCEEEeC--------------hHHhhchhHHHHHHHHcCcc-cEEEEEEeeeceE
Confidence 3467888775 445666777788899877665 56778999999999988652 23333333333
Q ss_pred -----CC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 236 -----PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 236 -----~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
|. ..+..++++.+++.|+..|.++.-.++++.. .+|++.++.+++.+++|||++|||.+.+|+.++.+.
T Consensus 136 v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~---G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~ 212 (229)
T PF00977_consen 136 VATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQ---GPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKA 212 (229)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---S--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHT
T ss_pred EEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcC---CCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHC
Confidence 33 2468899999999999999999888876544 478999999999999999999999999999998864
Q ss_pred cCcceeeeehHHhhC
Q 013813 308 TGCEGVLSAESLLEN 322 (436)
Q Consensus 308 tGaDgVmIGRgal~n 322 (436)
|+++|++|++++..
T Consensus 213 -G~~gvivg~al~~g 226 (229)
T PF00977_consen 213 -GIDGVIVGSALHEG 226 (229)
T ss_dssp -TECEEEESHHHHTT
T ss_pred -CCcEEEEehHhhCC
Confidence 99999999999764
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=103.46 Aligned_cols=201 Identities=20% Similarity=0.220 Sum_probs=129.4
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
+.||++||+.... +...-+.|.+.|...+.+-+-+. .+ +. +... .+.|..+||.-. |.+...+
T Consensus 70 ~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~-sl----Ee----va~~-~~~~~wfQlY~~~Dr~~~~~ 139 (367)
T PLN02493 70 SMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATS-SV----EE----VAST-GPGIRFFQLYVYKNRNVVEQ 139 (367)
T ss_pred cccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccC-CH----HH----HHhc-CCCCcEEEEeecCCHHHHHH
Confidence 3589999987532 34555566666766555443221 11 11 1111 235799999965 4555555
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhh---cCcccc-------cc----------------------cCChHHHHHHHHHH
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IAR---RGNYGA-------FL----------------------MDNLPLVKSLVEKL 220 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~---~~~~Gs-------~L----------------------l~~p~~v~eIv~av 220 (436)
..++++ .||.+|-|...+|.. +.. +.+|-. .+ .-++.+-=+-++++
T Consensus 140 li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wl 219 (367)
T PLN02493 140 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 219 (367)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 556665 499999998877773 111 111100 00 00111112446888
Q ss_pred hcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCH
Q 013813 221 ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHM 298 (436)
Q Consensus 221 ~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~ 298 (436)
++..++||.||- ... .+-++.+.++|+|+|.|.+.-..+.. ..++-.+.+.++++.+ ++||++.|||++.
T Consensus 220 r~~~~~PiivKg-----V~~-~~dA~~a~~~Gvd~I~VsnhGGrqld--~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G 291 (367)
T PLN02493 220 QTITKLPILVKG-----VLT-GEDARIAIQAGAAGIIVSNHGARQLD--YVPATISALEEVVKATQGRIPVFLDGGVRRG 291 (367)
T ss_pred HhccCCCEEeec-----CCC-HHHHHHHHHcCCCEEEECCCCCCCCC--CchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 988999999992 222 34577889999999999554332222 2244567788887765 5999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhh
Q 013813 299 EDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~ 321 (436)
.|+.++|.. ||++|+|||.++.
T Consensus 292 ~Dv~KALAL-GA~aV~iGr~~l~ 313 (367)
T PLN02493 292 TDVFKALAL-GASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHHHc-CCCEEEEcHHHHH
Confidence 999999997 9999999998774
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=99.30 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHH-----HHHHHHhcccCccEE--EEeccCCChh
Q 013813 167 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK-----SLVEKLALNLNVPVS--CKIRVFPNLQ 239 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~-----eIv~av~~~~~iPVs--VKiRlg~~~~ 239 (436)
.+.+++.++++.++.++|.||||+-||.... -|..+.+..+.+. ++++++++.+++|+. +|+.. -..
T Consensus 15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~a----dG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~--~~~ 88 (244)
T PRK13125 15 PNVESFKEFIIGLVELVDILELGIPPKYPKY----DGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED--YVD 88 (244)
T ss_pred CCHHHHHHHHHHHHhhCCEEEECCCCCCCCC----CCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch--hhh
Confidence 4789999999877655999999999988632 2566666677766 899999988889974 56443 234
Q ss_pred hHHHHHHHHHHcCccEEEeccCcc---c---------------------c---------------------cCCCCC---
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTR---D---------------------E---------------------KDGKKF--- 271 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~---~---------------------~---------------------~~~~~g--- 271 (436)
+..++++.+.++|+++|++|.-.. + + ..+..|
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~ 168 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPL 168 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCc
Confidence 667788888889999998874210 0 0 000111
Q ss_pred ccC-HHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 272 RAD-WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 272 ~ad-~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
..+ .+.++++++.. +.||+.-|||++.+++.++++. |||+|.+|++++.
T Consensus 169 ~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~-gaD~vvvGSai~~ 219 (244)
T PRK13125 169 PVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSA-GADGVVVGTAFIE 219 (244)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHc-CCCEEEECHHHHH
Confidence 112 34677777776 5899999999999999998886 9999999999875
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-08 Score=102.72 Aligned_cols=214 Identities=13% Similarity=0.087 Sum_probs=115.5
Q ss_pred HHHHhC-CCcEEEccCC-CCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC--CHH
Q 013813 96 HWTKLG-RPKLIVAPMV-DNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN--DPE 170 (436)
Q Consensus 96 ~~~~lg-~~~i~lAPM~-gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~--d~e 170 (436)
|.+.+| +.||++|||+ |+|+..+=..+.+.|. +.+-+..++...+.......+..+ ..++|+.|+|+.+ +++
T Consensus 6 f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~l---t~~~PfGVNL~~~~~~~~ 82 (418)
T cd04742 6 FKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAAL---GNGEPYGVNLIHSPDEPE 82 (418)
T ss_pred HHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhc---cCCCCeEEeeecCCCCch
Confidence 455566 7799999999 7999987666666664 444444444433322211111111 1278999999964 333
Q ss_pred HHHHHHHH-HcCCCcEEEEec-CCCc-hhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe-cc-------CCChh
Q 013813 171 ILLNAARR-VEPYCDYVDINL-GCPQ-RIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI-RV-------FPNLQ 239 (436)
Q Consensus 171 ~~~~AA~~-v~~g~D~IdLN~-GCP~-~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi-Rl-------g~~~~ 239 (436)
...+..++ ++.++..|+... +-+. ..++-...|-..-.+- +-.....|..|+ |. ++-..
T Consensus 83 ~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g----------~~~~~~~ViakVsr~evAs~~f~ppp~ 152 (418)
T cd04742 83 LEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADG----------RVQIANRIIAKVSRPEVAEAFMSPAPE 152 (418)
T ss_pred hHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccc----------cccccceEEEecCChhhhhhhcCCCCH
Confidence 33334444 456888877652 1111 0010000000000000 000012233332 11 11000
Q ss_pred h-----------HHHHHHHHHHcC-ccEEEeccCccccc-CCCCCccCHHHHHHHHhhC--------CCcEEEccCCCCH
Q 013813 240 D-----------TIKYAKMLEDAG-CSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL--------RIPVLANGNVRHM 298 (436)
Q Consensus 240 d-----------~~~~ak~le~aG-~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~--------~iPVianGGI~s~ 298 (436)
+ +.+-|+.+++.| +|.|++. ....+- ...+...-+..+..+++.+ ++||++.|||.|+
T Consensus 153 ~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg 231 (418)
T cd04742 153 RILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTP 231 (418)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCH
Confidence 0 234466777788 5999986 222211 1110011223344444444 6999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 299 EDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+++..++.. |||+|++|+.++.-++
T Consensus 232 ~~vaAA~al-GAd~V~~GT~flat~E 256 (418)
T cd04742 232 EAAAAAFAL-GADFIVTGSINQCTVE 256 (418)
T ss_pred HHHHHHHHc-CCcEEeeccHHHhCcc
Confidence 999999997 9999999999998776
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=99.95 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=113.7
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec-c--
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-V-- 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR-l-- 234 (436)
.++-+|+.|.- ....++.++++.|+|-|-+| +...++|+++.++.+...+.+ -+++-.| -
T Consensus 73 ~~~~v~vgGGI-rs~e~~~~~l~~Ga~~vvig--------------T~a~~~p~~~~~~~~~~g~~i--vvslD~k~~g~ 135 (243)
T TIGR01919 73 LVVVEELSGGR-RDDSSLRAALTGGRARVNGG--------------TAALENPWWAAAVIRYGGDIV--AVGLDVLEDGE 135 (243)
T ss_pred CCCCEEEcCCC-CCHHHHHHHHHcCCCEEEEC--------------chhhCCHHHHHHHHHHccccE--EEEEEEecCCc
Confidence 34668887742 33444445667788887554 556789999999988875443 3444443 1
Q ss_pred -------CCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHH-
Q 013813 235 -------FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC- 304 (436)
Q Consensus 235 -------g~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~- 304 (436)
||. ..+..++++.+++.|+..|.++...++++.. .+|++.++++++.+++|||++|||.|.+|+.++
T Consensus 136 ~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~---G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~ 212 (243)
T TIGR01919 136 WHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSG---GPNELLLEVVAARTDAIVAASGGSSLLDDLRAIK 212 (243)
T ss_pred eEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCC---CcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHH
Confidence 232 2367889999999999999999988886644 479999999999999999999999999999987
Q ss_pred -HHhcCcceeeeehHHhhCCccchh
Q 013813 305 -LEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 305 -l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
+...|++||++|++++.+---+.+
T Consensus 213 ~l~~~Gv~gvivg~Al~~g~i~~~~ 237 (243)
T TIGR01919 213 YLDEGGVSVAIGGKLLYARFFTLEA 237 (243)
T ss_pred hhccCCeeEEEEhHHHHcCCCCHHH
Confidence 334599999999999887644443
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-09 Score=104.49 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.|+++...+... ....+++.++++++.+++||++.|||+|.+|+++++.. ||+.|++|++
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~-Ga~~vivgt~ 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRA-GADKVSINTA 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc-CCCEEEEChh
Confidence 4788999999999999999999987643 22578999999999999999999999999999999985 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||+++.++..
T Consensus 106 ~~~~p~~~~~~~~ 118 (254)
T TIGR00735 106 AVKNPELIYELAD 118 (254)
T ss_pred HhhChHHHHHHHH
Confidence 9999999998764
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=97.11 Aligned_cols=127 Identities=19% Similarity=0.307 Sum_probs=93.0
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCCh--HHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNL--PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p--~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~a 251 (436)
++-..++.|+|.|-++..+ ..+| +.+.++++.+++..++++.+.+. + .+.+..+.+.
T Consensus 84 ~~~~a~~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~---t----~~ea~~a~~~ 142 (219)
T cd04729 84 EVDALAAAGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIS---T----LEEALNAAKL 142 (219)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECC---C----HHHHHHHHHc
Confidence 4444566799999888532 1122 26778888777655688888642 2 2235777889
Q ss_pred CccEEEe--ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 252 GCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 252 G~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|+|+|.+ ||++.... .....++++++.+++.+++||+++|||.+++++.++++. |||+|++|++++...+
T Consensus 143 G~d~i~~~~~g~t~~~~--~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~-GadgV~vGsal~~~~~ 214 (219)
T cd04729 143 GFDIIGTTLSGYTEETA--KTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALEL-GADAVVVGSAITRPEH 214 (219)
T ss_pred CCCEEEccCcccccccc--CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHC-CCCEEEEchHHhChHh
Confidence 9999965 56554322 122467899999999999999999999999999999996 8999999999765444
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-08 Score=99.22 Aligned_cols=136 Identities=12% Similarity=0.167 Sum_probs=112.8
Q ss_pred CCCCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEe
Q 013813 155 KEDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 232 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKi 232 (436)
....|+..|+++.+++++.+.++ .++.||+.|.||+|. +++...++++++++.+ ++++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~ 184 (316)
T cd03319 121 PRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDA 184 (316)
T ss_pred CCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeC
Confidence 35677888999999999887775 456699999999763 2345567778887766 48899999
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
+.+++.+++.++++.+++.|+.+| ++. .+ +.+|+.++++++.+++||++++.+.+.++++++++.+++|.
T Consensus 185 n~~~~~~~A~~~~~~l~~~~l~~i-------EeP--~~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~ 254 (316)
T cd03319 185 NQGWTPEEAVELLRELAELGVELI-------EQP--VP-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDG 254 (316)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEE-------ECC--CC-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCE
Confidence 999999999999999999999888 221 11 46899999999999999999999999999999999989999
Q ss_pred eeee
Q 013813 313 VLSA 316 (436)
Q Consensus 313 VmIG 316 (436)
|++-
T Consensus 255 v~~~ 258 (316)
T cd03319 255 INIK 258 (316)
T ss_pred EEEe
Confidence 9765
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=97.58 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=109.7
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC----
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---- 235 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg---- 235 (436)
+-+|++|. ...+.++.++++.|++.|-|| +...++|++++++.+...+. +-|++-.+-+
T Consensus 77 ~pi~vGGG-Irs~e~v~~~l~~Ga~kvvig--------------t~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~ 139 (234)
T PRK13587 77 KDIEVGGG-IRTKSQIMDYFAAGINYCIVG--------------TKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKV 139 (234)
T ss_pred CeEEEcCC-cCCHHHHHHHHHCCCCEEEEC--------------chHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEe
Confidence 34787664 344555666777888887554 56678999999999887543 3444444332
Q ss_pred --CC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 236 --PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 236 --~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
|. ..+..++++.+++.|+..|.+....++++.. .+|++.++++.+.+++||++.|||.|.+|+.++++ .|+
T Consensus 140 ~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~---G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~-~G~ 215 (234)
T PRK13587 140 NGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMS---GPNFELTGQLVKATTIPVIASGGIRHQQDIQRLAS-LNV 215 (234)
T ss_pred cCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCC---ccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCC
Confidence 32 2356889999999999999998887776543 47899999999999999999999999999999997 499
Q ss_pred ceeeeehHHhh
Q 013813 311 EGVLSAESLLE 321 (436)
Q Consensus 311 DgVmIGRgal~ 321 (436)
++|.+|++++.
T Consensus 216 ~~vivG~a~~~ 226 (234)
T PRK13587 216 HAAIIGKAAHQ 226 (234)
T ss_pred CEEEEhHHHHh
Confidence 99999999987
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-08 Score=102.37 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHhcccC-ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC------CCCCccCHHHHHH
Q 013813 208 DNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKA 280 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~------~~~g~ad~~~i~~ 280 (436)
.+++.+.++++++++..+ +||.+|+-.+. +..++++.++..|+|+|+|.|....... ...+.+-...+..
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~---~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH---GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC---CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 456778999999999987 99999965442 3446788888888999999765332100 0111222233444
Q ss_pred HHhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 281 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 281 ik~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+.+.+ ++||++.|||.+..|+.++|.. |||+|.+||++|.--.
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaL-GAd~V~ig~~~l~al~ 322 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALAL-GADAVGIGTAALIALG 322 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHc-CCCeeeechHHHHhcc
Confidence 44432 6999999999999999999997 9999999999986543
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=98.24 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=109.4
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-----
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF----- 235 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg----- 235 (436)
-+|+.|. ...+.++-+.++.|+|-|-|| +...++|+++.++ ....+. +-+++-.|-|
T Consensus 75 ~v~vGGG-Irs~e~~~~~l~~Ga~rvvig--------------T~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~~~ 136 (241)
T PRK14114 75 HIQIGGG-IRSLDYAEKLRKLGYRRQIVS--------------SKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVAFK 136 (241)
T ss_pred cEEEecC-CCCHHHHHHHHHCCCCEEEEC--------------chhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEeeC
Confidence 4688664 333445556667788887554 5567899999999 444332 4555555433
Q ss_pred -CC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc---
Q 013813 236 -PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET--- 308 (436)
Q Consensus 236 -~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t--- 308 (436)
|. .-+..++++.+++.|+..|++....++++.. .+|++.++++++.+++|||++|||.|.+|+.++.+..
T Consensus 137 gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~---G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~ 213 (241)
T PRK14114 137 GWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQ---EHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRET 213 (241)
T ss_pred CCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCC---CcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhccccc
Confidence 21 2357899999999999999999888776543 4799999999999999999999999999999988742
Q ss_pred -C-cceeeeehHHhhCCccc
Q 013813 309 -G-CEGVLSAESLLENPALF 326 (436)
Q Consensus 309 -G-aDgVmIGRgal~nP~lf 326 (436)
| ++||.+|++++.+---+
T Consensus 214 ~g~v~gvivg~Al~~g~i~~ 233 (241)
T PRK14114 214 NGLLKGVIVGRAFLEGILTV 233 (241)
T ss_pred CCcEEEEEEehHHHCCCCCH
Confidence 4 99999999998765433
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-09 Score=100.14 Aligned_cols=89 Identities=26% Similarity=0.421 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.|+|+..+.... ....++++++++++.+++||+++|||++.++++++++. |||.|++|++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~-Gad~vvigs~ 104 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDL-GVSRVIIGTA 104 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHc-CCCEEEECch
Confidence 5788999999999999999998876421 12578999999999999999999999999999999985 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||+++.++..
T Consensus 105 ~l~dp~~~~~i~~ 117 (234)
T cd04732 105 AVKNPELVKELLK 117 (234)
T ss_pred HHhChHHHHHHHH
Confidence 9999999988765
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=94.83 Aligned_cols=122 Identities=18% Similarity=0.267 Sum_probs=87.6
Q ss_pred HHHHcCCCcEEEEecCCCchhhhcCcccccccCCh--HHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 176 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNL--PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 176 A~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p--~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
-...+.|+|.|-+.. |. ...| +.+.++++.+++..++++.+.+. +.+ -++.+.+.|+
T Consensus 82 ~~a~~aGad~I~~d~--~~------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~---t~e----e~~~a~~~G~ 140 (221)
T PRK01130 82 DALAAAGADIIALDA--TL------------RPRPDGETLAELVKRIKEYPGQLLMADCS---TLE----EGLAAQKLGF 140 (221)
T ss_pred HHHHHcCCCEEEEeC--CC------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCC---CHH----HHHHHHHcCC
Confidence 344567999887753 11 1112 55677888877645778877632 222 3567889999
Q ss_pred cEEEec--cCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 254 SLLAVH--GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 254 d~I~VH--gRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
|+|.++ |.+.... .....+++.++++++.+++||++.|||.+++++.++++. |+|+|++|++++.
T Consensus 141 d~i~~~~~g~t~~~~--~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~-GadgV~iGsai~~ 207 (221)
T PRK01130 141 DFIGTTLSGYTEETK--KPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALEL-GAHAVVVGGAITR 207 (221)
T ss_pred CEEEcCCceeecCCC--CCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHC-CCCEEEEchHhcC
Confidence 999774 3332211 122457899999999999999999999999999999985 8999999998765
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-08 Score=95.04 Aligned_cols=142 Identities=19% Similarity=0.148 Sum_probs=109.8
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC----
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---- 235 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg---- 235 (436)
+-+|++|. ...+.++.+++..|++.|-|| +...++ +++.++++...+. .+-+++-++-+
T Consensus 79 ~~v~vgGG-ir~~edv~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~ 141 (233)
T cd04723 79 LGLWVDGG-IRSLENAQEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLK 141 (233)
T ss_pred CCEEEecC-cCCHHHHHHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeecc
Confidence 44787763 344566666777888887665 445667 8999999988541 34455555444
Q ss_pred -CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 -PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 -~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
....+..++++.+++. ++.+++.......... ..|++.++++.+.+++||++.|||.|.+|++++++. |+++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~---g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~-G~~~vi 216 (233)
T cd04723 142 PTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQ---GPDLELLERLAARADIPVIAAGGVRSVEDLELLKKL-GASGAL 216 (233)
T ss_pred ccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCC---CcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHc-CCCEEE
Confidence 2345678899999999 9999998877765432 578999999999999999999999999999999986 999999
Q ss_pred eehHHhhCC
Q 013813 315 SAESLLENP 323 (436)
Q Consensus 315 IGRgal~nP 323 (436)
+|++++.+-
T Consensus 217 vGsal~~g~ 225 (233)
T cd04723 217 VASALHDGG 225 (233)
T ss_pred EehHHHcCC
Confidence 999998774
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-07 Score=93.27 Aligned_cols=134 Identities=22% Similarity=0.331 Sum_probs=90.4
Q ss_pred HHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 177 RRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 177 ~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
+++++ |+-+|--=---|......| |-+=+++|+.+.+|.+ .+++||.-|+|.|. ..-++.|+++|+|.
T Consensus 24 ~iae~aga~avm~le~~p~d~r~~g--gv~R~~~p~~I~~I~~----~V~iPVig~~kigh-----~~Ea~~L~~~GvDi 92 (287)
T TIGR00343 24 KIAEEAGAVAVMALERVPADIRASG--GVARMSDPKMIKEIMD----AVSIPVMAKVRIGH-----FVEAQILEALGVDY 92 (287)
T ss_pred HHHHHcCceEEEeeccCchhhHhcC--CeeecCCHHHHHHHHH----hCCCCEEEEeeccH-----HHHHHHHHHcCCCE
Confidence 34433 5433322223566553333 7888999988776654 45899999999864 22355566666666
Q ss_pred EEec-----------------------------------------------cCccc------------------------
Q 013813 256 LAVH-----------------------------------------------GRTRD------------------------ 264 (436)
Q Consensus 256 I~VH-----------------------------------------------gRt~~------------------------ 264 (436)
|.-+ |.|.+
T Consensus 93 IDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~ 172 (287)
T TIGR00343 93 IDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEE 172 (287)
T ss_pred EEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccch
Confidence 6431 11111
Q ss_pred -cc--CCCCCccCHHHHHHHHhhCCCcEE--EccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 265 -EK--DGKKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 265 -~~--~~~~g~ad~~~i~~ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+. ......++++.++++++..++||+ +.|||.|++++..+++. |||+|++|+++...
T Consensus 173 ~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~mel-GAdGVaVGSaI~ks 234 (287)
T TIGR00343 173 EDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQL-GADGVFVGSGIFKS 234 (287)
T ss_pred hHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHc-CCCEEEEhHHhhcC
Confidence 00 000013688999999998899998 99999999999999985 99999999999853
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.1e-08 Score=100.90 Aligned_cols=198 Identities=21% Similarity=0.240 Sum_probs=120.3
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhh--ccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHH
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIF--TESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARR 178 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l--~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~ 178 (436)
+-|++-|||-.+|+..+-....+.|. +++.-+|...+.. ...-+............+-++.--.|..++++..+..+
T Consensus 37 ~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L 116 (352)
T PF00478_consen 37 KIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEAL 116 (352)
T ss_dssp SSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHH
T ss_pred cCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHH
Confidence 45999999999999988776566654 6666555422211 00001000001112233333333335555678888888
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
+++|+|.|-|... .+ .-+.+.+.++.+++... +||.+. +. -+.+-++.|.++|+|.|-
T Consensus 117 ~~agvD~ivID~a-------~g--------~s~~~~~~ik~ik~~~~~~~viaG-----NV-~T~e~a~~L~~aGad~vk 175 (352)
T PF00478_consen 117 VEAGVDVIVIDSA-------HG--------HSEHVIDMIKKIKKKFPDVPVIAG-----NV-VTYEGAKDLIDAGADAVK 175 (352)
T ss_dssp HHTT-SEEEEE-S-------ST--------TSHHHHHHHHHHHHHSTTSEEEEE-----EE--SHHHHHHHHHTT-SEEE
T ss_pred HHcCCCEEEcccc-------Cc--------cHHHHHHHHHHHHHhCCCceEEec-----cc-CCHHHHHHHHHcCCCEEE
Confidence 8899999877621 11 24667788889988875 888877 22 224557778899999998
Q ss_pred ec---cCccccc-CCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 258 VH---GRTRDEK-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 258 VH---gRt~~~~-~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
|- |..+..+ ..+-|.+.+..|.++++ ..++|||+-|||++.-|+.++|.. |||.||+|+-+-.
T Consensus 176 VGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~-GAd~VMlG~llAg 245 (352)
T PF00478_consen 176 VGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAA-GADAVMLGSLLAG 245 (352)
T ss_dssp ESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHT-T-SEEEESTTTTT
T ss_pred EeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeee-cccceeechhhcc
Confidence 83 1111100 11122345555655554 457999999999999999999986 9999999986643
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=92.96 Aligned_cols=129 Identities=19% Similarity=0.287 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED 250 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~ 250 (436)
.+.++-.+++.|+|.|-|.+- .-.+|+.+.++++.+++.. ..+..-|.. ++-+..+.+
T Consensus 53 T~~ev~~l~~aGadIIAlDaT--------------~R~Rp~~l~~li~~i~~~~-~l~MADist-------~ee~~~A~~ 110 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDAT--------------DRPRPETLEELIREIKEKY-QLVMADIST-------LEEAINAAE 110 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-S--------------SSS-SS-HHHHHHHHHHCT-SEEEEE-SS-------HHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEecC--------------CCCCCcCHHHHHHHHHHhC-cEEeeecCC-------HHHHHHHHH
Confidence 466677788899999988741 1235678999999999887 777777532 333667889
Q ss_pred cCccEE--EeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 251 AGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 251 aG~d~I--~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
+|+|.| ++.|.|..... ..+||++++++++. ++|||+-|+|+|++++.++|+. ||++|.|| +++.+|++..
T Consensus 111 ~G~D~I~TTLsGYT~~t~~---~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~-GA~aVVVG-sAITrP~~It 183 (192)
T PF04131_consen 111 LGFDIIGTTLSGYTPYTKG---DGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALEL-GAHAVVVG-SAITRPQEIT 183 (192)
T ss_dssp TT-SEEE-TTTTSSTTSTT---SSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHT-T-SEEEE--HHHH-HHHHH
T ss_pred cCCCEEEcccccCCCCCCC---CCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhc-CCeEEEEC-cccCCHHHHH
Confidence 999999 56677765433 36799999999986 9999999999999999999996 99999999 4557777544
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.8e-08 Score=94.07 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=122.7
Q ss_pred CCCCcHHHHHHHHHhCCC-eEEeCcccchh-----hcc-ChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCC
Q 013813 111 VDNSELPFRMLCRRYGAE-AAYTPMLHSRI-----FTE-SEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYC 183 (436)
Q Consensus 111 ~gvtd~~fR~l~~~~Ga~-l~~Temisa~~-----l~~-~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~ 183 (436)
++|++..--+++.+.||- ...-|-+.+.. ..+ +........+. .-+.|++-=+ - ..-+.++-.+++.|+
T Consensus 13 ~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~-~V~iPVIGi~-K--~~~~~Ea~~L~eaGv 88 (283)
T cd04727 13 MDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMD-AVSIPVMAKV-R--IGHFVEAQILEALGV 88 (283)
T ss_pred EEeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHH-hCCCCeEEee-e--hhHHHHHHHHHHcCC
Confidence 578888888899999984 45545444332 211 11111111221 2356765322 1 222777777778899
Q ss_pred cEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEE--EeccC
Q 013813 184 DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL--AVHGR 261 (436)
Q Consensus 184 D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I--~VHgR 261 (436)
|.|| |-. -.+| +.+++..++...+.|+.+.++. .+ -+....+.|+|.| ++.|.
T Consensus 89 DiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~st---le----Eal~a~~~Gad~I~TTl~gy 143 (283)
T cd04727 89 DMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGARN---LG----EALRRISEGAAMIRTKGEAG 143 (283)
T ss_pred CEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCCC---HH----HHHHHHHCCCCEEEecCCCC
Confidence 9996 211 1223 5778888888779999988664 22 3566778999999 45455
Q ss_pred ccc------------------------ccC--CCCCccCHHHHHHHHhhCCCcEE--EccCCCCHHHHHHHHHhcCccee
Q 013813 262 TRD------------------------EKD--GKKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 262 t~~------------------------~~~--~~~g~ad~~~i~~ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgV 313 (436)
|.. ... .....++|+.++++++..++||+ +.|||.+++++.++++. |||+|
T Consensus 144 T~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~-GAdgV 222 (283)
T cd04727 144 TGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQL-GADGV 222 (283)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHc-CCCEE
Confidence 553 100 11125799999999999999997 99999999999999985 99999
Q ss_pred eeehHHhhCC
Q 013813 314 LSAESLLENP 323 (436)
Q Consensus 314 mIGRgal~nP 323 (436)
++|++++.-+
T Consensus 223 aVGSAI~~a~ 232 (283)
T cd04727 223 FVGSGIFKSE 232 (283)
T ss_pred EEcHHhhcCC
Confidence 9999998644
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-07 Score=84.72 Aligned_cols=143 Identities=18% Similarity=0.284 Sum_probs=108.9
Q ss_pred CCCEEEEecCCC----HHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEE
Q 013813 157 DRPLFVQFCAND----PEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS 229 (436)
Q Consensus 157 e~plivQL~g~d----~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVs 229 (436)
..|+++++..++ .++..+.++.+ +.|+|+|.+.. |. +.....+.+.+.+.++++.+.+ ++|+.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI--------GSLKEGDWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH--------HHHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 578999999988 77777777655 55999999852 22 1111115788888888888874 89999
Q ss_pred EEeccCC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH
Q 013813 230 CKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 230 VKiRlg~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l 305 (436)
++...+. +.+...++++.+.+.|++.|..+..... +..+++.++.+++.. ++||+..||+.+++.+..++
T Consensus 118 iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~------~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~ 191 (201)
T cd00945 118 VILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG------GGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAI 191 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC------CCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHH
Confidence 9988654 3456667777788999999977643221 245788899998877 67999999999999999999
Q ss_pred HhcCcceeeee
Q 013813 306 EETGCEGVLSA 316 (436)
Q Consensus 306 ~~tGaDgVmIG 316 (436)
.. ||+|+++|
T Consensus 192 ~~-Ga~g~~~g 201 (201)
T cd00945 192 EA-GADGIGTS 201 (201)
T ss_pred Hh-ccceeecC
Confidence 87 99999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-08 Score=93.36 Aligned_cols=134 Identities=21% Similarity=0.291 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc----------
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV---------- 234 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl---------- 234 (436)
|.....+..+-+++..|+|-|-|| ++-+.+|+++.++-+.....+ -+-+..|-+.
T Consensus 80 GGGI~s~eD~~~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~ 145 (256)
T COG0107 80 GGGIRSVEDARKLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVF 145 (256)
T ss_pred cCCcCCHHHHHHHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEE
Confidence 566666777778899999999999 334678999999988876654 2334444432
Q ss_pred ---CC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 235 ---FP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 235 ---g~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tG 309 (436)
|. +--+++++++.+++.|+..|.+....+++... .+|+++++.+++.+++|||++||..++++..+.+..+.
T Consensus 146 ~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~---GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~ 222 (256)
T COG0107 146 THGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKA---GYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGK 222 (256)
T ss_pred ecCCCcCCCcCHHHHHHHHHHcCCceEEEeeeccccccc---CcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcC
Confidence 21 22478999999999999999998887775543 58999999999999999999999999999999999988
Q ss_pred cceeeee
Q 013813 310 CEGVLSA 316 (436)
Q Consensus 310 aDgVmIG 316 (436)
||++..+
T Consensus 223 adAaLAA 229 (256)
T COG0107 223 ADAALAA 229 (256)
T ss_pred ccHHHhh
Confidence 9988655
|
|
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-07 Score=96.53 Aligned_cols=207 Identities=13% Similarity=0.095 Sum_probs=113.7
Q ss_pred HHHHhC-CCcEEEccCC-CCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCC-EEEEecCCCH--
Q 013813 96 HWTKLG-RPKLIVAPMV-DNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRP-LFVQFCANDP-- 169 (436)
Q Consensus 96 ~~~~lg-~~~i~lAPM~-gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~p-livQL~g~d~-- 169 (436)
|.+.+| +.||++|||+ |+|+..+=..+.+.|. +.+-+..++...+.......+... .+.| +.|+|+.+..
T Consensus 11 f~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~----~~~p~fGVNL~~~~~~~ 86 (444)
T TIGR02814 11 FREDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQAL----PGGPAYGVNLIHSPSDP 86 (444)
T ss_pred HHHHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhc----CCCCceEEEecccCCCc
Confidence 555566 7799999999 7999987666666664 444444444333322211111111 2335 9999997642
Q ss_pred HHHHHHHHH-HcCCCcEEEEecC---CCchhh-hc-----Ccccc-----cc-c--CChHHHHH--------HHHHHhcc
Q 013813 170 EILLNAARR-VEPYCDYVDINLG---CPQRIA-RR-----GNYGA-----FL-M--DNLPLVKS--------LVEKLALN 223 (436)
Q Consensus 170 e~~~~AA~~-v~~g~D~IdLN~G---CP~~~~-~~-----~~~Gs-----~L-l--~~p~~v~e--------Iv~av~~~ 223 (436)
+.-.+..++ ++.++..|+...+ .|.-.. +. +..|. .+ . .+++.+.. +|+.+.+.
T Consensus 87 ~~e~~~v~l~l~~~V~~veasa~~~~~p~~v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~ 166 (444)
T TIGR02814 87 ALEWGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAE 166 (444)
T ss_pred ccHHHHHHHHHHcCCCEEEeccccCCCcchhhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHc
Confidence 222233343 4567888877632 333111 11 00110 00 0 12222211 22222111
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcC-ccEEEeccCcccccCCCCCccCHHHHHHH---HhhC--------CCcEEE
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAV---KNAL--------RIPVLA 291 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~~~~g~ad~~~i~~i---k~~~--------~iPVia 291 (436)
++- +.+-|+.+++.| +|.|++. ....+-.+. ...+.++..| ++.+ ++||++
T Consensus 167 -G~i-------------t~eEA~~a~~~g~aD~Ivve-~EAGGHtg~--~~~~~Llp~i~~lrd~v~~~~~y~~~VpViA 229 (444)
T TIGR02814 167 -GRI-------------TREEAELARRVPVADDICVE-ADSGGHTDN--RPLVVLLPAIIRLRDTLMRRYGYRKPIRVGA 229 (444)
T ss_pred -CCC-------------CHHHHHHHHhCCCCcEEEEe-ccCCCCCCC--CcHHHHHHHHHHHHHHHhhcccCCCCceEEE
Confidence 000 223356677787 5888874 222111010 1223444444 4444 689999
Q ss_pred ccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 292 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 292 nGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.|||.|++++..+|.. |||+|++|+.++.-++
T Consensus 230 AGGI~t~~~vaAAlaL-GAdgV~~GT~flat~E 261 (444)
T TIGR02814 230 AGGIGTPEAAAAAFML-GADFIVTGSVNQCTVE 261 (444)
T ss_pred eCCCCCHHHHHHHHHc-CCcEEEeccHHHhCcc
Confidence 9999999999999987 9999999999988776
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-07 Score=86.16 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=99.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+.|++++=++.++. ++....+.|+|+|-|.. .. + .++.+.++++.... .++.+.+-+.
T Consensus 72 ~iPi~~~~~i~~~~---~v~~~~~~Gad~v~l~~-------------~~-~-~~~~~~~~~~~~~~-~g~~~~v~v~--- 129 (217)
T cd00331 72 SLPVLRKDFIIDPY---QIYEARAAGADAVLLIV-------------AA-L-DDEQLKELYELARE-LGMEVLVEVH--- 129 (217)
T ss_pred CCCEEECCeecCHH---HHHHHHHcCCCEEEEee-------------cc-C-CHHHHHHHHHHHHH-cCCeEEEEEC---
Confidence 57877654445554 33344567999988762 11 1 23677777776643 4555555543
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+.++ ++.+.+.|++.+.+++++.... ..+++.+.++++. .++||++.|||.+++|+.++++. |+|+|+
T Consensus 130 ~~~e----~~~~~~~g~~~i~~t~~~~~~~-----~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~-Ga~gvi 199 (217)
T cd00331 130 DEEE----LERALALGAKIIGINNRDLKTF-----EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEA-GADAVL 199 (217)
T ss_pred CHHH----HHHHHHcCCCEEEEeCCCcccc-----CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHc-CCCEEE
Confidence 2233 5566789999999997764321 4667889999887 47999999999999999999986 999999
Q ss_pred eehHHhhCCccch
Q 013813 315 SAESLLENPALFA 327 (436)
Q Consensus 315 IGRgal~nP~lf~ 327 (436)
+|++++..++.-.
T Consensus 200 vGsai~~~~~p~~ 212 (217)
T cd00331 200 IGESLMRAPDPGA 212 (217)
T ss_pred ECHHHcCCCCHHH
Confidence 9999998776543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=96.78 Aligned_cols=190 Identities=17% Similarity=0.225 Sum_probs=114.0
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCH-----------
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDP----------- 169 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~----------- 169 (436)
+.||+++||.++|+..+-..+.+.|. +..-.-.+....+.......+. ..++|..++.+++.+
T Consensus 14 ~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~-----~~~~p~~~~~f~~~~~~v~~~~l~~~ 88 (336)
T COG2070 14 KYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRA-----LTDKPFVANNFGSAPAPVNVNILVAR 88 (336)
T ss_pred cCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHH-----hcCCcchhcccccccccchhheeccc
Confidence 67999999999999988776666654 3111111111112111111111 234555555555332
Q ss_pred -HHHHHHHHH-HcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 170 -EILLNAARR-VEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 170 -e~~~~AA~~-v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
+.+.+.... ++. +.-.+-..+|= .| .+.++.++. .+..|.+++- +...++
T Consensus 89 ~~~~~~~~~~ii~~~~vpvv~~~~g~----------------~~---~~~i~~~~~-~g~~v~~~v~-------~~~~A~ 141 (336)
T COG2070 89 RNAAEAGVDAIIEGAGVPVVSTSFGA----------------PP---AEFVARLKA-AGIKVIHSVI-------TVREAL 141 (336)
T ss_pred ccchHHhhhhHHhcCCCCEEeccCCC----------------Cc---HHHHHHHHH-cCCeEEEEeC-------CHHHHH
Confidence 222222221 222 23333333221 11 233444443 4667777632 246788
Q ss_pred HHHHcCccEEEeccCcccccCCC--CCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~~--~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
.+++.|+|.|+++|-...+-.+. ....-..++.++++.++ ||||+.|||.+.+++..+|.. |||+|.+|+.++.-.
T Consensus 142 ~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlal-GA~gVq~GT~Fl~t~ 220 (336)
T COG2070 142 KAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALAL-GADGVQMGTRFLATK 220 (336)
T ss_pred HHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHh-ccHHHHhhhhhhccc
Confidence 99999999999987765432221 01223577899999999 999999999999999999997 999999999998766
Q ss_pred c
Q 013813 324 A 324 (436)
Q Consensus 324 ~ 324 (436)
+
T Consensus 221 E 221 (336)
T COG2070 221 E 221 (336)
T ss_pred c
Confidence 5
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=91.31 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=105.0
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec-c------
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-V------ 234 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR-l------ 234 (436)
+|+.|. ...+.++.++++.|++-|-|| +...++|+++.++.+..... .+-+++-.| -
T Consensus 76 v~vGGG-Irs~e~~~~~l~~Ga~kvvig--------------t~a~~~p~~~~~~~~~~g~~-~ivvslD~~~~~~v~~~ 139 (232)
T PRK13586 76 IQVGGG-IRDIEKAKRLLSLDVNALVFS--------------TIVFTNFNLFHDIVREIGSN-RVLVSIDYDNTKRVLIR 139 (232)
T ss_pred EEEeCC-cCCHHHHHHHHHCCCCEEEEC--------------chhhCCHHHHHHHHHHhCCC-CEEEEEEcCCCCEEEcc
Confidence 788664 223344455666788887554 56778999999999888322 234444442 1
Q ss_pred CCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 235 FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 235 g~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
||. ..+..++++.+++.|+..|.++.-.++++.. .+|++.++.+++. ..|++++|||.+.+|+.++.+. |+++
T Consensus 140 gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~---G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~-G~~g 214 (232)
T PRK13586 140 GWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTK---GIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNV-GFDY 214 (232)
T ss_pred CCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCc---CcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHC-CCCE
Confidence 232 2256789999999999999999988886544 4799999999876 4569999999999999998864 9999
Q ss_pred eeeehHHhhC
Q 013813 313 VLSAESLLEN 322 (436)
Q Consensus 313 VmIGRgal~n 322 (436)
|.+|++++.+
T Consensus 215 vivg~Aly~g 224 (232)
T PRK13586 215 IIVGMAFYLG 224 (232)
T ss_pred EEEehhhhcC
Confidence 9999999854
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.2e-07 Score=89.87 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=122.3
Q ss_pred CcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-
Q 013813 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP- 181 (436)
Q Consensus 103 ~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~- 181 (436)
-|++-|.|-.+++..+-....++|.=.+.=-+++.... ..+.+. .. .+....+.+. .|-.++++.++..++++
T Consensus 46 iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~e~~---~~~v~~-~~-~~~~~~~~vs-vG~~~~d~er~~~L~~a~ 119 (343)
T TIGR01305 46 VPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEW---KAFATN-SS-PDCLQNVAVS-SGSSDNDLEKMTSILEAV 119 (343)
T ss_pred CceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCHHHH---HHHHHh-hc-ccccceEEEE-eccCHHHHHHHHHHHhcC
Confidence 48999999999999887766666653332222221111 111111 01 0122345564 46678889999988887
Q ss_pred -CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec-
Q 013813 182 -YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH- 259 (436)
Q Consensus 182 -g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH- 259 (436)
+.|.|-|... .| +-+.+.+.++++++...-+..+|=.+ . +.+-++.|.++|+|.|.|.
T Consensus 120 ~~~d~iviD~A-------hG--------hs~~~i~~ik~ir~~~p~~~viaGNV----~-T~e~a~~Li~aGAD~ikVgi 179 (343)
T TIGR01305 120 PQLKFICLDVA-------NG--------YSEHFVEFVKLVREAFPEHTIMAGNV----V-TGEMVEELILSGADIVKVGI 179 (343)
T ss_pred CCCCEEEEECC-------CC--------cHHHHHHHHHHHHhhCCCCeEEEecc----c-CHHHHHHHHHcCCCEEEEcc
Confidence 4898877732 11 34678899999999886566666222 1 2234667888999999874
Q ss_pred --cCccccc-CCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 260 --GRTRDEK-DGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 260 --gRt~~~~-~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
|..+..+ ....+.+.+..+.++++.. ++|||+-|||++..|+.++|.. |||+||+|.-
T Consensus 180 GpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~-GAd~VMlG~l 243 (343)
T TIGR01305 180 GPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGA-GADFVMLGGM 243 (343)
T ss_pred cCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHc-CCCEEEECHh
Confidence 1111111 1122235677777777654 6899999999999999999986 9999999933
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-07 Score=98.44 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=109.8
Q ss_pred EEEEecCCC--HHH--------HHHHHHHHcCCCcEEEEecC---CCchhhhcCcccccccCChHHHHHHHHHHhcc-cC
Q 013813 160 LFVQFCAND--PEI--------LLNAARRVEPYCDYVDINLG---CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LN 225 (436)
Q Consensus 160 livQL~g~d--~e~--------~~~AA~~v~~g~D~IdLN~G---CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~ 225 (436)
+=+|++|.= .++ +..+.+++..|+|-|-||-. -|-. -|-+.-..+|+++.++.+...+. +-
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~-----~~~~~~~~~p~~i~~~~~~fg~q~iv 389 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEE-----YIASGVKTGKTSIEQISRVYGNQAVV 389 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhh-----hhccccccCHHHHHHHHHHcCCceEE
Confidence 447888753 323 46666788999999999942 1211 11222456799999999987544 21
Q ss_pred ccEE---------------------------------EEeccCC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCC
Q 013813 226 VPVS---------------------------------CKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 270 (436)
Q Consensus 226 iPVs---------------------------------VKiRlg~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~ 270 (436)
+-|. |.+.-+. +.-+++++++.+++.|+..|.+....++++..
T Consensus 390 vsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~-- 467 (538)
T PLN02617 390 VSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGK-- 467 (538)
T ss_pred EEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccccccc--
Confidence 1111 2211211 23477899999999999999999888876543
Q ss_pred CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 271 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 271 g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+|+++++.+++.+++|||++||+.+++|+.++++.+|+|+++.|
T Consensus 468 -G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa 512 (538)
T PLN02617 468 -GFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAA 512 (538)
T ss_pred -CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEE
Confidence 489999999999999999999999999999999998899999988
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-07 Score=86.89 Aligned_cols=132 Identities=16% Similarity=0.121 Sum_probs=93.4
Q ss_pred EEecCC--CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----
Q 013813 162 VQFCAN--DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 234 (436)
Q Consensus 162 vQL~g~--d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl----- 234 (436)
+|++|. +.++..+....+ .+++-|-| |+..+++|+++.++.. -+++-.+-
T Consensus 80 v~vgGGirs~e~~~~~~~~l-~~a~rvvi--------------gT~a~~~p~~l~~~~~--------vvslD~~~g~v~~ 136 (221)
T TIGR00734 80 LIADCGVRSPEDLETLPFTL-EFASRVVV--------------ATETLDITELLRECYT--------VVSLDFKEKFLDA 136 (221)
T ss_pred EEEcCccCCHHHHHHHHhhh-ccceEEee--------------cChhhCCHHHHHHhhh--------EEEEEeECCcccc
Confidence 888774 455544443222 23666644 4566789998887751 23333221
Q ss_pred -CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 235 -FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 235 -g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+|. +...++.+.+...|+ .+.+..-.++++.. .+|++.++++++.+++||++.|||.|.+|+.++.+. |+|+|
T Consensus 137 ~g~~-~~~~~~~~~~~~~g~-~ii~tdI~~dGt~~---G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~-Ga~~v 210 (221)
T TIGR00734 137 SGLF-ESLEEVRDFLNSFDY-GLIVLDIHSVGTMK---GPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEM-GVSAV 210 (221)
T ss_pred cccc-ccHHHHHHHHHhcCC-EEEEEECCccccCC---CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHC-CCCEE
Confidence 332 356677778888998 77776666654322 479999999999999999999999999999997764 99999
Q ss_pred eeehHHhhC
Q 013813 314 LSAESLLEN 322 (436)
Q Consensus 314 mIGRgal~n 322 (436)
++|++++..
T Consensus 211 ivgsal~~g 219 (221)
T TIGR00734 211 LVATAVHKG 219 (221)
T ss_pred EEhHHhhCC
Confidence 999998754
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-07 Score=97.10 Aligned_cols=143 Identities=24% Similarity=0.265 Sum_probs=97.7
Q ss_pred CCEEE-EecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFV-QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~pliv-QL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
..|.| =..|..++++..+..+++.|+|.|.|++. + | +...+.+.++++++.. +++|.++ -.
T Consensus 228 GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a--~-----G--------~s~~~~~~i~~ik~~~~~~~v~aG--~V 290 (495)
T PTZ00314 228 GQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSS--Q-----G--------NSIYQIDMIKKLKSNYPHVDIIAG--NV 290 (495)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecC--C-----C--------CchHHHHHHHHHHhhCCCceEEEC--Cc
Confidence 34444 45566788888888888999999999963 1 1 2234567788888775 6777775 11
Q ss_pred CChhhHHHHHHHHHHcCccEEEec---cCccccc-CCCCCccCHHHHHHHH---hhCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVH---GRTRDEK-DGKKFRADWNAIKAVK---NALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VH---gRt~~~~-~~~~g~ad~~~i~~ik---~~~~iPVianGGI~s~eda~~~l~~t 308 (436)
.+ .+-++.+.++|+|+|.|- |.++... ....|.+.+..+..++ +..++|||+.|||.++.|+.+++..
T Consensus 291 ~t----~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~- 365 (495)
T PTZ00314 291 VT----ADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALAL- 365 (495)
T ss_pred CC----HHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHc-
Confidence 22 234667889999999762 2222111 1112234555554444 4458999999999999999999996
Q ss_pred CcceeeeehHHhhC
Q 013813 309 GCEGVLSAESLLEN 322 (436)
Q Consensus 309 GaDgVmIGRgal~n 322 (436)
|||+||+|+.+..-
T Consensus 366 GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 366 GADCVMLGSLLAGT 379 (495)
T ss_pred CCCEEEECchhccc
Confidence 99999999987553
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-08 Score=92.89 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+++++|+...+.|+|.|++-..|+.... . ..+++.++++++.+.||+...|||+|.+|+.++|.. |||-|.|.
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~~g-r--~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~a-GADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASSEG-R--ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRA-GADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccccccc-c--hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHc-CCCeeeeC
Confidence 4568899999999999999999888876422 1 467899999999999999999999999999999996 99999999
Q ss_pred hHHhhCCccchhhh
Q 013813 317 ESLLENPALFAGFR 330 (436)
Q Consensus 317 Rgal~nP~lf~~i~ 330 (436)
++++.||.+..++.
T Consensus 104 saAv~~p~lI~~~a 117 (256)
T COG0107 104 SAAVKDPELITEAA 117 (256)
T ss_pred hhHhcChHHHHHHH
Confidence 99999999988765
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=88.32 Aligned_cols=191 Identities=15% Similarity=0.154 Sum_probs=124.1
Q ss_pred CcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc--
Q 013813 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE-- 180 (436)
Q Consensus 103 ~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~-- 180 (436)
-|++-|+|-.+++..+-....++|.-.+.=-+++.... ..+.+. .+. .....+.|.+ |-.++++.++.++++
T Consensus 47 iPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~~e~~---~~fv~~-~~~-~~~~~~~vav-G~~~~d~er~~~L~~~~ 120 (346)
T PRK05096 47 VPIIAANMDTVGTFEMAKALASFDILTAVHKHYSVEEW---AAFVNN-SSA-DVLKHVMVST-GTSDADFEKTKQILALS 120 (346)
T ss_pred CceEecCCCccccHHHHHHHHHCCCeEEEecCCCHHHH---HHHHHh-ccc-cccceEEEEe-cCCHHHHHHHHHHHhcC
Confidence 49999999999999777766666653322221211111 111100 110 1113455644 556788999998887
Q ss_pred CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 181 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 181 ~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
+++|.|-|... .| +-+.+.++++.+++.. +++|.+. +.. +.+-++.|.++|+|.|-|-
T Consensus 121 ~g~D~iviD~A-------hG--------hs~~~i~~ik~ik~~~P~~~vIaG-----NV~-T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 121 PALNFICIDVA-------NG--------YSEHFVQFVAKAREAWPDKTICAG-----NVV-TGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCCCEEEEECC-------CC--------cHHHHHHHHHHHHHhCCCCcEEEe-----ccc-CHHHHHHHHHcCCCEEEEc
Confidence 48899888732 11 3477889999999876 5777665 222 2346778889999999762
Q ss_pred ---c---CcccccCCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 260 ---G---RTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 260 ---g---Rt~~~~~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
| -|+. ..+-|.+.+..|.++++ ..++|||+-|||.+.-|+.+.|.. |||.||+|+-+-..-
T Consensus 180 IGpGSiCtTr~--vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaa-GAd~VMlGsllAGt~ 249 (346)
T PRK05096 180 IGPGSVCTTRV--KTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGG-GADFVMLGGMLAGHE 249 (346)
T ss_pred ccCCccccCcc--ccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHc-CCCEEEeChhhcCcc
Confidence 1 2221 11223445666665554 458999999999999999999986 999999997664433
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-07 Score=88.40 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=107.0
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCC----hHHHHHHHHHH-hcccCccEEEEe-
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN----LPLVKSLVEKL-ALNLNVPVSCKI- 232 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~----p~~v~eIv~av-~~~~~iPVsVKi- 232 (436)
.+-+|++|.=- . .++.+.++.|++.|-|| +.+.++ |+++.++.+.. .+.+-+-+.+|.
T Consensus 76 ~~~v~vGGGIr-~-e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~ 139 (253)
T TIGR02129 76 PGGLQVGGGIN-D-TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT 139 (253)
T ss_pred CCCEEEeCCcC-H-HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc
Confidence 36688888764 3 66667888999998886 334444 88999999988 344333333331
Q ss_pred -----cc---CCC---hhhHH-HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHH
Q 013813 233 -----RV---FPN---LQDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 300 (436)
Q Consensus 233 -----Rl---g~~---~~d~~-~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~ed 300 (436)
++ ||. .-+.. ++++.+++. +..|.++...++++.. .+|++.++++++.+++|||++|||.|.+|
T Consensus 140 ~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~---G~dlel~~~l~~~~~ipVIASGGv~s~eD 215 (253)
T TIGR02129 140 QDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCK---GIDEELVSKLGEWSPIPITYAGGAKSIDD 215 (253)
T ss_pred CCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCccc---cCCHHHHHHHHhhCCCCEEEECCCCCHHH
Confidence 11 332 22556 889999998 9999999998887654 47999999999999999999999999999
Q ss_pred HHHHHHh-cCcceeeeehHHhh
Q 013813 301 VQKCLEE-TGCEGVLSAESLLE 321 (436)
Q Consensus 301 a~~~l~~-tGaDgVmIGRgal~ 321 (436)
+.++.+. .|..++.+|++++.
T Consensus 216 i~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 216 LDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHhcCCCCcEEeeehHHH
Confidence 9987332 26777999999865
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-07 Score=95.89 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=98.7
Q ss_pred cCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHH
Q 013813 165 CANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 165 ~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~ 243 (436)
.|-.++.+.++..++++|+|.|-|.+ ++ | +...+.+.++++++.. +.+|.++ +... .+
T Consensus 243 vg~~~~~~~r~~~l~~ag~d~i~iD~--~~-----g--------~~~~~~~~i~~ik~~~p~~~vi~g-----~v~t-~e 301 (505)
T PLN02274 243 IGTRESDKERLEHLVKAGVDVVVLDS--SQ-----G--------DSIYQLEMIKYIKKTYPELDVIGG-----NVVT-MY 301 (505)
T ss_pred EcCCccHHHHHHHHHHcCCCEEEEeC--CC-----C--------CcHHHHHHHHHHHHhCCCCcEEEe-----cCCC-HH
Confidence 56667888888899999999988865 32 1 2345668889998876 5788777 2222 33
Q ss_pred HHHHHHHcCccEEEec--cCc-cccc----CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 244 YAKMLEDAGCSLLAVH--GRT-RDEK----DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 244 ~ak~le~aG~d~I~VH--gRt-~~~~----~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
-++.+.++|+|.|.|. ... +... .+.+....+..+.++.+..++|||+-|||.+..|+.++|.. ||++||+|
T Consensus 302 ~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~-GA~~V~vG 380 (505)
T PLN02274 302 QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTL-GASTVMMG 380 (505)
T ss_pred HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEc
Confidence 4777889999999773 221 1110 11112235566788888889999999999999999999996 99999999
Q ss_pred hHHhhC
Q 013813 317 ESLLEN 322 (436)
Q Consensus 317 Rgal~n 322 (436)
+.+..-
T Consensus 381 s~~~~t 386 (505)
T PLN02274 381 SFLAGT 386 (505)
T ss_pred hhhccc
Confidence 887653
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.5e-08 Score=91.96 Aligned_cols=89 Identities=22% Similarity=0.344 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++++.+++.|++.|+++........ ...+++.++++++.+++||+++|||++.++++++++. |+++|++|++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~---~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~-G~~~vilg~~ 105 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRG---REPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSL-GADKVSINTA 105 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccC---CCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHc-CCCEEEEChh
Confidence 47889999999999999999988775432 2578999999999999999999999999999998875 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 106 ~l~~~~~~~~~~~ 118 (232)
T TIGR03572 106 ALENPDLIEEAAR 118 (232)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999888764
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-06 Score=85.16 Aligned_cols=141 Identities=19% Similarity=0.246 Sum_probs=98.9
Q ss_pred EEEEecC-CCHHHHHHHHHHHcC--CCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 160 LFVQFCA-NDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 160 livQL~g-~d~e~~~~AA~~v~~--g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+..+-.| .+.++....|++..+ +.|.|-|-. |.| -.|+.|+....+-.+.+.+. ++-|..= .
T Consensus 65 ~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~Llpd~~~tv~aa~~L~~~-Gf~vlpy--c- 130 (248)
T cd04728 65 LLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFTVLPY--C- 130 (248)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCc----------cccccCHHHHHHHHHHHHHC-CCEEEEE--e-
Confidence 3344333 578888888887755 457777763 222 24666666655555554322 2222211 1
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+-...++.++++|++.|-.+|..... ..|..+.++|+.+++..++|||+.|||.+++|+.++++. |||+|++
T Consensus 131 ---~dd~~~ar~l~~~G~~~vmPlg~pIGs---g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Amel-GAdgVlV 203 (248)
T cd04728 131 ---TDDPVLAKRLEDAGCAAVMPLGSPIGS---GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL-GADAVLL 203 (248)
T ss_pred ---CCCHHHHHHHHHcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEE
Confidence 112456899999999999777766553 234567999999999889999999999999999999996 9999999
Q ss_pred ehHHhh
Q 013813 316 AESLLE 321 (436)
Q Consensus 316 GRgal~ 321 (436)
|.++..
T Consensus 204 ~SAIt~ 209 (248)
T cd04728 204 NTAIAK 209 (248)
T ss_pred ChHhcC
Confidence 999863
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-07 Score=88.09 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=103.3
Q ss_pred CEEEEecCC--CHHHHHHHHHHH-cCCCcEEEEec--CCCc--hhhhcCccccccc--CChHHHHHHHHHHhcc-cCccE
Q 013813 159 PLFVQFCAN--DPEILLNAARRV-EPYCDYVDINL--GCPQ--RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LNVPV 228 (436)
Q Consensus 159 plivQL~g~--d~e~~~~AA~~v-~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~-~~iPV 228 (436)
.++.=|... +.+...++++.+ +.|+|.|||-+ .-|. +.+....+--+|. -+.+.+.++++++++. .++|+
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~pl 90 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPI 90 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 455555544 667788888654 66899999985 4454 1111111111121 2456788999999876 68886
Q ss_pred EEEeccCCCh---hhHHHHHHHHHHcCccEEEeccCc--------------------------c-----------c----
Q 013813 229 SCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRT--------------------------R-----------D---- 264 (436)
Q Consensus 229 sVKiRlg~~~---~d~~~~ak~le~aG~d~I~VHgRt--------------------------~-----------~---- 264 (436)
..= ...+. -...+|++.+.++|++.|++|.=. . .
T Consensus 91 v~m--~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy 168 (256)
T TIGR00262 91 GLL--TYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVY 168 (256)
T ss_pred EEE--EeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEE
Confidence 522 11111 123567777888888888774311 0 0
Q ss_pred --ccCCCCC------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 265 --EKDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 265 --~~~~~~g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
...+.+| +...+.++++++.++.||+..|||+|++++.++++. |||+|++|++++
T Consensus 169 ~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~-GADgvVvGSaiv 231 (256)
T TIGR00262 169 LVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDA-GADGVIVGSAIV 231 (256)
T ss_pred EEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHc-CCCEEEECHHHH
Confidence 0011222 124678889999889999999999999999998886 999999999985
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=92.24 Aligned_cols=141 Identities=20% Similarity=0.168 Sum_probs=100.5
Q ss_pred ecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHH
Q 013813 164 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 164 L~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~ 242 (436)
-.+-.++.+.++..+++.|+|.|.|++.- | +-+.+.+.++++++.. ++||.++ -..+ .
T Consensus 218 av~~~~~~~~r~~~L~~aG~d~I~vd~a~----------g-----~~~~~~~~i~~i~~~~~~~~vi~G--~v~t----~ 276 (450)
T TIGR01302 218 AVGTREFDKERAEALVKAGVDVIVIDSSH----------G-----HSIYVIDSIKEIKKTYPDLDIIAG--NVAT----A 276 (450)
T ss_pred EecCchhHHHHHHHHHHhCCCEEEEECCC----------C-----cHhHHHHHHHHHHHhCCCCCEEEE--eCCC----H
Confidence 44556788888888899999999998532 1 2245778888888874 7999997 2222 2
Q ss_pred HHHHHHHHcCccEEEec--cC-ccccc-CCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVH--GR-TRDEK-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VH--gR-t~~~~-~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+-++.+.++|+|+|.|. +. ++..+ ...-|.+.+..+.++++ ..++|||+.|||+++.|+.++|.. ||++||+
T Consensus 277 ~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~-GA~~V~~ 355 (450)
T TIGR01302 277 EQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAA-GADAVML 355 (450)
T ss_pred HHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEE
Confidence 34677788999999763 21 11111 11122345566666654 358999999999999999999997 9999999
Q ss_pred ehHHhhCCccc
Q 013813 316 AESLLENPALF 326 (436)
Q Consensus 316 GRgal~nP~lf 326 (436)
|+.+..-.+..
T Consensus 356 G~~~a~~~e~p 366 (450)
T TIGR01302 356 GSLLAGTTESP 366 (450)
T ss_pred CchhhcCCcCC
Confidence 98886665543
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=85.11 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHH-HcCCCcEEEEec--CCCc--hhhhcCccccccc--CChHHHHHHHHHHhcccCccEEEEeccCCCh-
Q 013813 167 NDPEILLNAARR-VEPYCDYVDINL--GCPQ--RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPVSCKIRVFPNL- 238 (436)
Q Consensus 167 ~d~e~~~~AA~~-v~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~- 238 (436)
.|.+...+.++. ++.|+|.|||-+ .-|. +.+.....--+|. -+.+.+.++++++++..++|+.+= ...+.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm--~Y~N~i 90 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLF--TYYNPI 90 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE--ecccHH
Confidence 467888888875 466999999985 4455 1111111111222 245678889999987778886532 22221
Q ss_pred --hhHHHHHHHHHHcCccEEEec--------------------------cCccc-----------------ccCCCCC--
Q 013813 239 --QDTIKYAKMLEDAGCSLLAVH--------------------------GRTRD-----------------EKDGKKF-- 271 (436)
Q Consensus 239 --~d~~~~ak~le~aG~d~I~VH--------------------------gRt~~-----------------~~~~~~g-- 271 (436)
-...+|++.+.++|++++++. .-+.. ...+-+|
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~ 170 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR 170 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC
Confidence 133456666777777776661 11100 0011111
Q ss_pred ---ccCH-HHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 272 ---RADW-NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 272 ---~ad~-~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+.+. +.++.+|+..++||+..-||+++++++++++. |||||.+|+++++
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~-GADGvIVGSalVk 223 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGW-GADGVIVGSAMVK 223 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhc-CCCEEEECHHHHH
Confidence 2233 45888999889999999999999999998875 9999999999873
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=88.15 Aligned_cols=89 Identities=27% Similarity=0.419 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++++.+++.|++.+++........ + ...+++.++++++.+++||++.|||.+.+|++++++. |||+|++|++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~-g--~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~-Ga~~vilg~~ 105 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA-G--KPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDA-GVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc-C--CcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHc-CCCEEEECch
Confidence 4788999999999999999987643211 1 1478999999999999999999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.+|.++.++..
T Consensus 106 ~l~~~~~l~ei~~ 118 (233)
T PRK00748 106 AVKNPELVKEACK 118 (233)
T ss_pred HHhCHHHHHHHHH
Confidence 9999998887654
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-06 Score=82.41 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=97.5
Q ss_pred CEEEEecC-CCHHHHHHHHHHHcC--CCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 159 PLFVQFCA-NDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 159 plivQL~g-~d~e~~~~AA~~v~~--g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
.+..+-.| .+.++....|++..+ +.+.|-|-. |.|. .++.|+....+-.+.+.+. ++-|.-= .
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~----------~llpd~~~tv~aa~~L~~~-Gf~vlpy--c 130 (250)
T PRK00208 64 TLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDK----------TLLPDPIETLKAAEILVKE-GFVVLPY--C 130 (250)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCC----------CCCcCHHHHHHHHHHHHHC-CCEEEEE--e
Confidence 34444433 578888999988755 457777763 2222 3555555554444444221 2222211 1
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+-..+++.++++|++.|-.+|..... ..|..+.++++.+++..++|||+.|||.+++|+.++++. |||+|+
T Consensus 131 ----~~d~~~ak~l~~~G~~~vmPlg~pIGs---g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Amel-GAdgVl 202 (250)
T PRK00208 131 ----TDDPVLAKRLEEAGCAAVMPLGAPIGS---GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMEL-GADAVL 202 (250)
T ss_pred ----CCCHHHHHHHHHcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEE
Confidence 122456899999999999776666552 234567899999999889999999999999999999996 999999
Q ss_pred eehHHhh
Q 013813 315 SAESLLE 321 (436)
Q Consensus 315 IGRgal~ 321 (436)
+|.|+..
T Consensus 203 V~SAItk 209 (250)
T PRK00208 203 LNTAIAV 209 (250)
T ss_pred EChHhhC
Confidence 9999864
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.8e-07 Score=84.38 Aligned_cols=133 Identities=26% Similarity=0.442 Sum_probs=90.1
Q ss_pred HHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 177 RRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 177 ~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
+++++ |+-+|--=---|..+...| |-+-|.||..+++|+.++ .+||..|.|+|.-.+ |+.|++.|+|+
T Consensus 34 ~IAE~aGAvAVMaLervPaDiR~aG--GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~~E-----A~iLealgVD~ 102 (296)
T COG0214 34 RIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIEEIMDAV----SIPVMAKVRIGHFVE-----AQILEALGVDM 102 (296)
T ss_pred HHHHhcCceeEeehhhCcHHHHhcc--CccccCCHHHHHHHHHhc----ccceeeeeecchhHH-----HHHHHHhCCCc
Confidence 34433 5433322223566654444 788999999999888764 699999999986422 77889999998
Q ss_pred EEe-----------c------------c------------------CcccccCC--------------------------
Q 013813 256 LAV-----------H------------G------------------RTRDEKDG-------------------------- 268 (436)
Q Consensus 256 I~V-----------H------------g------------------Rt~~~~~~-------------------------- 268 (436)
|.= | | ||+.+...
T Consensus 103 IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~ed 182 (296)
T COG0214 103 IDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTED 182 (296)
T ss_pred cccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHH
Confidence 842 1 0 22211100
Q ss_pred ------CCCccCHHHHHHHHhhCCCcE--EEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 269 ------KKFRADWNAIKAVKNALRIPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 269 ------~~g~ad~~~i~~ik~~~~iPV--ianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
....+-++++..+++.-.+|| ++.|||-|+.|+.-+++. |||||.+|+|+++
T Consensus 183 el~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~L-GadGVFVGSGIFK 242 (296)
T COG0214 183 ELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQL-GADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHh-CCCeEEecccccC
Confidence 000123566677777667887 699999999999999986 9999999999754
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-06 Score=85.62 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=104.8
Q ss_pred CCCEEEEecCC--CHHHHHHHHHHH-cCCCcEEEEec--CCCc--hhhhcCcccccccC--ChHHHHHHHHHHhcccCcc
Q 013813 157 DRPLFVQFCAN--DPEILLNAARRV-EPYCDYVDINL--GCPQ--RIARRGNYGAFLMD--NLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 157 e~plivQL~g~--d~e~~~~AA~~v-~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll~--~p~~v~eIv~av~~~~~iP 227 (436)
+..++.=|... +.+...+.++.+ +.|+|.|||-+ .-|. +.+....+--+|.+ +.+.+.++++++++..++|
T Consensus 14 ~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 33566666555 567788877654 66899999984 4555 11111111122222 4567888999998878888
Q ss_pred EEEEeccCCCh---hhHHHHHHHHHHcCccEEEeccCc--------------------------c-----------c---
Q 013813 228 VSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRT--------------------------R-----------D--- 264 (436)
Q Consensus 228 VsVKiRlg~~~---~d~~~~ak~le~aG~d~I~VHgRt--------------------------~-----------~--- 264 (436)
+.+= ...+. -...+|++.+.++|+|++++|.=. . .
T Consensus 94 ~vlm--~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFI 171 (263)
T CHL00200 94 IVIF--TYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCI 171 (263)
T ss_pred EEEE--ecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcE
Confidence 6432 22221 133567778888888888874310 0 0
Q ss_pred ---ccCCCCCc-----c-CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 265 ---EKDGKKFR-----A-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 265 ---~~~~~~g~-----a-d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
...+.+|. . --++++.+++.+++||...+||+++++++++.+. |||||.+|++++.
T Consensus 172 Y~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~-GADGvVVGSalv~ 236 (263)
T CHL00200 172 YLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGW-NINGIVIGSACVQ 236 (263)
T ss_pred EEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhc-CCCEEEECHHHHH
Confidence 00111121 1 1355778888889999999999999999998875 9999999999965
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=83.97 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCccccccc----------CChHHHHHHHHHHhcccCccEEE--Eec
Q 013813 167 NDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLM----------DNLPLVKSLVEKLALNLNVPVSC--KIR 233 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll----------~~p~~v~eIv~av~~~~~iPVsV--KiR 233 (436)
.+.+.+.+.++.++. |+|.|||++ |...-.-+ |-.+. -+.+...++++.+++.+++|+.+ +..
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~D--G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n 86 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVAD--GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 456788888877655 899999996 44221111 11111 12457788999999887888655 432
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEecc--------------------------Ccc--------c---c------cCCCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHG--------------------------RTR--------D---E------KDGKK 270 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHg--------------------------Rt~--------~---~------~~~~~ 270 (436)
.-.. ....+|++.+.++|+++|+++. -|. . . ..+..
T Consensus 87 ~~~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~t 165 (242)
T cd04724 87 PILQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVT 165 (242)
T ss_pred HHHH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCC
Confidence 2100 0124567777778888777721 000 0 0 01111
Q ss_pred C------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 271 F------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 271 g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
| ....+.++++++..++||+..|||++.+++.++.+. ||+|.+|+++..
T Consensus 166 G~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGSaiv~ 220 (242)
T cd04724 166 GARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSALVK 220 (242)
T ss_pred CCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc--CCEEEECHHHHH
Confidence 1 112467888888889999999999999999998874 999999988753
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.3e-07 Score=90.62 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=79.1
Q ss_pred CChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR- 286 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~- 286 (436)
.+|-.+.+.+..+++.+..|+.+| ......+ ++.+-..|+++|.+......+. ..+....+.+.++++.++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~k-----GV~~~~D-~~~a~~tg~~~I~vsnhggrql--D~g~st~~~L~ei~~av~~ 272 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLK-----GILAPED-AAGAGGTGADGIEVSNHGGRQL--DWGISTADSLPEIVEAVGD 272 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHh-----CCCCHHH-HHhhccCCceEEEEEcCCCccc--cCCCChHHHHHHHHHHhCC
Confidence 567777777788887777888777 2233334 4556678999998843222222 223566788999999885
Q ss_pred -CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 287 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 287 -iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++|++.|||++..|+.+++.. |||+|++||.+|.
T Consensus 273 ~~~vi~dGGiR~G~Dv~KAlAL-GA~~v~igrp~L~ 307 (360)
T COG1304 273 RIEVIADGGIRSGLDVAKALAL-GADAVGIGRPFLY 307 (360)
T ss_pred CeEEEecCCCCCHHHHHHHHHh-CCchhhhhHHHHH
Confidence 999999999999999999997 9999999998875
|
|
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-06 Score=84.16 Aligned_cols=101 Identities=27% Similarity=0.318 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcE
Q 013813 212 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 289 (436)
Q Consensus 212 ~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPV 289 (436)
+-=+=++++++.++.|+.+|==+ +-+| |+.+.++|+++|+|...-.-|. ...++..+.+.++.+++ ++||
T Consensus 210 l~W~Di~wLr~~T~LPIvvKGil--t~eD----A~~Ave~G~~GIIVSNHGgRQl--D~vpAtI~~L~Evv~aV~~ri~V 281 (363)
T KOG0538|consen 210 LSWKDIKWLRSITKLPIVVKGVL--TGED----ARKAVEAGVAGIIVSNHGGRQL--DYVPATIEALPEVVKAVEGRIPV 281 (363)
T ss_pred CChhhhHHHHhcCcCCeEEEeec--ccHH----HHHHHHhCCceEEEeCCCcccc--CcccchHHHHHHHHHHhcCceEE
Confidence 33455788888899999999222 2233 5667789999999943222222 22378889999999988 6999
Q ss_pred EEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 290 LANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 290 ianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+.-|||++..|+.++|.. ||.+|.|||.++.
T Consensus 282 ~lDGGVR~G~DVlKALAL-GAk~VfiGRP~v~ 312 (363)
T KOG0538|consen 282 FLDGGVRRGTDVLKALAL-GAKGVFIGRPIVW 312 (363)
T ss_pred EEecCcccchHHHHHHhc-ccceEEecCchhe
Confidence 999999999999999986 9999999996654
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.6e-06 Score=81.01 Aligned_cols=125 Identities=17% Similarity=0.257 Sum_probs=91.1
Q ss_pred HHHHHHcCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe---ccCCChhhHHHHHHHH
Q 013813 174 NAARRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI---RVFPNLQDTIKYAKML 248 (436)
Q Consensus 174 ~AA~~v~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi---Rlg~~~~d~~~~ak~l 248 (436)
++.+.+++|+|.||+ |.|++ .-.+.+.+.+-+.++++.+ .|+.+|+ -...+.++....++.+
T Consensus 79 e~~~Ai~~GA~EiD~Vin~~~~------------~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~ 145 (221)
T PRK00507 79 EAKDAIANGADEIDMVINIGAL------------KSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIA 145 (221)
T ss_pred HHHHHHHcCCceEeeeccHHHh------------cCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHH
Confidence 444567789999886 44443 3345778888888887765 4677887 2234556778889999
Q ss_pred HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 249 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++|+|+|-..-... .+.+..+.++.+++.+ +++|.++|||+|.+++.++++. ||+.+...++
T Consensus 146 ~~agadfIKTsTG~~------~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~a-GA~riGtS~~ 210 (221)
T PRK00507 146 KEAGADFVKTSTGFS------TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEA-GATRLGTSAG 210 (221)
T ss_pred HHhCCCEEEcCCCCC------CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHc-CcceEccCcH
Confidence 999999774421111 2246778888888876 4999999999999999999997 9998766544
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6e-07 Score=86.76 Aligned_cols=90 Identities=27% Similarity=0.400 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+..++++.+.+.|++.|++-...... .+ ...+++.++++.+..++|++.+|||+|.++++.+++. |||+|++|+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~-~~--~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~-Ga~~v~iGs~ 107 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAF-EG--ERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDL-GVDRVILGTA 107 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhh-cC--CcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHc-CCCEEEEChH
Confidence 467889999999999998664333211 11 1467899999999999999999999999999999985 9999999999
Q ss_pred HhhCCccchhhhhh
Q 013813 319 LLENPALFAGFRTA 332 (436)
Q Consensus 319 al~nP~lf~~i~~~ 332 (436)
++.+|+++.++...
T Consensus 108 ~~~~~~~~~~i~~~ 121 (241)
T PRK13585 108 AVENPEIVRELSEE 121 (241)
T ss_pred HhhChHHHHHHHHH
Confidence 99999999887643
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.5e-06 Score=79.97 Aligned_cols=133 Identities=15% Similarity=0.141 Sum_probs=105.3
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+...+...+++++.+.++ .++.|+..+.+++| .+++.-.++++++++.+ ++.+.+..+-
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDan~ 138 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDANR 138 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 34555566667888777765 45679999999875 12456667888888876 4678888777
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++++++.+++.|+++|.- . .. ..|++..+++++.+++||.+.+.+.+.+++.++++...+|.|+
T Consensus 139 ~~~~~~a~~~~~~l~~~~i~~iEe-------P--~~-~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ 208 (265)
T cd03315 139 GWTPKQAIRALRALEDLGLDYVEQ-------P--LP-ADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVN 208 (265)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEC-------C--CC-cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEE
Confidence 899999999999999999988832 1 11 3478889999999999999999999999999999987899987
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 209 ~k 210 (265)
T cd03315 209 IK 210 (265)
T ss_pred Ee
Confidence 64
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-06 Score=78.80 Aligned_cols=147 Identities=16% Similarity=0.258 Sum_probs=94.9
Q ss_pred EEEecCCCHHHHHHHHHHHcC-CCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccE--EEEeccCC
Q 013813 161 FVQFCANDPEILLNAARRVEP-YCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPV--SCKIRVFP 236 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~-g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPV--sVKiRlg~ 236 (436)
.++|...|++.+.+.++.+.+ |+|.|++- +.+|.- ++...-.++++++++..+.|+ -++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~------------~~~~~~~~~v~~i~~~~~~~v~v~lm~~--- 66 (210)
T TIGR01163 2 APSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFV------------PNLTFGPPVLEALRKYTDLPIDVHLMVE--- 66 (210)
T ss_pred cchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 467888899999999987755 89999997 333331 111233455666665555664 34433
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCccc---------------------c-----c-----------------CCCCC-c
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRD---------------------E-----K-----------------DGKKF-R 272 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~---------------------~-----~-----------------~~~~g-~ 272 (436)
+..++++.+.++|+|+|++|+...+ . . .+.+| .
T Consensus 67 ---~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~ 143 (210)
T TIGR01163 67 ---NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQK 143 (210)
T ss_pred ---CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCccc
Confidence 2345677777888888888764210 0 0 01111 2
Q ss_pred cCHHH---HHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 273 ADWNA---IKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 273 ad~~~---i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
.+|.. ++++++.+ ++||++.|||+ .+.+.++++ +|+|+|.+|++++..++.-.
T Consensus 144 ~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~-~gad~iivgsai~~~~d~~~ 204 (210)
T TIGR01163 144 FIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAE-AGADILVAGSAIFGADDYKE 204 (210)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHH-cCCCEEEEChHHhCCCCHHH
Confidence 23433 44444433 37999999996 799999886 59999999999988776443
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.9e-06 Score=81.30 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=99.0
Q ss_pred CEEEEecCC--CHHHHHHHHHHH-cCCCcEEEEec--CCCc--hhhhcCcccccccC--ChHHHHHHHHHHh-cccCccE
Q 013813 159 PLFVQFCAN--DPEILLNAARRV-EPYCDYVDINL--GCPQ--RIARRGNYGAFLMD--NLPLVKSLVEKLA-LNLNVPV 228 (436)
Q Consensus 159 plivQL~g~--d~e~~~~AA~~v-~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll~--~p~~v~eIv~av~-~~~~iPV 228 (436)
.++.=+... +.+...++++.+ +.|+|.|||-+ .-|. +.+....+--+|.+ +.+.+.+++++++ +..++|+
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~ 92 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPI 92 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 456555544 667888888654 56899999985 4454 11111111122222 4567788888988 5567887
Q ss_pred EEEeccCCCh---hhHHHHHHHHHHcCccEEEec--------------------------cCccc---------------
Q 013813 229 SCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVH--------------------------GRTRD--------------- 264 (436)
Q Consensus 229 sVKiRlg~~~---~d~~~~ak~le~aG~d~I~VH--------------------------gRt~~--------------- 264 (436)
.+= ...+. -...+|++.+.++|+++++|. .-+..
T Consensus 93 vlm--~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 93 VLM--TYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred EEE--ecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 533 21111 123456666666666666651 11100
Q ss_pred --ccCCCCC-----ccC-HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 265 --EKDGKKF-----RAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 265 --~~~~~~g-----~ad-~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
...+.+| +.+ .+.++.+++..++||+..+||++.+++.++++ +||||.+|++++.
T Consensus 171 ~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~--~ADGviVGSaiv~ 233 (258)
T PRK13111 171 YVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA--VADGVIVGSALVK 233 (258)
T ss_pred EEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH--hCCEEEEcHHHHH
Confidence 0011111 122 35889999988999999999999999999886 4999999999873
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-06 Score=85.68 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+.+.|++.|++-.-.... + ...+.+.++++.+.+++||.+.|||+|.+|+++++.. ||+.|.+|.+
T Consensus 32 ~dp~~~a~~~~~~g~~~l~ivDLd~~~--g--~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~-Ga~kvviGs~ 106 (241)
T PRK14024 32 GSPLDAALAWQRDGAEWIHLVDLDAAF--G--RGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALAT-GCARVNIGTA 106 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeccccC--C--CCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHC-CCCEEEECch
Confidence 378899999999999999987655432 2 2467899999999999999999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 107 ~l~~p~l~~~i~~ 119 (241)
T PRK14024 107 ALENPEWCARVIA 119 (241)
T ss_pred HhCCHHHHHHHHH
Confidence 9999999988764
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.8e-06 Score=77.48 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=60.0
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
.++.+++.|+|+|.++...............|+.++++++.+++||++.||| +++++.++++ .|+|+|++|++++..+
T Consensus 107 ~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~-~Ga~gvav~s~i~~~~ 184 (201)
T PRK07695 107 EAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLA-AGVSGIAVMSGIFSSA 184 (201)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEHHHhcCC
Confidence 3667888999999764322221111112357899999999899999999999 8999999998 5999999999998643
Q ss_pred c
Q 013813 324 A 324 (436)
Q Consensus 324 ~ 324 (436)
.
T Consensus 185 ~ 185 (201)
T PRK07695 185 N 185 (201)
T ss_pred C
Confidence 3
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=85.43 Aligned_cols=89 Identities=18% Similarity=0.332 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+.+.|++.|++..-.+..... ..+++.++++.+.+++||++.|||++.+|+++++.. |+++|.+|++
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~---~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~-G~~~vvigs~ 105 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGS---EPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSL-GVEKVSINTA 105 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCC---cccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHC-CCCEEEEChH
Confidence 488899999999999999997665553222 468999999999999999999999999999999975 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.+|.++.++..
T Consensus 106 ~~~~~~~~~~~~~ 118 (258)
T PRK01033 106 ALEDPDLITEAAE 118 (258)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999888754
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-06 Score=83.69 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=111.5
Q ss_pred CCCCEEEEecCC--CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEE
Q 013813 156 EDRPLFVQFCAN--DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSC 230 (436)
Q Consensus 156 ~e~plivQL~g~--d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsV 230 (436)
...|+...+.+. +++++.++++. .+.||+.|.|.+|.... +.++++...++++++++.+ ++++.+
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~----------~~~~~~~d~~~v~~ir~~~g~~~~l~v 194 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDS----------GGEDLREDLARVRAVREAVGPDVDLMV 194 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCc----------chHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 345566666555 58999888865 46799999999874321 1166788889999999887 578888
Q ss_pred EeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
...-+++.++++++++.+++.|+.+|- +.. . ..+++..+.+++.+++||++.+.+.+++++.++++...+
T Consensus 195 DaN~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~--~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~ 264 (357)
T cd03316 195 DANGRWDLAEAIRLARALEEYDLFWFE-------EPV-P--PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV 264 (357)
T ss_pred ECCCCCCHHHHHHHHHHhCccCCCeEc-------CCC-C--ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC
Confidence 887789999999999999999887763 111 1 236888999999999999999999999999999998789
Q ss_pred ceeeee
Q 013813 311 EGVLSA 316 (436)
Q Consensus 311 DgVmIG 316 (436)
|.|.+-
T Consensus 265 d~v~~k 270 (357)
T cd03316 265 DIIQPD 270 (357)
T ss_pred CEEecC
Confidence 988754
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.6e-06 Score=88.61 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE 249 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le 249 (436)
+.+..+..+++.|+|.|+|. +.+. ..+.+.+.++++++..+.++.|+ .|. .. +.+-++.+.
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd--~a~g-------------~~~~~~~~i~~ir~~~~~~~~V~--aGn-V~-t~e~a~~li 302 (502)
T PRK07107 242 DYAERVPALVEAGADVLCID--SSEG-------------YSEWQKRTLDWIREKYGDSVKVG--AGN-VV-DREGFRYLA 302 (502)
T ss_pred hHHHHHHHHHHhCCCeEeec--Cccc-------------ccHHHHHHHHHHHHhCCCCceEE--ecc-cc-CHHHHHHHH
Confidence 45666667888899999986 2221 13455788888888776556666 321 11 123356677
Q ss_pred HcCccEEEe--ccCcc-ccc-CCCCCccCHHHHHHHHhhC-------C--CcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 250 DAGCSLLAV--HGRTR-DEK-DGKKFRADWNAIKAVKNAL-------R--IPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 250 ~aG~d~I~V--HgRt~-~~~-~~~~g~ad~~~i~~ik~~~-------~--iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++|+|+|.| |+... ..+ ....|.+.+..+.++++.. + +|||+-|||++..|+.++|.. |||+||+|
T Consensus 303 ~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~-GA~~vm~G 381 (502)
T PRK07107 303 EAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAM-GADFIMLG 381 (502)
T ss_pred HcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHc-CCCeeeeC
Confidence 899999987 33311 111 1223455677777776643 3 899999999999999999986 99999999
Q ss_pred hHHhhC
Q 013813 317 ESLLEN 322 (436)
Q Consensus 317 Rgal~n 322 (436)
|.+-+-
T Consensus 382 ~~~ag~ 387 (502)
T PRK07107 382 RYFARF 387 (502)
T ss_pred hhhhcc
Confidence 987553
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-05 Score=77.45 Aligned_cols=147 Identities=14% Similarity=0.238 Sum_probs=93.8
Q ss_pred CCCCEEEEecCCCHH-------HH-HHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc---cc
Q 013813 156 EDRPLFVQFCANDPE-------IL-LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NL 224 (436)
Q Consensus 156 ~e~plivQL~g~d~e-------~~-~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~---~~ 224 (436)
.+.++++.+.+..+. .+ ..+.+.++.|+|+|++-.- .|+ ..+.+.+ +.++++++ ..
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 356678877433221 22 3344567789999888631 121 1122333 34444443 34
Q ss_pred CccEEEEec-----cCC-ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC--
Q 013813 225 NVPVSCKIR-----VFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-- 296 (436)
Q Consensus 225 ~iPVsVKiR-----lg~-~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~-- 296 (436)
++|+.|..- ++. +.+.....++.+.+.|+|+|-+. + ..+.+.++++.+...+||++.|||+
T Consensus 136 g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---------~--~~~~~~l~~~~~~~~iPVva~GGi~~~ 204 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---------Y--TGDIDSFRDVVKGCPAPVVVAGGPKTN 204 (258)
T ss_pred CCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc---------C--CCCHHHHHHHHHhCCCcEEEecCCCCC
Confidence 788887432 222 22333444678889999999763 1 1357889999888899999999999
Q ss_pred CHHHHHHHH----HhcCcceeeeehHHhhCCccch
Q 013813 297 HMEDVQKCL----EETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 297 s~eda~~~l----~~tGaDgVmIGRgal~nP~lf~ 327 (436)
|.+++.+.+ + .|++|+.+||+++..++...
T Consensus 205 ~~~~~~~~i~~~~~-aGa~Gia~g~~i~~~~dp~~ 238 (258)
T TIGR01949 205 SDREFLQMIKDAME-AGAAGVAVGRNIFQHDDPVG 238 (258)
T ss_pred CHHHHHHHHHHHHH-cCCcEEehhhHhhcCCCHHH
Confidence 666665554 5 59999999999998776443
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.1e-07 Score=83.82 Aligned_cols=126 Identities=26% Similarity=0.464 Sum_probs=85.9
Q ss_pred CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-------------
Q 013813 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV------------- 258 (436)
Q Consensus 192 CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V------------- 258 (436)
-|......| |-+-|.||..+++|- +++.+||..|.|+|.-.+ |+++++.|+|+|.=
T Consensus 51 vPadiR~~G--gV~RMsDP~mIKei~----~aVsiPVMAk~RiGHFVE-----AQIlE~l~vDYiDESEvlt~AD~~hhI 119 (296)
T KOG1606|consen 51 VPADIRAQG--GVARMSDPRMIKEIK----NAVSIPVMAKVRIGHFVE-----AQILEALGVDYIDESEVLTPADWDHHI 119 (296)
T ss_pred CCHhHHhcC--CeeecCCHHHHHHHH----HhccchhhhhhhhhhhhH-----HHHHHHhccCccchhhhcccccccchh
Confidence 465544444 788899998877664 556899999999975322 67788888888731
Q ss_pred --cc--------------------------CcccccCC--------------------------------CCCccCHHHH
Q 013813 259 --HG--------------------------RTRDEKDG--------------------------------KKFRADWNAI 278 (436)
Q Consensus 259 --Hg--------------------------Rt~~~~~~--------------------------------~~g~ad~~~i 278 (436)
|. ||..+... ....+-++++
T Consensus 120 ~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv 199 (296)
T KOG1606|consen 120 EKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLV 199 (296)
T ss_pred hhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHH
Confidence 00 11111000 0001234555
Q ss_pred HHHHhhCCCcE--EEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 279 KAVKNALRIPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 279 ~~ik~~~~iPV--ianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
++.++.-.+|| ++.|||.|+.|+.-+++. |||||.+|.|.+..++=++..
T Consensus 200 ~~t~q~GrlPVV~FAaGGvaTPADAALmMQL-GCdGVFVGSgiFks~dP~k~a 251 (296)
T KOG1606|consen 200 KQTKQLGRLPVVNFAAGGVATPADAALMMQL-GCDGVFVGSGIFKSGDPVKRA 251 (296)
T ss_pred HHHHHcCCCceEEecccCcCChhHHHHHHHc-CCCeEEeccccccCCCHHHHH
Confidence 66666657888 599999999999998886 999999999988777766544
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-05 Score=75.65 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++...++..++..|++.|.+..-.. ...+.+.++++++++.+++|++..|||+|.++++++++. |||+|.+|
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sG-----a~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~-GAD~VVVG 205 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSG-----ASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLA-GADAIVTG 205 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCC-----CCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHc-CCCEEEeC
Confidence 3445555666666666665532211 111456899999999999999999999999999999886 89999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4e-06 Score=78.72 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=61.6
Q ss_pred HHHHHHcCccEE--EeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 245 AKMLEDAGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 245 ak~le~aG~d~I--~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+..+.++|+|.| |++|.|.... .....|+.+++++.+ .+++||+-|.+.|+++++++++. ||++|.+| +++..
T Consensus 140 ~l~a~~~G~D~IGTTLsGYT~~~~--~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~-Ga~aVvVG-sAITR 214 (229)
T COG3010 140 GLNAHKLGFDIIGTTLSGYTGYTE--KPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEI-GADAVVVG-SAITR 214 (229)
T ss_pred HHHHHHcCCcEEecccccccCCCC--CCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHh-CCeEEEEC-cccCC
Confidence 444678899988 7778776432 222579999999988 79999999999999999999996 99999999 55566
Q ss_pred Cccc
Q 013813 323 PALF 326 (436)
Q Consensus 323 P~lf 326 (436)
|.-.
T Consensus 215 p~~I 218 (229)
T COG3010 215 PEEI 218 (229)
T ss_pred HHHH
Confidence 6533
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.1e-05 Score=75.40 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=102.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
-+.|++..=|-.++- ++....+.|+|+|=|... . + +++.+.++++..++ .++-+.|-+.
T Consensus 110 v~iPvl~kdfi~~~~---qi~~a~~~GAD~VlLi~~-------------~-l-~~~~l~~li~~a~~-lGl~~lvevh-- 168 (260)
T PRK00278 110 VSLPVLRKDFIIDPY---QIYEARAAGADAILLIVA-------------A-L-DDEQLKELLDYAHS-LGLDVLVEVH-- 168 (260)
T ss_pred cCCCEEeeeecCCHH---HHHHHHHcCCCEEEEEec-------------c-C-CHHHHHHHHHHHHH-cCCeEEEEeC--
Confidence 357888765655655 333445679999988732 2 2 35678888888765 4777666643
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.++ ++.+.++|++.|.+|+|.... . ..|++.+.++.+.. .+++|+.|||.+++++.++++. |+|+|
T Consensus 169 -~~~E----~~~A~~~gadiIgin~rdl~~---~--~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~-Gad~v 237 (260)
T PRK00278 169 -DEEE----LERALKLGAPLIGINNRNLKT---F--EVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKA-GADAV 237 (260)
T ss_pred -CHHH----HHHHHHcCCCEEEECCCCccc---c--cCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHc-CCCEE
Confidence 2222 244668899999999887542 2 45678888888765 3699999999999999999986 99999
Q ss_pred eeehHHhhCCccch
Q 013813 314 LSAESLLENPALFA 327 (436)
Q Consensus 314 mIGRgal~nP~lf~ 327 (436)
.||++++..+..-.
T Consensus 238 lVGsaI~~~~dp~~ 251 (260)
T PRK00278 238 LVGESLMRADDPGA 251 (260)
T ss_pred EECHHHcCCCCHHH
Confidence 99999998877544
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.6e-06 Score=88.65 Aligned_cols=141 Identities=18% Similarity=0.127 Sum_probs=97.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~ 236 (436)
+..+-.+.+-..+....+..+++.|+|.|-|-... .+++.+.++++++++.. ++||.+. -..
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~---------------g~~~~~~~~i~~i~~~~~~~~vi~g--~~~ 275 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAH---------------GHQVKMISAIKAVRALDLGVPIVAG--NVV 275 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCC---------------CCcHHHHHHHHHHHHHCCCCeEEEe--ccC
Confidence 44566666666677777778888899988776432 24578999999999875 7899884 112
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCccc--cc--CCCCCc----cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRD--EK--DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~--~~--~~~~g~----ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t 308 (436)
+ .+-++.|.++|+|.|.|-++... .. ...-|. +.++..+.+++ .++|||+.|||+++.|+.++|..
T Consensus 276 t----~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~-~~~~viadGgi~~~~di~kala~- 349 (475)
T TIGR01303 276 S----AEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK-LGGHVWADGGVRHPRDVALALAA- 349 (475)
T ss_pred C----HHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHc-
Confidence 2 34467788999999987433211 00 111112 23443333343 38999999999999999999996
Q ss_pred CcceeeeehHHhh
Q 013813 309 GCEGVLSAESLLE 321 (436)
Q Consensus 309 GaDgVmIGRgal~ 321 (436)
|||+||+|+-+-+
T Consensus 350 GA~~vm~g~~~ag 362 (475)
T TIGR01303 350 GASNVMVGSWFAG 362 (475)
T ss_pred CCCEEeechhhcc
Confidence 9999999977643
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-06 Score=84.24 Aligned_cols=86 Identities=16% Similarity=0.284 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.++++.+.+. ++.|++-.+.... .+. +.+++.++++.+.+++||++.|||+|.+|++++++. |+++|.+|+++
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~-~g~--~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~-G~~~vivGtaa 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAF-EGK--PKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEI-GVENVIIGTKA 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchh-cCC--cchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHC-CCCEEEECchh
Confidence 788899999998 9999886554321 111 468999999999999999999999999999999986 99999999999
Q ss_pred hhCCccchhhhh
Q 013813 320 LENPALFAGFRT 331 (436)
Q Consensus 320 l~nP~lf~~i~~ 331 (436)
+ ||.+++++..
T Consensus 106 ~-~~~~l~~~~~ 116 (228)
T PRK04128 106 F-DLEFLEKVTS 116 (228)
T ss_pred c-CHHHHHHHHH
Confidence 9 9999987753
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=79.85 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=92.0
Q ss_pred CCCEEEEecCC--------CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc---ccC
Q 013813 157 DRPLFVQFCAN--------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLN 225 (436)
Q Consensus 157 e~plivQL~g~--------d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~---~~~ 225 (436)
+.++++.+.+. ....+.++.+.++.|+|+|++-+- +|+.. .+.+.+.++++++ ..+
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~----------~g~~~---~~~~~~~~~~v~~~~~~~g 139 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVN----------VGSET---EAEMLEDLGEVAEECEEWG 139 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEe----------cCChh---HHHHHHHHHHHHHHHHHcC
Confidence 45566665521 122233344567789999888631 11110 1223333333333 347
Q ss_pred ccEEEEec-------cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC--
Q 013813 226 VPVSCKIR-------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-- 296 (436)
Q Consensus 226 iPVsVKiR-------lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~-- 296 (436)
+|+.|=.. .+.+.+.....++.+.+.|+|+|-.. +. .+.+.++++.+..++||++.|||+
T Consensus 140 ~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---------~~--~~~~~l~~~~~~~~ipV~a~GGi~~~ 208 (267)
T PRK07226 140 MPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN---------YT--GDPESFREVVEGCPVPVVIAGGPKTD 208 (267)
T ss_pred CcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC---------CC--CCHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 88777321 11223344555788889999999443 21 256788888887789999999999
Q ss_pred CHHHHHHHH----HhcCcceeeeehHHhhCCccc
Q 013813 297 HMEDVQKCL----EETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 297 s~eda~~~l----~~tGaDgVmIGRgal~nP~lf 326 (436)
+.+++.+++ + .||+|+.+||.++..++.-
T Consensus 209 ~~~~~l~~v~~~~~-aGA~Gis~gr~i~~~~~p~ 241 (267)
T PRK07226 209 TDREFLEMVRDAME-AGAAGVAVGRNVFQHEDPE 241 (267)
T ss_pred CHHHHHHHHHHHHH-cCCcEEehhhhhhcCCCHH
Confidence 889888886 5 4999999999999877643
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=84.12 Aligned_cols=89 Identities=6% Similarity=0.129 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHH-cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 239 QDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~-aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.++.+.|+.+.+ .|++.|+|-.-..... + ...+++.|+++.+.+++||.+.|||+|.+|+++++.. ||+-|.+|+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~-~--~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~-Ga~kvvigt 106 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKA-Q--HAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAA-GINYCIVGT 106 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECccccc-C--CcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHC-CCCEEEECc
Confidence 367789999998 7999999876544321 1 1568899999999999999999999999999999986 999999999
Q ss_pred HHhhCCccchhhhh
Q 013813 318 SLLENPALFAGFRT 331 (436)
Q Consensus 318 gal~nP~lf~~i~~ 331 (436)
.++.||.+++++..
T Consensus 107 ~a~~~~~~l~~~~~ 120 (234)
T PRK13587 107 KGIQDTDWLKEMAH 120 (234)
T ss_pred hHhcCHHHHHHHHH
Confidence 99999999998764
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=86.28 Aligned_cols=139 Identities=20% Similarity=0.193 Sum_probs=95.7
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~ 238 (436)
++-...+-+++.+..+..+++.|+|.|=++. ++ | +...+.+.++.+++.. ++||.++ -..+.
T Consensus 218 ~V~aai~~~~~~~e~a~~L~~agvdvivvD~--a~--------g-----~~~~vl~~i~~i~~~~p~~~vi~g--~v~t~ 280 (486)
T PRK05567 218 RVGAAVGVGADNEERAEALVEAGVDVLVVDT--AH--------G-----HSEGVLDRVREIKAKYPDVQIIAG--NVATA 280 (486)
T ss_pred EEEeecccCcchHHHHHHHHHhCCCEEEEEC--CC--------C-----cchhHHHHHHHHHhhCCCCCEEEe--ccCCH
Confidence 4445556566666666677788999875542 11 1 1244677788888877 8999997 22232
Q ss_pred hhHHHHHHHHHHcCccEEEeccCccc----cc-CCCCCccCHHHHHHHHhh---CCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRD----EK-DGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~----~~-~~~~g~ad~~~i~~ik~~---~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
+-++.+.++|+|+|.|-. +.. .+ ...-|.+++..+.++++. .++|||+.|||.++.|+.++|.. ||
T Consensus 281 ----e~a~~l~~aGad~i~vg~-g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~-GA 354 (486)
T PRK05567 281 ----EAARALIEAGADAVKVGI-GPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA-GA 354 (486)
T ss_pred ----HHHHHHHHcCCCEEEECC-CCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHh-CC
Confidence 346667789999997632 111 00 112234677888777764 47999999999999999999996 99
Q ss_pred ceeeeehHHhh
Q 013813 311 EGVLSAESLLE 321 (436)
Q Consensus 311 DgVmIGRgal~ 321 (436)
|+||+|+.+-.
T Consensus 355 ~~v~~G~~~a~ 365 (486)
T PRK05567 355 SAVMLGSMLAG 365 (486)
T ss_pred CEEEECccccc
Confidence 99999977644
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5e-06 Score=80.32 Aligned_cols=130 Identities=19% Similarity=0.175 Sum_probs=92.6
Q ss_pred EEecC--CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC----
Q 013813 162 VQFCA--NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---- 235 (436)
Q Consensus 162 vQL~g--~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg---- 235 (436)
+|+.| ++.+++.+ +++.|++.+-++ ++.. +|+++.++.+...+ +-+++-.|-|
T Consensus 76 v~~gGGIrs~edv~~---l~~~G~~~vivG--------------taa~-~~~~l~~~~~~~g~---ivvslD~~~g~v~~ 134 (228)
T PRK04128 76 VQVGGGLRTYESIKD---AYEIGVENVIIG--------------TKAF-DLEFLEKVTSEFEG---ITVSLDVKGGRIAV 134 (228)
T ss_pred EEEcCCCCCHHHHHH---HHHCCCCEEEEC--------------chhc-CHHHHHHHHHHcCC---EEEEEEccCCeEec
Confidence 55544 45555554 445688887654 4455 79999999887732 4555555443
Q ss_pred --C---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 236 --P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 236 --~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tG 309 (436)
| ...+..++++.+++. +..|.++...++++..+ +| .+.+. .++|||++|||.+.+|+.++.+ .|
T Consensus 135 ~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G---~d-----~l~~~~~~~pviasGGv~~~~Dl~~l~~-~g 204 (228)
T PRK04128 135 KGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTG---IE-----EIERFWGDEEFIYAGGVSSAEDVKKLAE-IG 204 (228)
T ss_pred CCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccC---HH-----HHHHhcCCCCEEEECCCCCHHHHHHHHH-CC
Confidence 2 123457888888888 99999998888765432 33 22222 5899999999999999999887 49
Q ss_pred cceeeeehHHhhC
Q 013813 310 CEGVLSAESLLEN 322 (436)
Q Consensus 310 aDgVmIGRgal~n 322 (436)
++||.+|++++..
T Consensus 205 ~~gvivg~al~~g 217 (228)
T PRK04128 205 FSGVIIGKALYEG 217 (228)
T ss_pred CCEEEEEhhhhcC
Confidence 9999999998765
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.3e-06 Score=85.88 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=70.7
Q ss_pred cCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC------CCCCccCHHHHH
Q 013813 207 MDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIK 279 (436)
Q Consensus 207 l~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~------~~~g~ad~~~i~ 279 (436)
..+++-+.+.|+.+|+.. ++||+||+-.+...++. +..+.++|+|+|+|.|.....-. ..-|-+-...+.
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~---~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~ 260 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDI---AAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALA 260 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHH---HHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHH---HHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHH
Confidence 346788999999999988 89999998776654433 33377899999999876542100 000111112233
Q ss_pred HHHhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 280 AVKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 280 ~ik~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++.+.+ .+.+++.||+.|..|+.+++.. |||+|.+||++|--
T Consensus 261 ~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaL-GAD~v~igt~~liA 309 (368)
T PF01645_consen 261 RAHQALVKNGLRDRVSLIASGGLRTGDDVAKALAL-GADAVYIGTAALIA 309 (368)
T ss_dssp HHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHC-T-SEEE-SHHHHHH
T ss_pred HHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhc-CCCeeEecchhhhh
Confidence 333321 4899999999999999999986 99999999998754
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.9e-06 Score=83.46 Aligned_cols=138 Identities=19% Similarity=0.141 Sum_probs=82.6
Q ss_pred HHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHH
Q 013813 169 PEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 247 (436)
Q Consensus 169 ~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~ 247 (436)
+....+.++. +++|+|.|-++.- .+...|.+. -.+|..+.++++. .++||.++- -.+.+ .++.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgr-----t~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G~--V~t~e----~A~~ 204 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGT-----LVSAEHVST-SGEPLNLKEFIGE----LDVPVIAGG--VNDYT----TALH 204 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEecc-----chhhhccCC-CCCHHHHHHHHHH----CCCCEEEeC--CCCHH----HHHH
Confidence 3344455544 4669999999831 122222111 1256666555554 478998731 12222 3455
Q ss_pred HHHcCccEEEeccCccccc---CCCCCccCHHHHHHHHh-------hC---CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 248 LEDAGCSLLAVHGRTRDEK---DGKKFRADWNAIKAVKN-------AL---RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 248 le~aG~d~I~VHgRt~~~~---~~~~g~ad~~~i~~ik~-------~~---~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+.++|+|.|.+ |+..... ....+......+..+++ .. .+|||+.|||.+..|+.++|.. |||+||
T Consensus 205 ~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAl-GAdaV~ 282 (369)
T TIGR01304 205 LMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIAC-GADAVV 282 (369)
T ss_pred HHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHc-CCCEee
Confidence 55699999873 3222111 01111233344444432 12 3999999999999999999986 999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+|+.++.--+
T Consensus 283 iGt~~a~a~E 292 (369)
T TIGR01304 283 LGSPLARAAE 292 (369)
T ss_pred eHHHHHhhhc
Confidence 9999977554
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.3e-06 Score=81.00 Aligned_cols=89 Identities=26% Similarity=0.401 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.++|........ ....+++.++++.+.+++||...|||.+.+|++++++. |||.|++|..
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~---g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~-Ga~~vvlgs~ 103 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKE---GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDL-GVDRVIIGTA 103 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc---CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHc-CCCEEEEChH
Confidence 4788999999999999999965543311 12468899999999999999999999999999999985 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 104 ~l~d~~~~~~~~~ 116 (230)
T TIGR00007 104 AVENPDLVKELLK 116 (230)
T ss_pred HhhCHHHHHHHHH
Confidence 9999998887654
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=86.22 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=101.7
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~ 236 (436)
+..+-.+.|-..+....+..+++.|+|.|-|... + + .-..+.++++.+++.. +++|.+.
T Consensus 215 ~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a--~-----~--------~~~~~~~~i~~ik~~~p~~~v~ag----- 274 (479)
T PRK07807 215 RLRVAAAVGINGDVAAKARALLEAGVDVLVVDTA--H-----G--------HQEKMLEALRAVRALDPGVPIVAG----- 274 (479)
T ss_pred ccchHhhhccChhHHHHHHHHHHhCCCEEEEecc--C-----C--------ccHHHHHHHHHHHHHCCCCeEEee-----
Confidence 3344445555556666666777889998766531 1 1 1366888999999876 6788774
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCc---ccc-cCCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRT---RDE-KDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt---~~~-~~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tG 309 (436)
+. .+.+-++.+.++|+|.|-|--.+ +.. .+..-+.+++..+.++++ ..++|||+-|||.++.|+.++|.. |
T Consensus 275 nv-~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~-g 352 (479)
T PRK07807 275 NV-VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAA-G 352 (479)
T ss_pred cc-CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHc-C
Confidence 22 23445777888999999762111 111 122233578888888887 458999999999999999999996 9
Q ss_pred cceeeeehHHhhCCc
Q 013813 310 CEGVLSAESLLENPA 324 (436)
Q Consensus 310 aDgVmIGRgal~nP~ 324 (436)
||+||+|+.+..-.+
T Consensus 353 a~~v~~g~~~ag~~E 367 (479)
T PRK07807 353 ASNVMIGSWFAGTYE 367 (479)
T ss_pred CCeeeccHhhccCcc
Confidence 999999998876554
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=75.91 Aligned_cols=129 Identities=22% Similarity=0.227 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC-CChhhHHHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKM 247 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg-~~~~d~~~~ak~ 247 (436)
....++...++.|+|.||+-+ ++|.....+.+.+.+-++++++.+ ++|+.|=+-.+ .+.++....++.
T Consensus 71 ~K~~E~~~Av~~GAdEiDvv~----------n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~i 140 (211)
T TIGR00126 71 VKLYETKEAIKYGADEVDMVI----------NIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEI 140 (211)
T ss_pred HHHHHHHHHHHcCCCEEEeec----------chHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHH
Confidence 345555567788999999975 256656667888888888888776 56655533333 344566778889
Q ss_pred HHHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 248 LEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 248 le~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+.++|+|+|-.. |-. ++.+..+.++.+++.+ +++|-+.|||+|.+++.++++. |++-+...
T Consensus 141 a~eaGADfvKTsTGf~-------~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~a-Ga~riGts 204 (211)
T TIGR00126 141 CIDAGADFVKTSTGFG-------AGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEA-GASRIGAS 204 (211)
T ss_pred HHHhCCCEEEeCCCCC-------CCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-hhHHhCcc
Confidence 999999999443 221 1245566666666655 6999999999999999999987 88866443
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=81.93 Aligned_cols=136 Identities=20% Similarity=0.119 Sum_probs=82.7
Q ss_pred HHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH
Q 013813 172 LLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED 250 (436)
Q Consensus 172 ~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~ 250 (436)
..+-+ .+++.|+|.|-++..-. ...|+..- .++..+.++++. .++||.++- -.+ .+.++.+.+
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~-----~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG~--V~t----~e~A~~l~~ 206 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVV-----SAEHVSKE-GEPLNLKEFIYE----LDVPVIVGG--CVT----YTTALHLMR 206 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccch-----hhhccCCc-CCHHHHHHHHHH----CCCCEEEeC--CCC----HHHHHHHHH
Confidence 33444 34577999999985311 11122111 145555555444 478998741 112 234566667
Q ss_pred cCccEEEeccCccc----cc-CCCCCccCHHHHHHHHhh-------C---CCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 251 AGCSLLAVHGRTRD----EK-DGKKFRADWNAIKAVKNA-------L---RIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 251 aG~d~I~VHgRt~~----~~-~~~~g~ad~~~i~~ik~~-------~---~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+|||.|.+ |+... .. ....+.+.+..+.++++. . ++|||+.|||.+..|+.++|.. |||+||+
T Consensus 207 aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlal-GAd~Vm~ 284 (368)
T PRK08649 207 TGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIAC-GADAVML 284 (368)
T ss_pred cCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHc-CCCeecc
Confidence 99999977 44321 00 011112334444444321 1 5999999999999999999986 9999999
Q ss_pred ehHHhhCCcc
Q 013813 316 AESLLENPAL 325 (436)
Q Consensus 316 GRgal~nP~l 325 (436)
|+.+..-.+-
T Consensus 285 Gs~fa~t~Es 294 (368)
T PRK08649 285 GSPLARAAEA 294 (368)
T ss_pred cchhcccccC
Confidence 9999775553
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.4e-05 Score=72.94 Aligned_cols=128 Identities=16% Similarity=0.233 Sum_probs=83.0
Q ss_pred HHHHHcCCCcEE--EEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-C------CChhhHHHHH
Q 013813 175 AARRVEPYCDYV--DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-F------PNLQDTIKYA 245 (436)
Q Consensus 175 AA~~v~~g~D~I--dLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-g------~~~~d~~~~a 245 (436)
+.+.++.|+|+| .+|.|--. -....+.+.++.+..+ ..++|+.+-... | .+.++....+
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~~~-----------~~~~~~~i~~v~~~~~-~~g~~~iie~~~~g~~~~~~~~~~~i~~~~ 149 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGSEE-----------EREMLEELARVAAEAH-KYGLPLIAWMYPRGPAVKNEKDPDLIAYAA 149 (235)
T ss_pred HHHHHHCCCCEEEEEEecCCch-----------HHHHHHHHHHHHHHHH-HcCCCEEEEEeccCCcccCccCHHHHHHHH
Confidence 345567799998 45543100 0011123333433332 358888886543 1 1123333347
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCC--CCHHH----HHHHHHhcCcceeeeehHH
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV--RHMED----VQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI--~s~ed----a~~~l~~tGaDgVmIGRga 319 (436)
+.+.+.|+|+|-+.. ..+++.++++++...+||++.||+ .|.++ +.++++ .|++||.+||.+
T Consensus 150 ~~a~~~GaD~Ik~~~-----------~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~i 217 (235)
T cd00958 150 RIGAELGADIVKTKY-----------TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAME-AGAAGVAVGRNI 217 (235)
T ss_pred HHHHHHCCCEEEecC-----------CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCCcEEEechhh
Confidence 778899999997731 125788999999889999999987 66766 666676 499999999999
Q ss_pred hhCCccc
Q 013813 320 LENPALF 326 (436)
Q Consensus 320 l~nP~lf 326 (436)
+..++..
T Consensus 218 ~~~~dp~ 224 (235)
T cd00958 218 FQRPDPV 224 (235)
T ss_pred hcCCCHH
Confidence 9887643
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.3e-05 Score=73.51 Aligned_cols=152 Identities=18% Similarity=0.324 Sum_probs=91.2
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~ 238 (436)
+.+.|..-|...+.++++.+. .|++.|.+.+. + |.... +..+-.++++.+++.++.++.|.+-.
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~~~~-~~~~~~~~~~~i~~~~~~~~~v~l~~---- 66 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVM--------D--GHFVP-NLTFGPPVVKALRKHTDLPLDVHLMV---- 66 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecc--------c--CCCCC-ccccCHHHHHHHHhhCCCcEEEEeee----
Confidence 567888999999999997665 58999998521 0 11000 11111234455554434444333222
Q ss_pred hhHHHHHHHHHHcCccEEEeccCccc--------------------------c----------------c-CCCCC-ccC
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E----------------K-DGKKF-RAD 274 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~--------------------------~----------------~-~~~~g-~ad 274 (436)
.+..++++.+.++|+|+++||+...+ + . .+.++ ..+
T Consensus 67 ~d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~ 146 (211)
T cd00429 67 ENPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFI 146 (211)
T ss_pred CCHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccC
Confidence 12234566666777777777653210 0 0 01111 123
Q ss_pred H---HHHHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 275 W---NAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 275 ~---~~i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
| +.++++++.. ++||++.|||+. +++.++++. |+|+|.+|++++..+.....
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~-gad~iivgsai~~~~~~~~~ 206 (211)
T cd00429 147 PEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEA-GADVLVAGSALFGSDDYAEA 206 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHc-CCCEEEECHHHhCCCCHHHH
Confidence 3 3444555544 489999999995 999998875 99999999999987775443
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00012 Score=68.87 Aligned_cols=142 Identities=16% Similarity=0.286 Sum_probs=94.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+..+++-+--.|+..+ ++-+.++.|+|.|-+|+-+|. ..+.++++.+++ .++++.+-+-
T Consensus 52 ~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~~~~~----------------~~~~~~i~~~~~-~g~~~~~~~~--- 110 (206)
T TIGR03128 52 DRKVLADLKTMDAGEY-EAEQAFAAGADIVTVLGVADD----------------ATIKGAVKAAKK-HGKEVQVDLI--- 110 (206)
T ss_pred CCEEEEEEeeccchHH-HHHHHHHcCCCEEEEeccCCH----------------HHHHHHHHHHHH-cCCEEEEEec---
Confidence 4556666544466643 233446779999999965431 345667777665 4788887631
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+..+..+.++.+.+.|+|++.++..+..+... +..++.++++++... .+|...||| +.+.+.++++. |+|+|.+
T Consensus 111 ~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~---~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~-Ga~~v~v 185 (206)
T TIGR03128 111 NVKDKVKRAKELKELGADYIGVHTGLDEQAKG---QNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKL-GPDIVIV 185 (206)
T ss_pred CCCChHHHHHHHHHcCCCEEEEcCCcCcccCC---CCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHc-CCCEEEE
Confidence 11233444566677899999997544433221 345677888887664 455569999 78999999975 9999999
Q ss_pred ehHHhhCCc
Q 013813 316 AESLLENPA 324 (436)
Q Consensus 316 GRgal~nP~ 324 (436)
||+++..+.
T Consensus 186 Gsai~~~~d 194 (206)
T TIGR03128 186 GGAITKAAD 194 (206)
T ss_pred eehhcCCCC
Confidence 999887655
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-06 Score=83.03 Aligned_cols=89 Identities=24% Similarity=0.490 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.++|..-.+.. .+. +.+++.++++.+.+.+||.+.|||+|.+|++++++. ||+.|.+|+.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~-~g~--~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~-Ga~~Vvigt~ 104 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAK-EGR--GSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDA-GADRVVIGTE 104 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHC-CTH--HHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHT-T-SEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcc-cCc--hhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHh-CCCEEEeChH
Confidence 578889999999999999986543321 111 468899999999999999999999999999999996 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 105 ~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 105 ALEDPELLEELAE 117 (229)
T ss_dssp HHHCCHHHHHHHH
T ss_pred HhhchhHHHHHHH
Confidence 9999999988764
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.9e-06 Score=81.09 Aligned_cols=87 Identities=14% Similarity=0.286 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.++|-.-...- .+. +.+++.++++.+.+ +||...|||+|.++++++++. ||+-|+||+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~-~g~--~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~-Ga~rvvigT~ 104 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAI-ENS--VENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKL-GYRRQIVSSK 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcc-cCC--cchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHC-CCCEEEECch
Confidence 588999999999999999886554321 111 46889999999987 799999999999999999986 9999999999
Q ss_pred HhhCCccchhhh
Q 013813 319 LLENPALFAGFR 330 (436)
Q Consensus 319 al~nP~lf~~i~ 330 (436)
++.||.++.++.
T Consensus 105 a~~~p~~l~~~~ 116 (241)
T PRK14114 105 VLEDPSFLKFLK 116 (241)
T ss_pred hhCCHHHHHHHH
Confidence 999999998883
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-05 Score=74.89 Aligned_cols=154 Identities=20% Similarity=0.284 Sum_probs=99.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-- 234 (436)
..|+.||+.-||+......| ...|+|+|.+|.-|=... .+ .+.+..+...+.+.-+.+... +.|...+..
T Consensus 80 ~~p~GVnvL~nd~~aalaiA--~A~ga~FIRv~~~~g~~~--~d--~G~~~~~a~e~~r~R~~l~a~--v~ilaDV~~kh 151 (254)
T PF03437_consen 80 SVPVGVNVLRNDPKAALAIA--AATGADFIRVNVFVGAYV--TD--EGIIEGCAGELLRYRKRLGAD--VKILADVHVKH 151 (254)
T ss_pred CCCEEeeeecCCCHHHHHHH--HHhCCCEEEecCEEceec--cc--CccccccHHHHHHHHHHcCCC--eEEEeeechhh
Confidence 57999999998887544444 234789999996554322 11 122223333333333333222 444433332
Q ss_pred C--CChhhHHHHHHH-HHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 235 F--PNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 235 g--~~~~d~~~~ak~-le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+ ....+..+.++. ++..++|+|+|+|..... +++.+.++++++.+++||+.++|++ .+.+.++|+. ||
T Consensus 152 ~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~------~~~~~~l~~vr~~~~~PVlvGSGvt-~~Ni~~~l~~--AD 222 (254)
T PF03437_consen 152 SSPLATRDLEEAAKDAVERGGADAVIVTGKATGE------PPDPEKLKRVREAVPVPVLVGSGVT-PENIAEYLSY--AD 222 (254)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCEEEECCcccCC------CCCHHHHHHHHhcCCCCEEEecCCC-HHHHHHHHHh--CC
Confidence 1 111233344444 478899999999875432 5788999999999999999999996 7889999975 99
Q ss_pred eeeeehHHhhCCccch
Q 013813 312 GVLSAESLLENPALFA 327 (436)
Q Consensus 312 gVmIGRgal~nP~lf~ 327 (436)
|+.||+.+-.|=.+..
T Consensus 223 G~IVGS~~K~~G~~~n 238 (254)
T PF03437_consen 223 GAIVGSYFKKDGKWEN 238 (254)
T ss_pred EEEEeeeeeeCCEeCC
Confidence 9999987655544443
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.1e-05 Score=74.02 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=94.9
Q ss_pred CCCHHH--HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C-CChhh
Q 013813 166 ANDPEI--LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQD 240 (436)
Q Consensus 166 g~d~e~--~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g-~~~~d 240 (436)
|.++-. ..++-..++.|+|.||+=. ++|...-.+++.+.+-++++++.++-++.+|+=+ + .+.++
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee 141 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE 141 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence 444444 4455567788999999853 2466666789999999999999986545666533 2 34556
Q ss_pred HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
....++.+.++|+|+|-- ..+. ..+.+-.+.++.+++.+ .+.|=++|||+|.+|+..+++. |+.-+.
T Consensus 142 ~~~A~~i~~~aGAdFVKT----STGf--~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~a-ga~RiG 210 (228)
T COG0274 142 KRKACEIAIEAGADFVKT----STGF--SAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEA-GATRIG 210 (228)
T ss_pred HHHHHHHHHHhCCCEEEc----CCCC--CCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHH-hHHHhc
Confidence 677888899999999932 2211 12356677788888876 4889999999999999999997 655443
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.5e-05 Score=72.89 Aligned_cols=143 Identities=11% Similarity=0.242 Sum_probs=94.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecC-CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~G-CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
.+.++.+-|+-++|+++.+.+ .+.|+|+|-+|+| +. .+...+.++.+++. ++-+.+=+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~--~~~gad~v~vH~~q~~----------------~d~~~~~~~~i~~~-g~~iGls~-- 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF--AKAGASIFTFHIEQAS----------------TIHLHRLIQQIKSA-GMKAGVVL-- 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH--HHcCCCEEEEeecccc----------------chhHHHHHHHHHHC-CCeEEEEE--
Confidence 456788999999999988776 5678999999976 11 12334555555433 33222222
Q ss_pred CCChhhHHHHHHHHHHcC-ccEE---EeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 235 FPNLQDTIKYAKMLEDAG-CSLL---AVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG-~d~I---~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tG 309 (436)
.+ ....+.++.+.+.| +|+| .++..+..+. ..+..++.++++++. .++||.+.||| +.+.+.++++. |
T Consensus 123 ~~--~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~---~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~a-G 195 (229)
T PLN02334 123 NP--GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS---FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEA-G 195 (229)
T ss_pred CC--CCCHHHHHHHHhccCCCEEEEEEEecCCCccc---cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHc-C
Confidence 11 12233444454553 9999 4554333321 113345677778776 46899999999 58999998885 9
Q ss_pred cceeeeehHHhhCCccc
Q 013813 310 CEGVLSAESLLENPALF 326 (436)
Q Consensus 310 aDgVmIGRgal~nP~lf 326 (436)
+|+|.+|++++..+..-
T Consensus 196 ad~vvvgsai~~~~d~~ 212 (229)
T PLN02334 196 ANVIVAGSAVFGAPDYA 212 (229)
T ss_pred CCEEEEChHHhCCCCHH
Confidence 99999999988766643
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.2e-05 Score=77.21 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=98.8
Q ss_pred CCEEEEecCC--CHHHHHHHHHHHc-CCCcEEEEec--CCCc--hhhhcCccccccc--CChHHHHHHHHHHh-cccCcc
Q 013813 158 RPLFVQFCAN--DPEILLNAARRVE-PYCDYVDINL--GCPQ--RIARRGNYGAFLM--DNLPLVKSLVEKLA-LNLNVP 227 (436)
Q Consensus 158 ~plivQL~g~--d~e~~~~AA~~v~-~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll--~~p~~v~eIv~av~-~~~~iP 227 (436)
..++.=|... +.+.+.++++.+. .|+|.|||-+ .-|. +.+.....--+|- -+.+.+.++++.++ +..++|
T Consensus 10 ~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 10 KALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp TEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 3455555554 5588889997665 5999999985 4454 1111110001111 24677888999999 777899
Q ss_pred EEEEeccCCCh---hhHHHHHHHHHHcCccEEEecc--------------------------Cccc--------------
Q 013813 228 VSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHG--------------------------RTRD-------------- 264 (436)
Q Consensus 228 VsVKiRlg~~~---~d~~~~ak~le~aG~d~I~VHg--------------------------Rt~~-------------- 264 (436)
+.+=.= .+. ....+|++.+.++|+|+++|.. -|..
T Consensus 90 ivlm~Y--~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFi 167 (259)
T PF00290_consen 90 IVLMTY--YNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFI 167 (259)
T ss_dssp EEEEE---HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEE
T ss_pred EEEEee--ccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEE
Confidence 876521 111 1234577777778888877611 0100
Q ss_pred ---ccCCCCCc---c---CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 265 ---EKDGKKFR---A---DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 265 ---~~~~~~g~---a---d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
...+-+|. . --+.++.+|+.+++||...=||+++++++++. . ++|||+||++++.
T Consensus 168 Y~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~-~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 168 YLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-A-GADGVIVGSAFVK 231 (259)
T ss_dssp EEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-T-TSSEEEESHHHHH
T ss_pred EeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-c-cCCEEEECHHHHH
Confidence 00111111 1 13668889999999999999999999999988 4 9999999999864
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=76.63 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=70.5
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+.+++..+|...+..|...+-+- .+.. ..+.+.++++++.+ ++|++..|||+|.++++++++. |||+|.
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe-~SG~-------~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~a-GAD~VV 202 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE-YSGA-------YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEA-GADTIV 202 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC-CCCC-------cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHc-CCCEEE
Confidence 356778889999999996555554 2111 25678999999998 9999999999999999999986 999999
Q ss_pred eehHHhhCCccchhh
Q 013813 315 SAESLLENPALFAGF 329 (436)
Q Consensus 315 IGRgal~nP~lf~~i 329 (436)
+|..++.||.++.++
T Consensus 203 VGsai~~~p~~~~~~ 217 (219)
T cd02812 203 VGNIVEEDPNAALET 217 (219)
T ss_pred ECchhhCCHHHHHHH
Confidence 999999999988754
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=78.99 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=70.5
Q ss_pred hH-HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 240 DT-IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 240 d~-~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
++ .+.|+.+++.|+++|+|..= + ..+++.++++.+.+++||...|||++ ++++++++. ||+.|.||..
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVDL------g---~~n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~a-Ga~rVvIGS~ 106 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIML------G---PNNDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDE-GASHVIVTSW 106 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEC------C---CCcHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHc-CCCEEEECcH
Confidence 34 88999999999999988644 1 22889999999999999999999997 999999996 9999999999
Q ss_pred HhhC----Cccchhhhh
Q 013813 319 LLEN----PALFAGFRT 331 (436)
Q Consensus 319 al~n----P~lf~~i~~ 331 (436)
++.| |.++.++..
T Consensus 107 av~~~~i~~~~~~~i~~ 123 (253)
T TIGR02129 107 LFTKGKFDLKRLKEIVS 123 (253)
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 9998 668877654
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.07 E-value=1e-05 Score=87.19 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCH-----------HHHHHHHH
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-----------EDVQKCLE 306 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~-----------eda~~~l~ 306 (436)
..+++++|+...+.|+|.|++-.-+...........+++.|+++.+.+.+||.+.|||+|. ++++++|+
T Consensus 266 ~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 266 LGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 4578999999999999999997766531111111356899999999999999999999997 66899998
Q ss_pred hcCcceeeeehHHhhCC
Q 013813 307 ETGCEGVLSAESLLENP 323 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP 323 (436)
. |||-|.||++++.||
T Consensus 346 ~-GadkV~i~s~Av~~~ 361 (538)
T PLN02617 346 S-GADKISIGSDAVYAA 361 (538)
T ss_pred c-CCCEEEEChHHHhCh
Confidence 6 999999999999986
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.6e-05 Score=72.20 Aligned_cols=144 Identities=16% Similarity=0.323 Sum_probs=97.9
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEec
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIR 233 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiR 233 (436)
+..+|...|...+.+-.+.++. |+|.+-+-. | +|+- .+| -++++++++. +++|+.|=+=
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~-----tfg----------~~~i~~i~~~~~~~~~dvHLM 66 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL-----TFG----------APICKALRDYGITAPIDVHLM 66 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCcc-----ccC----------HHHHHHHHHhCCCCCEEEEec
Confidence 3467888999999998887765 788755542 3 2331 122 3456677765 5777766632
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc-------------------------------------------cCCCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKK 270 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-------------------------------------------~~~~~ 270 (436)
. ++...+++.+.++|+|.|++|.-.... ..++.
T Consensus 67 v----~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfg 142 (220)
T PRK08883 67 V----KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFG 142 (220)
T ss_pred c----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCC
Confidence 2 356678888889999999998532100 01122
Q ss_pred C----ccCHHHHHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 271 F----RADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 271 g----~ad~~~i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
| +..++.++++++.. ++||.+-|||+ .+.+..+.+. |||++.+|+++...++
T Consensus 143 Gq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~a-GAd~vVvGSaIf~~~d 203 (220)
T PRK08883 143 GQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEA-GADMFVAGSAIFGQPD 203 (220)
T ss_pred CceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHc-CCCEEEEeHHHhCCCC
Confidence 2 22355677777654 48999999999 8999998886 9999999999876544
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.6e-05 Score=74.13 Aligned_cols=122 Identities=19% Similarity=0.158 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccC-CChh-hHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVF-PNLQ-DTIKYA 245 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg-~~~~-d~~~~a 245 (436)
-...++...++.|+|.||+=+ ++|..+..+.+.+.+-+++|++.++ .++-|=+-.+ .+.+ +....+
T Consensus 84 ~K~~Ea~~Ai~~GAdEiD~Vi----------nig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~ 153 (257)
T PRK05283 84 IALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKAS 153 (257)
T ss_pred HHHHHHHHHHHcCCCEEeeec----------cHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHH
Confidence 345566667788999999854 2566666788999999998888764 3443333333 2334 467788
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-------CCcEEEccCCCCHHHHHHHHHh
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-------RIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-------~iPVianGGI~s~eda~~~l~~ 307 (436)
+.+.++|+|+|-- ..++. ++.+..+.++.+++.+ ++-|-++|||+|.+++.++++.
T Consensus 154 ~~a~~aGADFVKT----STGf~--~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a 216 (257)
T PRK05283 154 EIAIKAGADFIKT----STGKV--PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL 216 (257)
T ss_pred HHHHHhCCCEEEc----CCCCC--CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH
Confidence 9999999999932 22211 1245666666666553 4789999999999999999986
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=79.15 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|+++|+|..=.. + .+.+++.+++|++ +++||-..|||++ ++++++|+. ||+-|+||+.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g--~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~~-Ga~rViigT~ 113 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA----D--DASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYLDA-GASHVIVTSY 113 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC----C--CcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHHHc-CCCEEEEchH
Confidence 5789999999999999998864422 1 1456899999999 8899999999996 999999986 9999999999
Q ss_pred HhhC----Cccchhhhh
Q 013813 319 LLEN----PALFAGFRT 331 (436)
Q Consensus 319 al~n----P~lf~~i~~ 331 (436)
++.| |.++.++..
T Consensus 114 Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 114 VFRDGQIDLERLKDLVR 130 (262)
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 9999 999887754
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.9e-05 Score=70.22 Aligned_cols=123 Identities=21% Similarity=0.293 Sum_probs=84.3
Q ss_pred HHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC-CChhhHHHHHHHHHH
Q 013813 173 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLED 250 (436)
Q Consensus 173 ~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg-~~~~d~~~~ak~le~ 250 (436)
.++-+.++.|+|+||+.+ .+|..+-.+.+.+.+-+.++++.+ ++|+-|=+-.+ .+.+.....++.+.+
T Consensus 73 ~eve~A~~~GAdevdvv~----------~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e 142 (203)
T cd00959 73 AEAREAIADGADEIDMVI----------NIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIE 142 (203)
T ss_pred HHHHHHHHcCCCEEEEee----------cHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 334456778999999975 245444556677777777777666 45555532233 234566778889999
Q ss_pred cCccEEEec-cCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 251 AGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 251 aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+|+|+|-.. |-.. +.+..+.+..+++.+ ++||.++|||+|.+++.++++. ||+-+
T Consensus 143 ~GaD~IKTsTG~~~-------~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~-g~~ri 200 (203)
T cd00959 143 AGADFIKTSTGFGP-------GGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEA-GATRI 200 (203)
T ss_pred hCCCEEEcCCCCCC-------CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHh-Chhhc
Confidence 999999553 2221 235556555555554 6999999999999999999986 88754
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=77.01 Aligned_cols=89 Identities=26% Similarity=0.399 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+++.+.|+.+.+.|+..+++..=+.... .++-+.++++++.+.+++||-..|||+|.++++++++. |++-|.+|+.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~---g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~-G~~rViiGt~ 106 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA---GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDA-GVARVIIGTA 106 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecccccc---CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHC-CCCEEEEecc
Confidence 5788999999999999998864443211 12567899999999999999999999999999999995 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 107 av~~p~~v~~~~~ 119 (241)
T COG0106 107 AVKNPDLVKELCE 119 (241)
T ss_pred eecCHHHHHHHHH
Confidence 9999999988764
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=71.12 Aligned_cols=161 Identities=22% Similarity=0.256 Sum_probs=101.2
Q ss_pred CCEEEEecC--CCHHHHHHHHHH-HcCCCcEEEEec--CCCc---hhhhcCccccccc--CChHHHHHHHHHHhcc-cCc
Q 013813 158 RPLFVQFCA--NDPEILLNAARR-VEPYCDYVDINL--GCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LNV 226 (436)
Q Consensus 158 ~plivQL~g--~d~e~~~~AA~~-v~~g~D~IdLN~--GCP~---~~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~-~~i 226 (436)
.-+|.=+.+ .+++...++++. ++.|+|.|||-+ .-|. +.+++.+ =-+|- -..+.+.++++.+++. .++
T Consensus 17 ~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~-~rAL~~g~t~~~~lel~~~~r~~~~~~ 95 (265)
T COG0159 17 GALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAH-LRALAAGVTLEDTLELVEEIRAKGVKV 95 (265)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHH-HHHHHCCCCHHHHHHHHHHHHhcCCCC
Confidence 345544444 367888888875 567999999985 4454 1111110 11121 2567888999999854 678
Q ss_pred cEEEEeccCC-ChhhHHHHHHHHHHcCccEEEe-----------------cc--------Cccc------------c---
Q 013813 227 PVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAV-----------------HG--------RTRD------------E--- 265 (436)
Q Consensus 227 PVsVKiRlg~-~~~d~~~~ak~le~aG~d~I~V-----------------Hg--------Rt~~------------~--- 265 (436)
|+.+=.=..+ -.....+|.+.+.++|+|++.| || -|.. +
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY 175 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIY 175 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 8877532211 0123345666677777777665 11 1100 0
Q ss_pred ---cCCCCC---c--c-CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 266 ---KDGKKF---R--A-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 266 ---~~~~~g---~--a-d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
..+-+| + . --+.++++|+..++||...=||+++++++++.+. ||||.+|+++..
T Consensus 176 ~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV~ 238 (265)
T COG0159 176 YVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIVK 238 (265)
T ss_pred EEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHHH
Confidence 011111 1 1 1366888899899999999999999999999986 999999998754
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=9e-05 Score=70.32 Aligned_cols=151 Identities=15% Similarity=0.323 Sum_probs=87.9
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~ 238 (436)
+.++|...|+..+.+.++.+. .|+|.|.+-.. + |. +..+.....+.++++++.+..++.|-+-.
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v---- 70 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM--------D--GH-FVPNLTIGPPVVEAIRKVTKLPLDVHLMV---- 70 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc--------c--CC-cCCCcCcCHHHHHHHHhcCCCcEEEEeee----
Confidence 678899999999999997664 58999999421 1 11 11111123445555554443333222212
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccc------------------------------------------c-CCCCC-ccC
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDE------------------------------------------K-DGKKF-RAD 274 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~------------------------------------------~-~~~~g-~ad 274 (436)
.+..++++.+.++|+|+|+||+...+. . .+.++ ..+
T Consensus 71 ~d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 150 (220)
T PRK05581 71 ENPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCccccc
Confidence 123334455557777877776532100 0 01111 123
Q ss_pred HHHHH---HHHhhCC-----CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 275 WNAIK---AVKNALR-----IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 275 ~~~i~---~ik~~~~-----iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
|..+. ++++..+ .+|...|||+. +++.++++. |+|+|.+|++++.+++...
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~-GaD~vvvgSai~~~~d~~~ 209 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEA-GADVFVAGSAVFGAPDYKE 209 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHc-CCCEEEEChhhhCCCCHHH
Confidence 44333 3443322 33568899997 899998874 9999999999998877544
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=76.09 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+.+.|++.++|-.-.... + ...+.+.++++.+....||...|||+|.+|++++++. ||+-|.+|+.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~--~--~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~-Ga~kvvigt~ 104 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAE--G--VGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSL-DVNALVFSTI 104 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcC--C--CcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHC-CCCEEEECch
Confidence 478899999999999999986554332 1 1457799999988544599999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.+++++..
T Consensus 105 a~~~p~~~~~~~~ 117 (232)
T PRK13586 105 VFTNFNLFHDIVR 117 (232)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999987653
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0008 Score=63.51 Aligned_cols=183 Identities=18% Similarity=0.186 Sum_probs=105.7
Q ss_pred CCCcHHHHHHHHHhCCCeEE-eC-cccchhhccChhhhhhhhhccCCCCCEEEEec-CCCHHHHHHHHHHHcCCCcEEEE
Q 013813 112 DNSELPFRMLCRRYGAEAAY-TP-MLHSRIFTESEKYRNEEFATCKEDRPLFVQFC-ANDPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 112 gvtd~~fR~l~~~~Ga~l~~-Te-misa~~l~~~~~~~~~~~~~~~~e~plivQL~-g~d~e~~~~AA~~v~~g~D~IdL 188 (436)
|+++..-=..|.+.|++++- -. --|.+.+.. +........++ ...-.|-++ ..+++.+.+.+. +.++|+|.|
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~--~~a~~l~~~~~-~~~~~V~v~vn~~~~~i~~ia~--~~~~d~Vql 79 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIFAPKSPRYVSP--EQAREIVAALP-PFVKRVGVFVNEDLEEILEIAE--ELGLDVVQL 79 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecCCCCCCCCCH--HHHHHHHHhCC-CCCcEEEEEeCCCHHHHHHHHH--hcCCCEEEE
Confidence 56666665778888987532 11 122232211 11111112222 211223334 445565555543 337899999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
|-.- +++ .++.+++..+.++...+.+... ...+. ......|+|++.+...+.....+
T Consensus 80 hg~e----------------~~~----~~~~l~~~~~~~~i~~i~~~~~--~~~~~-~~~~~~~aD~il~dt~~~~~~Gg 136 (203)
T cd00405 80 HGDE----------------SPE----YCAQLRARLGLPVIKAIRVKDE--EDLEK-AAAYAGEVDAILLDSKSGGGGGG 136 (203)
T ss_pred CCCC----------------CHH----HHHHHHhhcCCcEEEEEecCCh--hhHHH-hhhccccCCEEEEcCCCCCCCCC
Confidence 8211 222 2344555456666644444322 11221 23345789999886655432211
Q ss_pred CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 269 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 269 ~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.....+|+.+++++ .++||++.||| +++.+.++++..+++||-+++++...|-.
T Consensus 137 ~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 137 TGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 11257999988876 68999999999 89999999997449999999998877664
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00038 Score=65.16 Aligned_cols=142 Identities=19% Similarity=0.253 Sum_probs=95.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
.+.|+++.+.-.++... .+-...+.|+|+|-++.-. .++.+.++++.+++ .++++.+=+ +
T Consensus 52 ~~~~i~~~~~v~~~~~~-~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~-~g~~~~v~~-~- 111 (202)
T cd04726 52 PDKIIVADLKTADAGAL-EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKK-YGKEVQVDL-I- 111 (202)
T ss_pred CCCEEEEEEEeccccHH-HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHH-cCCeEEEEE-e-
Confidence 46789888887777532 1122356799999999421 13446677777764 355555421 1
Q ss_pred CChhhHHHHHHHHHHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+..+..+..+ +.+.|+|++.++ +++.. ..+ .....+.++++++..++||++.|||+ .+++.++++. |+|+|.
T Consensus 112 -~~~t~~e~~~-~~~~~~d~v~~~~~~~~~-~~~--~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~~-Gad~vv 184 (202)
T cd04726 112 -GVEDPEKRAK-LLKLGVDIVILHRGIDAQ-AAG--GWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKKA-GADIVI 184 (202)
T ss_pred -CCCCHHHHHH-HHHCCCCEEEEcCccccc-ccC--CCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHhc-CCCEEE
Confidence 1123334444 667899999885 33322 111 23456778888876789999999996 9999999986 999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+|+++.....
T Consensus 185 vGsai~~~~d 194 (202)
T cd04726 185 VGRAITGAAD 194 (202)
T ss_pred EeehhcCCCC
Confidence 9999876555
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.3e-05 Score=75.37 Aligned_cols=88 Identities=19% Similarity=0.131 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.+.++.+++.|+..++|-.=.... + .+.+.+.++++.+.+.+||...|||+|.++++++++. |||-|++|+.
T Consensus 31 ~~p~~~a~~~~~~g~~~lhivDLd~a~--g--~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~-Ga~~vvigT~ 105 (243)
T TIGR01919 31 GSLESAAKWWEQGGAEWIHLVDLDAAF--G--GGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTG-GRARVNGGTA 105 (243)
T ss_pred CCHHHHHHHHHhCCCeEEEEEECCCCC--C--CcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHc-CCCEEEECch
Confidence 466788888999999998875332221 1 1467899999999999999999999999999999996 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||+++.++..
T Consensus 106 a~~~p~~~~~~~~ 118 (243)
T TIGR01919 106 ALENPWWAAAVIR 118 (243)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999987653
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00046 Score=72.67 Aligned_cols=134 Identities=18% Similarity=0.235 Sum_probs=88.4
Q ss_pred EecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHH
Q 013813 163 QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 163 QL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~ 242 (436)
.+++. +.... -..++.|+|+|-++... +...+.++++.+++ .++++.+.+ + +..+..
T Consensus 65 kl~d~-g~~~v--~~a~~aGAdgV~v~g~~----------------~~~~~~~~i~~a~~-~G~~~~~g~-~--s~~t~~ 121 (430)
T PRK07028 65 KTMDT-GAIEV--EMAAKAGADIVCILGLA----------------DDSTIEDAVRAARK-YGVRLMADL-I--NVPDPV 121 (430)
T ss_pred eeccc-hHHHH--HHHHHcCCCEEEEecCC----------------ChHHHHHHHHHHHH-cCCEEEEEe-c--CCCCHH
Confidence 44554 44322 23356788998876211 11224566666665 477766642 1 212334
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+.++.+.+.|+|+|.++.....+.. +...++.++++++..++||++.||| +.+.+.++++. |+|+|.+|++++..
T Consensus 122 e~~~~a~~~GaD~I~~~pg~~~~~~---~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~a-GAdgv~vGsaI~~~ 196 (430)
T PRK07028 122 KRAVELEELGVDYINVHVGIDQQML---GKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAA-GADIVIVGGNIIKS 196 (430)
T ss_pred HHHHHHHhcCCCEEEEEeccchhhc---CCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHc-CCCEEEEChHHcCC
Confidence 4567778899999988743322211 1234678999998889999999999 57889999886 99999999999876
Q ss_pred Cc
Q 013813 323 PA 324 (436)
Q Consensus 323 P~ 324 (436)
+.
T Consensus 197 ~d 198 (430)
T PRK07028 197 AD 198 (430)
T ss_pred CC
Confidence 54
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.7e-05 Score=75.36 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.++|-.-.... + ...+.+.++++.+.+.+||...|||++.+|+++++.. ||+-|.+|+.
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~--~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~-Ga~~viigt~ 109 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM--G--RGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKR-GASRVIVGTE 109 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc--C--CCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHc-CCCeEEEcce
Confidence 478899999999999999987665431 2 2578899999999999999999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.| .++.++..
T Consensus 110 ~~~~-~~~~~~~~ 121 (233)
T cd04723 110 TLPS-DDDEDRLA 121 (233)
T ss_pred eccc-hHHHHHHH
Confidence 9999 88887654
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00017 Score=70.85 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=98.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-- 234 (436)
..|+.||+.-||+......| ...|+|+|.+|.-|-.. + ++ -+.+..+...+.+.-+.+.. ++.|...++.
T Consensus 79 ~~p~GvnvL~nd~~aal~iA--~a~ga~FIRv~~~~g~~-~-~d--~G~~~~~a~e~~r~r~~l~~--~v~i~adV~~kh 150 (257)
T TIGR00259 79 SIPLGINVLRNDAVAALAIA--MAVGAKFIRVNVLTGVY-A-SD--QGIIEGNAGELIRYKKLLGS--EVKILADIVVKH 150 (257)
T ss_pred CCCeeeeeecCCCHHHHHHH--HHhCCCEEEEccEeeeE-e-cc--cccccccHHHHHHHHHHcCC--CcEEEeceeecc
Confidence 46899999999887544433 23478999998544332 1 11 11333344444444444442 3444333322
Q ss_pred CC--ChhhHHHHHHHHHHcC-ccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 235 FP--NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 235 g~--~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGa 310 (436)
+. ......+.++.....| +|+|+|+|..... +.||+.++.+++.. ++||+.+|||+ ++.+.++++. +
T Consensus 151 ~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~------~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~~--a 221 (257)
T TIGR00259 151 AVHLGNRDLESIALDTVERGLADAVILSGKTTGT------EVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLSI--A 221 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCC------CCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHhh--C
Confidence 11 1234556677666655 9999999875432 57999999999855 79999999996 7999999985 9
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|||.+|+++= +|-
T Consensus 222 dGviVgS~~K-~~G 234 (257)
T TIGR00259 222 DGVIVATTIK-KDG 234 (257)
T ss_pred CEEEECCCcc-cCC
Confidence 9999998865 444
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.1e-05 Score=74.91 Aligned_cols=134 Identities=18% Similarity=0.239 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc---ccCccEEEEeccCCCh--------hh
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLNVPVSCKIRVFPNL--------QD 240 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~---~~~iPVsVKiRlg~~~--------~d 240 (436)
..++.+.++.|+|+|++-+- +|...-.+.+.+.+.++.+++ ..++||.+=.-+ .+. +.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeecc----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHH
Confidence 56666778899999998641 222222334444444444443 347888777322 111 13
Q ss_pred HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc----EEEccCC------CCHHHHHHHHHhcCc
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP----VLANGNV------RHMEDVQKCLEETGC 310 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP----VianGGI------~s~eda~~~l~~tGa 310 (436)
+...++.+.++|+|+|-..-.. ..+...-+.+.++++.+...+| |.++||| .+.+++.++++. ||
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~----~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~a-Ga 222 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGK----PVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEA-GA 222 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SS----SSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHT-TH
T ss_pred HHHHHHHHHHhCCCEEEecCCc----cccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHc-CC
Confidence 5677888899999999553221 1111123445556666666789 9999999 999999999997 99
Q ss_pred --ceeeeehHHhh
Q 013813 311 --EGVLSAESLLE 321 (436)
Q Consensus 311 --DgVmIGRgal~ 321 (436)
-|++.||.++.
T Consensus 223 ~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 223 DRIGTSSGRNIWQ 235 (236)
T ss_dssp SEEEEEEHHHHHT
T ss_pred hhHHHHHHHHHHc
Confidence 89999998764
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00019 Score=68.17 Aligned_cols=149 Identities=21% Similarity=0.301 Sum_probs=106.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEE-ecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDI-NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdL-N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiR 233 (436)
..-|+.|+ +-+|+.|..| +++|+|.||| |+.|=+.. | ..-..+.+.++.++.|+-+ +++++|-+-
T Consensus 60 s~lPICVS--aVep~~f~~a---V~AGAdliEIGNfDsFY~q------G--r~f~a~eVL~Lt~~tR~LLP~~~LsVTVP 126 (242)
T PF04481_consen 60 SNLPICVS--AVEPELFVAA---VKAGADLIEIGNFDSFYAQ------G--RRFSAEEVLALTRETRSLLPDITLSVTVP 126 (242)
T ss_pred CCCCeEee--cCCHHHHHHH---HHhCCCEEEecchHHHHhc------C--CeecHHHHHHHHHHHHHhCCCCceEEecC
Confidence 46788876 6788888766 4679999999 66653321 1 1224577888888888766 688888876
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCC-C-CC-----ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-K-KF-----RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~-~-~g-----~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
-....++-+++|..|+++|+|.|.--|.+...... + .| .+.+.....|.+.+++||+..-|+.+.--= -.+.
T Consensus 127 HiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~P-mAia 205 (242)
T PF04481_consen 127 HILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAP-MAIA 205 (242)
T ss_pred ccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHH-HHHH
Confidence 55567788899999999999999888877643211 0 00 123444556778889999999999876533 3344
Q ss_pred hcCcceeeeehHH
Q 013813 307 ETGCEGVLSAESL 319 (436)
Q Consensus 307 ~tGaDgVmIGRga 319 (436)
.||.||.||.+.
T Consensus 206 -aGAsGVGVGSav 217 (242)
T PF04481_consen 206 -AGASGVGVGSAV 217 (242)
T ss_pred -cCCcccchhHHh
Confidence 399999999765
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00049 Score=66.28 Aligned_cols=147 Identities=17% Similarity=0.206 Sum_probs=92.6
Q ss_pred CCCCEEEEecC-CCHHHHHHHHHHHcC--CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 156 EDRPLFVQFCA-NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 156 ~e~plivQL~g-~d~e~~~~AA~~v~~--g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
.+..+..+-.| .+.++....|++..+ +.+.|-|-.- .+ .-.|+-|+-...+-.+.+.+. ++-|.--+
T Consensus 61 ~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi-------~D--~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~ 130 (247)
T PF05690_consen 61 SGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVI-------GD--DKTLLPDPIETLKAAEILVKE-GFVVLPYC 130 (247)
T ss_dssp CTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--B-------S---TTT--B-HHHHHHHHHHHHHT-T-EEEEEE
T ss_pred cCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEe-------CC--CCCcCCChhHHHHHHHHHHHC-CCEEeecC
Confidence 45566777666 578999999988754 4688777631 11 124666766655555555432 44444332
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
. +| .-+|+.|+++||..|---|-... .+.|-.+...++.+.+..++|||.-+||.++.|+..+++. |||+
T Consensus 131 --~---~D-~v~akrL~d~GcaavMPlgsPIG---Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl-G~da 200 (247)
T PF05690_consen 131 --T---DD-PVLAKRLEDAGCAAVMPLGSPIG---SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL-GADA 200 (247)
T ss_dssp ------S--HHHHHHHHHTT-SEBEEBSSSTT---T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHT-T-SE
T ss_pred --C---CC-HHHHHHHHHCCCCEEEecccccc---cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc-CCce
Confidence 1 23 34799999999999866554332 2334567788999999999999999999999999999997 9999
Q ss_pred eeeehHHhhC
Q 013813 313 VLSAESLLEN 322 (436)
Q Consensus 313 VmIGRgal~n 322 (436)
|++.++...-
T Consensus 201 VLvNTAiA~A 210 (247)
T PF05690_consen 201 VLVNTAIAKA 210 (247)
T ss_dssp EEESHHHHTS
T ss_pred eehhhHHhcc
Confidence 9999987543
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=67.65 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=60.9
Q ss_pred HHHHHHcCccEEEeccCccccc-CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++.+.+.|+|+|.+........ .+...+..++.++++++..++||++.|||. .+++.++++. |+|+|.+|++++.++
T Consensus 108 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~-Ga~~i~~g~~i~~~~ 185 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAA-GADGVAVISAITGAD 185 (196)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHc-CCCEEEEehHhhcCC
Confidence 4556778999998865533211 111125678999999988899999999995 7999998885 999999999998766
Q ss_pred ccc
Q 013813 324 ALF 326 (436)
Q Consensus 324 ~lf 326 (436)
...
T Consensus 186 ~~~ 188 (196)
T cd00564 186 DPA 188 (196)
T ss_pred CHH
Confidence 543
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00057 Score=66.51 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=97.1
Q ss_pred EEEEecC-CCHHHHHHHHHHHcC-C-------CcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE
Q 013813 160 LFVQFCA-NDPEILLNAARRVEP-Y-------CDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 229 (436)
Q Consensus 160 livQL~g-~d~e~~~~AA~~v~~-g-------~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs 229 (436)
+..+-.| .+.++....|++..+ + .+.|-|-. |-| -.|+-|+-...+..+.+.+. ++-|.
T Consensus 73 ~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~----------~~LlPD~~etl~Aae~Lv~e-GF~Vl 141 (267)
T CHL00162 73 LLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDP----------KYLLPDPIGTLKAAEFLVKK-GFTVL 141 (267)
T ss_pred ECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCC----------cccCCChHHHHHHHHHHHHC-CCEEe
Confidence 3344333 568888888876643 2 46666652 222 35777776666665555432 34443
Q ss_pred EEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 230 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 230 VKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tG 309 (436)
.- + .+|. -+|++|+++||..|---|-... .+.|-.+...++.|.+..++||+..+||.+++|+..+++. |
T Consensus 142 PY--~---~~D~-v~a~rLed~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmEl-G 211 (267)
T CHL00162 142 PY--I---NADP-MLAKHLEDIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMEL-G 211 (267)
T ss_pred ec--C---CCCH-HHHHHHHHcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHc-C
Confidence 33 1 2333 4799999999999866544332 2334567788999999999999999999999999999997 9
Q ss_pred cceeeeehHHhh
Q 013813 310 CEGVLSAESLLE 321 (436)
Q Consensus 310 aDgVmIGRgal~ 321 (436)
||||.+.+|+..
T Consensus 212 aDgVL~nSaIak 223 (267)
T CHL00162 212 ASGVLLNTAVAQ 223 (267)
T ss_pred CCEEeecceeec
Confidence 999999999864
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.8e-05 Score=71.07 Aligned_cols=85 Identities=18% Similarity=0.302 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHH-cCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~-aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++....+..+.+ .|...|-+-.... +..+.+.+.++.+++.+ ++|++..|||+|.++++++++. |||+|++|
T Consensus 135 ~~~aa~~~lA~~~~g~~~vYlE~gs~-----~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~a-GAD~VVVG 208 (223)
T TIGR01768 135 EDLAAYAAMAEEMLGMPIIYLEAGSG-----APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEA-GADTIVTG 208 (223)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCC-----CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHc-CCCEEEEC
Confidence 444444444444 6777666642211 12256789999999998 9999999999999999999986 99999999
Q ss_pred hHHhhCCccchhh
Q 013813 317 ESLLENPALFAGF 329 (436)
Q Consensus 317 Rgal~nP~lf~~i 329 (436)
..++.||.++.++
T Consensus 209 s~~~~dp~~~~~~ 221 (223)
T TIGR01768 209 NVIEEDVDKALET 221 (223)
T ss_pred cHHhhCHHHHHHh
Confidence 9999999877653
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0006 Score=65.91 Aligned_cols=144 Identities=17% Similarity=0.366 Sum_probs=98.2
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEec
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 233 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiR 233 (436)
+.++|++.|+..+.+-++.++. |+|.+-+-. | +|+. .+| -++++++++.. ++++.+|+-
T Consensus 9 i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~-----~~G----------~~~v~~lr~~~~~~~lDvHLm 73 (228)
T PTZ00170 9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL-----SFG----------PPVVKSLRKHLPNTFLDCHLM 73 (228)
T ss_pred EehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc-----CcC----------HHHHHHHHhcCCCCCEEEEEC
Confidence 6788999999999999988865 788765553 2 3331 122 35667777776 899999964
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc-----------c-----------------------------------C
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------K-----------------------------------D 267 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-----------~-----------------------------------~ 267 (436)
. .+...+++.+.++|+|.|+||+-.... . .
T Consensus 74 ~----~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~p 149 (228)
T PTZ00170 74 V----SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEP 149 (228)
T ss_pred C----CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhccc
Confidence 2 456667788889999999998653211 0 0
Q ss_pred CCCCcc----CHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 268 GKKFRA----DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 268 ~~~g~a----d~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.|.. .++.++++++.. ...|...|||+ .+.+..+.+. |+|.+++||++..++.
T Consensus 150 G~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~~a-Gad~iVvGsaI~~a~d 209 (228)
T PTZ00170 150 GFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAADA-GANVIVAGSSIFKAKD 209 (228)
T ss_pred CCCCcEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHHHc-CCCEEEEchHHhCCCC
Confidence 011110 123345555543 46788999997 5788888875 9999999999877665
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0017 Score=62.63 Aligned_cols=191 Identities=19% Similarity=0.198 Sum_probs=113.5
Q ss_pred cHHHHHHHH--HhCCCeEEeCcccchhhccC-hhhhhhhhh------ccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcE
Q 013813 115 ELPFRMLCR--RYGAEAAYTPMLHSRIFTES-EKYRNEEFA------TCKEDRPLFVQFCANDPEILLNAARRVEPYCDY 185 (436)
Q Consensus 115 d~~fR~l~~--~~Ga~l~~Temisa~~l~~~-~~~~~~~~~------~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~ 185 (436)
|.+.|...+ +.|+|.+.-|=.-+..|... .+.....+. ...-..|+.|++.-||+-.....| ...|+|+
T Consensus 34 d~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA--~a~gA~F 111 (263)
T COG0434 34 DRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALAIA--YAVGADF 111 (263)
T ss_pred HHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccHHHHHHH--HhcCCCE
Confidence 344444443 33677776665544444332 111111110 124568999999998875433222 1237899
Q ss_pred EEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHH-HHHcCccEEEeccCc
Q 013813 186 VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKM-LEDAGCSLLAVHGRT 262 (436)
Q Consensus 186 IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~-le~aG~d~I~VHgRt 262 (436)
|-+|.-|-....-. +.+..+-..+.+.-..+...+. ..|-||.-......+..+.++- ++..++|+++++|..
T Consensus 112 IRVN~~tg~~~tdq----Giieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~ 187 (263)
T COG0434 112 IRVNVLTGAYATDQ----GIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSR 187 (263)
T ss_pred EEEEeeeceEeccc----ceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEeccc
Confidence 99996553321111 1233333344444444442221 1334443332221233444444 778889999999875
Q ss_pred ccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 263 RDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 263 ~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
... ++|.+.++.+++.+++||+++-|++ ++.+.++|+. |||+++|+.+=
T Consensus 188 TG~------~~d~~el~~a~~~~~~pvlvGSGv~-~eN~~~~l~~--adG~IvgT~lK 236 (263)
T COG0434 188 TGS------PPDLEELKLAKEAVDTPVLVGSGVN-PENIEELLKI--ADGVIVGTSLK 236 (263)
T ss_pred CCC------CCCHHHHHHHHhccCCCEEEecCCC-HHHHHHHHHH--cCceEEEEEEc
Confidence 431 6889999999999999999999996 7899999986 99999997553
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0031 Score=65.63 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=98.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
.+.++.+-|.-.|+..+. +-...+.|+|.+-+|... ..+.+.+.++.+++. ++-+.+.+ +.
T Consensus 225 ~~~~I~~DLK~~Di~~~v-v~~~a~aGAD~vTVH~ea----------------~~~ti~~ai~~akk~-GikvgVD~-ln 285 (391)
T PRK13307 225 PDAFIVADLKTLDTGNLE-ARMAADATADAVVISGLA----------------PISTIEKAIHEAQKT-GIYSILDM-LN 285 (391)
T ss_pred CCCeEEEEecccChhhHH-HHHHHhcCCCEEEEeccC----------------CHHHHHHHHHHHHHc-CCEEEEEE-cC
Confidence 467899999999999886 223456799999999532 123466677776654 54444421 21
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
..+..+.++.+ ..++|.|.+|.....+.. ..-|+.++++++. .+++|...|||+ .+++.++++. |+|.+.
T Consensus 286 --p~tp~e~i~~l-~~~vD~Vllht~vdp~~~----~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~a-GADivV 356 (391)
T PRK13307 286 --VEDPVKLLESL-KVKPDVVELHRGIDEEGT----EHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKA-GADILV 356 (391)
T ss_pred --CCCHHHHHHHh-hCCCCEEEEccccCCCcc----cchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHc-CCCEEE
Confidence 13344555655 679999999942222211 3357788888874 478999999999 8899998875 999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+||++...++
T Consensus 357 VGsaIf~a~D 366 (391)
T PRK13307 357 VGRAITKSKD 366 (391)
T ss_pred EeHHHhCCCC
Confidence 9999876555
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0018 Score=63.18 Aligned_cols=193 Identities=17% Similarity=0.140 Sum_probs=123.6
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCcccc---hhhccChhhh-h------hhhhccCCCCCEEEEe--cCCCHHHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPMLHS---RIFTESEKYR-N------EEFATCKEDRPLFVQF--CANDPEILLNAAR 177 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Temisa---~~l~~~~~~~-~------~~~~~~~~e~plivQL--~g~d~e~~~~AA~ 177 (436)
|.++-|..--+++.+.|.+.+|+--... .++....... . ..+ ......|+++-+ +..+++.+.+.++
T Consensus 13 ~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I-~~~~~~Pv~~D~~~G~g~~~~~~~~v~ 91 (243)
T cd00377 13 LPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRI-ARAVDLPVIADADTGYGNALNVARTVR 91 (243)
T ss_pred ecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHH-HhhccCCEEEEcCCCCCCHHHHHHHHH
Confidence 5577788888899999999877542211 1111110000 0 001 112357888653 3346677888775
Q ss_pred H-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCc--cEEEEec-----cC-CChhhHHHHHHHH
Q 013813 178 R-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV--PVSCKIR-----VF-PNLQDTIKYAKML 248 (436)
Q Consensus 178 ~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i--PVsVKiR-----lg-~~~~d~~~~ak~l 248 (436)
. ++.|+++|.|.-+..-+ +.+..|..-+-.++...+.++++++..+- ++.|=-| .+ ...+++++-++..
T Consensus 92 ~~~~~G~~gv~iED~~~~k--~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay 169 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPK--KCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAY 169 (243)
T ss_pred HHHHcCCEEEEEecCCCCc--cccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHH
Confidence 5 46699999997654321 22334555555677777777777665532 5555555 33 4678999999999
Q ss_pred HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CC--CCHHHHHHHHHhcCcceeeeehHHh
Q 013813 249 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NV--RHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI--~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
.++|+|.|-+++.+ +.+.++++.+.+++||+++- +- .+.+++. + -|+..|.+|-.++
T Consensus 170 ~~AGAD~v~v~~~~-----------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~---~-lG~~~v~~~~~~~ 230 (243)
T cd00377 170 AEAGADGIFVEGLK-----------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELA---E-LGVRRVSYGLALL 230 (243)
T ss_pred HHcCCCEEEeCCCC-----------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH---H-CCCeEEEEChHHH
Confidence 99999999998654 45788999999999988763 22 3444443 3 4999999986543
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00033 Score=68.84 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=46.2
Q ss_pred ccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 272 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 272 ~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
..|++...++...+ ++.+|+-+||.+++|+..+... |+|+|.||+++|..|+.-..+
T Consensus 193 ~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~-G~davLVGe~lm~~~d~~~~~ 251 (254)
T PF00218_consen 193 EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARA-GADAVLVGEALMRSPDPGEAL 251 (254)
T ss_dssp CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTT-T-SEEEESHHHHTSSSHHHHH
T ss_pred ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHC-CCCEEEECHHHhCCCCHHHHH
Confidence 56777777777765 5889999999999999998875 999999999999999876544
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00022 Score=67.10 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=58.2
Q ss_pred HHHHHHcCccEEEeccCccccc-CCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+..+.+.|+|+|.++.-..... .+......++.++++++..+ +||++.||| +.+++.++++. |+|+|.+|++++.+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~-Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEA-GADGVAVVSAITGA 194 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHc-CCCEEEEeHHhhcC
Confidence 4455678999998874433221 11111224889999998877 999999999 68999999985 99999999998765
Q ss_pred Cc
Q 013813 323 PA 324 (436)
Q Consensus 323 P~ 324 (436)
+.
T Consensus 195 ~d 196 (212)
T PRK00043 195 ED 196 (212)
T ss_pred CC
Confidence 54
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00014 Score=70.03 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh-cCcceeeeeh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~-tGaDgVmIGR 317 (436)
.++.++|+.+.+.|++.|+|-.-.... +. +.+++.++++.+. +||...|||+|.+|+++++.. .+|+-|.+|+
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~~--~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--GL--GDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--CC--cchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 578899999999999999886554431 22 5678999999987 499999999999999998652 3699999999
Q ss_pred HHhhCCccchhhh
Q 013813 318 SLLENPALFAGFR 330 (436)
Q Consensus 318 gal~nP~lf~~i~ 330 (436)
.++.||.++.++.
T Consensus 110 ~a~~~p~~l~~~~ 122 (221)
T TIGR00734 110 ETLDITELLRECY 122 (221)
T ss_pred hhhCCHHHHHHhh
Confidence 9999999888764
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00092 Score=65.35 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=46.1
Q ss_pred ccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 272 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 272 ~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
..|.+...++...+ +..+|+-+||.|++|+.++.. . +|+|.||++++..++.-..+
T Consensus 186 ~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~~~d~~~~~ 243 (247)
T PRK13957 186 QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFMEKKDIRKAW 243 (247)
T ss_pred eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhCCCCHHHHH
Confidence 46777777777765 577899999999999999775 3 99999999999998865543
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00058 Score=69.55 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCc----cCHHHHHHHHhhC
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNAL 285 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~----ad~~~i~~ik~~~ 285 (436)
.+...+.++.+++.+++||+++++. .+.++..++++.++++|+|+|.+|.-.........+. .-++.++.+++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 4555666667777778999999865 4557778999999999999999964321111111111 1357788999988
Q ss_pred CCcEEEc--cCCCCHHHHHHHHHhcCcceeeee
Q 013813 286 RIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 286 ~iPVian--GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++||++. +++.+..++.+.++..|+|+|.+.
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999865 566677788888888899998764
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.003 Score=60.20 Aligned_cols=149 Identities=21% Similarity=0.222 Sum_probs=92.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchh--h--hcCccc------ccccCChHHHHHHHHHHh----
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRI--A--RRGNYG------AFLMDNLPLVKSLVEKLA---- 221 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~--~--~~~~~G------s~Ll~~p~~v~eIv~av~---- 221 (436)
..+++.=+-+.+++++.+.++.+ +.|+..||+-+--|... . -+..|+ +.-.-+.+.+...+++=.
T Consensus 9 ~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 9 KLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV 88 (206)
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence 35677778899999999999765 55899999976444311 0 011122 111223444433332210
Q ss_pred ------------cccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CC
Q 013813 222 ------------LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 287 (436)
Q Consensus 222 ------------~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~i 287 (436)
...++++... .....+ +..+.+.|+|+|.+..- ....+++++.+++.. ++
T Consensus 89 sp~~~~~v~~~~~~~~~~~~~G------~~t~~E-~~~A~~~Gad~vk~Fpa---------~~~G~~~l~~l~~~~~~~i 152 (206)
T PRK09140 89 TPNTDPEVIRRAVALGMVVMPG------VATPTE-AFAALRAGAQALKLFPA---------SQLGPAGIKALRAVLPPDV 152 (206)
T ss_pred CCCCCHHHHHHHHHCCCcEEcc------cCCHHH-HHHHHHcCCCEEEECCC---------CCCCHHHHHHHHhhcCCCC
Confidence 0112232222 111122 34455688888876321 123468899999877 59
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
|+++.||| +.+.+.++++. |+++|.++++++...
T Consensus 153 pvvaiGGI-~~~n~~~~~~a-Ga~~vav~s~l~~~~ 186 (206)
T PRK09140 153 PVFAVGGV-TPENLAPYLAA-GAAGFGLGSALYRPG 186 (206)
T ss_pred eEEEECCC-CHHHHHHHHHC-CCeEEEEehHhcccc
Confidence 99999999 68999999986 999999999997643
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=1.8e-05 Score=81.15 Aligned_cols=135 Identities=24% Similarity=0.350 Sum_probs=112.1
Q ss_pred EEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc
Q 013813 185 YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 264 (436)
Q Consensus 185 ~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~ 264 (436)
-.++|.|||......++.|..++..+..+..+.+..++..+.|+ +|+|+-.+..+...+++.+++.| .+.+|+|..-
T Consensus 289 l~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f 365 (477)
T KOG2334|consen 289 LRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIF 365 (477)
T ss_pred hhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhcccc
Confidence 47888999998888888888888899999999999999999999 99999888889999999999998 5678888744
Q ss_pred ccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 265 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 265 ~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
.+..+ ++.|+.++.+.....+++++||.+-...+- ..+++..||..++...+-.+|..
T Consensus 366 ~r~~~--pa~~~~~k~~l~~~~~~~~~~~~~ye~~~~----~d~lf~si~~~~~~~~~ssi~~~ 423 (477)
T KOG2334|consen 366 DRPTD--PAKWDTPKMVLADLCVKTKANGPVYETVQR----TDKLFSSIATARGQKYNSSIWSP 423 (477)
T ss_pred cccCC--CcCCCCHHHHHHHhhhhhcCCCcchhhhhh----hhhhhHHHhhhhhhhhhccccCc
Confidence 33333 788998888888889999999999766653 23478889999999988888764
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00047 Score=66.82 Aligned_cols=81 Identities=23% Similarity=0.353 Sum_probs=60.6
Q ss_pred hhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC-cEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 238 LQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 238 ~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i-PVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.++....+..+ +-.|...+.+-.... ...+.+.+.++++++.+++ ||++.|||++.+++++++.. |||+|.+
T Consensus 139 ~~~~~~~~~lA~~~~g~~~vYle~gs~-----~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~-GAD~VVV 212 (232)
T PRK04169 139 KPDIAAYAALAAEYLGMPIVYLEYGGG-----AGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAA-GADTIVV 212 (232)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEECCCC-----CCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHh-CCCEEEE
Confidence 34444433333 335655554432221 1125788999999999988 99999999999999998886 9999999
Q ss_pred ehHHhhCCc
Q 013813 316 AESLLENPA 324 (436)
Q Consensus 316 GRgal~nP~ 324 (436)
|..+..||.
T Consensus 213 GSai~~d~~ 221 (232)
T PRK04169 213 GNIIEEDPK 221 (232)
T ss_pred ChHHhhCHH
Confidence 999999988
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0028 Score=59.10 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=55.9
Q ss_pred HHHHHcCccEEEeccCccccc-CCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 246 KMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
..+.+.|+|++.+........ ........++.++++++.. ++||++.||| +.+++.++++ .|+|+|.+|++++...
T Consensus 110 ~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~-~G~~gva~~~~i~~~~ 187 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLA-AGADGVAVVSAIMQAA 187 (196)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEhHHhhCCC
Confidence 346678999998743322211 1111234688899988764 6999999999 5899999887 5999999999998654
Q ss_pred c
Q 013813 324 A 324 (436)
Q Consensus 324 ~ 324 (436)
+
T Consensus 188 d 188 (196)
T TIGR00693 188 D 188 (196)
T ss_pred C
Confidence 4
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0017 Score=60.73 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=91.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCc-----hhhhcCcc-----cccccCChHHHHHHH---------
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQ-----RIARRGNY-----GAFLMDNLPLVKSLV--------- 217 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~-----~~~~~~~~-----Gs~Ll~~p~~v~eIv--------- 217 (436)
.|++.=+-+.+++++.+.++.+ +.|++.|++.+--|. ...++. | |+...-+.+.+.+.+
T Consensus 4 ~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~-~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKE-FPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHH-CCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 4666668888888888888655 557899999764332 111111 1 333333344443333
Q ss_pred --------HHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCc
Q 013813 218 --------EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 218 --------~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iP 288 (436)
+..+. .+.++.+-+. +.+ + +..+.++|+|+|-+.... ..-.++++.+++.. ++|
T Consensus 83 p~~~~~~~~~~~~-~~~~~i~gv~---t~~---e-~~~A~~~Gad~i~~~p~~---------~~g~~~~~~l~~~~~~~p 145 (190)
T cd00452 83 PGLDPEVVKAANR-AGIPLLPGVA---TPT---E-IMQALELGADIVKLFPAE---------AVGPAYIKALKGPFPQVR 145 (190)
T ss_pred CCCCHHHHHHHHH-cCCcEECCcC---CHH---H-HHHHHHCCCCEEEEcCCc---------ccCHHHHHHHHhhCCCCe
Confidence 22222 2444444322 222 2 445568999999884311 12357788888765 699
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
+++.||| +.+.+.++++. |+++|.+|..+.
T Consensus 146 ~~a~GGI-~~~n~~~~~~~-G~~~v~v~s~i~ 175 (190)
T cd00452 146 FMPTGGV-SLDNAAEWLAA-GVVAVGGGSLLP 175 (190)
T ss_pred EEEeCCC-CHHHHHHHHHC-CCEEEEEchhcc
Confidence 9999999 89999999986 899999998887
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0026 Score=63.42 Aligned_cols=81 Identities=17% Similarity=0.347 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+..+..+..++.|+|+|.+.-.+.-+.+......+++.++++++.+++|+++-| ||. .+++.++++. |+++|-+++
T Consensus 154 ~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~~~~~i~~-G~~kinv~T 231 (281)
T PRK06806 154 STTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PEDFKKCIQH-GIRKINVAT 231 (281)
T ss_pred CHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHHHc-CCcEEEEhH
Confidence 334433444567999997732222222222235789999999999999999999 996 5889998885 999999999
Q ss_pred HHhhC
Q 013813 318 SLLEN 322 (436)
Q Consensus 318 gal~n 322 (436)
++..+
T Consensus 232 ~i~~a 236 (281)
T PRK06806 232 ATFNS 236 (281)
T ss_pred HHHHH
Confidence 99884
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0033 Score=60.42 Aligned_cols=134 Identities=17% Similarity=0.243 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~--g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~ 242 (436)
+.+.++....|++..+ +.|.|-|-. |++. .|+-|+-...+-.+.+.+. ++-|..- ..+|.
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~etl~Aae~Lv~e-GF~VlPY-----~~dD~- 141 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIETLKAAEQLVKE-GFVVLPY-----TTDDP- 141 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHHHHHHHHHHHhC-CCEEeec-----cCCCH-
Confidence 4578999999988755 467777763 3332 3666655444444443322 3333322 22343
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
-+|++|+++||..|-=-+-... ...|..+-..++.|.+..++|||.--||.++.|+...++. |||+|++.++.-
T Consensus 142 v~arrLee~GcaavMPl~aPIG---Sg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMEl-G~DaVL~NTAiA 215 (262)
T COG2022 142 VLARRLEEAGCAAVMPLGAPIG---SGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMEL-GADAVLLNTAIA 215 (262)
T ss_pred HHHHHHHhcCceEecccccccc---CCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhc-ccceeehhhHhh
Confidence 4799999999988743332222 2234556677888888889999999999999999999997 999999998763
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0039 Score=62.23 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+..+..+..++.|+|+|.+.-.+.-+.+......+++.++++++.+++|+++-| ||. .+++.++++. |+++|-|++
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~i~~~i~~-Gi~kiNv~T 231 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQIKKAIKL-GIAKINIDT 231 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHHHHc-CCCEEEECc
Confidence 334433334458999998632322222222345789999999999999999999 997 5788898886 999999998
Q ss_pred HHh
Q 013813 318 SLL 320 (436)
Q Consensus 318 gal 320 (436)
.+.
T Consensus 232 ~l~ 234 (282)
T TIGR01859 232 DCR 234 (282)
T ss_pred HHH
Confidence 764
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00073 Score=69.23 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=59.8
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.+.+.|+|+|.+.............+..++.++.+++..++||++-|||. .+++.+++.. |++||.++++++..+.
T Consensus 253 ~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~-Ga~gVAvisaI~~a~d 330 (347)
T PRK02615 253 MAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQA-GAKRVAVVRAIMGAED 330 (347)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHc-CCcEEEEeHHHhCCCC
Confidence 4556678999998865443322111225678999999998899999999996 8899988875 9999999999987544
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00076 Score=64.51 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=65.3
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+-+..+++.|+|+|.+-.-..........+.-|+.++.+++...+|+++-|||+ .+.+.++++ +|++||.+-|+++..
T Consensus 115 eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~v~~-~Ga~gVAvvsai~~a 192 (211)
T COG0352 115 EEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPEVLE-AGADGVAVVSAITSA 192 (211)
T ss_pred HHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHH-hCCCeEEehhHhhcC
Confidence 346667889999998855443332222235678999999998899999999996 799999888 499999999999987
Q ss_pred Cccchh
Q 013813 323 PALFAG 328 (436)
Q Consensus 323 P~lf~~ 328 (436)
++.-..
T Consensus 193 ~d~~~a 198 (211)
T COG0352 193 ADPAAA 198 (211)
T ss_pred CCHHHH
Confidence 776553
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.002 Score=62.07 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=58.5
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
..+.+.|+|+|.+..-....+ ....+..++.++.+++.+++||++-||| +.+++.++++. |++||.+-++++..++.
T Consensus 125 ~~A~~~gaDYv~~Gpv~t~tK-~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~-GA~giAvisai~~~~dp 201 (221)
T PRK06512 125 MEIGELRPDYLFFGKLGADNK-PEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAET-GAEFVALERAVFDAHDP 201 (221)
T ss_pred HHhhhcCCCEEEECCCCCCCC-CCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHh-CCCEEEEhHHhhCCCCH
Confidence 335679999998865431111 1122445778888888899999999999 68999999985 99999999999865553
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0066 Score=58.08 Aligned_cols=148 Identities=11% Similarity=0.220 Sum_probs=94.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~ 238 (436)
+..+|.+.|...+.+-++.++. |+|.|-+-.- .|.| ..+.-+--++++++++.+++|+.|=+= .
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvM-------DG~F----VPN~tfG~~~i~~l~~~t~~~~DvHLM----v 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIE-------DTSF----INNITFGMKTIQAVAQQTRHPLSFHLM----V 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEecc-------CCCc----CCccccCHHHHHHHHhcCCCCeEEEec----c
Confidence 5678999999999999877765 8887655531 1111 112222245566777766777666532 2
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccc-------------c------------------------------CCCCCc---
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K------------------------------DGKKFR--- 272 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~-------------~------------------------------~~~~g~--- 272 (436)
.+...+++.+.++|++.|++|.-.... + .++.|.
T Consensus 68 ~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~ 147 (210)
T PRK08005 68 SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFI 147 (210)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceec
Confidence 346668888889999999998542100 0 112221
Q ss_pred -cCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 273 -ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 273 -ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.-++-|+++++.. ...|-.-|||+ .+.+..+.+. |||.+++|+++..++.
T Consensus 148 ~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~a-Gad~~V~GsaiF~~~d 199 (210)
T PRK08005 148 AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAAA-GAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHHC-CCCEEEEChHhhCCCC
Confidence 1123444555443 34699999998 6888888875 9999999999876655
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0081 Score=57.99 Aligned_cols=144 Identities=15% Similarity=0.299 Sum_probs=96.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEec
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIR 233 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiR 233 (436)
+..+|.+.|.-.+.+-.+.++. |+|.+-+-. | +|+- .+| -++++++++. +++|+.|=+=
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~-----tfg----------~~~i~~lr~~~~~~~~dvHLM 70 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL-----TIG----------PMVCQALRKHGITAPIDVHLM 70 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc-----ccC----------HHHHHHHHhhCCCCCEEEEec
Confidence 6789999999999999988865 788765553 3 3331 122 3467777776 5788776632
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc-------------c------------------------------CCCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K------------------------------DGKK 270 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-------------~------------------------------~~~~ 270 (436)
. .+...+++.+.++|++.|++|.-.... + .++.
T Consensus 71 v----~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~ 146 (223)
T PRK08745 71 V----EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFG 146 (223)
T ss_pred c----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCC
Confidence 2 356677888889999999998532100 0 1122
Q ss_pred Cc----cCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 271 FR----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 271 g~----ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|. ..++-|+++++. .++.|-.-|||+ .+.+..+.+. |||.+++|+++...+.
T Consensus 147 GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~a-GaDi~V~GSaiF~~~d 207 (223)
T PRK08745 147 GQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAA-GADTFVAGSAIFNAPD 207 (223)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHc-CCCEEEEChhhhCCCC
Confidence 21 123445555543 246789999998 6888888876 9999999999876554
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0076 Score=58.07 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=46.5
Q ss_pred CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 271 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 271 g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.+..-+.++++++.. ++|+.|||+|+++++++.+. |||.|+.|.-+..+|.-+.++
T Consensus 178 ~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~a-gAD~IVtG~iiee~~~~~~~~ 233 (240)
T COG1646 178 DPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEA-GADTIVTGTIIEEDPDKALET 233 (240)
T ss_pred CCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHc-CCCEEEECceeecCHHHHHHH
Confidence 355667777777654 99999999999999999986 999999999999999655443
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.011 Score=56.72 Aligned_cols=126 Identities=24% Similarity=0.194 Sum_probs=76.5
Q ss_pred cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 180 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 180 ~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
+.|+|+|-+.-. .++ ...+.+.+.++..++ .++.+.+- .+ +.+ -++.+.+.|.+.|-+-
T Consensus 83 ~~G~~~vii~~s-----er~--------~~~~e~~~~v~~a~~-~Gl~~I~~--v~-~~~----~~~~~~~~~~~~I~~~ 141 (223)
T PRK04302 83 DAGAVGTLINHS-----ERR--------LTLADIEAVVERAKK-LGLESVVC--VN-NPE----TSAAAAALGPDYVAVE 141 (223)
T ss_pred HcCCCEEEEecc-----ccc--------cCHHHHHHHHHHHHH-CCCeEEEE--cC-CHH----HHHHHhcCCCCEEEEe
Confidence 358999877632 001 112346667766655 36554443 22 122 2344667788888775
Q ss_pred cCcccccC-C-C-CCcc-CHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 260 GRTRDEKD-G-K-KFRA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 260 gRt~~~~~-~-~-~g~a-d~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
++..-+.. + . ..+. .-+.++.+++.. ++||++.|||++.+++..+++. |+|||.||++++.-+++-.
T Consensus 142 p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~-gadGvlVGsa~l~~~~~~~ 213 (223)
T PRK04302 142 PPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALEL-GADGVLLASGVVKAKDPEA 213 (223)
T ss_pred CccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcC-CCCEEEEehHHhCCcCHHH
Confidence 54211110 0 0 0011 123345566543 7999999999999999998875 9999999999997766543
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0091 Score=64.17 Aligned_cols=69 Identities=23% Similarity=0.409 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+.++.+.++|++.|.|..-... ....|+.|+++++.. +++|++ |+|.|.++++.+++. |||+|.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~a-Gad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDA-GADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHc-CCCEEEEC
Confidence 4477889999999999988542111 022378999999874 677777 999999999999986 99999865
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0014 Score=77.06 Aligned_cols=112 Identities=18% Similarity=0.187 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC------CCCCccCHHH-HHH
Q 013813 209 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNA-IKA 280 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~------~~~g~ad~~~-i~~ 280 (436)
.++-+.++|..++... +.||+||+-.+....+ ++.-+.++|+|.|+|.|.....-. ... ..-|++ +.+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~---ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~-GlP~e~gL~~ 1054 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGT---IATGVAKAYADLITISGYDGGTGASPLTSVKYA-GSPWELGLAE 1054 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCccH---HHhChhhcCCCEEEEeCCCCCcccccHHHHhhC-CccHHHHHHH
Confidence 4677888899998877 6899999765443332 344566799999999876542110 011 123443 333
Q ss_pred HHhh-----C--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 281 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 281 ik~~-----~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+.+. + .+.+++.||+.|..|+..++.. |||.|.+||++|----+
T Consensus 1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aL-GAd~~~~gt~~lialGC 1105 (1485)
T PRK11750 1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAAIL-GAESFGFGTGPMVALGC 1105 (1485)
T ss_pred HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHc-CCcccccchHHHHHcCC
Confidence 3332 2 5899999999999999999986 99999999998765443
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0058 Score=67.91 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------------C
Q 013813 168 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------F 235 (436)
Q Consensus 168 d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------------g 235 (436)
||.++++ ...+.|+++|-+.. ....||+++ +-++.+++.+++||-.|==+ |
T Consensus 71 d~~~~a~--~y~~~GA~aiSVlT-------e~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~G 133 (695)
T PRK13802 71 DPAALAR--EYEQGGASAISVLT-------EGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHG 133 (695)
T ss_pred CHHHHHH--HHHHcCCcEEEEec-------CcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcC
Confidence 4444333 23455899998873 233455554 23445566678899888311 1
Q ss_pred ----------CChhhHHHHHHHHHHcCccEE-EeccCcc--------------cccCCCCCccCHHHHHHHHhhC--CCc
Q 013813 236 ----------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RIP 288 (436)
Q Consensus 236 ----------~~~~d~~~~ak~le~aG~d~I-~VHgRt~--------------~~~~~~~g~ad~~~i~~ik~~~--~iP 288 (436)
.+.++..++.+.+.+.|.+.| -||.+.- ..+.-.+...|.+...++...+ ++.
T Consensus 134 ADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~ 213 (695)
T PRK13802 134 ADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVI 213 (695)
T ss_pred CCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcE
Confidence 122345556666666666655 4553221 0011122256777778887765 577
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+|+-+||.+++|+..+.+. |+|+|.||.++|..|+.-..+
T Consensus 214 ~VsESGI~~~~d~~~l~~~-G~davLIGeslm~~~dp~~~~ 253 (695)
T PRK13802 214 KVAESGVFGAVEVEDYARA-GADAVLVGEGVATADDHELAV 253 (695)
T ss_pred EEEcCCCCCHHHHHHHHHC-CCCEEEECHHhhCCCCHHHHH
Confidence 8999999999999998875 999999999999999854433
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0082 Score=61.88 Aligned_cols=124 Identities=12% Similarity=0.112 Sum_probs=95.6
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.+.++ .++.||+.|-|-.| +. ..++.-.+.++++++.+ ++++.|-..-+++.+++.++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~-----------~~---~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPW-----------GP---GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-----------Cc---hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence 7888887775 45679999998531 10 11455677888888877 47788887778999999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmI 315 (436)
++.+++.++.++- +... ..|++..+++++.+++||.+...+.+ +++++++++...+|.|.+
T Consensus 209 ~~~l~~~~l~~iE-------eP~~---~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 209 GRALEELGFFWYE-------DPLR---EASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred HHHhhhcCCCeEe-------CCCC---chhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 9999999887762 1111 34678888999999999988888999 999999999877888876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.006 Score=58.48 Aligned_cols=147 Identities=15% Similarity=0.311 Sum_probs=102.1
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 158 RPLFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
..+..+|...|...+.+-.+.+++ |+|.|-+.. | +|+ .-+=-.+++++++.+..|+.|=+
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPN---------------iTfGp~~v~~l~~~t~~p~DvHL 68 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPN---------------ITFGPPVVKALRKITDLPLDVHL 68 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC---------------cccCHHHHHHHhhcCCCceEEEE
Confidence 457899999999999999988864 898877764 2 444 22224567788887788888874
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcc-------------cc------------------------------cCCC
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------------DE------------------------------KDGK 269 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~-------------~~------------------------------~~~~ 269 (436)
=+ ++...+++.+.++|++.|++|.=.. .- ..++
T Consensus 69 MV----~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGf 144 (220)
T COG0036 69 MV----ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGF 144 (220)
T ss_pred ec----CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCC
Confidence 32 4556788888999999999975210 00 0122
Q ss_pred CCc----cCHHHHHHHHhhC----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 270 KFR----ADWNAIKAVKNAL----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 270 ~g~----ad~~~i~~ik~~~----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.|. .-++-++++++.. ++-|-.-|||+ .+.+..+.+. |||.+++|+++..+++.
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~A-Gad~~VaGSalF~~~d~ 206 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAA-GADVFVAGSALFGADDY 206 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHc-CCCEEEEEEEEeCCccH
Confidence 221 1234455555543 34578999997 5888888776 99999999998888883
|
|
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0052 Score=63.02 Aligned_cols=135 Identities=16% Similarity=0.225 Sum_probs=100.4
Q ss_pred CCCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiR 233 (436)
..|+-..+...+++++.+.+ +.++.||..+-|-.|- .+++.-.+.++++++.++ +.+.+...
T Consensus 130 ~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN 194 (355)
T cd03321 130 PVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYN 194 (355)
T ss_pred CeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCC
Confidence 34555555556677766555 5567788877765431 234555677888888773 66777766
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.++++++++.+++.++.+|- ++. .+-||+..+++++.+++||.+...+.+++++.++++...+|.|
T Consensus 195 ~~~~~~~A~~~~~~l~~~~i~~iE------eP~----~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i 264 (355)
T cd03321 195 QSLTVPEAIERGQALDQEGLTWIE------EPT----LQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLV 264 (355)
T ss_pred CCcCHHHHHHHHHHHHcCCCCEEE------CCC----CCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeE
Confidence 678899999999999999988873 111 1347888999999999999998899999999999998778887
Q ss_pred eee
Q 013813 314 LSA 316 (436)
Q Consensus 314 mIG 316 (436)
.+-
T Consensus 265 ~~~ 267 (355)
T cd03321 265 MPD 267 (355)
T ss_pred ecC
Confidence 653
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0099 Score=60.57 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=84.2
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEecc------------C----------
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV------------F---------- 235 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRl------------g---------- 235 (436)
.+.|+++|-+.. ....|||++ +-++.+++. +++||-+|==+ |
T Consensus 149 e~~GA~aISVLT-------d~~~F~Gs~--------e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaai 213 (338)
T PLN02460 149 EKGGAACLSVLT-------DEKYFQGSF--------ENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAV 213 (338)
T ss_pred HhCCCcEEEEec-------CcCcCCCCH--------HHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHh
Confidence 345788887762 223345443 224556665 77888888311 1
Q ss_pred CChhhHHHHHHHHHHcCccEE-EeccCcc-----c----------ccCCCCCccCHHHHHHHHh-----hC---CCcEEE
Q 013813 236 PNLQDTIKYAKMLEDAGCSLL-AVHGRTR-----D----------EKDGKKFRADWNAIKAVKN-----AL---RIPVLA 291 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I-~VHgRt~-----~----------~~~~~~g~ad~~~i~~ik~-----~~---~iPVia 291 (436)
.+.++..++.+.+.+.|.+.+ -||...- . .+.-.+...|++...++.. .+ ++.+++
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~Vs 293 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVG 293 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEE
Confidence 122344556666666666554 4553210 0 0011122467777777766 22 456899
Q ss_pred ccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 292 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 292 nGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.+||.|++|+..+.+. |+|+|.||.+++..|+.-..++
T Consensus 294 ESGI~t~~Dv~~l~~~-GadAvLVGEsLMr~~dp~~~l~ 331 (338)
T PLN02460 294 ESGLFTPDDVAYVQNA-GVKAVLVGESLVKQDDPGKGIA 331 (338)
T ss_pred CCCCCCHHHHHHHHHC-CCCEEEECHHHhCCCCHHHHHH
Confidence 9999999999998875 9999999999999998655443
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.026 Score=55.11 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=104.2
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCccc-c--hhhccChhhh-------hhhhhccCCCCCEEEEe---cCCCHHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPMLH-S--RIFTESEKYR-------NEEFATCKEDRPLFVQF---CANDPEILLNAA 176 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Temis-a--~~l~~~~~~~-------~~~~~~~~~e~plivQL---~g~d~e~~~~AA 176 (436)
|.++-|...-+++.+.|.+.+++---. + .++....... ...+...-...|+++=+ +|.+++...+.+
T Consensus 16 ~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~ 95 (240)
T cd06556 16 TLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELA 95 (240)
T ss_pred EecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHH
Confidence 778889999999999999987754321 1 1111111000 00111112235888765 345667777777
Q ss_pred H-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-----------------Ch
Q 013813 177 R-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-----------------NL 238 (436)
Q Consensus 177 ~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-----------------~~ 238 (436)
+ +++.|+++|.|--+. ...+.++++++. +++|...+-..+ ..
T Consensus 96 ~~l~~aGa~gv~iED~~-------------------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~ 155 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE-------------------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAG 155 (240)
T ss_pred HHHHHcCCcEEEEcCcH-------------------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHH
Confidence 5 556799999987431 233456666544 477776655411 23
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+++++-++.++++|+|.|.+++. +.+.++++.+.+++|+++||.=. +|||-++-
T Consensus 156 ~~ai~Ra~ay~~AGAd~i~~e~~------------~~e~~~~i~~~~~~P~~~~gag~------------~~dgq~lv 209 (240)
T cd06556 156 EQLIADALAYAPAGADLIVMECV------------PVELAKQITEALAIPLAGIGAGS------------GTDGQFLV 209 (240)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHhCCCCEEEEecCc------------CCCceEEe
Confidence 46677788899999999998743 35778999999999999887432 78876554
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.017 Score=57.80 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=58.8
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC--CCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN--VRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG--I~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
+..+.+++.|+|+|.+.-.+..+++......+++.++++++.+++|++.-|| |. .+++.++++. |++.|-|++++.
T Consensus 160 ~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i~~-Gi~KINv~T~~~ 237 (286)
T PRK06801 160 LARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAIEL-GIHKINFYTGMS 237 (286)
T ss_pred HHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHHHc-CCcEEEehhHHH
Confidence 3334445799999988545544444333357999999999999999999999 87 5788888885 999999998764
Q ss_pred h
Q 013813 321 E 321 (436)
Q Consensus 321 ~ 321 (436)
.
T Consensus 238 ~ 238 (286)
T PRK06801 238 Q 238 (286)
T ss_pred H
Confidence 3
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0015 Score=60.49 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=53.5
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.+.|+|++.+..-..........+..|+.+.++++...+||++-||| +++++.++.+ .|++||.+-+++
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~-~Ga~gvAvi~aI 180 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELRE-AGADGVAVISAI 180 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHH-TT-SEEEESHHH
T ss_pred HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEeeC
Confidence 666778999999987653332211123567899999999999999999999 5888998887 499999988764
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.016 Score=58.56 Aligned_cols=137 Identities=22% Similarity=0.218 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHcC--CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHH
Q 013813 167 NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~--g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ 244 (436)
.+.++....|++..+ +.+.|-|-.-- + --.++.|+....+-.+.+.+. ++-|.+=+ . ++ ...
T Consensus 147 ~ta~eAv~~a~lare~~~~~~iKlEvi~-------e--~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc--~---~d-~~~ 210 (326)
T PRK11840 147 YTAEEAVRTLRLAREAGGWDLVKLEVLG-------D--AKTLYPDMVETLKATEILVKE-GFQVMVYC--S---DD-PIA 210 (326)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEcC-------C--CCCcccCHHHHHHHHHHHHHC-CCEEEEEe--C---CC-HHH
Confidence 568888888887754 45777766311 1 123455555444444443211 33332221 1 12 346
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++.+++.|+-.|---+-... .+.|-.+-+.++.+.+..++||+..+||.+++|+..+++. |||||.+.+|...-+
T Consensus 211 a~~l~~~g~~avmPl~~pIG---sg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Amel-GadgVL~nSaIa~a~ 285 (326)
T PRK11840 211 AKRLEDAGAVAVMPLGAPIG---SGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMEL-GCDGVLMNTAIAEAK 285 (326)
T ss_pred HHHHHhcCCEEEeecccccc---CCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEcceeccCC
Confidence 88899999943322111111 1222347788999999999999999999999999999997 999999999886433
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0056 Score=60.00 Aligned_cols=112 Identities=14% Similarity=0.255 Sum_probs=77.1
Q ss_pred HHHHhcccCccEEEEecc------------C----------CChhhHHHHHHHHHHcCccEE-EeccCcc----------
Q 013813 217 VEKLALNLNVPVSCKIRV------------F----------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR---------- 263 (436)
Q Consensus 217 v~av~~~~~iPVsVKiRl------------g----------~~~~d~~~~ak~le~aG~d~I-~VHgRt~---------- 263 (436)
++.++..+.+||-+|==+ | .+.++..+++..+.+.|.+.+ -||...-
T Consensus 99 L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~ 178 (254)
T COG0134 99 LRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAK 178 (254)
T ss_pred HHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCC
Confidence 456677788999998311 2 122345566666677777665 3554221
Q ss_pred ----cccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 264 ----DEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 264 ----~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
..+.-.+...|++...++.... +..+|.-+||.+++|+.++... |+|++.||.++|.++.....+
T Consensus 179 iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~-ga~a~LVG~slM~~~~~~~a~ 249 (254)
T COG0134 179 IIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKA-GADAFLVGEALMRADDPEEAL 249 (254)
T ss_pred EEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHc-CCCEEEecHHHhcCCCHHHHH
Confidence 0001112246788888888765 4789999999999999998885 999999999999999985443
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0042 Score=59.04 Aligned_cols=142 Identities=15% Similarity=0.355 Sum_probs=87.7
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEe--cC--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDIN--LG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN--~G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+..+|+..|...+.+.++.+++ |+|.+-+- -| +|+- .+ --++++++++.+++|+.|=+=.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~-----~~----------g~~~i~~i~~~~~~~~DvHLMv 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL-----TF----------GPDIIKAIRKITDLPLDVHLMV 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB------B-----------HHHHHHHHTTSSSEEEEEEES
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc-----cC----------CHHHHHHHhhcCCCcEEEEeee
Confidence 5678889999999999988764 78865443 33 3431 12 2455667777788888877522
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccc-------------------------------------------cCCCCC
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKF 271 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-------------------------------------------~~~~~g 271 (436)
.++..+++.+.++|++.|++|.-.... ..++.|
T Consensus 67 ----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 67 ----ENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp ----SSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSS
T ss_pred ----ccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCc
Confidence 233456667777888888886432100 012222
Q ss_pred cc----CHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 272 RA----DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 272 ~a----d~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
.. -++-|+++++. .++.|..-|||+. +.+..+.+. |||.+++|+++..+
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~a-Gad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEA-GADIFVAGSAIFKA 200 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHH-T--EEEESHHHHTS
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHc-CCCEEEECHHHhCC
Confidence 21 24445555443 3588999999985 688888876 99999999988653
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.019 Score=55.00 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=95.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCch-----hhhcC-------cccccccCChHHHHHHHHHHhc-
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR-----IARRG-------NYGAFLMDNLPLVKSLVEKLAL- 222 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~-----~~~~~-------~~Gs~Ll~~p~~v~eIv~av~~- 222 (436)
..+++.=|-+.++++....++.+ +.|+..||+-+-.|.. ..++. .-|+.-.-+++.+++.+++=.+
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 46777778999999999999765 5589999998866551 11111 1244444566666554443111
Q ss_pred ---------------ccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-C
Q 013813 223 ---------------NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-R 286 (436)
Q Consensus 223 ---------------~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~ 286 (436)
..++|+.-.+ ....+ +..+.++|+|+|-+.... ..-.++++.++... +
T Consensus 92 ivsP~~~~~v~~~~~~~~i~~iPG~------~T~~E-~~~A~~~Gad~vklFPa~---------~~G~~~ik~l~~~~p~ 155 (213)
T PRK06552 92 IVSPSFNRETAKICNLYQIPYLPGC------MTVTE-IVTALEAGSEIVKLFPGS---------TLGPSFIKAIKGPLPQ 155 (213)
T ss_pred EECCCCCHHHHHHHHHcCCCEECCc------CCHHH-HHHHHHcCCCEEEECCcc---------cCCHHHHHHHhhhCCC
Confidence 1133332221 11222 233467999999885421 12247788888776 4
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
+|+++.|||+ .+.+.++++. |+++|.+|..++
T Consensus 156 ip~~atGGI~-~~N~~~~l~a-Ga~~vavgs~l~ 187 (213)
T PRK06552 156 VNVMVTGGVN-LDNVKDWFAA-GADAVGIGGELN 187 (213)
T ss_pred CEEEEECCCC-HHHHHHHHHC-CCcEEEEchHHh
Confidence 9999999998 7999999986 999999998885
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.03 Score=60.37 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+..+-++.|.++|+|.|.+-.-. +. ...-|+.|++|++...-..+..|+|.|.++++.+++. |||+|.+|
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~-----g~-~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a-GaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ-----GD-SIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA-GVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC-----CC-cHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc-CcCEEEEC
Confidence 345677888999999999885421 11 1234799999998753334556899999999999986 99999775
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.081 Score=53.36 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcccCccEEEEe-ccCC------ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh
Q 013813 212 LVKSLVEKLALNLNVPVSCKI-RVFP------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 284 (436)
Q Consensus 212 ~v~eIv~av~~~~~iPVsVKi-Rlg~------~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~ 284 (436)
.+.+++++. ...++|+.+=+ -.|. +.+.+...++...+.|+|.|-+---+... .-+-+.++++.+.
T Consensus 155 ~l~~v~~ea-~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~------~g~~e~f~~vv~~ 227 (304)
T PRK06852 155 EAAQIIYEA-HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEG------ANPAELFKEAVLA 227 (304)
T ss_pred HHHHHHHHH-HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCC------CCCHHHHHHHHHh
Confidence 344555554 34589987622 1132 22334556788899999999664322110 1234677888888
Q ss_pred C-CCcEEEccCCC-CHHHHHH----HHHhcCcceeeeehHHhhCCc
Q 013813 285 L-RIPVLANGNVR-HMEDVQK----CLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 285 ~-~iPVianGGI~-s~eda~~----~l~~tGaDgVmIGRgal~nP~ 324 (436)
. .+||+..||=+ +.+++.+ .++..|+.||.+||=....|.
T Consensus 228 ~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 228 AGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 8 89999888866 4444444 444359999999998776654
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.015 Score=59.13 Aligned_cols=105 Identities=19% Similarity=0.259 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCc----cCHHHHHHHHhhCC
Q 013813 211 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNALR 286 (436)
Q Consensus 211 ~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~----ad~~~i~~ik~~~~ 286 (436)
+...+-+...++..+.||.+-+ .+.+.++..++++.++++|+|+|.+|--......+..+. .-.+.++.+++.++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si-~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASL-NGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT 163 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEe-CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence 3333444444445578999887 355667888999999999999999875431111111111 11467788888888
Q ss_pred CcEE--EccCCCCHHHHHHHHHhcCcceeeee
Q 013813 287 IPVL--ANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 287 iPVi--anGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+||+ ..+++.+..++.+.+++.|+|+|.+.
T Consensus 164 iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 9987 45666677777777777899998764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.029 Score=54.45 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=92.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 239 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~ 239 (436)
+..+|...|.-.+.+-.+.++.|+|.|-+-.- .| .+..+.-+--++++++++.+++|+.|=+=. .
T Consensus 5 I~pSil~ad~~~l~~el~~l~~g~d~lH~DiM-------DG----~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv----~ 69 (229)
T PRK09722 5 ISPSLMCMDLLKFKEQIEFLNSKADYFHIDIM-------DG----HFVPNLTLSPFFVSQVKKLASKPLDVHLMV----T 69 (229)
T ss_pred EEeehhhcCHHHHHHHHHHHHhCCCEEEEecc-------cC----ccCCCcccCHHHHHHHHhcCCCCeEEEEEe----c
Confidence 67899999999999999888778887655531 01 111122222456677777677776665322 3
Q ss_pred hHHHHHHHHHHcCccEEEeccCcc--cc------------c------------------------------CCCCCcc--
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTR--DE------------K------------------------------DGKKFRA-- 273 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~--~~------------~------------------------------~~~~g~a-- 273 (436)
++..+++.+.++|++.|++|.-.. .. + .++.|..
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi 149 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFI 149 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhcc
Confidence 566778888889999999986421 00 0 1121211
Q ss_pred --CHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH-Hhh
Q 013813 274 --DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES-LLE 321 (436)
Q Consensus 274 --d~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg-al~ 321 (436)
-++-|+++++. .++.|-.-|||+ .+.+.++.+. |||.+++|++ +..
T Consensus 150 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~a-Gad~~V~Gss~iF~ 203 (229)
T PRK09722 150 PEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEA-GADVFIVGTSGLFN 203 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHc-CCCEEEEChHHHcC
Confidence 12334444442 246689999998 6788888876 9999999976 443
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.02 Score=56.51 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++.+ +.|+++|-+|. ..|-+..-..+.-.++++.+++.+ ++||.+.+.. .+..+++++
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~G----------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~ 84 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLG----------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIEL 84 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHHH
Confidence 667777777654 56999998883 345555556666677777766655 5899988543 355789999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE------EccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL------ANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi------anGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.++++|+|++.+..-.... .+...-+++++.|.+.+++||+ ..|---+++.+.++.+...+.|+=.
T Consensus 85 a~~a~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~ 158 (281)
T cd00408 85 ARHAEEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKD 158 (281)
T ss_pred HHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEe
Confidence 999999999999986543221 1111235667788888889987 3466777888888775334444433
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.041 Score=51.57 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=90.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchh-----h------hcCcccccccCChHHHHHHHHHHhcc-
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRI-----A------RRGNYGAFLMDNLPLVKSLVEKLALN- 223 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~-----~------~~~~~Gs~Ll~~p~~v~eIv~av~~~- 223 (436)
..+++.=+.+.++++..+.++.+ +.|++.|+|-+--+... . ...+.|. ++.. +.+...++.=.+.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gt-vl~~-d~~~~A~~~gAdgv 88 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGT-ILTL-EDLEEAIAAGAQFC 88 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEE-EEcH-HHHHHHHHcCCCEE
Confidence 35677778899999999988654 56899999975322210 0 0111222 2222 4444443321111
Q ss_pred ---------------cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CC
Q 013813 224 ---------------LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 287 (436)
Q Consensus 224 ---------------~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~i 287 (436)
.+++.. +| ..+..+ +..+.+.|+|+|-+..- . . ..-.++++.++..+ ++
T Consensus 89 ~~p~~~~~~~~~~~~~~~~~i----~G--~~t~~e-~~~A~~~Gadyv~~Fpt--~---~---~~G~~~l~~~~~~~~~i 153 (187)
T PRK07455 89 FTPHVDPELIEAAVAQDIPII----PG--ALTPTE-IVTAWQAGASCVKVFPV--Q---A---VGGADYIKSLQGPLGHI 153 (187)
T ss_pred ECCCCCHHHHHHHHHcCCCEE----cC--cCCHHH-HHHHHHCCCCEEEECcC--C---c---ccCHHHHHHHHhhCCCC
Confidence 112111 22 122223 34456789999987431 1 0 12357799999887 69
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
||++.||| +.+++.++++. |+++|.++++++.
T Consensus 154 pvvaiGGI-~~~n~~~~l~a-Ga~~vav~s~i~~ 185 (187)
T PRK07455 154 PLIPTGGV-TLENAQAFIQA-GAIAVGLSGQLFP 185 (187)
T ss_pred cEEEeCCC-CHHHHHHHHHC-CCeEEEEehhccc
Confidence 99999999 57999999995 9999999988754
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0055 Score=61.45 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=55.4
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.+.|+|+|.+..-..........+..++.++++++..++||++-||| +.+++.++++. |++||.+-+++
T Consensus 239 ~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~-g~~gva~i~~~ 311 (312)
T PRK08999 239 LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREH-GAQGIAGIRGL 311 (312)
T ss_pred HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHh-CCCEEEEEEEe
Confidence 455667899999886543322111122456888999999899999999999 79999998875 99999987764
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.024 Score=60.23 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=47.2
Q ss_pred ccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 272 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 272 ~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
..|.+...++...+ ++.+|+-+||.|++|+..+ .. |+|+|.||.++|.+|+.-..++
T Consensus 194 ~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~-~~davLiG~~lm~~~d~~~~~~ 252 (454)
T PRK09427 194 SIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SP-FANGFLIGSSLMAEDDLELAVR 252 (454)
T ss_pred eECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-Hh-cCCEEEECHHHcCCCCHHHHHH
Confidence 46777777777765 6778999999999999996 44 7999999999999999765554
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.02 Score=56.11 Aligned_cols=187 Identities=17% Similarity=0.240 Sum_probs=107.1
Q ss_pred CCcEEEccCCCCCcHHHHHHH---HHhCCCeEEeCcccch----hhcc-Chhhhhhhhh-ccCCCCCEEEEecCCCHHHH
Q 013813 102 RPKLIVAPMVDNSELPFRMLC---RRYGAEAAYTPMLHSR----IFTE-SEKYRNEEFA-TCKEDRPLFVQFCANDPEIL 172 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~---~~~Ga~l~~Temisa~----~l~~-~~~~~~~~~~-~~~~e~plivQL~g~d~e~~ 172 (436)
...++.-|=+==|.-.....+ ++.|+.+++-.....| .|.. ..+......+ ....+-|++..++. ++++
T Consensus 15 ~~~~iaGPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d--~~~v 92 (250)
T PRK13397 15 KNNFIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS--ERQL 92 (250)
T ss_pred CCcEEeccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC--HHHH
Confidence 344555555555554444443 4557665554433222 2211 1111111111 12345667666543 3333
Q ss_pred HHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC
Q 013813 173 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 252 (436)
Q Consensus 173 ~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG 252 (436)
..+ .+++|.+-| ||..+++.+++.++- .+++||.+|.-...+.++....++.+.+.|
T Consensus 93 ~~~----~e~vdilqI--------------gs~~~~n~~LL~~va-----~tgkPVilk~G~~~t~~e~~~A~e~i~~~G 149 (250)
T PRK13397 93 EEA----YDYLDVIQV--------------GARNMQNFEFLKTLS-----HIDKPILFKRGLMATIEEYLGALSYLQDTG 149 (250)
T ss_pred HHH----HhcCCEEEE--------------CcccccCHHHHHHHH-----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 222 224666554 677888877665543 348999999655677888888899999999
Q ss_pred ccEEEe-c-cCcccccCCC-CCccCHHHHHHHHhhCCCcEEEc----cCCCC--HHHHHHHHHhcCcceeeee
Q 013813 253 CSLLAV-H-GRTRDEKDGK-KFRADWNAIKAVKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 253 ~d~I~V-H-gRt~~~~~~~-~g~ad~~~i~~ik~~~~iPVian----GGI~s--~eda~~~l~~tGaDgVmIG 316 (436)
...|++ | |- ...... ....|+..+..+++..++||+.. +|.+. ..-+...+. .||||+||=
T Consensus 150 n~~i~L~eRg~--~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA-~GAdGl~IE 219 (250)
T PRK13397 150 KSNIILCERGV--RGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKA-VGANGIMME 219 (250)
T ss_pred CCeEEEEcccc--CCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHH-hCCCEEEEE
Confidence 965554 5 32 211111 11468888999998889999885 55433 233445555 499999976
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.021 Score=56.42 Aligned_cols=110 Identities=17% Similarity=0.280 Sum_probs=75.3
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-ccCcccccCCCCCccCHHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKA 280 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-HgRt~~~~~~~~g~ad~~~i~~ 280 (436)
-||..+.+.+++..+ . .+++||.+|.-...+.++....++.+.+.|...|++ |..+..-........||..+..
T Consensus 114 I~s~~~~n~~LL~~~----a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~ 188 (260)
T TIGR01361 114 IGARNMQNFELLKEV----G-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPV 188 (260)
T ss_pred ECcccccCHHHHHHH----h-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHH
Confidence 367788888865554 2 458999999655557888888899999999966655 6323221011122579999999
Q ss_pred HHhhCCCcEEE----ccCCCC--HHHHHHHHHhcCcceeeeeh
Q 013813 281 VKNALRIPVLA----NGNVRH--MEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 281 ik~~~~iPVia----nGGI~s--~eda~~~l~~tGaDgVmIGR 317 (436)
+++..++||++ .+|.++ ...+...+. .||||+||=+
T Consensus 189 lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva-~Ga~gl~iE~ 230 (260)
T TIGR01361 189 LKKETHLPIIVDPSHAAGRRDLVIPLAKAAIA-AGADGLMIEV 230 (260)
T ss_pred HHHhhCCCEEEcCCCCCCccchHHHHHHHHHH-cCCCEEEEEe
Confidence 99888999999 334222 344445555 4999998764
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.053 Score=54.49 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=56.7
Q ss_pred HHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccC--CCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN--VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGG--I~s~eda~~~l~~tGaDgVmIG 316 (436)
|+.+.+.|+|+|.+ ||..... +...+++.++++++.+ ++|+++-|| |. .+++.++++. |++.|-|+
T Consensus 159 a~~f~~tgvD~LAv~iG~vHG~y~t~----~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~~i~~-Gi~KiNv~ 232 (293)
T PRK07315 159 AKAMVETGIDFLAAGIGNIHGPYPEN----WEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQEAIKL-GVAKVNVN 232 (293)
T ss_pred HHHHHHcCCCEEeeccccccccCCCC----CCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHHHHHc-CCCEEEEc
Confidence 45555889999966 5554321 1258899999999999 599999999 86 5889999985 99999999
Q ss_pred hHHhh
Q 013813 317 ESLLE 321 (436)
Q Consensus 317 Rgal~ 321 (436)
+.+..
T Consensus 233 T~i~~ 237 (293)
T PRK07315 233 TECQI 237 (293)
T ss_pred cHHHH
Confidence 99876
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.011 Score=56.40 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=59.8
Q ss_pred HHHHHHcCccEEEeccCccccc-CCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+..+++.|+|++.+..-..... .+...+..|+.++++.+. .++||++-|||. .+++.++++. |++||.+-++++..
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~-Ga~GiAvisai~~~ 192 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLAT-GVGSIAVVSAITQA 192 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHHc-CCCEEEEhhHhhCC
Confidence 4556688999998865433221 112224568888888776 589999999998 7899998875 99999999999876
Q ss_pred Cccch
Q 013813 323 PALFA 327 (436)
Q Consensus 323 P~lf~ 327 (436)
++.-.
T Consensus 193 ~d~~~ 197 (211)
T PRK03512 193 ADWRA 197 (211)
T ss_pred CCHHH
Confidence 65433
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.19 Score=51.20 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=99.2
Q ss_pred HHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc-ccc--hhhccChhhh-h------hhhhccCCCCCEEE-Ee-
Q 013813 97 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM-LHS--RIFTESEKYR-N------EEFATCKEDRPLFV-QF- 164 (436)
Q Consensus 97 ~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem-isa--~~l~~~~~~~-~------~~~~~~~~e~pliv-QL- 164 (436)
++.-|+ ||+ |...-|.++-+++.+.|++++.+.= +.. -++.....-. . ..+. .-...|++| -+
T Consensus 30 ~k~~g~-kiv---mlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~-Rga~~a~vVaDmP 104 (332)
T PLN02424 30 KYRRGE-PIT---MVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVA-RGANRPLLVGDLP 104 (332)
T ss_pred HHhCCC-cEE---EEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHh-ccCCCCEEEeCCC
Confidence 444443 555 7888999999999999999866442 111 1111110000 0 0011 123566665 22
Q ss_pred ---cCCCHHHHHHHH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----
Q 013813 165 ---CANDPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 234 (436)
Q Consensus 165 ---~g~d~e~~~~AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl----- 234 (436)
++.++++..+.| +++. .|+++|.|--|. ....++|+.+. ..++||.-=|-+
T Consensus 105 fgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~ 165 (332)
T PLN02424 105 FGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAI 165 (332)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceee
Confidence 234677777666 4545 689999998442 22345666665 558898833322
Q ss_pred ---------CCCh---hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 235 ---------FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 235 ---------g~~~---~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
|.+. ..+++-|+.++++|++.|.+-+.. -+..++|.+.++||+|+.|
T Consensus 166 ~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp------------~~la~~It~~l~IPtIGIG 224 (332)
T PLN02424 166 SVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVP------------APVAAAITSALQIPTIGIG 224 (332)
T ss_pred hhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCc------------HHHHHHHHHhCCCCEEeec
Confidence 1222 245677889999999999886543 2467899999999999887
|
|
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.038 Score=56.64 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=102.9
Q ss_pred CCCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
..|+...+.+.+++++.+-+ +.++.||..+-+..|-+.... + --.+++.-.+.|+++++.+ ++.+.|-..
T Consensus 112 ~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~--~-----~~~~~~~D~~~i~avr~~~g~~~~l~vDaN 184 (352)
T cd03325 112 RVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWI--D-----TSKKVDAAVERVAALREAVGPDIDIGVDFH 184 (352)
T ss_pred eeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccC--C-----CHHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 34555555666888776555 455679999999876321100 0 0013455677788888776 466777766
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.+++.++++.+++.|+.+| ++... .-||+..+++++...+||.+.=.+.+++++..+++...+|.|
T Consensus 185 ~~~~~~~A~~~~~~l~~~~i~~i-------EeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v 254 (352)
T cd03325 185 GRVSKPMAKDLAKELEPYRLLFI-------EEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDII 254 (352)
T ss_pred CCCCHHHHHHHHHhccccCCcEE-------ECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEE
Confidence 67888999999999999998887 22111 347888999999999999888789999999999988778887
Q ss_pred eee
Q 013813 314 LSA 316 (436)
Q Consensus 314 mIG 316 (436)
.+-
T Consensus 255 ~~d 257 (352)
T cd03325 255 QPD 257 (352)
T ss_pred ecC
Confidence 654
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.043 Score=57.72 Aligned_cols=124 Identities=13% Similarity=0.073 Sum_probs=93.7
Q ss_pred CCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~ 242 (436)
+.+++++.+-+ +.++.||..+-+..| .+++.-.+.++++++.++ +.+.|-...+|+.++++
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~ 257 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI 257 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 45777776555 456779999988754 134555677888888773 56666666678999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++++.+++.|+.+| ++... +-|++..+++++.+ ++||.+.=.+.+..++.++++...+|.+++
T Consensus 258 ~~~~~L~~~~l~~i-------EEP~~---~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 258 EWVKQLAEFKPWWI-------EEPTS---PDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred HHHHHhhccCCCEE-------ECCCC---CCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence 99999999998876 22111 34678888999887 699988778999999999998867887754
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0065 Score=57.82 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
..+..++|+.++++|+++|++..-... . .-..+.++.+++.+++||+.-|+|.+.++++.+++. |||+|.++-
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~----~--~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~-Gad~v~l~~ 102 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKY----F--QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAA-GADAVLLIV 102 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCccc----c--CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHc-CCCEEEEee
Confidence 457899999999999999987643322 1 123577888888889999999999999999998885 999999987
Q ss_pred HHhh
Q 013813 318 SLLE 321 (436)
Q Consensus 318 gal~ 321 (436)
..+.
T Consensus 103 ~~~~ 106 (217)
T cd00331 103 AALD 106 (217)
T ss_pred ccCC
Confidence 6654
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0041 Score=62.71 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
...++.+.+++.|+..|.+....+++... .+|+++++.++..++||||++.|-.+++..++.++.|.||+..
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGsn~---GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaL 513 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGSNK---GYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAAL 513 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCCCC---CcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhh
Confidence 56789999999999999998877765322 5899999999999999999999999999999999999999753
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.063 Score=53.74 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=91.6
Q ss_pred CCCCEEEEe-cCCCHHHHHHHHHHH-cCCCcEEEEecCC-CchhhhcCcccc---cccCChHHHHHHHHHHhcc-cCccE
Q 013813 156 EDRPLFVQF-CANDPEILLNAARRV-EPYCDYVDINLGC-PQRIARRGNYGA---FLMDNLPLVKSLVEKLALN-LNVPV 228 (436)
Q Consensus 156 ~e~plivQL-~g~d~e~~~~AA~~v-~~g~D~IdLN~GC-P~~~~~~~~~Gs---~Ll~~p~~v~eIv~av~~~-~~iPV 228 (436)
...|+++-+ .|.++..+.+.++.+ +.|+.+|.|--.+ |. +.+.+|+ ..+-..+...+.|++++++ .+.++
T Consensus 77 ~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk---~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~ 153 (285)
T TIGR02320 77 TTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLK---KNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDF 153 (285)
T ss_pred cCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCc---cccccCCCCcccccCHHHHHHHHHHHHHhccCCCe
Confidence 467877654 235888888888655 5699999995332 21 1122232 2344556666666666654 34444
Q ss_pred EEEecc-----CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-----CCcEEEccCCCCH
Q 013813 229 SCKIRV-----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHM 298 (436)
Q Consensus 229 sVKiRl-----g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-----~iPVianGGI~s~ 298 (436)
.|=-|. +...+++++-++...++|+|.|-+++.. .+.+.+.++.+.+ ++|++.+.+-...
T Consensus 154 ~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~----------~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~ 223 (285)
T TIGR02320 154 MIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK----------KDPDEILEFARRFRNHYPRTPLVIVPTSYYT 223 (285)
T ss_pred EEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------CCHHHHHHHHHHhhhhCCCCCEEEecCCCCC
Confidence 444442 2357889999999999999999998421 2234455555544 5688876531111
Q ss_pred HHHHHHHHhcCcceeeeehHHh
Q 013813 299 EDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal 320 (436)
-.+.++-+ -|+..|..|-.++
T Consensus 224 ~~~~eL~~-lG~~~v~~~~~~~ 244 (285)
T TIGR02320 224 TPTDEFRD-AGISVVIYANHLL 244 (285)
T ss_pred CCHHHHHH-cCCCEEEEhHHHH
Confidence 13444444 4999999885543
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.09 Score=52.64 Aligned_cols=161 Identities=15% Similarity=0.208 Sum_probs=93.4
Q ss_pred CCCEEEEecCC------CHHHHHHHHHHHcC--CC-cEEEEecC-CCc----hhhhcCccccccc--------CChHHHH
Q 013813 157 DRPLFVQFCAN------DPEILLNAARRVEP--YC-DYVDINLG-CPQ----RIARRGNYGAFLM--------DNLPLVK 214 (436)
Q Consensus 157 e~plivQL~g~------d~e~~~~AA~~v~~--g~-D~IdLN~G-CP~----~~~~~~~~Gs~Ll--------~~p~~v~ 214 (436)
..|+|+|+.-+ +.+.+...++.+.. .+ --|-||+. |.. ....+.||.|-+. .+-+..+
T Consensus 42 ~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Tr 121 (285)
T PRK07709 42 KSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTK 121 (285)
T ss_pred CCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Confidence 57788887542 23334434433322 11 13556652 332 1223344544333 3455666
Q ss_pred HHHHHHhcccCccEEEEec-cC-C-C--------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh
Q 013813 215 SLVEKLALNLNVPVSCKIR-VF-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 283 (436)
Q Consensus 215 eIv~av~~~~~iPVsVKiR-lg-~-~--------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~ 283 (436)
++++..+ ..+++|-.=+- +| . + ..++.+..+.+++.|+|.+.|.-.|..+.+......||+.+++|++
T Consensus 122 evv~~Ah-~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~ 200 (285)
T PRK07709 122 KVVEYAH-ARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRD 200 (285)
T ss_pred HHHHHHH-HcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHH
Confidence 6666654 33666655432 11 0 1 2244454555568899999774444444333333589999999999
Q ss_pred hCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 284 ALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 284 ~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 201 ~~~iPLVLHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l 236 (285)
T PRK07709 201 FTGVPLVLHGGTGIPTADIEKAISL-GTSKINVNTEN 236 (285)
T ss_pred HHCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEeChHH
Confidence 999999999986665 667777775 88888777654
|
|
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0086 Score=63.53 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc---c---CCCCCccCHHH-HHH
Q 013813 209 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---K---DGKKFRADWNA-IKA 280 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~---~---~~~~g~ad~~~-i~~ 280 (436)
.++-+.++|..+++.. ..+|+||+-.+...+.. +--+.++|+|.|+|.|-.... . ....| .-|++ +.+
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~i---aagvakA~AD~I~IdG~~GGTGAsP~~~~~~~G-iP~e~glae 361 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTI---AAGVAKAGADVITIDGADGGTGASPLTSIDHAG-IPWELGLAE 361 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccchHHH---HhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCC-chHHHHHHH
Confidence 4677889999998876 46799997654443332 222678999999997654321 0 01111 22433 222
Q ss_pred HHhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 281 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 281 ik~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+-+.+ .+-|++.||+.|..|+..++.. |||.|-+|+++|--
T Consensus 362 ~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aL-GAd~v~~gTa~lia 409 (485)
T COG0069 362 THQTLVLNGLRDKVKLIADGGLRTGADVAKAAAL-GADAVGFGTAALVA 409 (485)
T ss_pred HHHHHHHcCCcceeEEEecCCccCHHHHHHHHHh-CcchhhhchHHHHH
Confidence 22211 4789999999999999999986 99999999997643
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.083 Score=52.33 Aligned_cols=150 Identities=23% Similarity=0.284 Sum_probs=94.8
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCc-ccc--hhhccChh----hh---hhhhhccCCCCC-EEEEec-C---CCHHH-HH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPM-LHS--RIFTESEK----YR---NEEFATCKEDRP-LFVQFC-A---NDPEI-LL 173 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Tem-isa--~~l~~~~~----~~---~~~~~~~~~e~p-livQL~-g---~d~e~-~~ 173 (436)
|.++-|...-+++.+.|.++++|.- ++. .++..... .. ...+.. -.+.| +++-+- | .++++ +.
T Consensus 19 ~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r-~~~~p~vvaD~pfg~y~~~~~~av~ 97 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVAR-GAPRALVVADMPFGSYQASPEQALR 97 (264)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHh-cCCCCcEEEeCCCCCccCCHHHHHH
Confidence 6788899999999999999988762 111 11111100 00 011111 22344 666562 3 35565 55
Q ss_pred HHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE---------------EEeccCCC
Q 013813 174 NAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS---------------CKIRVFPN 237 (436)
Q Consensus 174 ~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs---------------VKiRlg~~ 237 (436)
.+.+.++ .|+++|.|--| +...+.|+++++. ++||. .|+ .|.+
T Consensus 98 ~a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i-~grt 156 (264)
T PRK00311 98 NAGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKV-QGRD 156 (264)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeee-ecCC
Confidence 5667777 69999998743 2455666666533 78875 233 2333
Q ss_pred ---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 238 ---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 238 ---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
.+++++-++.++++|++.|.+-+-. -+.+++|.+.+++|+|+.|
T Consensus 157 ~~~a~~~i~ra~a~~eAGA~~i~lE~v~------------~~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 157 EEAAEKLLEDAKALEEAGAFALVLECVP------------AELAKEITEALSIPTIGIG 203 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCC------------HHHHHHHHHhCCCCEEEec
Confidence 2366777889999999999885441 1568899999999999877
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0018 Score=62.65 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=47.1
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
=.|...|-+-..... + +++.-+.++..++..++|+|+.|||+|.++++++++. |||.|++|..+..|++
T Consensus 151 ~~g~~~iYLEaGSGa--~---~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~a-GAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA--Y---GPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEA-GADTIVVGNAIEEDPD 219 (230)
T ss_dssp HTT-SEEEEE--TTS--S---S-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCT-TSSEEEESCHHHHHH-
T ss_pred HhCCCEEEEEeCCCC--C---CCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHC-CCCEEEECCEEEEcch
Confidence 367777766543321 1 1222244555555569999999999999999999986 9999999999999998
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.015 Score=59.15 Aligned_cols=94 Identities=22% Similarity=0.279 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCc
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iP 288 (436)
++...+.++.++....+.+.+ +.+ .+..+.++.+.++|++.|.|....... ..-++.++.+++.. ++|
T Consensus 69 ~~~~~~~i~~vk~~l~v~~~~----~~~-~~~~~~~~~l~eagv~~I~vd~~~G~~------~~~~~~i~~ik~~~p~v~ 137 (325)
T cd00381 69 IEEQAEEVRKVKGRLLVGAAV----GTR-EDDKERAEALVEAGVDVIVIDSAHGHS------VYVIEMIKFIKKKYPNVD 137 (325)
T ss_pred HHHHHHHHHHhccCceEEEec----CCC-hhHHHHHHHHHhcCCCEEEEECCCCCc------HHHHHHHHHHHHHCCCce
Confidence 355566777776443333332 222 445677888888999999875422110 12257788898875 488
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
|++ |.|.|.++++.+++. |||+|.+|
T Consensus 138 Vi~-G~v~t~~~A~~l~~a-GaD~I~vg 163 (325)
T cd00381 138 VIA-GNVVTAEAARDLIDA-GADGVKVG 163 (325)
T ss_pred EEE-CCCCCHHHHHHHHhc-CCCEEEEC
Confidence 887 999999999999885 99999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.044 Score=56.24 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=93.2
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.+-+ +.++.||..+-|-+|- +++.-.+.++++++.++ +.+.|-..-+++.++++++
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg~----------------~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~ 201 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIGR----------------DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALAL 201 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCC----------------CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 567665554 5667899999886541 24556677888888774 6677776678899999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++.|+.+| ++.. .+-|++..+++++. +++||.+.=.+.+..++.++++...+|.|++
T Consensus 202 ~~~l~~~~~~~~-------EeP~---~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 202 ARAFADEGVTWF-------EEPV---SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred HHHHHHhCcchh-------hCCC---ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 999999988765 2211 13478889999999 8899998888999999999999867887764
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.058 Score=53.97 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=121.2
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCccc--c-hhhcc-----Chhhhh--hhhhccCCCCCEEEEec
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLH--S-RIFTE-----SEKYRN--EEFATCKEDRPLFVQFC 165 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temis--a-~~l~~-----~~~~~~--~~~~~~~~e~plivQL~ 165 (436)
|++.+..+..+++| ++-|.-=-+++.+.|.+.+||--.. . .++-. ...... ..+ ....+.|+++=+=
T Consensus 5 lr~l~~~~~~l~~p--~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I-~~~~~iPviaD~d 81 (285)
T TIGR02317 5 FRAALAKEDILQIP--GAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRI-TRVTDLPLLVDAD 81 (285)
T ss_pred HHHHHhCCCcEEeC--CCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHH-HhccCCCEEEECC
Confidence 55556555666666 4445444467778898887754321 1 11111 000000 001 1234689998763
Q ss_pred C--CCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC----CC
Q 013813 166 A--NDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF----PN 237 (436)
Q Consensus 166 g--~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg----~~ 237 (436)
. .++....+.++.+ +.|+.+|.|--...- .+.|.+++.-+-..+...+=|++++++. +.++.|=-|.. ..
T Consensus 82 ~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~p--K~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g 159 (285)
T TIGR02317 82 TGFGEAFNVARTVREMEDAGAAAVHIEDQVLP--KRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEG 159 (285)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCc--cccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccC
Confidence 2 3488888888755 569999999754311 1223333332334444444445554443 45566666652 34
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE---EccCCCCHHHHHHHHHhcCcceee
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL---ANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi---anGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+++++=++...++|+|.|-+++-+ +.+.++++.+.+++|++ ..||-.-.-+++++-+ -|+..|.
T Consensus 160 ~deAI~Ra~ay~~AGAD~vfi~g~~-----------~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~-lGv~~v~ 227 (285)
T TIGR02317 160 LDAAIERAKAYVEAGADMIFPEALT-----------SLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELRE-AGYKMVI 227 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHH-cCCcEEE
Confidence 6788888999999999999998632 24668888888888984 3334211123444444 4999999
Q ss_pred eehHHh
Q 013813 315 SAESLL 320 (436)
Q Consensus 315 IGRgal 320 (436)
.|..++
T Consensus 228 ~~~~~~ 233 (285)
T TIGR02317 228 YPVTAF 233 (285)
T ss_pred EchHHH
Confidence 995543
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.021 Score=58.75 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=73.6
Q ss_pred ccccCChHHHHHHHHHHhccc-CccEEEEeccCCC-hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH----HH
Q 013813 204 AFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NA 277 (436)
Q Consensus 204 s~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~-~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~----~~ 277 (436)
+..+.+|+ ..+-++.+++.. +.||.+=+-.... .-+..++.+.++..++|++.+|--.........+.-++ +.
T Consensus 99 ~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~ 177 (352)
T PRK05437 99 RAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDN 177 (352)
T ss_pred HhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHH
Confidence 34456787 777777788766 7898887544211 11233455666777899999986432211112223355 57
Q ss_pred HHHHHhhCCCcEEE--ccCCCCHHHHHHHHHhcCcceeeee
Q 013813 278 IKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 278 i~~ik~~~~iPVia--nGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+++.+++||+. +|.-.+.++++.+.+. |+|+|.++
T Consensus 178 i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~-Gvd~I~Vs 217 (352)
T PRK05437 178 IAEIVSALPVPVIVKEVGFGISKETAKRLADA-GVKAIDVA 217 (352)
T ss_pred HHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHc-CCCEEEEC
Confidence 88888888999986 6666788888887764 99998884
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.022 Score=58.88 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=79.9
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcC
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAG 252 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG 252 (436)
+-..++++|.|.|-|.-. + | +-..-.++++.+++.. ...|... + --+.+-++.|..+|
T Consensus 255 rl~ll~~aGvdvviLDSS--q--------G-----nS~~qiemik~iK~~yP~l~ViaG-----N-VVT~~qa~nLI~aG 313 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSS--Q--------G-----NSIYQLEMIKYIKETYPDLQIIAG-----N-VVTKEQAANLIAAG 313 (503)
T ss_pred HHHHhhhcCCcEEEEecC--C--------C-----cchhHHHHHHHHHhhCCCceeecc-----c-eeeHHHHHHHHHcc
Confidence 344456789999888732 1 2 2345578899998876 4444332 2 12234577788999
Q ss_pred ccEEEecc------Cccccc-CCCC-CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 253 CSLLAVHG------RTRDEK-DGKK-FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 253 ~d~I~VHg------Rt~~~~-~~~~-g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+|.+-|-- .|.+-. .+++ +.+-++ +.+.+...++|||+-|||.+..++.+.|.. ||+.||+|-
T Consensus 314 aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~-va~~A~q~gvpviADGGiq~~Ghi~KAl~l-GAstVMmG~ 384 (503)
T KOG2550|consen 314 ADGLRVGMGSGSICITQKVMACGRPQGTAVYK-VAEFANQFGVPCIADGGIQNVGHVVKALGL-GASTVMMGG 384 (503)
T ss_pred CceeEeccccCceeeeceeeeccCCcccchhh-HHHHHHhcCCceeecCCcCccchhHhhhhc-Cchhheecc
Confidence 99998832 222111 1111 122233 455666679999999999999999999986 999999994
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.028 Score=58.11 Aligned_cols=115 Identities=24% Similarity=0.362 Sum_probs=78.0
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEE-ec-cCcccccCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA-VH-GRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~-VH-gRt~~~~~~~~g~ad~~~i~ 279 (436)
-||..+.+.+++.++ . .+++||.+|.-.+.+.++....++.+.+.|..-|+ +| |-+.-+.. .....||..+.
T Consensus 207 I~s~~~~n~~LL~~~----a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~-~~~~ldl~~i~ 280 (360)
T PRK12595 207 IGARNMQNFELLKAA----G-RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKA-TRNTLDISAVP 280 (360)
T ss_pred ECcccccCHHHHHHH----H-ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCC-CCCCcCHHHHH
Confidence 377788887655544 3 45899999965556888888889999999986554 45 44322211 12247999999
Q ss_pred HHHhhCCCcEEEcc----CCCCHH--HHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 280 AVKNALRIPVLANG----NVRHME--DVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 280 ~ik~~~~iPVianG----GI~s~e--da~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.+++..++||+++- |-+..- -+..++. .||||+||=+=. ||..
T Consensus 281 ~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva-~GAdg~~iE~H~--dp~~ 329 (360)
T PRK12595 281 ILKQETHLPVMVDVTHSTGRRDLLLPTAKAALA-IGADGVMAEVHP--DPAV 329 (360)
T ss_pred HHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHH-cCCCeEEEEecC--CCCC
Confidence 99998899999943 322222 3344455 499999998665 6654
|
|
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.058 Score=55.93 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=102.5
Q ss_pred CCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+...+++.+++++.+-+ +.++.||..+-+..|=+.. . .++ ..+++.-.+.++++++.+ ++.+.|-..-
T Consensus 114 i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~--~---~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN~ 186 (382)
T PRK14017 114 IRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ--Y---IDS--PRKVDAAVARVAAVREAVGPEIGIGVDFHG 186 (382)
T ss_pred eeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc--c---ccc--HHHHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 4565556667888886555 4567799998887531110 0 000 123455677888888877 4667777666
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.+++..+++.+++.|+.+| ++... .-|++..+++++...+||.+.=.+.+.+++.++++...+|.|.
T Consensus 187 ~w~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~ 256 (382)
T PRK14017 187 RVHKPMAKVLAKELEPYRPMFI-------EEPVL---PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQ 256 (382)
T ss_pred CCCHHHHHHHHHhhcccCCCeE-------ECCCC---cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEe
Confidence 7888999999999999998877 22111 3468889999999999999988999999999999987788876
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 257 ~d 258 (382)
T PRK14017 257 PD 258 (382)
T ss_pred cC
Confidence 54
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.12 Score=51.78 Aligned_cols=167 Identities=17% Similarity=0.244 Sum_probs=96.9
Q ss_pred CCcEEEcc-CCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAP-MVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAP-M~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
++|+++|. +.+.+. .+.+.+.+.|++.+.|.-++.+.-.. ...|-++..-
T Consensus 12 ~nPv~~aag~~~~~~-~~~~~~~~~g~g~v~~kti~~~~~~g-------------~~~pr~~~~~--------------- 62 (301)
T PRK07259 12 KNPVMPASGTFGFGG-EYARFYDLNGLGAIVTKSTTLEPREG-------------NPTPRIAETP--------------- 62 (301)
T ss_pred CCCcEECCcCCCCCH-HHHHHhhhcCCcEEEeCCCCCCCCCC-------------CCCCcEEecC---------------
Confidence 67888887 465555 44445567899999888876542111 1123232220
Q ss_pred CCCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC-ccEEEe
Q 013813 181 PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAV 258 (436)
Q Consensus 181 ~g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG-~d~I~V 258 (436)
+++ +| +|-+.. | -...+.++.... +..+.|+.+=+. |.+.++..+.|+.++++| +|+|.+
T Consensus 63 ---~~~-~n~~g~~~~-------g-----~~~~~~~~~~~~-~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iEl 124 (301)
T PRK07259 63 ---GGM-LNAIGLQNP-------G-----VDAFIEEELPWL-EEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIEL 124 (301)
T ss_pred ---Cce-eecCCCCCc-------C-----HHHHHHHHHHHH-hccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEE
Confidence 111 12 222211 1 012334444433 344788888864 456788899999999999 999988
Q ss_pred ccCcccccC-----CCCCccCHHHHHHHHhhCCCcEEE--ccCCCCHHHHHHHHHhcCcceeee
Q 013813 259 HGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 259 HgRt~~~~~-----~~~g~ad~~~i~~ik~~~~iPVia--nGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.-...... ......-++.++.+++.+++||++ +.++.+..++.+.+++.|+|+|.+
T Consensus 125 N~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 125 NISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred ECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 432111101 111122357778888888899875 445555556666677779999765
|
|
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.047 Score=56.26 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ 244 (436)
.++.+.++++.+. .|++.+-|..||+... .-.+.++++++.++ +.+.+-..-+++.++++.+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence 6777777887665 6999999999988642 44566777787774 6777776678888889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++.++.+| ++.. .+-|++..+++++.+.+||.+.=-+.+..|++++++...+|.|++
T Consensus 208 ~~~l~~~~l~~i-------EeP~---~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 208 ARALEEYGLEWI-------EEPL---PPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred HHHhcccCcceE-------ECCC---CccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecC
Confidence 999999997776 2211 134788889999987899999999999999999999866888764
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.044 Score=52.01 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=84.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 237 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~ 237 (436)
.++.+-|=-.+.++..+.++.+....++|+++..+=. .+| .++++++++...+++.+|+= .-
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~------~~G----------~~~v~~ir~~~~i~~D~k~~--di 65 (215)
T PRK13813 4 SRIILALDVTDRERALKIAEELDDYVDAIKVGWPLVL------ASG----------LGIIEELKRYAPVIADLKVA--DI 65 (215)
T ss_pred CCEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHHH------hhC----------HHHHHHHHhcCCEEEEeecc--cc
Confidence 3466666445555555444444445688888853311 133 25666777666777778853 11
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccc----------cCC---------------------------------CCC---
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDE----------KDG---------------------------------KKF--- 271 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~----------~~~---------------------------------~~g--- 271 (436)
......+++.+.++|+|.+++|.-.... ..+ ..|
T Consensus 66 ~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~ 145 (215)
T PRK13813 66 PNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA 145 (215)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 1223334577778999999998754100 000 000
Q ss_pred -ccCHHHHHHHHhhCCCc-EEEccCCCCH-HHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 272 -RADWNAIKAVKNALRIP-VLANGNVRHM-EDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 272 -~ad~~~i~~ik~~~~iP-VianGGI~s~-eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
....+.++++++..+-. .+..|||... ..+..+++. |+|++++||+++..++.
T Consensus 146 ~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~a-Gad~iV~Gr~I~~~~d~ 201 (215)
T PRK13813 146 PATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKA-GADYVIVGRSIYNAADP 201 (215)
T ss_pred CCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHc-CCCEEEECcccCCCCCH
Confidence 00122334555544322 3477999864 246777775 99999999998776653
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.38 Score=45.95 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=101.1
Q ss_pred CCCCcHHHHHHHHHhCCCeEEeCcc--cchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEE
Q 013813 111 VDNSELPFRMLCRRYGAEAAYTPML--HSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 111 ~gvtd~~fR~l~~~~Ga~l~~Temi--sa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdL 188 (436)
-|+++..=-.+|.++|++++--=+. |.+ +...+..+ ......+.....+.=+...+++.+.+.++ +.+.|.|.|
T Consensus 8 CGi~~~eda~~~~~~Gad~iGfI~~~~S~R-~V~~~~a~-~i~~~~~~~i~~VgVf~~~~~~~i~~~~~--~~~~d~vQL 83 (210)
T PRK01222 8 CGITTPEDAEAAAELGADAIGFVFYPKSPR-YVSPEQAA-ELAAALPPFVKVVGVFVNASDEEIDEIVE--TVPLDLLQL 83 (210)
T ss_pred CCCCcHHHHHHHHHcCCCEEEEccCCCCCC-cCCHHHHH-HHHHhCCCCCCEEEEEeCCCHHHHHHHHH--hcCCCEEEE
Confidence 4777777778899999986332111 222 22111111 11121122222333344567777766654 236799999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
|-.. +++. ++.+++..++++.--++.... .+... +... ...+|++.+..... ..+
T Consensus 84 Hg~e----------------~~~~----~~~l~~~~~~~iik~i~v~~~-~~l~~-~~~~-~~~~d~~L~Ds~~~--~~G 138 (210)
T PRK01222 84 HGDE----------------TPEF----CRQLKRRYGLPVIKALRVRSA-GDLEA-AAAY-YGDADGLLLDAYVG--LPG 138 (210)
T ss_pred CCCC----------------CHHH----HHHHHhhcCCcEEEEEecCCH-HHHHH-HHhh-hccCCEEEEcCCCC--CCC
Confidence 9422 2333 344555456777655555422 22211 1111 23578888876543 223
Q ss_pred CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 269 KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 269 ~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++| ..||+.+. +..+.|++..|||. ++.+.++++..+..||=+.+|.=..|
T Consensus 139 GtG~~~dw~~l~---~~~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~ 190 (210)
T PRK01222 139 GTGKTFDWSLLP---AGLAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAP 190 (210)
T ss_pred CCCCccchHHhh---hccCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCC
Confidence 333 46898772 12367999999996 78899988866888888877764433
|
|
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.073 Score=55.43 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=93.0
Q ss_pred CCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
.+++++.+.+ +.++.||..+-|..|- .+++.-.+.|+++++.+ ++.+.|-..-+|+.++++.
T Consensus 159 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~ 223 (385)
T cd03326 159 DDLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIA 223 (385)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 3566665555 5567799999997641 23444567777888776 4677777777789999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc----ceeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC----EGVLS 315 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa----DgVmI 315 (436)
+++.+++.++.+| ++... +-|++..+++++.+++||.+.=.+.+..++.++++...+ |.|++
T Consensus 224 ~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~ 289 (385)
T cd03326 224 YAKALAPYGLRWY-------EEPGD---PLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQF 289 (385)
T ss_pred HHHHhhCcCCCEE-------ECCCC---ccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEe
Confidence 9999999998877 22111 347888999999999999998899999999999987444 76653
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.053 Score=51.67 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=84.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCch-----hhhc----CcccccccCChHHHHHHHHHHhcccCc
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR-----IARR----GNYGAFLMDNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~-----~~~~----~~~Gs~Ll~~p~~v~eIv~av~~~~~i 226 (436)
..+++.=|-+.++++..+.++.+ +.|++.||+.+-.|.. ..++ -.-|+.-.-+++.+++.+++=.
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA----- 81 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA----- 81 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-----
Confidence 46788779999999999999866 5589999999855542 0000 0012222233343333333210
Q ss_pred cEEEEeccCCChhhHHHH-----------------HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCc
Q 013813 227 PVSCKIRVFPNLQDTIKY-----------------AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIP 288 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~-----------------ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iP 288 (436)
.+.|- .+.+ .+..+. +..+.++|++.|-+..-.. . |. -.+++.++.- .++|
T Consensus 82 ~Fivs--P~~~-~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~-----~-GG--~~yikal~~plp~i~ 150 (204)
T TIGR01182 82 QFIVS--PGLT-PELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEV-----S-GG--VKMLKALAGPFPQVR 150 (204)
T ss_pred CEEEC--CCCC-HHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchh-----c-CC--HHHHHHHhccCCCCc
Confidence 00000 0000 011010 1112334444443332110 0 00 3668888764 4899
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++..|||. .+.+.++|+. |+.+|.+|+.+.....
T Consensus 151 ~~ptGGV~-~~N~~~~l~a-Ga~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 151 FCPTGGIN-LANVRDYLAA-PNVACGGGSWLVPKDL 184 (204)
T ss_pred EEecCCCC-HHHHHHHHhC-CCEEEEEChhhcCchh
Confidence 99999997 5999999997 9999999987775433
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.031 Score=56.12 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=67.4
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l 305 (436)
.|+.+.+-...+.+...+.++.+++.|++.|.+|.-..... . ...|+.++++++.+++||+.- +|.+.++++.+.
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~--~--~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~ 190 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLG--R--RLTWDDLAWLRSQWKGPLILK-GILTPEDALRAV 190 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--C--CCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHH
Confidence 68888875554667777888888999999999987544321 1 257899999999999999886 478999999888
Q ss_pred HhcCcceeeee
Q 013813 306 EETGCEGVLSA 316 (436)
Q Consensus 306 ~~tGaDgVmIG 316 (436)
+. |+|+|.+.
T Consensus 191 ~~-G~d~I~v~ 200 (299)
T cd02809 191 DA-GADGIVVS 200 (299)
T ss_pred HC-CCCEEEEc
Confidence 75 99999874
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.042 Score=54.59 Aligned_cols=115 Identities=19% Similarity=0.255 Sum_probs=79.6
Q ss_pred HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 177 RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
++++ +|+-+|-.=---|......+ |-+=+++|+.+.+| ++.+++||.-++|.+. ..-++.+.++|+|.
T Consensus 22 ~~ae~aga~~v~~~~~~~~~~~~~~--~v~R~~~~~~I~~I----k~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvDi 90 (283)
T cd04727 22 RIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIKEI----MDAVSIPVMAKVRIGH-----FVEAQILEALGVDM 90 (283)
T ss_pred HHHHHcCceEEeeeccCchhhhhcC--CeeecCCHHHHHHH----HHhCCCCeEEeeehhH-----HHHHHHHHHcCCCE
Confidence 3444 36444433223566553333 77788888876655 5556899999988754 44578899999999
Q ss_pred EEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 256 LAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 256 I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
|.-+.|.+ + ..+.+..+|...++|++ .|+.|.+++.+..+. |+|.|-
T Consensus 91 IDaT~r~r--------P-~~~~~~~iK~~~~~l~M--AD~stleEal~a~~~-Gad~I~ 137 (283)
T cd04727 91 IDESEVLT--------P-ADEEHHIDKHKFKVPFV--CGARNLGEALRRISE-GAAMIR 137 (283)
T ss_pred EeccCCCC--------c-HHHHHHHHHHHcCCcEE--ccCCCHHHHHHHHHC-CCCEEE
Confidence 95333322 2 35678888887766665 589999999999997 999764
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.077 Score=52.09 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=90.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~ 236 (436)
|+..-+.+.+++...++.+.++.||..+-+-+| ..+++.-.+.++++++.++ +.+.+-..-+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w 138 (263)
T cd03320 74 PVNALLPAGDAAALGEAKAAYGGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDANGGW 138 (263)
T ss_pred ceeEEecCCCHHHHHHHHHHHhCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCCCCC
Confidence 344445556665555555666779999988754 1223445566777777663 45555555578
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.+++..+++.+++.++.+| ++... +-|++..++++ .++||.+.=.+.+.+++.++++...+|.|++
T Consensus 139 ~~~~A~~~~~~l~~~~i~~i-------EqP~~---~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~ 205 (263)
T cd03320 139 SLEEALAFLEALAAGRIEYI-------EQPLP---PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGALVL 205 (263)
T ss_pred CHHHHHHHHHhhcccCCceE-------ECCCC---hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEEEE
Confidence 88999999999999888776 22111 23566666666 6899999888999999999999867887765
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.015 Score=57.24 Aligned_cols=150 Identities=22% Similarity=0.282 Sum_probs=68.1
Q ss_pred CCCCEEEEecCCCHHH-HHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCC---hHHHHHHHHHHhcc-c-CccE
Q 013813 156 EDRPLFVQFCANDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDN---LPLVKSLVEKLALN-L-NVPV 228 (436)
Q Consensus 156 ~e~plivQL~g~d~e~-~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~---p~~v~eIv~av~~~-~-~iPV 228 (436)
.+.|++.=+++.||-. +..-.+.+. .||.+|. |+ |..-...|.|...|... .++=.++++..++. . .+|+
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--E
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeee
Confidence 5689999999999853 333334454 4888874 65 54322233333333221 11112333333322 1 2232
Q ss_pred EEEeccCCChhhHHHHHHHHHHcCccEEEecc-CcccccCCCCCccCH----HHHHHHHhh---C--CCc-EEEccCCCC
Q 013813 229 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADW----NAIKAVKNA---L--RIP-VLANGNVRH 297 (436)
Q Consensus 229 sVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg-Rt~~~~~~~~g~ad~----~~i~~ik~~---~--~iP-VianGGI~s 297 (436)
.. +.++ |+.+.++|+|.|++|- .|..+.-+.+....+ +.+.++.+. + ++- ++..|-|.+
T Consensus 157 vf------~~e~----A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~ 226 (268)
T PF09370_consen 157 VF------NEEQ----ARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIAT 226 (268)
T ss_dssp E-------SHHH----HHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-S
T ss_pred ec------CHHH----HHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 21 3333 5556689999999994 454433222111222 223333332 2 444 445556999
Q ss_pred HHHHHHHHHhcC-cceeeeehH
Q 013813 298 MEDVQKCLEETG-CEGVLSAES 318 (436)
Q Consensus 298 ~eda~~~l~~tG-aDgVmIGRg 318 (436)
++|++.+++.+. ++|..-|..
T Consensus 227 p~D~~~~l~~t~~~~Gf~G~Ss 248 (268)
T PF09370_consen 227 PEDAQYVLRNTKGIHGFIGASS 248 (268)
T ss_dssp HHHHHHHHHH-TTEEEEEESTT
T ss_pred HHHHHHHHhcCCCCCEEecccc
Confidence 999999999986 899876643
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.079 Score=54.56 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=93.5
Q ss_pred CCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRl 234 (436)
.|+-..+.+.+++.+.+.+ +..+.||..+-+.. .+.|+++++.++ +.+.+...-
T Consensus 116 v~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN~ 172 (361)
T cd03322 116 IMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVHH 172 (361)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECCC
Confidence 3444444556777775554 45667988887742 456788887773 667777666
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+|+.+++..+++.+++.++.+| ++... +-|++..+++++..++||.+.=.+.+.+++.++++...+|.+.
T Consensus 173 ~w~~~~A~~~~~~l~~~~l~~i-------EeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~ 242 (361)
T cd03322 173 RLTPNQAARFGKDVEPYRLFWM-------EDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIR 242 (361)
T ss_pred CCCHHHHHHHHHHhhhcCCCEE-------ECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEe
Confidence 7899999999999999988876 22111 3478889999999999999888899999999999986788775
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 243 ~d 244 (361)
T cd03322 243 TT 244 (361)
T ss_pred cC
Confidence 43
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.033 Score=55.24 Aligned_cols=110 Identities=15% Similarity=0.252 Sum_probs=75.8
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-ccCcccc-cCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDE-KDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-HgRt~~~-~~~~~g~ad~~~i~ 279 (436)
-||..+.+.+++.++ ...++||.+|--...+.++....++.+...|-..+++ |..++.. .+. ....|+..+.
T Consensus 116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~-~~~vdl~~i~ 189 (266)
T PRK13398 116 IGSRNMQNFELLKEV-----GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYT-RNTLDLAAVA 189 (266)
T ss_pred ECcccccCHHHHHHH-----hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC-HHHHHHHHHH
Confidence 477888887776655 2568999999666667888888888999999865544 5322111 121 1246888889
Q ss_pred HHHhhCCCcEEEc-cCCCC-----HHHHHHHHHhcCcceeeeehH
Q 013813 280 AVKNALRIPVLAN-GNVRH-----MEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 280 ~ik~~~~iPVian-GGI~s-----~eda~~~l~~tGaDgVmIGRg 318 (436)
.+++..++||+.. .=... ...+...+.. ||||+||=+-
T Consensus 190 ~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~-Ga~Gl~iE~H 233 (266)
T PRK13398 190 VIKELSHLPIIVDPSHATGRRELVIPMAKAAIAA-GADGLMIEVH 233 (266)
T ss_pred HHHhccCCCEEEeCCCcccchhhHHHHHHHHHHc-CCCEEEEecc
Confidence 9998889999983 33333 4555566654 9999998743
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.036 Score=56.57 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=71.4
Q ss_pred ccccCChHHHHHHHHHHhc-ccCccEEEEeccCCChh-hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH----HH
Q 013813 204 AFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NA 277 (436)
Q Consensus 204 s~Ll~~p~~v~eIv~av~~-~~~iPVsVKiRlg~~~~-d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~----~~ 277 (436)
+..+.+|+...+. +.+++ ..++|+.+-+....... +..++.+.++..+++++.+|--.........+..++ +.
T Consensus 92 ~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~ 170 (333)
T TIGR02151 92 RAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEK 170 (333)
T ss_pred hhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHH
Confidence 3345678876666 66776 56899988754321111 133455556666788888886432211111123344 67
Q ss_pred HHHHHhhCCCcEEE--ccCCCCHHHHHHHHHhcCcceeeee
Q 013813 278 IKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 278 i~~ik~~~~iPVia--nGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+++.+++||+. +|.-.+.+.++.+.+ .|+|+|-++
T Consensus 171 i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~-aGvd~I~Vs 210 (333)
T TIGR02151 171 IAEICSQLSVPVIVKEVGFGISKEVAKLLAD-AGVSAIDVA 210 (333)
T ss_pred HHHHHHhcCCCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 88899988999986 565578888877666 499999886
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.025 Score=52.43 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=59.2
Q ss_pred CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccC
Q 013813 182 YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 182 g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgR 261 (436)
|+-+|-.=---|......| |-+=|.||..+.+|.+++ .+||..|.|+|... -|+.|++.|+|+|.=+--
T Consensus 34 GA~AVMaLervPadiR~~G--GVaRMsDP~~I~eI~~aV----sIPVMAK~RIGHfv-----EAqiLealgVD~IDESEV 102 (208)
T PF01680_consen 34 GAVAVMALERVPADIRAAG--GVARMSDPKMIKEIMDAV----SIPVMAKVRIGHFV-----EAQILEALGVDYIDESEV 102 (208)
T ss_dssp T-SEEEE-SS-HHHHHHTT--S---S--HHHHHHHHHH-----SSEEEEEEETT-HH-----HHHHHHHTT-SEEEEETT
T ss_pred CCeEEEEeccCCHhHHhcC--CccccCCHHHHHHHHHhe----Eeceeeccccceee-----hhhhHHHhCCceeccccc
Confidence 5434433223455544443 788999999988887664 79999999998632 288999999999965422
Q ss_pred cccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 262 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 262 t~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-. ++|... .--|...++|++. |-++.-++.+-+.+ ||..+
T Consensus 103 LT--------pAD~~~-HI~K~~F~vPFVc--GarnLGEALRRI~E-GAaMI 142 (208)
T PF01680_consen 103 LT--------PADEEN-HIDKHNFKVPFVC--GARNLGEALRRIAE-GAAMI 142 (208)
T ss_dssp S----------S-SS-----GGG-SS-EEE--EESSHHHHHHHHHT-T-SEE
T ss_pred cc--------cccccc-cccchhCCCCeEe--cCCCHHHHHhhHHh-hhhhh
Confidence 11 333322 1223446888765 45678888877776 66544
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.12 Score=50.86 Aligned_cols=152 Identities=20% Similarity=0.224 Sum_probs=94.8
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCc-ccch--hhccChh----hh---hhhhhccCCCCC-EEEEec-C---CCHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPM-LHSR--IFTESEK----YR---NEEFATCKEDRP-LFVQFC-A---NDPEILLN 174 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Tem-isa~--~l~~~~~----~~---~~~~~~~~~e~p-livQL~-g---~d~e~~~~ 174 (436)
|.++=|..+-+++.+.|.+.++|.- ++.. ++..... .. ...+. .-.+.| +++=+- | +++++..+
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~-r~~~~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVR-RGAPRALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHH-hcCCCCeEEEeCCCCcccCCHHHHHH
Confidence 6678899999999999999988762 1111 1111100 00 00111 133567 555452 2 45777666
Q ss_pred HH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--------------CCC-
Q 013813 175 AA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--------------FPN- 237 (436)
Q Consensus 175 AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--------------g~~- 237 (436)
.+ +.++ .|+++|.|--| ....+.|+++++ .++||.-=+-+ +.+
T Consensus 95 ~a~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~ 154 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG-------------------AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTE 154 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCH
Confidence 55 6667 79999998743 245555666653 36776622211 222
Q ss_pred --hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC
Q 013813 238 --LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 294 (436)
Q Consensus 238 --~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG 294 (436)
.+++++-++.++++|++.|.+-+-. -+.+++|.+.+++|+|+.|.
T Consensus 155 ~~a~~~i~ra~a~~~AGA~~i~lE~v~------------~~~~~~i~~~v~iP~igiGa 201 (254)
T cd06557 155 EEAERLLEDALALEEAGAFALVLECVP------------AELAKEITEALSIPTIGIGA 201 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcCCC------------HHHHHHHHHhCCCCEEEecc
Confidence 3466777889999999999885442 15688999999999998883
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.094 Score=53.53 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=99.5
Q ss_pred CCEEEEe-cCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 158 RPLFVQF-CANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL-~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
.|+.... ...+++++.+-+ +.++.||..+-+..|... .. + ..+++.-.+.++++++.+ ++.+.+-..
T Consensus 109 i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~----~~--~---~~~~~~d~~~v~avr~~~g~~~~l~vDan 179 (341)
T cd03327 109 IPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGP----SD--G---HAGLRKNVELVRAIREAVGYDVDLMLDCY 179 (341)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC----Cc--c---hHHHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 4444443 245788776555 456779999998765310 00 0 013456677788888877 356777666
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.+++..+++.+++.++.+| ++... +-|++..+.+++.+++||.+.=.+.+..++.++++...+|.|
T Consensus 180 ~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i 249 (341)
T cd03327 180 MSWNLNYAIKMARALEKYELRWI-------EEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDIL 249 (341)
T ss_pred CCCCHHHHHHHHHHhhhcCCccc-------cCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEE
Confidence 67888999999999999887665 22111 347888999999999999988889999999999998778887
Q ss_pred eee
Q 013813 314 LSA 316 (436)
Q Consensus 314 mIG 316 (436)
++-
T Consensus 250 ~~d 252 (341)
T cd03327 250 QPD 252 (341)
T ss_pred ecC
Confidence 643
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.42 Score=48.99 Aligned_cols=156 Identities=11% Similarity=0.108 Sum_probs=83.9
Q ss_pred CCCCEEEEecCCCH--------HHHH-HHHHHHcCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhccc
Q 013813 156 EDRPLFVQFCANDP--------EILL-NAARRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 224 (436)
Q Consensus 156 ~e~plivQL~g~d~--------e~~~-~AA~~v~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~ 224 (436)
.+.|+++.|-++.. +.+. ..-+.+.-|+|+|-+ |+|.+.. -+..+.+.+++++. ...
T Consensus 124 ~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E-----------~~ml~~l~~i~~ea-~~~ 191 (348)
T PRK09250 124 HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEES-----------RRQIEEISEAFEEA-HEL 191 (348)
T ss_pred CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHH-----------HHHHHHHHHHHHHH-HHh
Confidence 35678888776421 1111 112345668887655 5553321 01123445555554 345
Q ss_pred CccEEEEec-cCCC----------hhhHHHHHHHHHHcCccEEEeccCc-------------ccccC-CCCCccCHHHHH
Q 013813 225 NVPVSCKIR-VFPN----------LQDTIKYAKMLEDAGCSLLAVHGRT-------------RDEKD-GKKFRADWNAIK 279 (436)
Q Consensus 225 ~iPVsVKiR-lg~~----------~~d~~~~ak~le~aG~d~I~VHgRt-------------~~~~~-~~~g~ad~~~i~ 279 (436)
++|+.+=+= .|.. .+-+...++...+.|+|.|-+---+ ....+ .......-+.++
T Consensus 192 GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~ 271 (348)
T PRK09250 192 GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVR 271 (348)
T ss_pred CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHH
Confidence 899876321 1211 1223345677889999999763211 11000 011111234456
Q ss_pred HHHhhC---CCcEEEccCCC-CHHHHH----HH---HHhcCcceeeeehHHhhCCc
Q 013813 280 AVKNAL---RIPVLANGNVR-HMEDVQ----KC---LEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 280 ~ik~~~---~iPVianGGI~-s~eda~----~~---l~~tGaDgVmIGRgal~nP~ 324 (436)
.+.+.. .+||+..||=. +.+++. .+ ++ .|+.||.+||-....|.
T Consensus 272 ~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~-aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 272 YQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKR-AGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhh-cCCcchhhchhhhcCCc
Confidence 666665 79999999877 444444 44 44 49999999997665553
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.079 Score=56.86 Aligned_cols=69 Identities=23% Similarity=0.389 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+.++.+.++|++.|++-.-.... ..-++.++.+++.. ++||++ |+|.|.+++..+++. |||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~------~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~a-Gad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHS------EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEA-GADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcc------hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHc-CCCEEEEC
Confidence 45778899999999988763211100 12357788888876 899888 999999999999986 99999775
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.11 Score=52.25 Aligned_cols=205 Identities=16% Similarity=0.127 Sum_probs=123.1
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc--ccch--hhccChhh-hhhhh-----hccCCCCCEEEEec
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM--LHSR--IFTESEKY-RNEEF-----ATCKEDRPLFVQFC 165 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem--isa~--~l~~~~~~-~~~~~-----~~~~~e~plivQL~ 165 (436)
|++.+-.+..+++|= +-|.-=-+++.+.|.+.+||-- +++. ++-..... ....+ -....+.|+++=+=
T Consensus 9 lr~ll~~~~~l~~p~--~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d 86 (292)
T PRK11320 9 FRAALAAEKPLQIVG--TINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDID 86 (292)
T ss_pred HHHHHcCCCcEEecC--CCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECC
Confidence 666666666666654 4454444677788988877543 2211 11111000 00000 01234679998763
Q ss_pred C--CCHHHHHHHHHHH-cCCCcEEEEecCC-CchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC----C
Q 013813 166 A--NDPEILLNAARRV-EPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF----P 236 (436)
Q Consensus 166 g--~d~e~~~~AA~~v-~~g~D~IdLN~GC-P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg----~ 236 (436)
. .++....+.++.+ +.|+.+|.|--.. |. +.+..++.-+-..+...+=|++++++. +.++.|=-|.. .
T Consensus 87 ~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~ 163 (292)
T PRK11320 87 TGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAK---RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVE 163 (292)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccccc
Confidence 2 2889998888765 5699999996543 22 123333333334454444445544443 56666666652 3
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE---ccCC---CCHHHHHHHHHhcCc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA---NGNV---RHMEDVQKCLEETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia---nGGI---~s~eda~~~l~~tGa 310 (436)
..+++++=++...++|+|.|-+++-+ +.+.++++.+.++.|+++ +||- .+.++ +-+ -|+
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifi~~~~-----------~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~---L~~-lGv 228 (292)
T PRK11320 164 GLDAAIERAQAYVEAGADMIFPEAMT-----------ELEMYRRFADAVKVPILANITEFGATPLFTTEE---LAS-AGV 228 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCC-----------CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHH---HHH-cCC
Confidence 46788888999999999999998732 357788888888888843 3432 34444 333 499
Q ss_pred ceeeeehHHh
Q 013813 311 EGVLSAESLL 320 (436)
Q Consensus 311 DgVmIGRgal 320 (436)
..|..|-.++
T Consensus 229 ~~v~~~~~~~ 238 (292)
T PRK11320 229 AMVLYPLSAF 238 (292)
T ss_pred cEEEEChHHH
Confidence 9999996554
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.065 Score=53.05 Aligned_cols=143 Identities=13% Similarity=0.221 Sum_probs=85.2
Q ss_pred CCCCEEEEecCCC-------HHHHHHHH-HHHcCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC
Q 013813 156 EDRPLFVQFCAND-------PEILLNAA-RRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225 (436)
Q Consensus 156 ~e~plivQL~g~d-------~e~~~~AA-~~v~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~ 225 (436)
.+.|++++|-++. .+.+.-.. +.++-|+|+|-+ |.|.+.. -+..+.+.+++++. ...+
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E-----------~~~l~~l~~v~~ea-~~~G 140 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYE-----------HQSIKNIIQLVDAG-LRYG 140 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHH-----------HHHHHHHHHHHHHH-HHhC
Confidence 3567888888742 12222212 345668887655 5553321 01123344555553 3558
Q ss_pred ccEEEEeccCCCh----hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCC-HHH
Q 013813 226 VPVSCKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MED 300 (436)
Q Consensus 226 iPVsVKiRlg~~~----~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s-~ed 300 (436)
+|+.+=.-.|... +-+...++...+.|+|.|-+- |++ +.++++.+...+||+..||=+. .++
T Consensus 141 ~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~---------y~~----~~f~~vv~a~~vPVviaGG~k~~~~~ 207 (264)
T PRK08227 141 MPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY---------YVE----EGFERITAGCPVPIVIAGGKKLPERD 207 (264)
T ss_pred CcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC---------CCH----HHHHHHHHcCCCcEEEeCCCCCCHHH
Confidence 9988833234322 222344677889999998442 222 5677888888999999998763 344
Q ss_pred HHH----HHHhcCcceeeeehHHhhCCc
Q 013813 301 VQK----CLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 301 a~~----~l~~tGaDgVmIGRgal~nP~ 324 (436)
+.+ .++ .|+.||.+||=....+.
T Consensus 208 ~L~~v~~ai~-aGa~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 208 ALEMCYQAID-EGASGVDMGRNIFQSEH 234 (264)
T ss_pred HHHHHHHHHH-cCCceeeechhhhccCC
Confidence 443 444 49999999997766554
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=62.06 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=58.3
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc---eeeeehHHhh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE---GVLSAESLLE 321 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD---gVmIGRgal~ 321 (436)
+..+.+.|+|+|.+..-..........+..++.++.+++..++||++-|||. .+++.++++. |++ +|.++++++.
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~~-G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVMES-GAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHHHc-CCCcCceEEEEeHHhc
Confidence 4556678999998643322211111124578999999888899999999996 8999988875 888 9999999986
Q ss_pred CCcc
Q 013813 322 NPAL 325 (436)
Q Consensus 322 nP~l 325 (436)
.++.
T Consensus 481 ~~d~ 484 (502)
T PLN02898 481 QEDV 484 (502)
T ss_pred CCCH
Confidence 5443
|
|
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.16 Score=52.35 Aligned_cols=133 Identities=16% Similarity=0.243 Sum_probs=93.3
Q ss_pred CCEEEEecCCCHHH-HHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEec
Q 013813 158 RPLFVQFCANDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~-~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiR 233 (436)
.|+...+...++++ +.++.+.++ .||..+-+-.| . .+++.-.+.++++++.++ +.+.+-..
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg------------~---~~~~~d~~~v~~~re~~g~~~~l~~DaN 195 (368)
T TIGR02534 131 VDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIG------------A---RDPADDVAHVVAIAKALGDRASVRVDVN 195 (368)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeC------------C---CCcHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 45555555555554 444444453 68988888654 1 234445566777777663 44555555
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.+++.++++.+++.++.+| ++... +-|++..+++++...+||.+.-.+.+..++.++++..++|.|
T Consensus 196 ~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~ 265 (368)
T TIGR02534 196 AAWDERTALHYLPQLADAGVELI-------EQPTP---AENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVF 265 (368)
T ss_pred CCCCHHHHHHHHHHHHhcChhhe-------ECCCC---cccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEE
Confidence 56888999999999999887665 22111 246788889999999999998899999999999998788987
Q ss_pred ee
Q 013813 314 LS 315 (436)
Q Consensus 314 mI 315 (436)
.+
T Consensus 266 ~~ 267 (368)
T TIGR02534 266 AL 267 (368)
T ss_pred EE
Confidence 64
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.12 Score=54.19 Aligned_cols=142 Identities=16% Similarity=0.199 Sum_probs=98.5
Q ss_pred ecCCCHHHHH-HHHHHHcCCCcEEEEecCCCch---h-hhcC---cccc--cc-------c---CChHHHHHHHHHHhcc
Q 013813 164 FCANDPEILL-NAARRVEPYCDYVDINLGCPQR---I-ARRG---NYGA--FL-------M---DNLPLVKSLVEKLALN 223 (436)
Q Consensus 164 L~g~d~e~~~-~AA~~v~~g~D~IdLN~GCP~~---~-~~~~---~~Gs--~L-------l---~~p~~v~eIv~av~~~ 223 (436)
+.+.+++++. ++.+.++.||..+-+.+|-|-. . ...+ .++- .. . ...+...+.|+++++.
T Consensus 123 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 123 ANGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 4566777765 4445667799999998764310 0 0000 0000 00 0 1124446788899888
Q ss_pred c--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHH
Q 013813 224 L--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 301 (436)
Q Consensus 224 ~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda 301 (436)
+ ++.+.+-..-+++.+++..+++.+++.++.+| ++... .-+++..+++++.+++||.+.=.+.+..++
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~i-------EeP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~ 272 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWL-------EDPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDC 272 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhccccCCcEE-------ECCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHH
Confidence 7 46677776667899999999999999988776 22111 346888999999999999998889999999
Q ss_pred HHHHHhcCcceeee
Q 013813 302 QKCLEETGCEGVLS 315 (436)
Q Consensus 302 ~~~l~~tGaDgVmI 315 (436)
+++++...+|.|.+
T Consensus 273 ~~li~~~a~dii~~ 286 (404)
T PRK15072 273 KQLIEEQLIDYIRT 286 (404)
T ss_pred HHHHHcCCCCEEec
Confidence 99999877888875
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.091 Score=52.90 Aligned_cols=132 Identities=21% Similarity=0.197 Sum_probs=88.7
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. .-|-+.....+.=.++++.+++.+ .+||.+.+- +.+..+++++
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~G----------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~eai~l 91 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLG----------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAEAIEL 91 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHHHHHH
Confidence 66777777764 466999999883 345555556777777888777777 378888842 2346899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgV 313 (436)
++.+++.|+|+|.+..-.... .+..--++.++.|.+.+++||| +| |--.+++.+.++-+...+-||
T Consensus 92 ak~a~~~Gad~il~v~PyY~k---~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgi 163 (299)
T COG0329 92 AKHAEKLGADGILVVPPYYNK---PSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGV 163 (299)
T ss_pred HHHHHhcCCCEEEEeCCCCcC---CChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEE
Confidence 999999999999886543221 0012235667888888888865 55 545667777666543233333
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.19 Score=49.74 Aligned_cols=151 Identities=21% Similarity=0.235 Sum_probs=91.4
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCcccch---hhccChhh-hh------hhhhccCCCCCEEE---EecCC-CHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPMLHSR---IFTESEKY-RN------EEFATCKEDRPLFV---QFCAN-DPEILLNA 175 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Temisa~---~l~~~~~~-~~------~~~~~~~~e~pliv---QL~g~-d~e~~~~A 175 (436)
|.+.=|.++-+++.+.|.+++++.--... ++.....- .. ..+.. -..+|++| =+.+. ++++..+.
T Consensus 19 m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~r-g~~~~~vv~DmPf~sy~~~e~a~~n 97 (263)
T TIGR00222 19 AITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKR-GAPNCLIVTDLPFMSYATPEQALKN 97 (263)
T ss_pred EEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHh-hCCCceEEeCCCcCCCCCHHHHHHH
Confidence 77888999999999999998876511110 11111000 00 11111 22355554 12222 46666655
Q ss_pred H-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE-------EEecc-------CCCh-
Q 013813 176 A-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS-------CKIRV-------FPNL- 238 (436)
Q Consensus 176 A-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs-------VKiRl-------g~~~- 238 (436)
| ++++ .|+++|.|--| ..+.+.++.+. ..++||. ...|. |.+.
T Consensus 98 a~rl~~eaGa~aVkiEgg-------------------~~~~~~i~~l~-~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~ 157 (263)
T TIGR00222 98 AARVMQETGANAVKLEGG-------------------EWLVETVQMLT-ERGVPVVGHLGLTPQSVNILGGYKVQGKDEE 157 (263)
T ss_pred HHHHHHHhCCeEEEEcCc-------------------HhHHHHHHHHH-HCCCCEEEecCCCceeEeecCCeeecCCCHH
Confidence 5 5666 58999999732 22345555554 3367777 32332 2232
Q ss_pred --hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 239 --QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 239 --~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
+++++-|+.++++|++.|.+-+-. -+..++|.+.+++|+|+.|
T Consensus 158 ~a~~~i~~A~a~e~AGA~~ivlE~vp------------~~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 158 AAKKLLEDALALEEAGAQLLVLECVP------------VELAAKITEALAIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCc------------HHHHHHHHHhCCCCEEeec
Confidence 355677888999999999886442 2678899999999999877
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.023 Score=59.74 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=57.1
Q ss_pred HHHHHHcCccEEEeccCcccccC-CCCCccCHHHHHHHHhhC---------CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNAL---------RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~-~~~g~ad~~~i~~ik~~~---------~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+..+.+.|+|+|.+-.-...... ....+.-|+.++++++.+ ++||++.||| +.+++.++++ +|++||.
T Consensus 313 l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~-aGa~GVA 390 (437)
T PRK12290 313 LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQ-CGVSSLA 390 (437)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHH-cCCCEEE
Confidence 44566789999988654332211 122245678787776654 7999999999 5899999997 5999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+-|+++..++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999986555
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.18 Score=48.84 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLE 249 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le 249 (436)
...+|...++.|+|.||+- +-..|..|+ ..|..+.+|++.+.. ..|||.-+--.+ ........+....
T Consensus 9 ~~~EA~~a~~~gaDiID~K------~P~~GaLGA---~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~a 77 (235)
T PF04476_consen 9 NVEEAEEALAGGADIIDLK------NPAEGALGA---LFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGAA 77 (235)
T ss_pred CHHHHHHHHhCCCCEEEcc------CCCCCCCCC---CCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHHH
Confidence 3556666778899999984 233455554 357777777776543 379999853222 2222222334455
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHH----HHhhC-CCcEEEcc--CC-----CCHHHHHHHHHhcCcceeeeeh
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKA----VKNAL-RIPVLANG--NV-----RHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~----ik~~~-~iPVianG--GI-----~s~eda~~~l~~tGaDgVmIGR 317 (436)
..|+|+|-|----.. .. ....+.++. +++.- +..+++.+ +- -++-++.+.....|+++||+-+
T Consensus 78 ~~GvdyvKvGl~g~~---~~--~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 78 ATGVDYVKVGLFGCK---DY--DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDT 152 (235)
T ss_pred hcCCCEEEEecCCCC---CH--HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEec
Confidence 689999977311000 00 011233333 33321 34566555 21 1355666777777999999998
Q ss_pred HHhhCCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCC
Q 013813 318 SLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP 364 (436)
Q Consensus 318 gal~nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~ 364 (436)
+.=....+|.-+. .+.+.+|.+.+..++
T Consensus 153 a~Kdg~~L~d~~~-------------------~~~L~~Fv~~ar~~g 180 (235)
T PF04476_consen 153 ADKDGGSLFDHLS-------------------EEELAEFVAQARAHG 180 (235)
T ss_pred ccCCCCchhhcCC-------------------HHHHHHHHHHHHHcc
Confidence 7766666765332 235777777777665
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.017 Score=59.41 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhccc-------CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh
Q 013813 211 PLVKSLVEKLALNL-------NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 283 (436)
Q Consensus 211 ~~v~eIv~av~~~~-------~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~ 283 (436)
+.-.+.++.+++.. ...+.|-..++.. ++..+.++.|.++|+|.|+|..-.... ..-.+.++.+|+
T Consensus 73 e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~-~~~~er~~~L~~agvD~ivID~a~g~s------~~~~~~ik~ik~ 145 (352)
T PF00478_consen 73 EEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTR-DDDFERAEALVEAGVDVIVIDSAHGHS------EHVIDMIKKIKK 145 (352)
T ss_dssp HHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESS-TCHHHHHHHHHHTT-SEEEEE-SSTTS------HHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccccccceEEEEecCC-HHHHHHHHHHHHcCCCEEEccccCccH------HHHHHHHHHHHH
Confidence 44455555555421 2333344334433 344677888899999999995332211 122477889988
Q ss_pred hCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 284 ALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 284 ~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
... +||| .|+|-|.+.++.+++. |||+|-+|=|
T Consensus 146 ~~~~~~vi-aGNV~T~e~a~~L~~a-Gad~vkVGiG 179 (352)
T PF00478_consen 146 KFPDVPVI-AGNVVTYEGAKDLIDA-GADAVKVGIG 179 (352)
T ss_dssp HSTTSEEE-EEEE-SHHHHHHHHHT-T-SEEEESSS
T ss_pred hCCCceEE-ecccCCHHHHHHHHHc-CCCEEEEecc
Confidence 864 7777 6889999999998885 9999998844
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.27 Score=47.70 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=88.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCc--cEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV--PVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i--PVsVKiRl 234 (436)
+.|+=|.|+..+|+.+.+. .++.|+|.|-+|.=.. ..+.++++.+++. ++ -..+-+..
T Consensus 68 ~~~~DvHLMv~~P~~~i~~--~~~aGad~It~H~Ea~-----------------~~~~~~l~~Ik~~-g~~~kaGlalnP 127 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVAKA--CVAAGADIVTLQVEQT-----------------HDLALTIEWLAKQ-KTTVLIGLCLCP 127 (228)
T ss_pred CCCEEEEeccCCHHHHHHH--HHHhCCCEEEEcccCc-----------------ccHHHHHHHHHHC-CCCceEEEEECC
Confidence 6788999999999998754 3567999999996310 1245666777654 45 33444334
Q ss_pred CCChhhHHHHHHHHHHcCccEEEe---ccCcccccCCCCCccCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHH
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~ 306 (436)
+...+....++. . +|.|.| ..+...|... +.-++-|+++++. .++.|-.-|||+ .+.+.++.+
T Consensus 128 ~Tp~~~i~~~l~---~--vD~VLiMtV~PGfgGQ~f~---~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~ 198 (228)
T PRK08091 128 ETPISLLEPYLD---Q--IDLIQILTLDPRTGTKAPS---DLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQ 198 (228)
T ss_pred CCCHHHHHHHHh---h--cCEEEEEEECCCCCCcccc---HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHH
Confidence 434444333332 2 677755 3333332211 2234555555543 246789999998 688888887
Q ss_pred hcCcceeeeehHHhhCCc
Q 013813 307 ETGCEGVLSAESLLENPA 324 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~ 324 (436)
. |||.+++|+++..++.
T Consensus 199 a-GaD~~V~GSalF~~~d 215 (228)
T PRK08091 199 H-QIDWVVSGSALFSQGE 215 (228)
T ss_pred C-CCCEEEEChhhhCCCC
Confidence 6 9999999999877665
|
|
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.2 Score=51.45 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=93.5
Q ss_pred CCEEEEecCCCHHHHH-HHHHHHcCC-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEec
Q 013813 158 RPLFVQFCANDPEILL-NAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~~~-~AA~~v~~g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiR 233 (436)
.|+...+...+++++. ++.+.++.| |..+-+-.|- .+++.-.+.|+++++.++ +.+.+-..
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN 196 (365)
T cd03318 132 LPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVN 196 (365)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 3454445445555444 445666778 9999887541 123444566677777663 45555555
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.+++.++++.+++.|+.+| ++... .-+++..+++++..++||.+.=.+.+.+++.++++...+|.+
T Consensus 197 ~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~ 266 (365)
T cd03318 197 QAWDESTAIRALPRLEAAGVELI-------EQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVF 266 (365)
T ss_pred CCCCHHHHHHHHHHHHhcCccee-------eCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeE
Confidence 57888999999999999987665 22111 236888899999999999988789999999999998678887
Q ss_pred ee
Q 013813 314 LS 315 (436)
Q Consensus 314 mI 315 (436)
++
T Consensus 267 ~~ 268 (365)
T cd03318 267 SL 268 (365)
T ss_pred EE
Confidence 54
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.14 Score=51.14 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHhcccCccEEEEecc--CC-C--------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHH
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRV--FP-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 276 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRl--g~-~--------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~ 276 (436)
++.+..+++++.... .+++|-.=+.. |. + ..++.+..+.+++.|+|.+.|.-.|..+.|.. ...|++
T Consensus 112 eNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~-p~l~~~ 189 (283)
T PRK07998 112 ENIAFTKEAVDFAKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDI-PRIDIP 189 (283)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCC-CCcCHH
Confidence 355666677766553 57776544321 11 0 12445555666789999997754444443332 347899
Q ss_pred HHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHHh
Q 013813 277 AIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 277 ~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRgal 320 (436)
.+++|++.+++|++.-||=..+ ++++++++. |+..|=|++.+.
T Consensus 190 ~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~Tel~ 233 (283)
T PRK07998 190 LLKRIAEVSPVPLVIHGGSGIPPEILRSFVNY-KVAKVNIASDLR 233 (283)
T ss_pred HHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHc-CCcEEEECHHHH
Confidence 9999999999999988876655 667778875 999999998753
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.052 Score=56.10 Aligned_cols=43 Identities=26% Similarity=0.521 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++||++ .||.+.+|++.+.+. |+|+|.+.
T Consensus 209 ~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~~~-GvD~I~vs 251 (364)
T PLN02535 209 SLSWKDIEWLRSITNLPILI-KGVLTREDAIKAVEV-GVAGIIVS 251 (364)
T ss_pred CCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHHhc-CCCEEEEe
Confidence 46899999999999999775 567899999998886 99999774
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.17 Score=50.94 Aligned_cols=208 Identities=12% Similarity=0.093 Sum_probs=116.9
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEe-Cc-ccch--hhccC-----hhhhhh-hhhccCCCCCEEEEe-
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYT-PM-LHSR--IFTES-----EKYRNE-EFATCKEDRPLFVQF- 164 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~T-em-isa~--~l~~~-----~~~~~~-~~~~~~~e~plivQL- 164 (436)
|-+.+-.+..+++| ++-|..=-+++.+.|-+.+|| -. +++. ++-.. ...... .--....+.|+++=+
T Consensus 8 ~r~l~~~~~~l~~p--~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d 85 (294)
T TIGR02319 8 FRELMNAPEILVVP--SAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDAD 85 (294)
T ss_pred HHHHhcCCCcEEee--cCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECC
Confidence 44444444455544 455554446778889988885 32 2211 22111 000000 000223468999876
Q ss_pred --cCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc----CC
Q 013813 165 --CANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV----FP 236 (436)
Q Consensus 165 --~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl----g~ 236 (436)
+|+.++ ..+.++.+ +.|+.+|.|--..- ..+.|.+++.-+-..+...+=|++++++. +.++.|=-|. ..
T Consensus 86 tGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~--pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~ 162 (294)
T TIGR02319 86 AGYGNAMS-VWRATREFERVGIVGYHLEDQVN--PKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESF 162 (294)
T ss_pred CCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC--ccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccC
Confidence 345555 66777654 56999999975421 11223334432333444444444444432 3456665555 24
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcE---EEccCCCCHHHHHHHHHhcCccee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV---LANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPV---ianGGI~s~eda~~~l~~tGaDgV 313 (436)
..+++++=++...++|+|.|-+++-. +.+.++++.+.++.|+ +..||-.-.-.+.++-+ -|+..|
T Consensus 163 g~deaI~Ra~aY~eAGAD~ifi~~~~-----------~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~-lG~~~v 230 (294)
T TIGR02319 163 GLDEAIRRSREYVAAGADCIFLEAML-----------DVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELES-IGYNLA 230 (294)
T ss_pred CHHHHHHHHHHHHHhCCCEEEecCCC-----------CHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHH-cCCcEE
Confidence 56788888999999999999998631 2466888888888787 34443322223444444 499999
Q ss_pred eeehHHh
Q 013813 314 LSAESLL 320 (436)
Q Consensus 314 mIGRgal 320 (436)
..|-.++
T Consensus 231 ~~~~~~~ 237 (294)
T TIGR02319 231 IYPLSGW 237 (294)
T ss_pred EEcHHHH
Confidence 9985543
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.066 Score=52.27 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=79.5
Q ss_pred HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcCcc
Q 013813 177 RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG~d 254 (436)
++++ .|||.|=+--.+-.. .. |+-...+-..+.+.+.++.|...+.+||++.+..|. +.++..+.++.+.++|++
T Consensus 23 ~~~e~~G~~ai~~s~~~~~~--s~-G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 23 RLAERAGFKAIYTSGAGVAA--SL-GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHHHHcCCCEEEeccHHHHH--hc-CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 4444 388888775321111 11 233333445677888888898889999999998865 445677788999999999
Q ss_pred EEEeccCcccccCCCCC---ccC----HHHHHHHHhhC----CCcEEEccC---C--CCHHHHHHHH---HhcCcceeee
Q 013813 255 LLAVHGRTRDEKDGKKF---RAD----WNAIKAVKNAL----RIPVLANGN---V--RHMEDVQKCL---EETGCEGVLS 315 (436)
Q Consensus 255 ~I~VHgRt~~~~~~~~g---~ad----~~~i~~ik~~~----~iPVianGG---I--~s~eda~~~l---~~tGaDgVmI 315 (436)
+|.+-+.....+.+..+ ... .+.|+.+++.. +++|++-=+ + .+.+++.+.. .+.|||+|++
T Consensus 100 gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v 179 (243)
T cd00377 100 GIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFV 179 (243)
T ss_pred EEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 99994443221111100 111 23333344332 455555511 2 3455554332 2349999998
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
-
T Consensus 180 ~ 180 (243)
T cd00377 180 E 180 (243)
T ss_pred C
Confidence 5
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.061 Score=52.44 Aligned_cols=144 Identities=20% Similarity=0.227 Sum_probs=91.1
Q ss_pred CCCCEEEEe---cCCCHHHHHHHHHHH-cCCCcEEEEecC-CCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEE
Q 013813 156 EDRPLFVQF---CANDPEILLNAARRV-EPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVS 229 (436)
Q Consensus 156 ~e~plivQL---~g~d~e~~~~AA~~v-~~g~D~IdLN~G-CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVs 229 (436)
.+.|+++=+ +|+++..+.+.++.+ +.|+.+|.|.-. |-. -|..++ .++...+=|++++++. +..+.
T Consensus 68 ~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~-------~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~ 139 (238)
T PF13714_consen 68 VSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGH-------GGKQLV-SPEEMVAKIRAAVDARRDPDFV 139 (238)
T ss_dssp SSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTT-------STT-B---HHHHHHHHHHHHHHHSSTTSE
T ss_pred hcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCC-------CCCcee-CHHHHHHHHHHHHHhccCCeEE
Confidence 368999887 366699999999765 569999999876 431 234455 4554444444444332 22244
Q ss_pred EEeccC------CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHH
Q 013813 230 CKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 230 VKiRlg------~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~ 303 (436)
|=-|.. ...+++++=++...++|+|.|-+++... -+.++++.+.++.|+..+.+ ...-++++
T Consensus 140 I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~-----------~~~i~~~~~~~~~Pl~v~~~-~~~~~~~e 207 (238)
T PF13714_consen 140 IIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQS-----------EEEIERIVKAVDGPLNVNPG-PGTLSAEE 207 (238)
T ss_dssp EEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSS-----------HHHHHHHHHHHSSEEEEETT-SSSS-HHH
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC-----------HHHHHHHHHhcCCCEEEEcC-CCCCCHHH
Confidence 444442 2456778888889999999999987632 24578888888999877664 22245555
Q ss_pred HHHhcCcceeeeehHHh
Q 013813 304 CLEETGCEGVLSAESLL 320 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal 320 (436)
+-+. |+..|.+|-.++
T Consensus 208 L~~l-Gv~~v~~~~~~~ 223 (238)
T PF13714_consen 208 LAEL-GVKRVSYGNSLL 223 (238)
T ss_dssp HHHT-TESEEEETSHHH
T ss_pred HHHC-CCcEEEEcHHHH
Confidence 5554 999999886543
|
... |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.062 Score=54.99 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=75.8
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-ccCcccc-cCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDE-KDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-HgRt~~~-~~~~~g~ad~~~i~ 279 (436)
-||..+++.+++.++- .+++||.+|--...+.++....++.+...|-..+++ |..++.- .+. ....|+..+.
T Consensus 182 IgAr~~~N~~LL~~va-----~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~-~~~ldl~ai~ 255 (335)
T PRK08673 182 IGARNMQNFDLLKEVG-----KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETAT-RNTLDLSAVP 255 (335)
T ss_pred ECcccccCHHHHHHHH-----cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcC-hhhhhHHHHH
Confidence 4788889988877664 458999999666667888888888999999866554 5323221 111 2257899999
Q ss_pred HHHhhCCCcEEEc----cCCCC--HHHHHHHHHhcCcceeeeeh
Q 013813 280 AVKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 280 ~ik~~~~iPVian----GGI~s--~eda~~~l~~tGaDgVmIGR 317 (436)
.+++..++||++. +|.+. +..+...+. .||||+||=.
T Consensus 256 ~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA-~GAdGliIE~ 298 (335)
T PRK08673 256 VIKKLTHLPVIVDPSHATGKRDLVEPLALAAVA-AGADGLIVEV 298 (335)
T ss_pred HHHHhcCCCEEEeCCCCCccccchHHHHHHHHH-hCCCEEEEEe
Confidence 9999889999774 33321 134455555 4999999873
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.11 Score=52.51 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=84.4
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. +..|+++|=+| |..|-+..-..+.-.++++.+.+.+ ++||.+-+-. .+.++++++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~~ 95 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTM----------GTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIAR 95 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----------cccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHHH
Confidence 56677777754 46799999998 3456666666777777877776655 4899988432 456899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEE------ccCCCCHHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLA------NGNVRHMEDVQKCLE 306 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVia------nGGI~s~eda~~~l~ 306 (436)
++.+++.|+|++.+..-... ..+...-+++.+.|.+.+ ++||+. .|---+++.+.++.+
T Consensus 96 a~~A~~~Gad~vlv~~P~y~---~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 96 TRALLDLGADGTMLGRPMWL---PLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred HHHHHHhCCCEEEECCCcCC---CCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 99999999999988643211 011122356677888887 588763 233445666666653
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.055 Score=56.32 Aligned_cols=43 Identities=19% Similarity=0.561 Sum_probs=38.4
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++||+.- ||.+.+|++.+++. |||+|.|.
T Consensus 239 ~~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~~~-G~d~I~vs 281 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLK-GILHPDDARRAVEA-GVDGVVVS 281 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHHHC-CCCEEEEc
Confidence 468999999999999998876 77899999999986 99999976
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.14 Score=46.97 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC---ChhhHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP---NLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~---~~~d~~~ 243 (436)
|.+.+.+.++.+ +.|+++|.++. +.++.+.+.+... ++||.+++-.+. ..+++.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~~~~~~~~~ 69 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGLTTTEVKVA 69 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCCCcHHHHHH
Confidence 788888888755 56899999993 3333343433221 489999965432 1578889
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh--CCCcEEE-c--cCCCCHHHHHHH---HHhcCcceeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLA-N--GNVRHMEDVQKC---LEETGCEGVLS 315 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVia-n--GGI~s~eda~~~---l~~tGaDgVmI 315 (436)
.++.+.++|+|++.++.-..... ......-.+.++++++. .++||+. | +...+.+...++ +...|+|+|-.
T Consensus 70 ~a~~a~~~Gad~i~v~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 70 EVEEAIDLGADEIDVVINIGSLK-EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HHHHHHHcCCCEEEEeccHHHHh-CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 99999999999998864321100 00001225667788887 4888763 2 222256666654 34468999866
Q ss_pred ehH
Q 013813 316 AES 318 (436)
Q Consensus 316 GRg 318 (436)
..+
T Consensus 149 ~~~ 151 (201)
T cd00945 149 STG 151 (201)
T ss_pred CCC
Confidence 544
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.16 Score=50.05 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=89.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV 230 (436)
...++.++|...|...+.+-.+.++. |+|.+-+-. | +|+- .+| |+. ++++++ ++|+.|
T Consensus 18 ~~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi-----tfG------p~~----i~~i~~--~~p~Dv 80 (254)
T PRK14057 18 ASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF-----TVG------PWA----VGQLPQ--TFIKDV 80 (254)
T ss_pred cCCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc-----ccC------HHH----HHHhcc--CCCeeE
Confidence 35789999999999999999988865 788765553 2 3331 122 333 344443 345444
Q ss_pred EeccCCChhhHHHHHHHHHHcCccEEEeccCccc------------c----------c----------------------
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------E----------K---------------------- 266 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~------------~----------~---------------------- 266 (436)
=+= ..+...+++.+.++|+|.|++|.-... + +
T Consensus 81 HLM----V~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD 156 (254)
T PRK14057 81 HLM----VADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVE 156 (254)
T ss_pred Eee----eCCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCC
Confidence 321 134556677777788888887642100 0 0
Q ss_pred --------CCCCCc----cCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 267 --------DGKKFR----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 267 --------~~~~g~----ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.++.|. .-++-|+++++. .++.|-.-|||+ .+.+.++.+. |||.+++|+++..++.
T Consensus 157 ~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~a-Gad~~V~GSalF~~~d 229 (254)
T PRK14057 157 VIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQ-GIDRVVSGSALFRDDR 229 (254)
T ss_pred EEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHC-CCCEEEEChHhhCCCC
Confidence 111111 112234444432 246789999997 5788888876 9999999998866544
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.29 Score=49.13 Aligned_cols=161 Identities=16% Similarity=0.267 Sum_probs=92.6
Q ss_pred CCCEEEEecCC------CHHHHHHHHHHHcC--CCc-EEEEecC-CCc----hhhhcCccccccc--------CChHHHH
Q 013813 157 DRPLFVQFCAN------DPEILLNAARRVEP--YCD-YVDINLG-CPQ----RIARRGNYGAFLM--------DNLPLVK 214 (436)
Q Consensus 157 e~plivQL~g~------d~e~~~~AA~~v~~--g~D-~IdLN~G-CP~----~~~~~~~~Gs~Ll--------~~p~~v~ 214 (436)
..|+|+|+.-. ..+.+..+++.+.. ++. -|-||+. |.. ..+.+.||.|-+. .+.+..+
T Consensus 42 ~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~ 121 (288)
T TIGR00167 42 KSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTK 121 (288)
T ss_pred CCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHH
Confidence 56888887543 24445555543322 122 2556652 332 1223344544333 3445566
Q ss_pred HHHHHHhcccCccEEEEecc-C--CC----------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCc-cCHHHHHH
Q 013813 215 SLVEKLALNLNVPVSCKIRV-F--PN----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKA 280 (436)
Q Consensus 215 eIv~av~~~~~iPVsVKiRl-g--~~----------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~-ad~~~i~~ 280 (436)
++++..+ ..++.|-.=+-. | .+ ..++.+..+.+++.|+|.+.|.-.|..+.+..... .||+.+++
T Consensus 122 ~vv~~Ah-~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~ 200 (288)
T TIGR00167 122 KVVERAH-KMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEE 200 (288)
T ss_pred HHHHHHH-HcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHH
Confidence 6666543 235555444321 1 00 11334444445678999997744444433322223 79999999
Q ss_pred HHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 281 VKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 281 ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
|++.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 201 I~~~v~vPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l 239 (288)
T TIGR00167 201 IQKYVNLPLVLHGGSGIPDEEIKKAISL-GVVKVNIDTEL 239 (288)
T ss_pred HHHHhCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEcChHH
Confidence 999999999999986666 577778875 88888777655
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.024 Score=54.20 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=94.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 156 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
++++++.-+=.-|.-.+. ++. .+.|+|.+-+-+-- +..-+...++..+ ..++-+-+-+=-
T Consensus 55 pd~~IvAD~Kt~D~G~~e--~~ma~~aGAd~~tV~g~A----------------~~~TI~~~i~~A~-~~~~~v~iDl~~ 115 (217)
T COG0269 55 PDKIIVADLKTADAGAIE--ARMAFEAGADWVTVLGAA----------------DDATIKKAIKVAK-EYGKEVQIDLIG 115 (217)
T ss_pred CCCeEEeeeeecchhHHH--HHHHHHcCCCEEEEEecC----------------CHHHHHHHHHHHH-HcCCeEEEEeec
Confidence 677777777666654432 222 45688887776322 3344555555544 345555555422
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.+ +..+-++.++++|++.+.+|-..-.|..+. ...|+.+..+++..+ ..|-..|||. ++++..+... |++.
T Consensus 116 ~~---~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~--~~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~~~-~~~i 188 (217)
T COG0269 116 VW---DPEQRAKWLKELGVDQVILHRGRDAQAAGK--SWGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFKGI-GADI 188 (217)
T ss_pred CC---CHHHHHHHHHHhCCCEEEEEecccHhhcCC--CccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHhcC-CCCE
Confidence 23 444557778889999999995444443332 233677888888765 7999999996 8999998886 8999
Q ss_pred eeeehHHhhCCc
Q 013813 313 VLSAESLLENPA 324 (436)
Q Consensus 313 VmIGRgal~nP~ 324 (436)
|.+||++-.-.+
T Consensus 189 vIvGraIt~a~d 200 (217)
T COG0269 189 VIVGRAITGAKD 200 (217)
T ss_pred EEECchhcCCCC
Confidence 999998865443
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.1 Score=51.74 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=87.9
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+++|=+|- ..|-+..-..+.-.++++.+.+.+ ++||.+-+.. .+.++++++
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~G----------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~~ 87 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCG----------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIEL 87 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHHH
Confidence 56667777754 456999999982 244444555666666777666655 4788877432 366899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE------ccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA------NGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia------nGGI~s~eda~~~l~~tGaDgVm 314 (436)
++.++++|+|+|.+..-... ..+...-+++.+.|.+.+++||+. .|-.-+++.+.++.+...+.|+=
T Consensus 88 a~~a~~~G~d~v~~~~P~~~---~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK 160 (284)
T cd00950 88 TKRAEKAGADAALVVTPYYN---KPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIK 160 (284)
T ss_pred HHHHHHcCCCEEEEcccccC---CCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEE
Confidence 99999999999988643211 111122356678888888899862 46567788888877543444443
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.14 Score=51.31 Aligned_cols=133 Identities=16% Similarity=0.127 Sum_probs=88.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++ |..|-+..-..+.-.++++.+.+.+ .+||.+-+ +.+..++++.
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~~~t~~ai~~ 91 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAA----------GGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--GGNTSDAIEI 91 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC----------CCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--CccHHHHHHH
Confidence 56667777754 46699999988 3345555556666667777665554 47899886 3467899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec--cCCCCHHHHHHHHH-hcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN--GNVRHMEDVQKCLE-ETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an--GGI~s~eda~~~l~-~tGaDgVmI 315 (436)
++.++++|+|++.+..-.... .+...-.++.+.|.+.+++||+ +| |---+++.+.++.+ ..++.||=-
T Consensus 92 a~~a~~~Gadav~~~pP~y~~---~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKd 163 (296)
T TIGR03249 92 ARLAEKAGADGYLLLPPYLIN---GEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKD 163 (296)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEe
Confidence 999999999999886432211 1111225667888888889965 43 32347888888775 334444443
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.069 Score=54.94 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=74.5
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-ccCcccc--cCCCCCccCHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDE--KDGKKFRADWNAIK 279 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-HgRt~~~--~~~~~g~ad~~~i~ 279 (436)
||..+++.+++.++ . .+++||.+|--...+.++....++.+.+.|...|++ |..++.- .|. ....||..+.
T Consensus 191 ga~~~~n~~LL~~v----a-~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~-~~~~dl~ai~ 264 (352)
T PRK13396 191 GARNMQNFSLLKKV----G-AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYT-RNTLDLSVIP 264 (352)
T ss_pred CcccccCHHHHHHH----H-ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCC-CCCcCHHHHH
Confidence 67788887765444 3 458999999766668889888899999999865654 5433221 122 2368999999
Q ss_pred HHHhhCCCcEEEcc----CCCC--HHHHHHHHHhcCcceeeee
Q 013813 280 AVKNALRIPVLANG----NVRH--MEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 280 ~ik~~~~iPVianG----GI~s--~eda~~~l~~tGaDgVmIG 316 (436)
.+++..++|||+.- |.++ ..-+...+. .||||+||=
T Consensus 265 ~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva-~GAdGliIE 306 (352)
T PRK13396 265 VLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIA-AGTDSLMIE 306 (352)
T ss_pred HHHHhhCCCEEECCcccCCcHHHHHHHHHHHHh-hCCCeEEEE
Confidence 99998899998763 2222 233344454 499999986
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.28 Score=47.73 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLE 249 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le 249 (436)
...+|...++.|+|.||+- +-..|..| .+.|..+++|++.+... .|||..+--.+ .......-+..+.
T Consensus 9 ~~eEA~~Al~~GaDiIDvK------~P~~GaLG---A~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~a 77 (238)
T PRK02227 9 NLEEALEALAGGADIIDVK------NPKEGSLG---ANFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGAA 77 (238)
T ss_pred CHHHHHHHHhcCCCEEEcc------CCCCCCCC---CCCHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHHH
Confidence 3556666678899999984 23344444 34578888888887644 69999843212 2233333445566
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHHH----Hhh-CCCcEEEcc--C---CC--CHHHHHHHHHhcCcceeeeeh
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV----KNA-LRIPVLANG--N---VR--HMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~i----k~~-~~iPVianG--G---I~--s~eda~~~l~~tGaDgVmIGR 317 (436)
..|+|+|-|- ..... .. ...++.++.+ +.. .+..|++.+ + +. ++.++.......|++++|+=+
T Consensus 78 ~~GvDyVKvG-l~~~~--~~--~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDT 152 (238)
T PRK02227 78 ATGADYVKVG-LYGGK--TA--EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDT 152 (238)
T ss_pred hhCCCEEEEc-CCCCC--cH--HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEec
Confidence 7999999772 21110 00 1112333333 222 245666555 1 11 456677777777999999976
Q ss_pred HHhhCCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCC
Q 013813 318 SLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP 364 (436)
Q Consensus 318 gal~nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~ 364 (436)
+.=..-.+|.-+. .+.+.+|.+.+..++
T Consensus 153 a~Kdg~~Lfd~l~-------------------~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 153 AIKDGKSLFDHMD-------------------EEELAEFVAEARSHG 180 (238)
T ss_pred ccCCCcchHhhCC-------------------HHHHHHHHHHHHHcc
Confidence 5544444443221 235778888777766
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.16 Score=51.07 Aligned_cols=123 Identities=16% Similarity=0.087 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++.+ ..|+|+|=+|. ..|-+..-..+.=.++++.+.+.+ ++||.+-+- .+..+++++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~G----------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~~i~~ 93 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAG----------GTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQAIEY 93 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHHHHHH
Confidence 556666666654 56999999883 345555556666667777666555 589998863 377899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-cC-CCCHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-GN-VRHMEDVQKCL 305 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-GG-I~s~eda~~~l 305 (436)
++.++++|+|++.+..-.... .+...-.++.+.+.+.+++||+ +| .| --+++.+.++.
T Consensus 94 ~~~a~~~Gadav~~~pP~y~~---~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 94 AQAAERAGADGILLLPPYLTE---APQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999885432110 0001224667788888889965 33 22 33677777766
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.054 Score=55.14 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHc--CccEEEe---ccCcccccCCCCCccCHHHHHHHHhh
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA--GCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA 284 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~a--G~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~ 284 (436)
++.-.+.++.+......-+.| ..|.. ++..+.++.|.++ |+|.|+| ||-.. .-.+.|+.+++.
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~-~~d~er~~~L~~a~~~~d~iviD~AhGhs~---------~~i~~ik~ir~~ 147 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSS-DNDLEKMTSILEAVPQLKFICLDVANGYSE---------HFVEFVKLVREA 147 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHH---------HHHHHHHHHHhh
Confidence 444444454443333333333 23333 3334566677776 5999988 33321 235788999988
Q ss_pred CCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 285 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 285 ~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..-+.+..|+|-|+++++.+++. |||+|.+|
T Consensus 148 ~p~~~viaGNV~T~e~a~~Li~a-GAD~ikVg 178 (343)
T TIGR01305 148 FPEHTIMAGNVVTGEMVEELILS-GADIVKVG 178 (343)
T ss_pred CCCCeEEEecccCHHHHHHHHHc-CCCEEEEc
Confidence 76678889999999999999986 99999877
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.11 Score=50.31 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=47.5
Q ss_pred CEEEEecCCCHHHHHHHHHHHc---CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEecc
Q 013813 159 PLFVQFCANDPEILLNAARRVE---PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV 234 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~---~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRl 234 (436)
+|++-+ |...+.++.+.++ ...+.|+++.+.=. .+| .++++++++. ..+++.+| +
T Consensus 4 ~lilAl---D~~~~~~~l~~~~~~~~~~~~ikvg~~~f~------~~G----------~~~i~~l~~~~~~i~~D~K--l 62 (230)
T PRK00230 4 RLIVAL---DFPSKEEALAFLDQLDPAVLFVKVGMELFT------AGG----------PQFVRELKQRGFKVFLDLK--L 62 (230)
T ss_pred CeEEEc---CCCCHHHHHHHHHhcCCcccEEEEcHHHHH------hcC----------HHHHHHHHhcCCCEEEEee--h
Confidence 455555 4444455555554 34678888853211 122 2446666654 45666677 4
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccC
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgR 261 (436)
.+-.......++.+.++|+++++||+-
T Consensus 63 ~Di~~t~~~~i~~~~~~gad~itvH~~ 89 (230)
T PRK00230 63 HDIPNTVAKAVRALAKLGVDMVNVHAS 89 (230)
T ss_pred hhccccHHHHHHHHHHcCCCEEEEccc
Confidence 322223445677788999999999963
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.46 Score=48.05 Aligned_cols=148 Identities=19% Similarity=0.290 Sum_probs=81.2
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHHHHcCCC--cEEEEecC-CCc----hhhhcCccccccc--------CChHHHHH
Q 013813 156 EDRPLFVQFCAND-----PEILLNAARRVEPYC--DYVDINLG-CPQ----RIARRGNYGAFLM--------DNLPLVKS 215 (436)
Q Consensus 156 ~e~plivQL~g~d-----~e~~~~AA~~v~~g~--D~IdLN~G-CP~----~~~~~~~~Gs~Ll--------~~p~~v~e 215 (436)
...|+|+|+.-+. .+.+...++.+...+ --|-||+. |.. ..+.+.||.|-+. .+-+..++
T Consensus 40 ~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~ 119 (307)
T PRK05835 40 ENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSK 119 (307)
T ss_pred HCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Confidence 3578888875432 333444444332222 23555542 222 1222344544333 34455566
Q ss_pred HHHHHhcccCccEEEEec-cC-C-C----------hhhHHHHHHHHHHcCccEEEeccCcccccCC--CCCccCHHHHHH
Q 013813 216 LVEKLALNLNVPVSCKIR-VF-P-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKA 280 (436)
Q Consensus 216 Iv~av~~~~~iPVsVKiR-lg-~-~----------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~--~~g~ad~~~i~~ 280 (436)
+++..+ ..++.|-.=+- ++ . + ..++.+..+.+++.|+|.+.|.-.|..+.+. .....||+.+++
T Consensus 120 vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~ 198 (307)
T PRK05835 120 VVKMAH-NAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQE 198 (307)
T ss_pred HHHHHH-HcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHH
Confidence 666544 33555544331 11 0 0 1234444555668899999875444444333 222579999999
Q ss_pred HHhhCCCcEEEccCCCCHHHHHHH
Q 013813 281 VKNALRIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 281 ik~~~~iPVianGGI~s~eda~~~ 304 (436)
|++.+++|++.-||=..+++..+.
T Consensus 199 I~~~~~iPLVLHGgSGip~e~~~~ 222 (307)
T PRK05835 199 VKRLTNIPLVLHGASAIPDDVRKS 222 (307)
T ss_pred HHHHhCCCEEEeCCCCCchHHhhh
Confidence 999999999999988877754433
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.12 Score=51.03 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=78.4
Q ss_pred CCEEEEecCCCHH--------HHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccE
Q 013813 158 RPLFVQFCANDPE--------ILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPV 228 (436)
Q Consensus 158 ~plivQL~g~d~e--------~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPV 228 (436)
.|+|..+-..+|. +..+.|+.. +.|+++|-++. ....||+. .+.++++++.+++||
T Consensus 50 ~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt-------e~~~f~g~--------~~~l~~v~~~v~iPv 114 (260)
T PRK00278 50 PAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT-------DERFFQGS--------LEYLRAARAAVSLPV 114 (260)
T ss_pred CeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec-------ccccCCCC--------HHHHHHHHHhcCCCE
Confidence 5566666443332 235555544 45899996652 22334444 355666777789999
Q ss_pred EEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 229 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 229 sVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
.+|-- .-+.. -+..+.++|+|.|++.+.... ...+ +++... +..++.+++ .+.+.++++++.+.
T Consensus 115 l~kdf----i~~~~-qi~~a~~~GAD~VlLi~~~l~-------~~~l~~li~~a-~~lGl~~lv--evh~~~E~~~A~~~ 179 (260)
T PRK00278 115 LRKDF----IIDPY-QIYEARAAGADAILLIVAALD-------DEQLKELLDYA-HSLGLDVLV--EVHDEEELERALKL 179 (260)
T ss_pred Eeeee----cCCHH-HHHHHHHcCCCEEEEEeccCC-------HHHHHHHHHHH-HHcCCeEEE--EeCCHHHHHHHHHc
Confidence 98731 12333 366778999999999877632 1122 233333 334544443 68899999988875
Q ss_pred cCcceeeee
Q 013813 308 TGCEGVLSA 316 (436)
Q Consensus 308 tGaDgVmIG 316 (436)
|+|.|.++
T Consensus 180 -gadiIgin 187 (260)
T PRK00278 180 -GAPLIGIN 187 (260)
T ss_pred -CCCEEEEC
Confidence 99988764
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=49.50 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=89.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchh-----hhc----CcccccccCChHHHHHHHHH-------
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRI-----ARR----GNYGAFLMDNLPLVKSLVEK------- 219 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~-----~~~----~~~Gs~Ll~~p~~v~eIv~a------- 219 (436)
..+++.=|.+.++++..+.++.+.+ |++.||+-+--|... .++ -.-|+...-+++.+...+++
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 4678888999999999999987755 799999997655421 010 11233333334443333322
Q ss_pred ----------HhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCc
Q 013813 220 ----------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 220 ----------v~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iP 288 (436)
.++ .++|+.- ...+.-+ +..+.++|++.|.+..-... + ...+++.++.-. +++
T Consensus 94 P~~~~~vi~~a~~-~~i~~iP------G~~TptE-i~~a~~~Ga~~vKlFPa~~~------g--g~~~lk~l~~p~p~~~ 157 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLIP------GVSTPSE-LMLGMELGLRTFKFFPAEAS------G--GVKMLKALAGPFPDVR 157 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEeC------CCCCHHH-HHHHHHCCCCEEEEccchhc------c--CHHHHHHHhccCCCCe
Confidence 211 1222211 1122223 45577888888888542110 1 246788887654 799
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
++..|||. .+.+.++++. | +.+.+|.+.|.+...
T Consensus 158 ~~ptGGV~-~~ni~~~l~a-g-~v~~vggs~L~~~~~ 191 (212)
T PRK05718 158 FCPTGGIS-PANYRDYLAL-P-NVLCIGGSWMVPKDA 191 (212)
T ss_pred EEEeCCCC-HHHHHHHHhC-C-CEEEEEChHhCCcch
Confidence 99999997 5999999987 6 445555555555444
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.2 Score=49.95 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=81.2
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+++|=++. ..|-+..-..+.-.++++.+.+.+ ++||.+-+- .+..+++++
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~~t~~~i~~ 86 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAG----------GTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--YGTATAIAY 86 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--CCHHHHHHH
Confidence 55666666654 456899999883 344444445555566666655544 589999864 377899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc---cCCCCHHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GNVRHMEDVQKCLE 306 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian---GGI~s~eda~~~l~ 306 (436)
++.++++|+|++.+..-.... .+...-.++++.|.+.+++||+.- |---+++.+.++.+
T Consensus 87 a~~a~~~Gad~v~~~pP~y~~---~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 87 AQAAEKAGADGILLLPPYLTE---APQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999885322110 000112466778888888997632 43346777777765
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.08 Score=54.55 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=37.6
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
..+|+.++.+++..++||+.-| |.+++|++.+.+. |+|+|.+
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~~~-G~d~I~v 248 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKG-IQSPEDADVAINA-GADGIWV 248 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEec-CCCHHHHHHHHHc-CCCEEEE
Confidence 3589999999999999999775 8999999998885 9999988
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.087 Score=51.80 Aligned_cols=135 Identities=20% Similarity=0.274 Sum_probs=90.8
Q ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 154 ~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
...+.|++.-++ |+.++..+++. +|.|. -|+..|+|.+++.++ ...++||..|=-
T Consensus 106 ~~~Gl~vvtEvm--~~~~~e~~~~y----~Dilq--------------vGARNMQNF~LLke~-----G~~~kPvLLKRg 160 (286)
T COG2876 106 DETGLPVVTEVM--DVRDVEAAAEY----ADILQ--------------VGARNMQNFALLKEV-----GRQNKPVLLKRG 160 (286)
T ss_pred HHcCCeeEEEec--CHHHHHHHHhh----hhHHH--------------hcccchhhhHHHHHh-----cccCCCeEEecC
Confidence 356778888776 34444444432 23332 366678888776654 355899999977
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccC---cccccCCCCCccCHHHHHHHHhhCCCcEEEcc----CCCCHH--HHHHH
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRHME--DVQKC 304 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgR---t~~~~~~~~g~ad~~~i~~ik~~~~iPVianG----GI~s~e--da~~~ 304 (436)
++-++++.+.-|+.+...|-..|++--| |-+.... ...|+..|..+|+.+++|||++= |=+++- -+...
T Consensus 161 ~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TR--ntLDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA 238 (286)
T COG2876 161 LSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATR--NTLDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAA 238 (286)
T ss_pred ccccHHHHHHHHHHHHhCCCCcEEEEeccccccccccc--ceechHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHH
Confidence 7778899999999999999998888543 3332112 25789999999999999999753 222211 12333
Q ss_pred HHhcCcceeeee
Q 013813 305 LEETGCEGVLSA 316 (436)
Q Consensus 305 l~~tGaDgVmIG 316 (436)
+. .||||+|+=
T Consensus 239 ~A-aGAdglmiE 249 (286)
T COG2876 239 IA-AGADGLMIE 249 (286)
T ss_pred Hh-ccCCeeEEE
Confidence 44 499999985
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.75 Score=45.66 Aligned_cols=187 Identities=15% Similarity=0.107 Sum_probs=105.7
Q ss_pred CCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhh----hhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCc
Q 013813 113 NSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRN----EEFATCKEDRPLFVQFCANDPEILLNAARRVEP-YCD 184 (436)
Q Consensus 113 vtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~----~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D 184 (436)
+-...|+++++.+ |.+.++.--.+.+...-+...+. ...+......|+++++.+.+.++..+-++.+++ |+|
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-S
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCce
Confidence 3335667766644 77654432222222221222221 112334567899999999999999999988765 899
Q ss_pred EEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc---CCChhhHHHHHHHHHHcC-ccEEEecc
Q 013813 185 YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---FPNLQDTIKYAKMLEDAG-CSLLAVHG 260 (436)
Q Consensus 185 ~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl---g~~~~d~~~~ak~le~aG-~d~I~VHg 260 (436)
+|-+-. |. |. ..+.+.+.+-.+.|.+.+++|+.+=-.. |.+. ..++...+.+.+ +-+|-..
T Consensus 99 ~v~v~~--P~-------~~---~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~l--s~~~l~~L~~~~nv~giK~s- 163 (289)
T PF00701_consen 99 AVLVIP--PY-------YF---KPSQEELIDYFRAIADATDLPIIIYNNPARTGNDL--SPETLARLAKIPNVVGIKDS- 163 (289)
T ss_dssp EEEEEE--ST-------SS---SCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTS--HHHHHHHHHTSTTEEEEEES-
T ss_pred EEEEec--cc-------cc---cchhhHHHHHHHHHHhhcCCCEEEEECCCccccCC--CHHHHHHHhcCCcEEEEEcC-
Confidence 998864 43 11 2246667888888888889999986533 3321 223333333322 2222111
Q ss_pred CcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 261 RTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 261 Rt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
..|+..+.++.+... --.+.+| +-+.+...+.. |++|++.|-+.+ -|+++.++-
T Consensus 164 -----------~~~~~~~~~~~~~~~~~~~v~~G---~d~~~~~~l~~-G~~G~is~~~n~-~P~~~~~i~ 218 (289)
T PF00701_consen 164 -----------SGDLERLIQLLRAVGPDFSVFCG---DDELLLPALAA-GADGFISGLANV-FPELIVEIY 218 (289)
T ss_dssp -----------SSBHHHHHHHHHHSSTTSEEEES---SGGGHHHHHHT-TSSEEEESGGGT-HHHHHHHHH
T ss_pred -----------chhHHHHHHHhhhcccCeeeecc---ccccccccccc-cCCEEEEccccc-ChHHHHHHH
Confidence 234544555555542 2235556 22335566665 999999998766 467666554
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.086 Score=54.58 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=37.7
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++||+.= ||.+.+|++.+.+. |+|+|.|+
T Consensus 214 ~~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~~-Gvd~I~VS 256 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALKA-GASGIWVT 256 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHHc-CcCEEEEC
Confidence 468999999999999999966 69999999999986 99998664
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.088 Score=53.59 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=69.4
Q ss_pred ccCChHHHHHHHHHHhcccC-ccEEEEeccCCC-hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH----HHHH
Q 013813 206 LMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAIK 279 (436)
Q Consensus 206 Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~-~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~----~~i~ 279 (436)
.+.+|+.. +-++.+++... .|+.+-+-.... ..+..++.+.++..+++++.+|--.........+.-++ +.++
T Consensus 93 ~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~ 171 (326)
T cd02811 93 ALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIE 171 (326)
T ss_pred hccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHH
Confidence 45567765 56666766664 888877543210 01334455566667899999985332111111223355 5678
Q ss_pred HHHhhCCCcEEE--ccCCCCHHHHHHHHHhcCcceeeee
Q 013813 280 AVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 280 ~ik~~~~iPVia--nGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+++.+++||+. +|...+.++++.+.+ .|+|+|.++
T Consensus 172 ~l~~~~~vPVivK~~g~g~s~~~a~~l~~-~Gvd~I~vs 209 (326)
T cd02811 172 ELVKALSVPVIVKEVGFGISRETAKRLAD-AGVKAIDVA 209 (326)
T ss_pred HHHHhcCCCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 888888999987 565678888888776 599999885
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.076 Score=54.00 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC--ccEEEe---ccCcccccCCCCCccCHHHHHHHHh
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAV---HGRTRDEKDGKKFRADWNAIKAVKN 283 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG--~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~ 283 (436)
+++...+.++.++.. ++ .|-+-.|.+.++. +.+..+.++| +|.|.+ ||-. ..-++.++.+++
T Consensus 67 ~~E~~~sfvrk~k~~-~L--~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~D~ahg~s---------~~~~~~i~~i~~ 133 (321)
T TIGR01306 67 DEESRIPFIKDMQER-GL--FASISVGVKACEY-EFVTQLAEEALTPEYITIDIAHGHS---------NSVINMIKHIKT 133 (321)
T ss_pred CHHHHHHHHHhcccc-cc--EEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEEeCccCch---------HHHHHHHHHHHH
Confidence 666655555555322 33 4444456554554 4455666777 688877 3332 123688999999
Q ss_pred hCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 284 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 284 ~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
....|++..|+|.|.++++.+++. |||+|.+|
T Consensus 134 ~~p~~~vi~GnV~t~e~a~~l~~a-Gad~I~V~ 165 (321)
T TIGR01306 134 HLPDSFVIAGNVGTPEAVRELENA-GADATKVG 165 (321)
T ss_pred hCCCCEEEEecCCCHHHHHHHHHc-CcCEEEEC
Confidence 888999999999999999999986 99999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.1 Score=53.84 Aligned_cols=43 Identities=21% Similarity=0.575 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++|||.=| |.+.+|++++.+. |+|+|.|+
T Consensus 209 ~ltW~dl~wlr~~~~~PvivKg-V~~~~dA~~a~~~-Gvd~I~Vs 251 (366)
T PLN02979 209 TLSWKDVQWLQTITKLPILVKG-VLTGEDARIAIQA-GAAGIIVS 251 (366)
T ss_pred CCCHHHHHHHHhccCCCEEeec-CCCHHHHHHHHhc-CCCEEEEC
Confidence 4689999999999999988655 6789999999986 99998775
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.19 Score=49.55 Aligned_cols=142 Identities=15% Similarity=0.260 Sum_probs=85.7
Q ss_pred CCCEEEEecCCC---HHHHHHHH-----HHHcCCCcE--EEEecCCCchhhhcCcccccccCChHHHHHHHHHHh--ccc
Q 013813 157 DRPLFVQFCAND---PEILLNAA-----RRVEPYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA--LNL 224 (436)
Q Consensus 157 e~plivQL~g~d---~e~~~~AA-----~~v~~g~D~--IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~--~~~ 224 (436)
+.|+++.|.+++ ++.+.++. ..+..|+|+ +-||+|+... .+.++++.+.+. ...
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e--------------~~~i~~~~~v~~~a~~~ 142 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE--------------REMIENISQVVEDAHEL 142 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcch--------------HHHHHHHHHHHHHHHHc
Confidence 678888888872 22232222 233446665 5667776542 344444444332 245
Q ss_pred CccEEEEecc-CCCh--------hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCC
Q 013813 225 NVPVSCKIRV-FPNL--------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 225 ~iPVsVKiRl-g~~~--------~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI 295 (436)
++|+.+=+=. |... +.+...++...+.|+|.|-+- +++ +-+.++++.+...+||+..||=
T Consensus 143 Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~---------ytg--~~e~F~~vv~~~~vpVviaGG~ 211 (265)
T COG1830 143 GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK---------YTG--DPESFRRVVAACGVPVVIAGGP 211 (265)
T ss_pred CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec---------CCC--ChHHHHHHHHhCCCCEEEeCCC
Confidence 8898774321 2221 223344567789999988431 222 2366788888888999999997
Q ss_pred CC--HHHHH----HHHHhcCcceeeeehHHhhCCc
Q 013813 296 RH--MEDVQ----KCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 296 ~s--~eda~----~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++ .+++. ..++. |+.|+.+||=+...+.
T Consensus 212 k~~~~~~~l~~~~~ai~a-Ga~G~~~GRNifQ~~~ 245 (265)
T COG1830 212 KTETEREFLEMVTAAIEA-GAMGVAVGRNIFQHED 245 (265)
T ss_pred CCCChHHHHHHHHHHHHc-cCcchhhhhhhhccCC
Confidence 76 34444 34554 9999999997765544
|
|
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.21 Score=52.17 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=88.8
Q ss_pred CHHHHHHHHH-HHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.+-++ .++ .||..+-|..|- .+++.-.+.|+++++.+ ++.+.|...-+++.+++.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 6777776664 444 599999887541 22444556777887776 35566665557888999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
++.+++ ++.+| ++ .. + |++..+++++.+++||.+.=.+.+.+++.++++...+|.++
T Consensus 233 ~~~l~~-~l~~i-------Ee--P~--~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~ 289 (395)
T cd03323 233 AKELEG-VLAYL-------ED--PC--G-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPL 289 (395)
T ss_pred HHhcCc-CCCEE-------EC--CC--C-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEe
Confidence 999998 87765 22 11 3 78889999999999999877899999999999987788774
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.12 Score=53.04 Aligned_cols=89 Identities=20% Similarity=0.305 Sum_probs=66.1
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcc-------cccC----------------------------CCC
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------DEKD----------------------------GKK 270 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~-------~~~~----------------------------~~~ 270 (436)
.|+++-+-...+.+.+.++.+.++++|++.|.||--+. +.+. ...
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 57776655555667778899999999999998862111 1000 011
Q ss_pred CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 271 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 271 g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+...|+.++.+++..++||+.- ||.+.+|++.+.+. |+|+|.+.
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~~-G~d~I~vs 241 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAEY-GVDGIVLS 241 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHHc-CCCEEEEE
Confidence 2367999999999999999887 67899999998875 99998875
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.032 Score=63.05 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=57.0
Q ss_pred cCccEEEeccCccccc-CCCCCccCHHHHHHHHhhCC---CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 251 AGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 251 aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~~---iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
+|+|+|.+..-..... .+...+..|+.++++++..+ +||++-||| +.+++.++++. |++||.+.++++..++..
T Consensus 127 ~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~-Ga~giAvisai~~a~d~~ 204 (755)
T PRK09517 127 ALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAAT-GIDGLCVVSAIMAAANPA 204 (755)
T ss_pred CCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHc-CCCEEEEehHhhCCCCHH
Confidence 3699998865433221 12222457899999998887 999999999 68999998885 999999999998777644
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.12 Score=51.52 Aligned_cols=97 Identities=25% Similarity=0.360 Sum_probs=64.4
Q ss_pred HHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC-----CCCCccCHHHHHHHHhhCCCcEE--
Q 013813 218 EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVL-- 290 (436)
Q Consensus 218 ~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~-----~~~g~ad~~~i~~ik~~~~iPVi-- 290 (436)
...++..+.|+.+=++ +.+.++..+.|+.++++|+|+|.+|-....... ......-.+.++.+++.+++||+
T Consensus 82 ~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK 160 (296)
T cd04740 82 LPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK 160 (296)
T ss_pred HHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence 3344445789988875 445688889999999999999999754322111 01001123567778888789987
Q ss_pred EccCCCCHHHHHHHHHhcCcceeee
Q 013813 291 ANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 291 anGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+.++.+..++.+.+++.|+|+|.+
T Consensus 161 l~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 161 LTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred eCCCchhHHHHHHHHHHcCCCEEEE
Confidence 4555555666556666679999865
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.082 Score=52.60 Aligned_cols=91 Identities=16% Similarity=0.291 Sum_probs=60.7
Q ss_pred HHHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-----C
Q 013813 213 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----L 285 (436)
Q Consensus 213 v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-----~ 285 (436)
+.+.++.+++... .+|.|=++ ..+-++.+.++|+|.|-+-. .+.+.++++.+. .
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~-------tleea~~A~~~GaDiI~LDn------------~~~e~l~~~v~~~~~~~~ 228 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECE-------SLEEAKNAMNAGADIVMCDN------------MSVEEIKEVVAYRNANYP 228 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeC-------CHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhhccCC
Confidence 4566777776653 45555432 23335556689999886532 234555555443 3
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.|.++||| +++.+.++.+ +|+|.|.+|.....-|+
T Consensus 229 ~~~ieAsGgI-t~~ni~~ya~-~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 229 HVLLEASGNI-TLENINAYAK-SGVDAISSGSLIHQATW 265 (273)
T ss_pred CeEEEEECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCc
Confidence 5679999999 9999999987 59999999976553443
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.37 Score=48.26 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCccee
Q 013813 240 DTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGV 313 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgV 313 (436)
+..+..+.+++.|+|.+.+ ||..... .+...+++.+++|++.+++|+++-||+..+ ++++++++. |+.-|
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~~~---~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~-GI~Ki 225 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYPKD---KKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQL-GVGKI 225 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCcccCCcCCC---CCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHC-CCeEE
Confidence 3344344445669999999 7765432 122468999999999999999999998655 556667764 88888
Q ss_pred eeehHH
Q 013813 314 LSAESL 319 (436)
Q Consensus 314 mIGRga 319 (436)
=|++.+
T Consensus 226 Ni~T~l 231 (283)
T PRK08185 226 NISSDM 231 (283)
T ss_pred EeChHH
Confidence 777655
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.49 Score=47.96 Aligned_cols=131 Identities=10% Similarity=0.138 Sum_probs=90.9
Q ss_pred CCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+.+-| .+++++.+.+ +.++.|+..+-+-.|= .+++.-.+.|+++++.+ ++.+.+-..-
T Consensus 110 ~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 172 (320)
T PRK02714 110 LSYSALL--PAGEAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANG 172 (320)
T ss_pred Cceeeec--CCCHHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 4444444 2334455444 4567799888886431 23444566677777776 4666666666
Q ss_pred CCChhhHHHHHHHHHH---cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 235 FPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 235 g~~~~d~~~~ak~le~---aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+|+.+++..+++.+++ .++.+| +|... .-+++..+.+++.+++||.+.=.+.+..|+.++++...+|
T Consensus 173 ~w~~~~A~~~~~~l~~l~~~~i~~i-------EqP~~---~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d 242 (320)
T PRK02714 173 GLSLEEAKRWLQLCDRRLSGKIEFI-------EQPLP---PDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRG 242 (320)
T ss_pred CCCHHHHHHHHHHHhhccCCCccEE-------ECCCC---cccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCC
Confidence 7899999999999987 566665 22111 2368888999999999999999999999999999875566
Q ss_pred eeee
Q 013813 312 GVLS 315 (436)
Q Consensus 312 gVmI 315 (436)
.|.+
T Consensus 243 ~v~i 246 (320)
T PRK02714 243 IFVI 246 (320)
T ss_pred EEEE
Confidence 5543
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.18 Score=50.21 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++.+ ..|+++|=+|. ..|-+..-..+.=.++++.+.+.+ ++||.+-+-. .+..+++++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~G----------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~ 88 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVG----------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIEL 88 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHHH
Confidence 566777777654 56999999873 234444444555556666555544 4788877422 366899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-E-----ccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-a-----nGGI~s~eda~~~l~~tGaDgVm 314 (436)
++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+ + .|---+.+.+.++.+...+-|+=
T Consensus 89 a~~a~~~G~d~v~~~pP~~~~---~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK 161 (292)
T PRK03170 89 TKFAEKAGADGALVVTPYYNK---PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIK 161 (292)
T ss_pred HHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 999999999999885432110 0001224667778887888876 2 35556777777775433444443
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.49 Score=45.75 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=86.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchh--hh------cC-----cccccccCChHHHHHHHHHHhc
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRI--AR------RG-----NYGAFLMDNLPLVKSLVEKLAL 222 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~--~~------~~-----~~Gs~Ll~~p~~v~eIv~av~~ 222 (436)
..+++.=+.+.++++..+.++.+ +.|...|||-+-.|... .+ .. .-|+.-.-+++.+.+.+++=.+
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~ 93 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN 93 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC
Confidence 46778778999999999999765 55899999998655421 00 00 1222223344444333322000
Q ss_pred c----------------cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-C
Q 013813 223 N----------------LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-L 285 (436)
Q Consensus 223 ~----------------~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~ 285 (436)
- .++|+.-. ....-| +..+.++|++.|-+..-. .....+++.++.- .
T Consensus 94 FiVsP~~~~~v~~~~~~~~i~~iPG------~~TpsE-i~~A~~~Ga~~vKlFPA~---------~~G~~~ikal~~p~p 157 (222)
T PRK07114 94 FIVTPLFNPDIAKVCNRRKVPYSPG------CGSLSE-IGYAEELGCEIVKLFPGS---------VYGPGFVKAIKGPMP 157 (222)
T ss_pred EEECCCCCHHHHHHHHHcCCCEeCC------CCCHHH-HHHHHHCCCCEEEECccc---------ccCHHHHHHHhccCC
Confidence 0 01111000 000111 112334555555444311 0124678888764 4
Q ss_pred CCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 286 RIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 286 ~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+++++..|||.- .+++.++++. |+.+|.+|+.+..+.+
T Consensus 158 ~i~~~ptGGV~~~~~n~~~yl~a-Ga~avg~Gs~L~~~~~ 196 (222)
T PRK07114 158 WTKIMPTGGVEPTEENLKKWFGA-GVTCVGMGSKLIPKEA 196 (222)
T ss_pred CCeEEeCCCCCcchhcHHHHHhC-CCEEEEEChhhcCccc
Confidence 799999999985 5899999995 9999999987775444
|
|
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.37 Score=48.58 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=90.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~ 236 (436)
+....|...+++.+.+.+.. +.|+..|-+..| . .+++.-.+.|+++++.++ +.+.+-..-+|
T Consensus 102 ~~~~~l~~~~~~~~~~~~~~-~~Gf~~~KiKvG------------~---~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w 165 (307)
T TIGR01927 102 YYVALLPAGDPALLLLRSAK-AEGFRTFKWKVG------------V---GELAREGMLVNLLLEALPDKAELRLDANGGL 165 (307)
T ss_pred cceeeccCCCHHHHHHHHHH-hCCCCEEEEEeC------------C---CChHHHHHHHHHHHHHcCCCCeEEEeCCCCC
Confidence 33445666778877665554 568888887643 1 134555667777777663 44555544568
Q ss_pred ChhhHHHHHHHHHH---cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 237 NLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 237 ~~~d~~~~ak~le~---aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.+++.++++.+++ .++.+| ++. . +. ++..+.+++.+++||.+.=.+.+..|+.++++...+|.|
T Consensus 166 ~~~~A~~~~~~l~~~~~~~i~~i-------EqP--~--~~-~~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i 233 (307)
T TIGR01927 166 SPDEAQQFLKALDPNLRGRIAFL-------EEP--L--PD-ADEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGAL 233 (307)
T ss_pred CHHHHHHHHHhcccccCCCceEE-------eCC--C--CC-HHHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceE
Confidence 88899999999997 677776 221 1 22 267788999999999999999999999999987556776
Q ss_pred ee
Q 013813 314 LS 315 (436)
Q Consensus 314 mI 315 (436)
.+
T Consensus 234 ~i 235 (307)
T TIGR01927 234 VI 235 (307)
T ss_pred EE
Confidence 54
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.12 Score=53.41 Aligned_cols=43 Identities=21% Similarity=0.575 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++|||.=| |.+.+|++.+++. |||+|.|+
T Consensus 210 ~~tW~di~wlr~~~~~PiivKg-V~~~~dA~~a~~~-Gvd~I~Vs 252 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILVKG-VLTGEDARIAIQA-GAAGIIVS 252 (367)
T ss_pred CCCHHHHHHHHhccCCCEEeec-CCCHHHHHHHHHc-CCCEEEEC
Confidence 4689999999999999988654 5789999999986 99998875
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.1 Score=54.33 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=69.2
Q ss_pred HHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHH----HHHHhhCC
Q 013813 217 VEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAI----KAVKNALR 286 (436)
Q Consensus 217 v~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i----~~ik~~~~ 286 (436)
+..+++.. ++||.+=+--+.+.++..++++.++++|+|+|.+ |+..-.. .+....-+.+.+ +.+++.++
T Consensus 104 i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~ 182 (385)
T PLN02495 104 FKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKAT 182 (385)
T ss_pred HHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhc
Confidence 45566555 6799988644467789999999999999999987 3210000 000001234445 55576678
Q ss_pred CcEE--EccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 287 IPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 287 iPVi--anGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
+||+ ..-++.+..++.+.+.+.|+|||.+---+.
T Consensus 183 iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 183 VPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred CceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 8876 677888888888877778999988754443
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.2 Score=49.76 Aligned_cols=126 Identities=19% Similarity=0.152 Sum_probs=81.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+++|=++. ..|-+..-..+.=.++++.+.+.+ .+||.+-+- ..+.++++++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~~i~~ 85 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVG----------TTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEEAISL 85 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHHHHHH
Confidence 55666666654 467999998872 234344444555555555554443 478888842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE------ccCCCCHHHHHHHHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA------NGNVRHMEDVQKCLEE 307 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia------nGGI~s~eda~~~l~~ 307 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+. .|---+++.+.++.+.
T Consensus 86 a~~a~~~Gad~v~v~pP~y~---~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 151 (285)
T TIGR00674 86 TKFAEDVGADGFLVVTPYYN---KPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEE 151 (285)
T ss_pred HHHHHHcCCCEEEEcCCcCC---CCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcC
Confidence 99999999999988643221 011112246677888888888862 4555677878777654
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.14 Score=52.97 Aligned_cols=43 Identities=23% Similarity=0.621 Sum_probs=38.7
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
...|+.|+.|++..+.|||.-| |.+.+|++++++. |+|+|.++
T Consensus 222 ~~~w~~i~~ir~~~~~pviiKg-V~~~eda~~a~~~-G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLWPHKLLVKG-IVTAEDAKRCIEL-GADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhCCCCEEEec-CCCHHHHHHHHHC-CcCEEEEC
Confidence 4679999999999999999886 9999999999986 99999875
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.71 Score=43.97 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchh--h---hc----CcccccccCChHHHHHHHHHHhcccCc
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRI--A---RR----GNYGAFLMDNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~--~---~~----~~~Gs~Ll~~p~~v~eIv~av~~~~~i 226 (436)
..+++.=|-+.++++..+.++.+ +.|+..|||.+-.|... . ++ -.-|+.-.-+++.+.+.+++=.
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA----- 77 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS----- 77 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-----
Confidence 46788889999999999999866 55899999998655420 0 00 0012222223333333332210
Q ss_pred cEEEEeccCCChhhHHHH-----------------HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCc
Q 013813 227 PVSCKIRVFPNLQDTIKY-----------------AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIP 288 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~-----------------ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iP 288 (436)
-+.|= .+.+ .+..+. +..+.++|++.|-+..-.. .+ --.+++.++.- .++|
T Consensus 78 ~FivS--P~~~-~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~---~G-----G~~yikal~~plp~~~ 146 (201)
T PRK06015 78 RFIVS--PGTT-QELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQ---AG-----GAAFLKALSSPLAGTF 146 (201)
T ss_pred CEEEC--CCCC-HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchh---hC-----CHHHHHHHHhhCCCCc
Confidence 00000 0000 011111 1112334444444432111 00 13678888865 4899
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
++..|||. .+.+.++++. |+..+..|..+.
T Consensus 147 l~ptGGV~-~~n~~~~l~a-g~~~~~ggs~l~ 176 (201)
T PRK06015 147 FCPTGGIS-LKNARDYLSL-PNVVCVGGSWVA 176 (201)
T ss_pred EEecCCCC-HHHHHHHHhC-CCeEEEEchhhC
Confidence 99999997 5899999997 555555564443
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.081 Score=51.87 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+..++|+.++++|+++|.|.-- +.+ + .-+++.++.+++.+++||+..+.|.++.++.+... .|||+|.+=-+
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe---~~~-F--~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~-~GADavLLI~~ 133 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTD---QSY-F--GGSLEDLKSVSSELKIPVLRKDFILDEIQIREARA-FGASAILLIVR 133 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcC---CCc-C--CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHH-cCCCEEEeEHh
Confidence 36788999999999999977522 111 2 34689999999999999999999999999999988 59999976544
Q ss_pred Hhh
Q 013813 319 LLE 321 (436)
Q Consensus 319 al~ 321 (436)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 443
|
|
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.46 Score=48.16 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=88.6
Q ss_pred CCCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
..|+...+...+++++.+.+ +.++.||..+-+-.| | ..+ .+.++++++.+ ++.+.+-..-
T Consensus 121 ~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-------------~~d----~~~v~~vr~~~~~~~l~vDaN~ 182 (324)
T TIGR01928 121 KAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-P-------------QIM----HQLVKLRRLRFPQIPLVIDANE 182 (324)
T ss_pred eEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-------------chh----HHHHHHHHHhCCCCcEEEECCC
Confidence 34555556667777776666 455679998888753 1 012 34566666665 2334444444
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+|+.+++ ..++.+++.++.+| ++... +-|++..+++++.+++||.+.=.+.+..+++++++...+|.++
T Consensus 183 ~~~~~~a-~~~~~l~~~~~~~i-------EeP~~---~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~ 251 (324)
T TIGR01928 183 SYDLQDF-PRLKELDRYQLLYI-------EEPFK---IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVIN 251 (324)
T ss_pred CCCHHHH-HHHHHHhhCCCcEE-------ECCCC---hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 5776664 56888888887776 21110 2367888999999999999988899999999999987788875
Q ss_pred e
Q 013813 315 S 315 (436)
Q Consensus 315 I 315 (436)
+
T Consensus 252 ~ 252 (324)
T TIGR01928 252 I 252 (324)
T ss_pred e
Confidence 3
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.11 Score=53.08 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc--cEEEeccCcccccCCCCCccCHHHHHHHHhhCC
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC--SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 286 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~--d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~ 286 (436)
+++...+.++.++ +..+.|-+-.+.+.++ .+-+..+.++|+ |.|.|-.-... ...-.+.|+++++..+
T Consensus 70 ~~e~~~~~~r~~~---~~~l~v~~~vg~~~~~-~~~~~~Lv~ag~~~d~i~iD~a~gh------~~~~~e~I~~ir~~~p 139 (326)
T PRK05458 70 DPEARIPFIKDMH---EQGLIASISVGVKDDE-YDFVDQLAAEGLTPEYITIDIAHGH------SDSVINMIQHIKKHLP 139 (326)
T ss_pred CHHHHHHHHHhcc---ccccEEEEEecCCHHH-HHHHHHHHhcCCCCCEEEEECCCCc------hHHHHHHHHHHHhhCC
Confidence 6766666664443 2233455445544333 455777778855 99988322110 0223577999998775
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
-..+..|+|.|.++++.+.+. |||+|.+|
T Consensus 140 ~~~vi~g~V~t~e~a~~l~~a-Gad~i~vg 168 (326)
T PRK05458 140 ETFVIAGNVGTPEAVRELENA-GADATKVG 168 (326)
T ss_pred CCeEEEEecCCHHHHHHHHHc-CcCEEEEC
Confidence 344566779999999998886 99999877
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.38 Score=48.07 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=84.5
Q ss_pred CHHHHHHHHHH-Hc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAARR-VE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
|.+.+.+-++. +. .|+++|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+-+-. .+.+++++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai~ 90 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQE 90 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHHH
Confidence 55667766654 46 7899998883 344444445566666666665555 4788887422 45689999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc------cCCCCHHHHHHHHHhcCccee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN------GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian------GGI~s~eda~~~l~~tGaDgV 313 (436)
+++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+.- |---+++.+.++.+..++-||
T Consensus 91 ~a~~a~~~Gad~v~v~~P~y~~---~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgi 163 (293)
T PRK04147 91 LAKYATELGYDAISAVTPFYYP---FSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGV 163 (293)
T ss_pred HHHHHHHcCCCEEEEeCCcCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEE
Confidence 9999999999999886432110 111122566778888888887643 444567777776643334343
|
|
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.079 Score=50.06 Aligned_cols=82 Identities=30% Similarity=0.319 Sum_probs=59.7
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+.++..+..+.+...--..+++-...+-+.+. ..|++++..+.....-||+..|||.-.+|.+.+... |++||.+
T Consensus 134 ~~~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~---G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~-Gv~gvLv 209 (229)
T COG1411 134 PWLEDFLETVKDLNYRRDPGLIVLDIGAVGTKS---GPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGM-GVSGVLV 209 (229)
T ss_pred CCchhHHHHHHHHhccCCCCeEEEEcccccccc---CCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcC-CCceeee
Confidence 446677777776655443334443222222222 368999999999889999999999999999998884 9999999
Q ss_pred ehHHhh
Q 013813 316 AESLLE 321 (436)
Q Consensus 316 GRgal~ 321 (436)
|+++-.
T Consensus 210 aTalh~ 215 (229)
T COG1411 210 ATALHE 215 (229)
T ss_pred hhhhhc
Confidence 998754
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.26 Score=50.55 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=77.8
Q ss_pred HHHcCCCcEEEEecCCCchhhhcCccccccc-----CChHHHHHHHHHHhcccCccEEEEe--c-cCC-----------C
Q 013813 177 RRVEPYCDYVDINLGCPQRIARRGNYGAFLM-----DNLPLVKSLVEKLALNLNVPVSCKI--R-VFP-----------N 237 (436)
Q Consensus 177 ~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll-----~~p~~v~eIv~av~~~~~iPVsVKi--R-lg~-----------~ 237 (436)
++++.|+|+|-+++- ||+.-- .....+.++.++++ ..++|+.+=+ . .+. .
T Consensus 114 ~a~~~GAdAVk~lv~----------~~~d~~~~~~~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~~ 182 (340)
T PRK12858 114 RIKEAGADAVKLLLY----------YRPDEDDAINDRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKVK 182 (340)
T ss_pred HHHHcCCCEEEEEEE----------eCCCcchHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCccccccccccccC
Confidence 345679998877641 222100 11234566666654 4489987742 1 111 1
Q ss_pred hhhHHHHHHHHHH--cCccEEEeccC----cccccC----CCCCccCHHHHHHHHhhCCCcEEE-ccCCCCHHHHHHHHH
Q 013813 238 LQDTIKYAKMLED--AGCSLLAVHGR----TRDEKD----GKKFRADWNAIKAVKNALRIPVLA-NGNVRHMEDVQKCLE 306 (436)
Q Consensus 238 ~~d~~~~ak~le~--aG~d~I~VHgR----t~~~~~----~~~g~ad~~~i~~ik~~~~iPVia-nGGI~s~eda~~~l~ 306 (436)
.+.....++.+.+ .|+|.+-+--- ..++.. -++...-.+.++++.+..++|++. +||+ +.+++.+.++
T Consensus 183 p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~ 261 (340)
T PRK12858 183 PEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLE 261 (340)
T ss_pred HHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHH
Confidence 2344566777774 99999866211 111100 000011124567777778899765 7887 6666665543
Q ss_pred ---hcCc--ceeeeehHHhhCCc
Q 013813 307 ---ETGC--EGVLSAESLLENPA 324 (436)
Q Consensus 307 ---~tGa--DgVmIGRgal~nP~ 324 (436)
..|+ .||.+||....++-
T Consensus 262 ~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 262 FACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHHcCCCccchhhhHHHHhhhh
Confidence 2489 99999999877665
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.35 Score=48.45 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=86.3
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. +..|+++|=++. ..|-+..-..+.-.++++.+.+.+ ++||.+-+-. .+..+++++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~G----------stGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~~ 87 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGG----------TSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDETLEL 87 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHHHHHH
Confidence 55666666654 456899998883 345444445555566666555444 4788877422 456789999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEE-E-----ccCCCCHHHHHHHHH-hcCcceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE-ETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVi-a-----nGGI~s~eda~~~l~-~tGaDgVmIG 316 (436)
++.+++.|+|++.+..-.... .+...-+++.+.|.+.+ ++||+ + .|---+++.+.++.+ ..++-||=-.
T Consensus 88 a~~A~~~Gad~v~v~pP~y~~---~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~s 164 (294)
T TIGR02313 88 TKFAEEAGADAAMVIVPYYNK---PNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKES 164 (294)
T ss_pred HHHHHHcCCCEEEEcCccCCC---CCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeC
Confidence 999999999999886533211 00012256677888888 89976 3 355556777777764 3344454443
Q ss_pred h
Q 013813 317 E 317 (436)
Q Consensus 317 R 317 (436)
.
T Consensus 165 s 165 (294)
T TIGR02313 165 N 165 (294)
T ss_pred C
Confidence 3
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.41 Score=47.68 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=81.0
Q ss_pred CHHHHHHHHHH-HcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAARR-VEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
|.+.+.+-++. ++. |+++|=++- ..|-+..-..+.=.++++.+.+.+ .+||.+-+-. .+..++++
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~G----------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai~ 87 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNG----------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQE 87 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHHH
Confidence 56667776654 467 899998882 334444444555566666555544 4788887432 45688999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEE------ccCCCCHHHHHHHHH
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLA------NGNVRHMEDVQKCLE 306 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVia------nGGI~s~eda~~~l~ 306 (436)
+++.++++|+|++.+..-.... .+...-+++.+.|.+.+ ++||+. .|---+++.+.++.+
T Consensus 88 ~a~~a~~~Gad~v~~~~P~y~~---~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 88 LAKHAEELGYDAISAITPFYYK---FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHHHHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9999999999999875422111 00012256678888888 889863 344557777777665
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.12 Score=52.66 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH--cCccEEEe---ccCcccccCCCCCccCHHHHHHHHhh
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED--AGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA 284 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~--aG~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~ 284 (436)
++.-.+.++.++.....-+.| ..|...++ .+.++.|.+ +|+|.|+| ||-.. .-.+.|+.||+.
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~d-~er~~~L~~~~~g~D~iviD~AhGhs~---------~~i~~ik~ik~~ 148 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSDAD-FEKTKQILALSPALNFICIDVANGYSE---------HFVQFVAKAREA 148 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCHHH-HHHHHHHHhcCCCCCEEEEECCCCcHH---------HHHHHHHHHHHh
Confidence 455555555555443223333 23434344 344555555 69999988 33321 235789999987
Q ss_pred C-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 285 L-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 285 ~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
. +++ +..|+|-|.+.++.+++. |||+|-+|=|
T Consensus 149 ~P~~~-vIaGNV~T~e~a~~Li~a-GAD~vKVGIG 181 (346)
T PRK05096 149 WPDKT-ICAGNVVTGEMVEELILS-GADIVKVGIG 181 (346)
T ss_pred CCCCc-EEEecccCHHHHHHHHHc-CCCEEEEccc
Confidence 5 555 667999999999998886 9999876633
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.61 Score=46.77 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHhcccCccEEEEecc-C-C-C--------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHH
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRV-F-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 276 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRl-g-~-~--------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~ 276 (436)
++-+..+++++..+ ..+++|-.=+-. | . + ..++.+..+.+++.|+|.+.|.-.|..+.|......|++
T Consensus 115 eNi~~T~~vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~ 193 (286)
T PRK08610 115 ENVATTKKVVEYAH-EKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFK 193 (286)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHH
Confidence 34555666666554 345555544321 1 0 0 124444455556889999977544444444333357999
Q ss_pred HHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 277 AIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 277 ~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
.+++|++.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 194 ~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~-GI~KiNi~T~l 236 (286)
T PRK08610 194 EMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPF-GTAKINVNTEN 236 (286)
T ss_pred HHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHC-CCeEEEeccHH
Confidence 9999999999999999986666 667777774 88877777544
|
|
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.29 Score=48.67 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=88.6
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 155 KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.+-|++--+ .++++...++ +.+|.+.| |+.++++.+++. ++. .++.||-+|=-.
T Consensus 85 ~~GlpvvTeV--~~~~~~~~~a----e~vDilQI--------------gAr~~rntdLL~----a~~-~t~kpV~lKrGq 139 (281)
T PRK12457 85 RFGVPVITDV--HEVEQAAPVA----EVADVLQV--------------PAFLARQTDLVV----AIA-KTGKPVNIKKPQ 139 (281)
T ss_pred HHCCceEEEe--CCHHHHHHHh----hhCeEEee--------------CchhhchHHHHH----HHh-ccCCeEEecCCC
Confidence 3466777655 3444444443 33677765 677788765554 443 458999999554
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEc---------------cCCCCH
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLAN---------------GNVRHM 298 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVian---------------GGI~s~ 298 (436)
+.+.++....++.+.+.|...|.+.-|-..-.+. ....|...+..+++. .++|||.- ||.+..
T Consensus 140 f~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~-~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~ 218 (281)
T PRK12457 140 FMSPTQMKHVVSKCREAGNDRVILCERGSSFGYD-NLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQ 218 (281)
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCC-CcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHH
Confidence 5777888888999999999999886554331121 225788888999986 68999863 443322
Q ss_pred --HHHHHHHHhcCcceeeee
Q 013813 299 --EDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 299 --eda~~~l~~tGaDgVmIG 316 (436)
.-++..+. .|+||+||=
T Consensus 219 v~~larAAvA-~GaDGl~iE 237 (281)
T PRK12457 219 VLDLARAGMA-VGLAGLFLE 237 (281)
T ss_pred HHHHHHHHHH-hCCCEEEEE
Confidence 22333444 599999986
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.42 Score=45.52 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC-----hhhH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-----LQDT 241 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~-----~~d~ 241 (436)
+.....++++.+ +.|+..+++| .+ +.++.+++.+++||..-.|.+.+ ....
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~-------------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~ 81 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRAN-------------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPT 81 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcC-------------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCC
Confidence 456777888755 5578777741 12 33455555578898653333221 1112
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+.++.+.++|++.|.+....... .. +....++++.+++..++|++. ++.|.+++..+.+. |+|.+.+.
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~-p~--~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~~-G~d~i~~~ 150 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPR-PD--GETLAELIKRIHEEYNCLLMA--DISTLEEALNAAKL-GFDIIGTT 150 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCC-CC--CcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHHc-CCCEEEcc
Confidence 456788999999988775432210 00 012346677777665677776 78899999888875 99998653
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.4 Score=47.90 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=79.6
Q ss_pred CHHHHHHHHHH-HcCC-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAARR-VEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
|.+.+.+-++. +..| +++|=+| |..|-+..-..+.-.++++.+.+.+ .+||.+-+- ..+.+++++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~----------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~i~ 87 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVG----------GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKEAVE 87 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEEC----------CcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHH
Confidence 55666666654 4568 9999888 3345444446666667777666555 478888843 245689999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEE-E-----ccCCCCHHHHHHHHH
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 306 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVi-a-----nGGI~s~eda~~~l~ 306 (436)
+++.++++|+|+|.+..-.... .+...-+++.+.+.+.+ ++||+ + .|---+++.+.++.+
T Consensus 88 la~~a~~~Gad~v~v~~P~y~~---~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 88 LGKYATELGYDCLSAVTPFYYK---FSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHHhCCCEEEEeCCcCCC---CCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 9999999999999885322110 00011245566676655 67765 3 255556777776654
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.17 Score=50.76 Aligned_cols=92 Identities=14% Similarity=0.333 Sum_probs=58.4
Q ss_pred HHHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh-----hC
Q 013813 213 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-----AL 285 (436)
Q Consensus 213 v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~-----~~ 285 (436)
+.+.++.+++..+ ..|.|-++ +.++ +..+.++|+|.|-+-.-. .+.++++.+ ..
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~---tlee----a~eA~~~GaD~I~LDn~~------------~e~l~~av~~~~~~~~ 242 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETE---TLEQ----VQEALEYGADIIMLDNMP------------VDLMQQAVQLIRQQNP 242 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECC---CHHH----HHHHHHcCCCEEEECCCC------------HHHHHHHHHHHHhcCC
Confidence 4456666666653 23333321 2233 444558999999775221 233333332 35
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
++|+.++||| +.+.+.++.+ +|+|+|.+|.....-|++
T Consensus 243 ~i~leAsGGI-t~~ni~~ya~-tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 243 RVKIEASGNI-TLETIRAVAE-TGVDYISSSAPITRSPWL 280 (288)
T ss_pred CeEEEEECCC-CHHHHHHHHH-cCCCEEEEchhhhCCCcc
Confidence 7899999999 4899999886 699999999877655553
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.17 Score=50.55 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=47.0
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
++.+.+.|+|+|.+- ....+.++++++..+ +||.+.||| +.+.+.++.+ +|+|+|.+|.-..
T Consensus 201 a~~A~~~gaDyI~lD------------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~-~Gvd~IAvg~l~~ 264 (277)
T PRK08072 201 VREAVAAGADIIMFD------------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG-TGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHcCCCEEEEC------------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-cCCCEEEEChhhc
Confidence 455668999999772 123466777777654 778899999 5899999887 5999999996433
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.36 Score=47.84 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=101.1
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
++|+++|-....++..+-+.+.+.|++.+.|.-++.+....+...+ ++.+-... + .
T Consensus 9 ~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr-------------~~~~~~~~-~----------~ 64 (289)
T cd02810 9 KNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPR-------------VARLPPEG-E----------S 64 (289)
T ss_pred CCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCC-------------EEEecccc-c----------c
Confidence 6789999888866776666666789999999888765443333221 12111100 0 0
Q ss_pred CC-cEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 182 YC-DYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 182 g~-D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
+. +.==+| +|-|. .-++...+-+...++. .+.|+.+=++. .+.++..+.++.++++|+|+|.+
T Consensus 65 ~~~~~~~~n~~g~~~-------------~g~~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~iel 130 (289)
T cd02810 65 YPEQLGILNSFGLPN-------------LGLDVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALEL 130 (289)
T ss_pred CcccceEeecCCCCC-------------cCHHHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEE
Confidence 00 111122 11111 0133333333333443 57898888654 45678889999999999999999
Q ss_pred ccCcccccCCCCCc----cCHHHHHHHHhhCCCcEEE--ccCCC--CHHHHHHHHHhcCcceeeee
Q 013813 259 HGRTRDEKDGKKFR----ADWNAIKAVKNALRIPVLA--NGNVR--HMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 259 HgRt~~~~~~~~g~----ad~~~i~~ik~~~~iPVia--nGGI~--s~eda~~~l~~tGaDgVmIG 316 (436)
+........+.... .-.+.++.+++.+++||++ ++++. +..++.+.+++.|+|+|.+.
T Consensus 131 N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 131 NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 75543221111001 1135677788877888874 44443 23333444556799999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.46 Score=51.03 Aligned_cols=215 Identities=15% Similarity=0.183 Sum_probs=122.8
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHhCCCcEEEccCCCCC-cHHHHHHHHHhC--C----CeEEeCcccchhhccChhhhh
Q 013813 76 SLPSPRGYLSGEARAERAWAHWTKLGRPKLIVAPMVDNS-ELPFRMLCRRYG--A----EAAYTPMLHSRIFTESEKYRN 148 (436)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~i~lAPM~gvt-d~~fR~l~~~~G--a----~l~~Temisa~~l~~~~~~~~ 148 (436)
=+|.--|--+|+.+++. .|-+-+|++||+||-|.-.| |..|=..+.+.| + +-.|||-+ +.+...
T Consensus 10 yaPklvk~~~Gr~~v~T--kfsrLtGr~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~----~~~~i~--- 80 (717)
T COG4981 10 YAPKLVKLPDGRVKVST--KFSRLTGRSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEI----FTNAIE--- 80 (717)
T ss_pred hCcceEecCCCcEEEee--chhhhcCCCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHH----HHHHHH---
Confidence 34444444466655554 36677899999999998766 444433333333 1 12344433 322111
Q ss_pred hhhhccCCCCCEEEEecCCCHHHHHH------HHHH-HcCC--CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHH
Q 013813 149 EEFATCKEDRPLFVQFCANDPEILLN------AARR-VEPY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219 (436)
Q Consensus 149 ~~~~~~~~e~plivQL~g~d~e~~~~------AA~~-v~~g--~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~a 219 (436)
+....-+.++-..++.+--||--+.- -.+. .+.| .|+|-|..|-|. .+...|+|+.
T Consensus 81 ql~~~lepG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~---------------le~A~ElI~~ 145 (717)
T COG4981 81 QLVSLLEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPS---------------LEEAVELIEE 145 (717)
T ss_pred HHHhccCCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCc---------------HHHHHHHHHH
Confidence 11112234444444444444432221 1121 2345 489999988775 3667777777
Q ss_pred HhcccCccEE-EEeccCCChhhHHHHHHHHHHcCccEEEec--cCcccccCCCCCccCH--------HHHHHHHhhCCCc
Q 013813 220 LALNLNVPVS-CKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRTRDEKDGKKFRADW--------NAIKAVKNALRIP 288 (436)
Q Consensus 220 v~~~~~iPVs-VKiRlg~~~~d~~~~ak~le~aG~d~I~VH--gRt~~~~~~~~g~ad~--------~~i~~ik~~~~iP 288 (436)
+.. .++|.. .| .| +++.+...++++.+..---|++| |....+ .-.| ....++++.-+|-
T Consensus 146 L~~-~G~~yv~fK--PG-tIeqI~svi~IAka~P~~pIilq~egGraGG------HHSweDld~llL~tYs~lR~~~NIv 215 (717)
T COG4981 146 LGD-DGFPYVAFK--PG-TIEQIRSVIRIAKANPTFPIILQWEGGRAGG------HHSWEDLDDLLLATYSELRSRDNIV 215 (717)
T ss_pred Hhh-cCceeEEec--CC-cHHHHHHHHHHHhcCCCCceEEEEecCccCC------ccchhhcccHHHHHHHHHhcCCCEE
Confidence 642 355543 34 33 34555556666666655555554 332221 2223 2245677778999
Q ss_pred EEEccCCCCHHHHHHHHHh-----c-----CcceeeeehHHhhCCc
Q 013813 289 VLANGNVRHMEDVQKCLEE-----T-----GCEGVLSAESLLENPA 324 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~-----t-----GaDgVmIGRgal~nP~ 324 (436)
++..|||.+++++..+|.- . -+||+.+|+++|.--.
T Consensus 216 l~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 216 LCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred EEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence 9999999999999998841 1 4899999999987544
|
|
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.7 Score=47.23 Aligned_cols=129 Identities=18% Similarity=0.254 Sum_probs=86.4
Q ss_pred CCEEEEecCCCH-HHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEecc
Q 013813 158 RPLFVQFCANDP-EILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~-e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRl 234 (436)
.|+...+...++ +++.+.+ +.++.||..+-+..| | +.-.+.++++++.++ +.+.+-..-
T Consensus 126 v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~-~-----------------~~d~~~l~~vr~~~g~~~l~lDaN~ 187 (354)
T cd03317 126 IPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-P-----------------GWDVEPLKAVRERFPDIPLMADANS 187 (354)
T ss_pred EEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC-h-----------------HHHHHHHHHHHHHCCCCeEEEECCC
Confidence 345444544443 6666555 456779999888763 1 122345666666653 334444334
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+|+.+++. +++.+++.++.+| ++.. .+.||+..+.+++..++||.+.=.+.+.+++.++++...+|.|.
T Consensus 188 ~~~~~~a~-~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ 256 (354)
T cd03317 188 AYTLADIP-LLKRLDEYGLLMI-------EQPL---AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIIN 256 (354)
T ss_pred CCCHHHHH-HHHHhhcCCccEE-------ECCC---ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEE
Confidence 67777764 7888888887766 2211 13468888999999999999888899999999999986778876
Q ss_pred e
Q 013813 315 S 315 (436)
Q Consensus 315 I 315 (436)
+
T Consensus 257 i 257 (354)
T cd03317 257 I 257 (354)
T ss_pred e
Confidence 5
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=95.13 E-value=0.15 Score=47.87 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=65.7
Q ss_pred HHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE--EEeccCC---ChhhHHHHHH
Q 013813 173 LNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFP---NLQDTIKYAK 246 (436)
Q Consensus 173 ~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs--VKiRlg~---~~~d~~~~ak 246 (436)
.+.|+.+ +.|+.+|-+|- .+-++++++.+++||. +|-.... .+.-+.+-++
T Consensus 2 ~~mA~Aa~~gGA~giR~~~-----------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~ 58 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG-----------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVD 58 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES-----------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHH
T ss_pred HHHHHHHHHCCceEEEcCC-----------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHH
Confidence 3445444 34788999881 1335678889999985 4532211 1112344567
Q ss_pred HHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+.++|+|.|.+.+-.+.- + ..-.++++++++.. +..-.+|.|.+++..+.+. |+|.|.
T Consensus 59 ~l~~aGadIIAlDaT~R~R----p-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~-G~D~I~ 117 (192)
T PF04131_consen 59 ALAEAGADIIALDATDRPR----P-ETLEELIREIKEKY---QLVMADISTLEEAINAAEL-GFDIIG 117 (192)
T ss_dssp HHHHCT-SEEEEE-SSSS-----S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHT-T-SEEE
T ss_pred HHHHcCCCEEEEecCCCCC----C-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHc-CCCEEE
Confidence 7889999999886533321 1 22357888998876 5566799999999999986 999874
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.23 Score=48.81 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=88.3
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
.+-|++--+. ++++...+++ .+|.+.| |+.++++.+++. ++. .++.||-+|=-.+
T Consensus 72 ~glpvvTeV~--~~~~~~~vae----~vDilQI--------------gArn~rn~~LL~----a~g-~t~kpV~lKrG~~ 126 (258)
T TIGR01362 72 FGVPILTDVH--ESSQCEPVAE----VVDIIQI--------------PAFLCRQTDLLV----AAA-KTGRIVNVKKGQF 126 (258)
T ss_pred hCCceEEEeC--CHHHHHHHHh----hCcEEEe--------------CchhcchHHHHH----HHh-ccCCeEEecCCCc
Confidence 4667777653 4455444443 3677765 677788765544 443 3589999996556
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHHHHhhCCCcEEEc---------------cCCCCH-
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLAN---------------GNVRHM- 298 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ik~~~~iPVian---------------GGI~s~- 298 (436)
.+.++....++.+.+.|-..|.+.-|-.. . ++. ...|+..+..+++. ++|||.- ||.+..
T Consensus 127 ~t~~e~l~aaeyi~~~Gn~~viLcERG~t-f-~y~r~~~D~~~ip~~k~~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v 203 (258)
T TIGR01362 127 LSPWDMKNVVEKVLSTGNKNILLCERGTS-F-GYNNLVVDMRSLPIMREL-GCPVIFDATHSVQQPGGLGGASGGLREFV 203 (258)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeCCCC-c-CCCCcccchhhhHHHHhc-CCCEEEeCCccccCCCCCCCCCCCcHHHH
Confidence 78888888999999999998888655442 1 222 24688888888875 8999863 444432
Q ss_pred -HHHHHHHHhcCcceeeee
Q 013813 299 -EDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 299 -eda~~~l~~tGaDgVmIG 316 (436)
.-++..+. .|+||+||=
T Consensus 204 ~~la~AAvA-~GaDGl~iE 221 (258)
T TIGR01362 204 PTLARAAVA-VGIDGLFME 221 (258)
T ss_pred HHHHHHHHH-hCCCEEEEE
Confidence 22233444 499999986
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.7 Score=41.58 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=103.6
Q ss_pred CCCcHHHHHHHHHhCCCe---EEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEE
Q 013813 112 DNSELPFRMLCRRYGAEA---AYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 112 gvtd~~fR~l~~~~Ga~l---~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdL 188 (436)
|+|.+.=-..+.++|+++ ++-+- |.|..... ..+.. ...-++ .+.+.=+...+.+++.+.+.. -+.|.|.|
T Consensus 8 Glt~~eda~~a~~~gad~iG~If~~~-SpR~Vs~~-~a~~i-~~~v~~-~~~VgVf~n~~~~~i~~i~~~--~~ld~VQl 81 (208)
T COG0135 8 GLTRLEDAKAAAKAGADYIGFIFVPK-SPRYVSPE-QAREI-ASAVPK-VKVVGVFVNESIEEILEIAEE--LGLDAVQL 81 (208)
T ss_pred CCCCHHHHHHHHHcCCCEEEEEEcCC-CCCcCCHH-HHHHH-HHhCCC-CCEEEEECCCCHHHHHHHHHh--cCCCEEEE
Confidence 555555456777888864 33222 33332211 11111 111111 333333445566665555432 25799999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
|-- .+++++.++ +...++||+-=++.....+ .........-++.+.+-....++. +
T Consensus 82 HG~----------------e~~~~~~~l----~~~~~~~v~kai~v~~~~~---~~~~~~~~~~~d~~LlDa~~~~~~-G 137 (208)
T COG0135 82 HGD----------------EDPEYIDQL----KEELGVPVIKAISVSEEGD---LELAAREEGPVDAILLDAKVPGLP-G 137 (208)
T ss_pred CCC----------------CCHHHHHHH----HhhcCCceEEEEEeCCccc---hhhhhhccCCccEEEEcCCCCCCC-C
Confidence 921 345554444 4444677766665543322 112223445588888866554322 3
Q ss_pred CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 269 KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 269 ~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++| ..||+.+... ....|++..||++ ++.+.++++.....+|=+.+|.=.+|
T Consensus 138 GtG~~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 138 GTGQTFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred CCCcEECHHHhccc--cccCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCC
Confidence 333 5799988776 4678899999996 89999999974449999998887777
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.19 Score=49.76 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=54.8
Q ss_pred HHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcE
Q 013813 214 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 289 (436)
Q Consensus 214 ~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPV 289 (436)
..-++.+++..+ .++.|=++ +. +-++.+.++|+|+|-+-. ...+.++++.+.+ .+||
T Consensus 165 ~~av~~~r~~~~~~~~Igvev~---t~----eea~~A~~~gaDyI~ld~------------~~~e~lk~~v~~~~~~ipi 225 (265)
T TIGR00078 165 EKAVKRARAAAPFALKIEVEVE---SL----EEAEEAAEAGADIIMLDN------------MKPEEIKEAVQLLKGRVLL 225 (265)
T ss_pred HHHHHHHHHhCCCCCeEEEEeC---CH----HHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhcCCCcE
Confidence 344555665553 33433322 22 335566789999997732 2225566666544 3899
Q ss_pred EEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 290 LANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 290 ianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
++.|||+ .+.+.++.+ +|+|++.+|.
T Consensus 226 ~AsGGI~-~~ni~~~a~-~Gvd~Isvga 251 (265)
T TIGR00078 226 EASGGIT-LDNLEEYAE-TGVDVISSGA 251 (265)
T ss_pred EEECCCC-HHHHHHHHH-cCCCEEEeCH
Confidence 9999995 899999887 5999999953
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.1 Score=49.39 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=63.5
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
++..=+|. .+.+++.++++.+.+.|+..|-|+-|+.. .++.|+.+++...--+++.|.|.|.++++++++
T Consensus 9 ~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t~~---------a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~ 78 (196)
T PF01081_consen 9 KIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRTPN---------ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIA 78 (196)
T ss_dssp SEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTSTT---------HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHH
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCCcc---------HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHH
Confidence 34444444 45689999999999999999999888632 257888888776556899999999999999999
Q ss_pred hcCcceeeeehHHhhCCccchhhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
. ||+.++.= --||.+.+..+
T Consensus 79 a-GA~FivSP---~~~~~v~~~~~ 98 (196)
T PF01081_consen 79 A-GAQFIVSP---GFDPEVIEYAR 98 (196)
T ss_dssp H-T-SEEEES---S--HHHHHHHH
T ss_pred c-CCCEEECC---CCCHHHHHHHH
Confidence 7 99998753 25666665544
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.13 Score=49.13 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=69.3
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
++..=+|. .+.++..++++.+.+.|+..|-|.-++.. .++.|+++++...--+++.|-|.|.++++++++
T Consensus 9 ~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~t~~---------a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~ 78 (204)
T TIGR01182 9 KIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLRTPV---------ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVD 78 (204)
T ss_pred CEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCCCcc---------HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 44444554 46788999999999999999999877632 357788998766546799999999999999999
Q ss_pred hcCcceeeeehHHhhCCccchhhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
. |++.++.= + .||.+....+
T Consensus 79 a-GA~FivsP-~--~~~~v~~~~~ 98 (204)
T TIGR01182 79 A-GAQFIVSP-G--LTPELAKHAQ 98 (204)
T ss_pred c-CCCEEECC-C--CCHHHHHHHH
Confidence 6 99998532 2 2777776554
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.77 Score=45.94 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=70.0
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cCC--C----------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VFP--N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg~--~----------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
.+.+..+++++..+. .+++|-.=+- +|. + ..++.+..+.+++.|+|.+.|.-.|..+.+......|
T Consensus 110 eNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ld 188 (282)
T TIGR01858 110 QNVKLVKEVVDFCHR-QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLD 188 (282)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccC
Confidence 355666667666543 3555544431 110 0 1233444455668999999875555444443334689
Q ss_pred HHHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 275 WNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
|+.+++|++.+++|++.-||=..+ ++++++.+. |+.-|=|++.+
T Consensus 189 f~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l 233 (282)
T TIGR01858 189 FDRLAEIREVVDVPLVLHGASDVPDEDVRRTIEL-GICKVNVATEL 233 (282)
T ss_pred HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHc-CCeEEEeCcHH
Confidence 999999999999999988865444 556667764 88888777655
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.2 Score=45.47 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=89.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~ 236 (436)
|+...+...+++.+.+.++.. .|+..+-+..|= .| ++++.-.+.|+++++.++ +.+.+-..-+|
T Consensus 80 p~~~tv~~~~~e~~~~~~~~~-~G~~~~KvKVg~---------~~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~w 145 (327)
T PRK02901 80 PVNATVPAVDAAQVPEVLARF-PGCRTAKVKVAE---------PG----QTLADDVARVNAVRDALGPDGRVRVDANGGW 145 (327)
T ss_pred EeeEEeCCCCHHHHHHHHHHh-CCCCEEEEEECC---------CC----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 334333444666554444322 477777777651 12 234455566677777763 45555555578
Q ss_pred ChhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 237 NLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 237 ~~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.++++.+++.+ ++.++.+| ++. . .+++..+.+++.+++||.+.=.+.+.+|..++++..++|.+++
T Consensus 146 s~~~Ai~~~~~L~e~~~l~~i-------EqP--~---~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 146 SVDEAVAAARALDADGPLEYV-------EQP--C---ATVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred CHHHHHHHHHHhhhccCceEE-------ecC--C---CCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 999999999999 67777776 221 1 1367788899999999988888999999999999888898875
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
-
T Consensus 214 k 214 (327)
T PRK02901 214 K 214 (327)
T ss_pred C
Confidence 4
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.3 Score=51.19 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.++.+.++.+.++|+|.|+|-.-... +..-++.++.+++.. +++ +..|+|.|.++++.+++. |+|+|.+|
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~~a-GaD~I~vG 222 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLISV-GADCLKVG 222 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHHHc-CCCEEEEC
Confidence 34677889999999999988432211 123357788998875 555 567899999999999986 99999887
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.2 Score=47.72 Aligned_cols=90 Identities=18% Similarity=0.307 Sum_probs=69.3
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
++..=+|. .+.+++.++++.+.+.|+..|-|.-++.. ..+.|+++++..+--+++.|-|.|.++++++++
T Consensus 5 ~vv~Vir~-~~~~~a~~ia~al~~gGi~~iEit~~tp~---------a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~ 74 (201)
T PRK06015 5 PVIPVLLI-DDVEHAVPLARALAAGGLPAIEITLRTPA---------ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAK 74 (201)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---------HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHH
Confidence 44444553 56789999999999999999999877632 357888888776556899999999999999999
Q ss_pred hcCcceeeeehHHhhCCccchhhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
. |++.++.= -.||.+.+..+
T Consensus 75 a-GA~FivSP---~~~~~vi~~a~ 94 (201)
T PRK06015 75 A-GSRFIVSP---GTTQELLAAAN 94 (201)
T ss_pred c-CCCEEECC---CCCHHHHHHHH
Confidence 7 99998742 25666665444
|
|
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.77 Score=47.60 Aligned_cols=142 Identities=14% Similarity=0.161 Sum_probs=90.2
Q ss_pred CCCCCEEEEec---CCCHHHHHHHHHHH-cCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--c
Q 013813 155 KEDRPLFVQFC---ANDPEILLNAARRV-EPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--V 226 (436)
Q Consensus 155 ~~e~plivQL~---g~d~e~~~~AA~~v-~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--i 226 (436)
-.++||+..+. |-+++.+++.+..+ ..|+|+|-- |+|.+.- ..+.++.+.+.+.++...+.++ +
T Consensus 123 v~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 123 IPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPF--------APFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccC--------CCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 45889886653 77999999999654 568899833 2432221 1122344555666666665554 4
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEc----cC-------
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLAN----GN------- 294 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVian----GG------- 294 (436)
++.+- +..+.++..+-++.++++|++.+-|-.-+ +-|..+..+++... +||.+- |-
T Consensus 195 ~y~~N--ita~~~em~~ra~~a~~~Ga~~vMv~~~~----------~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~ 262 (364)
T cd08210 195 LYAPN--VTGPPTQLLERARFAKEAGAGGVLIAPGL----------TGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDG 262 (364)
T ss_pred eEEEe--cCCCHHHHHHHHHHHHHcCCCEEEeeccc----------chHHHHHHHHhcCCCcEEEEccccccccccCCCc
Confidence 55555 43446688899999999999998775332 22456667777767 888665 22
Q ss_pred CCCHHHHHHHHHhcCcceeeee
Q 013813 295 VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIG 316 (436)
|...--..++.+..|+|.++++
T Consensus 263 is~~~~~~kl~RlaGad~~~~~ 284 (364)
T cd08210 263 ISHALLFGTLFRLAGADAVIFP 284 (364)
T ss_pred ccHHHHHHHHHHHhCCCEEEeC
Confidence 2222235666777799987654
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.23 Score=47.05 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=75.7
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
.+++.=|.+.++++..+.++.+ +.|+..||+.+-.|.. .++++.+++.. ++-|.+. .
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a------------------~~~I~~l~~~~p~~~vGAG--T- 66 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNA------------------LEAIEALRKEFPDLLVGAG--T- 66 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTH------------------HHHHHHHHHHHTTSEEEEE--S-
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccH------------------HHHHHHHHHHCCCCeeEEE--e-
Confidence 4678888999999999999765 5689999999865531 22333333322 1222222 1
Q ss_pred CChhhHHHHHHHHHHcCccEE-----------------------------------------EeccCcccccCCCCCccC
Q 013813 236 PNLQDTIKYAKMLEDAGCSLL-----------------------------------------AVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I-----------------------------------------~VHgRt~~~~~~~~g~ad 274 (436)
..+ .+-++.+.++|++++ -+..-.. .-
T Consensus 67 --V~~-~e~a~~a~~aGA~FivSP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~---------~G 134 (196)
T PF01081_consen 67 --VLT-AEQAEAAIAAGAQFIVSPGFDPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGA---------LG 134 (196)
T ss_dssp ----S-HHHHHHHHHHT-SEEEESS--HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTT---------TT
T ss_pred --ccC-HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchh---------cC
Confidence 111 112333344444444 3322111 11
Q ss_pred -HHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 275 -WNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 275 -~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
..+++.++.- .+++++..|||.- +.+.++++. |+.+|.+|+.+..+
T Consensus 135 G~~~ik~l~~p~p~~~~~ptGGV~~-~N~~~~l~a-g~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 135 GPSYIKALRGPFPDLPFMPTGGVNP-DNLAEYLKA-GAVAVGGGSWLFPK 182 (196)
T ss_dssp HHHHHHHHHTTTTT-EEEEBSS--T-TTHHHHHTS-TTBSEEEESGGGSH
T ss_pred cHHHHHHHhccCCCCeEEEcCCCCH-HHHHHHHhC-CCEEEEECchhcCH
Confidence 4778888874 4799999999985 889999986 99999999766543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.087 Score=55.99 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+-++.+.++|++.|.|..-... ...-++.|+.+++. .++||++ |+|.|.++++.+++. |||+|-+|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~------~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~a-Gad~i~vg 293 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGH------SIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDA-GADGLRVG 293 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCc------HhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHh-CCCEEEEC
Confidence 4556678889999999988432211 02346889999987 5899988 999999999999986 99999765
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.33 Score=46.56 Aligned_cols=99 Identities=27% Similarity=0.366 Sum_probs=72.1
Q ss_pred HHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC
Q 013813 215 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 294 (436)
Q Consensus 215 eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG 294 (436)
++++.+.+. ++..=+| +.+.+++.++++.+.+.|++.|-|.-++. ...+.|+.+++...--+++.|-
T Consensus 7 ~~~~~l~~~---~~iaV~r-~~~~~~a~~i~~al~~~Gi~~iEitl~~~---------~~~~~I~~l~~~~p~~~IGAGT 73 (212)
T PRK05718 7 SIEEILRAG---PVVPVIV-INKLEDAVPLAKALVAGGLPVLEVTLRTP---------AALEAIRLIAKEVPEALIGAGT 73 (212)
T ss_pred HHHHHHHHC---CEEEEEE-cCCHHHHHHHHHHHHHcCCCEEEEecCCc---------cHHHHHHHHHHHCCCCEEEEee
Confidence 444444433 4444455 45678999999999999999999985543 2357788888766556899999
Q ss_pred CCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 295 VRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
|.+.++++.+++. |++.++.= -.||.+.+..+
T Consensus 74 Vl~~~~a~~a~~a-GA~FivsP---~~~~~vi~~a~ 105 (212)
T PRK05718 74 VLNPEQLAQAIEA-GAQFIVSP---GLTPPLLKAAQ 105 (212)
T ss_pred ccCHHHHHHHHHc-CCCEEECC---CCCHHHHHHHH
Confidence 9999999999997 99988742 24556655444
|
|
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.41 Score=47.22 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=88.5
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 155 KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.+-|++--+. ++++...+++ .+|.+.| |+.++++.+++. ++. .++.||-+|=-.
T Consensus 79 ~~GlpvvTeV~--~~~~~~~v~~----~~DilQI--------------gArn~rn~~LL~----a~g-~t~kpV~lKrG~ 133 (264)
T PRK05198 79 TFGVPVLTDVH--EPEQAAPVAE----VVDVLQI--------------PAFLCRQTDLLV----AAA-KTGKVVNIKKGQ 133 (264)
T ss_pred HHCCceEEEeC--CHHHHHHHHh----hCcEEEE--------------CchhcchHHHHH----HHh-ccCCeEEecCCC
Confidence 34667777653 4555444443 4677765 677788875554 443 458999999655
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHHHHhhCCCcEEEc---------------cCCCCH
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLAN---------------GNVRHM 298 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ik~~~~iPVian---------------GGI~s~ 298 (436)
+.+.++....++.+.+.|-..|.+.-|-.. . ++. ...|+..+..+++ .++|||.- ||-++.
T Consensus 134 ~~t~~e~~~aaeyi~~~Gn~~vilcERG~t-f-~y~r~~~D~~~vp~~k~-~~lPVi~DpSHsvq~pg~~~~~s~G~r~~ 210 (264)
T PRK05198 134 FLAPWDMKNVVDKVREAGNDKIILCERGTS-F-GYNNLVVDMRGLPIMRE-TGAPVIFDATHSVQLPGGQGGSSGGQREF 210 (264)
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-c-CCCCeeechhhhHHHhh-CCCCEEEeCCccccCCCCCCCCCCCcHHH
Confidence 678889888999999999999988666442 2 332 2368888888887 45999863 444432
Q ss_pred --HHHHHHHHhcCcceeeee
Q 013813 299 --EDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 299 --eda~~~l~~tGaDgVmIG 316 (436)
.-++..+. .|+||+||=
T Consensus 211 v~~la~AAvA-~GadGl~iE 229 (264)
T PRK05198 211 VPVLARAAVA-VGVAGLFIE 229 (264)
T ss_pred HHHHHHHHHH-cCCCEEEEE
Confidence 22234444 499999986
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.31 Score=50.76 Aligned_cols=43 Identities=14% Similarity=0.418 Sum_probs=37.6
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.|+.+++..+.||+. .||.+.+|++.+++. |+|+|.++
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~~~-Gvd~I~Vs 273 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAVRF-GADGIVVS 273 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHHhC-CCCEEEEC
Confidence 46899999999999999775 567999999999986 99999875
|
|
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.78 Score=48.73 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=85.7
Q ss_pred CHHHHHHHH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++++-| +.++ .||..+-|-.|-+ +++.-.+.|+++++.+ ++.+.|-..-+|+.++++.+
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAWSLDEAIAL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 577776555 4454 4999998875421 1234456677777665 34566665557888999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccC----HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad----~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
++.+++. +.+| ++... +-| ++..+++++.+++||.+.=.+.+.+++.++++...+|.++
T Consensus 245 ~~~Le~~-~~~i-------EePv~---~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~ 307 (441)
T TIGR03247 245 CKDLKGV-LAYA-------EDPCG---AEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPL 307 (441)
T ss_pred HHHhhhh-hceE-------eCCCC---cccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEe
Confidence 9999986 5543 22111 123 7888999999999999887899999999999987788755
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.25 Score=49.44 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG 260 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg 260 (436)
..+.+.+.++.|...+++||++.+-.|.+..+....++.+.++|+.+|.+-.
T Consensus 62 ~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iED 113 (285)
T TIGR02320 62 SWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIED 113 (285)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 3455666788888889999999998886667778889999999999999943
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.14 Score=52.96 Aligned_cols=89 Identities=21% Similarity=0.355 Sum_probs=63.2
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc-------Cccc----------------------cc----------
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRD----------------------EK---------- 266 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg-------Rt~~----------------------~~---------- 266 (436)
.|...-+-...+.+.+.+++++++++|+++|.||- |.++ +.
T Consensus 110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 189 (356)
T PF01070_consen 110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE 189 (356)
T ss_dssp SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence 56666655556677788899999999999998842 1000 00
Q ss_pred ----------------CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 267 ----------------DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 267 ----------------~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.......+|+.|+.+++..++|||.=|= .+.+|++.+.+. |+|+|.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv-~~~~da~~~~~~-G~~~i~vs 253 (356)
T PF01070_consen 190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV-LSPEDAKRAVDA-GVDGIDVS 253 (356)
T ss_dssp CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE--SHHHHHHHHHT-T-SEEEEE
T ss_pred cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec-ccHHHHHHHHhc-CCCEEEec
Confidence 0001135799999999999999998775 889999999986 99999887
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.46 Score=46.81 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=75.7
Q ss_pred HHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc-EEEEeccC---CChhhHHHHH-HHHH
Q 013813 176 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKIRVF---PNLQDTIKYA-KMLE 249 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP-VsVKiRlg---~~~~d~~~~a-k~le 249 (436)
|++++ .|+|.|= .|.....+.-| |-....-..+.+...+++|++.++.| |++-+-.| .+.+++++.+ +.++
T Consensus 25 A~l~e~aG~d~i~--vGds~~~~~lG-~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~ 101 (254)
T cd06557 25 AKLADEAGVDVIL--VGDSLGMVVLG-YDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMK 101 (254)
T ss_pred HHHHHHcCCCEEE--ECHHHHHHHcC-CCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHH
Confidence 34444 4999994 46554444322 44444556788888888999899999 77776423 2345555554 4455
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-----------EccCCC----CHHHHHHHH------Hhc
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNVR----HMEDVQKCL------EET 308 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-----------anGGI~----s~eda~~~l------~~t 308 (436)
++|+++|.+-+.. -..+.|+.+++ .++||+ ..||.. +.+.+++++ ++.
T Consensus 102 ~aGa~aVkiEd~~----------~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~A 170 (254)
T cd06557 102 EAGADAVKLEGGA----------EVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEA 170 (254)
T ss_pred HhCCeEEEEcCcH----------HHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHC
Confidence 6999999987641 01233444443 378888 566542 343233332 234
Q ss_pred Ccceeee
Q 013813 309 GCEGVLS 315 (436)
Q Consensus 309 GaDgVmI 315 (436)
|||++.+
T Consensus 171 GA~~i~l 177 (254)
T cd06557 171 GAFALVL 177 (254)
T ss_pred CCCEEEE
Confidence 9998875
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.1 Score=55.96 Aligned_cols=68 Identities=38% Similarity=0.481 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHcCccEEEe---ccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 239 QDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+..+.++.|.++|++.|.+ ||+.. .-.+.++.|++. +++|||+ |.+.|.+.++.+++. |||+|-
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~---------~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~-G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQV---------KMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEA-GANIIK 292 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcH---------HHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHh-CCCEEE
Confidence 35567888999999999988 44331 235788999986 4899999 889999999999986 999987
Q ss_pred eeh
Q 013813 315 SAE 317 (436)
Q Consensus 315 IGR 317 (436)
||=
T Consensus 293 vg~ 295 (475)
T TIGR01303 293 VGV 295 (475)
T ss_pred ECC
Confidence 653
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.2 Score=44.70 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cC-C-C----------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VF-P-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg-~-~----------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
++.+..+++++..+. .++.|-.=+- +| . + ..++.+..+.+++.|+|.+.|.-.|..+.|......|
T Consensus 112 eNi~~T~evv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld 190 (286)
T PRK12738 112 ENVKLVKSVVDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKID 190 (286)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCC
Confidence 455667777776553 3555444321 11 0 0 1244455555668899999875555444443334689
Q ss_pred HHHHHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHH
Q 013813 275 WNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRga 319 (436)
|+.+++|++.+++|++.-||=.. .++++++.+. |+.-|=|++.+
T Consensus 191 fd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~-GI~KiNi~T~l 235 (286)
T PRK12738 191 FQRLAEIREVVDVPLVLHGASDVPDEFVRRTIEL-GVTKVNVATEL 235 (286)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEeCcHH
Confidence 99999999999999998886433 4667777774 88888777654
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.33 Score=48.18 Aligned_cols=89 Identities=18% Similarity=0.322 Sum_probs=55.4
Q ss_pred HHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC----CCc
Q 013813 215 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL----RIP 288 (436)
Q Consensus 215 eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~----~iP 288 (436)
+-++.+++..+ .++.|-++ +.++ +..+.++|+|+|-+-... .+.++++.+.+ ++|
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~---t~ee----a~~A~~~gaD~I~ld~~~------------~e~l~~~v~~i~~~~~i~ 229 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVE---TLEE----AEEALEAGADIIMLDNMS------------PEELKEAVKLLKGLPRVL 229 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecC---CHHH----HHHHHHcCCCEEEECCCC------------HHHHHHHHHHhccCCCeE
Confidence 44566666553 33433321 2233 344457899999884322 13344444433 789
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|.+.|||+ .+.+.++.+ +|+|+|.+|.-...-|+
T Consensus 230 i~asGGIt-~~ni~~~a~-~Gad~Isvgal~~s~~~ 263 (269)
T cd01568 230 LEASGGIT-LENIRAYAE-TGVDVISTGALTHSAPA 263 (269)
T ss_pred EEEECCCC-HHHHHHHHH-cCCCEEEEcHHHcCCCc
Confidence 99999997 788998887 59999999754444433
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.2 Score=44.61 Aligned_cols=110 Identities=23% Similarity=0.286 Sum_probs=69.3
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cC-C--C---------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VF-P--N---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg-~--~---------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
.+.+..+++++..+. .++.|-.=+- +| . + ..++.+..+.+++.|+|.+.|.-.|..+.+......|
T Consensus 112 eNi~~T~~vv~~Ah~-~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld 190 (284)
T PRK12737 112 ENIAIVKEVVEFCHR-YDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLD 190 (284)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCC
Confidence 345566666666543 3555444321 11 0 0 1234454555667999999774444443333333579
Q ss_pred HHHHHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHH
Q 013813 275 WNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRga 319 (436)
|+.+++|++.+++|++.-||=.. .++++++++. |+.-|=|++.+
T Consensus 191 ~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~-Gi~KiNi~T~l 235 (284)
T PRK12737 191 FERLAEIREKVSIPLVLHGASGVPDEDVKKAISL-GICKVNVATEL 235 (284)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHC-CCeEEEeCcHH
Confidence 99999999999999998886444 4566777764 88888888764
|
|
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=94.50 E-value=1 Score=44.47 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=36.4
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
..||+.+....-....|++..|||. ++.+.++++..+..||=+.+|.=..|-
T Consensus 185 t~DW~~l~~~~~~~~~p~iLAGGL~-peNV~~ai~~~~P~GVDVsSGVE~~pG 236 (256)
T PLN02363 185 GFNWQNFKLPSVRSRNGWLLAGGLT-PENVHEAVSLLKPTGVDVSSGICGPDG 236 (256)
T ss_pred ccCHHHhcccccccCCCEEEECCCC-HHHHHHHHHhcCCcEEEeCCcccCCCC
Confidence 3578765411101246899999996 788888888778888888877755554
|
|
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=4.6 Score=38.47 Aligned_cols=174 Identities=10% Similarity=0.112 Sum_probs=91.6
Q ss_pred CCCcHHHHHHHHHhCCCeEEeCc--ccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEe
Q 013813 112 DNSELPFRMLCRRYGAEAAYTPM--LHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDIN 189 (436)
Q Consensus 112 gvtd~~fR~l~~~~Ga~l~~Tem--isa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN 189 (436)
|.|+..=-.+|.+.|+|++--=+ -|.+.+. .+..+ ......+.....+.=+...+++++.+.++ +.+.|.|.||
T Consensus 7 Git~~eda~~~~~~GaD~iGfIf~~~SpR~V~-~~~a~-~i~~~~~~~~~~VgVf~~~~~~~i~~~~~--~~~~d~vQLH 82 (207)
T PRK13958 7 GFTTIKDVTAASQLPIDAIGFIHYEKSKRHQT-ITQIK-KLASAVPNHIDKVCVVVNPDLTTIEHILS--NTSINTIQLH 82 (207)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCcccCC-HHHHH-HHHHhCCCCCCEEEEEeCCCHHHHHHHHH--hCCCCEEEEC
Confidence 56666555788889998632111 1222221 11111 11121122222222234566777666554 2367999999
Q ss_pred cCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 190 LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 190 ~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
-. .++++ ++.++... .+++.--++... . ....++.... .+|++.+.... .. .+
T Consensus 83 G~----------------e~~~~----~~~l~~~~~~~~iika~~~~~--~-~~~~~~~~~~-~~d~~LlDs~~-~~-~G 136 (207)
T PRK13958 83 GT----------------ESIDF----IQEIKKKYSSIKIIKALPADE--N-IIQNINKYKG-FVDLFIIDTPS-VS-YG 136 (207)
T ss_pred CC----------------CCHHH----HHHHhhcCCCceEEEEecccH--H-HHHHHHHHHh-hCCEEEEcCCC-CC-CC
Confidence 31 22333 33444332 355544444421 1 2222333322 47888887632 22 23
Q ss_pred CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH-hcCcceeeeehHH
Q 013813 269 KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE-ETGCEGVLSAESL 319 (436)
Q Consensus 269 ~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~-~tGaDgVmIGRga 319 (436)
++| ..||+.++.+ ...|++..|||+ ++.+.+++. ..+..||=+.+|.
T Consensus 137 GtG~~~dw~~~~~~---~~~p~iLAGGL~-peNV~~a~~~~~~p~gVDvsSGV 185 (207)
T PRK13958 137 GTGQTYDWTILKHI---KDIPYLIAGGIN-SENIQTVEQLKLSHQGYDIASGI 185 (207)
T ss_pred cCCcEeChHHhhhc---cCCCEEEECCCC-HHHHHHHHhcCCCCCEEEccccc
Confidence 444 5799988765 346999999996 677777664 3466777776665
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.4 Score=44.15 Aligned_cols=111 Identities=22% Similarity=0.301 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cC-C--C---------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VF-P--N---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg-~--~---------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
.|-+..+++++..+. .++.|-.=+- +| . + ..++.+..+.+++.|+|.+.|.-.|..+.+......|
T Consensus 112 eNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld 190 (284)
T PRK09195 112 QNISLVKEVVDFCHR-FDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLD 190 (284)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCC
Confidence 355566667666543 3555544331 11 0 0 1234444455568899999774444433333333589
Q ss_pred HHHHHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHHh
Q 013813 275 WNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRgal 320 (436)
|+.+++|++.+++|++.-||=.. .++++++++. |+.-|=|++.+.
T Consensus 191 ~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l~ 236 (284)
T PRK09195 191 FDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKL-GICKVNVATELK 236 (284)
T ss_pred HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHc-CCeEEEeCcHHH
Confidence 99999999999999998875333 4667777775 898888887664
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.82 Score=43.56 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-----CChhhH
Q 013813 168 DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-----PNLQDT 241 (436)
Q Consensus 168 d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-----~~~~d~ 241 (436)
++++..+.++.+. .|+.++.++ . .+.++++++.+++||....+-. .-....
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~ 77 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPT 77 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEecCCCCCCceECCC
Confidence 4566777776654 478888863 0 3566777777889987444311 001112
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+.++.+.++|+|.|++-..... .. .+....++++.+++..+++++. ++.+.+++.++.+. |+|.+.++
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~-~p--~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~~-G~d~i~~~ 146 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRP-RP--DGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQKL-GFDFIGTT 146 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-CC--CCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHc-CCCEEEcC
Confidence 35678889999998877544211 00 0011235566666535677774 67899999887765 99998764
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.36 Score=48.16 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.++|+|+|-+- ....+.++++.+.. ++|+++.|||+ .+.+.++.+ +|+|+|.+|.-.
T Consensus 202 a~eA~~~gaD~I~LD------------~~~~e~l~~~v~~~~~~i~leAsGGIt-~~ni~~~a~-tGvD~Isvg~lt 264 (277)
T PRK05742 202 LRQALAAGADIVMLD------------ELSLDDMREAVRLTAGRAKLEASGGIN-ESTLRVIAE-TGVDYISIGAMT 264 (277)
T ss_pred HHHHHHcCCCEEEEC------------CCCHHHHHHHHHHhCCCCcEEEECCCC-HHHHHHHHH-cCCCEEEEChhh
Confidence 555668999999662 12345566666654 89999999995 899999887 699999999643
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.5 Score=42.10 Aligned_cols=136 Identities=21% Similarity=0.286 Sum_probs=77.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
-.+..+++..+...+.+-++.+. .|++.|.+.. ..+.| ..+..+--++++++++.++.++.|-+=+
T Consensus 8 ~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~-------~d~~f----~~~~~~g~~~~~~l~~~~~~~~~vhlmv-- 74 (229)
T PLN02334 8 AIIAPSILSADFANLAEEAKRVLDAGADWLHVDV-------MDGHF----VPNLTIGPPVVKALRKHTDAPLDCHLMV-- 74 (229)
T ss_pred ceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEec-------ccCCc----CCccccCHHHHHHHHhcCCCcEEEEecc--
Confidence 34677888888777887776665 4899988853 11111 1111111155666666666665554322
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCc-ccccCCCCCccCHHHHHHHHhhCCCcEEEccCC-CCHHHHHHHHHhcCcceee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRT-RDEKDGKKFRADWNAIKAVKNALRIPVLANGNV-RHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt-~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI-~s~eda~~~l~~tGaDgVm 314 (436)
.++.++.+.+.++|+|+|++|... .. ......++.+++. ++-+-..-.- +..+.+++.+...|+|.|+
T Consensus 75 --~~p~d~~~~~~~~gad~v~vH~~q~~~-------d~~~~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~ 144 (229)
T PLN02334 75 --TNPEDYVPDFAKAGASIFTFHIEQAST-------IHLHRLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVL 144 (229)
T ss_pred --CCHHHHHHHHHHcCCCEEEEeeccccc-------hhHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEE
Confidence 234456667788999999999872 11 1113455666553 3322222222 2355566666532399998
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+|
T Consensus 145 ~~ 146 (229)
T PLN02334 145 VM 146 (229)
T ss_pred EE
Confidence 87
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.61 Score=48.59 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=50.6
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+-...+.++|+|.|++..-- +. .-..+++|+.||+.. ++.|| .|+|-|.+++++++.. |||++=||-|
T Consensus 254 ~rl~ll~~aGvdvviLDSSq-----Gn-S~~qiemik~iK~~yP~l~Vi-aGNVVT~~qa~nLI~a-GaDgLrVGMG 322 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQ-----GN-SIYQLEMIKYIKETYPDLQII-AGNVVTKEQAANLIAA-GADGLRVGMG 322 (503)
T ss_pred HHHHHhhhcCCcEEEEecCC-----Cc-chhHHHHHHHHHhhCCCceee-ccceeeHHHHHHHHHc-cCceeEeccc
Confidence 34566889999999885321 11 135689999999875 45555 6888899999999987 9999776644
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.42 Score=45.69 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=60.5
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+.++++.+++.+.+.|++.|-|.-|+. ...+.|+.+++...--+|+.|=|-+++++.++.+. |++.++
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp---------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~a-Ga~fiV 90 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTP---------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAA-GAQFIV 90 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC---------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHc-CCCEEE
Confidence 4678999999999999999999988874 33688999999877679999999999999999986 999875
|
|
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.2 Score=44.24 Aligned_cols=133 Identities=14% Similarity=0.022 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHH
Q 013813 167 NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 245 (436)
Q Consensus 167 ~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~a 245 (436)
=|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.++ +|.+-+- ..+..++++++
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~G----------stGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg-~~~~~~ai~~a 84 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAG----------TTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG-SLNLEESIELA 84 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcc----------cCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC-cCCHHHHHHHH
Confidence 467777777765 466999999883 3555555566666777776666554 3555532 24578999999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-E-----ccCCCCHHHHHHHHHh-cCcceeee
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLEE-TGCEGVLS 315 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-a-----nGGI~s~eda~~~l~~-tGaDgVmI 315 (436)
+.+++.|+|++.+..-...... +...-.++.+.+.+ ++||+ + .|---+++.+.++.+. ..+-||=-
T Consensus 85 ~~a~~~Gad~v~v~~P~y~~~~--~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgiK~ 157 (279)
T cd00953 85 RAAKSFGIYAIASLPPYYFPGI--PEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKD 157 (279)
T ss_pred HHHHHcCCCEEEEeCCcCCCCC--CHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEEEEe
Confidence 9999999999987543211000 00122355667776 78876 3 3555678888887753 24444433
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.17 Score=50.17 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=47.2
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.++|+|+|-+-. ...+.++++.+.. ++||.+.|||+ .+.+.++.+ +|+|+|.+|.-.
T Consensus 195 a~~A~~~gaDyI~ld~------------~~~e~l~~~~~~~~~~ipi~AiGGI~-~~ni~~~a~-~Gvd~Iav~sl~ 257 (268)
T cd01572 195 LKEALEAGADIIMLDN------------MSPEELREAVALLKGRVLLEASGGIT-LENIRAYAE-TGVDYISVGALT 257 (268)
T ss_pred HHHHHHcCCCEEEECC------------cCHHHHHHHHHHcCCCCcEEEECCCC-HHHHHHHHH-cCCCEEEEEeee
Confidence 4556689999997732 2246677777665 59999999995 899999887 599999999643
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.2 Score=44.44 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC--ccEEEeccC--ccccc---CCCCCccCHHHHHHHH
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGR--TRDEK---DGKKFRADWNAIKAVK 282 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG--~d~I~VHgR--t~~~~---~~~~g~ad~~~i~~ik 282 (436)
.+...+.+....+..+.|+.+=+. |.+.++..+.++.++++| +|+|.+--. ..... .......-++.++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK 153 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 344444444444555778888863 567788889999999874 899988322 11110 0110012256677888
Q ss_pred hhCCCcEEEc--cCCCCHHHHHHHHHhcCcceeeee
Q 013813 283 NALRIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 283 ~~~~iPVian--GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+.+++||++= .++.+..++.+.+++.|+|++.+.
T Consensus 154 ~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 154 DKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 8778888743 344445555566767799999874
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.55 Score=44.93 Aligned_cols=138 Identities=17% Similarity=0.263 Sum_probs=84.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+.++.+|+.|.+.+++.+.|+.+..++..+ -.--|... .-.+.++.+++. ++++.+-. -.
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~--~iKIP~T~---------------~gl~ai~~L~~~-gi~v~~T~--V~ 110 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNV--VVKIPVTE---------------DGLKAIKKLSEE-GIKTNVTA--IF 110 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCE--EEEEcCcH---------------hHHHHHHHHHHc-CCceeeEE--ec
Confidence 478999999999999999998776543321 11223321 113344444433 44544431 12
Q ss_pred ChhhHHHHHHHHHHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhh---CCCc-EEEccCCCCHHHHHHHHHhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA---LRIP-VLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~---~~iP-VianGGI~s~eda~~~l~~tGaD 311 (436)
+... +..+.++|+++|..+ ||..+. +. .-++.++++.+. .+++ -+...+++++.++.+++.. |||
T Consensus 111 s~~Q----a~~Aa~AGA~yvsP~vgR~~~~--g~---dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~-Gad 180 (211)
T cd00956 111 SAAQ----ALLAAKAGATYVSPFVGRIDDL--GG---DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALA-GAD 180 (211)
T ss_pred CHHH----HHHHHHcCCCEEEEecChHhhc--CC---CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHc-CCC
Confidence 2232 455667999998664 564432 22 224555555443 3444 4678889999999998886 999
Q ss_pred eeeeehHHhhCCccchhhh
Q 013813 312 GVLSAESLLENPALFAGFR 330 (436)
Q Consensus 312 gVmIGRgal~nP~lf~~i~ 330 (436)
.|-+. |.+++++.
T Consensus 181 ~vTv~------~~vl~~l~ 193 (211)
T cd00956 181 AITLP------PDVLEQLL 193 (211)
T ss_pred EEEeC------HHHHHHHh
Confidence 99988 55555543
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.91 Score=43.18 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 276 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 276 ~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+++.++++.. +.|+-..=||.++++.+..-.- +|||++|..+..
T Consensus 196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv--aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV--ADGVVVGSKIVK 240 (268)
T ss_pred HHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh--ccceEecHHHHH
Confidence 4567888887 7899888899999999987664 999999987653
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.49 Score=46.97 Aligned_cols=126 Identities=20% Similarity=0.178 Sum_probs=77.7
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ ++||.+-+- +.+.++++++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~G----------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~i~~ 88 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLG----------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEAIEL 88 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESS----------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHHHHH
Confidence 55677777764 467999998883 234333334455556666655544 578888843 2367899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEE 307 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~ 307 (436)
++.++++|+|++.+..-.... .+..--.++++.|.+.+++||+ +| |---+++.+.++.+.
T Consensus 89 a~~a~~~Gad~v~v~~P~~~~---~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~ 154 (289)
T PF00701_consen 89 ARHAQDAGADAVLVIPPYYFK---PSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKI 154 (289)
T ss_dssp HHHHHHTT-SEEEEEESTSSS---CCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTS
T ss_pred HHHHhhcCceEEEEecccccc---chhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcC
Confidence 999999999999775332110 1001124667778878888875 33 445566666665543
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=94.05 E-value=1 Score=42.12 Aligned_cols=129 Identities=20% Similarity=0.182 Sum_probs=77.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~ 238 (436)
|+|-|=..++++..+.++.+..|.+.||+... .. ...-.++++.+++.. +..+.+-+.+- +.
T Consensus 2 l~~alD~~~~~~a~~~~~~l~~~v~~iev~~~--l~--------------~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~ 64 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKVADYVDIIEIGTP--LI--------------KNEGIEAVKEMKEAFPDRKVLADLKTM-DA 64 (206)
T ss_pred eEEEecCCCHHHHHHHHHHcccCeeEEEeCCH--HH--------------HHhCHHHHHHHHHHCCCCEEEEEEeec-cc
Confidence 55666678889999999888668899999521 10 011134455555442 33343332221 21
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc-cCCCC-HHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-GNVRH-MEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian-GGI~s-~eda~~~l~~tGaDgVmIG 316 (436)
.. ..++.+.++|+|+|++|+-... ..--+.+..+++ .+++++.. -+..+ .++++.+.+. |+|.|.+.
T Consensus 65 ~~--~~~~~~~~~Gad~i~vh~~~~~-------~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~-g~d~v~~~ 133 (206)
T TIGR03128 65 GE--YEAEQAFAAGADIVTVLGVADD-------ATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKEL-GADYIGVH 133 (206)
T ss_pred hH--HHHHHHHHcCCCEEEEeccCCH-------HHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHc-CCCEEEEc
Confidence 21 1367788999999999975421 011244555554 58888764 24444 4778877775 99999774
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.87 Score=45.25 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=77.5
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. +..|+++|=+| |..|-+..-..+.-.++++.+.+.+ .+||.+-+- ..+..+++++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~----------GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~i~~ 88 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTREAIHA 88 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----------ccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC-CccHHHHHHH
Confidence 55667766754 46699999988 3345444445666666666655544 478888742 2356899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-E-----ccCCCCHHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLE 306 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-a-----nGGI~s~eda~~~l~ 306 (436)
++.++++|+|++.+..-.... .+...-.++.+.+.+.. ||+ + .|---+++.+.++.+
T Consensus 89 a~~a~~~Gadav~~~~P~y~~---~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 89 TEQGFAVGMHAALHINPYYGK---TSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HHHHHHcCCCEEEEcCCccCC---CCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 999999999999886543210 00011245566666654 775 2 344456777776654
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=94.01 E-value=7.2 Score=38.86 Aligned_cols=189 Identities=16% Similarity=0.094 Sum_probs=105.8
Q ss_pred CCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhh----hhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCc
Q 013813 113 NSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRN----EEFATCKEDRPLFVQFCANDPEILLNAARRVEP-YCD 184 (436)
Q Consensus 113 vtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~----~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D 184 (436)
+-...+|++++.+ |++.++.---+.....-+...+. ...+......|++++++. +.++..+.++.+++ |+|
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 3346677777655 77654422112221111111111 112233456899999976 77888888877765 999
Q ss_pred EEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH-cCccEEEeccCcc
Q 013813 185 YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED-AGCSLLAVHGRTR 263 (436)
Q Consensus 185 ~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~-aG~d~I~VHgRt~ 263 (436)
+|-+= .|. |- ..+.+-+.+-.+.|.+.+++||.+=-+.+.+.. .++.+.+.+ .+ .| .|- +
T Consensus 97 ~v~~~--pP~-------y~---~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~--~~~l~~L~~~~p--ni--vgi-K 157 (289)
T cd00951 97 GILLL--PPY-------LT---EAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLT--ADSLARLAERCP--NL--VGF-K 157 (289)
T ss_pred EEEEC--CCC-------CC---CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCC--HHHHHHHHhcCC--CE--EEE-E
Confidence 99773 233 11 124577888888888888999998876654322 334444443 32 11 111 1
Q ss_pred cccCCCCCccCHHHHHHHHhhCCCc-EEEccCCCCHHH-HHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 264 DEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMED-VQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 264 ~~~~~~~g~ad~~~i~~ik~~~~iP-VianGGI~s~ed-a~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+ . ..|+..+.++.+..+-. .+.+|. .+.+. +...+.. |++|++.|-+.+ -|.++.++-
T Consensus 158 d---s---~~d~~~~~~~~~~~~~~~~v~~G~-~~~d~~~~~~l~~-Ga~G~is~~~n~-~P~~~~~l~ 217 (289)
T cd00951 158 D---G---VGDIELMRRIVAKLGDRLLYLGGL-PTAEVFALAYLAM-GVPTYSSAVFNF-VPEIALAFY 217 (289)
T ss_pred e---C---CCCHHHHHHHHHhcCCCeEEEeCC-CcchHhHHHHHHC-CCCEEEechhhh-hHHHHHHHH
Confidence 1 1 23566677776654322 344442 22222 4455665 999998886654 477776654
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.75 Score=46.26 Aligned_cols=147 Identities=12% Similarity=0.172 Sum_probs=83.3
Q ss_pred HHHc-CCCcEEEEec-CCCc-hhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcC
Q 013813 177 RRVE-PYCDYVDINL-GCPQ-RIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAG 252 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~-GCP~-~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG 252 (436)
++++ .||++|=+-- |+-. ..-..|. | +-..+.+.+.++.|.+.+++||++-+-.|. +..++...++.++++|
T Consensus 31 ri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aG 106 (292)
T PRK11320 31 LLAERAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAG 106 (292)
T ss_pred HHHHHcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 4454 4899887752 2221 0001110 1 234566778888888899999999998875 5567778899999999
Q ss_pred ccEEEeccCcc----cccCCCCCccCHHHHHHHHhhC----CCcEEEccCCCC-----HHHHHH----HHHhcCcceeee
Q 013813 253 CSLLAVHGRTR----DEKDGKKFRADWNAIKAVKNAL----RIPVLANGNVRH-----MEDVQK----CLEETGCEGVLS 315 (436)
Q Consensus 253 ~d~I~VHgRt~----~~~~~~~g~ad~~~i~~ik~~~----~iPVianGGI~s-----~eda~~----~l~~tGaDgVmI 315 (436)
+.+|+|-.... ....+...-.--+++.+|+... +.+++.|..... .+++.+ +.+ .|||+|++
T Consensus 107 aagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~e-AGAD~ifi 185 (292)
T PRK11320 107 AAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVE-AGADMIFP 185 (292)
T ss_pred CeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHH-cCCCEEEe
Confidence 99999954331 1111110001113445544322 344555443332 444432 233 49999998
Q ss_pred ehHHhhCCccchhhh
Q 013813 316 AESLLENPALFAGFR 330 (436)
Q Consensus 316 GRgal~nP~lf~~i~ 330 (436)
-- +.++.-++++.
T Consensus 186 ~~--~~~~~~i~~~~ 198 (292)
T PRK11320 186 EA--MTELEMYRRFA 198 (292)
T ss_pred cC--CCCHHHHHHHH
Confidence 52 45555444443
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.39 Score=45.77 Aligned_cols=87 Identities=18% Similarity=0.317 Sum_probs=66.8
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC-cEEEccCCCCHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i-PVianGGI~s~eda~~~l 305 (436)
++..=+|. .+.++..++++.+.+.|+..|-|.-++.. ..+.++.+++.... -+++.|.|.+.++++.++
T Consensus 11 ~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---------~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 11 PLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNSPD---------PFDSIAALVKALGDRALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---------HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHH
Confidence 44444554 46688999999999999999998765432 24578888877654 479999999999999999
Q ss_pred HhcCcceeeeehHHhhCCccch
Q 013813 306 EETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~nP~lf~ 327 (436)
+. |+|+++.+- .|+.+..
T Consensus 81 ~a-GA~fivsp~---~~~~v~~ 98 (206)
T PRK09140 81 DA-GGRLIVTPN---TDPEVIR 98 (206)
T ss_pred Hc-CCCEEECCC---CCHHHHH
Confidence 97 999999873 4444443
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=93.96 E-value=5.3 Score=39.27 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=90.2
Q ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 154 CKEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 154 ~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
.....|+++++.+++.++..+.++.+++ |+|+|-+-. |. |. ....+.+.+-.+++.+.+++||.+--
T Consensus 63 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~-------y~---~~~~~~~~~~~~~ia~~~~~pi~iYn 130 (281)
T cd00408 63 VAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP--PY-------YN---KPSQEGIVAHFKAVADASDLPVILYN 130 (281)
T ss_pred hCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC--Cc-------CC---CCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3457899999999999988888887765 999999853 33 11 13457788888888888899998874
Q ss_pred ccCC-ChhhHHHHHHHHHHcC-ccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcC
Q 013813 233 RVFP-NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 233 Rlg~-~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tG 309 (436)
-... ...-..++.+.+.+.+ +.+|- .. ..|+..+.++.+..+ --.+.+|. -..+...+.. |
T Consensus 131 ~P~~tg~~l~~~~~~~L~~~~~v~giK---------~s---~~d~~~~~~~~~~~~~~~~v~~G~---d~~~~~~l~~-G 194 (281)
T cd00408 131 IPGRTGVDLSPETIARLAEHPNIVGIK---------DS---SGDLDRLTRLIALLGPDFAVLSGD---DDLLLPALAL-G 194 (281)
T ss_pred CccccCCCCCHHHHHHHhcCCCEEEEE---------eC---CCCHHHHHHHHHhcCCCeEEEEcc---hHHHHHHHHc-C
Confidence 3321 1111133444444321 22221 11 235666677766542 22344554 2445555654 9
Q ss_pred cceeeeehHHhhCCccchhhh
Q 013813 310 CEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 310 aDgVmIGRgal~nP~lf~~i~ 330 (436)
++|.+.|-+.+ -|+++.++-
T Consensus 195 ~~G~i~~~~n~-~p~~~~~~~ 214 (281)
T cd00408 195 ADGAISGAANV-APKLAVALY 214 (281)
T ss_pred CCEEEehHHhh-CHHHHHHHH
Confidence 99999886543 366665544
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.59 Score=44.82 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=67.5
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC---CcEEEccCCCCHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQK 303 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~---iPVianGGI~s~eda~~ 303 (436)
++..=+|. .+.+++..+++.+.+.|+..+-|.-|+.. ..+.|+++++..+ --+++.|-|.|.+++++
T Consensus 14 ~vi~vir~-~~~~~a~~~~~al~~~Gi~~iEit~~~~~---------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~ 83 (213)
T PRK06552 14 GVVAVVRG-ESKEEALKISLAVIKGGIKAIEVTYTNPF---------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARL 83 (213)
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCCcc---------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHH
Confidence 44444554 46788999999999999999999877632 3578899987653 24799999999999999
Q ss_pred HHHhcCcceeeeehHHhhCCccchhhh
Q 013813 304 CLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+++. |+++++. =-.||.+.+-.+
T Consensus 84 a~~a-GA~Fivs---P~~~~~v~~~~~ 106 (213)
T PRK06552 84 AILA-GAQFIVS---PSFNRETAKICN 106 (213)
T ss_pred HHHc-CCCEEEC---CCCCHHHHHHHH
Confidence 9997 9999982 134555554433
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.68 Score=44.09 Aligned_cols=125 Identities=21% Similarity=0.252 Sum_probs=75.4
Q ss_pred CCHHHHHHHH---HHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHH
Q 013813 167 NDPEILLNAA---RRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 167 ~d~e~~~~AA---~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~ 242 (436)
.+.+++.... +.+ +.|+|+|-+-+--+.. -=|.+.+.+++++.. +.|++. .|..+...+..
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg-----------~iD~~~~~~Li~~a~---~~~~tF-HRAfD~~~d~~ 130 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDG-----------EIDEEALEELIEAAG---GMPVTF-HRAFDEVPDPE 130 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTS-----------SB-HHHHHHHHHHHT---TSEEEE--GGGGGSSTHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCC-----------CcCHHHHHHHHHhcC---CCeEEE-eCcHHHhCCHH
Confidence 4455555444 433 4589998876432321 136678888888765 678887 56654444556
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+-.+.+.+.|++.|--+|..... .-..+.++++.+.. ++-|+..|||+. +.+.++++.+|+..+
T Consensus 131 ~al~~L~~lG~~rVLTSGg~~~a------~~g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 131 EALEQLIELGFDRVLTSGGAPTA------LEGIENLKELVEQAKGRIEIMPGGGVRA-ENVPELVEETGVREI 196 (201)
T ss_dssp HHHHHHHHHT-SEEEESTTSSST------TTCHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHHHHHT-SEE
T ss_pred HHHHHHHhcCCCEEECCCCCCCH------HHHHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHHHhhCCeEE
Confidence 66777888999999777665322 12356666665543 688999999985 778888888888765
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.31 Score=45.51 Aligned_cols=89 Identities=19% Similarity=0.345 Sum_probs=66.5
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
|+..=+|. .+.++..++++.+.++|++.|.+.-++. ...+.++.+++..+-..++.|.|.+.+++..+++
T Consensus 5 ~~~~i~r~-~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~ 74 (190)
T cd00452 5 PLVAVLRG-DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIA 74 (190)
T ss_pred cEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 34444444 4568888999999999999999875532 2356788888876545789999999999999998
Q ss_pred hcCcceeeeehHHhhCCccchhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i 329 (436)
. |+|+|+.+- .++.+....
T Consensus 75 ~-Ga~~i~~p~---~~~~~~~~~ 93 (190)
T cd00452 75 A-GAQFIVSPG---LDPEVVKAA 93 (190)
T ss_pred c-CCCEEEcCC---CCHHHHHHH
Confidence 6 999998763 345555433
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.3 Score=44.21 Aligned_cols=200 Identities=20% Similarity=0.204 Sum_probs=118.1
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccc---hhhccChhh-hhhhh-----hccCCCCCEEEEe-
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHS---RIFTESEKY-RNEEF-----ATCKEDRPLFVQF- 164 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa---~~l~~~~~~-~~~~~-----~~~~~e~plivQL- 164 (436)
.|-.-+-++.+++.| |+=|..--+++.+.|-..+||---.. .++...... ....+ -+...+.|++|-+
T Consensus 9 ~fR~l~~~~~~~~~p--g~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~d 86 (289)
T COG2513 9 AFRALHASGDPLVLP--GAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDID 86 (289)
T ss_pred HHHHHHhCCCCEEec--CCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEecc
Confidence 355455555455544 45566666788889988877543221 111111111 00000 0224678999887
Q ss_pred --cCCCHHHHHHHHHHH-cCCCcEEEEec--C---CCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 165 --CANDPEILLNAARRV-EPYCDYVDINL--G---CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 165 --~g~d~e~~~~AA~~v-~~g~D~IdLN~--G---CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
+|+ +...++.++.+ +.|+.+|.|-- + |-+- -|-.+..-.+.+.+| +++++.. +.++.+=-|..
T Consensus 87 tGfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~------~gk~l~~~~e~v~rI-kAa~~a~~~~~fvi~ARTd 158 (289)
T COG2513 87 TGFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHL------PGKELVSIDEMVDRI-KAAVEARRDPDFVIIARTD 158 (289)
T ss_pred CCCCc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCC------CCCCcCCHHHHHHHH-HHHHHhccCCCeEEEeehH
Confidence 444 77788877655 45888888852 1 3221 133444433444444 4444443 55666665652
Q ss_pred ----CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc----cC--CCCHHHHHHHH
Q 013813 236 ----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN----GN--VRHMEDVQKCL 305 (436)
Q Consensus 236 ----~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian----GG--I~s~eda~~~l 305 (436)
...+++++=++...++|+|.|-.++.+ +.+.++++.+.+++|+.+| |+ ..|.+++
T Consensus 159 a~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-----------~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L---- 223 (289)
T COG2513 159 ALLVEGLDDAIERAQAYVEAGADAIFPEALT-----------DLEEIRAFAEAVPVPLPANITEFGKTPLLTVAEL---- 223 (289)
T ss_pred HHHhccHHHHHHHHHHHHHcCCcEEccccCC-----------CHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHH----
Confidence 236788888999999999999887664 3577889999888665544 33 4554433
Q ss_pred HhcCcceeeeehHH
Q 013813 306 EETGCEGVLSAESL 319 (436)
Q Consensus 306 ~~tGaDgVmIGRga 319 (436)
+.-|+..|..|-.+
T Consensus 224 ~~~Gv~~V~~~~~~ 237 (289)
T COG2513 224 AELGVKRVSYGLTA 237 (289)
T ss_pred HhcCceEEEECcHH
Confidence 33599999988443
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.74 E-value=2.3 Score=42.61 Aligned_cols=110 Identities=20% Similarity=0.336 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cCC---C---------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VFP---N---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg~---~---------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
.|-+..+++++..+ ..++.|-.=+- +|. . ..++.+..+.+++.|+|.+.|.-.|..+.+......|
T Consensus 112 eNi~~T~~vv~~Ah-~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld 190 (284)
T PRK12857 112 ENIALTKKVVEIAH-AVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLD 190 (284)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCC
Confidence 35566667776654 23555444321 110 0 1234444445568899999774444433333333579
Q ss_pred HHHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 275 WNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
|+.+++|++.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 191 ~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~T~~ 235 (284)
T PRK12857 191 FDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISL-GVRKVNIDTNI 235 (284)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEeCcHH
Confidence 999999999999999988864444 566777764 88888777654
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.88 Score=45.14 Aligned_cols=126 Identities=20% Similarity=0.256 Sum_probs=73.5
Q ss_pred HHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc-EEEEeccC---CChhhHHHH-HHHHH
Q 013813 176 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKIRVF---PNLQDTIKY-AKMLE 249 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP-VsVKiRlg---~~~~d~~~~-ak~le 249 (436)
|++++ .|+|.|= .|....++.-| |-....-..+.+...+++|++.++.| |++-+-.+ .+.++.++. .+.++
T Consensus 28 Arl~e~aG~d~i~--vGds~~~~~lG-~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~ 104 (264)
T PRK00311 28 AKLFDEAGVDVIL--VGDSLGMVVLG-YDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMK 104 (264)
T ss_pred HHHHHHcCCCEEE--ECHHHHHHHcC-CCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHH
Confidence 44554 4899994 35444433322 44444456677888888888888875 77776433 233454444 45556
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-----------EccCC----CCHHHHHHHH------Hhc
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNV----RHMEDVQKCL------EET 308 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-----------anGGI----~s~eda~~~l------~~t 308 (436)
++|+++|.+-+.. ...+.|+.+.+ .+|||+ ..||. ++.+.+.+++ ++.
T Consensus 105 ~aGa~aVkiEdg~----------~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eA 173 (264)
T PRK00311 105 EAGAHAVKLEGGE----------EVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEA 173 (264)
T ss_pred HhCCeEEEEcCcH----------HHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHC
Confidence 6999999987631 11234555543 389987 44543 2333333332 234
Q ss_pred Ccceeee
Q 013813 309 GCEGVLS 315 (436)
Q Consensus 309 GaDgVmI 315 (436)
|||+|.+
T Consensus 174 GA~~i~l 180 (264)
T PRK00311 174 GAFALVL 180 (264)
T ss_pred CCCEEEE
Confidence 9998876
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.94 Score=45.40 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=82.5
Q ss_pred HHHc-CCCcEEEEecCCCchhhhcCccc-ccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcCc
Q 013813 177 RRVE-PYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~~~~~~~~G-s~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG~ 253 (436)
++++ .||++|=+--.+ ... .. |+- ..++ ..+.+.+.++.|.+.+++||++-+-.|. +..++...++.++++|+
T Consensus 27 ri~e~aGf~Ai~~sg~~-~a~-~l-G~pD~g~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~ 102 (285)
T TIGR02317 27 LLAERAGFEAIYLSGAA-VAA-SL-GLPDLGIT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGA 102 (285)
T ss_pred HHHHHcCCCEEEEcHHH-HHH-hC-CCCCCCCC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence 3443 489888876322 110 01 111 1133 5666777788888889999999998874 45667778999999999
Q ss_pred cEEEeccCcccccCC---CCCccC-HHHHHHHHh---hC-CCcEEEccCCCC-----HHHHHHH---HHhcCcceeeeeh
Q 013813 254 SLLAVHGRTRDEKDG---KKFRAD-WNAIKAVKN---AL-RIPVLANGNVRH-----MEDVQKC---LEETGCEGVLSAE 317 (436)
Q Consensus 254 d~I~VHgRt~~~~~~---~~g~ad-~~~i~~ik~---~~-~iPVianGGI~s-----~eda~~~---l~~tGaDgVmIGR 317 (436)
.+|+|-..+..-+.+ .+.-.+ -+++.+|+. .. +.+++.|..... .+++.+- ..+.|||+|++-
T Consensus 103 agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~- 181 (285)
T TIGR02317 103 AAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPE- 181 (285)
T ss_pred eEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeC-
Confidence 999996543211111 110111 134444443 22 345555554332 4444322 123499999984
Q ss_pred HHhhCCccchhhh
Q 013813 318 SLLENPALFAGFR 330 (436)
Q Consensus 318 gal~nP~lf~~i~ 330 (436)
| +.++...+++.
T Consensus 182 g-~~~~e~i~~~~ 193 (285)
T TIGR02317 182 A-LTSLEEFRQFA 193 (285)
T ss_pred C-CCCHHHHHHHH
Confidence 2 34444444443
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.5 Score=42.17 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cC-CC---------hhhHHHHHHHHHHcCccEEEeccCcccccCCC-CCccCH
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VF-PN---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADW 275 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg-~~---------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~-~g~ad~ 275 (436)
.+.+..+++++..+.. ++.|-.=+- ++ .. ..++.+..+.+++.|+|.|.|.-.|..+.+.. ....||
T Consensus 107 eNi~~t~~vv~~ah~~-gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~ 185 (276)
T cd00947 107 ENVAKTKEVVELAHAY-GVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDF 185 (276)
T ss_pred HHHHHHHHHHHHHHHc-CCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCH
Confidence 4555666777665533 555544321 11 10 12344444555678999997643333332222 335899
Q ss_pred HHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 276 NAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 276 ~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
+.+++|.+.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 186 ~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l 229 (276)
T cd00947 186 DRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKL-GVCKININTDL 229 (276)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEeChHH
Confidence 99999999999999988876665 557787774 88888887765
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.22 Score=53.80 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC-cEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i-PVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.+..+.++.|.++|+|.|.|. +... .+ ..-.+.|+++++..+. -.+..|.|-|.++++.+++. |||+|.+|.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd--~a~g---~~-~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a-GAd~I~vg~ 313 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCID--SSEG---YS-EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA-GADFVKVGI 313 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeec--Cccc---cc-HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc-CCCEEEECC
Confidence 456778899999999999885 2211 10 1225788899987654 35788999999999999986 999998864
Q ss_pred H
Q 013813 318 S 318 (436)
Q Consensus 318 g 318 (436)
|
T Consensus 314 g 314 (502)
T PRK07107 314 G 314 (502)
T ss_pred C
Confidence 3
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=93.68 E-value=1 Score=43.95 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=89.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg 235 (436)
.|++ =+...|.-. |++++ .|+|.|=+--..- ...- ||-....-..+.+...+++|++.+. .||++-+-.|
T Consensus 12 ~~i~-~~~ayD~~s----A~i~e~aG~dai~v~~s~~--a~~~-G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G 83 (240)
T cd06556 12 ERFA-TLTAYDYSM----AKQFADAGLNVMLVGDSQG--MTVA-GYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFG 83 (240)
T ss_pred CeEE-EecCCCHHH----HHHHHHcCCCEEEEChHHH--HHhc-CCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 3443 355555432 34444 3888887753211 1111 1222222356778888888888885 7999998876
Q ss_pred C--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC---------------CH
Q 013813 236 P--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR---------------HM 298 (436)
Q Consensus 236 ~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~---------------s~ 298 (436)
. +.+++.+.++.+.++|+++|.+-+.. -..+.++.+++. .+||++==|.. +.
T Consensus 84 ~g~~~~~~~~~~~~l~~aGa~gv~iED~~----------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~ 152 (240)
T cd06556 84 AYGAPTAAFELAKTFMRAGAAGVKIEGGE----------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGD 152 (240)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcCcH----------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCH
Confidence 4 33677888999999999999997632 012345555544 47777655541 12
Q ss_pred HHHHHHH------HhcCcceeeeehHHhhCCccchhhh
Q 013813 299 EDVQKCL------EETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 299 eda~~~l------~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+++++++ ++.|||+|.+= +. ++...+++.
T Consensus 153 ~~~~~ai~Ra~ay~~AGAd~i~~e-~~--~~e~~~~i~ 187 (240)
T cd06556 153 EAGEQLIADALAYAPAGADLIVME-CV--PVELAKQIT 187 (240)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEc-CC--CHHHHHHHH
Confidence 3333332 23599999884 32 555555444
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.7 Score=44.81 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCccEEEeccCcccccCCC--CC---ccCHHHHHHHHhhC-CCcEEEccCCCCH----------------
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KF---RADWNAIKAVKNAL-RIPVLANGNVRHM---------------- 298 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~~~~--~g---~ad~~~i~~ik~~~-~iPVianGGI~s~---------------- 298 (436)
+.+..+.+++.|+|.+.|.-.|..+.+.. +. ..||+.+++|++.+ ++|++.-||=..+
T Consensus 173 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~ 252 (347)
T TIGR01521 173 PEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKE 252 (347)
T ss_pred HHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccc
Confidence 34444555688999997643333332221 11 27999999999999 7999999987665
Q ss_pred ------HHHHHHHHhcCcceeeeehHH
Q 013813 299 ------EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 299 ------eda~~~l~~tGaDgVmIGRga 319 (436)
++++++++. |+.-|=|++.+
T Consensus 253 ~~g~p~e~i~~ai~~-GI~KVNi~Tdl 278 (347)
T TIGR01521 253 TYGVPVEEIVEGIKY-GVRKVNIDTDL 278 (347)
T ss_pred cCCCCHHHHHHHHHC-CCeeEEeChHH
Confidence 666666664 66666666544
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.77 Score=49.51 Aligned_cols=48 Identities=25% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
..+|.+.+++|+|.||||++.... .++.+..+|+.+++.+++||+|-.
T Consensus 168 ~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT 215 (499)
T TIGR00284 168 EGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADT 215 (499)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeC
Confidence 444456678899999999876422 345689999999888889999984
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.6 Score=44.92 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCH----------------
Q 013813 241 TIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHM---------------- 298 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~---------------- 298 (436)
+.+..+.+++.|+|.|.| ||-............+|+.+++|++.+ ++|++.-||=..+
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~ 254 (347)
T PRK13399 175 PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKE 254 (347)
T ss_pred HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccc
Confidence 444445556789999965 555443100000127899999999999 7999999987665
Q ss_pred ------HHHHHHHHhcCcceeeeehH
Q 013813 299 ------EDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 299 ------eda~~~l~~tGaDgVmIGRg 318 (436)
++++++++. |+.-|=|++.
T Consensus 255 ~~g~~~e~~~kai~~-GI~KINi~Td 279 (347)
T PRK13399 255 TYGVPVEEIQRGIKH-GVRKVNIDTD 279 (347)
T ss_pred cCCCCHHHHHHHHHC-CCeEEEeChH
Confidence 555666654 6665555544
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.82 Score=44.19 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=66.2
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC----CCcEEEccCCCCHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL----RIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~----~iPVianGGI~s~eda~ 302 (436)
+|..=+|. .+.+++.++++.+.+.|+..|-|.-|+.. ..+.|+.+++.. .--+++.|-|.|.++++
T Consensus 16 ~vi~Vvr~-~~~~~a~~~~~al~~gGi~~iEiT~~tp~---------a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 16 GMVPVFYH-ADVEVAKKVIKACYDGGARVFEFTNRGDF---------AHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCc---------HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 33333553 56789999999999999999999887743 246666665322 22389999999999999
Q ss_pred HHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 303 KCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.+++. |++.++.= -.||.+++..+
T Consensus 86 ~a~~a-GA~FiVsP---~~~~~v~~~~~ 109 (222)
T PRK07114 86 LYIQL-GANFIVTP---LFNPDIAKVCN 109 (222)
T ss_pred HHHHc-CCCEEECC---CCCHHHHHHHH
Confidence 99987 99998742 25677766554
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=93.56 E-value=1.6 Score=40.55 Aligned_cols=129 Identities=22% Similarity=0.190 Sum_probs=82.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRlg~~~ 238 (436)
+++-|=..++++..+.++.+.++++.|+++. |. ... +| .+.++.+++. .++|+.+-.-.. +.
T Consensus 3 ~~~a~d~~~~~~~~~~~~~l~~~i~~ieig~--~~--~~~--~g----------~~~i~~i~~~~~~~~i~~~~~v~-~~ 65 (202)
T cd04726 3 LQVALDLLDLEEALELAKKVPDGVDIIEAGT--PL--IKS--EG----------MEAVRALREAFPDKIIVADLKTA-DA 65 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhcCCEEEcCC--HH--HHH--hC----------HHHHHHHHHHCCCCEEEEEEEec-cc
Confidence 4555655678888888887776799999952 22 111 22 3556666654 467877632221 11
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc-cCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian-GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
. ..+++.+.++|+++|++|+.... ...-+.++.+++ .+++++.. =+..|+.++.+++. .|+|.|.++
T Consensus 66 ~--~~~~~~~~~aGad~i~~h~~~~~-------~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~-~~~d~v~~~ 133 (202)
T cd04726 66 G--ALEAEMAFKAGADIVTVLGAAPL-------STIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLK-LGVDIVILH 133 (202)
T ss_pred c--HHHHHHHHhcCCCEEEEEeeCCH-------HHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHH-CCCCEEEEc
Confidence 1 23568888999999999976421 011234455554 57777764 78889999988666 499999885
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.8 Score=41.56 Aligned_cols=144 Identities=16% Similarity=0.210 Sum_probs=86.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
++.++++-|.-.|+..+..-+ ..+.|+|.+-+|..+ ..+.+.+.++++++ .+.-+.|-+-..
T Consensus 55 ~~~~v~~DLK~~Di~~~v~~~-~~~~Gad~vTvH~~a----------------~~~~i~~~~~~~~~-~g~~~~V~llts 116 (216)
T PRK13306 55 PDKIIVADTKIADAGKILAKM-AFEAGADWVTVICAA----------------HIPTIKAALKVAKE-FNGEIQIELYGN 116 (216)
T ss_pred CCCEEEEEEeecCCcHHHHHH-HHHCCCCEEEEeCCC----------------CHHHHHHHHHHHHH-cCCEEEEEECCC
Confidence 467899999999988776644 557799999999422 24556667776654 243444443333
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+.++ ++.+.+.|++.+.+|--...+..+.. .+...+.++++++ .+..+...|||+ ++.+....+ .|+|.++
T Consensus 117 ~~~~~----l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~-~~~~i~V~gGI~-~~~~~~~~~-~~ad~~V 189 (216)
T PRK13306 117 WTWEQ----AQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD-MGFKVSVTGGLV-VEDLKLFKG-IPVKTFI 189 (216)
T ss_pred CCHHH----HHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc-CCCeEEEcCCCC-HhhHHHHhc-CCCCEEE
Confidence 33332 23455677776666633222221110 1223344555543 244589999998 344544444 4999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+||++...++
T Consensus 190 vGr~I~~a~d 199 (216)
T PRK13306 190 AGRAIRGAAD 199 (216)
T ss_pred ECCcccCCCC
Confidence 9999877666
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=93.48 E-value=3.2 Score=41.70 Aligned_cols=205 Identities=12% Similarity=0.108 Sum_probs=115.1
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCccc---chhhccChhh-hhhhh-----hccCCCCCEEEEe--
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLH---SRIFTESEKY-RNEEF-----ATCKEDRPLFVQF-- 164 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temis---a~~l~~~~~~-~~~~~-----~~~~~e~plivQL-- 164 (436)
+-+.|.++.++++|=+ -|.-=-+++.+.|.+.+||--.. +.++-..... ....+ -....+.|+++=+
T Consensus 7 lr~~l~~~~~~~~pg~--~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~ 84 (290)
T TIGR02321 7 LRAALDSGRLFTAMAA--HNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDT 84 (290)
T ss_pred HHHHHhCCCCEEeccc--cCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCC
Confidence 4455667778888754 44333367777898888865321 1122111100 00000 0123468999876
Q ss_pred -cCCCHHHHHHHHHHH-cCCCcEEEEecCC-CchhhhcCcc--cccccCChHHHHHHHHHHhcc-cCccEEEEecc----
Q 013813 165 -CANDPEILLNAARRV-EPYCDYVDINLGC-PQRIARRGNY--GAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV---- 234 (436)
Q Consensus 165 -~g~d~e~~~~AA~~v-~~g~D~IdLN~GC-P~~~~~~~~~--Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRl---- 234 (436)
+|+.+ ...+.++.+ +.|+.+|.|.-.. |.. .+.. |..-+-+++...+-|++++++ .+.++.|=-|.
T Consensus 85 GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~---cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~ 160 (290)
T TIGR02321 85 GFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKD---TSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALI 160 (290)
T ss_pred CCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcc---cccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 34555 577777655 5699999997643 322 1111 211123444444444544443 35556665565
Q ss_pred -CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEcc---CCCCHHHHHHHHHhc
Q 013813 235 -FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANG---NVRHMEDVQKCLEET 308 (436)
Q Consensus 235 -g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianG---GI~s~eda~~~l~~t 308 (436)
+...+++++=++...++|+|.|-+++... +.+.+.++.+.++ +||+... ...+.+++. +.+
T Consensus 161 ~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~----------~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~---~lg 227 (290)
T TIGR02321 161 AGLGQQEAVRRGQAYEEAGADAILIHSRQK----------TPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIA---ALS 227 (290)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecCCCC----------CHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHH---Hhc
Confidence 23457888889999999999999987421 2356778777765 5776543 333444433 332
Q ss_pred CcceeeeehHH
Q 013813 309 GCEGVLSAESL 319 (436)
Q Consensus 309 GaDgVmIGRga 319 (436)
++..|..|-.+
T Consensus 228 ~~~~v~~g~~~ 238 (290)
T TIGR02321 228 KVGIVIYGNHA 238 (290)
T ss_pred CCcEEEEChHH
Confidence 26778777444
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=2.6 Score=42.94 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHhcccCccEEEEecc-C--C------C--hhhHHHHHHHHHHcCccEEEeccCcccccCCC-----CCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRV-F--P------N--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFR 272 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRl-g--~------~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~-----~g~ 272 (436)
+-+..+++++..+ ..++.|-.=+-. + . . ..++.+..+.+++.|+|.+.+.-.|..+.+.. ...
T Consensus 124 NI~~T~evv~~Ah-~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~ 202 (321)
T PRK07084 124 NVALTKKVVEYAH-QFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPP 202 (321)
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCc
Confidence 4455666666554 335555443211 1 0 0 12344444555678999997744443333221 235
Q ss_pred cCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcC
Q 013813 273 ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 273 ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tG 309 (436)
.||+.+++|++.+ ++|++.-||=..+++..+.+...|
T Consensus 203 Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g 240 (321)
T PRK07084 203 LRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYG 240 (321)
T ss_pred cCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhc
Confidence 7999999999999 799999998766544444343333
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.5 Score=43.36 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=40.4
Q ss_pred CCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 167 NDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 167 ~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
.|.+...+-| +.+++|+|.||||++-+ ....++.+..+|+.+++.+++||++..
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT 76 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDS 76 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 3555555555 56788999999998732 134577899999999888899999883
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.9 Score=43.14 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=83.2
Q ss_pred HHHHc-CCCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC-hhhHHHHHHHHHHcC
Q 013813 176 ARRVE-PYCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAG 252 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~-~~d~~~~ak~le~aG 252 (436)
|++++ .||.+|=+.- |+-...-..| .| .-..+.+.+.++.|.+.+++||+|.+-.|.. ..+....++.++++|
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD-~~---~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG 106 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPD-LG---ITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAG 106 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCc-cc---cccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcC
Confidence 34454 4899888862 2211111111 11 1236778888888999999999999888754 456677788899999
Q ss_pred ccEEEeccCcc----cccCCCCCccCH-HHHHHHH---hhC-CCcEEE--------ccCCCCHHHHH----HHHHhcCcc
Q 013813 253 CSLLAVHGRTR----DEKDGKKFRADW-NAIKAVK---NAL-RIPVLA--------NGNVRHMEDVQ----KCLEETGCE 311 (436)
Q Consensus 253 ~d~I~VHgRt~----~~~~~~~g~ad~-~~i~~ik---~~~-~iPVia--------nGGI~s~eda~----~~l~~tGaD 311 (436)
+.+|+|-.-.. ....+ +.-++. +.+.+|+ +.. +.+++. .|| .+++. .+.+ .|||
T Consensus 107 ~agi~iEDq~~pk~cgh~~g-k~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~---ld~AI~Ra~AY~e-AGAD 181 (289)
T COG2513 107 AAGIHIEDQVGPKRCGHLPG-KELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEG---LDDAIERAQAYVE-AGAD 181 (289)
T ss_pred cceeeeeecccchhcCCCCC-CCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhcc---HHHHHHHHHHHHH-cCCc
Confidence 99998843222 11111 111222 3344444 433 334433 344 34443 3444 4999
Q ss_pred eeeeehHHhhCCccchhhhh
Q 013813 312 GVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 312 gVmIGRgal~nP~lf~~i~~ 331 (436)
+|.. ..+.++..|+++..
T Consensus 182 ~if~--~al~~~e~i~~f~~ 199 (289)
T COG2513 182 AIFP--EALTDLEEIRAFAE 199 (289)
T ss_pred EEcc--ccCCCHHHHHHHHH
Confidence 8863 45566776666553
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.09 E-value=2 Score=44.24 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCH---------------
Q 013813 240 DTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHM--------------- 298 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~--------------- 298 (436)
++.+..+.+++.|+|.|.| ||.............||+.+++|++.+ ++|++.-||=..+
T Consensus 174 ~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~ 253 (347)
T PRK09196 174 DPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMP 253 (347)
T ss_pred CHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCcc
Confidence 3455555667899999966 655543100000127999999999999 7999988876543
Q ss_pred -------HHHHHHHHhcCcceeeeehHH
Q 013813 299 -------EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 299 -------eda~~~l~~tGaDgVmIGRga 319 (436)
++++++++. |+.-|=|++.+
T Consensus 254 ~~~G~~~e~i~~ai~~-GI~KINi~Tdl 280 (347)
T PRK09196 254 ETYGVPVEEIQEGIKH-GVRKVNIDTDL 280 (347)
T ss_pred ccCCCCHHHHHHHHHC-CCceEEeChHH
Confidence 556666664 66666666544
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.07 E-value=5.3 Score=41.89 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=83.7
Q ss_pred EEecCCC--HHHHHHHH-H-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc---CccEEEEecc
Q 013813 162 VQFCAND--PEILLNAA-R-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKIRV 234 (436)
Q Consensus 162 vQL~g~d--~e~~~~AA-~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~---~iPVsVKiRl 234 (436)
.+|.|.. +++..+.- + .++.|.|.+-|= + -+||++-+..-++++++.- ..-++.-+..
T Consensus 87 QNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiF----------D-----AlND~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 87 QNLVGYRHYADDVVEKFVEKAAENGIDVFRIF----------D-----ALNDVRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred CccccccCCchHHHHHHHHHHHhcCCcEEEec----------h-----hccchhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 3455533 56655544 3 356687776653 1 3678888888888876542 2222222222
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc----cCCCCHHHHHHHHHhcCc
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN----GNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian----GGI~s~eda~~~l~~tGa 310 (436)
-.+.+..+++++.+.+.|+|.|++-.-..- .+....++.|+.+|+.+++||..- -|+.... ..++++. |+
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDmaGl----ltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~-ylkAvEA-Gv 225 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMAGL----LTPYEAYELVKAIKKELPVPVELHTHATSGMAEMT-YLKAVEA-GV 225 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeeccccc----CChHHHHHHHHHHHHhcCCeeEEecccccchHHHH-HHHHHHh-Cc
Confidence 346677889999999999999998543221 111245899999999999999754 4665443 3344555 89
Q ss_pred ceee
Q 013813 311 EGVL 314 (436)
Q Consensus 311 DgVm 314 (436)
|++=
T Consensus 226 D~iD 229 (472)
T COG5016 226 DGID 229 (472)
T ss_pred chhh
Confidence 8763
|
|
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.4 Score=42.03 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHH
Q 013813 168 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 247 (436)
Q Consensus 168 d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~ 247 (436)
+.++..+.++.+.+.++.|+++... .. .+|. ++++++++.. .++.+-+.+++-.......++.
T Consensus 9 ~~~~a~~~~~~~~~~v~~iKig~~l----~~--~~G~----------~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~ 71 (213)
T TIGR01740 9 TKDEALDLADSLGPEIEVIKVGIDL----LL--DGGD----------KIIDELAKLN-KLIFLDLKFADIPNTVKLQYES 71 (213)
T ss_pred CHHHHHHHHHhcCCcCcEEEECHHH----HH--hcCH----------HHHHHHHHcC-CCEEEEEeecchHHHHHHHHHH
Confidence 3343333334344457888888421 01 1332 5666666543 3554444354322333455666
Q ss_pred HHHcCccEEEeccC
Q 013813 248 LEDAGCSLLAVHGR 261 (436)
Q Consensus 248 le~aG~d~I~VHgR 261 (436)
+.+.|+|+++||+-
T Consensus 72 ~~~~gad~vTvh~~ 85 (213)
T TIGR01740 72 KIKQGADMVNVHGV 85 (213)
T ss_pred HHhcCCCEEEEcCC
Confidence 78899999999974
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=93.06 E-value=1 Score=43.08 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=70.8
Q ss_pred HHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE
Q 013813 214 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 291 (436)
Q Consensus 214 ~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia 291 (436)
.+.++++++.+ ++.+.+-..-+++.+++.++++.+++.++.+| ++... .-|++..+++++..++||.+
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~i-------EeP~~---~~d~~~~~~L~~~~~~pIa~ 150 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWI-------EEPCA---PDDLEGYAALRRRTGIPIAA 150 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeE-------ECCCC---ccCHHHHHHHHhhCCCCEEe
Confidence 56677777766 45677776667888999999999999888776 22111 24688889999999999999
Q ss_pred ccCCCCHHHHHHHHHhcCcceeee
Q 013813 292 NGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 292 nGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.=.+.+.++..++++...+|.+.+
T Consensus 151 dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 151 DESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEec
Confidence 667899999999888767787754
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.52 Score=46.86 Aligned_cols=62 Identities=13% Similarity=0.306 Sum_probs=42.8
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+..+.++|+|+|-+-.-... ++ +.++.+++. .++|+++.||| +.+.+.++.+ +|+|+|++|.
T Consensus 196 a~~A~~~gaD~I~ld~~~p~---------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~-~Gvd~I~vsa 259 (272)
T cd01573 196 ALAAAEAGADILQLDKFSPE---------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAA-AGADILVTSA 259 (272)
T ss_pred HHHHHHcCCCEEEECCCCHH---------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHH-cCCcEEEECh
Confidence 33355799999977533221 12 233334443 37999999999 7899999887 5999996664
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.092 Score=48.87 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
|......-.+.+++...|+|-+-+... -..++++++.+++|||+.|=|.+.+|+.++|+. ||++|.-.
T Consensus 102 DS~al~~~~~~i~~~~PD~vEilPg~~-----------p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~a-Ga~aVSTS 169 (175)
T PF04309_consen 102 DSSALETGIKQIEQSKPDAVEILPGVM-----------PKVIKKIREETNIPIIAGGLIRTKEDVEEALKA-GADAVSTS 169 (175)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEESCCH-----------HHHHCCCCCCCSS-EEEESS--SHHHHHHHCCT-TCEEEEE-
T ss_pred cHHHHHHHHHHHhhcCCCEEEEchHHH-----------HHHHHHHHHhcCCCEEeecccCCHHHHHHHHHc-CCEEEEcC
Confidence 333344456778889999998764421 256778888889999999999999999999986 99999877
Q ss_pred hHHh
Q 013813 317 ESLL 320 (436)
Q Consensus 317 Rgal 320 (436)
.--|
T Consensus 170 ~~~L 173 (175)
T PF04309_consen 170 NKEL 173 (175)
T ss_dssp -HHH
T ss_pred ChHh
Confidence 6443
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.3 Score=44.60 Aligned_cols=121 Identities=10% Similarity=0.130 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcCccEEEeccCccc----ccCCCCCccCHHHHHHHHh
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRD----EKDGKKFRADWNAIKAVKN 283 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG~d~I~VHgRt~~----~~~~~~g~ad~~~i~~ik~ 283 (436)
..+.+.+.++.|...+++||++-+-.|. +..+....++.++++|+.+|+|-.-+.. ...+...-.--+++.+|+.
T Consensus 61 ~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~A 140 (294)
T TIGR02319 61 SVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEA 140 (294)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHH
Confidence 3556677788888889999999998875 3345667899999999999999543321 1111100011234445443
Q ss_pred hC----CCcEEEccCCC-----CHHHHHHH---HHhcCcceeeeehHHhhCCccchhhhh
Q 013813 284 AL----RIPVLANGNVR-----HMEDVQKC---LEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 284 ~~----~iPVianGGI~-----s~eda~~~---l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
.. +.+++.|.... ..+++.+- ..+.|||+|++- | +.++...+++..
T Consensus 141 a~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~-~-~~~~~ei~~~~~ 198 (294)
T TIGR02319 141 AVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLE-A-MLDVEEMKRVRD 198 (294)
T ss_pred HHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEec-C-CCCHHHHHHHHH
Confidence 22 23455444322 24444322 123499999994 3 566666655543
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.1 Score=45.41 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
.++.+++-++++++.++.|+.|.+.... ....+.++.+.+.|++.|.+++.. + .+.++++++. ++.
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~--~~~~~~~~~~~~~~v~~v~~~~g~---------p--~~~i~~lk~~-g~~ 111 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS--PFVDELVDLVIEEKVPVVTTGAGN---------P--GKYIPRLKEN-GVK 111 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC--CCHHHHHHHHHhCCCCEEEEcCCC---------c--HHHHHHHHHc-CCE
Confidence 5888999999999888899988865421 122345666778999999875321 1 2468888875 777
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
|+. .|.+.+.++++.+. |+|+|.+
T Consensus 112 v~~--~v~s~~~a~~a~~~-GaD~Ivv 135 (307)
T TIGR03151 112 VIP--VVASVALAKRMEKA-GADAVIA 135 (307)
T ss_pred EEE--EcCCHHHHHHHHHc-CCCEEEE
Confidence 774 78999999888876 9999986
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=92.90 E-value=2.6 Score=40.20 Aligned_cols=134 Identities=22% Similarity=0.257 Sum_probs=77.3
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C---
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F--- 235 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g--- 235 (436)
++.++..+.++...| .+.|+|-|||+-+- ..| .|--.... ++.+++..++||.|=||. |
T Consensus 2 ~lEvcv~s~~~a~~A---~~~GAdRiELc~~l-----~~G----GlTPS~g~----i~~~~~~~~ipv~vMIRpr~gdF~ 65 (201)
T PF03932_consen 2 ILEVCVESLEDALAA---EAGGADRIELCSNL-----EVG----GLTPSLGL----IRQAREAVDIPVHVMIRPRGGDFV 65 (201)
T ss_dssp EEEEEESSHHHHHHH---HHTT-SEEEEEBTG-----GGT-----B---HHH----HHHHHHHTTSEEEEE--SSSS-S-
T ss_pred eEEEEeCCHHHHHHH---HHcCCCEEEECCCc-----cCC----CcCcCHHH----HHHHHhhcCCceEEEECCCCCCcc
Confidence 455666676665544 35799999998521 111 23233344 444445678899998887 2
Q ss_pred CChhh---HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEcc---CCCCHHHHHHHHHhc
Q 013813 236 PNLQD---TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANG---NVRHMEDVQKCLEET 308 (436)
Q Consensus 236 ~~~~d---~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianG---GI~s~eda~~~l~~t 308 (436)
.+.++ ..+-++.+.++|+|++.+-.=+.+ +..|.+.++++.+.. +.|+...= -+.++..+.+.|...
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d------g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~l 139 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTED------GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIEL 139 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETT------SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCC------CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhc
Confidence 12222 344567788999999988655443 258888888888764 68887654 355666666666556
Q ss_pred Ccceeeee
Q 013813 309 GCEGVLSA 316 (436)
Q Consensus 309 GaDgVmIG 316 (436)
|++.|.-.
T Consensus 140 G~~rVLTS 147 (201)
T PF03932_consen 140 GFDRVLTS 147 (201)
T ss_dssp T-SEEEES
T ss_pred CCCEEECC
Confidence 99988654
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.1 Score=42.13 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=90.6
Q ss_pred CCCcHHHHHHHHHhCCCeEEeCccc--chhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHHHHHHHcCCCcEEEE
Q 013813 112 DNSELPFRMLCRRYGAEAAYTPMLH--SRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 112 gvtd~~fR~l~~~~Ga~l~~Temis--a~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~AA~~v~~g~D~IdL 188 (436)
|.|+..=-.+|...|++++-.-+.. .+.+. ...........+ |..|=++.+ +++++.+.++ +.+.|.|.|
T Consensus 5 Gi~~~~da~~~~~~g~d~~Gfi~~~~S~R~v~--~~~a~~l~~~~~---~~~VgVf~~~~~~~I~~~~~--~~~ld~vQL 77 (197)
T PF00697_consen 5 GITRPEDARLAAELGADYLGFIFYPKSPRYVS--PDQARELVSAVP---PKIVGVFVNQSPEEILEIVE--ELGLDVVQL 77 (197)
T ss_dssp ---SHHHHHHHHHHTSSEEEEE--TTCTTB----HHHHHHHHCCSS---SSEEEEESSS-HHHHHHHHH--HCTESEEEE
T ss_pred CCCcHHHHHHHHHcCCCEEeeecCCCCCCccC--HHHHHHHHHhcC---CCEEEEEcCCCHHHHHHHHH--HcCCCEEEE
Confidence 4444444467888999763322221 22221 111111112111 214444544 4555554332 235799999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC-ccEEEeccCcccccC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKD 267 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~ 267 (436)
|- .. -.+.++.++. ++|+.-.++...+.+. .+.+.... +|++.+.++.
T Consensus 78 HG-------------~e-------~~e~~~~l~~--~~~vi~~~~v~~~~~~----~~~~~~~~~~d~~LlD~~~----- 126 (197)
T PF00697_consen 78 HG-------------DE-------SPEYIKLLRA--GLPVIKAIHVDKDIDL----LDYLERYESVDYFLLDSGS----- 126 (197)
T ss_dssp -S-------------GG--------HHHHHHHHT--TSEEEEEEEESSCHSC----CHHCHCSTT-SEEEEESSS-----
T ss_pred CC-------------CC-------CHHHHHHhhc--CceEEEEEEeCCccch----HHHHHhcccccEEeEccCC-----
Confidence 92 11 2223333442 5688877777654331 12222222 3889888332
Q ss_pred CCCC-ccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 268 GKKF-RADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 268 ~~~g-~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+++| ..||+.+..+.+. .+.|++..|||. ++.+.++++..+..||=+.+|.=.+|-.
T Consensus 127 GgtG~~~dw~~~~~~~~~~~~~p~iLAGGl~-p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 127 GGTGKTFDWSLLKKIVESYSPKPVILAGGLN-PENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp TSSSS---GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred CcCCcccCHHHhhhhhhhcccCcEEEEcCCC-hHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 2222 5799999888874 389999999997 6888899987799999998887666554
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.67 Score=46.21 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
-+-|++--+ .++++...+++ .+|.+.| |+.++++.+++. ++. .++.||-+|--.+
T Consensus 86 ~glpvvTeV--~~~~q~~~vae----~~DilQI--------------gAr~~rqtdLL~----a~~-~tgkpV~lKkGq~ 140 (290)
T PLN03033 86 YDLPIVTDV--HESSQCEAVGK----VADIIQI--------------PAFLCRQTDLLV----AAA-KTGKIINIKKGQF 140 (290)
T ss_pred HCCceEEee--CCHHHHHHHHh----hCcEEee--------------CcHHHHHHHHHH----HHH-ccCCeEEeCCCCC
Confidence 456777665 34555544443 3577765 566666655544 443 4589999996667
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHHHHhhCCCcEEE
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLA 291 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ik~~~~iPVia 291 (436)
.+.++....++.+.+.|-..|.+.-|-.. . ++. ...|+..+..+++ .++|||.
T Consensus 141 ~t~~e~~~aaeki~~~GN~~viLcERG~t-F-gy~~lv~D~r~ip~mk~-~~lPVI~ 194 (290)
T PLN03033 141 CAPSVMRNSAEKVRLAGNPNVMVCERGTM-F-GYNDLIVDPRNLEWMRE-ANCPVVA 194 (290)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeCCCC-c-CCCCcccchhhhHHHHh-cCCCEEE
Confidence 78889999999999999999988766442 1 222 2368888888875 7899985
|
|
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.88 Score=47.64 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=82.2
Q ss_pred cCCCcEEEEecC-CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEE
Q 013813 180 EPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 180 ~~g~D~IdLN~G-CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I 256 (436)
+.||..+-+.+| .|. -| ...++.-.+.|+++++.+ ++.+.|-...+++.++++++++.+++.|+.+|
T Consensus 170 ~~Gf~~~Kik~~~g~~-------~g---~~~~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wi 239 (394)
T PRK15440 170 EMGFIGGKMPLHHGPA-------DG---DAGLRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWI 239 (394)
T ss_pred hCCCCEEEEcCCcCcc-------cc---hHHHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcce
Confidence 458888888753 121 01 012455567778888877 46788887778899999999999999998876
Q ss_pred EeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CCCCHHHHHHHHHhcCcceeee
Q 013813 257 AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 257 ~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI~s~eda~~~l~~tGaDgVmI 315 (436)
++... +-|++..+++++.+++||...+ .+.+..+++++++...+|.|++
T Consensus 240 -------EEPl~---~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 240 -------EECLP---PDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred -------eCCCC---cccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 22111 3478888999998876554433 4778999999999867887764
|
|
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.97 Score=43.17 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=83.4
Q ss_pred EEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc---CC
Q 013813 161 FVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---FP 236 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl---g~ 236 (436)
.|.|.+.+.+++.+.++.+.. ++|.|||-+.+= .. ...+.+.+.+..+++.+++|+.+=+|. |.
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l---------~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYL---------EN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGS---------TT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccc---------cc---cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 378899999999888877665 999999997431 11 456788889999988889999999886 21
Q ss_pred ----ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc----CCCCHHHHHHHHH--
Q 013813 237 ----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLE-- 306 (436)
Q Consensus 237 ----~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG----GI~s~eda~~~l~-- 306 (436)
+.++-.++.+.+.+.|+++|.|--.... +...........+..||++= +-.+.+++.+.++
T Consensus 69 ~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~---------~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~ 139 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAIRLGPDYIDIELDLFP---------DDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEM 139 (224)
T ss_dssp SBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCH---------HHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEEcccch---------hHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHH
Confidence 2355678888888999999988543211 01111233334466676653 3445554544443
Q ss_pred -hcCcceeeee
Q 013813 307 -ETGCEGVLSA 316 (436)
Q Consensus 307 -~tGaDgVmIG 316 (436)
..|||.|=++
T Consensus 140 ~~~gadivKia 150 (224)
T PF01487_consen 140 QELGADIVKIA 150 (224)
T ss_dssp HHTT-SEEEEE
T ss_pred HhcCCCeEEEE
Confidence 3477765444
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.1 Score=44.04 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=49.4
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
+++...+-| +.+++|+|.||||++...+.... -......+.+..+++.+++.+++||++-..- .+.++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~----~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~-------~~v~~ 90 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEP----VSVEEELERVIPVLRALAGEPDVPISVDTFN-------AEVAE 90 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc----CCHHHHHHHHHHHHHHHHhcCCCeEEEeCCc-------HHHHH
Confidence 556555555 56788999999998765431100 0011234567888888888778999887321 23455
Q ss_pred HHHHcCccEE
Q 013813 247 MLEDAGCSLL 256 (436)
Q Consensus 247 ~le~aG~d~I 256 (436)
.+.++|++.|
T Consensus 91 aaL~~g~~iI 100 (258)
T cd00423 91 AALKAGADII 100 (258)
T ss_pred HHHHhCCCEE
Confidence 5566776655
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.98 Score=42.30 Aligned_cols=88 Identities=16% Similarity=0.331 Sum_probs=64.7
Q ss_pred HHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCC
Q 013813 216 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 216 Iv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI 295 (436)
+++.+.+. ++..=+|. .+.+++.++++.+.+.|+..|.+.-++.. ..+.++.+++....-.++.|-+
T Consensus 5 ~~~~l~~~---~~~~v~r~-~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~---------~~e~~~~~~~~~~~~~~g~gtv 71 (187)
T PRK07455 5 WLAQLQQH---RAIAVIRA-PDLELGLQMAEAVAAGGMRLIEITWNSDQ---------PAELISQLREKLPECIIGTGTI 71 (187)
T ss_pred HHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCC---------HHHHHHHHHHhCCCcEEeEEEE
Confidence 44444333 44444554 46688899999999999999988655532 2466777777666656888999
Q ss_pred CCHHHHHHHHHhcCcceeeeeh
Q 013813 296 RHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGR 317 (436)
.+.++++.+++. |||+|++|-
T Consensus 72 l~~d~~~~A~~~-gAdgv~~p~ 92 (187)
T PRK07455 72 LTLEDLEEAIAA-GAQFCFTPH 92 (187)
T ss_pred EcHHHHHHHHHc-CCCEEECCC
Confidence 999999999986 999998774
|
|
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=92.48 E-value=3.2 Score=43.04 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=85.3
Q ss_pred CCCCCEEEEecC----CCHHHHHHHHHHH-cCCCcEEEEe--cCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--
Q 013813 155 KEDRPLFVQFCA----NDPEILLNAARRV-EPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-- 225 (436)
Q Consensus 155 ~~e~plivQL~g----~d~e~~~~AA~~v-~~g~D~IdLN--~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-- 225 (436)
-.++|++.-++- -|++.+++.+..+ ..|+|+|-.. +|-+. -..+.++.+.+.+.++.+.+.++
T Consensus 127 v~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~--------~~~~eER~~~v~~av~~a~~~TG~~ 198 (367)
T cd08205 127 VHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP--------YAPFEERVRACMEAVRRANEETGRK 198 (367)
T ss_pred CCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc--------cCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 457999988764 4699999999654 5689998543 22111 01122344556666666665554
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc--c---------C
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN--G---------N 294 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian--G---------G 294 (436)
.++.+- +..+.++.++.++.++++|++++-|-.-.. + +..+..+++..++||.+- + .
T Consensus 199 ~~y~~n--it~~~~e~i~~a~~a~~~Gad~vmv~~~~~----g------~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~~ 266 (367)
T cd08205 199 TLYAPN--ITGDPDELRRRADRAVEAGANALLINPNLV----G------LDALRALAEDPDLPIMAHPAFAGALSRSPDY 266 (367)
T ss_pred ceEEEE--cCCCHHHHHHHHHHHHHcCCCEEEEecccc----c------ccHHHHHHhcCCCeEEEccCcccccccCCCC
Confidence 334444 333458899999999999999987753321 1 122344444446666531 1 1
Q ss_pred CCCHHHHHHHHHhcCcceeeee
Q 013813 295 VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIG 316 (436)
+.+..-..++.+..|+|.+..+
T Consensus 267 g~~~~~~~kl~RlaGad~~~~~ 288 (367)
T cd08205 267 GSHFLLLGKLMRLAGADAVIFP 288 (367)
T ss_pred cCCHHHHHHHHHHcCCCccccC
Confidence 3344555566666788877654
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.47 Score=45.21 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEEEEec
Q 013813 173 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIR 233 (436)
Q Consensus 173 ~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVsVKiR 233 (436)
.+|.+.+++|+|.||||.+.-.+.. -........+.+..+++.+++ ..++||++-..
T Consensus 23 ~~a~~~~~~GAdiIDIg~~st~p~~----~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~ 80 (210)
T PF00809_consen 23 KRAREQVEAGADIIDIGAESTRPGA----TPVSEEEEMERLVPVLQAIREENPDVPLSIDTF 80 (210)
T ss_dssp HHHHHHHHTT-SEEEEESSTSSTTS----SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHhcCCEEEecccccCCCC----CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC
Confidence 3455678899999999987633211 011222345677788888876 56899999853
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.4 Score=46.22 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=61.7
Q ss_pred HHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCc---ccccC-CCCCccC----HHHHHHHHhhCCCc
Q 013813 218 EKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT---RDEKD-GKKFRAD----WNAIKAVKNALRIP 288 (436)
Q Consensus 218 ~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt---~~~~~-~~~g~ad----~~~i~~ik~~~~iP 288 (436)
+.+++.. +.||.+-+--..+.++..++++.+++.|+|+|.+---. ...+. +....-+ .+.++.+++.+++|
T Consensus 91 ~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~P 170 (420)
T PRK08318 91 RRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLP 170 (420)
T ss_pred HHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCc
Confidence 3343333 47777775332267788999999999999999883211 11000 0000123 34456666667888
Q ss_pred EE--EccCCCCHHHHHHHHHhcCcceeee
Q 013813 289 VL--ANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 289 Vi--anGGI~s~eda~~~l~~tGaDgVmI 315 (436)
|+ ..-++.+..++.+.+++.|+|+|.+
T Consensus 171 v~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 171 VIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred EEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 76 4567777778878777789999984
|
|
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=92.21 E-value=5.1 Score=42.22 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=90.1
Q ss_pred CCCCCEEEEecC---CCHHHHHHHH-HHHcCC-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccE
Q 013813 155 KEDRPLFVQFCA---NDPEILLNAA-RRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPV 228 (436)
Q Consensus 155 ~~e~plivQL~g---~d~e~~~~AA-~~v~~g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPV 228 (436)
....|+..|+.- .+++++..-+ +.+..| +..+.+ +|-. +..+....+.+.+-++++++ ..+..+
T Consensus 162 ~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~Kk-vG~~---------~~k~~~~~~~~~~ri~~lr~~g~~~~l 231 (408)
T TIGR01502 162 TNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVEE-LGLD---------GEKLLEYVKWLRDRIIKLGREGYAPIF 231 (408)
T ss_pred CCceeEEEEeeccCCCCHHHHHHHHHHHHhccCccceee-ecCC---------HHHhhhhHHHHHHHHHHhhccCCCCeE
Confidence 355788888752 4567776555 555665 666554 4421 11122223344455555662 224456
Q ss_pred EEEecc------CCChhhHHHHHHHHHHcCccE-EEeccCcccccCCC-CCccCHHHHHHHHhh-----CCCcEEEccCC
Q 013813 229 SCKIRV------FPNLQDTIKYAKMLEDAGCSL-LAVHGRTRDEKDGK-KFRADWNAIKAVKNA-----LRIPVLANGNV 295 (436)
Q Consensus 229 sVKiRl------g~~~~d~~~~ak~le~aG~d~-I~VHgRt~~~~~~~-~g~ad~~~i~~ik~~-----~~iPVianGGI 295 (436)
.|-..- +|+.+++.++++.+++..... +.+ ++.... ....+++..+++++. +++||++.=.+
T Consensus 232 ~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~i-----EqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~ 306 (408)
T TIGR01502 232 HIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRI-----EGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWC 306 (408)
T ss_pred EEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEE-----ecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCC
Confidence 666553 678888999999998742211 222 211100 001248888899887 58999999999
Q ss_pred CCHHHHHHHHHhcCcceeee
Q 013813 296 RHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmI 315 (436)
.+++|+.++++...||.|.+
T Consensus 307 ~t~~d~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 307 NTVEDVKFFTDAKAGHMVQI 326 (408)
T ss_pred CCHHHHHHHHHhCCCCEEEe
Confidence 99999999999888888875
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.92 Score=45.12 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=74.7
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc-cEEEe-ccCcccccCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAV-HGRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~-d~I~V-HgRt~~~~~~~~g~ad~~~i~ 279 (436)
-|+.++.+..++.++ ..++.||.+|-......++....++.....|+ ..+.+ |-..+..........|+..+.
T Consensus 113 IgAr~~~n~~ll~~a-----s~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~~ 187 (270)
T PF00793_consen 113 IGARLMENQDLLEAA-----SGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAVP 187 (270)
T ss_dssp E-GGGTTCHHHHHHH-----HCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHHH
T ss_pred ECcchhcCHHHHHHh-----ccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHHH
Confidence 478888887776544 35789999997777777888888899999995 66544 432222211111245778888
Q ss_pred HHHhhCCCcEEEcc----CCCC-------HHHHHHHHHhcCcceeeeeh
Q 013813 280 AVKNALRIPVLANG----NVRH-------MEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 280 ~ik~~~~iPVianG----GI~s-------~eda~~~l~~tGaDgVmIGR 317 (436)
.+++..++||+..- +-.+ +..+.+.+.. |+||+||=.
T Consensus 188 ~~~~~~~lpVivD~SH~~~~~~~~~q~~V~~~a~aaia~-GidGlmiEs 235 (270)
T PF00793_consen 188 IMKKKTHLPVIVDPSHANSRKDGGRQELVPPLARAAIAA-GIDGLMIES 235 (270)
T ss_dssp HHHHHTSSEEEEEHHHHTTTCGGGGHCGHHHHHHHHHHH-TESEEEEEE
T ss_pred HHHHhcCCCEEECchhhhccccCCchhhHHHHHHHHHhh-cCCEEEEee
Confidence 88888889998754 2333 5666677765 999999975
|
Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A .... |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.4 Score=39.76 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=71.5
Q ss_pred EEecCCC-HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEeccCCChh
Q 013813 162 VQFCAND-PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNLQ 239 (436)
Q Consensus 162 vQL~g~d-~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRlg~~~~ 239 (436)
++|||-. +++... .++.|+|.|-+-+--+.+. .-+++.+.++.+.+... ..++|++. +
T Consensus 1 vKiCGi~~~ed~~~---a~~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~vn-------~ 60 (203)
T cd00405 1 VKICGITTLEDALA---AAEAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFVN-------E 60 (203)
T ss_pred CEECCCCCHHHHHH---HHHcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEeC-------C
Confidence 4577754 443332 2456899999986432210 12466677777666542 23555544 2
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH-hcCcceeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE-ETGCEGVLS 315 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~-~tGaDgVmI 315 (436)
+..++.+.+.+.|+|+|++|+-. +.+.++.+++..+.+++-.=++.+..+...... ..++|.+.+
T Consensus 61 ~~~~i~~ia~~~~~d~Vqlhg~e-----------~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~ 126 (203)
T cd00405 61 DLEEILEIAEELGLDVVQLHGDE-----------SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILL 126 (203)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC-----------CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEE
Confidence 33345556678999999999753 124577777766666664445555555442211 248998864
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.2 Score=40.65 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
+.+.+.++++.+++..+.|+.+.+-.........++++.+.++|++.|++++.. ..+.++.+++ .+++
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~-----------~~~~~~~~~~-~~i~ 104 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGP-----------PAEVVERLKA-AGIK 104 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCC-----------CHHHHHHHHH-cCCE
Confidence 567788888888766556766665443211356678888999999999997541 1244556554 4677
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++. .+.+.++++++.+. |+|++.+
T Consensus 105 ~i~--~v~~~~~~~~~~~~-gad~i~~ 128 (236)
T cd04730 105 VIP--TVTSVEEARKAEAA-GADALVA 128 (236)
T ss_pred EEE--eCCCHHHHHHHHHc-CCCEEEE
Confidence 765 36788888887774 8999876
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=3.2 Score=39.58 Aligned_cols=127 Identities=19% Similarity=0.174 Sum_probs=77.2
Q ss_pred EEEecCCC-HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh
Q 013813 161 FVQFCAND-PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 239 (436)
Q Consensus 161 ivQL~g~d-~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~ 239 (436)
.++|||-. +++...+ .+.|+|.|-+.+-...+. .=+++.+.+|.+.+...+ .+|.|- .. .
T Consensus 4 ~vKICGi~~~eda~~~---~~~Gad~iGfI~~~~S~R----------~V~~~~a~~i~~~~~~~i-~~VgVf--~~---~ 64 (210)
T PRK01222 4 RVKICGITTPEDAEAA---AELGADAIGFVFYPKSPR----------YVSPEQAAELAAALPPFV-KVVGVF--VN---A 64 (210)
T ss_pred eEEECCCCcHHHHHHH---HHcCCCEEEEccCCCCCC----------cCCHHHHHHHHHhCCCCC-CEEEEE--eC---C
Confidence 48999964 4443332 346889888875332211 124677888888765322 344444 11 3
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh-cCcceeeeeh
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 317 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~-tGaDgVmIGR 317 (436)
+..++.+.+++.|.+.|.+||-. +.+.++.+++..+++|+-.=.|.+..++....+. ..||.+++-.
T Consensus 65 ~~~~i~~~~~~~~~d~vQLHg~e-----------~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds 132 (210)
T PRK01222 65 SDEEIDEIVETVPLDLLQLHGDE-----------TPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDA 132 (210)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC-----------CHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcC
Confidence 44455667789999999999732 2356778887767887766666655555444332 2578777643
|
|
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=5.1 Score=40.65 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=77.7
Q ss_pred ecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHH
Q 013813 164 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 164 L~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~ 242 (436)
|...+++++++-++.. .||..+-+..|- .+++.-.+.++++++.+ ++.+.+-..-+|+.+++.
T Consensus 111 l~~~~~~~~~~~a~~~-~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~ 174 (322)
T PRK05105 111 LCYGDPDELILKLADM-PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQ 174 (322)
T ss_pred eecCCHHHHHHHHHHc-CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 3445777777666544 788877776541 23444456666666654 334444444468889999
Q ss_pred HHHHHHHH---cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 243 KYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 243 ~~ak~le~---aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
++++.+++ .++.+| +|. . .+++..+++++..++||.+.=.+.+.++. ..+. .++|.|
T Consensus 175 ~~~~~l~~~~~~~i~~i-------EqP--~---~~~~~~~~l~~~~~~PIa~DEs~~~~~~~-~~~~-~~~d~i 234 (322)
T PRK05105 175 QFAKYVPPDYRHRIAFL-------EEP--C---KTPDDSRAFARATGIAIAWDESLREPDFQ-FEAE-PGVRAI 234 (322)
T ss_pred HHHHHhhhhcCCCccEE-------ECC--C---CCHHHHHHHHHhCCCCEEECCCCCchhhh-hhhc-CCCCEE
Confidence 99999998 777776 221 1 12445688888899999998889887643 3333 367766
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=24 Score=39.17 Aligned_cols=129 Identities=12% Similarity=0.182 Sum_probs=76.7
Q ss_pred CCCCCcHH------HHHHHHHhCCCe--EEeCcccchhhccChhhhhhhhhccCCCCCEEEE--ec---CCCHHHHHHHH
Q 013813 110 MVDNSELP------FRMLCRRYGAEA--AYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQ--FC---ANDPEILLNAA 176 (436)
Q Consensus 110 M~gvtd~~------fR~l~~~~Ga~l--~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQ--L~---g~d~e~~~~AA 176 (436)
.+|++..+ |=+.+.++|.+. +|..+-..+.+... . ...+ ..+.-+... +. .++++.+.+.+
T Consensus 87 ~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~---i-~~~k--~~G~~~~~~i~yt~sp~~t~e~~~~~a 160 (596)
T PRK14042 87 LLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVA---I-DAIK--SHKKHAQGAICYTTSPVHTLDNFLELG 160 (596)
T ss_pred ccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHH---H-HHHH--HcCCEEEEEEEecCCCCCCHHHHHHHH
Confidence 56777777 666777789886 55443222221111 1 1111 112211121 22 36789999999
Q ss_pred HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 177 RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
+.+. .|+|.|-|- |-.| +-.|..+.++++++++.+++||.+= ...+..-...-.-.+.++||+.
T Consensus 161 k~l~~~Gad~I~Ik----------DtaG---~l~P~~v~~lv~alk~~~~ipi~~H--~Hnt~Gla~an~laAieaGad~ 225 (596)
T PRK14042 161 KKLAEMGCDSIAIK----------DMAG---LLTPTVTVELYAGLKQATGLPVHLH--SHSTSGLASICHYEAVLAGCNH 225 (596)
T ss_pred HHHHHcCCCEEEeC----------Cccc---CCCHHHHHHHHHHHHhhcCCEEEEE--eCCCCCcHHHHHHHHHHhCCCE
Confidence 7664 589877664 3334 3469999999999999988777665 3333333333334456899998
Q ss_pred EEec
Q 013813 256 LAVH 259 (436)
Q Consensus 256 I~VH 259 (436)
|...
T Consensus 226 iD~a 229 (596)
T PRK14042 226 IDTA 229 (596)
T ss_pred EEec
Confidence 8653
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=13 Score=36.97 Aligned_cols=195 Identities=13% Similarity=0.095 Sum_probs=106.4
Q ss_pred EEccCCC---CCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhh----hhhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 106 IVAPMVD---NSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRN----EEFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 106 ~lAPM~g---vtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~----~~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
++.|+-. +-...+|++++.+ |.+.++.--.+.....-+...+. ...+......|+++++++.+.++..+.
T Consensus 9 ~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~ 88 (292)
T PRK03170 9 LVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIEL 88 (292)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHH
Confidence 4455532 3335677766654 77665532222221111211111 112233456799999999999999999
Q ss_pred HHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec---cCCChhhHHHHHHHHHHc
Q 013813 176 ARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR---VFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 176 A~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR---lg~~~~d~~~~ak~le~a 251 (436)
|+.++. |+|+|-+-. |. |. ....+.+.+-.+.|.+.+++||.+=-- .|.+.. .++.+.+.+.
T Consensus 89 a~~a~~~G~d~v~~~p--P~-------~~---~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~--~~~~~~L~~~ 154 (292)
T PRK03170 89 TKFAEKAGADGALVVT--PY-------YN---KPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDIL--PETVARLAEH 154 (292)
T ss_pred HHHHHHcCCCEEEECC--Cc-------CC---CCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCC--HHHHHHHHcC
Confidence 988765 999998853 22 21 124566777788888888899987632 222211 3445555433
Q ss_pred CccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC-cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 252 G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i-PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+ .| .|-. + . ..|...+..+.+..+- -.+.+|. -..+...+.. |++|++.|.+.+ .|.++.++-
T Consensus 155 p--~v--~giK-~---s---~~d~~~~~~~~~~~~~~~~v~~G~---d~~~~~~l~~-G~~G~is~~~n~-~P~~~~~l~ 218 (292)
T PRK03170 155 P--NI--VGIK-E---A---TGDLERVSELIELVPDDFAVYSGD---DALALPFLAL-GGVGVISVAANV-APKEMAEMC 218 (292)
T ss_pred C--CE--EEEE-E---C---CCCHHHHHHHHHhCCCCeEEEECC---hHhHHHHHHc-CCCEEEEhHHhh-hHHHHHHHH
Confidence 2 22 1111 1 1 1245556666554321 2334442 1223344554 999999887753 377776654
|
|
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=91.76 E-value=2 Score=42.47 Aligned_cols=179 Identities=20% Similarity=0.300 Sum_probs=94.5
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEe-Ccccchhh--ccChh-------hhhhhhhccCCCCCEEEEe-
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYT-PMLHSRIF--TESEK-------YRNEEFATCKEDRPLFVQF- 164 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~T-emisa~~l--~~~~~-------~~~~~~~~~~~e~plivQL- 164 (436)
-++.-|++ |. |...=|.+|-+++.+.|+|++.- -.+.--.+ ..... +-...+....+...+++-+
T Consensus 10 ~~k~~g~k-i~---~lTaYD~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmP 85 (261)
T PF02548_consen 10 KMKQKGEK-IV---MLTAYDYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMP 85 (261)
T ss_dssp HHHHHT---EE---EEE--SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--
T ss_pred HHHhCCCc-EE---EEecccHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCC
Confidence 34444553 33 66777899999999999998552 22211011 00000 0001122222233334332
Q ss_pred -cC--CCHHHHHHHH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----
Q 013813 165 -CA--NDPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 234 (436)
Q Consensus 165 -~g--~d~e~~~~AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl----- 234 (436)
+. .++++..+.| ++++ .|+|.|-|-.|. ...++|+++.+. ++||.-=|-+
T Consensus 86 f~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~-------------------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~ 145 (261)
T PF02548_consen 86 FGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA-------------------EIAETIKALVDA-GIPVMGHIGLTPQSV 145 (261)
T ss_dssp TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG-------------------GGHHHHHHHHHT-T--EEEEEES-GGGH
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEeccch-------------------hHHHHHHHHHHC-CCcEEEEecCchhhe
Confidence 11 2455555555 6776 689999998321 234455555433 7899877644
Q ss_pred ---------CCChh---hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHH
Q 013813 235 ---------FPNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 235 ---------g~~~~---d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~ 302 (436)
|.+.+ ..++-|+.++++|+-.|.+-... -+..+.|.+.++||+|+.|.=
T Consensus 146 ~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp------------~~la~~It~~l~IPtIGIGaG------- 206 (261)
T PF02548_consen 146 HQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVP------------AELAKAITEALSIPTIGIGAG------- 206 (261)
T ss_dssp HHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBB------------HHHHHHHHHHSSS-EEEESS--------
T ss_pred eccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecCH------------HHHHHHHHHhCCCCEEecCCC-------
Confidence 22333 44667888999999999886442 256788999999999988842
Q ss_pred HHHHhcCcceeee-ehHHhhC
Q 013813 303 KCLEETGCEGVLS-AESLLEN 322 (436)
Q Consensus 303 ~~l~~tGaDgVmI-GRgal~n 322 (436)
.+|||-++ ---+|+-
T Consensus 207 -----~~cDGQvLV~~DlLG~ 222 (261)
T PF02548_consen 207 -----PGCDGQVLVSHDLLGL 222 (261)
T ss_dssp -----STSSEEEE-HHHHTTS
T ss_pred -----CCCCceEEeHhhhhcc
Confidence 27888543 3334443
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=91.71 E-value=2.1 Score=43.04 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=84.8
Q ss_pred HHHHc-CCCcEEEEecCCCchhhhcCccc-ccccCChHHHHHHHHHHhcccCccEEEEeccCCC-hhhHHHHHHHHHHcC
Q 013813 176 ARRVE-PYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAG 252 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~~~~~~~~G-s~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~-~~d~~~~ak~le~aG 252 (436)
|++++ .||++|=+--.+ ....-|+- ..+ -..+.+.+.++.|.+.+++||++-+-.|.. ..+....++.++++|
T Consensus 28 Ari~e~aGf~ai~~ss~~---va~slG~pD~g~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aG 103 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFE---LSASYAVPDANI-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAG 103 (290)
T ss_pred HHHHHHcCCCEEEECHHH---HHHHCCCCCccc-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcC
Confidence 44454 489988775211 11000111 112 246677788888889999999999988753 335667789999999
Q ss_pred ccEEEeccCcccccCC----C-CCccCH-HHHHHHHh---h-CCCcEEEccCCCC------HHHHH----HHHHhcCcce
Q 013813 253 CSLLAVHGRTRDEKDG----K-KFRADW-NAIKAVKN---A-LRIPVLANGNVRH------MEDVQ----KCLEETGCEG 312 (436)
Q Consensus 253 ~d~I~VHgRt~~~~~~----~-~g~ad~-~~i~~ik~---~-~~iPVianGGI~s------~eda~----~~l~~tGaDg 312 (436)
+.+|+|-......+.+ . ..-.+. +.+.+|+. . .+.+++.|..... .+++. .+.+ .|||+
T Consensus 104 vagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~e-AGAD~ 182 (290)
T TIGR02321 104 ASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEE-AGADA 182 (290)
T ss_pred CeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHH-cCCCE
Confidence 9999995433211111 0 111222 33444443 2 2344555443322 24443 2233 49999
Q ss_pred eeeehHHhhCCccchhhhh
Q 013813 313 VLSAESLLENPALFAGFRT 331 (436)
Q Consensus 313 VmIGRgal~nP~lf~~i~~ 331 (436)
|++- +.+.++..+.++..
T Consensus 183 ifv~-~~~~~~~ei~~~~~ 200 (290)
T TIGR02321 183 ILIH-SRQKTPDEILAFVK 200 (290)
T ss_pred EEec-CCCCCHHHHHHHHH
Confidence 9993 44566776665543
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=8.5 Score=42.66 Aligned_cols=49 Identities=14% Similarity=0.400 Sum_probs=35.1
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc--eeeeehHHhhCC
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLENP 323 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD--gVmIGRgal~nP 323 (436)
..||+.++.+. .+.|++..|||. ++.+.++++..... ||=+.+|.=..|
T Consensus 147 ~fdw~~~~~~~--~~~p~iLAGGL~-peNV~~ai~~~~p~~~gVDvsSGvE~~p 197 (610)
T PRK13803 147 SFDWEKFYNYN--FKFPFFLSGGLS-PTNFDRIINLTHPQILGIDVSSGFEDSP 197 (610)
T ss_pred ccChHHhhhcc--cCCcEEEEeCCC-HHHHHHHHhhhCCCceEEEccCcccCCC
Confidence 36898775442 357999999997 68888888866666 777777664334
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.68 Score=46.38 Aligned_cols=87 Identities=14% Similarity=0.263 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGaD 311 (436)
|.+...++++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++||++.=|-.+.+++.++. +..|+|
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~-Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGS-LTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCccccc-CCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 5566778889999999999999988876432 11111234455555544 58998666656666665443 346999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+.-..+..|.
T Consensus 98 ~v~v~pP~y~~~~ 110 (294)
T TIGR02313 98 AAMVIVPYYNKPN 110 (294)
T ss_pred EEEEcCccCCCCC
Confidence 9999998887774
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.7 Score=44.25 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=61.7
Q ss_pred cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 180 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 180 ~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
+.|+|.|+||+-...... + -..++.+..+++.|.+.+++|+.|-.-... ..+..-+-..++.++=....|.
T Consensus 87 ~~GAd~Idl~~~s~dp~~-~-------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~-~kD~evleaale~~~g~~pLIn 157 (319)
T PRK04452 87 EYGADMITLHLISTDPNG-K-------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNP-EKDAEVLEKVAEAAEGERCLLG 157 (319)
T ss_pred HhCCCEEEEECCCCCccc-c-------cchHHHHHHHHHHHHHhCCCCEEEecCCCC-CCCHHHHHHHHHHhCCCCCEEE
Confidence 458999999962221100 0 123566888999998899999986632211 1233333333444432223344
Q ss_pred cCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CCCCHHHHHHHHHhcCc
Q 013813 260 GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGC 310 (436)
Q Consensus 260 gRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI~s~eda~~~l~~tGa 310 (436)
+-+.+ +|+.+..+....+.+|++-+ +|.-..++...+...|.
T Consensus 158 Sat~e---------n~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~Gi 201 (319)
T PRK04452 158 SAEED---------NYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELGV 201 (319)
T ss_pred ECCHH---------HHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcCC
Confidence 33321 46777777777788888775 33333333333444455
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=91.64 E-value=2.5 Score=43.21 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=71.4
Q ss_pred cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCcc---EEEeccCccccc
Q 013813 190 LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEK 266 (436)
Q Consensus 190 ~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d---~I~VHgRt~~~~ 266 (436)
+|||.-+ -||.-+.+..+++.+-+ .++||.++.-. .+.++....++.+.+.|.. .+.+|.-+.-+.
T Consensus 108 ~~v~~~K-----IaS~~~~n~pLL~~~A~-----~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~ 176 (329)
T TIGR03569 108 LGVPRFK-----IPSGEITNAPLLKKIAR-----FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPA 176 (329)
T ss_pred cCCCEEE-----ECcccccCHHHHHHHHh-----cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCC
Confidence 4566532 35666788888776643 48999999544 3677888888888899985 667786543221
Q ss_pred CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 267 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 267 ~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
.....|+..|..+++..++||.+++=-....-....... ||+
T Consensus 177 --~~~~~nL~~I~~Lk~~f~~pVG~SdHt~G~~~~~aAval-GA~ 218 (329)
T TIGR03569 177 --PFEDVNLNAMDTLKEAFDLPVGYSDHTLGIEAPIAAVAL-GAT 218 (329)
T ss_pred --CcccCCHHHHHHHHHHhCCCEEECCCCccHHHHHHHHHc-CCC
Confidence 112578999999999889999987533333333333332 666
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.58 Score=47.09 Aligned_cols=43 Identities=28% Similarity=0.635 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+-++.+++.+++||+.-| |-+.+||..+.+. |++|+++.
T Consensus 209 Sl~W~Di~wLr~~T~LPIvvKG-ilt~eDA~~Ave~-G~~GIIVS 251 (363)
T KOG0538|consen 209 SLSWKDIKWLRSITKLPIVVKG-VLTGEDARKAVEA-GVAGIIVS 251 (363)
T ss_pred CCChhhhHHHHhcCcCCeEEEe-ecccHHHHHHHHh-CCceEEEe
Confidence 3589999999999999999876 6678999999996 99999874
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=91.50 E-value=2.7 Score=43.08 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=56.3
Q ss_pred HHHHHHHHhcc-cCccEEEEeccC------CChhhHHHHHHHHHHcCccEEEecc--Ccc-cccCCCCCccCHHHHHHHH
Q 013813 213 VKSLVEKLALN-LNVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHG--RTR-DEKDGKKFRADWNAIKAVK 282 (436)
Q Consensus 213 v~eIv~av~~~-~~iPVsVKiRlg------~~~~d~~~~ak~le~aG~d~I~VHg--Rt~-~~~~~~~g~ad~~~i~~ik 282 (436)
+...++.+++. .++||.|-|--. ...++..+.++.+.+ ++|+|.+-- -.. .......+..-.+.++.++
T Consensus 124 ~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr 202 (344)
T PRK05286 124 ADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALK 202 (344)
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence 34444444432 578888886321 123455555555543 499997731 111 1101111112236677788
Q ss_pred hhCC-----CcEE--EccCCC--CHHHHHHHHHhcCcceeeeehHH
Q 013813 283 NALR-----IPVL--ANGNVR--HMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 283 ~~~~-----iPVi--anGGI~--s~eda~~~l~~tGaDgVmIGRga 319 (436)
+.++ +||+ .+-++. ...++.+.+++.|+|+|.+--..
T Consensus 203 ~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 203 EAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 7776 8876 344444 24455555666799998875443
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.75 Score=44.14 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=56.6
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
+++.+.|+..|-|..|.-.. + ..|+....++.+.+ ++-+++-.||+|++|+...-++ |+.+|.+|..++..-
T Consensus 200 ~raleiGakvvGvNNRnL~s---F--eVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~-GV~avLVGEslmk~s 273 (289)
T KOG4201|consen 200 QRALEIGAKVVGVNNRNLHS---F--EVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKA-GVKAVLVGESLMKQS 273 (289)
T ss_pred HHHHHhCcEEEeecCCccce---e--eechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHc-CceEEEecHHHHhcc
Confidence 44445699888888886542 2 57777777877765 5667888899999999998876 999999999998644
Q ss_pred c
Q 013813 324 A 324 (436)
Q Consensus 324 ~ 324 (436)
+
T Consensus 274 D 274 (289)
T KOG4201|consen 274 D 274 (289)
T ss_pred C
Confidence 3
|
|
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=91.45 E-value=3.7 Score=43.25 Aligned_cols=140 Identities=16% Similarity=0.252 Sum_probs=94.9
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCcEEEE--ecC----CCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v-~~g~D~IdL--N~G----CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++||+..+. |-+|+++++.+..+ ..|.|.|-= |+. ||. .++.+.+.+.++...+.
T Consensus 140 v~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 207 (406)
T cd08207 140 VEDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPL------------DERVRAVMRVINDHAQR 207 (406)
T ss_pred CCCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcH------------HHHHHHHHHHHHHHHHh
Confidence 46899998875 56799999999655 446776521 232 333 23344555555555556
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE----Ecc------
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL----ANG------ 293 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi----anG------ 293 (436)
++.....=..+..+.++..+-++.+.+.|+..+-|..-+ .-|..+..+++..++||. +.|
T Consensus 208 TG~~~~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p 277 (406)
T cd08207 208 TGRKVMYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLNS----------VGLSGLAALRRHSQLPIHGHRNGWGMLTRSP 277 (406)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHhCCCeEEEeccc----------cchHHHHHHHhcCCceEEECCCcceecccCC
Confidence 666555444555557888888899999999988665332 225667888888888887 444
Q ss_pred --CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 294 --NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 294 --GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
||.. .-..++.+..|+|.+.++.
T Consensus 278 ~~Gis~-~vl~kl~RLaGaD~~~~~~ 302 (406)
T cd08207 278 ALGISF-QAYQKLWRLAGVDHLHVNG 302 (406)
T ss_pred CCCCcH-HHHHHHHHHcCCCccccCC
Confidence 4554 3467778888999998875
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.3 Score=41.87 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=94.0
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEE-eC---cccc---hhhccChhhh---hhhhhccCCCCCEEEE-
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAY-TP---MLHS---RIFTESEKYR---NEEFATCKEDRPLFVQ- 163 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~-Te---misa---~~l~~~~~~~---~~~~~~~~~e~plivQ- 163 (436)
.-|+.-++ |+. |...=|.+|-+++.+.|.+++. .- |+.- ..+.-..... ...+.... .+.++|-
T Consensus 8 ~~~k~~~~-ki~---~lTAYD~~~A~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga-~~~~vv~D 82 (268)
T COG0413 8 IKMKQEGE-KIV---MLTAYDYPFAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGA-PNAFVVAD 82 (268)
T ss_pred HHHHhcCC-ceE---EEeccccHHHhhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcC-CCeeEEeC
Confidence 34555544 333 6777899999999999998644 22 2211 0000000000 01111111 1222221
Q ss_pred e----cCCCHHH-HHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc---
Q 013813 164 F----CANDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--- 234 (436)
Q Consensus 164 L----~g~d~e~-~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--- 234 (436)
+ ...++++ +..|+++++ .|+|+|-|-- | +.+.+.++.+.+. ++||.-=+-+
T Consensus 83 mPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEG------------G-------~~~~~~i~~L~~~-gIPV~gHiGLtPQ 142 (268)
T COG0413 83 LPFGSYEVSPEQALKNAARLMKEAGADAVKLEG------------G-------EEMAETIKRLTER-GIPVMGHIGLTPQ 142 (268)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcC------------C-------HHHHHHHHHHHHc-CCceEEEecCChh
Confidence 1 2234444 455557777 5899998872 2 4566677776544 7888776544
Q ss_pred -----------CCChh---hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 235 -----------FPNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 235 -----------g~~~~---d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
|.+.+ ..++-++.++++|+-.|.+-+.. -++.++|-+.++||+|+.|
T Consensus 143 ~v~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf~ivlE~Vp------------~~lA~~IT~~lsiPtIGIG 203 (268)
T COG0413 143 SVNWLGGYKVQGRTEESAEKLLEDAKALEEAGAFALVLECVP------------AELAKEITEKLSIPTIGIG 203 (268)
T ss_pred hhhccCCeeeecCCHHHHHHHHHHHHHHHhcCceEEEEeccH------------HHHHHHHHhcCCCCEEeec
Confidence 12222 34566888999999999886442 2556888899999999888
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.63 Score=49.96 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+.++.+.++|++.|.|-.-... +..-++.|++||+.. +++| ..|+|.|.+.++.+++. |||+|-+|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v-~agnv~t~~~a~~l~~a-Gad~v~vg 296 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPI-VAGNVVTAEGTRDLVEA-GADIVKVG 296 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeE-EeeccCCHHHHHHHHHc-CCCEEEEC
Confidence 4567888899999999987432221 133478899999875 5554 46899999999999986 99997755
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=91.36 E-value=3.9 Score=41.78 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE-Eec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-KIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV-KiR 233 (436)
.+.|+++ +-..|.. .|++++ .|+|.|=+- ....++.-| |-+-+-=..+.+...+++|++....|++| -+-
T Consensus 33 ~g~kivm-lTAyD~~----sA~i~d~aGvD~ILVG--DSlgmv~lG-~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmP 104 (332)
T PLN02424 33 RGEPITM-VTAYDYP----SAVHVDSAGIDVCLVG--DSAAMVVHG-HDTTLPITLDEMLVHCRAVARGANRPLLVGDLP 104 (332)
T ss_pred CCCcEEE-EecCCHH----HHHHHHHcCCCEEEEC--CcHHHHhcC-CCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCC
Confidence 3345443 4455532 234454 488886553 333333333 44444456677888888999999999988 766
Q ss_pred cC---CChhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE
Q 013813 234 VF---PNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 290 (436)
Q Consensus 234 lg---~~~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi 290 (436)
.+ .+.+++++.|..+ .++|+++|-+-|.... ..+.|+.+. ..+|||+
T Consensus 105 fgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~---------~~~~I~~l~-~~GIPV~ 155 (332)
T PLN02424 105 FGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPS---------RVTAAKAIV-EAGIAVM 155 (332)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHH---------HHHHHHHHH-HcCCCEE
Confidence 55 3567777777777 6799999988766311 135566666 4589999
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=91.35 E-value=16 Score=36.16 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=105.7
Q ss_pred EEccCC---CCCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhhh----hhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 106 IVAPMV---DNSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRNE----EFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 106 ~lAPM~---gvtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~~----~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
++.|+- .+-...+|+++..+ |++-++.--.+.....-+...+.. ..+......|+++++.+++.++..+-
T Consensus 6 ~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~ 85 (285)
T TIGR00674 6 LITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISL 85 (285)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHH
Confidence 445553 24446777777654 776555321111111111112211 12233456899999999999988888
Q ss_pred HHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec---cCCChhhHHHHHHHHHHc
Q 013813 176 ARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR---VFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 176 A~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR---lg~~~~d~~~~ak~le~a 251 (436)
|+.+++ |+|+|-+-. |. |. ....+.+.+-.+.|.+++++||.+=-- .|.+.. .++.+.+.+.
T Consensus 86 a~~a~~~Gad~v~v~p--P~-------y~---~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~--~~~l~~L~~~ 151 (285)
T TIGR00674 86 TKFAEDVGADGFLVVT--PY-------YN---KPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLY--PETVKRLAEE 151 (285)
T ss_pred HHHHHHcCCCEEEEcC--Cc-------CC---CCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCC--HHHHHHHHcC
Confidence 887765 999998853 33 21 124577778888888888899886632 232211 3344444443
Q ss_pred CccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 252 G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+ . |.|-. + . ..|+..+.++.+..+ +.|+...+ ......+.. |++|.+.|-+.+ -|.++.++
T Consensus 152 ~-~---v~giK-~---s---~~d~~~~~~l~~~~~~~~~v~~G~d----~~~~~~~~~-G~~G~i~~~~~~-~P~~~~~l 214 (285)
T TIGR00674 152 P-N---IVAIK-E---A---TGNLERISEIKAIAPDDFVVLSGDD----ALTLPMMAL-GGKGVISVTANV-APKLMKEM 214 (285)
T ss_pred C-C---EEEEE-e---C---CCCHHHHHHHHHhcCCCeEEEECch----HHHHHHHHc-CCCEEEehHHHh-hHHHHHHH
Confidence 3 1 22221 1 1 235566666665543 43333222 233455554 999999876653 24455444
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.2 Score=42.75 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=59.3
Q ss_pred HHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc--cCC--CCCccC----HHHHHHHHhhCCCc
Q 013813 218 EKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--KDG--KKFRAD----WNAIKAVKNALRIP 288 (436)
Q Consensus 218 ~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~--~~~--~~g~ad----~~~i~~ik~~~~iP 288 (436)
+.+++.. +.|+.+=+--..+.++..+.++.+++.|+|+|.+---.... ..+ .....+ .+.++.+++.+++|
T Consensus 91 ~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~P 170 (299)
T cd02940 91 RELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIP 170 (299)
T ss_pred HHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCC
Confidence 3344433 57887775333377888999999999999999873211110 000 000122 34456666677888
Q ss_pred EEEc--cCCCCHHHHHHHHHhcCcceeeee
Q 013813 289 VLAN--GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 289 Vian--GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
|+.= -++.+..++.+.+.+.|+|+|.+.
T Consensus 171 v~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 171 VIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred eEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 8743 344455566665666799999754
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=91.26 E-value=13 Score=38.64 Aligned_cols=199 Identities=19% Similarity=0.220 Sum_probs=112.9
Q ss_pred HHHHhC--CCcE---EEccCCCCCcHHHHHHHHHh---CCCeE-EeCcccchhhccChhhhh---hhhhccC----CCCC
Q 013813 96 HWTKLG--RPKL---IVAPMVDNSELPFRMLCRRY---GAEAA-YTPMLHSRIFTESEKYRN---EEFATCK----EDRP 159 (436)
Q Consensus 96 ~~~~lg--~~~i---~lAPM~gvtd~~fR~l~~~~---Ga~l~-~Temisa~~l~~~~~~~~---~~~~~~~----~e~p 159 (436)
.|+.+| .-|+ ++=|+ |.+-..|..+|.++ |.|++ --|.+....+...++... ...+... ...+
T Consensus 117 ~R~~lgv~~rPl~~tiiKP~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~ 195 (364)
T cd08210 117 LRALLGIPERPLLCSALKPQ-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTL 195 (364)
T ss_pred HHHHhCCCCCceEEEEeccc-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcce
Confidence 455555 2344 45697 99999999999877 66765 455555544433222111 1112222 3467
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCC-
Q 013813 160 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP- 236 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~- 236 (436)
.+++|.+. .+++.+-|+.++ .|++++-+|... +|-. .++.+++..+ +|+.. .|.+.
T Consensus 196 y~~Nita~-~~em~~ra~~a~~~Ga~~vMv~~~~---------~G~~----------~~~~l~~~~~~l~i~a-Hra~~g 254 (364)
T cd08210 196 YAPNVTGP-PTQLLERARFAKEAGAGGVLIAPGL---------TGLD----------TFRELAEDFDFLPILA-HPAFAG 254 (364)
T ss_pred EEEecCCC-HHHHHHHHHHHHHcCCCEEEeeccc---------chHH----------HHHHHHhcCCCcEEEE-cccccc
Confidence 88999886 667777776654 589999888531 2311 2333344444 45433 22221
Q ss_pred -------ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC---------CCcEEEccCCCCHHH
Q 013813 237 -------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---------RIPVLANGNVRHMED 300 (436)
Q Consensus 237 -------~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~---------~iPVianGGI~s~ed 300 (436)
.+.-..-+.+.+.-+|+|.+++..-. .+ . ...-+.+.++.+.+ ..|+ .+||+. +..
T Consensus 255 a~~~~~~~is~~~~~~kl~RlaGad~~~~~~~~--g~--~--~~~~e~~~~ia~~~~~~~~~iK~~~Pv-~sgG~~-~~~ 326 (364)
T cd08210 255 AFVSSGDGISHALLFGTLFRLAGADAVIFPNYG--GR--F--GFSREECQAIADACRRPMGGLKPILPA-PGGGMS-VER 326 (364)
T ss_pred ccccCCCcccHHHHHHHHHHHhCCCEEEeCCCc--CC--c--cCCHHHHHHHHHHhcCCccccCCCcCc-CCCCcC-HHH
Confidence 11112336777788999987653221 11 1 22234444454421 1233 355665 588
Q ss_pred HHHHHHhcCcce-eeeehHHhhCCc
Q 013813 301 VQKCLEETGCEG-VLSAESLLENPA 324 (436)
Q Consensus 301 a~~~l~~tGaDg-VmIGRgal~nP~ 324 (436)
+.++++..|-|. +++|-+++..|+
T Consensus 327 v~~l~~~~G~Dvil~aGGgi~gHp~ 351 (364)
T cd08210 327 APEMVELYGPDVMLLIGGSLLRAGD 351 (364)
T ss_pred HHHHHHHcCCcEEEEccccccCCCC
Confidence 889999889885 446777889888
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=91.24 E-value=16 Score=35.97 Aligned_cols=192 Identities=15% Similarity=0.126 Sum_probs=102.2
Q ss_pred EEccCC---CCCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhh----hhhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 106 IVAPMV---DNSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRN----EEFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 106 ~lAPM~---gvtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~----~~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
++.|+- .+-...+|.+++.+ |++.++.---+.....-+...+. ...+......|+++++.+.+.++..+-
T Consensus 8 ~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~ 87 (284)
T cd00950 8 LVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIEL 87 (284)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHH
Confidence 445554 24446667766644 77654422111111111111111 112233456799999999999888888
Q ss_pred HHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec---cCCChhhHHHHHHHHHHc
Q 013813 176 ARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR---VFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 176 A~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR---lg~~~~d~~~~ak~le~a 251 (436)
|+.+++ |+|+|-+-. |. | .....+.+.+-.+.|.+.+++||.+=-- .|.+. . .++.+.+.+.
T Consensus 88 a~~a~~~G~d~v~~~~--P~-------~---~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~l-s-~~~~~~L~~~ 153 (284)
T cd00950 88 TKRAEKAGADAALVVT--PY-------Y---NKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNI-E-PETVLRLAEH 153 (284)
T ss_pred HHHHHHcCCCEEEEcc--cc-------c---CCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCC-C-HHHHHHHhcC
Confidence 887755 899988863 22 1 1123566777888888888899987632 22221 1 2333333333
Q ss_pred C-ccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 252 G-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 252 G-~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
+ +.+|- . . ..|+..+.++.+.. ++.| ..|. + ..+...+.. |++|++.|.+.+ -|.++.+
T Consensus 154 p~v~giK------~---s---~~~~~~~~~~~~~~~~~~~v-~~G~--d-~~~~~~~~~-G~~G~~s~~~n~-~p~~~~~ 215 (284)
T cd00950 154 PNIVGIK------E---A---TGDLDRVSELIALCPDDFAV-LSGD--D-ALTLPFLAL-GGVGVISVAANV-APKLMAE 215 (284)
T ss_pred CCEEEEE------E---C---CCCHHHHHHHHHhCCCCeEE-EeCC--h-HhHHHHHHC-CCCEEEehHHHh-hHHHHHH
Confidence 1 22221 1 0 12445556665554 3433 3342 1 233445554 999999887753 2454444
Q ss_pred h
Q 013813 329 F 329 (436)
Q Consensus 329 i 329 (436)
+
T Consensus 216 ~ 216 (284)
T cd00950 216 M 216 (284)
T ss_pred H
Confidence 3
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=4 Score=40.11 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=77.4
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--CC---
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--FP--- 236 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g~--- 236 (436)
+-+|..+.++... ..+.|+|-|||+-.-.. +.|--.+.++..+. +.+++||.|=||. |.
T Consensus 4 lEvcv~s~~~a~~---A~~~GAdRiELc~~L~~---------GGlTPS~g~i~~~~----~~~~ipv~vMIRPR~gdF~Y 67 (248)
T PRK11572 4 LEICCYSMECALT---AQQAGADRIELCAAPKE---------GGLTPSLGVLKSVR----ERVTIPVHPIIRPRGGDFCY 67 (248)
T ss_pred EEEEECCHHHHHH---HHHcCCCEEEEccCcCC---------CCcCCCHHHHHHHH----HhcCCCeEEEEecCCCCCCC
Confidence 4456666555443 34569999999743211 12333445555444 4557899888887 21
Q ss_pred Chhh---HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccC---CCCHHHHHHHHHhcC
Q 013813 237 NLQD---TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---VRHMEDVQKCLEETG 309 (436)
Q Consensus 237 ~~~d---~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGG---I~s~eda~~~l~~tG 309 (436)
+.++ ..+-++.+.++|+|+|.+-.=+.+ +..|.+.++++.+.. ++|+...=- +.++..+.+.|...|
T Consensus 68 s~~E~~~M~~di~~~~~~GadGvV~G~L~~d------g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG 141 (248)
T PRK11572 68 SDGEFAAMLEDIATVRELGFPGLVTGVLDVD------GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG 141 (248)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeECCC------CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC
Confidence 2222 234467788999999987554433 247777777776654 466654332 334555555444457
Q ss_pred cceee
Q 013813 310 CEGVL 314 (436)
Q Consensus 310 aDgVm 314 (436)
++.|.
T Consensus 142 ~~rIL 146 (248)
T PRK11572 142 VARIL 146 (248)
T ss_pred CCEEE
Confidence 77765
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.98 Score=41.84 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
..-.+.++..++|+|-|-+... =..++++.+.+++|||+.|=|.+-|++.++++. ||-+|.-
T Consensus 111 ~~~~~~i~~~~pD~iEvLPGv~-----------Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~a-GA~avST 172 (181)
T COG1954 111 EKGIKQIEKSEPDFIEVLPGVM-----------PKVIKEITEKTHIPIIAGGLIETEEEVREALKA-GAVAVST 172 (181)
T ss_pred HHHHHHHHHcCCCEEEEcCccc-----------HHHHHHHHHhcCCCEEeccccccHHHHHHHHHh-CcEEEee
Confidence 3445566788999998865421 267899999999999999999999999999996 8888763
|
|
| >COG1891 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.08 E-value=5.6 Score=37.19 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHH-HHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA-KMLED 250 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~a-k~le~ 250 (436)
-.+|.+.++.|+|.||+- |-..| +|..+...+-+-++++... +.+|+.-+---+....+..+| --+.-
T Consensus 10 ~eEA~eAieGGAdIiDVK------NP~EG----SLGANFPWvIr~i~Ev~p~-d~~vSAT~GDvpYKPGT~slAalGaav 78 (235)
T COG1891 10 REEAIEAIEGGADIIDVK------NPAEG----SLGANFPWVIREIREVVPE-DQEVSATVGDVPYKPGTASLAALGAAV 78 (235)
T ss_pred HHHHHHHhhCCCceEecc------CcccC----cccCCChHHHHHHHHhCcc-ceeeeeeecCCCCCCchHHHHHHHhHh
Confidence 456677778899999984 22233 3444445544434443322 356666532211112223332 23456
Q ss_pred cCccEEEeccC-cccccCCCCCccCHHHHHHHHhhC-----CCcEEEcc-------CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 251 AGCSLLAVHGR-TRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANG-------NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 251 aG~d~I~VHgR-t~~~~~~~~g~ad~~~i~~ik~~~-----~iPVianG-------GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+|+|+|-|--. ++. + .-.++..+.+.+++ +..|++.| |--++-++-+...+.|||.+|+-+
T Consensus 79 ~GaDYiKVGLYg~kn----~--~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDT 152 (235)
T COG1891 79 AGADYIKVGLYGTKN----E--EEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDT 152 (235)
T ss_pred hCCceEEEeeccccc----H--HHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEec
Confidence 89999977321 111 0 11244444444333 46677777 222333444555667999999999
Q ss_pred HHhhCCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCC
Q 013813 318 SLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV 365 (436)
Q Consensus 318 gal~nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~ 365 (436)
+.=..-.+|.-.+ .+.+.+|.+.+.+|+.
T Consensus 153 aiKDGkslFdfm~-------------------~e~l~eFvd~Ah~hGL 181 (235)
T COG1891 153 AIKDGKSLFDFMD-------------------EEELEEFVDLAHEHGL 181 (235)
T ss_pred ccccchhHHhhhc-------------------HHHHHHHHHHHHHcch
Confidence 8877666775322 2357778887777764
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=91.06 E-value=3.3 Score=42.32 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=60.0
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc-cEEEeccCcccccCCCCCccCHHHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAV 281 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~-d~I~VHgRt~~~~~~~~g~ad~~~i~~i 281 (436)
||.-+++..+++.+-+ .++||.+|.-. .+.++....+..+.+.|. +.+.+|+-+.-+. .....|+..|..+
T Consensus 117 ~S~~~~n~~LL~~va~-----~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~--~~~~~nL~~i~~l 188 (327)
T TIGR03586 117 ASFEITDLPLIRYVAK-----TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKCTSSYPA--PLEDANLRTIPDL 188 (327)
T ss_pred CCccccCHHHHHHHHh-----cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEecCCCCCC--CcccCCHHHHHHH
Confidence 5556788888776643 48999999555 467788888888889998 5566786332221 1225789999999
Q ss_pred HhhCCCcEEEcc
Q 013813 282 KNALRIPVLANG 293 (436)
Q Consensus 282 k~~~~iPVianG 293 (436)
++..++||..++
T Consensus 189 k~~f~~pVG~SD 200 (327)
T TIGR03586 189 AERFNVPVGLSD 200 (327)
T ss_pred HHHhCCCEEeeC
Confidence 998899997765
|
|
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=91.05 E-value=5.7 Score=41.93 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=94.1
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHHc-CCCcEEEE--ecC----CCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRVE-PYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v~-~g~D~IdL--N~G----CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++|++..+. |-+|+++++.+..+. .|.|.|-= |+. ||. .++...+.+.++...+.
T Consensus 141 v~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 208 (412)
T TIGR03326 141 IKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRF------------EERVEKLYKVRDKVEAE 208 (412)
T ss_pred CCCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccH------------HHHHHHHHHHHHHHHHH
Confidence 46799998875 668999999996554 46777632 222 343 23344555555555566
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh---hCCCcEEE---------
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLA--------- 291 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~---~~~iPVia--------- 291 (436)
++.....=..+..+.++..+-++.+.+.|+..+-|..-+. -|..+..+++ ..++||.+
T Consensus 209 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~ 278 (412)
T TIGR03326 209 TGERKEYLANITAPVREMERRAELVADLGGQYVMVDVVVC----------GWSALQYIRELTEDLGLAIHAHRAMHAAFT 278 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEEEEeecc----------chHHHHHHHHhhccCCeEEEEcCCcccccc
Confidence 6665554444555568888888999999999887654332 2455666665 45788876
Q ss_pred ---ccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 292 ---NGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 292 ---nGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+-||.. .-..++.+..|+|.+.++..
T Consensus 279 ~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 279 RNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred cCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 336665 44677788889999998854
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=90.90 E-value=1.4 Score=44.23 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCC--CCccCHHHHHHHHhhC-CCcEEEccCCCCHH-HHHHHHHhcCcceeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIKAVKNAL-RIPVLANGNVRHME-DVQKCLEETGCEGVLS 315 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~--~g~ad~~~i~~ik~~~-~iPVianGGI~s~e-da~~~l~~tGaDgVmI 315 (436)
++.+..+.+++.|+|.|.|.-.|..+.+.. ....|++.+++|++.+ ++|++.-||=..++ +++++++. |+.-|=|
T Consensus 156 dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi 234 (287)
T PF01116_consen 156 DPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKN-GISKINI 234 (287)
T ss_dssp SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHT-TEEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHc-CceEEEE
Confidence 445555666799999998744444433333 3357899999999999 99999999866555 77888875 8888888
Q ss_pred ehHHh
Q 013813 316 AESLL 320 (436)
Q Consensus 316 GRgal 320 (436)
++.+.
T Consensus 235 ~T~~~ 239 (287)
T PF01116_consen 235 GTELR 239 (287)
T ss_dssp SHHHH
T ss_pred ehHHH
Confidence 87653
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.7 Score=42.80 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHhcc-cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC
Q 013813 209 NLPLVKSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 287 (436)
Q Consensus 209 ~p~~v~eIv~av~~~-~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i 287 (436)
.++.+++.++.+++. .+.|+.|.+-.........+..+.+.+.++..+++++.. + +. +.++++ .++
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~---------P--~~-~~~lk~-~Gi 104 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGR---------P--DQ-ARALEA-IGI 104 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCC---------h--HH-HHHHHH-CCC
Confidence 588999999999885 689999997432222223345667778999999887532 1 12 456664 477
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.|+ .-|.|...++++.+. |||+|+
T Consensus 105 ~v~--~~v~s~~~A~~a~~~-GaD~vV 128 (320)
T cd04743 105 STY--LHVPSPGLLKQFLEN-GARKFI 128 (320)
T ss_pred EEE--EEeCCHHHHHHHHHc-CCCEEE
Confidence 777 567899999988876 999986
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=90.64 E-value=2 Score=42.27 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=47.0
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccc---cCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFL---MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~L---l~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~ 243 (436)
+.+...+-| +.+++|+|.||||+-...+ |+.. ....+.+..+|+.+++.+++||++-..- .+
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p-------~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~-------~~ 87 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRP-------GADPVSVEEELERVIPVLEALRGELDVLISVDTFR-------AE 87 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCC-------HH
Confidence 444444444 6678899999999633222 2211 2234566678888888888999888321 23
Q ss_pred HHHHHHHcCccEE
Q 013813 244 YAKMLEDAGCSLL 256 (436)
Q Consensus 244 ~ak~le~aG~d~I 256 (436)
.++.+.++|++.|
T Consensus 88 v~e~al~~G~~iI 100 (257)
T cd00739 88 VARAALEAGADII 100 (257)
T ss_pred HHHHHHHhCCCEE
Confidence 4555556688876
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=90.56 E-value=8.3 Score=37.47 Aligned_cols=134 Identities=11% Similarity=0.134 Sum_probs=87.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEE
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 231 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVK 231 (436)
..++..+|...|...+.+-.+.++. |+|.+-+-. | +|+- .+| | .+++++++ +.|+.|=
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi-----tfG------p----~~i~~i~~--~~~~DvH 74 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF-----TVG------A----IAIKQFPT--HCFKDVH 74 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc-----ccC------H----HHHHHhCC--CCCEEEE
Confidence 4678899999999999999987765 788765553 2 3431 122 3 34455543 4565554
Q ss_pred eccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhc
Q 013813 232 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 232 iRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~t 308 (436)
+= ..++.++++.+.++|+|.|++|.-... .. .+.+..+++.- ..=|..|=+ +..++++.++..
T Consensus 75 LM----v~~P~~~i~~~~~aGad~It~H~Ea~~-------~~-~~~l~~Ik~~g~~~kaGlalnP~-Tp~~~i~~~l~~- 140 (228)
T PRK08091 75 LM----VRDQFEVAKACVAAGADIVTLQVEQTH-------DL-ALTIEWLAKQKTTVLIGLCLCPE-TPISLLEPYLDQ- 140 (228)
T ss_pred ec----cCCHHHHHHHHHHhCCCEEEEcccCcc-------cH-HHHHHHHHHCCCCceEEEEECCC-CCHHHHHHHHhh-
Confidence 21 245677889999999999999965321 11 25677777752 333444444 678889888885
Q ss_pred CcceeeeehHHhhCCcc
Q 013813 309 GCEGVLSAESLLENPAL 325 (436)
Q Consensus 309 GaDgVmIGRgal~nP~l 325 (436)
+|.|++=+ -||..
T Consensus 141 -vD~VLiMt---V~PGf 153 (228)
T PRK08091 141 -IDLIQILT---LDPRT 153 (228)
T ss_pred -cCEEEEEE---ECCCC
Confidence 89877654 35653
|
|
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.55 E-value=4.3 Score=39.64 Aligned_cols=109 Identities=15% Similarity=0.214 Sum_probs=73.4
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik 282 (436)
|=.+..+.+.+..+++.+++. ++.||+-| .++.+ -++...+.|+|.|-+|-......... .....+.+++
T Consensus 105 Gldv~~~~~~l~~~i~~L~~~-gIrVSLFi--dP~~~----qi~~A~~~GAd~VELhTG~yA~a~~~---~~~~el~~~~ 174 (239)
T PRK05265 105 GLDVAGQFDKLKPAIARLKDA-GIRVSLFI--DPDPE----QIEAAAEVGADRIELHTGPYADAKTE---AEAAELERIA 174 (239)
T ss_pred cchhhcCHHHHHHHHHHHHHC-CCEEEEEe--CCCHH----HHHHHHHhCcCEEEEechhhhcCCCc---chHHHHHHHH
Confidence 667778889999999999654 78888875 33322 34556789999999985543322111 1122233333
Q ss_pred ------hhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 283 ------NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 283 ------~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
...++-|-+..|++ ++.+..+....+..=|-||.+++.+
T Consensus 175 ~aa~~a~~lGL~VnAGHgLn-y~Nv~~i~~ip~i~EvnIGHsiia~ 219 (239)
T PRK05265 175 KAAKLAASLGLGVNAGHGLN-YHNVKPIAAIPGIEELNIGHAIIAR 219 (239)
T ss_pred HHHHHHHHcCCEEecCCCCC-HHhHHHHhhCCCCeEEccCHHHHHH
Confidence 34578888888885 6777776665688889999888764
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=90.45 E-value=2.8 Score=40.89 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=52.2
Q ss_pred HHHHc-CCCcEEEEecCCCchhhhcCccc-ccccCChHHHHHHHHHHhcccCccEEEEeccCCC--hhhHHHHHHHHHHc
Q 013813 176 ARRVE-PYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDA 251 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~~~~~~~~G-s~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~--~~d~~~~ak~le~a 251 (436)
|++++ .||++|=+--.+=. ..-|+- ..+ -..+.+.+.++.|...+++||+|-+..|.. ..+..+.++.++++
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a---~s~G~pD~~~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~a 97 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVA---ASLGYPDGGL-LTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERA 97 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHH---HHTTS-SSS--S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEechHHHH---HHcCCCCCCC-CCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHc
Confidence 45554 48999777521100 000111 112 245666788888888899999999998753 66788889999999
Q ss_pred CccEEEeccC
Q 013813 252 GCSLLAVHGR 261 (436)
Q Consensus 252 G~d~I~VHgR 261 (436)
|+.+|+|-..
T Consensus 98 G~agi~IEDq 107 (238)
T PF13714_consen 98 GAAGINIEDQ 107 (238)
T ss_dssp T-SEEEEESB
T ss_pred CCcEEEeecc
Confidence 9999999654
|
... |
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=1.5 Score=43.92 Aligned_cols=90 Identities=12% Similarity=0.202 Sum_probs=55.5
Q ss_pred HHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhh---CCC
Q 013813 213 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA---LRI 287 (436)
Q Consensus 213 v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~---~~i 287 (436)
+.+.++.+++.. ..+|.|-++ + .+-++.+.++|+|.|-+-.-+.+ +. +.+..+++. .++
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~---~----leea~~a~~agaDiI~LDn~~~e---------~l~~~v~~l~~~~~~~~~ 232 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE---S----LEDALKAAKAGADIIMLDNMTPE---------EIREVIEALKREGLRERV 232 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC---C----HHHHHHHHHcCcCEEEECCCCHH---------HHHHHHHHHHhcCcCCCE
Confidence 344555555443 244555432 2 33345566899998877544322 11 222333331 367
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
.+.++||| +.+.+.++.+ +|+|.+.+|.-..
T Consensus 233 ~leaSGGI-~~~ni~~yA~-tGvD~Is~galt~ 263 (278)
T PRK08385 233 KIEVSGGI-TPENIEEYAK-LDVDVISLGALTH 263 (278)
T ss_pred EEEEECCC-CHHHHHHHHH-cCCCEEEeChhhc
Confidence 89999999 7899999887 6999999996444
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.1 Score=45.19 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=59.8
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGa 310 (436)
.|.+...++++.+.+.|+++|.+-|-|.+... .+..-..+.++.+++.+ ++|||+.-|=.+.+++.++ .+..|+
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~-Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPT-LTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchh-cCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 45667788999999999999999888876321 11111234456666665 5888864444444444433 344699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|++|+-...|..|.
T Consensus 101 d~il~v~PyY~k~~ 114 (299)
T COG0329 101 DGILVVPPYYNKPS 114 (299)
T ss_pred CEEEEeCCCCcCCC
Confidence 99999998888887
|
|
| >cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=90.21 E-value=5.7 Score=41.64 Aligned_cols=142 Identities=15% Similarity=0.227 Sum_probs=94.2
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHHc-CCCcEEEE--ecC----CCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRVE-PYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v~-~g~D~IdL--N~G----CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++||+..+. |-+|+++++.+..+. .|.|.|-= |+. ||. .++...+.+.++...+.
T Consensus 121 v~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~a~~~a~~~a~~e 188 (391)
T cd08209 121 VHDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPA------------LERIRACRPVLQEVYEQ 188 (391)
T ss_pred CCCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCH------------HHHHHHHHHHHHHHHHh
Confidence 46899999886 567999999996554 46776522 222 443 23444555566666666
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh--hCCCcEEE----cc----
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLA----NG---- 293 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~--~~~iPVia----nG---- 293 (436)
++.....=..+..+.++..+-++.+.+.|+..+-|..-+ .-|..+..+++ ..++||.+ .|
T Consensus 189 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~ 258 (391)
T cd08209 189 TGRRTLYAVNLTGPVFTLKEKARRLVEAGANALLFNVFA----------YGLDVLEALASDPEINVPIFAHPAFAGALYG 258 (391)
T ss_pred hCCcceEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeccc----------cchHHHHHHHhcCcCCcEEEecCCccccccc
Confidence 776655555565566888888999999999988765332 22456777776 45777762 33
Q ss_pred ----CCCCHHHHHHHHHhcCcceeeeehH
Q 013813 294 ----NVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 294 ----GI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
||...--..++++..|+|.+.++..
T Consensus 259 ~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 259 SPDYGIAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCccccCCc
Confidence 5544445677778889999987754
|
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=10 Score=40.39 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC---hhhHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN---LQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~---~~d~~ 242 (436)
..+.+.+.. .++.|+|.|=+-...-....+...+ ..+.+.+.++.+++ .++.|.+.+..-.. .+...
T Consensus 10 ag~~e~l~a---Ai~~GADaVY~G~~~~~~R~~~~~f------~~edl~eav~~ah~-~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 10 AGTLKNMRY---AFAYGADAVYAGQPRYSLRVRNNEF------NHENLALGINEAHA-LGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred CCCHHHHHH---HHHCCCCEEEECCCccchhhhccCC------CHHHHHHHHHHHHH-cCCEEEEEecCcCCHHHHHHHH
Confidence 344554443 3567999998854322211111111 23556666666544 46777777655433 33455
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEcc--CCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianG--GI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.+.+.|+|+|+|. |+..+..+++. .++||.+.- .|.+...+..+.+ .|++.|.+.|-+
T Consensus 80 ~~l~~l~~~gvDgvIV~--------------d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~-lG~~rvvLSrEL 144 (443)
T PRK15452 80 RDLEPVIAMKPDALIMS--------------DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQ-MGLTRVILSREL 144 (443)
T ss_pred HHHHHHHhCCCCEEEEc--------------CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHH-CCCcEEEECCcC
Confidence 66777789999999884 34556666664 366776544 4666666655554 477777777654
|
|
| >cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III | Back alignment and domain information |
|---|
Probab=90.11 E-value=5.8 Score=41.89 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=93.9
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCcEEEE--ec----CCCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NL----GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v-~~g~D~IdL--N~----GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++|++.-+. |-+|+++++.+..+ ..|.|.|-= |+ -||. .++...+.+.++...+.
T Consensus 128 v~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~------------~~Rv~~~~~a~~~a~~e 195 (412)
T cd08213 128 IKDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRF------------EERAKESLKARDKAEAE 195 (412)
T ss_pred CCCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCH------------HHHHHHHHHHHHHHHHh
Confidence 46899998875 56799999999655 456676521 23 2443 23445566666666666
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh---hCCCcEEE----cc---
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLA----NG--- 293 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~---~~~iPVia----nG--- 293 (436)
++.....=..+..+.++..+-++.+.+.|+..+-|..-+. -|..+..+++ ..++||.+ .|
T Consensus 196 TG~~~~y~~NiT~~~~em~~ra~~a~e~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ihaHra~~ga~~ 265 (412)
T cd08213 196 TGERKAYLANITAPVREMERRAELVADLGGKYVMIDVVVA----------GWSALQYLRDLAEDYGLAIHAHRAMHAAFT 265 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEEeecccc----------ChHHHHHHHHhccccCeEEEECCCcceecc
Confidence 7766555555555578888889999999998876643332 2455666665 45678776 22
Q ss_pred -----CCCCHHHHHHHHHhcCcceeeeehH
Q 013813 294 -----NVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 294 -----GI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
||.. .-..++++..|+|.+.++..
T Consensus 266 r~~~~Gis~-~~l~kl~RLaGaD~ih~~t~ 294 (412)
T cd08213 266 RNPRHGISM-LVLAKLYRLIGVDQLHIGTA 294 (412)
T ss_pred cCCcCcCcH-HHHHHHHHHcCCCccccCCc
Confidence 6654 46677788889999988754
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits. |
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=90.04 E-value=5.7 Score=38.64 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=74.1
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik 282 (436)
|=.+..+.+.+.++++.+++. ++.||+-|- ++. +-++...+.|++.|-+|-......... ......+.+++
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiD--Pd~----~qi~~A~~~GAd~VELhTG~Ya~a~~~--~~~~~el~~i~ 172 (234)
T cd00003 102 GLDVAGQAEKLKPIIERLKDA-GIRVSLFID--PDP----EQIEAAKEVGADRVELHTGPYANAYDK--AEREAELERIA 172 (234)
T ss_pred cchhhcCHHHHHHHHHHHHHC-CCEEEEEeC--CCH----HHHHHHHHhCcCEEEEechhhhcCCCc--hhHHHHHHHHH
Confidence 667788899999999999755 788888743 332 235566799999999985543322111 11011233332
Q ss_pred ------hhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 283 ------NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 283 ------~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
...++-|-+..|++ ++.+..+.+..+..=|-||.+++.+
T Consensus 173 ~aa~~a~~~GL~VnAGHgLn-y~Nv~~i~~ip~i~ElnIGHsiia~ 217 (234)
T cd00003 173 KAAKLARELGLGVNAGHGLN-YENVKPIAKIPGIAELNIGHAIISR 217 (234)
T ss_pred HHHHHHHHcCCEEecCCCCC-HHHHHHHHhCCCCeEEccCHHHHHH
Confidence 34577787777875 7888877777788899999888764
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.3 Score=44.11 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=57.5
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGa 310 (436)
.|.+...++++.+.+.|+++|.+.|-+.+... .+..-..+.++.+.+.+ ++||++.=|=.+.+++.+.. +..|+
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~-ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Ga 97 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQL-MSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGM 97 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcchhh-CCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCC
Confidence 35566778899999999999999888775321 11111223444445544 58887655544555555543 34699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+.-..+..|.
T Consensus 98 dav~~~~P~y~~~~ 111 (280)
T PLN02417 98 HAALHINPYYGKTS 111 (280)
T ss_pred CEEEEcCCccCCCC
Confidence 99999988777664
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.1 Score=43.99 Aligned_cols=90 Identities=7% Similarity=0.026 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHHcCccEEE---eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLA---VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~---VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.+...+.|+.++++|+..+- .-.||......+.|.--+..+.++++..++|++. .|.+.+++..+.+ .+|.+
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e--~vdil 102 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD--YLDVI 102 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh--cCCEE
Confidence 456778889999999987762 2456654322222333466777888888999998 8999999998776 59999
Q ss_pred eeehHHhhCCccchhhh
Q 013813 314 LSAESLLENPALFAGFR 330 (436)
Q Consensus 314 mIGRgal~nP~lf~~i~ 330 (436)
.||...+.|..+...+.
T Consensus 103 qIgs~~~~n~~LL~~va 119 (250)
T PRK13397 103 QVGARNMQNFEFLKTLS 119 (250)
T ss_pred EECcccccCHHHHHHHH
Confidence 99999999999887664
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.52 E-value=3.2 Score=39.32 Aligned_cols=43 Identities=12% Similarity=0.317 Sum_probs=32.3
Q ss_pred HHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 278 IKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 278 i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++.+++. .++-|-.-|||. ++.+.++.+. ||+.+..|++.+.-
T Consensus 160 V~~lR~kyp~l~ievDGGv~-~~ti~~~a~A-GAN~iVaGsavf~a 203 (224)
T KOG3111|consen 160 VEWLREKYPNLDIEVDGGVG-PSTIDKAAEA-GANMIVAGSAVFGA 203 (224)
T ss_pred HHHHHHhCCCceEEecCCcC-cchHHHHHHc-CCCEEEecceeecC
Confidence 4556644 455566999996 6888888886 99999999887543
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=89.51 E-value=24 Score=35.20 Aligned_cols=196 Identities=17% Similarity=0.130 Sum_probs=106.6
Q ss_pred EEEccCC---CCCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhhh----hhhccCCCCCEEEEecCCCHHHHHH
Q 013813 105 LIVAPMV---DNSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRNE----EFATCKEDRPLFVQFCANDPEILLN 174 (436)
Q Consensus 105 i~lAPM~---gvtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~~----~~~~~~~e~plivQL~g~d~e~~~~ 174 (436)
.++.|+- .+-...+|++++.+ |++.++.--.+.....-+...+.. ..+......|++++++. +.++..+
T Consensus 12 a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~ 90 (296)
T TIGR03249 12 FPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIE 90 (296)
T ss_pred eeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHH
Confidence 3455663 24557788887765 776554211111111111112211 12233456899999975 6777777
Q ss_pred HHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH-c-
Q 013813 175 AARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED-A- 251 (436)
Q Consensus 175 AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~-a- 251 (436)
.++.+++ |+|+|-+- .|. | ...+.+-+.+-.+.|.+++++||.+=-|.|.+.. .++...+.+ .
T Consensus 91 ~a~~a~~~Gadav~~~--pP~-------y---~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~--~~~~~~La~~~~ 156 (296)
T TIGR03249 91 IARLAEKAGADGYLLL--PPY-------L---INGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLN--ADTLERLADRCP 156 (296)
T ss_pred HHHHHHHhCCCEEEEC--CCC-------C---CCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCC--HHHHHHHHhhCC
Confidence 7877765 99999774 343 1 1123466777788888888999988766654322 233333432 3
Q ss_pred CccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEcc-CCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANG-NVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 252 G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianG-GI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.+.+|- + . ..|+..+.++.+..+ --.+.+| +..+ ..+...+.. |++|++.|-+.+ .|.++.++
T Consensus 157 nvvgiK------d---s---~~d~~~~~~~~~~~~~~~~v~~G~~~~d-~~~~~~~~~-Ga~G~is~~~n~-~P~~~~~~ 221 (296)
T TIGR03249 157 NLVGFK------D---G---IGDMEQMIEITQRLGDRLGYLGGMPTAE-VTAPAYLPL-GVTSYSSAIFNF-IPHIARAF 221 (296)
T ss_pred CEEEEE------e---C---CCCHHHHHHHHHHcCCCeEEEeCCCcch-hhHHHHHhC-CCCEEEecHHHh-hHHHHHHH
Confidence 222221 1 1 235666666665542 1233444 2222 233444554 999999885544 46665554
Q ss_pred h
Q 013813 330 R 330 (436)
Q Consensus 330 ~ 330 (436)
-
T Consensus 222 ~ 222 (296)
T TIGR03249 222 Y 222 (296)
T ss_pred H
Confidence 3
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.4 Score=39.62 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHH----HHHhcCcceee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK----CLEETGCEGVL 314 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~----~l~~tGaDgVm 314 (436)
+...++++.+.+.|++.|.+........... ...++.+..+++..++|++++..+.+..+... .....|+|+|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 5677889999999999998865544322211 12224567777778999999998887776542 44456999999
Q ss_pred eehHHh
Q 013813 315 SAESLL 320 (436)
Q Consensus 315 IGRgal 320 (436)
+.-...
T Consensus 90 l~~~~~ 95 (200)
T cd04722 90 IHGAVG 95 (200)
T ss_pred EeccCC
Confidence 986553
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.35 E-value=8.2 Score=40.71 Aligned_cols=141 Identities=17% Similarity=0.179 Sum_probs=92.6
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCcEEEE--ecC----CCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v-~~g~D~IdL--N~G----CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++|++.-+. |-+|+++++++..+ ..|.|.|-= |+. ||. .++...+.+.++...+.
T Consensus 131 v~~RPL~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 198 (407)
T PRK09549 131 VHDRPLLMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPF------------EKRIVAGKEVLQEVYET 198 (407)
T ss_pred CCCCceEEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCH------------HHHHHHHHHHHHHHHHh
Confidence 46899998866 66899999999655 446776532 232 333 23445555666666666
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh--hCCCcEEE----cc----
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLA----NG---- 293 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~--~~~iPVia----nG---- 293 (436)
++.....=..+..+.++..+-++.+.+.|+..+-+..-+. -|..+..+++ ..++||.+ .|
T Consensus 199 TG~~~~y~~NiT~~~~em~~ra~~a~~~G~~~~m~~~~~~----------G~~al~~l~~~~~~~lpIhaHra~~ga~~r 268 (407)
T PRK09549 199 TGHKTLYAVNLTGRTFELKEKAKRAAEAGADALLFNVFAY----------GLDVLQSLAEDPEIPVPIMAHPAVSGAYTP 268 (407)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHcCCCeEEEecccc----------chHHHHHHHhcCCCCcEEEecCCccccccc
Confidence 7766655555655567788888889999998886654322 2455666766 34677662 23
Q ss_pred ----CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 294 ----NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 294 ----GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
||...--.-++++..|+|.+.++.
T Consensus 269 ~~~~Gis~~~~l~kl~RLaGaD~~~~~~ 296 (407)
T PRK09549 269 SPLYGISSPLLLGKLLRYAGADFSLFPS 296 (407)
T ss_pred CCCCcCcHHHHHHHHHHHcCCCccccCC
Confidence 555444466777778999999875
|
|
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.32 E-value=6.2 Score=38.49 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=72.5
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCC-ccCHHHHHH-
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKA- 280 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g-~ad~~~i~~- 280 (436)
|=.+..+.+.+.++++.+++. ++.||+-| .++. +-++...+.|+|.|-+|-........... ...++.+..
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~-gI~VSLFi--DP~~----~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~a 174 (237)
T TIGR00559 102 GLDVARLKDKLCELVKRFHAA-GIEVSLFI--DADK----DQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKA 174 (237)
T ss_pred CchhhhCHHHHHHHHHHHHHC-CCEEEEEe--CCCH----HHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHH
Confidence 666777889999999999654 78888774 3332 23556679999999998554332211100 111222222
Q ss_pred --HHhhCCCcEEEccCCCCHHHHHHHHHhcC-cceeeeehHHhhC
Q 013813 281 --VKNALRIPVLANGNVRHMEDVQKCLEETG-CEGVLSAESLLEN 322 (436)
Q Consensus 281 --ik~~~~iPVianGGI~s~eda~~~l~~tG-aDgVmIGRgal~n 322 (436)
.....++-|-+.-|++ ++.+..+.+..+ .+=|-||.+++.+
T Consensus 175 a~~A~~lGL~VnAGHgLn-y~Nv~~i~~~~~~i~EvnIGHsiia~ 218 (237)
T TIGR00559 175 SVHAHSLGLKVNAGHGLN-YHNVKYFAEILPYLDELNIGHAIIAD 218 (237)
T ss_pred HHHHHHcCCEEecCCCCC-HHhHHHHHhCCCCceEEecCHHHHHH
Confidence 2234578888877875 677777766655 8889999888764
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=89.32 E-value=5.2 Score=39.67 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE-Eec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-KIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV-KiR 233 (436)
.+.|+++ +...|.- .|++++ .|+|.|= .|....++.-| |-+-+--..+.+...+++|++....|+.| .+-
T Consensus 13 ~g~~i~m-~tayD~~----sA~i~~~aG~d~il--vGdSlgm~~lG-~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmP 84 (263)
T TIGR00222 13 QEEKIVA-ITAYDYS----FAKLFADAGVDVIL--VGDSLGMVVLG-HDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLP 84 (263)
T ss_pred CCCcEEE-EeccCHH----HHHHHHHcCCCEEE--ECccHhHHhcC-CCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 3445443 4444432 244554 5899887 44444443333 44444456677888888888874333322 222
Q ss_pred c-C-CChhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE---------E--ccCC----
Q 013813 234 V-F-PNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL---------A--NGNV---- 295 (436)
Q Consensus 234 l-g-~~~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi---------a--nGGI---- 295 (436)
. + .+.++.++-+.++ +++|+++|.+-|.. ...+.++.+.+ .+|||+ + .||.
T Consensus 85 f~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~----------~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qg 153 (263)
T TIGR00222 85 FMSYATPEQALKNAARVMQETGANAVKLEGGE----------WLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQG 153 (263)
T ss_pred cCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcH----------hHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecC
Confidence 1 1 1356666656554 55999999987641 11233444433 478888 3 3655
Q ss_pred CCHHHHHHHH------HhcCcceeee
Q 013813 296 RHMEDVQKCL------EETGCEGVLS 315 (436)
Q Consensus 296 ~s~eda~~~l------~~tGaDgVmI 315 (436)
++.+.+.+++ ++.||+++.+
T Consensus 154 rt~~~a~~~i~~A~a~e~AGA~~ivl 179 (263)
T TIGR00222 154 KDEEAAKKLLEDALALEEAGAQLLVL 179 (263)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3445444443 2348998865
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.7 Score=43.43 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=59.7
Q ss_pred ChhhHHHHHHHHHH-cCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCc
Q 013813 237 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~-aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGa 310 (436)
+.+....+++.+.+ .|++.|.+-|-+.+... .+..-..+.++.+.+.+ ++||++.=|-.+.+++.++. ++.||
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~-Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFL-LSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGY 100 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCcccccc-CCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 55667788999999 99999999887765321 11111234455555554 58988766656667765543 44699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+--..+..|.
T Consensus 101 d~v~v~~P~y~~~~ 114 (293)
T PRK04147 101 DAISAVTPFYYPFS 114 (293)
T ss_pred CEEEEeCCcCCCCC
Confidence 99999988887764
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=88.98 E-value=1.5 Score=44.24 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGaD 311 (436)
|.+....+++.+.+.|+++|.+-|-|.+... .+..-..+.++.+++.+ ++|||+.-+=.+.+++.++. +..|+|
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~-Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECAT-LTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccchh-CCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 4566678889999999999999888776321 11111123444555544 58988666555556665544 345999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+--..+..|.
T Consensus 106 ~vlv~~P~y~~~~ 118 (309)
T cd00952 106 GTMLGRPMWLPLD 118 (309)
T ss_pred EEEECCCcCCCCC
Confidence 9999988766663
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=88.97 E-value=5 Score=41.11 Aligned_cols=159 Identities=22% Similarity=0.269 Sum_probs=74.7
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEec-------CCCchhhhcCcccccccCCh----HHHHHHHHHHhc-cc
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINL-------GCPQRIARRGNYGAFLMDNL----PLVKSLVEKLAL-NL 224 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~-------GCP~~~~~~~~~Gs~Ll~~p----~~v~eIv~av~~-~~ 224 (436)
.|+++ -.|- +...++++.+ ..|+.+|++-- |-|.+...+.--..++++.. .-+...++.+++ ..
T Consensus 57 NPi~l-AsG~--~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~ 133 (335)
T TIGR01036 57 NPLGL-AAGF--DKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARY 133 (335)
T ss_pred CCcEe-CCcc--CCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccC
Confidence 57776 3343 3344455443 45899999863 22222111110012222221 123444444433 23
Q ss_pred CccEEEEeccC---CChhhHHHHHHHHHHcC--ccEEEe--ccCcc-cccCCCCCccCHHHHHHHHhhCC-------CcE
Q 013813 225 NVPVSCKIRVF---PNLQDTIKYAKMLEDAG--CSLLAV--HGRTR-DEKDGKKFRADWNAIKAVKNALR-------IPV 289 (436)
Q Consensus 225 ~iPVsVKiRlg---~~~~d~~~~ak~le~aG--~d~I~V--HgRt~-~~~~~~~g~ad~~~i~~ik~~~~-------iPV 289 (436)
+.||.|-+-.. .......++++.++.++ +|+|.+ +.-.. ..........-.+.++.+++.++ +||
T Consensus 134 ~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv 213 (335)
T TIGR01036 134 KGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPV 213 (335)
T ss_pred CCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCce
Confidence 45655554221 11122345555555555 999977 22211 11111000112344566666554 887
Q ss_pred E--EccCCC--CHHHHHHHHHhcCcceeeeehHH
Q 013813 290 L--ANGNVR--HMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 290 i--anGGI~--s~eda~~~l~~tGaDgVmIGRga 319 (436)
+ ..-++. +..++.+.+...|+|||.+.--+
T Consensus 214 ~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 214 LVKIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 6 455554 35666665666799999875444
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.91 E-value=27 Score=35.01 Aligned_cols=195 Identities=17% Similarity=0.104 Sum_probs=105.1
Q ss_pred EEccCCC---CCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhhh----hhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 106 IVAPMVD---NSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRNE----EFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 106 ~lAPM~g---vtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~~----~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
++.|+-. +-...+|.+++.+ |++.++.--.+.....-+...+.. ..+......|+++++++ +.++..+.
T Consensus 15 ~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~ 93 (303)
T PRK03620 15 PVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEY 93 (303)
T ss_pred eeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHH
Confidence 4445532 3335677777655 776554222222211111112111 12233566899999975 77888888
Q ss_pred HHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHH-HcC-
Q 013813 176 ARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE-DAG- 252 (436)
Q Consensus 176 A~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le-~aG- 252 (436)
++.+++ |+|+|-+-. |. |- ....+.+.+-.+++.+.+++||.+=-+.+.+. ..+....+. +.+
T Consensus 94 ~~~a~~~Gadav~~~p--P~-------y~---~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l--~~~~l~~L~~~~pn 159 (303)
T PRK03620 94 AQAAERAGADGILLLP--PY-------LT---EAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVL--TADTLARLAERCPN 159 (303)
T ss_pred HHHHHHhCCCEEEECC--CC-------CC---CCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCC--CHHHHHHHHhhCCC
Confidence 887765 999997742 32 11 12357778888888888899999876554321 123333343 432
Q ss_pred ccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc-EEEccCCCCHHH-HHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 253 CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMED-VQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 253 ~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP-VianGGI~s~ed-a~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+.+|- + . ..|+..+.++.+..+-. .+.+|. .+.+. +..++. .|++|.+.|-+.+ .|.++.++-
T Consensus 160 i~giK------~---s---~~d~~~~~~~~~~~~~~f~vl~G~-d~~e~~~~~~~~-~G~~G~is~~an~-~P~~~~~l~ 224 (303)
T PRK03620 160 LVGFK------D---G---VGDIELMQRIVRALGDRLLYLGGL-PTAEVFAAAYLA-LGVPTYSSAVFNF-VPEIALAFY 224 (303)
T ss_pred EEEEE------e---C---CCCHHHHHHHHHHcCCCeEEEeCC-CcchhhHHHHHh-CCCCEEEecHHhh-hHHHHHHHH
Confidence 22221 1 1 23456666666554212 334443 11122 233444 4999998876654 366666554
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.78 E-value=1.7 Score=43.46 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=45.7
Q ss_pred CHHHHH-HHHHHHcCCCcEEEEecCCCchhhhcCcccccccC---ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHH
Q 013813 168 DPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD---NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~-~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~---~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~ 243 (436)
+++... +|.+.+++|+|.|||+.-+-. -|+.... ..+++..+|+++++..++||+|-..- .+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTr-------Pg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~-------~~ 101 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTR-------PGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSK-------PE 101 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCC-------HH
Confidence 444444 444677889999999953211 1222222 23446668888887778999988432 23
Q ss_pred HHHHHHHcCccEE
Q 013813 244 YAKMLEDAGCSLL 256 (436)
Q Consensus 244 ~ak~le~aG~d~I 256 (436)
.++.+.++|++.|
T Consensus 102 va~~AL~~GadiI 114 (282)
T PRK11613 102 VIRESAKAGAHII 114 (282)
T ss_pred HHHHHHHcCCCEE
Confidence 4555556677765
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.77 E-value=4.9 Score=38.54 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=78.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+.|+|.=|.+.++++....++.+ +.|++.|||-+-.|. ..+.++.+++... -+.+. .|
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~------------------a~e~I~~l~~~~p-~~lIG--AG 70 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA------------------ALEAIRALAKEFP-EALIG--AG 70 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCC------------------HHHHHHHHHHhCc-ccEEc--cc
Confidence 47899889999999999999765 568999999987665 3455666665543 12222 22
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+.-+.. -++.+.++|+++| |+.. .+-+.++.. ...++|++ =|+.|+.++...++. |++.+=
T Consensus 71 -TVL~~~-q~~~a~~aGa~fi-VsP~-----------~~~ev~~~a-~~~~ip~~--PG~~TptEi~~Ale~-G~~~lK 131 (211)
T COG0800 71 -TVLNPE-QARQAIAAGAQFI-VSPG-----------LNPEVAKAA-NRYGIPYI--PGVATPTEIMAALEL-GASALK 131 (211)
T ss_pred -cccCHH-HHHHHHHcCCCEE-ECCC-----------CCHHHHHHH-HhCCCccc--CCCCCHHHHHHHHHc-Chhhee
Confidence 122222 2556778999987 3322 233444433 33456654 589999999999996 888653
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=88.75 E-value=2.1 Score=39.61 Aligned_cols=94 Identities=16% Similarity=0.346 Sum_probs=55.5
Q ss_pred HHHHHHHHhcccC-c-cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhh-CCCc
Q 013813 213 VKSLVEKLALNLN-V-PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIP 288 (436)
Q Consensus 213 v~eIv~av~~~~~-i-PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~-~~iP 288 (436)
+.+.++.+++..+ . +|.|-++ +.++ ++.+.++|+|.|-+-.-+.+ ++ +.+..++.. .++.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~---~~ee----~~ea~~~g~d~I~lD~~~~~---------~~~~~v~~l~~~~~~v~ 129 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE---NLEE----AEEALEAGADIIMLDNMSPE---------DLKEAVEELRELNPRVK 129 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES---SHHH----HHHHHHTT-SEEEEES-CHH---------HHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHhCCCCceEEEEcC---CHHH----HHHHHHhCCCEEEecCcCHH---------HHHHHHHHHhhcCCcEE
Confidence 4566666666552 2 3666543 2233 44566799999977533211 11 223333322 3688
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|.++|||+ .+.+.++.+ +|+|.+.+|.-.+.-|+
T Consensus 130 ie~SGGI~-~~ni~~ya~-~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 130 IEASGGIT-LENIAEYAK-TGVDVISVGSLTHSAPP 163 (169)
T ss_dssp EEEESSSS-TTTHHHHHH-TT-SEEEECHHHHSBE-
T ss_pred EEEECCCC-HHHHHHHHh-cCCCEEEcChhhcCCcc
Confidence 99999996 688888776 59999999976555444
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=88.72 E-value=27 Score=36.33 Aligned_cols=201 Identities=17% Similarity=0.184 Sum_probs=111.1
Q ss_pred HHHHhC--CCcEEEc---cCCCCCcHHHHHHHHHh---CCCeE-EeCcccchhhccChhhh---hhhhhccC----CCCC
Q 013813 96 HWTKLG--RPKLIVA---PMVDNSELPFRMLCRRY---GAEAA-YTPMLHSRIFTESEKYR---NEEFATCK----EDRP 159 (436)
Q Consensus 96 ~~~~lg--~~~i~lA---PM~gvtd~~fR~l~~~~---Ga~l~-~Temisa~~l~~~~~~~---~~~~~~~~----~e~p 159 (436)
.|+.+| .-|++.. |..+++-..|.+++.++ |+|.+ .-|......+...++.. ....+... ...+
T Consensus 121 ~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~ 200 (367)
T cd08205 121 LRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTL 200 (367)
T ss_pred HHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 555555 2345544 66789999999999877 66765 33333333232221111 11122222 2345
Q ss_pred EEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc----
Q 013813 160 LFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---- 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl---- 234 (436)
+++.+.+.. +++.+-++.+ +.|+|++-++... ||-.. ++.+++..++|+..=...
T Consensus 201 y~~nit~~~-~e~i~~a~~a~~~Gad~vmv~~~~---------~g~~~----------~~~l~~~~~lpi~~H~a~~ga~ 260 (367)
T cd08205 201 YAPNITGDP-DELRRRADRAVEAGANALLINPNL---------VGLDA----------LRALAEDPDLPIMAHPAFAGAL 260 (367)
T ss_pred EEEEcCCCH-HHHHHHHHHHHHcCCCEEEEeccc---------ccccH----------HHHHHhcCCCeEEEccCccccc
Confidence 667777665 7777777665 4599999998531 22111 112222335555443221
Q ss_pred ---CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-------C--CcEEEccCCCCHHHHH
Q 013813 235 ---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-------R--IPVLANGNVRHMEDVQ 302 (436)
Q Consensus 235 ---g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-------~--iPVianGGI~s~eda~ 302 (436)
........-+.+...-+|+|.+++.+-.. + . ...-+.+.++.+.. + .|+ .+||+. +..+.
T Consensus 261 ~~~~~~g~~~~~~~kl~RlaGad~~~~~~~~g--k--~--~~~~~~~~~la~~~~~~~~~iK~~~Pv-~sgG~~-~~~v~ 332 (367)
T cd08205 261 SRSPDYGSHFLLLGKLMRLAGADAVIFPGPGG--R--F--PFSREECLAIARACRRPLGGIKPALPV-PSGGMH-PGRVP 332 (367)
T ss_pred ccCCCCcCCHHHHHHHHHHcCCCccccCCCcc--C--c--CCCHHHHHHHHHHHhCccccCCCceee-ccCCCC-HHHHH
Confidence 11122445678888889999987743321 1 1 12234444454421 1 233 355665 58888
Q ss_pred HHHHhcCcce-eeeehHHhhCCc
Q 013813 303 KCLEETGCEG-VLSAESLLENPA 324 (436)
Q Consensus 303 ~~l~~tGaDg-VmIGRgal~nP~ 324 (436)
++++..|.|. +++|-+++..|+
T Consensus 333 ~l~~~~G~dv~~~~GGgi~gHp~ 355 (367)
T cd08205 333 ELYRDYGPDVILLAGGGILGHPD 355 (367)
T ss_pred HHHHHhCCcEEEEcCchhcCCCC
Confidence 9999889885 456778899997
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.44 Score=46.61 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=34.9
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
+++|++.|+|+. +++.++++...+||+.||++.+. +.-|.+
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl~-~~~f~~ 239 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASLK-AESFLD 239 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhhC-HHHHHH
Confidence 589999999997 99999999866999999999984 555544
|
The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea. |
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=20 Score=36.26 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=79.7
Q ss_pred CCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg 235 (436)
.|+..-+...+++++.+.+ +.++.|+..+-|-+| | +.-.+.++++++.++ +.+.+--.-+
T Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~-----------------~~d~~~v~avr~~~~~~~l~vDaN~~ 180 (321)
T PRK15129 119 VTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-N-----------------HLISERMVAIRSAVPDATLIVDANES 180 (321)
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-C-----------------chHHHHHHHHHHhCCCCeEEEECCCC
Confidence 3444445456777766555 456779999888752 1 011255667776652 3344444447
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
|+.+++..+++.+++.++.+| +|... ..+++.++... .++||.+.=.+.+.+|+.++. ..+|.|.+
T Consensus 181 w~~~~A~~~~~~l~~~~i~~i-------EqP~~---~~~~~~l~~~~--~~~pia~dEs~~~~~d~~~~~--~~~d~v~~ 246 (321)
T PRK15129 181 WRAEGLAARCQLLADLGVAML-------EQPLP---AQDDAALENFI--HPLPICADESCHTRSSLKALK--GRYEMVNI 246 (321)
T ss_pred CCHHHHHHHHHHHHhcCceEE-------ECCCC---CCcHHHHHHhc--cCCCEecCCCCCCHHHHHHHH--hhCCEEEe
Confidence 888899999999999988877 22111 12444444332 479999988999999998874 25666543
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=88.64 E-value=23 Score=35.02 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCCHHHHHHHH----HHHc-CCCcEEEE-ecC-CCchhhhcCcccccccCChHH---HHHHHHHHhcccCccEEEEeccC
Q 013813 166 ANDPEILLNAA----RRVE-PYCDYVDI-NLG-CPQRIARRGNYGAFLMDNLPL---VKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 166 g~d~e~~~~AA----~~v~-~g~D~IdL-N~G-CP~~~~~~~~~Gs~Ll~~p~~---v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+.+.+++.+.| +.++ .|+|+|-+ |++ -|... --.|+. +..|+.+++..+++|+.|- +.
T Consensus 20 ~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~----------~~~p~tva~m~~i~~~v~~~~~~p~Gvn--vL 87 (257)
T TIGR00259 20 DDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLK----------EVDPETVAAMAVIAGQLKSDVSIPLGIN--VL 87 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcC----------CCCHHHHHHHHHHHHHHHHhcCCCeeee--ee
Confidence 44555555554 2334 48999888 654 35432 113444 3456677888888997665 33
Q ss_pred C-ChhhHHHHHHHHHHcCccEEEeccCcc--cccCCCCCccCHHHHHHHHhhC--CCcEEEc---------cCCCCHHHH
Q 013813 236 P-NLQDTIKYAKMLEDAGCSLLAVHGRTR--DEKDGKKFRADWNAIKAVKNAL--RIPVLAN---------GNVRHMEDV 301 (436)
Q Consensus 236 ~-~~~d~~~~ak~le~aG~d~I~VHgRt~--~~~~~~~g~ad~~~i~~ik~~~--~iPVian---------GGI~s~eda 301 (436)
+ +...++.+ +...|+++|-+-.-+. ....+.- ..+-..+-+.++.+ ++.|+++ ++..-.+.+
T Consensus 88 ~nd~~aal~i---A~a~ga~FIRv~~~~g~~~~d~G~~-~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a 163 (257)
T TIGR00259 88 RNDAVAALAI---AMAVGAKFIRVNVLTGVYASDQGII-EGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIA 163 (257)
T ss_pred cCCCHHHHHH---HHHhCCCEEEEccEeeeEecccccc-cccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHH
Confidence 2 33444444 4589999996622111 1111110 12223334444443 3444432 233333446
Q ss_pred HHHHHhcCcceeeee
Q 013813 302 QKCLEETGCEGVLSA 316 (436)
Q Consensus 302 ~~~l~~tGaDgVmIG 316 (436)
+.......+|+|.+.
T Consensus 164 ~~~~~~~~aDavivt 178 (257)
T TIGR00259 164 LDTVERGLADAVILS 178 (257)
T ss_pred HHHHHhcCCCEEEEC
Confidence 666666569999875
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK02412 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=19 Score=35.30 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=63.9
Q ss_pred CEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~ 236 (436)
.+++-|.|.+.+++.+.++.+ ..++|.||+=+.. +.. +.+.+.+.+++..+++.. ++|+.+=+|.-+
T Consensus 17 ~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~---------l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~ 85 (253)
T PRK02412 17 KIIVPIMGKTLEEVLAEALAISKYDADIIEWRADF---------LEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAK 85 (253)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEech---------hhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 467999999999998887655 4589999997631 111 124566777777777765 589998888721
Q ss_pred -------ChhhHHHHHHHHHHcC-ccEEEec
Q 013813 237 -------NLQDTIKYAKMLEDAG-CSLLAVH 259 (436)
Q Consensus 237 -------~~~d~~~~ak~le~aG-~d~I~VH 259 (436)
+.++-.++.+.+.+.| +++|.|-
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiE 116 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVE 116 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3344456677777888 8999885
|
|
| >PRK14567 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.64 Score=45.80 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+++|++.|+| +++.+.++++...+||+.||++.+ +|.-|.++
T Consensus 202 ~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~~I 243 (253)
T PRK14567 202 NIKIVYGGSL-KAENAKDILSLPDVDGGLIGGASL-KAAEFNEI 243 (253)
T ss_pred cceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHHHH
Confidence 5899999999 899999999987899999999987 56666554
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=88.43 E-value=23 Score=39.28 Aligned_cols=236 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHH--HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC----Ch
Q 013813 165 CANDPEILLNAA--RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP----NL 238 (436)
Q Consensus 165 ~g~d~e~~~~AA--~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~----~~ 238 (436)
+.+-|++..+.- +.++.|.|.|.|=.. +++.+.+...++.+++. +.-+.+-+-... +.
T Consensus 90 y~~ypd~vv~~~v~~A~~~Gvd~irif~~---------------lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~ 153 (592)
T PRK09282 90 YRHYPDDVVEKFVEKAAENGIDIFRIFDA---------------LNDVRNMEVAIKAAKKA-GAHVQGTISYTTSPVHTI 153 (592)
T ss_pred cccccchhhHHHHHHHHHCCCCEEEEEEe---------------cChHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCH
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE----ccCCCCHHHHHHHHHhcCcceee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA----NGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia----nGGI~s~eda~~~l~~tGaDgVm 314 (436)
+...++++.+.++|++.|.+ ++.........-.++++.+++.+++||-. +.|.. ......+++. |||.|-
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i----~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla-~An~laAv~a-Gad~vD 227 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICI----KDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLA-PMTYLKAVEA-GVDIID 227 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEE----CCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcH-HHHHHHHHHh-CCCEEE
Q ss_pred -----eehHHhhCCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhcCC--HH
Q 013813 315 -----SAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQ--PG 387 (436)
Q Consensus 315 -----IGRgal~nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~R~hl~~~l~~~~~~~--~~ 387 (436)
+|.+. .||.+-.-+..-...............+-.+.+.+..+..+.+..........+ +.+. ++|. ..
T Consensus 228 ~ai~g~g~~a-gn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~~~~~~~~~v--~~~~-~pGg~~sn 303 (592)
T PRK09282 228 TAISPLAFGT-SQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFESEFTIVDTRV--LIHQ-VPGGMISN 303 (592)
T ss_pred eeccccCCCc-CCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCCccccCCccE--EEEc-CCCcHHHH
Q ss_pred HHHHHHhcchhc-HHHHHHHHHHHHHhcCCCCCCCCCcch
Q 013813 388 VREDLNAQNRLT-FEFLYNLVDRLRELGVRIPLYKKDADD 426 (436)
Q Consensus 388 ~r~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (436)
+...+.+..-.+ ++++.+-+.+..++-..+|++.+-|+.
T Consensus 304 l~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~Sq~ 343 (592)
T PRK09282 304 LVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTSQI 343 (592)
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChhHh
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.41 E-value=2.3 Score=42.18 Aligned_cols=104 Identities=14% Similarity=0.264 Sum_probs=63.4
Q ss_pred HHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcCccEEEeccCccccc---------------CCCCCccCHH
Q 013813 213 VKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWN 276 (436)
Q Consensus 213 v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG~d~I~VHgRt~~~~---------------~~~~g~ad~~ 276 (436)
+.+..+.++..-..-+..=+-.|+ +.+.+.++++.|.+.|+|.|-+-=-..++. .+.+....++
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~le 83 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLE 83 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHH
Confidence 344445554443333344444554 788999999999999999998832222211 1222234578
Q ss_pred HHHHHHhh-CCCcEEEccCCC-----CHHHHHHHHHhcCcceeeee
Q 013813 277 AIKAVKNA-LRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 277 ~i~~ik~~-~~iPVianGGI~-----s~eda~~~l~~tGaDgVmIG 316 (436)
+++++++. .++|++.=+=.+ -.+...+.+++.|+||+++-
T Consensus 84 l~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp 129 (265)
T COG0159 84 LVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP 129 (265)
T ss_pred HHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC
Confidence 88888854 788887554211 12343445556799999884
|
|
| >cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase | Back alignment and domain information |
|---|
Probab=88.15 E-value=24 Score=33.61 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=80.7
Q ss_pred EEEEecCC-CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC--
Q 013813 160 LFVQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-- 236 (436)
Q Consensus 160 livQL~g~-d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-- 236 (436)
+++.|.+. +.++..+.++... |+|.||+=+..= ... ..+.+.+.++.+++..++|+.+=+|.-+
T Consensus 2 i~~~i~~~~~~~e~~~~~~~~~-~aD~vElR~D~~---------~~~---~~~~~~~~~~~lr~~~~~piI~T~R~~~eG 68 (225)
T cd00502 2 ICVPLTGPDLLEEALSLLELLL-GADAVELRVDLL---------EDP---SIDDVAEQLSLLRELTPLPIIFTVRTKSEG 68 (225)
T ss_pred EEEEecCCCCHHHHHHHHHHhc-CCCEEEEEEeec---------ccc---chHHHHHHHHHHHHhCCCCEEEEEcccccC
Confidence 57888888 7777666665554 899999975421 110 1456777888888777789998888721
Q ss_pred -----ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC----CHHHHHHHH--
Q 013813 237 -----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR----HMEDVQKCL-- 305 (436)
Q Consensus 237 -----~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~----s~eda~~~l-- 305 (436)
+.++-.++.+.+.+.|+++|.|--.+ . .. -+.+..++ .-+..||++-=-+ +.++....+
T Consensus 69 G~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-~-------~~-~~~~~~~~-~~~~kiI~S~H~f~~tp~~~~l~~~~~~ 138 (225)
T cd00502 69 GNFEGSEEEYLELLEEALKLGPDYVDIELDS-A-------LL-EELINSRK-KGNTKIIGSYHDFSGTPSDEELVSRLEK 138 (225)
T ss_pred CCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-h-------HH-HHHHHHHH-hCCCEEEEEeccCCCCcCHHHHHHHHHH
Confidence 33455677777888899999885432 1 00 12222222 2466777766322 234443333
Q ss_pred -HhcCcceeeee
Q 013813 306 -EETGCEGVLSA 316 (436)
Q Consensus 306 -~~tGaDgVmIG 316 (436)
...|||.|=+.
T Consensus 139 ~~~~gadivKla 150 (225)
T cd00502 139 MAALGADIVKIA 150 (225)
T ss_pred HHHhCCCEEEEE
Confidence 33467766554
|
) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 436 | ||||
| 1vhn_A | 318 | Crystal Structure Of A Putative Flavin Oxidoreducta | 1e-19 | ||
| 3b0p_A | 350 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 8e-19 | ||
| 3b0v_C | 363 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 5e-17 |
| >pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318 | Back alignment and structure |
|
| >pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
| >pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 3e-57
Identities = 74/320 (23%), Positives = 142/320 (44%), Gaps = 28/320 (8%)
Query: 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPLF 161
K+ +APM ++ FR L +GA+ A++ M+ ++ S+K EE +R +
Sbjct: 5 VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQK--TEELLPQPHERNVA 62
Query: 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLPLVKSLVEKL 220
VQ ++P L AAR + ++D+N GCP +++ + G G L+ +L + +V +L
Sbjct: 63 VQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGA-GGALLKDLRHFRYIVREL 121
Query: 221 ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+++ S K R+ + + ++L + G + +H RT RA+W A+
Sbjct: 122 RKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV--VQSFTGRAEWKALSV 179
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF----AGFRTAEWIV 336
++ RIP +G++ ED ++ LEE+GC+G+L A + P +F R+ ++
Sbjct: 180 LEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSE 237
Query: 337 GSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEW-FRIQPG---VREDL 392
S E +LL++ E+ V +R + + G RE +
Sbjct: 238 PSREEILRTFERHLELLIKT--KGERKAV--VEMRKFLA-----GYTKDLKGARRFREKV 288
Query: 393 NAQNRLTFEFLYNLVDRLRE 412
+ L + +
Sbjct: 289 MKIE--EVQILKEMFYNFIK 306
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 3e-18
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 24/173 (13%)
Query: 103 PKLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSR--IFTESEK---YRNEEFATCKE 156
P+L VAPMVD ++ FR L R+ YT M + + E+ +R EE
Sbjct: 4 PRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEE------ 57
Query: 157 DRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 215
P+ +Q +DP+ L AAR E + D +++NLGCP A+ G YGA L+ +L V+
Sbjct: 58 -HPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVRE 116
Query: 216 LVEKLALNLNVPVSCKIRV-------FPNLQDTIKYAKMLEDAGCSLLAVHGR 261
+++ + + VPV+ K+R+ + L ++ + + +AG + VH R
Sbjct: 117 ILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSV---EAMAEAGVKVFVVHAR 166
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Length = 244 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 299
D + L GC+ V T KDG + +K V A PV+A+G V ++
Sbjct: 147 DLYETLDRLNKEGCARYVV---TDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLD 203
Query: 300 DVQKC--LEETGCEGVLSAESLLEN 322
D++ L G EG + ++L
Sbjct: 204 DLRAIAGLVPAGVEGAIVGKALYAK 228
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Length = 244 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-06
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 299
D + L+ GCS V T KDG + + + V + PV+A+G V ++
Sbjct: 150 DLWDVLERLDSEGCSRFVV---TDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLD 206
Query: 300 DVQKC--LEETGCEGVLSAESLLEN 322
D++ L G EG + ++L
Sbjct: 207 DLRAIATLTHRGVEGAIVGKALYAR 231
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 8e-06
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 240 DTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 297
T++ AK G + HG T + ++ D+ +K V ++ V+A GNV
Sbjct: 127 ATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVIT 186
Query: 298 MEDVQKCLEETGCEGV 313
+ ++ + + G
Sbjct: 187 PDMYKRVM-DLGVHCS 201
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A Length = 241 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 298
D + K L++ G + T EKDG D++ K + + VLA G +
Sbjct: 144 IDPVSLLKRLKEYGLEEIVH---TEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSE 200
Query: 299 EDVQK-----CLEETGCEGVLSAESLLEN 322
++ +GV+ + LE
Sbjct: 201 NSLKTAQKVHTETNGLLKGVIVGRAFLEG 229
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 35/231 (15%)
Query: 98 TKLGRPKLIVAPMVDNSELPFRMLCRR--YGAEAAYTPM----LHSRIFTESEKYRNEEF 151
P + + M + + A A P+ S + SE+ E
Sbjct: 52 LSSSSP-IFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSERLSYEIV 110
Query: 152 ATCKEDRPLFVQFCANDP-EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNL 210
+ +F + A + + + I+L Q I +F
Sbjct: 111 RKENPNGLIFANLGSEATAAQAKEAVEMIG--ANALQIHLNVIQEIVMPEGDRSF----- 163
Query: 211 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRT------ 262
+E++ ++VPV K F + + A L +AG + + + +G T
Sbjct: 164 SGALKRIEQICSRVSVPVIVKEVGFGMSKAS---AGKLYEAGAAAVDIGGYGGTNFSKIE 220
Query: 263 --RDEKDGKKFRADW-----NAIKAVKNAL-RIPVLANGNVRHMEDVQKCL 305
R ++ F W ++ +++ ++A+G ++ DV K +
Sbjct: 221 NLRRQRQISFFN-SWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAI 270
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Length = 311 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 29/181 (16%)
Query: 144 EKYRNEEFATCKE---DRPLFVQFCANDPEILLNAARRV--EPYCDYVDINLGCPQRIAR 198
E E+ E + P+ ++ + ++ +++N+ CP +
Sbjct: 82 EVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPN--VK 139
Query: 199 RGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA- 257
G G + + +LV+ VP+ K+ PN+ D + AK +E AG L
Sbjct: 140 HG--GQAFGTDPEVAAALVKACKAVSKVPLYVKLS--PNVTDIVPIAKAVEAAGADGLTM 195
Query: 258 ---VHGRTRDEKDGKKFRAD------WNAIK--------AVKNALRIPVLANGNVRHMED 300
+ G D K + A+ AIK V + IP++ G V + +D
Sbjct: 196 INTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQD 255
Query: 301 V 301
V
Sbjct: 256 V 256
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 9e-04
Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKD---GKKFRADWNA--IKAVKNALRIPVLAN 292
+T++ A+ +E AG +++ + + + + +K + +P++
Sbjct: 227 FAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTT 286
Query: 293 GNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
+ + L + V A L + L
Sbjct: 287 NRINDPQVADDILSRGDADMVSMARPFLADAEL 319
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* Length = 297 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 9e-04
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 241 TIKYAKMLEDAG-CSLLAVHGRTRD-EKDGKKFR-ADWNAIKAVKNALRIPVLANGNVRH 297
T + A + E+AG +++A+ D G R +D IK + A+ IPV+A + H
Sbjct: 30 TPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGH 89
Query: 298 MEDVQKCLEETGCEGVLSAESL 319
+ LE G + + +E L
Sbjct: 90 FVEAM-ILEAIGVDFIDESEVL 110
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 436 | |||
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 100.0 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 100.0 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 100.0 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 100.0 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 99.98 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 99.98 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 99.97 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 99.97 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.97 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.97 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.96 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 99.96 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.96 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.96 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.96 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 99.96 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.96 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.96 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.96 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.96 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 99.96 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.95 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.95 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 99.95 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 99.95 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 99.95 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.94 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.94 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 99.93 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 99.93 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.91 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.9 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.87 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 99.87 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.87 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.84 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.84 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.84 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.84 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 99.82 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.77 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.76 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.75 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.75 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.75 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.73 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.73 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.66 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.66 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.65 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.64 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.59 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.59 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.57 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.52 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.5 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.5 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.49 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.48 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.46 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 99.45 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.42 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.42 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.42 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.4 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.39 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.39 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.34 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.29 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.25 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 99.24 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.23 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.22 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.21 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.19 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.16 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.14 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 99.13 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.12 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 99.07 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 99.03 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 99.02 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 98.99 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.99 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 98.98 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.98 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 98.96 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 98.96 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.96 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 98.95 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 98.94 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 98.93 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 98.92 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 98.92 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.89 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 98.87 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 98.87 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.86 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 98.84 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 98.84 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 98.83 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 98.83 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.83 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.81 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.79 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.79 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.78 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.77 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.77 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 98.75 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 98.72 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.71 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 98.71 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 98.7 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.69 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.68 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 98.67 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 98.66 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 98.65 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 98.65 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 98.63 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 98.63 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 98.61 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 98.6 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.59 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.59 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 98.58 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 98.57 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 98.57 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.56 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.56 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 98.55 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 98.54 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 98.54 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.54 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.53 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.53 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 98.52 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.51 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 98.5 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 98.5 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.49 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 98.49 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.48 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 98.48 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.47 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.47 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.47 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.45 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 98.45 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 98.42 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 98.42 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.41 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.4 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 98.4 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 98.4 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 98.38 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.37 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 98.36 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 98.36 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 98.34 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.34 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.34 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 98.33 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 98.32 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 98.31 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.3 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 98.3 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.29 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 98.29 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 98.29 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 98.28 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 98.27 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 98.27 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 98.26 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 98.26 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 98.26 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.24 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 98.24 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.24 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.23 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.23 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 98.2 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 98.16 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 98.15 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.15 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.14 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 98.14 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 98.14 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.14 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 98.13 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 98.12 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.12 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 98.11 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 98.09 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.09 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 98.08 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 98.08 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 98.06 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 98.04 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.03 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 98.02 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 98.02 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.01 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 98.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 97.96 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.96 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 97.96 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 97.94 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 97.94 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 97.91 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.9 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 97.86 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 97.84 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 97.82 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 97.82 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 97.81 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 97.8 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.8 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 97.78 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.78 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.77 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.77 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 97.75 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.75 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 97.74 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.71 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 97.69 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 97.66 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 97.6 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.58 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 97.56 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 97.54 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.41 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 97.38 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.33 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 97.31 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 97.29 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.21 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.2 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 97.15 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 97.15 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 97.15 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.14 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.13 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.07 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.06 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 97.06 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 96.96 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 96.95 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 96.92 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 96.92 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 96.91 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 96.87 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 96.81 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 96.8 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 96.78 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.71 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 96.65 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 96.64 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 96.62 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 96.61 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.6 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 96.6 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.59 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 96.56 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 96.56 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 96.54 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 96.52 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 96.48 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 96.45 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.45 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 96.44 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 96.42 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 96.42 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 96.39 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 96.38 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 96.3 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 96.28 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.26 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 96.24 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 96.24 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 96.21 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 96.21 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 96.18 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 96.18 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.16 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 96.14 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 96.12 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 96.11 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 96.11 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 96.09 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 96.06 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 96.06 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 96.05 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 96.05 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 96.04 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 96.04 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 96.01 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.01 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 96.0 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 96.0 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 95.98 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.98 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 95.98 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 95.93 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 95.88 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 95.84 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 95.82 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 95.82 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 95.82 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 95.82 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.8 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 95.8 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.79 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 95.78 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.74 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 95.74 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 95.71 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 95.71 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 95.69 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 95.68 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.67 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 95.66 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 95.64 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 95.64 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 95.64 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 95.56 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.52 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 95.51 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 95.51 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 95.49 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 95.48 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 95.46 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 95.46 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 95.4 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 95.38 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.37 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.36 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 95.36 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 95.34 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 95.3 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.26 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 95.22 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 95.22 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 95.22 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 95.2 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 95.18 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 95.16 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 95.15 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 95.1 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 95.09 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 95.02 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.02 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 95.01 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 94.98 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 94.97 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 94.95 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 94.91 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 94.9 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 94.86 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 94.86 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 94.83 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 94.77 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 94.73 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 94.72 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 94.65 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 94.61 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 94.59 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 94.59 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 94.55 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 94.53 | |
| 2nwr_A | 267 | 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD | 94.52 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 94.51 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 94.5 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 94.48 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 94.48 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 94.47 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 94.47 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 94.46 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 94.35 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 94.28 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 94.27 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 94.23 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 94.23 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 94.19 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 94.18 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 94.12 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 94.09 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 94.09 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 94.02 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 93.98 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 93.96 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 93.93 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 93.88 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 93.88 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 93.87 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 93.85 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 93.82 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 93.75 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 93.75 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 93.74 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 93.7 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 93.67 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 93.65 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 93.61 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 93.59 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 93.56 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 93.5 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 93.32 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 93.26 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 93.25 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 93.24 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 93.12 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 92.98 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 92.95 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 92.83 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 92.81 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 92.76 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 92.69 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 92.66 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 92.59 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 92.58 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 92.48 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 92.37 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 92.26 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 92.23 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 92.14 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 92.13 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 92.09 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 92.07 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 92.05 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 92.03 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 92.01 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 91.84 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 91.66 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 91.61 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 91.53 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 91.35 | |
| 2pcq_A | 283 | Putative dihydrodipicolinate synthase; lyase, lysi | 91.3 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 91.11 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 91.09 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 91.04 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 90.77 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 90.76 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 90.75 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 90.72 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 90.65 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 90.64 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 90.63 | |
| 1lt8_A | 406 | Betaine-homocysteine methyltransferase; homocystei | 90.57 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 90.53 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 90.53 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 90.49 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 90.46 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 90.38 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 90.33 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 90.22 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 90.19 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 90.19 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 90.18 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 90.18 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 90.17 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 90.15 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 90.09 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 90.08 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 90.03 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 90.02 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 89.98 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 89.94 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 89.88 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 89.85 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 89.75 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 89.66 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 89.65 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 89.63 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 89.63 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 89.59 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 89.57 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 89.57 | |
| 3lg3_A | 435 | Isocitrate lyase; conserved, CD, proteomics eviden | 89.55 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 89.53 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 89.32 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 89.26 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 89.25 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 89.22 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 89.09 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 89.07 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 89.06 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 89.06 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 89.06 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 88.94 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 88.87 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 88.83 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 88.81 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 88.64 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 88.59 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 88.58 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 88.39 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 88.32 |
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-53 Score=428.25 Aligned_cols=300 Identities=24% Similarity=0.341 Sum_probs=257.3
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
++|+++|||+|+||.+||.+|+++|+ +++||||+++..+..+... .....++.+.|+++||+|++++++++||++++
T Consensus 3 ~nriv~APM~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~--~~~~~~~~~~p~~vQL~g~~p~~~~~aA~~a~ 80 (350)
T 3b0p_A 3 DPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRE--RLLAFRPEEHPIALQLAGSDPKSLAEAARIGE 80 (350)
T ss_dssp CCSEEECCCTTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHH--HHHCCCGGGCSEEEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHH--HHhccCCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 57999999999999999999999997 9999999998876443332 22345678899999999999999999998875
Q ss_pred -CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh----hhHHHHHHHHHHcCccE
Q 013813 181 -PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL----QDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 181 -~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~----~d~~~~ak~le~aG~d~ 255 (436)
.|+|+||||+|||..++++++||++|+++++++.+|++++++.+++||+||+|+|++. +++.++++.++++|+|+
T Consensus 81 ~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~ 160 (350)
T 3b0p_A 81 AFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKV 160 (350)
T ss_dssp HTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCE
T ss_pred HcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCE
Confidence 4899999999999999999999999999999999999999999999999999998653 36789999999999999
Q ss_pred EEeccCcccccCCC-----CCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 256 LAVHGRTRDEKDGK-----KFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 256 I~VHgRt~~~~~~~-----~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
|+||+|+..+.... ..+.+|++++++++.+ ++|||+||||.|++|+.++++ |||+|||||+++.|||+|.++
T Consensus 161 I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~--GaD~V~iGRa~l~~P~l~~~i 238 (350)
T 3b0p_A 161 FVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK--RVDGVMLGRAVYEDPFVLEEA 238 (350)
T ss_dssp EEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT--TSSEEEECHHHHHCGGGGTTH
T ss_pred EEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCcHHHHHH
Confidence 99999987531111 1146899999999998 999999999999999999996 899999999999999999999
Q ss_pred hhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHH
Q 013813 330 RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDR 409 (436)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~ 409 (436)
....|. ....++..+.++.+.+|++....++..+..+|||+.||++. +++...+|+.|+++. +.+++.+++++
T Consensus 239 ~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~kh~~~~~~g-~~~~~~~r~~l~~~~--~~~~~~~~l~~ 311 (350)
T 3b0p_A 239 DRRVFG----LPRRPSRLEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFRG-RPKGRLWRRLLSEGR--SLQALDRALRL 311 (350)
T ss_dssp HHHTTC----CSCCCCHHHHHHHHHHHHHHHHHHTCCHHHHHTTSTTTTTT-STTHHHHHHHHHHHC--SHHHHHHHHHH
T ss_pred HHHhcC----CCCCCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHcc-CCCHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 876552 23346777888888898876555666788999999988775 577889999999987 88999999998
Q ss_pred HHH
Q 013813 410 LRE 412 (436)
Q Consensus 410 ~~~ 412 (436)
+..
T Consensus 312 ~~~ 314 (350)
T 3b0p_A 312 MEE 314 (350)
T ss_dssp HHH
T ss_pred Hhh
Confidence 763
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-53 Score=421.97 Aligned_cols=301 Identities=23% Similarity=0.354 Sum_probs=261.0
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
++|+++|||+++||.+||.+|+++|+++++|||+++..+..........+ .++.+.|+++||+|+++++|++||+++++
T Consensus 4 ~nri~~APM~~~t~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~g~~~~~~~~aa~~a~~ 82 (318)
T 1vhn_A 4 EVKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAARILSE 82 (318)
T ss_dssp -CEEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCEEECCCCCCCcHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999876554333323334 67889999999999999999999998865
Q ss_pred CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccC
Q 013813 182 YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 182 g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgR 261 (436)
.||+||||+|||+.++++++||++|+++++++.++++++++.+++||+||+|.|++.++..++++.++++|+|+|+||+|
T Consensus 83 ~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~ 162 (318)
T 1vhn_A 83 KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTR 162 (318)
T ss_dssp TCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESS
T ss_pred hCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCC
Confidence 59999999999999999999999999999999999999999999999999999998777779999999999999999999
Q ss_pred cccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhhhccCCccc
Q 013813 262 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEI 341 (436)
Q Consensus 262 t~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~~~~~~~~~ 341 (436)
+..+. ++++++|+.++++++ ++|||+||||.|++|+.++++.+|||+|||||+++.|||+|.++.... .+| ..
T Consensus 163 ~~~~~--~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~--~~g-~~ 235 (318)
T 1vhn_A 163 TVVQS--FTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFL--RSG-KY 235 (318)
T ss_dssp CTTTT--TSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHH--HHS-CC
T ss_pred Ccccc--CCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHH--hCC-CC
Confidence 87643 445788999998888 999999999999999999999789999999999999999999987532 223 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHh-CCC--hhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHHHHHh
Q 013813 342 SKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLREL 413 (436)
Q Consensus 342 ~~~~~~~~~~~~~~yl~~~~~-~~~--~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~~~~~ 413 (436)
..++..++++++.+|+++..+ ++. .+..+|+|+.||++. +++...+|+.|++++ +.+++.++++++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~ 307 (318)
T 1vhn_A 236 SEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKD-LKGARRFREKVMKIE--EVQILKEMFYNFIKE 307 (318)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHTTT-CTTHHHHHHHHTTCC--CHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhc-CCChHHHHHHHHcCC--CHHHHHHHHHHHHHh
Confidence 336778899999999997654 453 377899999998764 677789999999997 889999999997643
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=280.13 Aligned_cols=231 Identities=14% Similarity=0.184 Sum_probs=186.9
Q ss_pred CCcEEEccCCCCC---------cHHHHHHHHH--hCCCeEEeCcccch--hhc-------cChhh----hhhhhhccCCC
Q 013813 102 RPKLIVAPMVDNS---------ELPFRMLCRR--YGAEAAYTPMLHSR--IFT-------ESEKY----RNEEFATCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~gvt---------d~~fR~l~~~--~Ga~l~~Temisa~--~l~-------~~~~~----~~~~~~~~~~e 157 (436)
+|++++|||.+++ +..++.+.++ .|+++++||+++.. ... .+... +...-..+..+
T Consensus 17 ~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~~~~~vh~~g 96 (338)
T 1z41_A 17 KNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQVKEQG 96 (338)
T ss_dssp SSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHHHHHHTT
T ss_pred cCccEECCcCCCcCCCCCCCCCHHHHHHHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 6899999999874 3444444443 48999999998653 211 01111 11111245678
Q ss_pred CCEEEEecCC-----------------------CH------------HHHHHHHHHH-cCCCcEEEEecCC---------
Q 013813 158 RPLFVQFCAN-----------------------DP------------EILLNAARRV-EPYCDYVDINLGC--------- 192 (436)
Q Consensus 158 ~plivQL~g~-----------------------d~------------e~~~~AA~~v-~~g~D~IdLN~GC--------- 192 (436)
.++++||++. .| ++|++||+++ ++|||+||||++|
T Consensus 97 ~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFls 176 (338)
T 1z41_A 97 SKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLS 176 (338)
T ss_dssp CEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHC
T ss_pred CEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccchHHHHccC
Confidence 8999999964 33 7899999766 5699999999987
Q ss_pred CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------CCChhhHHHHHHHHHHcCccEEEeccCccccc
Q 013813 193 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 266 (436)
Q Consensus 193 P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~ 266 (436)
|..|.+++.||++++++++++.+|+++|++++++||+||++. |++.+++.++++.++++|+|+|+||+++....
T Consensus 177 p~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~ 256 (338)
T 1z41_A 177 PLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHA 256 (338)
T ss_dssp TTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCC
T ss_pred CCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccC
Confidence 999999999999999999999999999999999999999998 56778899999999999999999999875321
Q ss_pred CCCCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 267 DGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 267 ~~~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
....+ ..+++.++++++.+++||+++|||.|+++++++++.++||+|++||+++.||+|+.++..+
T Consensus 257 ~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~~~ 323 (338)
T 1z41_A 257 DINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQ 323 (338)
T ss_dssp CCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHHcC
Confidence 11112 2478999999999999999999999999999999986699999999999999999998754
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=283.17 Aligned_cols=227 Identities=16% Similarity=0.162 Sum_probs=187.4
Q ss_pred CCcEEEccCCCC-------CcHHHHHHHHHhCCCeEEeCcccch--hhc-------cChhh----hhhhhhccCCCCCEE
Q 013813 102 RPKLIVAPMVDN-------SELPFRMLCRRYGAEAAYTPMLHSR--IFT-------ESEKY----RNEEFATCKEDRPLF 161 (436)
Q Consensus 102 ~~~i~lAPM~gv-------td~~fR~l~~~~Ga~l~~Temisa~--~l~-------~~~~~----~~~~~~~~~~e~pli 161 (436)
+|+|++|||.+. |+..+|.++++.|+++++||+++.. ... .+.+. +...-..+..+.+++
T Consensus 23 ~NRiv~aPm~~~~a~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~ 102 (377)
T 2r14_A 23 PNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIA 102 (377)
T ss_dssp SCSEEECCCCCCCCTTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCeEECCCcCCcCCCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHHHHHhhcCCeEE
Confidence 689999999987 9999999999999999999998753 211 01111 111112467788999
Q ss_pred EEecCC-------------------------------------------CH------------HHHHHHHHHH-cCCCcE
Q 013813 162 VQFCAN-------------------------------------------DP------------EILLNAARRV-EPYCDY 185 (436)
Q Consensus 162 vQL~g~-------------------------------------------d~------------e~~~~AA~~v-~~g~D~ 185 (436)
+||++. .| ++|++||+++ +.|||+
T Consensus 103 ~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDg 182 (377)
T 2r14_A 103 LQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDM 182 (377)
T ss_dssp EEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHHHHHTCSE
T ss_pred EEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 999851 23 7999999876 469999
Q ss_pred EEEecCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccC---------CChhhHHHHHH
Q 013813 186 VDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVF---------PNLQDTIKYAK 246 (436)
Q Consensus 186 IdLN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg---------~~~~d~~~~ak 246 (436)
||||++| |..|.+.+.||++++++++++.+|+++|+++++. ||+||++.. ++.+++.++++
T Consensus 183 VEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~ 262 (377)
T 2r14_A 183 VEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAG 262 (377)
T ss_dssp EEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHH
T ss_pred EEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHH
Confidence 9999997 9999999999999999999999999999999853 999999874 23467889999
Q ss_pred HHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
.++++|+|+|+||+++..+.. .+ .+|++++.+++.+++|||+|||| ++++++++++.++||+||+||+++.||||+
T Consensus 263 ~le~~Gvd~i~v~~~~~~~~~--~~-~~~~~~~~ik~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~~P~l~ 338 (377)
T 2r14_A 263 ELDRRGLAYLHFNEPDWIGGD--IT-YPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLP 338 (377)
T ss_dssp HHHHTTCSEEEEECCC--------C-CCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred HHHHcCCCEEEEeCCcccCCC--Cc-chHHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHhCchHH
Confidence 999999999999998754321 11 26888999999999999999999 699999999997799999999999999999
Q ss_pred hhhhhh
Q 013813 327 AGFRTA 332 (436)
Q Consensus 327 ~~i~~~ 332 (436)
.+++.+
T Consensus 339 ~k~~~g 344 (377)
T 2r14_A 339 ERFRLG 344 (377)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 998754
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-32 Score=275.31 Aligned_cols=226 Identities=15% Similarity=0.180 Sum_probs=187.6
Q ss_pred CCcEEEccCCCC---------CcHHHHHHHHHhCCCeEEeCcccch--hhc-------cChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVDN---------SELPFRMLCRRYGAEAAYTPMLHSR--IFT-------ESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~gv---------td~~fR~l~~~~Ga~l~~Temisa~--~l~-------~~~~~----~~~~~~~~~~e~p 159 (436)
+|++++|||.++ |+..+|.++++.|+++++||+++.. ... .+.+. +...-..+..+.+
T Consensus 17 ~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh~~g~~ 96 (364)
T 1vyr_A 17 PNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGR 96 (364)
T ss_dssp SSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 689999999976 7899999999999999999998753 211 11211 1111124667889
Q ss_pred EEEEecC------------------------------------------CCH------------HHHHHHHHHH-cCCCc
Q 013813 160 LFVQFCA------------------------------------------NDP------------EILLNAARRV-EPYCD 184 (436)
Q Consensus 160 livQL~g------------------------------------------~d~------------e~~~~AA~~v-~~g~D 184 (436)
+++||+. ..| ++|++||+++ +.|||
T Consensus 97 i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfD 176 (364)
T 1vyr_A 97 IAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFD 176 (364)
T ss_dssp EEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999983 233 7999999766 56999
Q ss_pred EEEEecCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCC----------ChhhHHHH
Q 013813 185 YVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP----------NLQDTIKY 244 (436)
Q Consensus 185 ~IdLN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~----------~~~d~~~~ 244 (436)
+||||++| |..|.+.+.||++++++++++.+|+++|++.++ .||+||++.+. +.+++.++
T Consensus 177 gVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~ 256 (364)
T 1vyr_A 177 LVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYL 256 (364)
T ss_dssp EEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHH
T ss_pred EEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHH
Confidence 99999986 989999999999999999999999999999984 39999999862 23467889
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.++++|+|+|++|+++..+. . ...|++++.+++.+++||+++||| ++++++++++.++||+||+||+++.|||
T Consensus 257 a~~l~~~G~d~i~v~~~~~~~~--~--~~~~~~~~~v~~~~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~~P~ 331 (364)
T 1vyr_A 257 IEELAKRGIAYLHMSETDLAGG--K--PYSEAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANPD 331 (364)
T ss_dssp HHHHHHTTCSEEEEECCBTTBC--C--CCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHHhCCCEEEEecCcccCC--C--cccHHHHHHHHHHCCCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHhChh
Confidence 9999999999999999865432 1 246888999999999999999999 8999999999977999999999999999
Q ss_pred cchhhhhh
Q 013813 325 LFAGFRTA 332 (436)
Q Consensus 325 lf~~i~~~ 332 (436)
|+.+++.+
T Consensus 332 ~~~~~~~g 339 (364)
T 1vyr_A 332 LVARLQKK 339 (364)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 99998754
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.6e-32 Score=274.41 Aligned_cols=226 Identities=15% Similarity=0.180 Sum_probs=186.9
Q ss_pred CCcEEEccCCCCC---------cHHHHHHHHHhCCCeEEeCcccch--hhc-------cChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVDNS---------ELPFRMLCRRYGAEAAYTPMLHSR--IFT-------ESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~gvt---------d~~fR~l~~~~Ga~l~~Temisa~--~l~-------~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.+++ +..+|.++++.|+++++||+++.. ... .+.+. +...-..+..+.+
T Consensus 17 ~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh~~g~~ 96 (365)
T 2gou_A 17 KNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVTEAVHAKGCA 96 (365)
T ss_dssp SSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHHHHHHHSCE
T ss_pred cCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCe
Confidence 6899999999874 789999999999999999998643 211 11111 1111124567889
Q ss_pred EEEEecC------------------------------------------CCH------------HHHHHHHHHH-cCCCc
Q 013813 160 LFVQFCA------------------------------------------NDP------------EILLNAARRV-EPYCD 184 (436)
Q Consensus 160 livQL~g------------------------------------------~d~------------e~~~~AA~~v-~~g~D 184 (436)
+++||+. ..| ++|++||+++ +.|||
T Consensus 97 i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfD 176 (365)
T 2gou_A 97 IFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAALNAMEAGFD 176 (365)
T ss_dssp EEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999984 123 7999999766 56999
Q ss_pred EEEEecCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccC-C--------ChhhHHHHH
Q 013813 185 YVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVF-P--------NLQDTIKYA 245 (436)
Q Consensus 185 ~IdLN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg-~--------~~~d~~~~a 245 (436)
+||||++| |..|.+.+.||++|+++++++.+|+++|++.++. ||+||++.. + +.++..+++
T Consensus 177 gVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a 256 (365)
T 2gou_A 177 GIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAA 256 (365)
T ss_dssp EEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHH
T ss_pred EEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHH
Confidence 99999987 9999999999999999999999999999999853 999999983 2 345778999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+.++++|+|+|++|+++..... ...|++++.+++.+++|||++||| ++++++++++.++||+||+||+++.||+|
T Consensus 257 ~~l~~~G~d~i~v~~~~~~~~~----~~~~~~~~~i~~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~~P~l 331 (365)
T 2gou_A 257 ALLNKHRIVYLHIAEVDWDDAP----DTPVSFKRALREAYQGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIANPDL 331 (365)
T ss_dssp HHHHHTTCSEEEEECCBTTBCC----CCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHHCTTH
T ss_pred HHHHHcCCCEEEEeCCCcCCCC----CccHHHHHHHHHHCCCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHhCchH
Confidence 9999999999999998653211 235788999999999999999999 99999999998679999999999999999
Q ss_pred chhhhhh
Q 013813 326 FAGFRTA 332 (436)
Q Consensus 326 f~~i~~~ 332 (436)
+.+++.+
T Consensus 332 ~~~~~~g 338 (365)
T 2gou_A 332 PERLRHG 338 (365)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9998754
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=269.69 Aligned_cols=226 Identities=16% Similarity=0.140 Sum_probs=179.9
Q ss_pred CCcEEEccCCCCC-------cHH---HHHHHHHhCCCeEEeCcccchh--hc-------cChhh----hhhhhhccCCCC
Q 013813 102 RPKLIVAPMVDNS-------ELP---FRMLCRRYGAEAAYTPMLHSRI--FT-------ESEKY----RNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~gvt-------d~~---fR~l~~~~Ga~l~~Temisa~~--l~-------~~~~~----~~~~~~~~~~e~ 158 (436)
+|+|++|||.+++ +.. ||+.++ |+++++||+++... .. .+.+. +...-..+..+.
T Consensus 28 ~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~--g~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~ 105 (376)
T 1icp_A 28 CHRVVLAPLTRQRSYGYIPQPHAILHYSQRST--NGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGG 105 (376)
T ss_dssp SCSEEECCCCCCCCGGGSCCHHHHHHHHHTCC--TTCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHHHHHHHTTC
T ss_pred CCccEECCcCcCcCCCCCCCHHHHHHHHHhcC--CeeEEEECceeeccccccCcccCccCCHHHHHHHHHHHHHHHhcCC
Confidence 6899999999874 444 444444 79999999987542 11 11211 111113467788
Q ss_pred CEEEEecC--------------------------------------CCH------------HHHHHHHHHH-cCCCcEEE
Q 013813 159 PLFVQFCA--------------------------------------NDP------------EILLNAARRV-EPYCDYVD 187 (436)
Q Consensus 159 plivQL~g--------------------------------------~d~------------e~~~~AA~~v-~~g~D~Id 187 (436)
++++||++ ..| ++|++||+++ ++|||+||
T Consensus 106 ~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~AA~~a~~aGfDgVE 185 (376)
T 1icp_A 106 IFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVE 185 (376)
T ss_dssp EEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred eEEEEeecCCCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999987 123 7999999776 56999999
Q ss_pred EecCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccCC---------ChhhHHHHHHHH
Q 013813 188 INLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVFP---------NLQDTIKYAKML 248 (436)
Q Consensus 188 LN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg~---------~~~d~~~~ak~l 248 (436)
||++| |..|.+.+.||++++++++++.+|+++|+++++. ||+||++... +.+++.++++.+
T Consensus 186 ih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~l 265 (376)
T 1icp_A 186 IHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESL 265 (376)
T ss_dssp EEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHH
T ss_pred EcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHH
Confidence 99987 9999999999999999999999999999999853 9999998642 234578999999
Q ss_pred HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 249 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
+++|+++|++|+++..+. .++..+|+.++.+++.+++||+++||| ++++++++|+.++||+||+||+++.||||+.+
T Consensus 266 e~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~vr~~~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k 342 (376)
T 1icp_A 266 NKYDLAYCHVVEPRMKTA--WEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLPKR 342 (376)
T ss_dssp GGGCCSEEEEECCSCCC--------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred HHcCCCEEEEcCCcccCC--CCccccHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHhCccHHHH
Confidence 999999999999875432 112245677899999999999999999 89999999999779999999999999999999
Q ss_pred hhhh
Q 013813 329 FRTA 332 (436)
Q Consensus 329 i~~~ 332 (436)
++.+
T Consensus 343 ~~~g 346 (376)
T 1icp_A 343 FELN 346 (376)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 8754
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=272.91 Aligned_cols=228 Identities=13% Similarity=0.119 Sum_probs=181.6
Q ss_pred CCcEEEccCCCCC---c----HH---HHHHHHHhCCCeEEeCcccch--hhc-------cChhh----hhhhhhccCCCC
Q 013813 102 RPKLIVAPMVDNS---E----LP---FRMLCRRYGAEAAYTPMLHSR--IFT-------ESEKY----RNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~gvt---d----~~---fR~l~~~~Ga~l~~Temisa~--~l~-------~~~~~----~~~~~~~~~~e~ 158 (436)
+|+|++|||.+++ + .. ||+.++ |+++++||++... ... .+.+. +...-..+..+.
T Consensus 30 ~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~--G~GLIitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~ 107 (402)
T 2hsa_B 30 SHRVVLAPMTRCRALNNIPQAALGEYYEQRAT--AGGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGA 107 (402)
T ss_dssp SCSEEECCCCCCCSGGGCCCHHHHHHHHHHCC--TTCEEECCCEESSTTCCCSTTCCBCSSHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEECCCCCCcCCCCCCCHHHHHHHHHHhc--cCCEEEecceeeccccccCCCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 6899999999875 3 33 444443 6899999998753 111 11121 111113467788
Q ss_pred CEEEEecC----------------------------------------CCH------------HHHHHHHHHH-cCCCcE
Q 013813 159 PLFVQFCA----------------------------------------NDP------------EILLNAARRV-EPYCDY 185 (436)
Q Consensus 159 plivQL~g----------------------------------------~d~------------e~~~~AA~~v-~~g~D~ 185 (436)
++++||+. ..| ++|++||+++ ++|||+
T Consensus 108 ~i~~QL~H~Gr~~~~~~~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~AGfDg 187 (402)
T 2hsa_B 108 VIFCQLWHVGRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDG 187 (402)
T ss_dssp EEEEEEECCTTSCCGGGCTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGGHHHHHHHHHHHHHHHHHTTCSE
T ss_pred eEEEEeccCCcccccccccCCCccccCCCcccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999983 124 7999999876 569999
Q ss_pred EEEecCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCC---------ChhhHHHHHH
Q 013813 186 VDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP---------NLQDTIKYAK 246 (436)
Q Consensus 186 IdLN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~---------~~~d~~~~ak 246 (436)
||||++| |..|.+++.||++++++++++.+||++|+++++ .||+||++.+. +.+++.++++
T Consensus 188 VEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~ 267 (402)
T 2hsa_B 188 IEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVE 267 (402)
T ss_dssp EEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHH
T ss_pred EEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHH
Confidence 9999986 999999999999999999999999999999985 59999999752 2356789999
Q ss_pred HHHHcC------ccEEEeccCcccccCCCC------CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 247 MLEDAG------CSLLAVHGRTRDEKDGKK------FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 247 ~le~aG------~d~I~VHgRt~~~~~~~~------g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.++++| +|+|+||+++..+....+ +..+|++++.+++.+++|||+|||| ++++++++|+.++||+||
T Consensus 268 ~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~ 346 (402)
T 2hsa_B 268 RLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY-TRELGIEAVAQGDADLVS 346 (402)
T ss_dssp HHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred HHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHCCCCceee
Confidence 999999 999999998765411111 1136888999999999999999999 999999999997799999
Q ss_pred eehHHhhCCccchhhhhh
Q 013813 315 SAESLLENPALFAGFRTA 332 (436)
Q Consensus 315 IGRgal~nP~lf~~i~~~ 332 (436)
+||+++.||||+.+++.+
T Consensus 347 igR~~l~dP~l~~k~~~g 364 (402)
T 2hsa_B 347 YGRLFISNPDLVMRIKLN 364 (402)
T ss_dssp ESHHHHHCTTHHHHHHHT
T ss_pred ecHHHHhCchHHHHHHhC
Confidence 999999999999998764
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=258.00 Aligned_cols=231 Identities=15% Similarity=0.142 Sum_probs=183.8
Q ss_pred CCcEEEccCCC---------CCcHHHHHHHHHh--CCCeEEeCcccch--h--hc-----cChhh----hhhhhhccCCC
Q 013813 102 RPKLIVAPMVD---------NSELPFRMLCRRY--GAEAAYTPMLHSR--I--FT-----ESEKY----RNEEFATCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~g---------vtd~~fR~l~~~~--Ga~l~~Temisa~--~--l~-----~~~~~----~~~~~~~~~~e 157 (436)
+|+|++|||.. .|+.....+.++. |+++++||..... . .. .+... ++..-..+..+
T Consensus 17 ~NRiv~apm~~~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~vh~~G 96 (340)
T 3gr7_A 17 KNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHG 96 (340)
T ss_dssp SSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECSSTTHHHHHHHHHHHHHHTT
T ss_pred cCceEECCcCCCcccCCCCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 78999999975 3455666666544 7899999976432 1 00 11111 11111345678
Q ss_pred CCEEEEecCCC-----------------------------------HHHHHHHHHHHc-CCCcEEEEecC---------C
Q 013813 158 RPLFVQFCAND-----------------------------------PEILLNAARRVE-PYCDYVDINLG---------C 192 (436)
Q Consensus 158 ~plivQL~g~d-----------------------------------~e~~~~AA~~v~-~g~D~IdLN~G---------C 192 (436)
..+++||+... .++|++||+++. .|||+||||++ |
T Consensus 97 ~~i~~QL~H~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFls 176 (340)
T 3gr7_A 97 AAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLS 176 (340)
T ss_dssp CEEEEEEECCGGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHC
T ss_pred CeEEEEeccCCCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCC
Confidence 88999996311 579999998765 59999999998 5
Q ss_pred CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC------CChhhHHHHHHHHHHcCccEEEecc-Ccccc
Q 013813 193 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHG-RTRDE 265 (436)
Q Consensus 193 P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg------~~~~d~~~~ak~le~aG~d~I~VHg-Rt~~~ 265 (436)
|..|.+.+.||++++++++++.+|+++|+++++.||+||++.. ++.++..++++.++++|+|+|+||. ++..+
T Consensus 177 p~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~ 256 (340)
T 3gr7_A 177 PLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPA 256 (340)
T ss_dssp TTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCC
T ss_pred CccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCC
Confidence 9999999999999999999999999999999999999999973 5678999999999999999999994 43332
Q ss_pred cCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 266 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 266 ~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
........++++++++++.+++||+++|||.|+++++++|+.++||+|++||+++.||+|+.++...
T Consensus 257 ~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~~~ 323 (340)
T 3gr7_A 257 RMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAARE 323 (340)
T ss_dssp CCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHH
T ss_pred CCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHHHH
Confidence 1111123578999999999999999999999999999999986699999999999999999998753
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=255.30 Aligned_cols=224 Identities=15% Similarity=0.169 Sum_probs=181.0
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChh----------------------hhhhhhhcc--CC-
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEK----------------------YRNEEFATC--KE- 156 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~----------------------~~~~~~~~~--~~- 156 (436)
++|+++|+..--.|..|+..+.+.|+++++|+|++.+....+.+ .....+... ..
T Consensus 12 ~npv~~Aag~~~~~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~~~ 91 (311)
T 1jub_A 12 ANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENA 91 (311)
T ss_dssp SSSEEECTTSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHHHTC
T ss_pred CCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHHHHHHhcC
Confidence 78999997442238999999999999999999998764322211 000111111 22
Q ss_pred -CCCEEEEecCCCHHHHHHHHHHHc-CCCc-EEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 157 -DRPLFVQFCANDPEILLNAARRVE-PYCD-YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 157 -e~plivQL~g~d~e~~~~AA~~v~-~g~D-~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
+.|+++||+|++++++.++++.++ .|+| +||||++||+. .+ |..+..+++.+.++++++++.+++||+||++
T Consensus 92 ~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~---~g--~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~ 166 (311)
T 1jub_A 92 QEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV---PG--EPQLAYDFEATEKLLKEVFTFFTKPLGVKLP 166 (311)
T ss_dssp SSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS---SS--CCCGGGCHHHHHHHHHHHTTTCCSCEEEEEC
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC---CC--cccccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 789999999999999999998875 4899 99999999996 22 5667779999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcc-----c------------ccCCCCCc----cCHHHHHHHHhhC--CCcEE
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-----D------------EKDGKKFR----ADWNAIKAVKNAL--RIPVL 290 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~-----~------------~~~~~~g~----ad~~~i~~ik~~~--~iPVi 290 (436)
.+.+.++..++++.++++|+|+|++|+++. + ...+.+|+ ..|+.++++++.+ ++|||
T Consensus 167 ~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi 246 (311)
T 1jub_A 167 PYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQII 246 (311)
T ss_dssp CCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEE
Confidence 988877888999999999999999999861 1 00112232 3488999999998 89999
Q ss_pred EccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhhh
Q 013813 291 ANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 331 (436)
Q Consensus 291 anGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~~ 331 (436)
++|||.|++|+.+++.. |||+||+||+++. +||+|.++..
T Consensus 247 ~~GGI~~~~da~~~l~~-GAd~V~vg~~~l~~~p~~~~~i~~ 287 (311)
T 1jub_A 247 GTGGIETGQDAFEHLLC-GATMLQIGTALHKEGPAIFDRIIK 287 (311)
T ss_dssp EESSCCSHHHHHHHHHH-TCSEEEECHHHHHHCTHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHc-CCCEEEEchHHHhcCcHHHHHHHH
Confidence 99999999999999975 9999999999996 9999987753
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=249.27 Aligned_cols=224 Identities=17% Similarity=0.182 Sum_probs=180.6
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhcc--------------------Chhhh--hhhhhc--cCCC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTE--------------------SEKYR--NEEFAT--CKED 157 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~--------------------~~~~~--~~~~~~--~~~e 157 (436)
++|+++|++.--.+..++..+.++|++++.|++++.+.... +.... ...+.. ...+
T Consensus 14 ~nPi~~Aag~~~~~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~~~ 93 (314)
T 2e6f_A 14 ANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHDYSK 93 (314)
T ss_dssp SSSEEECTTSSCSSHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCCTTT
T ss_pred CCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHHhhcCC
Confidence 68999998772246788888899999999999998764211 11000 011221 2257
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcC-CCc---EEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 158 RPLFVQFCANDPEILLNAARRVEP-YCD---YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~-g~D---~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
.|+++||+|.+++++.++++.+++ |+| +||||++||+. .+ |..+..+++.+.++++++++.+++||+||++
T Consensus 94 ~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~---~g--~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~ 168 (314)
T 2e6f_A 94 KPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV---PG--KPQVAYDFEAMRTYLQQVSLAYGLPFGVKMP 168 (314)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS---TT--CCCGGGSHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC---CC--chhhcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 899999999999999999988865 789 99999999996 12 5667778999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHcC-ccEEEeccCcc-----c---c---------cCCCCC----ccCHHHHHHHHhhC-CCcEE
Q 013813 234 VFPNLQDTIKYAKMLEDAG-CSLLAVHGRTR-----D---E---------KDGKKF----RADWNAIKAVKNAL-RIPVL 290 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG-~d~I~VHgRt~-----~---~---------~~~~~g----~ad~~~i~~ik~~~-~iPVi 290 (436)
.+.+.++..++++.++++| +|+|++|+++. + . ..+.+| +..|++++++++.+ ++|||
T Consensus 169 ~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi 248 (314)
T 2e6f_A 169 PYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVF 248 (314)
T ss_dssp CCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEE
Confidence 9888788889999999999 99999999872 1 0 011222 23489999999998 99999
Q ss_pred EccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhhh
Q 013813 291 ANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 331 (436)
Q Consensus 291 anGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~~ 331 (436)
++|||.|++|+.+++.. |||+||+||+++. +||+|.++..
T Consensus 249 ~~GGI~~~~da~~~l~~-GAd~V~ig~~~l~~~p~~~~~i~~ 289 (314)
T 2e6f_A 249 GCGGVYSGEDAFLHILA-GASMVQVGTALQEEGPGIFTRLED 289 (314)
T ss_dssp EESSCCSHHHHHHHHHH-TCSSEEECHHHHHHCTTHHHHHHH
T ss_pred EECCCCCHHHHHHHHHc-CCCEEEEchhhHhcCcHHHHHHHH
Confidence 99999999999999975 9999999999996 9999987753
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=253.21 Aligned_cols=228 Identities=16% Similarity=0.183 Sum_probs=182.4
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh--CCCeEEeCcccch--h--hc-----cChhh----hhhhhhccCCCC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY--GAEAAYTPMLHSR--I--FT-----ESEKY----RNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~--Ga~l~~Temisa~--~--l~-----~~~~~----~~~~~~~~~~e~ 158 (436)
+|+|++|||.. .|+.....+.++. |+++++||.+... . .. .+... +...-..+..+.
T Consensus 16 ~NRiv~apm~~~~~~~~g~~t~~~~~yy~~rA~gG~Gliite~~~V~~~g~~~~~~~gi~~d~~i~~~~~~~~~vh~~G~ 95 (343)
T 3kru_A 16 KNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRITDHDLGIWNDEQVKELKKIVDICKANGA 95 (343)
T ss_dssp SSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSHHHHHHHHHHHHHHHHTTC
T ss_pred eeeecccchhheecccCCCCCceeeeeeehhhccceeeeeehhhhhhhcCccccccccccCHHHHHHHHHHHHHHhcCCc
Confidence 78999999976 4556666666544 7899999976432 1 10 11111 111112456788
Q ss_pred CEEEEecCCC------------------------------------HHHHHHHHHHHc-CCCcEEEEe---------cCC
Q 013813 159 PLFVQFCAND------------------------------------PEILLNAARRVE-PYCDYVDIN---------LGC 192 (436)
Q Consensus 159 plivQL~g~d------------------------------------~e~~~~AA~~v~-~g~D~IdLN---------~GC 192 (436)
.+++||+... .++|++||+++. +|||+|||| |+|
T Consensus 96 ~i~~QL~H~Gr~~~~~g~~~~apS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFls 175 (343)
T 3kru_A 96 VMGIQLAHAGRKCNISYEDVVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLS 175 (343)
T ss_dssp EEEEEEECCGGGCCCTTSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHC
T ss_pred eEeeehhhccCccCcchhhccCCCcCCCCccccCchhcCHHHHHHHHHHHHHHHhhccccCCceEEEecccchhHHHhhc
Confidence 8999996310 578999998764 599999999 789
Q ss_pred CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc------CCChhhHHHHHHHHHHcCccEEEe-ccCcc
Q 013813 193 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAV-HGRTR 263 (436)
Q Consensus 193 P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~I~V-HgRt~ 263 (436)
|..|.+++.||++++++++++.+|+++|++++ ++||+||++. |++.+++.++++.|+++ +|+|+| ||++.
T Consensus 176 p~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~ 254 (343)
T 3kru_A 176 PLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLL 254 (343)
T ss_dssp TTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSS
T ss_pred ccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceE
Confidence 99999999999999999999999999999999 6899999997 34578899999999999 999999 67765
Q ss_pred cccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 264 DEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 264 ~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.+........+|++++.+++.+++||+++|||.++++++++++.++||+||+||+++.||+|+.+++
T Consensus 255 ~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~ 321 (343)
T 3kru_A 255 NVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLHTY 321 (343)
T ss_dssp CCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred eeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence 4321111235799999999999999999999999999999999877999999999999999999886
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=251.45 Aligned_cols=221 Identities=17% Similarity=0.162 Sum_probs=176.0
Q ss_pred CCcEEEccCCCCCcHH-HHHHHHHhCCCeEEeCcccchhhccC----------------------h--hhhhhhhhccCC
Q 013813 102 RPKLIVAPMVDNSELP-FRMLCRRYGAEAAYTPMLHSRIFTES----------------------E--KYRNEEFATCKE 156 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~-fR~l~~~~Ga~l~~Temisa~~l~~~----------------------~--~~~~~~~~~~~~ 156 (436)
++|+++|++ +++.. |+..+.+.|++++.|++++.+....+ . ......+.....
T Consensus 55 ~npi~~aag--~~~~~~~~~~~a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~~~~~~~~~~~ 132 (336)
T 1f76_A 55 KNPLGLAAG--LDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHY 132 (336)
T ss_dssp SSSEEECTT--SSTTCCCHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHHHHHHCCC
T ss_pred CCCcEeCcc--cCCcHHHHHHHHHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHHHHHHHHhccc
Confidence 689999965 44433 88888899999999999875421111 0 000111222223
Q ss_pred CCCEEEEecCCC-------HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-----
Q 013813 157 DRPLFVQFCAND-------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL----- 224 (436)
Q Consensus 157 e~plivQL~g~d-------~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~----- 224 (436)
+.|+++||++++ +++|.++++.+.+|+|+||||++||+.+ |...+++++++.+++++|++.+
T Consensus 133 ~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~------g~~~~~~~~~~~~il~~vr~~~~~~~~ 206 (336)
T 1f76_A 133 DGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIKNKQNDLQA 206 (336)
T ss_dssp CSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 579999999998 9999999998877999999999999864 3445678999999999999988
Q ss_pred ----CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc-----------cCCCCCc----cCHHHHHHHHhhC
Q 013813 225 ----NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFR----ADWNAIKAVKNAL 285 (436)
Q Consensus 225 ----~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-----------~~~~~g~----ad~~~i~~ik~~~ 285 (436)
++||+||++.+++.++..++++.++++|+|+|+||+++... ..+.+|+ ..++.++++++.+
T Consensus 207 ~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~ 286 (336)
T 1f76_A 207 MHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLEL 286 (336)
T ss_dssp HHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHH
T ss_pred cccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHh
Confidence 89999999988888889999999999999999999876421 1112333 2458889999988
Q ss_pred --CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhhh
Q 013813 286 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 331 (436)
Q Consensus 286 --~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~~ 331 (436)
++|||++|||.|++|+.++++. |||+||+||+++. |||+|.++..
T Consensus 287 ~~~ipVi~~GGI~~~~da~~~l~~-GAd~V~igr~~l~~~P~~~~~i~~ 334 (336)
T 1f76_A 287 NGRLPIIGVGGIDSVIAAREKIAA-GASLVQIYSGFIFKGPPLIKEIVT 334 (336)
T ss_dssp TTSSCEEEESSCCSHHHHHHHHHH-TCSEEEESHHHHHHCHHHHHHHHH
T ss_pred CCCCCEEEECCCCCHHHHHHHHHC-CCCEEEeeHHHHhcCcHHHHHHHh
Confidence 8999999999999999999996 8999999999998 9999998763
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=252.18 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=146.7
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc----CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEE
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVE----PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 231 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~----~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVK 231 (436)
.+.|+++||+|++++++.++|+.++ .|+|+||||+|||+.. + |..|+++++.+.++++++++.+++||+||
T Consensus 125 ~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~---g--g~~l~~~~e~~~~il~av~~~~~~PV~vK 199 (354)
T 4ef8_A 125 GKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP---G--KPQVAYDFDAMRQCLTAVSEVYPHSFGVK 199 (354)
T ss_dssp TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST---T--SCCGGGSHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC---C--chhhccCHHHHHHHHHHHHHhhCCCeEEE
Confidence 4689999999999999999999887 3799999999999963 2 67899999999999999999999999999
Q ss_pred eccCCChhhHHHHHHHHHHcC-ccEEEecc------------Ccc-----cccCCCCCc----cCHHHHHHHHhhC-CCc
Q 013813 232 IRVFPNLQDTIKYAKMLEDAG-CSLLAVHG------------RTR-----DEKDGKKFR----ADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 232 iRlg~~~~d~~~~ak~le~aG-~d~I~VHg------------Rt~-----~~~~~~~g~----ad~~~i~~ik~~~-~iP 288 (436)
+|.+++..+..++++.++++| +|+|+++. |+. ....+++|+ .+|+.++++++.. ++|
T Consensus 200 i~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ip 279 (354)
T 4ef8_A 200 MPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKL 279 (354)
T ss_dssp ECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSE
T ss_pred ecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCC
Confidence 999988888888899999998 99998754 321 112233443 5799999999986 799
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 330 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~ 330 (436)
||++|||.|.+|+.+++.. |||+|||||+++.| ||+|.++.
T Consensus 280 II~~GGI~s~~da~~~l~a-GAd~V~vgra~l~~GP~~~~~i~ 321 (354)
T 4ef8_A 280 IFGCGGVYTGEDAFLHVLA-GASMVQVGTALQEEGPSIFERLT 321 (354)
T ss_dssp EEEESCCCSHHHHHHHHHH-TEEEEEECHHHHHHCTTHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHc-CCCEEEEhHHHHHhCHHHHHHHH
Confidence 9999999999999999985 99999999999999 99998775
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-29 Score=269.35 Aligned_cols=231 Identities=13% Similarity=0.141 Sum_probs=184.8
Q ss_pred CCcEEEccCCC-CCc--HHHHHHHHH------hCCCeEEeCcccch--hhc--c-----Chhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD-NSE--LPFRMLCRR------YGAEAAYTPMLHSR--IFT--E-----SEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g-vtd--~~fR~l~~~------~Ga~l~~Temisa~--~l~--~-----~~~~----~~~~~~~~~~e~p 159 (436)
+|++++|||.+ .++ .+++.+++. .|+++++||+++.. ... . +... +...-..+..+.+
T Consensus 17 ~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~ 96 (671)
T 1ps9_A 17 KNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGK 96 (671)
T ss_dssp SSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHHHHTTCC
T ss_pred cCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCE
Confidence 68999999997 444 234444433 48999999998753 211 0 1111 1111124567889
Q ss_pred EEEEecCC----------------------CH------------HHHHHHHHHH-cCCCcEEEEecCC---------Cch
Q 013813 160 LFVQFCAN----------------------DP------------EILLNAARRV-EPYCDYVDINLGC---------PQR 195 (436)
Q Consensus 160 livQL~g~----------------------d~------------e~~~~AA~~v-~~g~D~IdLN~GC---------P~~ 195 (436)
+++||++. .| ++|++||+++ ++|||+||||++| |..
T Consensus 97 i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~ 176 (671)
T 1ps9_A 97 IALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRT 176 (671)
T ss_dssp EEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTT
T ss_pred EEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCcc
Confidence 99999974 33 7899999766 5699999999986 999
Q ss_pred hhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc------CCChhhHHHHHHHHHHcCccEEEeccCcccccC
Q 013813 196 IARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 267 (436)
Q Consensus 196 ~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~ 267 (436)
|.+++.||++++++++++.+|+++|++.+ ++||+||++. |++.+++.++++.++++|+|+|++|+++.++..
T Consensus 177 n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~ 256 (671)
T 1ps9_A 177 NQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARI 256 (671)
T ss_dssp CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSS
T ss_pred CCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCcccccc
Confidence 99999999999999999999999999998 7899999986 567788999999999999999999987654321
Q ss_pred ----CCCCc-cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 268 ----GKKFR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 268 ----~~~g~-ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
...+. ..++.++++++.+++||+++|||.++++++++++.++||+|++||+++.||+|+.+++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~~g 326 (671)
T 1ps9_A 257 PTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSG 326 (671)
T ss_dssp CSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHTT
T ss_pred ccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHHHcC
Confidence 11112 346889999999999999999999999999999986799999999999999999988764
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=247.30 Aligned_cols=231 Identities=16% Similarity=0.175 Sum_probs=182.6
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh--CCCeEEeCcccchh----hc-----cChhh----hhhhhhccCCCC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY--GAEAAYTPMLHSRI----FT-----ESEKY----RNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~--Ga~l~~Temisa~~----l~-----~~~~~----~~~~~~~~~~e~ 158 (436)
+|+|++|||.. .|+.....+.++. |+++++||.+.... .. .+... ++..-..+..+.
T Consensus 16 ~NRiv~apm~~~~~~~~g~~~~~~~~~y~~rA~gg~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~vh~~G~ 95 (349)
T 3hgj_A 16 KNRLAMSPMCQYSATLEGEVTDWHLLHYPTRALGGVGLILVEATAVEPLGRISPYDLGIWSEDHLPGLKELARRIREAGA 95 (349)
T ss_dssp SSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSGGGHHHHHHHHHHHHHTTC
T ss_pred cCceEECCcCcCCcCCCCCCCHHHHHHHHHHhcCCceEEEecceeecccccCCCCcCccCcHHHHHHHHHHHHHHHhCCC
Confidence 78999999985 3556666666544 78999999764321 10 11111 111112455677
Q ss_pred CEEEEecCC---------------------------------C------------HHHHHHHHHHH-cCCCcEEEEecCC
Q 013813 159 PLFVQFCAN---------------------------------D------------PEILLNAARRV-EPYCDYVDINLGC 192 (436)
Q Consensus 159 plivQL~g~---------------------------------d------------~e~~~~AA~~v-~~g~D~IdLN~GC 192 (436)
.+++||+.. . .++|++||+++ ++|||+||||++|
T Consensus 96 ~i~~Ql~H~Gr~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~ 175 (349)
T 3hgj_A 96 VPGIQLAHAGRKAGTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVEGARRALRAGFQVIELHMAH 175 (349)
T ss_dssp EEEEEEECCGGGCCBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred eEEEEeccCCccccccccccccccCCCcccCCCcccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 888888521 0 47899999766 5699999999999
Q ss_pred ---------CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc------CCChhhHHHHHHHHHHcCccE
Q 013813 193 ---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 193 ---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~ 255 (436)
|..|.+++.||++++++++++.+|+++|++.+ ++||.||++. |++.+++.++++.++++|+|+
T Consensus 176 GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~ 255 (349)
T 3hgj_A 176 GYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDL 255 (349)
T ss_dssp TSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCE
T ss_pred chHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999 6899999997 567889999999999999999
Q ss_pred EEec-cCcccccCC-CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 256 LAVH-GRTRDEKDG-KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 256 I~VH-gRt~~~~~~-~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
|+|| |++...... .....+++.++++++.+++||+++|||.|+++++++++.+.||+|++||+++.||+|+.++...
T Consensus 256 i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~~~ 334 (349)
T 3hgj_A 256 LDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRAAKA 334 (349)
T ss_dssp EEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHHH
T ss_pred EEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHHHHH
Confidence 9999 444322111 1113578999999999999999999999999999999986699999999999999999988753
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=249.02 Aligned_cols=167 Identities=21% Similarity=0.269 Sum_probs=145.7
Q ss_pred CCCEEEEecCC-----CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-------c
Q 013813 157 DRPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-------L 224 (436)
Q Consensus 157 e~plivQL~g~-----d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-------~ 224 (436)
+.|+++||+|+ ++++++++++.+.+++|+||||+|||+.. |..++++++.+.++++++++. +
T Consensus 146 ~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~------G~~~l~~~~~l~~ll~av~~~~~~~~~~~ 219 (367)
T 3zwt_A 146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTA------GLRSLQGKAELRRLLTKVLQERDGLRRVH 219 (367)
T ss_dssp TCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHTSCGGG
T ss_pred CceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCC------CccccCCHHHHHHHHHHHHHHHhhccccC
Confidence 57999999997 79999999999988899999999999973 345789999999999998754 6
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc-----------cCCCCCcc----CHHHHHHHHhhC--CC
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFRA----DWNAIKAVKNAL--RI 287 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-----------~~~~~g~a----d~~~i~~ik~~~--~i 287 (436)
++||+||+|.+.+.+++.++|+.++++|+|+|++|+++... ..+.+|++ .|+.++++++.+ ++
T Consensus 220 ~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~i 299 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRV 299 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCS
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCc
Confidence 89999999999888899999999999999999999987431 12334443 468899999998 89
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHH-hhCCccchhhh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFR 330 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRga-l~nP~lf~~i~ 330 (436)
|||++|||.|.+|+.++++. |||+||+||++ +.+||+|.++.
T Consensus 300 pvI~~GGI~s~~da~~~l~~-GAd~V~vgra~l~~gP~~~~~i~ 342 (367)
T 3zwt_A 300 PIIGVGGVSSGQDALEKIRA-GASLVQLYTALTFWGPPVVGKVK 342 (367)
T ss_dssp CEEEESSCCSHHHHHHHHHH-TCSEEEESHHHHHHCTHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHc-CCCEEEECHHHHhcCcHHHHHHH
Confidence 99999999999999999985 99999999999 56899998775
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=245.59 Aligned_cols=167 Identities=17% Similarity=0.235 Sum_probs=139.0
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHcC-CC-cEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 155 KEDRPLFVQFCANDPEILLNAARRVEP-YC-DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~~v~~-g~-D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
..+.|+++||+|++++++.++|+.+++ ++ |+||||+|||+.. + |..|+++++.+.+|++++++.+++||+||+
T Consensus 126 ~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~---G--~~~l~~~~e~l~~il~av~~~~~~PV~vKi 200 (345)
T 3oix_A 126 PDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP---G--XPQIAYDFETTDQILSEVFTYFTKPLGIKL 200 (345)
T ss_dssp TTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST---T--CCCGGGCHHHHHHHHHHHTTTCCSCEEEEE
T ss_pred cCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC---C--chhhcCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 457899999999999999999998864 65 5999999999964 3 588899999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEE-------------eccCccc-----ccCCCCCccC----HHHHHHHHhhC--CCc
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLA-------------VHGRTRD-----EKDGKKFRAD----WNAIKAVKNAL--RIP 288 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~-------------VHgRt~~-----~~~~~~g~ad----~~~i~~ik~~~--~iP 288 (436)
|.+. +..++++.++++|++.|+ +|.|+.. ...+++|++. |+.++++++.+ ++|
T Consensus 201 ~p~~---~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ip 277 (345)
T 3oix_A 201 PPYF---DIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQ 277 (345)
T ss_dssp CCCC---CHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSE
T ss_pred CCCC---CHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCc
Confidence 9875 445666777777766553 4544421 1233455554 78999999998 799
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehH-HhhCCccchhhh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAES-LLENPALFAGFR 330 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRg-al~nP~lf~~i~ 330 (436)
||++|||.|++|+.++++. |||+|||||+ ++.+||+|.++.
T Consensus 278 IIg~GGI~s~~da~~~l~a-GAd~V~igra~~~~gP~~~~~i~ 319 (345)
T 3oix_A 278 IIGTGGVXTGRDAFEHILC-GASMVQIGTALHQEGPQIFKRIT 319 (345)
T ss_dssp EEEESSCCSHHHHHHHHHH-TCSEEEESHHHHHHCTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHh-CCCEEEEChHHHhcChHHHHHHH
Confidence 9999999999999999985 9999999999 899999998775
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=269.51 Aligned_cols=230 Identities=16% Similarity=0.117 Sum_probs=182.8
Q ss_pred CCcEEEccCCCCC--cHH------HHHHHHHhCCCeEEeCcccchh--h--cc------Chhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVDNS--ELP------FRMLCRRYGAEAAYTPMLHSRI--F--TE------SEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~gvt--d~~------fR~l~~~~Ga~l~~Temisa~~--l--~~------~~~~----~~~~~~~~~~e~p 159 (436)
+|++++|||.... +.+ |++.+ +.|+++++||+++... . .. +... +...-..+..+.+
T Consensus 21 ~NRiv~apm~~~~~~~~~~~~~~~y~~ra-~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~ 99 (729)
T 1o94_A 21 RNRFYQVPHCIGAGSDKPGFQSAHRSVKA-EGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGAL 99 (729)
T ss_dssp SSSEEECCCCCSCTTTCHHHHHHHHHHHH-HTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHHHHTTTCE
T ss_pred CCccEECCCcCCcCCCCcHHHHHHHHHHh-cCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHHHHHhCCCe
Confidence 7899999998753 233 23333 4589999999987531 1 11 1111 1111135678899
Q ss_pred EEEEecCC------------------------C---------------HHHHHHHHHHH-cCCCcEEEEecCC-------
Q 013813 160 LFVQFCAN------------------------D---------------PEILLNAARRV-EPYCDYVDINLGC------- 192 (436)
Q Consensus 160 livQL~g~------------------------d---------------~e~~~~AA~~v-~~g~D~IdLN~GC------- 192 (436)
+++||++. + .++|++||+++ ++|||+||||++|
T Consensus 100 i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a~gyLl~qF 179 (729)
T 1o94_A 100 AGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQF 179 (729)
T ss_dssp EEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHH
T ss_pred EEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHh
Confidence 99999983 1 48999999876 5699999999999
Q ss_pred --CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc-------CCC-hhhHHHHHHHHHHcCccEEEecc
Q 013813 193 --PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-------FPN-LQDTIKYAKMLEDAGCSLLAVHG 260 (436)
Q Consensus 193 --P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl-------g~~-~~d~~~~ak~le~aG~d~I~VHg 260 (436)
|..|.|+|.||++++++++++.+|+++|++++ ++||+||++. |++ .+++.++++.+++ |+|.|.||+
T Consensus 180 lsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l~~-~~d~~~v~~ 258 (729)
T 1o94_A 180 LNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADS-LVDMWDITI 258 (729)
T ss_dssp HCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHGG-GCSEEEEEE
T ss_pred cCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHHHHHHHh-hcCEEEEee
Confidence 99999999999999999999999999999999 7999999985 455 5688999999988 799999998
Q ss_pred Ccc---cc---cCCCCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhh
Q 013813 261 RTR---DE---KDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333 (436)
Q Consensus 261 Rt~---~~---~~~~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~ 333 (436)
++. .. ...+.+ ..+|++++.+++.+++|||++|||.|+++++++++.++||+||+||+++.||+|+.+++.+.
T Consensus 259 g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~~g~ 338 (729)
T 1o94_A 259 GDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQGR 338 (729)
T ss_dssp CCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHHTTC
T ss_pred ecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHHHcCC
Confidence 751 11 011111 23689999999999999999999999999999999977999999999999999999988654
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=267.55 Aligned_cols=231 Identities=15% Similarity=0.120 Sum_probs=181.6
Q ss_pred CCcEEEccCCCCCcH-------HHHHHHHHhCCCeEEeCcccchhhc----------cChhh----hhhhhhccCCCCCE
Q 013813 102 RPKLIVAPMVDNSEL-------PFRMLCRRYGAEAAYTPMLHSRIFT----------ESEKY----RNEEFATCKEDRPL 160 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~-------~fR~l~~~~Ga~l~~Temisa~~l~----------~~~~~----~~~~~~~~~~e~pl 160 (436)
+|+|++|||...++. .|+....+.|+++++||+++..... .+... +...-..+..+.++
T Consensus 26 ~NRiv~apm~~~~~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~i 105 (690)
T 3k30_A 26 KNRFYQVPHCNGMGYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIHEGGGLA 105 (690)
T ss_dssp SSSEEECCCCCSCSSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEeCCCcCCCCCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 789999999976442 3555666779999999998743211 01111 11111245678899
Q ss_pred EEEecCC--------------------------C---------------HHHHHHHHHHHc-CCCcEEEEecC-------
Q 013813 161 FVQFCAN--------------------------D---------------PEILLNAARRVE-PYCDYVDINLG------- 191 (436)
Q Consensus 161 ivQL~g~--------------------------d---------------~e~~~~AA~~v~-~g~D~IdLN~G------- 191 (436)
++||+.. . .++|++||+++. +|||+||||++
T Consensus 106 ~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVeih~a~gy~L~~ 185 (690)
T 3k30_A 106 GIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAHGYSGVH 185 (690)
T ss_dssp EEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCSHHH
T ss_pred EEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHH
Confidence 9999941 0 389999998775 59999999876
Q ss_pred ---CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc------CCChhhHHHHHHHHHHcCccEEEecc
Q 013813 192 ---CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHG 260 (436)
Q Consensus 192 ---CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~I~VHg 260 (436)
||..|.|+|.||++++++.+++.+|+++|++++ ++||.+|+.. |++.++..++++.+++ |+|+|.||+
T Consensus 186 qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~ 264 (690)
T 3k30_A 186 HFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAM 264 (690)
T ss_dssp HHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEEC
T ss_pred HhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEec
Confidence 555899999999999999999999999999998 4678888743 5567889999999998 899999998
Q ss_pred Cccccc----CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhh
Q 013813 261 RTRDEK----DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333 (436)
Q Consensus 261 Rt~~~~----~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~ 333 (436)
++.... .......++++++.+++.+++|||++|||.++++++++++.++||+||+||+++.||||+.+++.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~~~g~ 341 (690)
T 3k30_A 265 GSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKIRDGR 341 (690)
T ss_dssp SCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHTTC
T ss_pred ccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHHHcCC
Confidence 753211 0111235678899999999999999999999999999999978999999999999999999998653
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=251.24 Aligned_cols=229 Identities=15% Similarity=0.164 Sum_probs=182.6
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh-CCCeEEeCcccchh----hc-----cChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY-GAEAAYTPMLHSRI----FT-----ESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~-Ga~l~~Temisa~~----l~-----~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. +|+.....+.++. |+++++||...... +. .+... ++..-..+..+..
T Consensus 40 kNRiv~aPm~~~~a~~dg~~t~~~~~yy~~rA~G~GLiIte~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~ 119 (419)
T 3l5a_A 40 SNRFVLSPMTVNASTKEGYITKADLAYAARRSNSAGMQVTGAAYIEPYGKLFEYGFNIDHDACIPGLTNMASTMKQHGSL 119 (419)
T ss_dssp SSSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSCSEEEEEEEESSGGGCCSTTCEECSSGGGHHHHHHHHHHHHTTSCE
T ss_pred CCCeEeCCCCCCccCCCCCCCHHHHHHHHHHhcCCcEEEecceEeCcccccCCCccccccHHHHHHHHHHHHHHHhcCCE
Confidence 78999999975 4666666666655 68999999765321 10 11111 1111234677888
Q ss_pred EEEEecCCC----------------------------------------HHHHHHHHHHH-cCCCcEEEEecCC------
Q 013813 160 LFVQFCAND----------------------------------------PEILLNAARRV-EPYCDYVDINLGC------ 192 (436)
Q Consensus 160 livQL~g~d----------------------------------------~e~~~~AA~~v-~~g~D~IdLN~GC------ 192 (436)
+++||+-.. .++|++||+++ ++|||+||||++|
T Consensus 120 i~~QL~H~Gr~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~AGfDgVEIH~ahGYLl~Q 199 (419)
T 3l5a_A 120 AIIQLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEKINSIIQQYRDATLRAIKAGFDGVEISIAQRLLIQT 199 (419)
T ss_dssp EEEEEECCGGGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHH
T ss_pred EEEEeccCCCcccccccCCCceeCCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHH
Confidence 999997321 37899999766 5699999999998
Q ss_pred ---CchhhhcCcccccc-cCChHHHHHHHHHHhccc------CccEEEEecc--------CCChhhHHHHHHHHHH-cCc
Q 013813 193 ---PQRIARRGNYGAFL-MDNLPLVKSLVEKLALNL------NVPVSCKIRV--------FPNLQDTIKYAKMLED-AGC 253 (436)
Q Consensus 193 ---P~~~~~~~~~Gs~L-l~~p~~v~eIv~av~~~~------~iPVsVKiRl--------g~~~~d~~~~ak~le~-aG~ 253 (436)
|..|.|+|.||+++ +++++++.+|+++|++++ ++||+||++. |++.+++.++++.+++ +|+
T Consensus 200 FlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gv 279 (419)
T 3l5a_A 200 FFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNI 279 (419)
T ss_dssp HHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCC
T ss_pred ccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 99999999999999 999999999999999987 6799999987 5677899999999999 999
Q ss_pred cEEEeccCccccc---CCCCCc-cCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 254 SLLAVHGRTRDEK---DGKKFR-ADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 254 d~I~VHgRt~~~~---~~~~g~-ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
|+|+||+++.... ....+. .+|+.++.+++.+ ++|||++|||.|+++++++++. ||+|++||+++.||+|+.
T Consensus 280 d~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~--aDlVaiGR~~IanPdlv~ 357 (419)
T 3l5a_A 280 QYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQH--ADMVGMSSPFVTEPDFVH 357 (419)
T ss_dssp CCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG--CSEEEESTHHHHCTTHHH
T ss_pred cEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh--CCcHHHHHHHHHCcHHHH
Confidence 9999999875211 111222 4678889999987 6999999999999999999987 999999999999999999
Q ss_pred hhhhh
Q 013813 328 GFRTA 332 (436)
Q Consensus 328 ~i~~~ 332 (436)
+++.+
T Consensus 358 ki~~G 362 (419)
T 3l5a_A 358 KLAEQ 362 (419)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 98865
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=249.02 Aligned_cols=222 Identities=17% Similarity=0.128 Sum_probs=176.6
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccCh------------------------hhhhhhhhc---c
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESE------------------------KYRNEEFAT---C 154 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~------------------------~~~~~~~~~---~ 154 (436)
+||+++|++.+-....|+.+ .+.|.+++.+++++.+.-..|. ......+.. .
T Consensus 92 ~NPvglAAG~dk~~~~~~~l-~~~GfG~v~~gtvT~~pq~GNp~PR~~rl~e~~~iiN~~GfnN~G~~~~~~~l~~~~~~ 170 (443)
T 1tv5_A 92 INPFGVAAGFDKNGVCIDSI-LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKR 170 (443)
T ss_dssp SSSEEECTTTTTTCSSHHHH-HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHHHHHHHHH
T ss_pred CCCcEECCcccCccHHHHHH-HhcCCCEEEEeeeecCCCCCCCCccEEeccccceeeeccccCChhHHHHHHHHHHHhhh
Confidence 78999998887666677775 5688899998888754211110 000000110 0
Q ss_pred ------CCCCCEEEEecCCC-----HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 ------KEDRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ------~~e~plivQL~g~d-----~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
....|+++||++++ +++++++++.+.+++|+||||++||+.+ |..++++++.+.+|+++|++.
T Consensus 171 ~~~~~~~~~~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNiscPnt~------Glr~lq~~~~l~~il~~v~~~ 244 (443)
T 1tv5_A 171 QEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEE 244 (443)
T ss_dssp HHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccCCCCc------ccccccCHHHHHHHHHHHHHH
Confidence 02468999999998 9999999999988999999999999973 678889999999999999753
Q ss_pred --------------------------------------------------cCcc-EEEEeccCCChhhHHHHHHHHHHcC
Q 013813 224 --------------------------------------------------LNVP-VSCKIRVFPNLQDTIKYAKMLEDAG 252 (436)
Q Consensus 224 --------------------------------------------------~~iP-VsVKiRlg~~~~d~~~~ak~le~aG 252 (436)
.++| |+||++.+++.++..++|+.++++|
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~~~aG 324 (443)
T 1tv5_A 245 IDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETN 324 (443)
T ss_dssp HHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTT
T ss_pred HhhhcccCccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 3679 9999999888788999999999999
Q ss_pred ccEEEeccCcccc---------cCCCCCcc----CHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 253 CSLLAVHGRTRDE---------KDGKKFRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 253 ~d~I~VHgRt~~~---------~~~~~g~a----d~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+|+|++|+++... ..+++|++ .++.++++++.+ ++|||++|||.|++|+.++++. |||+||+||
T Consensus 325 aDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~a-GAd~Vqigr 403 (443)
T 1tv5_A 325 IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEA-GASVCQLYS 403 (443)
T ss_dssp CSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHT-TEEEEEESH
T ss_pred CCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHc-CCCEEEEcH
Confidence 9999999998632 12233332 468899999998 8999999999999999999986 999999999
Q ss_pred HHhh-CCccchhhhh
Q 013813 318 SLLE-NPALFAGFRT 331 (436)
Q Consensus 318 gal~-nP~lf~~i~~ 331 (436)
+++. +||++.++..
T Consensus 404 all~~gP~l~~~i~~ 418 (443)
T 1tv5_A 404 CLVFNGMKSAVQIKR 418 (443)
T ss_dssp HHHHHGGGHHHHHHH
T ss_pred HHHhcChHHHHHHHH
Confidence 9875 9999988763
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-28 Score=238.12 Aligned_cols=168 Identities=19% Similarity=0.295 Sum_probs=142.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc--CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVE--PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~--~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
.+.|+++||+|++++++.++++.++ .|+|+||||++||+.+.+ |..+..+++++.++++++++.+++||+||++
T Consensus 97 ~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g----~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~ 172 (311)
T 1ep3_A 97 PELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHG----GQAFGTDPEVAAALVKACKAVSKVPLYVKLS 172 (311)
T ss_dssp TTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT----TEEGGGCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc----hhhhcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 3789999999999999999999887 789999999999996432 5556679999999999999998999999998
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEe---------ccCccccc-----CCCCCccC----HHHHHHHHhhCCCcEEEccCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAV---------HGRTRDEK-----DGKKFRAD----WNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~V---------HgRt~~~~-----~~~~g~ad----~~~i~~ik~~~~iPVianGGI 295 (436)
.+. .+..++++.++++|+|+|++ |.++.... .+++++.. +++++++++.+++|||++|||
T Consensus 173 ~~~--~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI 250 (311)
T 1ep3_A 173 PNV--TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGV 250 (311)
T ss_dssp SCS--SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSC
T ss_pred CCh--HHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCc
Confidence 654 45678899999999999999 44443211 12234444 588899999999999999999
Q ss_pred CCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 296 RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.|++|+.++++. |||+|++||+++.+|+++.++.
T Consensus 251 ~~~~d~~~~l~~-GAd~V~vg~~~l~~p~~~~~i~ 284 (311)
T 1ep3_A 251 ANAQDVLEMYMA-GASAVAVGTANFADPFVCPKII 284 (311)
T ss_dssp CSHHHHHHHHHH-TCSEEEECTHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHHc-CCCEEEECHHHHcCcHHHHHHH
Confidence 999999999985 8999999999999999998765
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=241.53 Aligned_cols=231 Identities=14% Similarity=0.134 Sum_probs=180.8
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh--CCCeEEeCcccchh----h-----ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY--GAEAAYTPMLHSRI----F-----TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~--Ga~l~~Temisa~~----l-----~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. .|+.....+.++. |+++++||.+.... . ..+... ++..-..+..+..
T Consensus 16 ~NRiv~apm~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~vh~~G~~ 95 (363)
T 3l5l_A 16 RNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSV 95 (363)
T ss_dssp SSSEEECCCCCCCCBTTBCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTCCBCSSHHHHHHHHHHHHHHHHTTCE
T ss_pred eCceEECCCCCCcCCCCCCCHHHHHHHHHHHccCceEEEecceeeCccccCCCCcceecCHHHHHHHHHHHHHHHhcCCE
Confidence 78999999986 4666676666554 78999999765321 1 011111 1111123456677
Q ss_pred EEEEecCC------------------------------------C----------------HHHHHHHHHHHc-CCCcEE
Q 013813 160 LFVQFCAN------------------------------------D----------------PEILLNAARRVE-PYCDYV 186 (436)
Q Consensus 160 livQL~g~------------------------------------d----------------~e~~~~AA~~v~-~g~D~I 186 (436)
+++||+.. . .++|++||+++. +|||+|
T Consensus 96 i~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgV 175 (363)
T 3l5l_A 96 PGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWI 175 (363)
T ss_dssp EEEEEECCGGGCSBCCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred EEEEeccCCccccccccccccccccccccCCCcccCCCCCccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 88888621 0 478999997764 599999
Q ss_pred EEecC---------CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC-------CChhhHHHHHHHH
Q 013813 187 DINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-------PNLQDTIKYAKML 248 (436)
Q Consensus 187 dLN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg-------~~~~d~~~~ak~l 248 (436)
|||++ ||..|.|++.||+++.++.+++.+|+++|++.+ ++||.||++.. ++.+++.++++.+
T Consensus 176 Eih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L 255 (363)
T 3l5l_A 176 ELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRF 255 (363)
T ss_dssp EEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred EEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHH
Confidence 99987 799999999999999999999999999999998 58999999873 4456888999999
Q ss_pred HHcCccEEEeccCcccccCC--CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 249 EDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~--~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
+++|+|+|+||+++...... .....++++++.+++.+++||+++|||.|+++++++++.++||+|++||+++.||+|+
T Consensus 256 ~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~ 335 (363)
T 3l5l_A 256 KAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWA 335 (363)
T ss_dssp HHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTHH
T ss_pred HHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCchHH
Confidence 99999999999764322111 1113578999999999999999999999999999999986699999999999999999
Q ss_pred hhhhhh
Q 013813 327 AGFRTA 332 (436)
Q Consensus 327 ~~i~~~ 332 (436)
.++...
T Consensus 336 ~k~~~~ 341 (363)
T 3l5l_A 336 YFAAKE 341 (363)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=241.50 Aligned_cols=220 Identities=16% Similarity=0.166 Sum_probs=174.9
Q ss_pred CCcEEEccCCCC--------CcHHHHHHHHHhCCCeEEeCcccchh----hc-----cChhh----hhhhhhccCCCCCE
Q 013813 102 RPKLIVAPMVDN--------SELPFRMLCRRYGAEAAYTPMLHSRI----FT-----ESEKY----RNEEFATCKEDRPL 160 (436)
Q Consensus 102 ~~~i~lAPM~gv--------td~~fR~l~~~~Ga~l~~Temisa~~----l~-----~~~~~----~~~~~~~~~~e~pl 160 (436)
+|+|++|||... |+.....+.++..+++++||.+.... .. .+... ++..-..+..+..+
T Consensus 16 kNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~avH~~G~~i 95 (362)
T 4ab4_A 16 PNRIIMAPLTRCRADEGRVPNALMAEYYVQRASAGLILSEATSVSPMGVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRI 95 (362)
T ss_dssp SCSEEECCCCCCCCBTTTBCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred eCccEECCccCCccCCCCCCCHHHHHHHHHHHhhCEEeeeeeEecccccCCCCCCCcCCHHHHHHHHHHHHHHHhcCCEE
Confidence 789999999763 45666667766668899999764321 10 11111 11111245567788
Q ss_pred EEEecCC-----------------------------------C-------------HHHHHHHHHHH-cCCCcEEEEecC
Q 013813 161 FVQFCAN-----------------------------------D-------------PEILLNAARRV-EPYCDYVDINLG 191 (436)
Q Consensus 161 ivQL~g~-----------------------------------d-------------~e~~~~AA~~v-~~g~D~IdLN~G 191 (436)
++||+.. . .++|++||+++ ++|||+||||++
T Consensus 96 ~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~a 175 (362)
T 4ab4_A 96 FLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAAGFDGVEIHGA 175 (362)
T ss_dssp EEEEECCTTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred EEEeccCcccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 8888521 0 46899999766 569999999999
Q ss_pred C---------CchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccCC---------ChhhHHHHHHHHHHcC
Q 013813 192 C---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVFP---------NLQDTIKYAKMLEDAG 252 (436)
Q Consensus 192 C---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg~---------~~~d~~~~ak~le~aG 252 (436)
| |..|.|.+.||++++++++++.+|+++|+++++. ||+||++... ..++..++++.++++|
T Consensus 176 ~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~G 255 (362)
T 4ab4_A 176 NGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRG 255 (362)
T ss_dssp TTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTT
T ss_pred CccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhC
Confidence 8 9999999999999999999999999999999853 9999998742 1346789999999999
Q ss_pred ccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 253 CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 253 ~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
+|+|+||+++. + . ++++.+++.+++|||++||| |+++++++++.++||+|++||+++.||+|+.+++.+
T Consensus 256 vd~i~v~~~~~----~---~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k~~~g 324 (362)
T 4ab4_A 256 IAFICSREREA----D---D---SIGPLIKEAFGGPYIVNERF-DKASANAALASGKADAVAFGVPFIANPDLPARLAAD 324 (362)
T ss_dssp CSEEEEECCCC----T---T---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHTT
T ss_pred CCEEEECCCCC----C---H---HHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHHcC
Confidence 99999999861 1 1 34788999999999999999 999999999987799999999999999999998865
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=240.00 Aligned_cols=221 Identities=17% Similarity=0.164 Sum_probs=175.2
Q ss_pred CCcEEEccCCCC--------CcHHHHHHHHHhCCCeEEeCcccchh----hc-----cChhh----hhhhhhccCCCCCE
Q 013813 102 RPKLIVAPMVDN--------SELPFRMLCRRYGAEAAYTPMLHSRI----FT-----ESEKY----RNEEFATCKEDRPL 160 (436)
Q Consensus 102 ~~~i~lAPM~gv--------td~~fR~l~~~~Ga~l~~Temisa~~----l~-----~~~~~----~~~~~~~~~~e~pl 160 (436)
+|+|++|||... |+...+.+.++..+++++||.+.... .. .+... ++..-..+..+..+
T Consensus 24 kNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~avH~~G~~i 103 (361)
T 3gka_A 24 ANRIIMAPLTRARAGDTRTPNALMARYYAERASAGLIISEATSVTPQGVGYASTPGIWSPEQVDGWRLVTDAVHAAGGRI 103 (361)
T ss_dssp SCSEEECCCCCCCSTTTTCCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred cCccEECCCCCCccCCCCCCCHHHHHHHHHHHhCCEEEEcceeecccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCeE
Confidence 789999999763 45666666666668899999765321 10 11111 11111245567788
Q ss_pred EEEecCC------------------------------------C------------HHHHHHHHHHH-cCCCcEEEEecC
Q 013813 161 FVQFCAN------------------------------------D------------PEILLNAARRV-EPYCDYVDINLG 191 (436)
Q Consensus 161 ivQL~g~------------------------------------d------------~e~~~~AA~~v-~~g~D~IdLN~G 191 (436)
++||+.. . .++|++||+++ +.|||+||||++
T Consensus 104 ~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ii~~f~~AA~~A~~aGfDgVEih~a 183 (361)
T 3gka_A 104 FLQLWHVGRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGAENARAAGFDGVEVHGA 183 (361)
T ss_dssp EEEEECCTTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred EEeeccCCccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 8888520 0 47899999766 569999999999
Q ss_pred C---------CchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccCC---------ChhhHHHHHHHHHHcC
Q 013813 192 C---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVFP---------NLQDTIKYAKMLEDAG 252 (436)
Q Consensus 192 C---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg~---------~~~d~~~~ak~le~aG 252 (436)
| |..|.|++.||++++++++++.+|+++|+++++. ||+||++... ..++..++++.++++|
T Consensus 184 ~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~G 263 (361)
T 3gka_A 184 NGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRR 263 (361)
T ss_dssp TTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTT
T ss_pred CccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcC
Confidence 8 9999999999999999999999999999999853 9999998732 1356789999999999
Q ss_pred ccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 253 CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 253 ~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
+|+|+||+++. + + ++++.+++.+++|||++||| |+++++++++.++||+|++||+++.||+|+.+++.+
T Consensus 264 vd~i~v~~~~~----~---~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k~~~g 332 (361)
T 3gka_A 264 IAFLFARESFG----G---D---AIGQQLKAAFGGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIANPDLPRRFKLN 332 (361)
T ss_dssp CSEEEEECCCS----T---T---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred CCEEEECCCCC----C---H---HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHHhC
Confidence 99999998861 1 1 34788999999999999999 999999999987799999999999999999998865
Q ss_pred h
Q 013813 333 E 333 (436)
Q Consensus 333 ~ 333 (436)
.
T Consensus 333 ~ 333 (361)
T 3gka_A 333 A 333 (361)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=235.98 Aligned_cols=167 Identities=19% Similarity=0.169 Sum_probs=141.5
Q ss_pred CCCEEEEecCCC-----HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc--------
Q 013813 157 DRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-------- 223 (436)
Q Consensus 157 e~plivQL~g~d-----~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-------- 223 (436)
..++++||++++ ++++.++++.+++.+|+||||++||++. |..++++++.+.+|+++|++.
T Consensus 181 ~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~------Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~ 254 (415)
T 3i65_A 181 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNN 254 (415)
T ss_dssp TCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------------CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------CcccccCHHHHHHHHHHHHHHHHhhcccc
Confidence 467999999998 8999999999988899999999999973 678999999999999999875
Q ss_pred ------------cCcc-EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc---------cCCCCCccCH----HH
Q 013813 224 ------------LNVP-VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------KDGKKFRADW----NA 277 (436)
Q Consensus 224 ------------~~iP-VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~---------~~~~~g~ad~----~~ 277 (436)
..+| |+||++.+++.++..++|+.++++|+|+|++|+++... ..+.+|++.| +.
T Consensus 255 ~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~ 334 (415)
T 3i65_A 255 IMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKF 334 (415)
T ss_dssp CSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHH
T ss_pred cccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHH
Confidence 2689 99999999888889999999999999999999988632 2334555554 78
Q ss_pred HHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhh
Q 013813 278 IKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 330 (436)
Q Consensus 278 i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~ 330 (436)
|+++++.+ ++|||++|||.|.+|+.+++.. |||+|||||+++.+ ||+|.++.
T Consensus 335 I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~a-GAd~VqIgra~l~~GP~~~~~i~ 389 (415)
T 3i65_A 335 ICEMYNYTNKQIPIIASGGIFSGLDALEKIEA-GASVCQLYSCLVFNGMKSAVQIK 389 (415)
T ss_dssp HHHHHHHTTTCSCEEECSSCCSHHHHHHHHHH-TEEEEEESHHHHHHGGGHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc-CCCEEEEcHHHHhcCHHHHHHHH
Confidence 99999998 7999999999999999999985 99999999999877 99998775
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-26 Score=258.03 Aligned_cols=223 Identities=16% Similarity=0.223 Sum_probs=173.7
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchh-hccCh--------------------------------hhh-
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRI-FTESE--------------------------------KYR- 147 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~-l~~~~--------------------------------~~~- 147 (436)
++|+++|||...++.+|+..+...|.+++.++.++... ...+. ...
T Consensus 543 ~nPv~lAa~~~~~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~~~~~~~~n~e~~~~~~~~~~~ 622 (1025)
T 1gte_A 543 INPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWC 622 (1025)
T ss_dssp SSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCSSCHHHHH
T ss_pred cCcccccCCCCCCCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccccccccCCchhheeeeccccchhHHHHH
Confidence 37999999999999999999999999988877665321 00000 000
Q ss_pred --hhhhhccCCCCCEEEEe-cCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 148 --NEEFATCKEDRPLFVQF-CANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 148 --~~~~~~~~~e~plivQL-~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
...++...++.|+++|+ +|++++++.++++++ +.|+|+|+||+|||+. ...+++|++++++++++.++++++++.
T Consensus 623 ~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~~G~~~~~~~~~~~~iv~~v~~~ 701 (1025)
T 1gte_A 623 QSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERGMGLACGQDPELVRNICRWVRQA 701 (1025)
T ss_dssp HHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC-----SBGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCcccccccCHHHHHHHHHHHHHh
Confidence 01112223467899988 688999999999887 4699999999999998 455679999999999999999999999
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe----------------------ccCcccccCCCCCccCH----HH
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV----------------------HGRTRDEKDGKKFRADW----NA 277 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V----------------------HgRt~~~~~~~~g~ad~----~~ 277 (436)
+++||+||++.+ ..++.++++.++++|+|+|++ |+|+.. .++++++.| ++
T Consensus 702 ~~~Pv~vK~~~~--~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~--gg~sg~~~~~~~~~~ 777 (1025)
T 1gte_A 702 VQIPFFAKLTPN--VTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTY--GGVSGTAIRPIALRA 777 (1025)
T ss_dssp CSSCEEEEECSC--SSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCC--EEEESGGGHHHHHHH
T ss_pred hCCceEEEeCCC--hHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccC--CCCCcccchhHHHHH
Confidence 999999999874 357888999999999999999 555432 234456664 78
Q ss_pred HHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 278 IKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 278 i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
+.++++.+ ++|||++|||.|++|+.++|.. |||+|||||+++. +|.++.++.
T Consensus 778 v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~-Ga~~v~vg~~~l~~~~~~~~~~~ 831 (1025)
T 1gte_A 778 VTTIARALPGFPILATGGIDSAESGLQFLHS-GASVLQVCSAVQNQDFTVIQDYC 831 (1025)
T ss_dssp HHHHHHHSTTCCEEEESSCCSHHHHHHHHHT-TCSEEEESHHHHTSCTTHHHHHH
T ss_pred HHHHHHHcCCCCEEEecCcCCHHHHHHHHHc-CCCEEEEeeccccCCccHHHHHH
Confidence 99999988 8999999999999999999985 9999999999998 554555443
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=228.59 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=135.5
Q ss_pred HHHHHHHHHHH--cCCCcEEEEecCC---------Cchhhh-cCcccc-cccCChHHHHHHHHHHhcccC-ccEEEEecc
Q 013813 169 PEILLNAARRV--EPYCDYVDINLGC---------PQRIAR-RGNYGA-FLMDNLPLVKSLVEKLALNLN-VPVSCKIRV 234 (436)
Q Consensus 169 ~e~~~~AA~~v--~~g~D~IdLN~GC---------P~~~~~-~~~~Gs-~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRl 234 (436)
+++|++||+++ ++|||+||||++| |..|.+ ++.||+ +++++++++.+|+++|+++++ .||.||++.
T Consensus 173 i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~ 252 (379)
T 3aty_A 173 IPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISP 252 (379)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 45677888765 4699999999986 998999 999999 999999999999999999985 489999987
Q ss_pred CC---------ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH
Q 013813 235 FP---------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 235 g~---------~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l 305 (436)
.. +.+++.++++.++++|+++|++|+++... .. ...+ ++.+++.+++|||++||| +++++++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~-~~----~~~~-~~~ir~~~~iPvi~~G~i-t~~~a~~~l 325 (379)
T 3aty_A 253 LNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN-QQ----IGDV-VAWVRGSYSGVKISNLRY-DFEEADQQI 325 (379)
T ss_dssp TCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS-CC----CCCH-HHHHHTTCCSCEEEESSC-CHHHHHHHH
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC-CC----ccHH-HHHHHHHCCCcEEEECCC-CHHHHHHHH
Confidence 32 34678899999999999999999876432 11 1236 899999999999999999 999999999
Q ss_pred HhcCcceeeeehHHhhCCccchhhhhh
Q 013813 306 EETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
+.++||+||+||+++.||+|+.+++.+
T Consensus 326 ~~g~aD~V~igR~~l~~P~l~~k~~~g 352 (379)
T 3aty_A 326 REGKVDAVAFGAKFIANPDLVERAQQN 352 (379)
T ss_dssp HTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HcCCCeEEEecHHHHhCcHHHHHHHcC
Confidence 987799999999999999999998754
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=231.38 Aligned_cols=231 Identities=17% Similarity=0.170 Sum_probs=175.7
Q ss_pred CCcEEEccCCCC--------CcHHHHHHHHHh--CCCeEEeCcccch--h--hcc------Chhh----hhhhhhccCCC
Q 013813 102 RPKLIVAPMVDN--------SELPFRMLCRRY--GAEAAYTPMLHSR--I--FTE------SEKY----RNEEFATCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~gv--------td~~fR~l~~~~--Ga~l~~Temisa~--~--l~~------~~~~----~~~~~~~~~~e 157 (436)
+|+|++|||... |+.....+.++. |+++++||.+... . +.. +... +...-..+..+
T Consensus 26 kNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~gG~GLIIte~~~V~~~g~~~~~~~~gi~~d~~i~~~k~l~~avH~~G 105 (407)
T 3tjl_A 26 QTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHAKAWKVITDKVHANG 105 (407)
T ss_dssp SCSEEBCCCCCCBSCTTSCCBHHHHHHHHHTCCSTTCEEEEEEEESSGGGCCCSSBCCBCSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEECCCCCCccCCCCCCCHHHHHHHHHHHcCCceEEEEcceEECCccCCCCCcCcccCCHHHHHHHHHHHHHHHhcC
Confidence 789999999852 566677777665 5799999976432 1 111 1111 11111345677
Q ss_pred CCEEEEecCCC-------------------------------------------------HHH-HHHHHHHH-cCCCcEE
Q 013813 158 RPLFVQFCAND-------------------------------------------------PEI-LLNAARRV-EPYCDYV 186 (436)
Q Consensus 158 ~plivQL~g~d-------------------------------------------------~e~-~~~AA~~v-~~g~D~I 186 (436)
..+++||+... .++ |++||+++ +.|||+|
T Consensus 106 ~~i~~QL~H~Gr~~~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~pr~lt~~eI~~ii~~~~~~aa~~a~~aGfdgv 185 (407)
T 3tjl_A 106 SFVSTQLIFLGRVADPAVMKTRGLNPVSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYI 185 (407)
T ss_dssp CEEEEEEECCGGGSCHHHHHHTTCCCEESSSCCSSHHHHHHHHHTTCCCEECCHHHHHHHHHTHHHHHHHHHHHTTCSEE
T ss_pred CEEEEEeccCCCccchhhcccCCCcccCCCCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 88999997311 245 89999766 5699999
Q ss_pred EEecCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCC---------C----hhhHHH
Q 013813 187 DINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP---------N----LQDTIK 243 (436)
Q Consensus 187 dLN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~---------~----~~d~~~ 243 (436)
|||++| |..|.+.|.||++++++.+++.+|+++|+++++ .||+||++... + .++..+
T Consensus 186 eih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~ 265 (407)
T 3tjl_A 186 ELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSY 265 (407)
T ss_dssp EEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHHHHHHH
T ss_pred EECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccccccccHHHHHH
Confidence 999999 999999999999999999999999999999985 48999998632 2 234678
Q ss_pred HHHHH---HHcC--ccEEEec-cCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh---cCcceee
Q 013813 244 YAKML---EDAG--CSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE---TGCEGVL 314 (436)
Q Consensus 244 ~ak~l---e~aG--~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~---tGaDgVm 314 (436)
+++.| ++.| +++|+|| +|+..+.... ...+|..+..+++..++|||+||||.+.+|+.++++. ++||+||
T Consensus 266 l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~-~~~~~~~~~~ir~~~~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa 344 (407)
T 3tjl_A 266 LVHELQQRADKGQGIAYISVVEPRVSGNVDVS-EEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVG 344 (407)
T ss_dssp HHHHHHHHHHTTCCCSEEEEECTTEETTEECC-GGGCCCCSHHHHHHCCSEEEEESCGGGGTTTTHHHHHHHTTSSEEEE
T ss_pred HHHHHHhHhhcCCceeEEEEEccccCCCCcCC-ccchhHHHHHHHHHhCCCEEecCCCCCHHHHHHHHHhhccCCCeEEE
Confidence 89999 8889 9999998 6655432111 1123455778888889999999999999988888877 7899999
Q ss_pred eehHHhhCCccchhhhhhh
Q 013813 315 SAESLLENPALFAGFRTAE 333 (436)
Q Consensus 315 IGRgal~nP~lf~~i~~~~ 333 (436)
+||+++.||||+.+++.+.
T Consensus 345 ~GR~~iaNPdL~~ri~~g~ 363 (407)
T 3tjl_A 345 FSRYFTSNPNLVWKLRDGI 363 (407)
T ss_dssp CSHHHHHCTTHHHHHHHTC
T ss_pred eChhhhhCchHHHHHHcCC
Confidence 9999999999999987643
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=212.68 Aligned_cols=201 Identities=17% Similarity=0.214 Sum_probs=156.8
Q ss_pred CCcEEEccCC--CCC----cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHH
Q 013813 102 RPKLIVAPMV--DNS----ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~--gvt----d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~ 174 (436)
+.|+++|||+ +++ +.+|++.|+++|+..++|+|.+. .+. . +....++.|+.+||++ +|++...+
T Consensus 80 ~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~-~le----~----v~~~~~~~~~~~QLy~~~d~~~~~~ 150 (368)
T 2nli_A 80 KAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGA-TFE----E----ISEGLNGGPRWFQIYMAKDDQQNRD 150 (368)
T ss_dssp SSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCSS-CHH----H----HHHHHTTCCEEEEECCBSSHHHHHH
T ss_pred CCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHhH-HHH----H----HHHhCCCCCEEEEEeccCCHHHHHH
Confidence 5699999999 877 58999999999999999999862 221 1 1111246899999998 88888899
Q ss_pred HHHHHcC-CCcEEEEecCCCch------------------hhhc----Ccccccc---c--CChHHHHHHHHHHhcccCc
Q 013813 175 AARRVEP-YCDYVDINLGCPQR------------------IARR----GNYGAFL---M--DNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 175 AA~~v~~-g~D~IdLN~GCP~~------------------~~~~----~~~Gs~L---l--~~p~~v~eIv~av~~~~~i 226 (436)
++++++. |+++|+||++||.. +... ...|+.+ + .++.+..++++++++.+++
T Consensus 151 ~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~~~~~ 230 (368)
T 2nli_A 151 ILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGL 230 (368)
T ss_dssp HHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHHHHSSS
T ss_pred HHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHHHHcCC
Confidence 9987764 89999999999982 2210 2346655 3 3777888889999999999
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~ 304 (436)
||+||.- ...+.++.++++|+|+|+|+++...+ ...+++.|+.+.++++.+ ++|||++|||++.+|+.++
T Consensus 231 PvivK~v------~~~e~a~~a~~~Gad~I~vs~~ggr~--~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~ka 302 (368)
T 2nli_A 231 PVFVKGI------QHPEDADMAIKRGASGIWVSNHGARQ--LYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKA 302 (368)
T ss_dssp CEEEEEE------CSHHHHHHHHHTTCSEEEECCGGGTS--CSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHH
T ss_pred CEEEEcC------CCHHHHHHHHHcCCCEEEEcCCCcCC--CCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHH
Confidence 9999942 22456889999999999995543222 234578899999999887 6999999999999999999
Q ss_pred HHhcCcceeeeehHHh
Q 013813 305 LEETGCEGVLSAESLL 320 (436)
Q Consensus 305 l~~tGaDgVmIGRgal 320 (436)
|.. |||+|||||+++
T Consensus 303 lal-GAd~V~iGr~~l 317 (368)
T 2nli_A 303 LAS-GADVVALGRPVL 317 (368)
T ss_dssp HHT-TCSEEEECHHHH
T ss_pred HHc-CCCEEEECHHHH
Confidence 995 999999999665
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=203.51 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=150.7
Q ss_pred CCcEEEccCCCCC-------cHHHHHHHHHhCCCeEEeCcccchhhccChh--hhhhhhhccCCCCCEEEEec-CCCHHH
Q 013813 102 RPKLIVAPMVDNS-------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEK--YRNEEFATCKEDRPLFVQFC-ANDPEI 171 (436)
Q Consensus 102 ~~~i~lAPM~gvt-------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~--~~~~~~~~~~~e~plivQL~-g~d~e~ 171 (436)
++|+++|||+|++ +.+|++.|+++|+.+++++|.+. + .+.. ...+.+.....+.|+++|+. |.+++.
T Consensus 55 ~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~--l-~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~ 131 (349)
T 1p0k_A 55 SSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA--L-KDPSERLSYEIVRKENPNGLIFANLGSEATAAQ 131 (349)
T ss_dssp SCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT--T-TCHHHHHHHHHHHHHCSSSCEEEEEETTCCHHH
T ss_pred CCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc--c-cCcccccceehhhhhCCCceeEEeecCCCCHHH
Confidence 6799999999999 89999999999999989888764 2 1211 11111232356899999999 889988
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHH--HHHHHHHHhcccCccEEEEec-cCCChhhHHHHHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPL--VKSLVEKLALNLNVPVSCKIR-VFPNLQDTIKYAKML 248 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~--v~eIv~av~~~~~iPVsVKiR-lg~~~~d~~~~ak~l 248 (436)
+.++++. .|+|+|+||++||+...... | ++++ +.++++++++.+++||.+|+. .+.+ .+.++.+
T Consensus 132 ~~~~~~~--~gad~i~i~~~~~~~~~~~~--~-----~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~----~~~a~~a 198 (349)
T 1p0k_A 132 AKEAVEM--IGANALQIHLNVIQEIVMPE--G-----DRSFSGALKRIEQICSRVSVPVIVKEVGFGMS----KASAGKL 198 (349)
T ss_dssp HHHHHHH--TTCSEEEEEECTTTTC---------------CTTHHHHHHHHHHHCSSCEEEEEESSCCC----HHHHHHH
T ss_pred HHHHHHh--cCCCeEEecccchhhhcCCC--C-----CcchHHHHHHHHHHHHHcCCCEEEEecCCCCC----HHHHHHH
Confidence 7765433 47999999999998533221 1 3333 778899999888999999973 4344 3568889
Q ss_pred HHcCccEEEe--ccCcccc-----cC-------CCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 249 EDAGCSLLAV--HGRTRDE-----KD-------GKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 249 e~aG~d~I~V--HgRt~~~-----~~-------~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
.++|+|+|+| ||+|... +. ...+...++.+.++++.+ ++|||++|||.+++|+.+++.. |||+|
T Consensus 199 ~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~-GAd~V 277 (349)
T 1p0k_A 199 YEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIAL-GASCT 277 (349)
T ss_dssp HHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEE
T ss_pred HHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHc-CCCEE
Confidence 9999999999 7775210 10 123456788999999887 8999999999999999999986 99999
Q ss_pred eeehHHhhCC
Q 013813 314 LSAESLLENP 323 (436)
Q Consensus 314 mIGRgal~nP 323 (436)
+|||+++...
T Consensus 278 ~iG~~~l~~~ 287 (349)
T 1p0k_A 278 GMAGHFLKAL 287 (349)
T ss_dssp EECHHHHHHH
T ss_pred EEcHHHHHHH
Confidence 9999887653
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=202.42 Aligned_cols=201 Identities=14% Similarity=0.146 Sum_probs=153.5
Q ss_pred CCcEEEccCCCCCcHH-------HHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHH
Q 013813 102 RPKLIVAPMVDNSELP-------FRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILL 173 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~-------fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~ 173 (436)
+.|+++||| ++++.. |++.|+++|+..++|+|.+. .+. . +.....+.|+.+||++ .|++...
T Consensus 94 ~~Pi~iAPm-g~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~-~le----~----v~~~~~~~~~~~QLy~~~d~~~~~ 163 (392)
T 2nzl_A 94 SMPICVGAT-AMQRMAHVDGELATVRACQSLGTGMMLSSWATS-SIE----E----VAEAGPEALRWLQLYIYKDREVTK 163 (392)
T ss_dssp SSSEEECCC-SCGGGTSTTHHHHHHHHHHHHTCEEEECTTCSS-CHH----H----HHHHCTTSEEEEEECCBSSHHHHH
T ss_pred CCceEeccc-cccccccchHHHHHHHHHHHcCCCeeccchHHH-HHH----H----HHHhcCCCcEEEEEEecCCHHHHH
Confidence 469999999 888876 99999999999999998862 221 1 1112246899999987 7888888
Q ss_pred HHHHHHcC-CCcEEEEecCCCch---------------hh-----h------cC----cccc---cccC---ChHHHHHH
Q 013813 174 NAARRVEP-YCDYVDINLGCPQR---------------IA-----R------RG----NYGA---FLMD---NLPLVKSL 216 (436)
Q Consensus 174 ~AA~~v~~-g~D~IdLN~GCP~~---------------~~-----~------~~----~~Gs---~Ll~---~p~~v~eI 216 (436)
+.++++++ |+++|+||++||.. .. . .. +.|+ .++. ++++..++
T Consensus 164 ~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~ 243 (392)
T 2nzl_A 164 KLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWED 243 (392)
T ss_dssp HHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHH
T ss_pred HHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHH
Confidence 98887754 89999999999984 11 0 00 1122 2333 77777888
Q ss_pred HHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccC
Q 013813 217 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGN 294 (436)
Q Consensus 217 v~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGG 294 (436)
++++++.+++||+||.- .+ .+.|+.+.++|+|+|+|+++...+ ...+++.|+.+.++++.+ ++|||++||
T Consensus 244 i~~lr~~~~~PvivKgv--~~----~e~A~~a~~aGad~I~vs~~ggr~--~~~g~~~~~~l~~v~~av~~~ipVia~GG 315 (392)
T 2nzl_A 244 IKWLRRLTSLPIVAKGI--LR----GDDAREAVKHGLNGILVSNHGARQ--LDGVPATIDVLPEIVEAVEGKVEVFLDGG 315 (392)
T ss_dssp HHHHC--CCSCEEEEEE--CC----HHHHHHHHHTTCCEEEECCGGGTS--STTCCCHHHHHHHHHHHHTTSSEEEECSS
T ss_pred HHHHHHhhCCCEEEEec--CC----HHHHHHHHHcCCCEEEeCCCCCCc--CCCCcChHHHHHHHHHHcCCCCEEEEECC
Confidence 99999999999999942 12 455889999999999996554332 234578899999999887 599999999
Q ss_pred CCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 295 VRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
|.+.+|+.++|.. |||+|||||+++.
T Consensus 316 I~~g~Dv~kalal-GAd~V~iGr~~l~ 341 (392)
T 2nzl_A 316 VRKGTDVLKALAL-GAKAVFVGRPIVW 341 (392)
T ss_dssp CCSHHHHHHHHHT-TCSEEEECHHHHH
T ss_pred CCCHHHHHHHHHh-CCCeeEECHHHHH
Confidence 9999999999995 9999999997664
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=198.52 Aligned_cols=229 Identities=17% Similarity=0.193 Sum_probs=171.9
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHhCCCeEEeCcccch--h--hc-----cChhh----hhhhhhccCCCCCE
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRYGAEAAYTPMLHSR--I--FT-----ESEKY----RNEEFATCKEDRPL 160 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~Ga~l~~Temisa~--~--l~-----~~~~~----~~~~~~~~~~e~pl 160 (436)
+|+|++|||.. +|+.....+.++.++++++||.+... . .. .+... +...-..+..+..+
T Consensus 16 kNRiv~apm~~~~a~~dg~~t~~~~~~y~~rA~gGliite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i 95 (358)
T 4a3u_A 16 KNRIWMAPLTRGRATRDHVPTEIMAEYYAQRASAGLIISEATGISQEGLGWPYAPGIWSDAQVEAWLPITQAVHDAGGLI 95 (358)
T ss_dssp SCSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSSSEEEEEEESSTTTCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCceEEcccCCCccCCCCCCCHHHHHHHHHHcCCCEEEEeeeEECccccCCCCCcccCchHhHHHHHHHHHHHHhcCCce
Confidence 78999999974 46777777887778899999975432 1 10 01111 11111345678889
Q ss_pred EEEecCCC-----------------------------------------------HHHHHHHHHHH-cCCCcEEEEecC-
Q 013813 161 FVQFCAND-----------------------------------------------PEILLNAARRV-EPYCDYVDINLG- 191 (436)
Q Consensus 161 ivQL~g~d-----------------------------------------------~e~~~~AA~~v-~~g~D~IdLN~G- 191 (436)
++||+... .++|++||+++ ++|||+||||++
T Consensus 96 ~~QL~H~Gr~~~~~~~g~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~AGFDgVEIH~ah 175 (358)
T 4a3u_A 96 FAQLWHMGRMVPSNVSGMQPVAPSASQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHALKAGFDGVQIHAAN 175 (358)
T ss_dssp EEEEECCGGGCCHHHHSSCCEESSCEECSSEEECSSSEEECCEEEECCGGGHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred eeccccccccccccccccCCCCCcccccCCcccccCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHcCCCeEeecccC
Confidence 99985211 36799999776 569999999975
Q ss_pred --------CCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccC------C---ChhhHHHHHHHHHHcCc
Q 013813 192 --------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF------P---NLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 192 --------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg------~---~~~d~~~~ak~le~aG~ 253 (436)
+|..|.|+|.||+++.++.+++.||+++|++.++ -+|.||+... . +.+....+++.+++.|+
T Consensus 176 GYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 255 (358)
T 4a3u_A 176 GYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDI 255 (358)
T ss_dssp TSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTC
T ss_pred CCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCc
Confidence 8999999999999999999999999999999884 4577777542 1 22344667888999999
Q ss_pred cEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhh
Q 013813 254 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333 (436)
Q Consensus 254 d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~ 333 (436)
+.+.++.......... .....+.+.+|+.+..||++ ||+.+++.++++|+.+.||.|.+||+++.||+|.++++.+.
T Consensus 256 ~~i~~~~~~~~~~~~~--~~~~~~a~~ik~~~~~~v~~-~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k~~~g~ 332 (358)
T 4a3u_A 256 AFLGMREGAVDGTFGK--TDQPKLSPEIRKVFKPPLVL-NQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFFEKA 332 (358)
T ss_dssp SEEEEECCBTTCSSSB--CSSCCCHHHHHHHCCSCEEE-ESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHHHHHTC
T ss_pred cccccccccccCcccc--cccHHHHHHHHHhcCCcEEE-eCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHHHHhCC
Confidence 9999986654432221 12234467788888877775 66789999999999977999999999999999999998653
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=196.39 Aligned_cols=198 Identities=21% Similarity=0.234 Sum_probs=152.3
Q ss_pred CCcEEEccCCCCCcHH-------HHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEec-CCCHHHHH
Q 013813 102 RPKLIVAPMVDNSELP-------FRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC-ANDPEILL 173 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~-------fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~-g~d~e~~~ 173 (436)
+.|+++||| |+++.+ |++.|+++|+..++++|.+... + ++....+ .|..+||+ ++|++...
T Consensus 71 ~~Pi~iAPm-g~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~i-----e----ev~~~~~-~~~~~QLy~~~d~~~~~ 139 (370)
T 1gox_A 71 SMPIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTLSSWATSSV-----E----EVASTGP-GIRFFQLYVYKDRNVVA 139 (370)
T ss_dssp SSSEEECCC-SCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCH-----H----HHHTTCC-CCEEEEECCBSSHHHHH
T ss_pred CCceeEccc-chhhhccchHHHHHHHHHHHcCCCeeccCCCCCCH-----H----HHHhhcC-CCceEEEecCCCchHHH
Confidence 469999999 899887 9999999999999999885421 1 1111112 78999996 88999888
Q ss_pred HHHHHHc-CCCcEEEEecCCCch--------------------hhhc-------Ccccccc------cCChHHHHHHHHH
Q 013813 174 NAARRVE-PYCDYVDINLGCPQR--------------------IARR-------GNYGAFL------MDNLPLVKSLVEK 219 (436)
Q Consensus 174 ~AA~~v~-~g~D~IdLN~GCP~~--------------------~~~~-------~~~Gs~L------l~~p~~v~eIv~a 219 (436)
+.++.++ .|++.|+||++||.. +... ...|+.+ +.++.+..+.+++
T Consensus 140 ~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~ 219 (370)
T 1gox_A 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAW 219 (370)
T ss_dssp HHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHH
Confidence 8887775 489999999999974 1111 1224443 4466666677999
Q ss_pred HhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCC
Q 013813 220 LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNV 295 (436)
Q Consensus 220 v~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI 295 (436)
+++.+++||.+|.... .+.++.+.++|+|+|+| |+.. + ...+.++|+.+.++++.+ ++|||++|||
T Consensus 220 l~~~~~~pv~vK~~~~------~e~a~~a~~~Gad~I~vs~~ggr--~--~~~~~~~~~~l~~v~~~~~~~ipvia~GGI 289 (370)
T 1gox_A 220 LQTITSLPILVKGVIT------AEDARLAVQHGAAGIIVSNHGAR--Q--LDYVPATIMALEEVVKAAQGRIPVFLDGGV 289 (370)
T ss_dssp HHHHCCSCEEEECCCS------HHHHHHHHHTTCSEEEECCGGGT--S--STTCCCHHHHHHHHHHHTTTSSCEEEESSC
T ss_pred HHHHhCCCEEEEecCC------HHHHHHHHHcCCCEEEECCCCCc--c--CCCcccHHHHHHHHHHHhCCCCEEEEECCC
Confidence 9998999999997642 34578899999999999 5421 1 223367899999999988 7999999999
Q ss_pred CCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 296 RHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
.+.+|+.+++.. |||+|||||+++.
T Consensus 290 ~~~~D~~k~l~~-GAdaV~iGr~~l~ 314 (370)
T 1gox_A 290 RRGTDVFKALAL-GAAGVFIGRPVVF 314 (370)
T ss_dssp CSHHHHHHHHHH-TCSEEEECHHHHH
T ss_pred CCHHHHHHHHHc-CCCEEeecHHHHH
Confidence 999999999985 9999999998764
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=185.69 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=125.1
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHc----CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE
Q 013813 155 KEDRPLFVQFCANDPEILLNAARRVE----PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~~v~----~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV 230 (436)
..+.|+++||.|++++++.+.++.++ .++|+|+||++||+.. .|..+..+++.+.++++++++.+..|+.+
T Consensus 124 ~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~-----g~~~l~~~~~~~~~i~~~v~~~~~~pv~v 198 (354)
T 3tjx_A 124 YGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP-----GKPQVAYDFDAMRQCLTAVSEVYPHSFGV 198 (354)
T ss_dssp TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC--------------CTTSHHHHHHHHHHHHHHCCSCEEE
T ss_pred cCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCc-----chhhhccCHHHHHHHHHHHHHHhhccccc
Confidence 45789999999999999988876543 3789999999999863 26678889999999999999999999999
Q ss_pred EeccCCChhhHHHHHHHHHHcC-ccEEEe----------ccCcc-------cccCCCCCccCHHH----HHHHHhhC-CC
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAG-CSLLAV----------HGRTR-------DEKDGKKFRADWNA----IKAVKNAL-RI 287 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG-~d~I~V----------HgRt~-------~~~~~~~g~ad~~~----i~~ik~~~-~i 287 (436)
|++.+.+.......+..+.+.+ ++.++. ..++. .+..+.+|++.|+. +.++++.+ ++
T Consensus 199 K~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~~~ 278 (354)
T 3tjx_A 199 KMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGK 278 (354)
T ss_dssp EECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTS
T ss_pred ccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcCCC
Confidence 9999887655555666665543 444332 11221 11234566666654 45555554 79
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHH-hhCCccchhhh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFR 330 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRga-l~nP~lf~~i~ 330 (436)
|||++|||.|.+||.+++.. |||+||||+|+ +.+|++|.++.
T Consensus 279 pIIg~GGI~s~~Da~e~i~a-GAs~Vqv~Ta~~y~GP~~~~~I~ 321 (354)
T 3tjx_A 279 LIFGCGGVYTGEDAFLHVLA-GASMVQVGTALQEEGPSIFERLT 321 (354)
T ss_dssp EEEEESSCCSHHHHHHHHHH-TEEEEEECHHHHHHCTTHHHHHH
T ss_pred cEEEeCCcCCHHHHHHHHHc-CCCEEEEChhhhhcCchHHHHHH
Confidence 99999999999999999985 99999999996 57899998775
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-20 Score=184.68 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=148.6
Q ss_pred HHhC-CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 98 TKLG-RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 98 ~~lg-~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
+.+| +.||++|||.++|+..|+..+.+.|+ +++.+++++.+.+....+.... + .+.|+.||++..+++ +.+.
T Consensus 7 ~~l~~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~-~----~~~p~gvnl~~~~~~-~~~~ 80 (332)
T 2z6i_A 7 ELLKIDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKS-L----TDKPFGVNIMLLSPF-VEDI 80 (332)
T ss_dssp HHHTCSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHH-H----CCSCEEEEECTTSTT-HHHH
T ss_pred HHhCCCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHH-h----cCCCEEEEecCCCCC-HHHH
Confidence 4455 77999999999999999999999987 8888888876554322111111 1 258999999997665 4555
Q ss_pred HHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCcc
Q 013813 176 ARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 176 A~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d 254 (436)
++. ++.|+|+|++|+|||.. +++.+++ .++||.+|+ ...+.++.+++.|+|
T Consensus 81 ~~~a~~~g~d~V~~~~g~p~~--------------------~i~~l~~-~g~~v~~~v-------~~~~~a~~~~~~GaD 132 (332)
T 2z6i_A 81 VDLVIEEGVKVVTTGAGNPSK--------------------YMERFHE-AGIIVIPVV-------PSVALAKRMEKIGAD 132 (332)
T ss_dssp HHHHHHTTCSEEEECSSCGGG--------------------THHHHHH-TTCEEEEEE-------SSHHHHHHHHHTTCS
T ss_pred HHHHHHCCCCEEEECCCChHH--------------------HHHHHHH-cCCeEEEEe-------CCHHHHHHHHHcCCC
Confidence 544 46799999999999832 3455554 378999986 224567888999999
Q ss_pred EEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 255 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 255 ~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
+|.++|+...+..+ ...+|++++++++.+++||+++|||.+++++.+++.. |||+|++||+++.+|+..
T Consensus 133 ~i~v~g~~~GG~~g--~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~-GAdgV~vGs~~l~~~e~~ 201 (332)
T 2z6i_A 133 AVIAEGMEAGGHIG--KLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFML-GAEAVQVGTRFVVAKESN 201 (332)
T ss_dssp CEEEECTTSSEECC--SSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHT-TCSEEEECHHHHTBTTCC
T ss_pred EEEEECCCCCCCCC--CccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc-CCCEEEecHHHhcCcccc
Confidence 99999874322111 2467999999999999999999999999999999985 999999999999999754
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-20 Score=193.95 Aligned_cols=201 Identities=16% Similarity=0.164 Sum_probs=154.4
Q ss_pred CCcEEEccCCC---C----CcHHHHHHHHH--hCCCeEEeCcccchhhccChhhhhhhhhcc-CCCCCEEEEec-CCCHH
Q 013813 102 RPKLIVAPMVD---N----SELPFRMLCRR--YGAEAAYTPMLHSRIFTESEKYRNEEFATC-KEDRPLFVQFC-ANDPE 170 (436)
Q Consensus 102 ~~~i~lAPM~g---v----td~~fR~l~~~--~Ga~l~~Temisa~~l~~~~~~~~~~~~~~-~~e~plivQL~-g~d~e 170 (436)
+.|+++|||++ + ++.+|++.|++ +|+..++++|.+... ... .... ..+.|..+||+ +.|++
T Consensus 189 ~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~-----e~v---~~~~~~~~~~~~~QLy~~~d~~ 260 (511)
T 1kbi_A 189 DVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSP-----EEI---IEAAPSDKQIQWYQLYVNSDRK 260 (511)
T ss_dssp SSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCH-----HHH---HHTCCCSSCCEEEEECCCSSHH
T ss_pred CCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCH-----HHH---HhhcCCCCCCeEEEEeecCCHH
Confidence 46899999997 4 58999999999 999999999953311 000 1111 24678999998 89999
Q ss_pred HHHHHHHHHcC-CCcEEEEecCCCc-hh----hhc-----------------Cccc--cccc---CChHHHHHHHHHHhc
Q 013813 171 ILLNAARRVEP-YCDYVDINLGCPQ-RI----ARR-----------------GNYG--AFLM---DNLPLVKSLVEKLAL 222 (436)
Q Consensus 171 ~~~~AA~~v~~-g~D~IdLN~GCP~-~~----~~~-----------------~~~G--s~Ll---~~p~~v~eIv~av~~ 222 (436)
.+.+++++++. |+++|.|+++||+ .+ .+. +.++ +.++ .++.+..++++++++
T Consensus 261 ~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr~ 340 (511)
T 1kbi_A 261 ITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKK 340 (511)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHHHHHH
Confidence 99999988865 9999999999998 11 111 1111 1223 477777888999999
Q ss_pred ccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHHHhhC-------CCcEEEcc
Q 013813 223 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL-------RIPVLANG 293 (436)
Q Consensus 223 ~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~-------~iPVianG 293 (436)
.+++||+||.- .+ .+.|+.++++|+|+|+| ||++ +. ..++..|+.+.++++.+ ++|||++|
T Consensus 341 ~~~~PvivKgv--~~----~e~A~~a~~aGad~I~vs~hgG~--~~--d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~G 410 (511)
T 1kbi_A 341 KTKLPIVIKGV--QR----TEDVIKAAEIGVSGVVLSNHGGR--QL--DFSRAPIEVLAETMPILEQRNLKDKLEVFVDG 410 (511)
T ss_dssp HCSSCEEEEEE--CS----HHHHHHHHHTTCSEEEECCTTTT--SS--TTCCCHHHHHHHHHHHHHTTTCBTTBEEEEES
T ss_pred HhCCcEEEEeC--CC----HHHHHHHHHcCCCEEEEcCCCCc--cC--CCCCchHHHHHHHHHHHHhhccCCCcEEEEEC
Confidence 99999999932 12 45688899999999999 5554 22 22356789999998876 79999999
Q ss_pred CCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 294 NVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 294 GI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
||.+..|+.++|.. |||+|||||+++.
T Consensus 411 GI~~g~Dv~kaLal-GAdaV~iGr~~l~ 437 (511)
T 1kbi_A 411 GVRRGTDVLKALCL-GAKGVGLGRPFLY 437 (511)
T ss_dssp SCCSHHHHHHHHHH-TCSEEEECHHHHH
T ss_pred CCCCHHHHHHHHHc-CCCEEEECHHHHH
Confidence 99999999999995 9999999996663
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-20 Score=184.21 Aligned_cols=204 Identities=18% Similarity=0.145 Sum_probs=146.1
Q ss_pred CCcEEEccCCCCCcH------HHHHHHHHhCCCeEEeCcccchhhcc-ChhhhhhhhhccCCCCCEE-----EEecCCCH
Q 013813 102 RPKLIVAPMVDNSEL------PFRMLCRRYGAEAAYTPMLHSRIFTE-SEKYRNEEFATCKEDRPLF-----VQFCANDP 169 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~------~fR~l~~~~Ga~l~~Temisa~~l~~-~~~~~~~~~~~~~~e~pli-----vQL~g~d~ 169 (436)
+.|+++|||++.++. +|++.|+++|+..++++|.++ +.+ ......+ +.....+.|++ +|+++.++
T Consensus 58 ~~P~~iapm~g~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~--le~~~~~~~~q-l~~~~~d~pv~~~~~~~q~~~~~~ 134 (332)
T 1vcf_A 58 KAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL--LERPEALRSFR-VRKVAPKALLIANLGLAQLRRYGR 134 (332)
T ss_dssp SSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH--HHCTTTHHHHC-CTTTCSSSCEEEEEEGGGGGTCCH
T ss_pred CCceEEeccccCCcchhHHHHHHHHHHHHcCCCEEeCCchhc--ccCCCccceEE-eeccCCCceeecccChhhhhccCh
Confidence 579999999998864 999999999999999999875 322 1111112 23334578887 67788899
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEE-eccCCChhhHHHHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK-IRVFPNLQDTIKYAKML 248 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVK-iRlg~~~~d~~~~ak~l 248 (436)
+.+.++++.+. +|++.+|..+.+.... + |.. +.+.+.++++++++ +++||+|| +..|.+. +.++.+
T Consensus 135 ~~~~~a~~~~~--~~a~~i~~n~~~~~~~-~--~~~---~~~~~~~~i~~vr~-~~~Pv~vK~v~~g~~~----e~a~~~ 201 (332)
T 1vcf_A 135 DDLLRLVEMLE--ADALAFHVNPLQEAVQ-R--GDT---DFRGLVERLAELLP-LPFPVMVKEVGHGLSR----EAALAL 201 (332)
T ss_dssp HHHHHHHHHHT--CSEEEEECCHHHHHHT-T--SCC---CCTTHHHHHHHHCS-CSSCEEEECSSSCCCH----HHHHHH
T ss_pred HHHHHHHhhcC--CCceeeccchHHHHhc-C--CCc---cHHHHHHHHHHHHc-CCCCEEEEecCCCCCH----HHHHHH
Confidence 99999887663 5666666544332211 1 111 12236788999999 99999999 5444443 347889
Q ss_pred HHcCccEEEe--ccCc--------ccc------cCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 249 EDAGCSLLAV--HGRT--------RDE------KDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 249 e~aG~d~I~V--HgRt--------~~~------~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+++|+|+|+| ||++ +.+ .....+.+.|+.+.++++.+ ++|||++|||.+.+|+.++|.. |||
T Consensus 202 ~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~-GAd 280 (332)
T 1vcf_A 202 RDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALAL-GAD 280 (332)
T ss_dssp TTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHH-TCS
T ss_pred HHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHh-CCC
Confidence 9999999999 7664 211 00223456789999999988 8999999999999999999996 999
Q ss_pred eeeeehHHhhC
Q 013813 312 GVLSAESLLEN 322 (436)
Q Consensus 312 gVmIGRgal~n 322 (436)
+||+||+++..
T Consensus 281 ~V~igr~~l~~ 291 (332)
T 1vcf_A 281 LLAVARPLLRP 291 (332)
T ss_dssp EEEECGGGHHH
T ss_pred hHhhhHHHHHH
Confidence 99999987754
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-20 Score=187.85 Aligned_cols=232 Identities=14% Similarity=0.134 Sum_probs=159.3
Q ss_pred CCcEEEccCCC--------CC--cHHHHHHHHHh--CCCeEEeCcccch--h--hc-----cChhh----hhhhhhccCC
Q 013813 102 RPKLIVAPMVD--------NS--ELPFRMLCRRY--GAEAAYTPMLHSR--I--FT-----ESEKY----RNEEFATCKE 156 (436)
Q Consensus 102 ~~~i~lAPM~g--------vt--d~~fR~l~~~~--Ga~l~~Temisa~--~--l~-----~~~~~----~~~~~~~~~~ 156 (436)
+|+|++|||.. ++ |...+.+.++. |+++++||.+... . .. .+... +...-..+..
T Consensus 29 kNRiv~aPm~~~~a~~~g~v~~~d~~~~yy~~rA~GG~GLIite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~davH~~ 108 (400)
T 4gbu_A 29 LHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEK 108 (400)
T ss_dssp SSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEECSCEESSGGGCCCTTSCBSSSHHHHHHHHHHHHHHHHT
T ss_pred cCcCEeCCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEcCeEECccccCCCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 78999999974 22 44566666655 6899999985432 1 10 11111 1111134567
Q ss_pred CCCEEEEecCCC--------------------------------------------------HHHHHHHHHHH-cCCCcE
Q 013813 157 DRPLFVQFCAND--------------------------------------------------PEILLNAARRV-EPYCDY 185 (436)
Q Consensus 157 e~plivQL~g~d--------------------------------------------------~e~~~~AA~~v-~~g~D~ 185 (436)
+..+++||+... .++|++||+++ ++|||+
T Consensus 109 G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~AGFDg 188 (400)
T 4gbu_A 109 KSFVWVQLAVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 188 (400)
T ss_dssp TCEEEEEEECCGGGSCHHHHHHTTCCCEESCSSCCSCHHHHHHHHHTTCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CCceEEeeeecCcccCccccccCCCcccCccccccCCCCcccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCcCe
Confidence 889999996321 25799999776 569999
Q ss_pred EEEecC---------CCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCC------C------hhhHHH
Q 013813 186 VDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP------N------LQDTIK 243 (436)
Q Consensus 186 IdLN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~------~------~~d~~~ 243 (436)
||||.+ +|..|.|+|.||+++.++.+++.||+++|+++++ -||.||+.... + ..+..+
T Consensus 189 VEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~~~~~~~~~~~~~~~~~ 268 (400)
T 4gbu_A 189 VEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAY 268 (400)
T ss_dssp EEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTHHHHHHH
T ss_pred eeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCccchhhhHHHHHH
Confidence 999964 8999999999999999999999999999999983 58888875421 1 123445
Q ss_pred HHHHHHHcC-----ccEEEecc-Cccccc-CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 244 YAKMLEDAG-----CSLLAVHG-RTRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 244 ~ak~le~aG-----~d~I~VHg-Rt~~~~-~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+++.++..| .+.+.+.. +..... ....+.........+++.+++|||++|||.+..++.+.+...+||.|.+|
T Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~g 348 (400)
T 4gbu_A 269 VAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYG 348 (400)
T ss_dssp HHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCSCCSTHHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECC
T ss_pred HHHHHHHhhccCccccceeeecccCCCcccccccchhhhHHHHHHHHHhCCCEEEeCCCCChHHHHHHHHcCCCeEhHHH
Confidence 566665543 33444432 211110 00001111122345777889999999999987777777766799999999
Q ss_pred hHHhhCCccchhhhhhh
Q 013813 317 ESLLENPALFAGFRTAE 333 (436)
Q Consensus 317 Rgal~nP~lf~~i~~~~ 333 (436)
|+++.||+|.++++.+.
T Consensus 349 R~~iadPdl~~k~~~G~ 365 (400)
T 4gbu_A 349 RFFISNPDLVDRLEKGL 365 (400)
T ss_dssp HHHHHCTTHHHHHHHTC
T ss_pred HHHHHCcHHHHHHHcCC
Confidence 99999999999998754
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=166.55 Aligned_cols=192 Identities=16% Similarity=0.194 Sum_probs=143.6
Q ss_pred HHHhC-CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHH
Q 013813 97 WTKLG-RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLN 174 (436)
Q Consensus 97 ~~~lg-~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~ 174 (436)
.+.++ +.||++|||.++|+..|+..+.+.|+ +++.+.+++.+.+....+. ++. ..+.|+.|+++..+++. .+
T Consensus 20 ~~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~----i~~-~~~~p~gVnl~~~~~~~-~~ 93 (326)
T 3bo9_A 20 TDLLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISE----LRQ-KTDKPFGVNIILVSPWA-DD 93 (326)
T ss_dssp HHHHTCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHH----HHT-TCSSCEEEEEETTSTTH-HH
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHH----HHH-hcCCCEEEEEeccCCCH-HH
Confidence 34455 78999999999999999999999986 6677777665543221111 111 13579999999966543 33
Q ss_pred HHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 175 AAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 175 AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
.++ .++.|+|.|.+|+|||.. +++.+++ .+++|.+++. ..+.++.+.+.|+
T Consensus 94 ~~~~~~~~g~d~V~l~~g~p~~--------------------~~~~l~~-~g~~v~~~v~-------s~~~a~~a~~~Ga 145 (326)
T 3bo9_A 94 LVKVCIEEKVPVVTFGAGNPTK--------------------YIRELKE-NGTKVIPVVA-------SDSLARMVERAGA 145 (326)
T ss_dssp HHHHHHHTTCSEEEEESSCCHH--------------------HHHHHHH-TTCEEEEEES-------SHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEECCCCcHH--------------------HHHHHHH-cCCcEEEEcC-------CHHHHHHHHHcCC
Confidence 333 346799999999998842 2334443 3788888752 2345777889999
Q ss_pred cEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 254 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 254 d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
|+|.++++...+..+ ...+|+.+.++++.+++||+++|||.+.+++.+++.. |||+|++|++++..++.
T Consensus 146 D~i~v~g~~~GG~~G--~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~-GA~gV~vGs~~~~~~e~ 214 (326)
T 3bo9_A 146 DAVIAEGMESGGHIG--EVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFAL-GAEAVQMGTRFVASVES 214 (326)
T ss_dssp SCEEEECTTSSEECC--SSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHH-TCSEEEESHHHHTBSSC
T ss_pred CEEEEECCCCCccCC--CccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHh-CCCEEEechHHHcCccc
Confidence 999999876543222 1468999999999999999999999999999999985 99999999999998874
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.8e-18 Score=171.65 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=146.5
Q ss_pred CCcEEEccCCC--C----CcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 102 RPKLIVAPMVD--N----SELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 102 ~~~i~lAPM~g--v----td~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
+.|+++|||++ + ++.+|++.|+++|+..++++ +++..+.+ ... . .+.|..+||+....+...+.
T Consensus 72 ~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss-~s~~~le~----i~~----~-~~~~~~fQly~~~~~~~~~~ 141 (380)
T 1p4c_A 72 SMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLST-ASNMSIED----LAR----Q-CDGDLWFQLYVIHREIAQGM 141 (380)
T ss_dssp SSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECT-TCSSCHHH----HHH----H-CCSCEEEEECCSSHHHHHHH
T ss_pred CCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCc-cccCCHHH----HHh----c-cCCCeEEEEEechHHHHHHH
Confidence 56999999976 5 89999999999999999887 43333321 111 1 36789999986554444444
Q ss_pred HHHH-cCCCcEEEE--------------ecCCCch---hhh--------c--Ccccccc---cC---ChHHHHHHHHHHh
Q 013813 176 ARRV-EPYCDYVDI--------------NLGCPQR---IAR--------R--GNYGAFL---MD---NLPLVKSLVEKLA 221 (436)
Q Consensus 176 A~~v-~~g~D~IdL--------------N~GCP~~---~~~--------~--~~~Gs~L---l~---~p~~v~eIv~av~ 221 (436)
++.+ +.|+..+.| |.||+.+ ... + ...+.++ +. +|++..+++++++
T Consensus 142 i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~ 221 (380)
T 1p4c_A 142 VLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLR 221 (380)
T ss_dssp HHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHH
Confidence 5444 357877765 5688432 110 0 0112222 23 6777789999999
Q ss_pred cccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHH
Q 013813 222 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 299 (436)
Q Consensus 222 ~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~e 299 (436)
+.+++||.||.- .+.+.++.+.++|+|.|+| ||++. . ..+.++|+.+.++++.+++|||++|||.+.+
T Consensus 222 ~~~~~Pv~vkgv------~t~e~a~~a~~aGad~I~vs~~gg~~--~--d~~~~~~~~l~~v~~~~~~pVia~GGI~~~~ 291 (380)
T 1p4c_A 222 DLWPHKLLVKGL------LSAEDADRCIAEGADGVILSNHGGRQ--L--DCAISPMEVLAQSVAKTGKPVLIDSGFRRGS 291 (380)
T ss_dssp HHCCSEEEEEEE------CCHHHHHHHHHTTCSEEEECCGGGTS--C--TTCCCGGGTHHHHHHHHCSCEEECSSCCSHH
T ss_pred HhcCCCEEEEec------CcHHHHHHHHHcCCCEEEEcCCCCCc--C--CCCcCHHHHHHHHHHHcCCeEEEECCCCCHH
Confidence 999999999941 2345688899999999999 76642 1 2236789999999999999999999999999
Q ss_pred HHHHHHHhcCcceeeeehHHhh
Q 013813 300 DVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 300 da~~~l~~tGaDgVmIGRgal~ 321 (436)
|+.+++.. |||+||+||+++.
T Consensus 292 dv~kal~~-GAdaV~iGr~~l~ 312 (380)
T 1p4c_A 292 DIVKALAL-GAEAVLLGRATLY 312 (380)
T ss_dssp HHHHHHHT-TCSCEEESHHHHH
T ss_pred HHHHHHHh-CCcHhhehHHHHH
Confidence 99999985 9999999999975
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=163.51 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=139.8
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCccc-chhhccChhhhhhhhhccCCCCCEEEEecCC----CHHHHHHH
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLH-SRIFTESEKYRNEEFATCKEDRPLFVQFCAN----DPEILLNA 175 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temis-a~~l~~~~~~~~~~~~~~~~e~plivQL~g~----d~e~~~~A 175 (436)
+.||++|||.|+|+..++..+.+.|+ +++.+++.+ .+.+....+.... ..+.|+.|+++.+ +++ +.+.
T Consensus 15 ~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~-----~~~~p~~v~l~v~~~~~~~~-~~~~ 88 (328)
T 2gjl_A 15 EHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRE-----LTDRPFGVNLTLLPTQKPVP-YAEY 88 (328)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHH-----HCSSCCEEEEEECCCSSCCC-HHHH
T ss_pred CCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHH-----hcCCCeEEEEeccccccCcc-HHHH
Confidence 67999999999999999999999986 677777654 3333211111111 1257899999997 333 4444
Q ss_pred HHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCcc
Q 013813 176 ARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 176 A~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d 254 (436)
++. ++.|+|+|.+|+|||. ++++.+++. ++++.+++. +.+.++.+.+.|+|
T Consensus 89 ~~~~~~~g~d~V~~~~g~p~--------------------~~~~~l~~~-gi~vi~~v~-------t~~~a~~~~~~GaD 140 (328)
T 2gjl_A 89 RAAIIEAGIRVVETAGNDPG--------------------EHIAEFRRH-GVKVIHKCT-------AVRHALKAERLGVD 140 (328)
T ss_dssp HHHHHHTTCCEEEEEESCCH--------------------HHHHHHHHT-TCEEEEEES-------SHHHHHHHHHTTCS
T ss_pred HHHHHhcCCCEEEEcCCCcH--------------------HHHHHHHHc-CCCEEeeCC-------CHHHHHHHHHcCCC
Confidence 443 4569999999998872 234555544 788887752 13446778899999
Q ss_pred EEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 255 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 255 ~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+|.++|++..+..+.....+|+.++++++.+++||+++|||.+.+++.+++.. |||+|++||+++..+.
T Consensus 141 ~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~-GAdgV~vGs~~~~~~e 209 (328)
T 2gjl_A 141 AVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALAL-GADAINMGTRFLATRE 209 (328)
T ss_dssp EEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHH-TCSEEEESHHHHTSSS
T ss_pred EEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc-CCCEEEECHHHHcCcc
Confidence 99999876542212112368999999999999999999999999999999985 9999999999999998
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=162.52 Aligned_cols=190 Identities=15% Similarity=0.165 Sum_probs=139.3
Q ss_pred EEccCCCCCcHHHHHHHH---HhCCCe--EEeCcccc-hhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHH
Q 013813 106 IVAPMVDNSELPFRMLCR---RYGAEA--AYTPMLHS-RIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRV 179 (436)
Q Consensus 106 ~lAPM~gvtd~~fR~l~~---~~Ga~l--~~Temisa-~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v 179 (436)
+|.|+ .|+.+||.+|+ +||++. ++++|+.. +..... . .... -.+.|+.+|+.++.+.+. .+.+
T Consensus 12 ~l~p~--~t~~~i~~l~~~a~~~g~~~v~v~~~~v~~~~~~l~~---v-~v~~--v~~~P~g~~~~~~k~~~~---~~A~ 80 (225)
T 1mzh_A 12 ALKPH--LSEKEIEEFVLKSEELGIYAVCVNPYHVKLASSIAKK---V-KVCC--VIGFPLGLNKTSVKVKEA---VEAV 80 (225)
T ss_dssp ECCTT--CCHHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHCSS---S-EEEE--EESTTTCCSCHHHHHHHH---HHHH
T ss_pred ccCCC--CCHHHHHHHHHHHHHhCCeEEEECHHHHHHHHHHhcC---C-ceee--EecCCCCccchhhhHHHH---HHHH
Confidence 46887 68999999999 789987 67788764 332221 1 1011 114566667666554443 3345
Q ss_pred cCCCcEEE--EecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe---ccCCChhhHHHHHHHHHHcCcc
Q 013813 180 EPYCDYVD--INLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI---RVFPNLQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 180 ~~g~D~Id--LN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi---Rlg~~~~d~~~~ak~le~aG~d 254 (436)
+.|+|+|| +|+|| .+.+ +++.+.+.++++++.++ |+.+|+ +.+++.++..++++.++++|+|
T Consensus 81 ~~Gad~Id~viN~g~----~~~~--------~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad 147 (225)
T 1mzh_A 81 RDGAQELDIVWNLSA----FKSE--------KYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGAD 147 (225)
T ss_dssp HTTCSEEEEECCHHH----HHTT--------CHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCS
T ss_pred HcCCCEEEEEecHHH----HhcC--------ChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 68999999 79998 2222 34677888999999888 999999 7777878889999999999999
Q ss_pred EEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 255 LLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 255 ~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+|.. +| +. +.+.++|+.++.+++.+ ++||+++|||+|++|+.++++. |||.|.++++ .++|++++
T Consensus 148 ~I~t--st--g~--~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~a-GA~~iG~s~~----~~i~~~~~ 214 (225)
T 1mzh_A 148 FIKT--ST--GF--APRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEA-GADRIGTSSG----ISIAEEFL 214 (225)
T ss_dssp EEEC--CC--SC--SSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHT-TCSEEEESCH----HHHHHHHH
T ss_pred EEEE--CC--CC--CCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHh-CchHHHHccH----HHHHHHHH
Confidence 9922 22 21 23468999999999987 7999999999999999999985 9997766665 24555443
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=168.66 Aligned_cols=206 Identities=15% Similarity=0.159 Sum_probs=144.0
Q ss_pred CCcEEEccCCCCCcHHH------HHHHHHhCCCeEEeCcccc--hhhccChhhhhhhhhccCCCCCEEEEecC------C
Q 013813 102 RPKLIVAPMVDNSELPF------RMLCRRYGAEAAYTPMLHS--RIFTESEKYRNEEFATCKEDRPLFVQFCA------N 167 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~f------R~l~~~~Ga~l~~Temisa--~~l~~~~~~~~~~~~~~~~e~plivQL~g------~ 167 (436)
+.|+++|||.|.|+.++ +.+|+++|..+...||..+ +.-... .+ ..++...++.|++.++.+ .
T Consensus 59 ~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~-s~--~~vr~~ap~~~~~anlg~~ql~~~~ 135 (368)
T 3vkj_A 59 SVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARE-SF--AIVRKVAPTIPIIANLGMPQLVKGY 135 (368)
T ss_dssp SSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSH-HH--HHHHHHCSSSCEEEEEEGGGGGTTC
T ss_pred cCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHh-hH--HHHHHhCcCcceecCcCeeecCCCC
Confidence 66999999999999885 9999999999999999654 111111 11 111212356777755544 7
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChH-HHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 168 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP-LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 168 d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~-~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
+++.+.++++.+++++..|+||.+ ..+... .|. .+.. ...++++++++.+++||.||. +|+.. ..+.|+
T Consensus 136 ~~~~~~~av~~~~a~al~Ihln~~---~~~~~p-~g~---~~~~~~~~~~i~~i~~~~~vPVivK~-vG~g~--s~~~A~ 205 (368)
T 3vkj_A 136 GLKEFQDAIQMIEADAIAVHLNPA---QEVFQP-EGE---PEYQIYALEKLRDISKELSVPIIVKE-SGNGI--SMETAK 205 (368)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCHH---HHHHSS-SCC---CBCBTHHHHHHHHHHTTCSSCEEEEC-SSSCC--CHHHHH
T ss_pred CHHHHHHHHHHhcCCCeEEEecch---hhhhCC-CCC---chhhHHHHHHHHHHHHHcCCCEEEEe-CCCCC--CHHHHH
Confidence 899999999888767777777743 222211 111 1112 367788999999999999996 54432 245688
Q ss_pred HHHHcCccEEEe--ccCc--------ccccC------CCC-----CccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHH
Q 013813 247 MLEDAGCSLLAV--HGRT--------RDEKD------GKK-----FRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 247 ~le~aG~d~I~V--HgRt--------~~~~~------~~~-----g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~ 304 (436)
.++++|+|+|+| ||+| +.... .+. +.+....+.++++.+ ++|||++|||.+..|+.++
T Consensus 206 ~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~ka 285 (368)
T 3vkj_A 206 LLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKA 285 (368)
T ss_dssp HHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHH
Confidence 999999999999 5554 11000 000 122236677888887 5999999999999999999
Q ss_pred HHhcCcceeeeehHHhh
Q 013813 305 LEETGCEGVLSAESLLE 321 (436)
Q Consensus 305 l~~tGaDgVmIGRgal~ 321 (436)
+.. |||+||+||+++.
T Consensus 286 l~l-GA~~v~ig~~~l~ 301 (368)
T 3vkj_A 286 IAL-GADIAGMALPVLK 301 (368)
T ss_dssp HHH-TCSEEEECHHHHH
T ss_pred HHc-CCCEEEEcHHHHH
Confidence 996 9999999997654
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=161.46 Aligned_cols=193 Identities=17% Similarity=0.188 Sum_probs=142.1
Q ss_pred CCcEEEccCCC-CCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHH---------
Q 013813 102 RPKLIVAPMVD-NSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPE--------- 170 (436)
Q Consensus 102 ~~~i~lAPM~g-vtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e--------- 170 (436)
+.||++|||++ +|+..|+..+.+.|+ +++.++|++.+.+.......... .+.|+.|||+.+.+.
T Consensus 10 ~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~-----~~~p~gVnl~~~~~~~~~~~~~~~ 84 (369)
T 3bw2_A 10 PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGL-----TGRPFGVNVFMPQPELAESGAVEV 84 (369)
T ss_dssp SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHH-----CCSCEEEEEECCCCCC---CHHHH
T ss_pred cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHh-----CCCCeEEEEecCCCCcccHHHHHH
Confidence 67999999995 999999999999987 77888888876654332222221 236999999987542
Q ss_pred -------------------------HHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc
Q 013813 171 -------------------------ILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 224 (436)
Q Consensus 171 -------------------------~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~ 224 (436)
.+.+.++.+ +.++|.|.+|+|||. .++++.+++ .
T Consensus 85 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~-------------------~~~i~~~~~-~ 144 (369)
T 3bw2_A 85 YAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPD-------------------REVIARLRR-A 144 (369)
T ss_dssp HHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCC-------------------HHHHHHHHH-T
T ss_pred HHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCc-------------------HHHHHHHHH-C
Confidence 123334433 568999999999984 123444444 3
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCC----CCc----cC-HHHHHHHHhhCCCcEEEccCC
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK----KFR----AD-WNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~----~g~----ad-~~~i~~ik~~~~iPVianGGI 295 (436)
+++|.+++. + .+.++.+++.|+|+|.++++...+..+. ..+ .. |+.++++++.+++||++.|||
T Consensus 145 g~~v~~~v~---t----~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI 217 (369)
T 3bw2_A 145 GTLTLVTAT---T----PEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGI 217 (369)
T ss_dssp TCEEEEEES---S----HHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSC
T ss_pred CCeEEEECC---C----HHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCC
Confidence 788888752 2 3347788899999999987653211110 000 23 899999999899999999999
Q ss_pred CCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 296 RHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
.+++++.++++. |||+|++||+++.+|+...
T Consensus 218 ~~~~~~~~~l~~-GAd~V~vGs~~~~~~e~~~ 248 (369)
T 3bw2_A 218 MRGGQIAAVLAA-GADAAQLGTAFLATDESGA 248 (369)
T ss_dssp CSHHHHHHHHHT-TCSEEEESHHHHTSTTCCC
T ss_pred CCHHHHHHHHHc-CCCEEEEChHHhCCcccCc
Confidence 999999999985 9999999999999998753
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-17 Score=163.26 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=139.9
Q ss_pred CCcEEEccCCCCCcHHHHH-HHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRM-LCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~-l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
+.||++|||.++|+..|+. +++..|.++++++|.... ...... .+ ..+.|+.+|+ |.+++.+..+..+++
T Consensus 46 ~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~~-----~~~i~~-~~--~~g~~v~v~~-g~~~~~~~~a~~~~~ 116 (336)
T 1ypf_A 46 KLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKR-----ISFIRD-MQ--SRGLIASISV-GVKEDEYEFVQQLAA 116 (336)
T ss_dssp SSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGGH-----HHHHHH-HH--HTTCCCEEEE-CCSHHHHHHHHHHHH
T ss_pred cCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHHH-----HHHHHH-HH--hcCCeEEEeC-CCCHHHHHHHHHHHh
Confidence 6799999999999999965 566667788888765321 111111 11 1345899995 778888877666677
Q ss_pred CC--CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 181 PY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 181 ~g--~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
.+ ++.|++|++. | ++....++++++++.++.|+.+|-.. ...+.|+.+.++|+|+|++
T Consensus 117 ~g~~~~~i~i~~~~----------G-----~~~~~~~~i~~lr~~~~~~~vi~G~v-----~s~e~A~~a~~aGad~Ivv 176 (336)
T 1ypf_A 117 EHLTPEYITIDIAH----------G-----HSNAVINMIQHIKKHLPESFVIAGNV-----GTPEAVRELENAGADATKV 176 (336)
T ss_dssp TTCCCSEEEEECSS----------C-----CSHHHHHHHHHHHHHCTTSEEEEEEE-----CSHHHHHHHHHHTCSEEEE
T ss_pred cCCCCCEEEEECCC----------C-----CcHHHHHHHHHHHHhCCCCEEEECCc-----CCHHHHHHHHHcCCCEEEE
Confidence 77 9999999742 2 57788899999999886444444111 1235788999999999999
Q ss_pred --ccCccc-cc-CCCCCcc--CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 259 --HGRTRD-EK-DGKKFRA--DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 259 --HgRt~~-~~-~~~~g~a--d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
|+++.. .. ..+.+.+ .++.+.++++.+++|||++|||.+..|+.+++.. |||+||+||+++.-
T Consensus 177 s~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalal-GAdaV~iGr~~l~t 245 (336)
T 1ypf_A 177 GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRF-GATMVMIGSLFAGH 245 (336)
T ss_dssp CSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHT-TCSEEEESGGGTTC
T ss_pred ecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc-CCCEEEeChhhhcc
Confidence 664321 00 0111223 5888999999999999999999999999999986 99999999999964
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=155.21 Aligned_cols=182 Identities=14% Similarity=0.145 Sum_probs=134.0
Q ss_pred HHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhc
Q 013813 120 MLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARR 199 (436)
Q Consensus 120 ~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~ 199 (436)
+...+.|++.++.-++++ .+.+....... ..++-+|++|.-.. . ++.+++ .|+|.|-
T Consensus 45 ~~~~~~Ga~~l~vvDL~~----~n~~~i~~i~~----~~~~pv~vgGGir~-~-~~~~~l-~Ga~~Vi------------ 101 (260)
T 2agk_A 45 KLYKDRDVQGCHVIKLGP----NNDDAAREALQ----ESPQFLQVGGGIND-T-NCLEWL-KWASKVI------------ 101 (260)
T ss_dssp HHHHHTTCTTCEEEEESS----SCHHHHHHHHH----HSTTTSEEESSCCT-T-THHHHT-TTCSCEE------------
T ss_pred HHHHHcCCCEEEEEeCCC----CCHHHHHHHHh----cCCceEEEeCCCCH-H-HHHHHh-cCCCEEE------------
Confidence 455666998888777765 22222222111 23455778887763 4 777888 9999775
Q ss_pred CcccccccCC-----hHHHHHHHHHHh-cccCccEEEEec---------cCCCh---hhHH-HHHHHHHHcCccEEEecc
Q 013813 200 GNYGAFLMDN-----LPLVKSLVEKLA-LNLNVPVSCKIR---------VFPNL---QDTI-KYAKMLEDAGCSLLAVHG 260 (436)
Q Consensus 200 ~~~Gs~Ll~~-----p~~v~eIv~av~-~~~~iPVsVKiR---------lg~~~---~d~~-~~ak~le~aG~d~I~VHg 260 (436)
.|++++++ |+++.++++.+. +.+-+++.+|++ .||.. .++. ++++.+++. ++.|++|+
T Consensus 102 --igs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t~ 178 (260)
T 2agk_A 102 --VTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIHA 178 (260)
T ss_dssp --ECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEEC
T ss_pred --ECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEEe
Confidence 46778888 999999999997 554455555533 14532 2456 899999999 99999999
Q ss_pred CcccccCCCCCccCHHHHHHHHhhC----CCcEEEccCCCCHHHHHHHHHhc-CcceeeeehHH--hhCC-ccchhhh
Q 013813 261 RTRDEKDGKKFRADWNAIKAVKNAL----RIPVLANGNVRHMEDVQKCLEET-GCEGVLSAESL--LENP-ALFAGFR 330 (436)
Q Consensus 261 Rt~~~~~~~~g~ad~~~i~~ik~~~----~iPVianGGI~s~eda~~~l~~t-GaDgVmIGRga--l~nP-~lf~~i~ 330 (436)
+++++++. | +||+.++++++.+ ++|||++|||.|++|++++++.+ ||++||+||++ +.++ |.|.++.
T Consensus 179 i~~dG~~~--G-~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~ 253 (260)
T 2agk_A 179 ADVEGLCG--G-IDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCC 253 (260)
T ss_dssp -------C--C-CCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHH
T ss_pred eccccCcC--C-CCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHH
Confidence 99987643 3 5999999999999 99999999999999999999987 99999999997 9999 9998765
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-16 Score=155.48 Aligned_cols=205 Identities=16% Similarity=0.183 Sum_probs=124.2
Q ss_pred CCcEEEccCCCCCcHH------HHHHHHHhCCCeEEeCcccchhhccChhh-hhhhhhccCCCCCEEEEecCCCH-HHHH
Q 013813 102 RPKLIVAPMVDNSELP------FRMLCRRYGAEAAYTPMLHSRIFTESEKY-RNEEFATCKEDRPLFVQFCANDP-EILL 173 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~------fR~l~~~~Ga~l~~Temisa~~l~~~~~~-~~~~~~~~~~e~plivQL~g~d~-e~~~ 173 (436)
+.|+++|||.+.++.+ |++.|+++|......+|..+ + ++... .....+. .++.+++.+|.+..+ ++..
T Consensus 86 ~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~--l-e~~~~~~~~v~r~-~P~~~~ianig~~~~~e~~~ 161 (365)
T 3sr7_A 86 DFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA--L-KNPDDTSYQVKKS-RPHLLLATNIGLDKPYQAGL 161 (365)
T ss_dssp SSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC---------------------------CCEEEEEETTSCHHHHH
T ss_pred cCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc--c-cCccccceEehhh-CCCCcEEEEeCCCCCHHHHH
Confidence 6799999999999866 99999999999988888642 1 11111 1111122 257899999986543 3333
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
++++.+ ++|++.||+...+..+... | -.+.+-..+.|+++++.+++||.||. +|.. ...+.|+.+.++|+
T Consensus 162 ~~ve~~--~adal~ihln~~qe~~~p~--G---d~~~~~~~~~I~~l~~~~~~PVivK~-vg~g--~s~e~A~~l~~aGa 231 (365)
T 3sr7_A 162 QAVRDL--QPLFLQVHINLMQELLMPE--G---EREFRSWKKHLSDYAKKLQLPFILKE-VGFG--MDVKTIQTAIDLGV 231 (365)
T ss_dssp HHHHHH--CCSCEEEEECHHHHHTSSS--S---CCCCHHHHHHHHHHHHHCCSCEEEEE-CSSC--CCHHHHHHHHHHTC
T ss_pred HHHHhc--CCCEEEEeccccccccCCC--C---CCcHHHHHHHHHHHHHhhCCCEEEEE-CCCC--CCHHHHHHHHHcCC
Confidence 433333 6677766655333222222 1 12344567889999999999999994 4332 22356888999999
Q ss_pred cEEEeccCccccc-----C---CCC-----CccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 254 SLLAVHGRTRDEK-----D---GKK-----FRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 254 d~I~VHgRt~~~~-----~---~~~-----g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
|+|+|+|+..... . .+. +.+....+..++... ++|||++|||.+..|+.++|.. |||+||+||++
T Consensus 232 d~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaLal-GAdaV~ig~~~ 310 (365)
T 3sr7_A 232 KTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVL-GAKAVGLSRTM 310 (365)
T ss_dssp CEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHHHH-TCSEEEESHHH
T ss_pred CEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc-CCCEEEECHHH
Confidence 9999976522110 0 001 122235566654432 7999999999999999999985 99999999976
Q ss_pred hh
Q 013813 320 LE 321 (436)
Q Consensus 320 l~ 321 (436)
+.
T Consensus 311 l~ 312 (365)
T 3sr7_A 311 LE 312 (365)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=165.64 Aligned_cols=207 Identities=15% Similarity=0.122 Sum_probs=143.4
Q ss_pred HHHHh---CCC-eEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHH----------HHHHHHHHHcCCCcEE
Q 013813 121 LCRRY---GAE-AAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPE----------ILLNAARRVEPYCDYV 186 (436)
Q Consensus 121 l~~~~---Ga~-l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e----------~~~~AA~~v~~g~D~I 186 (436)
+++.| |++ +.+.++-.++....+.......++.-....++-+|++|.-.+ .+..+.++++.|+|.|
T Consensus 285 ~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V 364 (555)
T 1jvn_A 285 LAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKV 364 (555)
T ss_dssp HHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEE
Confidence 45545 885 567776544321111100111122222335667888887643 2344556678899999
Q ss_pred EEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEEEEe--------------------------------c
Q 013813 187 DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKI--------------------------------R 233 (436)
Q Consensus 187 dLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVsVKi--------------------------------R 233 (436)
.||.+| ..+..+-..++.++.+|+++.++.+...+ .+-+-+.+|. .
T Consensus 365 ~igt~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 443 (555)
T 1jvn_A 365 SIGTDA-VYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTI 443 (555)
T ss_dssp EECHHH-HHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEE
T ss_pred EECCHH-hhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCcceeEEEEE
Confidence 999998 33222222244568899999999998753 2212222221 1
Q ss_pred cCCCh---hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 234 VFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 234 lg~~~---~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
.||.. .++.++++.++++|++.|++|++++++... .+||+.++++++.+++|||++|||.|++|+.++++.+||
T Consensus 444 ~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~~---G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~ 520 (555)
T 1jvn_A 444 KGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNS---GYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRA 520 (555)
T ss_dssp TTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCS---CCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCC
T ss_pred ecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCC---CCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCC
Confidence 13432 357899999999999999999999987643 369999999999999999999999999999999986799
Q ss_pred ceeeeehHHhhCCccchhhhh
Q 013813 311 EGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 311 DgVmIGRgal~nP~lf~~i~~ 331 (436)
|+||+||+++.++|.|.+++.
T Consensus 521 ~gvivg~a~~~~~~~~~e~~~ 541 (555)
T 1jvn_A 521 DACLGAGMFHRGEFTVNDVKE 541 (555)
T ss_dssp SEEEESHHHHTTSCCHHHHHH
T ss_pred hHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999999998764
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=154.80 Aligned_cols=201 Identities=15% Similarity=0.133 Sum_probs=137.1
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhh-hhh-------------------------------
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKY-RNE------------------------------- 149 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~-~~~------------------------------- 149 (436)
+.||++|||.++++..+...+.+.|+-.+..-+++.+.+...... ...
T Consensus 42 ~~Pii~Apm~~~~~~ela~a~a~aGglg~i~~~~s~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 121 (404)
T 1eep_A 42 NIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDA 121 (404)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHHTCC------------------------------
T ss_pred CCCEEeCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHhhccCCCceeccccccccccccccCCCCCHHHH
Confidence 669999999999999999988888763333333333221111000 000
Q ss_pred --------hhh----ccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHH
Q 013813 150 --------EFA----TCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217 (436)
Q Consensus 150 --------~~~----~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv 217 (436)
.+. ......++++++... ++....+...++.|+|.|+||+++ | +++.+.+++
T Consensus 122 ~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~-~~~~~~a~~~~~~G~d~i~i~~~~----------g-----~~~~~~e~i 185 (404)
T 1eep_A 122 YKNAEHKEDFPNACKDLNNKLRVGAAVSID-IDTIERVEELVKAHVDILVIDSAH----------G-----HSTRIIELI 185 (404)
T ss_dssp --------CCTTCCBCTTSCBCCEEEECSC-TTHHHHHHHHHHTTCSEEEECCSC----------C-----SSHHHHHHH
T ss_pred HHHHHHhhhcchhhhhcccCceEEEEeCCC-hhHHHHHHHHHHCCCCEEEEeCCC----------C-----ChHHHHHHH
Confidence 000 000122467888653 344555555667899999999654 1 468889999
Q ss_pred HHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEec------cCcccccCCCCCccCHHHHHHHHh---hCCC
Q 013813 218 EKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKN---ALRI 287 (436)
Q Consensus 218 ~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH------gRt~~~~~~~~g~ad~~~i~~ik~---~~~i 287 (436)
+++++.+ ++||.++.- . ..+.++.++++|+|+|+|. .++... . ..+..+++.+..+++ .+++
T Consensus 186 ~~ir~~~~~~pviv~~v--~----~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~-~-~~g~p~~~~l~~v~~~~~~~~i 257 (404)
T 1eep_A 186 KKIKTKYPNLDLIAGNI--V----TKEAALDLISVGADCLKVGIGPGSICTTRIV-A-GVGVPQITAICDVYEACNNTNI 257 (404)
T ss_dssp HHHHHHCTTCEEEEEEE--C----SHHHHHHHHTTTCSEEEECSSCSTTSHHHHH-H-CCCCCHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHCCCCeEEEcCC--C----cHHHHHHHHhcCCCEEEECCCCCcCcCcccc-C-CCCcchHHHHHHHHHHHhhcCc
Confidence 9999988 899998521 1 2456888999999999992 111110 1 112346777777665 4689
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
|||++|||.+.+|+.+++.. |||+|++||+++..|+...
T Consensus 258 pVia~GGI~~~~d~~~ala~-GAd~V~iG~~~l~~~e~~~ 296 (404)
T 1eep_A 258 CIIADGGIRFSGDVVKAIAA-GADSVMIGNLFAGTKESPS 296 (404)
T ss_dssp EEEEESCCCSHHHHHHHHHH-TCSEEEECHHHHTBTTSSS
T ss_pred eEEEECCCCCHHHHHHHHHc-CCCHHhhCHHHhcCCCCCc
Confidence 99999999999999999996 9999999999999988754
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=138.96 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=123.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc----Ccc-----
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL----NVP----- 227 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~----~iP----- 227 (436)
+.|+++-.+-.+++++. ..++.|+|.|-++ +.++.+|+.+.++++.+...+ +..
T Consensus 74 ~ipv~v~ggi~~~~~~~---~~l~~Gad~V~lg--------------~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~ 136 (244)
T 2y88_A 74 DVQVELSGGIRDDESLA---AALATGCARVNVG--------------TAALENPQWCARVIGEHGDQVAVGLDVQIIDGE 136 (244)
T ss_dssp SSEEEEESSCCSHHHHH---HHHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTE
T ss_pred CCcEEEECCCCCHHHHH---HHHHcCCCEEEEC--------------chHhhChHHHHHHHHHcCCCEEEEEeccccCCC
Confidence 67888887778888633 3345789998764 556778999999999876443 222
Q ss_pred EEEEeccCCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH
Q 013813 228 VSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 228 VsVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l 305 (436)
.+||+| +|. ..+..++++.+++.|++.|.+|+|+..+... ..+|+.++++++.+++||+++|||.+++|+.+++
T Consensus 137 ~~v~~~-g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~---g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~ 212 (244)
T 2y88_A 137 HRLRGR-GWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLG---GPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIA 212 (244)
T ss_dssp EEEEEG-GGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTS---CCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHH
T ss_pred CEEEEC-CccCCCCCHHHHHHHHHhCCCCEEEEEecCCccccC---CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHH
Confidence 357777 553 1267888999999999999999999875432 3599999999999999999999999999999999
Q ss_pred Hhc--CcceeeeehHHhhCCccchhhh
Q 013813 306 EET--GCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 306 ~~t--GaDgVmIGRgal~nP~lf~~i~ 330 (436)
+.+ |||+||+||+++.+|+.|.++.
T Consensus 213 ~~~~~Gad~v~vG~al~~~~~~~~~~~ 239 (244)
T 2y88_A 213 TLTHRGVEGAIVGKALYARRFTLPQAL 239 (244)
T ss_dssp TTGGGTEEEEEECHHHHTTSSCHHHHH
T ss_pred hhccCCCCEEEEcHHHHCCCcCHHHHH
Confidence 866 9999999999999999998765
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-15 Score=149.64 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=157.0
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
..|+++||+.... +...-+.|.+.|.-.+.+-+-+. .+ +. +.....+.|..+||.-. |.+...+
T Consensus 69 ~~P~~iaP~g~~~l~~~~ge~~~araa~~~gi~~~lSt~ss~-s~----e~----v~~~~~~~~~wfQlY~~~d~~~~~~ 139 (352)
T 3sgz_A 69 SAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASY-SL----ED----IVAAAPEGFRWFQLYMKSDWDFNKQ 139 (352)
T ss_dssp SSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCEEEECTTCSS-CH----HH----HHHHSTTCEEEEECCCCSCHHHHHH
T ss_pred CCcceechHHHHHhcCccHHHHHHHHHHHcCCCeEeCCCCCC-CH----HH----HHHhccCccceeccccCCCHHHHHH
Confidence 4689999987644 45556667777765554433221 11 11 11113457899999765 4555555
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhh---cCcc-------------------ccc---ccCChHHHHHHHHHHhcccCcc
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IAR---RGNY-------------------GAF---LMDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~---~~~~-------------------Gs~---Ll~~p~~v~eIv~av~~~~~iP 227 (436)
-.++++ .||.+|=+....|.. +.. +.++ ++. -.-++.+.-+.++++++.+++|
T Consensus 140 l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~~P 219 (352)
T 3sgz_A 140 MVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLP 219 (352)
T ss_dssp HHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHHHHHHHCCSC
T ss_pred HHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHHHHHHhcCCC
Confidence 557765 599999998887762 111 1001 111 1235666778899999999999
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l 305 (436)
|.||... + .+.|+.+.++|+|+|+|++....+. ..+++.++.+.++++.+ ++|||++|||.+..|+.++|
T Consensus 220 vivK~v~--~----~e~A~~a~~~GaD~I~vsn~GG~~~--d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaL 291 (352)
T 3sgz_A 220 IILKGIL--T----KEDAELAMKHNVQGIVVSNHGGRQL--DEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKAL 291 (352)
T ss_dssp EEEEEEC--S----HHHHHHHHHTTCSEEEECCGGGTSS--CSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH
T ss_pred EEEEecC--c----HHHHHHHHHcCCCEEEEeCCCCCcc--CCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHH
Confidence 9999763 2 3558889999999999955433222 23467899999999887 79999999999999999999
Q ss_pred HhcCcceeeeehHHhhCCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHH-HHhCCC-hhHHHHHHHHH
Q 013813 306 EETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKL-CEKYPV-PWRMIRSHVHK 376 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~~~~~-~~~~~R~hl~~ 376 (436)
.. |||+|||||+++..... .+ + ....+.++.+.++++. +...+. .+..+++++.|
T Consensus 292 al-GA~aV~iGr~~l~~l~~-----~G------~----~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~ 348 (352)
T 3sgz_A 292 AL-GARCIFLGRPILWGLAC-----KG------E----DGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ 348 (352)
T ss_dssp HT-TCSEEEESHHHHHHHHH-----HH------H----HHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBS
T ss_pred Hc-CCCEEEECHHHHHHHHh-----cC------c----HHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhcch
Confidence 86 99999999987643321 11 1 1123445666666653 333332 24555665443
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-14 Score=142.88 Aligned_cols=193 Identities=18% Similarity=0.130 Sum_probs=133.5
Q ss_pred CCcEEEccCCCCCcHHHHHH-HHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRML-CRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l-~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
+.||+.|||.++|+..+... ++..|.+++... .+...+... . ..++. ....|+.++++.++ ...+..+++
T Consensus 45 ~~Pii~apM~~vt~~~lA~avA~~GGlgii~~~-~s~e~~~~~---I-~~vk~-~~~~pvga~ig~~~---~e~a~~l~e 115 (361)
T 3khj_A 45 KIPLISSAMDTVTEHLMAVGMARLGGIGIIHKN-MDMESQVNE---V-LKVKN-SGGLRVGAAIGVNE---IERAKLLVE 115 (361)
T ss_dssp SSSEEECSSTTTCSHHHHHHHHHTTCEEEECSS-SCHHHHHHH---H-HHHHH-TTCCCCEEEECTTC---HHHHHHHHH
T ss_pred CCCEEeecCCCCCcHHHHHHHHHcCCCeEEecC-CCHHHHHHH---H-HHHHh-ccCceEEEEeCCCH---HHHHHHHHH
Confidence 55899999999999999884 444444555432 222211110 0 11111 24578999998776 333334567
Q ss_pred CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc
Q 013813 181 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG 260 (436)
Q Consensus 181 ~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg 260 (436)
.|+|.|.||.+. | +++.+.+.++++++.+++||.++.- .+.+.++.+.++|+|+|.|..
T Consensus 116 aGad~I~ld~a~----------G-----~~~~~~~~i~~i~~~~~~~Vivg~v------~t~e~A~~l~~aGaD~I~VG~ 174 (361)
T 3khj_A 116 AGVDVIVLDSAH----------G-----HSLNIIRTLKEIKSKMNIDVIVGNV------VTEEATKELIENGADGIKVGI 174 (361)
T ss_dssp TTCSEEEECCSC----------C-----SBHHHHHHHHHHHHHCCCEEEEEEE------CSHHHHHHHHHTTCSEEEECS
T ss_pred cCcCeEEEeCCC----------C-----CcHHHHHHHHHHHHhcCCcEEEccC------CCHHHHHHHHHcCcCEEEEec
Confidence 899999999642 1 4577788889888888999998632 224557889999999999831
Q ss_pred ------CcccccCCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 261 ------RTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 261 ------Rt~~~~~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
.++.. ...+.+++..+.++++ .+++|||+.|||.+.+|+.+++.. |||+||+|++++..++...
T Consensus 175 ~~Gs~~~tr~~--~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~-GAd~V~vGs~~~~t~Esp~ 247 (361)
T 3khj_A 175 GPGSICTTRIV--AGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAV-GASSVMIGSILAGTEESPG 247 (361)
T ss_dssp SCCTTCCHHHH--TCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHH-TCSEEEESTTTTTBTTSSC
T ss_pred CCCcCCCcccc--cCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHc-CCCEEEEChhhhcCCcCCc
Confidence 11110 1122456777777754 468999999999999999999997 9999999999999887443
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=131.39 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=117.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEE---e
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK---I 232 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVK---i 232 (436)
.+.|+++-.+-.+++++. ..++.|+|.|-++ +.++.+|+.+.++++.+...+.+.+.++ +
T Consensus 74 ~~ipv~v~ggI~~~~~~~---~~l~~Gad~V~lg--------------~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v 136 (244)
T 1vzw_A 74 MDIKVELSGGIRDDDTLA---AALATGCTRVNLG--------------TAALETPEWVAKVIAEHGDKIAVGLDVRGTTL 136 (244)
T ss_dssp CSSEEEEESSCCSHHHHH---HHHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGEEEEEEEETTEE
T ss_pred cCCcEEEECCcCCHHHHH---HHHHcCCCEEEEC--------------chHhhCHHHHHHHHHHcCCcEEEEEEccCCEE
Confidence 367888887778888633 3345689988654 5567789999999988764444444443 1
Q ss_pred -ccCCCh--hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc-
Q 013813 233 -RVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET- 308 (436)
Q Consensus 233 -Rlg~~~--~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t- 308 (436)
+.+|.. .+..++++.+++.|++.|.+|++++++... ..+|+.++++++.+++||+++|||.+++++.++++.+
T Consensus 137 ~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~---g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~ 213 (244)
T 1vzw_A 137 RGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQ---GPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVP 213 (244)
T ss_dssp CCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC----------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGG
T ss_pred EEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccccC---CCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcc
Confidence 124421 167888999999999999999988764322 3689999999999999999999999999999999866
Q ss_pred -CcceeeeehHHhhCCccchhhh
Q 013813 309 -GCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 309 -GaDgVmIGRgal~nP~lf~~i~ 330 (436)
|||+|++|++++.+||.|.++.
T Consensus 214 ~Gadgv~vG~al~~~~~~~~~~~ 236 (244)
T 1vzw_A 214 AGVEGAIVGKALYAKAFTLEEAL 236 (244)
T ss_dssp GTEEEEEECHHHHTTSSCHHHHH
T ss_pred CCCceeeeeHHHHcCCCCHHHHH
Confidence 9999999999999999987664
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=138.77 Aligned_cols=191 Identities=17% Similarity=0.175 Sum_probs=128.2
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
+.||++|||..+|+..+...+.+.|.-.+.+.+.+.+.+. ..... ....+.+.+ |...+....+.++++.
T Consensus 42 ~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~~~s~ee~~-------~~i~~--~~~~~~~~~-g~~~~~~e~~~~a~~a 111 (361)
T 3r2g_A 42 NLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEENI-------QEFKK--CKGPVFVSV-GCTENELQRAEALRDA 111 (361)
T ss_dssp SSCEEECCSTTTCSHHHHHHHHHTTCEEBCCSCSCHHHHH-------HHHHT--CCSCCBEEE-CSSHHHHHHHHHHHHT
T ss_pred CCCEEECCCCCchHHHHHHHHHHcCCCEEEeCCCCHHHHH-------HHHhh--cceEEEEEc-CCCHHHHHHHHHHHHc
Confidence 5689999999999999999999998644444443322221 11111 112233333 3334444444455677
Q ss_pred CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--
Q 013813 182 YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-- 258 (436)
Q Consensus 182 g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-- 258 (436)
|+|.|.|+..+.. ++.+.++++++++.. ++||.+|--. + .+.|+.+.++|+|+|.|
T Consensus 112 GvdvI~id~a~G~---------------~~~~~e~I~~ir~~~~~~~Vi~G~V~--T----~e~A~~a~~aGaD~I~Vg~ 170 (361)
T 3r2g_A 112 GADFFCVDVAHAH---------------AKYVGKTLKSLRQLLGSRCIMAGNVA--T----YAGADYLASCGADIIKAGI 170 (361)
T ss_dssp TCCEEEEECSCCS---------------SHHHHHHHHHHHHHHTTCEEEEEEEC--S----HHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEeCCCCC---------------cHhHHHHHHHHHHhcCCCeEEEcCcC--C----HHHHHHHHHcCCCEEEEcC
Confidence 9999999864421 245678888998876 7999997211 2 34578899999999998
Q ss_pred ccC-ccccc-CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 259 HGR-TRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 259 HgR-t~~~~-~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
|+. ..... ..+.+.+.+..|.++++... |||+.|||.+..|+.++|.. |||+||+||.++...+.
T Consensus 171 g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~-GAd~V~iGr~f~~t~Es 237 (361)
T 3r2g_A 171 GGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAF-GADFVMIGGMLAGSAPT 237 (361)
T ss_dssp SSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHT-TCSEEEESGGGTTBTTS
T ss_pred CCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHc-CCCEEEEChHHhCCccC
Confidence 332 11100 00112346677777766555 99999999999999999996 99999999999887653
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-13 Score=135.18 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=132.1
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchh---------hcc----------------------Chhhhhh
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRI---------FTE----------------------SEKYRNE 149 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~---------l~~----------------------~~~~~~~ 149 (436)
+.||++|||.++++..+.+.+.+.|+ +++.|||+..+. +.. +......
T Consensus 67 ~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~ 146 (393)
T 2qr6_A 67 DLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSE 146 (393)
T ss_dssp SSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHH
Confidence 67999999999999999888888876 778887743321 000 0000000
Q ss_pred hhh-ccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccE
Q 013813 150 EFA-TCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPV 228 (436)
Q Consensus 150 ~~~-~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPV 228 (436)
.++ ..+.+.++++.+.+.+..++++.+ .+.|+|.|.++ +.|.. ..++..-. .++ + +.++++.+++||
T Consensus 147 ~i~~~~~~g~~v~~~v~~~~~~e~a~~~--~~agad~i~i~-~~~~~----~~~~~~~~-~~~---~-i~~l~~~~~~pv 214 (393)
T 2qr6_A 147 RIAQVRDSGEIVAVRVSPQNVREIAPIV--IKAGADLLVIQ-GTLIS----AEHVNTGG-EAL---N-LKEFIGSLDVPV 214 (393)
T ss_dssp HHHHHHHTTSCCEEEECTTTHHHHHHHH--HHTTCSEEEEE-CSSCC----SSCCCC---------C-HHHHHHHCSSCE
T ss_pred HHHHHhhcCCeEEEEeCCccHHHHHHHH--HHCCCCEEEEe-CCccc----cccCCCcc-cHH---H-HHHHHHhcCCCE
Confidence 000 011367888888887665544433 34689999888 33310 11221100 122 2 456666679999
Q ss_pred EEEeccCCChhhHHHHHHHHHHcCccEEEeccC--cccccCCCCCccCHHHHHHHHhh-------CC---CcEEEccCCC
Q 013813 229 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNA-------LR---IPVLANGNVR 296 (436)
Q Consensus 229 sVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgR--t~~~~~~~~g~ad~~~i~~ik~~-------~~---iPVianGGI~ 296 (436)
.+|- ..+. +.++.+.++|+|+|.| ++ +........+.+.++.+.++++. ++ +|||++|||.
T Consensus 215 i~gg--i~t~----e~a~~~~~~Gad~i~v-g~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~ 287 (393)
T 2qr6_A 215 IAGG--VNDY----TTALHMMRTGAVGIIV-GGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIE 287 (393)
T ss_dssp EEEC--CCSH----HHHHHHHTTTCSEEEE-SCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCC
T ss_pred EECC--cCCH----HHHHHHHHcCCCEEEE-CCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCC
Confidence 9972 2232 3367788999999999 44 11111112235677888877776 54 9999999999
Q ss_pred CHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 297 HMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 297 s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+..|+.++|.. |||+||+||+++..+.
T Consensus 288 ~~~dv~kalal-GA~~V~iG~~~l~~~e 314 (393)
T 2qr6_A 288 NSGDVVKAIAC-GADAVVLGSPLARAEE 314 (393)
T ss_dssp SHHHHHHHHHH-TCSEEEECGGGGGSTT
T ss_pred CHHHHHHHHHc-CCCEEEECHHHHcCCC
Confidence 99999999986 9999999999999887
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=131.53 Aligned_cols=138 Identities=21% Similarity=0.325 Sum_probs=104.8
Q ss_pred HHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCcc
Q 013813 176 ARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 176 A~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d 254 (436)
|++.++ |+.+|-...+||......| |.+-|.+|+.+.+| ++++++||.-|.|.|. ..-|+.++++|+|
T Consensus 24 a~iae~aGa~av~~l~~~p~d~r~~g--Gv~Rm~dp~~I~~I----~~aVsIPVm~k~righ-----~~EAqilea~GaD 92 (291)
T 3o07_A 24 AKIAEKSGACAVMALESIPADMRKSG--KVCRMSDPKMIKDI----MNSVSIPVMAKVRIGH-----FVEAQIIEALEVD 92 (291)
T ss_dssp HHHHHHHTCSEEEECSSCHHHHHTTT--CCCCCCCHHHHHHH----HTTCSSCEEEEEETTC-----HHHHHHHHHTTCS
T ss_pred HHHHHHhCchhhhhccCCCchhhhcC--CccccCCHHHHHHH----HHhCCCCeEEEEecCc-----HHHHHHHHHcCCC
Confidence 444443 8999999999999866544 78899999887665 6777999999999976 3336778888888
Q ss_pred EEEecc-----------------------------------------Ccccc----------------------cCCC--
Q 013813 255 LLAVHG-----------------------------------------RTRDE----------------------KDGK-- 269 (436)
Q Consensus 255 ~I~VHg-----------------------------------------Rt~~~----------------------~~~~-- 269 (436)
+|.-+- ||... ..++
T Consensus 93 ~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t 172 (291)
T 3o07_A 93 YIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKS 172 (291)
T ss_dssp EEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCC
T ss_pred EEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCC
Confidence 774311 11000 0011
Q ss_pred ---------CCccCHHHHHHHHhhCCCcE--EEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 270 ---------KFRADWNAIKAVKNALRIPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 270 ---------~g~ad~~~i~~ik~~~~iPV--ianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
...++|+.++++++.+++|| |+||||.|++|+.++++ +|||+||||||++..++.
T Consensus 173 ~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le-~GaDGVmVGrAI~~s~DP 238 (291)
T 3o07_A 173 EDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQ-LGCDGVFVGSGIFKSSNP 238 (291)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHH-TTCSCEEECGGGGGSSCH
T ss_pred HHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHH-hCCCEEEEchHHhCCCCH
Confidence 12578999999999999998 56999999999999996 599999999999985553
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-13 Score=126.70 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=113.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE-----E
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-----K 231 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV-----K 231 (436)
+.|+++.=+-++++++.+ .++.|+|+|- .|..++.+|+.+.++ +.+.+.+-+.+.+ +
T Consensus 73 ~ipvi~~Ggi~~~~~~~~---~~~~Gad~V~--------------lg~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~ 134 (241)
T 1qo2_A 73 AEHIQIGGGIRSLDYAEK---LRKLGYRRQI--------------VSSKVLEDPSFLKSL-REIDVEPVFSLDTRGGRVA 134 (241)
T ss_dssp GGGEEEESSCCSHHHHHH---HHHTTCCEEE--------------ECHHHHHCTTHHHHH-HTTTCEEEEEEEEETTEEC
T ss_pred CCcEEEECCCCCHHHHHH---HHHCCCCEEE--------------ECchHhhChHHHHHH-HHcCCcEEEEEEecCCEEE
Confidence 456665433355655444 3446899883 356778889988888 7665332222333 3
Q ss_pred eccCCCh---hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 232 IRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 232 iRlg~~~---~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t 308 (436)
+ .||.. .+..++++.+++.|++.|.+|++++++... ..||+.++++++.+++|||++|||.+++|+.++++.+
T Consensus 135 ~-~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~---g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~ 210 (241)
T 1qo2_A 135 F-KGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQ---EHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVH 210 (241)
T ss_dssp C-TTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTC---CCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHH
T ss_pred E-CCceecCCCCHHHHHHHHHhCCCCEEEEEeecccccCC---cCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcc
Confidence 3 24432 256788999999999999999998775432 3589999999999999999999999999999999876
Q ss_pred ----C-cceeeeehHHhhCCccchhhh
Q 013813 309 ----G-CEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 309 ----G-aDgVmIGRgal~nP~lf~~i~ 330 (436)
| ||||++|++++..+.-+.++.
T Consensus 211 ~~~~G~adgv~vgsal~~~~~~~~~~~ 237 (241)
T 1qo2_A 211 TETNGLLKGVIVGRAFLEGILTVEVMK 237 (241)
T ss_dssp HHTTTSEEEEEECHHHHTTSSCHHHHH
T ss_pred cccCCeEeEEEeeHHHHcCCCCHHHHH
Confidence 9 999999999999988776554
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-14 Score=137.63 Aligned_cols=144 Identities=20% Similarity=0.288 Sum_probs=105.0
Q ss_pred HHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh-------------
Q 013813 173 LNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL------------- 238 (436)
Q Consensus 173 ~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~------------- 238 (436)
.+.|+.++ .|+++|... ||.+...+...|+++|++|+.+.+|.+ ++++||+.|+|+|+..
T Consensus 27 ~e~A~~ae~aGA~aI~~l--~~v~~d~~~~~G~arm~~p~~i~~I~~----av~iPV~~K~rig~~~e~qilea~GaD~I 100 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMAL--ERVPADIRAAGGVARMSDPALIEEIMD----AVSIPVMAKCRIGHTTEALVLEAIGVDMI 100 (330)
T ss_dssp HHHHHHHHHHTCSEEEEC--SSCHHHHC--CCCCCCCCHHHHHHHHH----HCSSCEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHcCCCEEEec--CCccccccCCcchhhcCCHHHHHHHHH----hcCCCeEEEEeecchHHHHHHHHcCCCEE
Confidence 34555554 489999433 388877777779999999999998865 5689999999998620
Q ss_pred ------------h----------------hHHHHHHHHHHcCccEEEecc--------------Cc------------cc
Q 013813 239 ------------Q----------------DTIKYAKMLEDAGCSLLAVHG--------------RT------------RD 264 (436)
Q Consensus 239 ------------~----------------d~~~~ak~le~aG~d~I~VHg--------------Rt------------~~ 264 (436)
. +..+.++++ +.|+++|.+|| |+ ..
T Consensus 101 d~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~~~ 179 (330)
T 2yzr_A 101 DESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDE 179 (330)
T ss_dssp EEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred ehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhccCCHH
Confidence 0 234555556 78888888888 55 11
Q ss_pred ccCC--CCCccCH-------------------------------------HHHHHHHhhCCCcE--EEccCCCCHHHHHH
Q 013813 265 EKDG--KKFRADW-------------------------------------NAIKAVKNALRIPV--LANGNVRHMEDVQK 303 (436)
Q Consensus 265 ~~~~--~~g~ad~-------------------------------------~~i~~ik~~~~iPV--ianGGI~s~eda~~ 303 (436)
+.+. ....++| +.++++++..++|| |++|||.|++|+.+
T Consensus 180 El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~ 259 (330)
T 2yzr_A 180 EVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVNFAAGGVATPADAAL 259 (330)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSEEEECSCCCSHHHHHH
T ss_pred HHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH
Confidence 1100 0012445 88999999889999 69999999999999
Q ss_pred HHHhcCcceeeeehHHhhCCc
Q 013813 304 CLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal~nP~ 324 (436)
+++. |||+|+||++++..+.
T Consensus 260 ~l~~-GaDgV~VGsaI~~a~d 279 (330)
T 2yzr_A 260 MMQL-GSDGVFVGSGIFKSEN 279 (330)
T ss_dssp HHHT-TCSCEEESHHHHTSSC
T ss_pred HHHc-CcCEEeeHHHHhcCCC
Confidence 9997 9999999999995443
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-12 Score=119.86 Aligned_cols=189 Identities=20% Similarity=0.183 Sum_probs=130.9
Q ss_pred HHHHHHHhCCC-eEEeCcccchh-hccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCch
Q 013813 118 FRMLCRRYGAE-AAYTPMLHSRI-FTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQR 195 (436)
Q Consensus 118 fR~l~~~~Ga~-l~~Temisa~~-l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~ 195 (436)
+-..+.+.|++ +.+++|..... ...+.... ..+.. ..+.|+++.-+-.+++++.++ ++.|+|+|.||.
T Consensus 38 ~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i-~~i~~-~~~ipvi~~g~i~~~~~~~~~---~~~Gad~V~i~~----- 107 (253)
T 1h5y_A 38 MAVRYEEEGADEIAILDITAAPEGRATFIDSV-KRVAE-AVSIPVLVGGGVRSLEDATTL---FRAGADKVSVNT----- 107 (253)
T ss_dssp HHHHHHHTTCSCEEEEECCCCTTTHHHHHHHH-HHHHH-HCSSCEEEESSCCSHHHHHHH---HHHTCSEEEESH-----
T ss_pred HHHHHHHcCCCEEEEEeCCccccCCcccHHHH-HHHHH-hcCCCEEEECCCCCHHHHHHH---HHcCCCEEEECh-----
Confidence 33455667887 56666543210 00000111 11211 135788888777888765443 345899999982
Q ss_pred hhhcCcccccccCChHHHHHHHHHHhcc-c----Cc-----cEEEEeccCCC--hhhHHHHHHHHHHcCccEEEeccCcc
Q 013813 196 IARRGNYGAFLMDNLPLVKSLVEKLALN-L----NV-----PVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTR 263 (436)
Q Consensus 196 ~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~----~i-----PVsVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgRt~ 263 (436)
.++.+|+.+.++++..... + +. ++.|++|.+.. ..+..++++.+.+.|++.|.+|+++.
T Consensus 108 ---------~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~ 178 (253)
T 1h5y_A 108 ---------AAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDR 178 (253)
T ss_dssp ---------HHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTT
T ss_pred ---------HHhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccC
Confidence 3456788888888775421 1 22 15788777542 23567889999999999999999887
Q ss_pred cccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 264 DEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 264 ~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.+... ..+++.++++++.+++||+++|||.+.+++.++++ .|||+|++|++++.+++-+.++
T Consensus 179 ~g~~~---~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~-~Ga~~v~vgsal~~~~~~~~~~ 240 (253)
T 1h5y_A 179 DGTGL---GYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAA-AGADAVLAASLFHFRVLSIAQV 240 (253)
T ss_dssp TTTCS---CCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHHH
T ss_pred CCCcC---cCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-cCCcHHHHHHHHHcCCCCHHHH
Confidence 54322 35899999999999999999999999999999997 5999999999999888665543
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=122.04 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=117.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEE-----
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVS----- 229 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVs----- 229 (436)
.+.|+++.=+-++++++.++. +.|+|+|-| |..++.+|+.+.++.+.+.. .+-+.++
T Consensus 74 ~~iPvi~~Ggi~~~~~~~~~~---~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (252)
T 1ka9_F 74 VFIPLTVGGGVRSLEDARKLL---LSGADKVSV--------------NSAAVRRPELIRELADHFGAQAVVLAIDARWRG 136 (252)
T ss_dssp CCSCEEEESSCCSHHHHHHHH---HHTCSEEEE--------------CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred CCCCEEEECCcCCHHHHHHHH---HcCCCEEEE--------------ChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCC
Confidence 367888865556776655444 348898865 45667889999999888742 2222333
Q ss_pred ----EEeccCCCh---hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHH
Q 013813 230 ----CKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 230 ----VKiRlg~~~---~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~ 302 (436)
|+++ +|.. .++.++++.+++.|++.|.+|++++++... ..+|+.++++++.+++||+++|||.+++|+.
T Consensus 137 g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~---g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~ 212 (252)
T 1ka9_F 137 DFPEVHVA-GGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKE---GYDLRLTRMVAEAVGVPVIASGGAGRMEHFL 212 (252)
T ss_dssp TEEEEEET-TTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCS---CCCHHHHHHHHHHCSSCEEEESCCCSHHHHH
T ss_pred CCEEEEEC-CCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCcC---CCCHHHHHHHHHHcCCCEEEeCCCCCHHHHH
Confidence 3432 3432 356788999999999999999887765432 3589999999999999999999999999999
Q ss_pred HHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 303 KCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
++++ +|||+|++|++++.+|+.+.++.
T Consensus 213 ~~~~-~Gadgv~vgsal~~~~~~~~~~~ 239 (252)
T 1ka9_F 213 EAFQ-AGAEAALAASVFHFGEIPIPKLK 239 (252)
T ss_dssp HHHH-TTCSEEEESHHHHTTSSCHHHHH
T ss_pred HHHH-CCCHHHHHHHHHHcCCCCHHHHH
Confidence 9986 69999999999999999888665
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-12 Score=124.71 Aligned_cols=191 Identities=13% Similarity=0.183 Sum_probs=129.6
Q ss_pred cEEEccCCCCCcHHHHHHH---HHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCC-----HHH---H
Q 013813 104 KLIVAPMVDNSELPFRMLC---RRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAND-----PEI---L 172 (436)
Q Consensus 104 ~i~lAPM~gvtd~~fR~l~---~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d-----~e~---~ 172 (436)
++.++||.+..+.. .+| .++|++.+.+.. .+..... ..+ ..+.|+++|+.+.. +.. .
T Consensus 35 ~~~l~p~~~~~~~~--~~~~~~~~~g~~~i~~~~----~~~~~~~---~~~---~~~~~~~v~~~~~~~~~~d~~~~~~~ 102 (273)
T 2qjg_A 35 GVSNGPIKGLIDIR--KTVNDVAEGGANAVLLHK----GIVRHGH---RGY---GKDVGLIIHLSGGTAISPNPLKKVIV 102 (273)
T ss_dssp HHHHCSCTTSSSHH--HHHHHHHHHTCSEEEECH----HHHHSCC---CSS---SCCCEEEEECEECCTTSSSTTCCEEC
T ss_pred ccccCCCcchhhHH--HHHHHHHhcCCCEEEeCH----HHHHHHH---Hhh---cCCCCEEEEEcCCCcCCCCcccchHH
Confidence 45579999999874 444 577998877643 1111100 001 23578999998765 211 3
Q ss_pred HHHHHHHcCCCcEE--EEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec-------cCCChhhHHH
Q 013813 173 LNAARRVEPYCDYV--DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-------VFPNLQDTIK 243 (436)
Q Consensus 173 ~~AA~~v~~g~D~I--dLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR-------lg~~~~d~~~ 243 (436)
.++.+.++.|+|.| .+|.||+.. ..+ .+.+.++++.++ ..++|+.+.+- .+.+..+..+
T Consensus 103 ~~v~~a~~~Ga~~v~~~l~~~~~~~--------~~~---~~~~~~v~~~~~-~~g~~viv~~~~~G~~l~~~~~~~~~~~ 170 (273)
T 2qjg_A 103 TTVEEAIRMGADAVSIHVNVGSDED--------WEA---YRDLGMIAETCE-YWGMPLIAMMYPRGKHIQNERDPELVAH 170 (273)
T ss_dssp SCHHHHHHTTCSEEEEEEEETSTTH--------HHH---HHHHHHHHHHHH-HHTCCEEEEEEECSTTCSCTTCHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEecCCCCH--------HHH---HHHHHHHHHHHH-HcCCCEEEEeCCCCcccCCCCCHhHHHH
Confidence 33344567899999 888887631 111 134555555554 34889888751 1234445556
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCC--HHHHHHHHH---hcCcceeeeehH
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH--MEDVQKCLE---ETGCEGVLSAES 318 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s--~eda~~~l~---~tGaDgVmIGRg 318 (436)
.++.+++.|+|+|.++. +.+|+.++++++.+++||++.|||.+ .+|+.+++. ..|++||++||+
T Consensus 171 ~a~~a~~~Gad~i~~~~-----------~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~ 239 (273)
T 2qjg_A 171 AARLGAELGADIVKTSY-----------TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRN 239 (273)
T ss_dssp HHHHHHHTTCSEEEECC-----------CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHH
T ss_pred HHHHHHHcCCCEEEECC-----------CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHH
Confidence 66889999999998872 25789999999999999999999995 888555442 359999999999
Q ss_pred HhhCCccchhh
Q 013813 319 LLENPALFAGF 329 (436)
Q Consensus 319 al~nP~lf~~i 329 (436)
++.+|+.+..+
T Consensus 240 i~~~~~~~~~~ 250 (273)
T 2qjg_A 240 IFQHDDVVGIT 250 (273)
T ss_dssp HHTSSSHHHHH
T ss_pred hhCCCCHHHHH
Confidence 99999876543
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-12 Score=121.25 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=116.2
Q ss_pred HHHHHhCCCe-EEeCcccchhhc-cChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhh
Q 013813 120 MLCRRYGAEA-AYTPMLHSRIFT-ESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIA 197 (436)
Q Consensus 120 ~l~~~~Ga~l-~~Temisa~~l~-~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~ 197 (436)
..+.+.|++. .+|++..+.... .+...... +.. ..+.|+++.-+-++++++.++. +.|+|+|-|.
T Consensus 37 ~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~-i~~-~~~iPvi~~ggi~~~~~i~~~~---~~Gad~v~lg-------- 103 (266)
T 2w6r_A 37 VEVEKRGAGEILLTSIDRDGTKSGYDTEMIRF-VRP-LTTLPIIASGGAGKMEHFLEAF---LAGADKALAA-------- 103 (266)
T ss_dssp HHHHHHTCSEEEEEETTTSSCSSCCCHHHHHH-HGG-GCCSCEEEESCCCSTHHHHHHH---HHTCSEEECC--------
T ss_pred HHHHHCCCCEEEEEecCcccCCCcccHHHHHH-HHH-hcCCCEEEECCCCCHHHHHHHH---HcCCcHhhhh--------
Confidence 3445678875 556543221111 11111111 221 2367888865557777766554 3588887654
Q ss_pred hcCccccccc-C--ChHHHHHHHHHHh---cc--cCccE-------EEEeccCCCh---hhHHHHHHHHHHcCccEEEec
Q 013813 198 RRGNYGAFLM-D--NLPLVKSLVEKLA---LN--LNVPV-------SCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 198 ~~~~~Gs~Ll-~--~p~~v~eIv~av~---~~--~~iPV-------sVKiRlg~~~---~d~~~~ak~le~aG~d~I~VH 259 (436)
+.++ . +++.+.++++... +. +++++ .|+++ +|.. .+..++++.+++.|++.|.+|
T Consensus 104 ------~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~t 176 (266)
T 2w6r_A 104 ------SVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTH-SGKKNTGILLRDWVVEVEKRGAGEILLT 176 (266)
T ss_dssp ------CCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEE
T ss_pred ------HHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEEC-CCceecchhHHHHHHHHHHcCCCEEEEE
Confidence 4445 3 7888888877654 12 22332 34443 3421 256788899999999999999
Q ss_pred cCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 260 GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 260 gRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
++++++... ..+|+.++++++.+++||+++|||.+++|+.++++ +|||+|++|++++.+|+.+.++.
T Consensus 177 ~~~~~g~~~---g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~-~Gadgv~vgsal~~~~~~~~~~~ 243 (266)
T 2w6r_A 177 SIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASVFHFREIDMRELK 243 (266)
T ss_dssp ETTTTTTCS---CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-HTCSEEEESTTTC----------
T ss_pred eecCCCCcC---CCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-cCCHHHHccHHHHcCCCCHHHHH
Confidence 888765432 35899999999999999999999999999999997 59999999999999999988765
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-12 Score=129.58 Aligned_cols=192 Identities=19% Similarity=0.136 Sum_probs=124.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEec-CCCHHHHHHHHHHH
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC-ANDPEILLNAARRV 179 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~-g~d~e~~~~AA~~v 179 (436)
+.||+.|||.++|+..+...+.+.|. +++...| +...+ ...++......++.+.+. |.+++....+..++
T Consensus 46 ~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~~~-s~e~~-------~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~li 117 (366)
T 4fo4_A 46 NIPMVSASMDTVTEARLAIALAQEGGIGFIHKNM-SIEQQ-------AAQVHQVKISGGLRVGAAVGAAPGNEERVKALV 117 (366)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSS-CHHHH-------HHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHH
T ss_pred CCCEEeCCCCCCChHHHHHHHHHcCCceEeecCC-CHHHH-------HHHHHHHHhcCceeEEEEeccChhHHHHHHHHH
Confidence 56899999999999988766566654 3332211 11111 111111111133444443 33333344444567
Q ss_pred cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 180 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 180 ~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
+.|+|.|.||..- | +++.+.+.++++++.. ++||.++.= .+.+.++.+.++|+|+|.+
T Consensus 118 eaGvd~I~idta~----------G-----~~~~~~~~I~~ik~~~p~v~Vi~G~v------~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 118 EAGVDVLLIDSSH----------G-----HSEGVLQRIRETRAAYPHLEIIGGNV------ATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HTTCSEEEEECSC----------T-----TSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHHHHHHHHHTCSEEEE
T ss_pred hCCCCEEEEeCCC----------C-----CCHHHHHHHHHHHHhcCCCceEeeee------CCHHHHHHHHHcCCCEEEE
Confidence 7899999998420 1 3466777888888876 788887521 1234577888999999999
Q ss_pred c------cCcccccCCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 259 H------GRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 259 H------gRt~~~~~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
. ..++.. ...+.+.+..+.++++ .+++|||+.|||.+..|+.+++.. |||+||+|+.++..++-
T Consensus 177 G~gpGs~~~tr~~--~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~-GAd~V~vGs~f~~t~Es 249 (366)
T 4fo4_A 177 GIGPGSICTTRIV--TGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAA-GASCVMVGSMFAGTEEA 249 (366)
T ss_dssp CSSCSTTBCHHHH--HCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTBTTS
T ss_pred ecCCCCCCCcccc--cCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEChHhhcCCCC
Confidence 2 111110 0122456777777765 468999999999999999999997 99999999999887764
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-12 Score=120.38 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=117.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEE-----
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVS----- 229 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVs----- 229 (436)
.+.|+++--+-++++++.++ ++.|+|+|-+ |..++.+|+.+.++++.+.. .+.+.+.
T Consensus 73 ~~ipvi~~ggI~~~~~~~~~---~~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~ 135 (253)
T 1thf_D 73 IDIPFTVGGGIHDFETASEL---ILRGADKVSI--------------NTAAVENPSLITQIAQTFGSQAVVVAIDAKRVD 135 (253)
T ss_dssp CCSCEEEESSCCSHHHHHHH---HHTTCSEEEE--------------SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred CCCCEEEeCCCCCHHHHHHH---HHcCCCEEEE--------------ChHHHhChHHHHHHHHHcCCCcEEEEEEEEccC
Confidence 46788887777787764444 4568998855 45667789999999888743 2223333
Q ss_pred ----EEeccCCCh---hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHH
Q 013813 230 ----CKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 230 ----VKiRlg~~~---~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~ 302 (436)
|+++ +|.. .+..++++.+++.|++.|.+|++++++... ..+|+.++++++.+++||+++|||.+++|+.
T Consensus 136 g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~---g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~ 211 (253)
T 1thf_D 136 GEFMVFTY-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFL 211 (253)
T ss_dssp TEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCS---CCCHHHHHHHGGGCCSCEEEESCCCSHHHHH
T ss_pred CcEEEEEC-CCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCC---CCCHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 3442 3321 256788999999999999999888765332 3589999999999999999999999999999
Q ss_pred HHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 303 KCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
++++ +|||+|++|++++.+|+.+.++.
T Consensus 212 ~~~~-~Gadgv~vGsal~~~~~~~~~~~ 238 (253)
T 1thf_D 212 EAFL-AGADAALAASVFHFREIDVRELK 238 (253)
T ss_dssp HHHH-TTCSEEEESHHHHTTCSCHHHHH
T ss_pred HHHH-cCChHHHHHHHHHcCCCCHHHHH
Confidence 9996 69999999999999998776554
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.9e-12 Score=127.79 Aligned_cols=128 Identities=21% Similarity=0.204 Sum_probs=95.1
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
.+..+++.|+|.|.|+.+ .| +++.+.++++++++..++||.++.- .+.+.|+.+.++|+
T Consensus 148 ~~~~lveaGvdvIvldta----------~G-----~~~~~~e~I~~ik~~~~i~Vi~g~V------~t~e~A~~a~~aGA 206 (400)
T 3ffs_A 148 RAKLLVEAGVDVIVLDSA----------HG-----HSLNIIRTLKEIKSKMNIDVIVGNV------VTEEATKELIENGA 206 (400)
T ss_dssp HHHHHHHHTCSEEEECCS----------CC-----SBHHHHHHHHHHHTTCCCEEEEEEE------CSHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEeCC----------CC-----CcccHHHHHHHHHhcCCCeEEEeec------CCHHHHHHHHHcCC
Confidence 333456779999988743 11 3566788889998888999998621 22456788999999
Q ss_pred cEEEecc------CcccccCCCCCccCHHHHHHHHhh---CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 254 SLLAVHG------RTRDEKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 254 d~I~VHg------Rt~~~~~~~~g~ad~~~i~~ik~~---~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|+|.+.. .++.. ...+.+++..+.++++. +++|||+.|||.+.+|+.+++.. |||+||+|+.++..++
T Consensus 207 D~I~vG~g~Gs~~~tr~~--~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalal-GAd~V~vGt~f~~t~E 283 (400)
T 3ffs_A 207 DGIKVGIGPGSICTTRIV--AGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAV-GASSVMIGSILAGTEE 283 (400)
T ss_dssp SEEEECC---------CC--SCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTT-TCSEEEECGGGTTBTT
T ss_pred CEEEEeCCCCcCcccccc--cccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHc-CCCEEEEChHHhcCCC
Confidence 9999931 11111 11234578888888764 58999999999999999999986 9999999999998776
Q ss_pred c
Q 013813 325 L 325 (436)
Q Consensus 325 l 325 (436)
-
T Consensus 284 s 284 (400)
T 3ffs_A 284 S 284 (400)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=129.54 Aligned_cols=141 Identities=17% Similarity=0.149 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+++....+..+++.|+|.|+||.+|. +++...++++++++.+ ++||.+|- . .+.+.
T Consensus 251 G~~~~~~~~a~~~~~aG~d~v~i~~~~G---------------~~~~~~~~i~~i~~~~~~~pvi~~~-----v-~t~~~ 309 (514)
T 1jcn_A 251 GTREDDKYRLDLLTQAGVDVIVLDSSQG---------------NSVYQIAMVHYIKQKYPHLQVIGGN-----V-VTAAQ 309 (514)
T ss_dssp CSSTTHHHHHHHHHHTTCSEEEECCSCC---------------CSHHHHHHHHHHHHHCTTCEEEEEE-----E-CSHHH
T ss_pred cCchhhHHHHHHHHHcCCCEEEeeccCC---------------cchhHHHHHHHHHHhCCCCceEecc-----c-chHHH
Confidence 4455556666667788999999998762 2366778999999888 89999871 1 22456
Q ss_pred HHHHHHcCccEEEec---cCccccc----CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 245 AKMLEDAGCSLLAVH---GRTRDEK----DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 245 ak~le~aG~d~I~VH---gRt~~~~----~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
|+.+.++|+|+|.|. |.+.... .+.+....+..+.++++.+++|||++|||.++.|+.+++.. |||+||+||
T Consensus 310 a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~-GAd~V~iG~ 388 (514)
T 1jcn_A 310 AKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALAL-GASTVMMGS 388 (514)
T ss_dssp HHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT-TCSEEEEST
T ss_pred HHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHc-CCCeeeECH
Confidence 889999999999882 2111111 01111345788888998889999999999999999999996 999999999
Q ss_pred HHhhCCccchh
Q 013813 318 SLLENPALFAG 328 (436)
Q Consensus 318 gal~nP~lf~~ 328 (436)
+++.+|+....
T Consensus 389 ~~l~~~e~~~~ 399 (514)
T 1jcn_A 389 LLAATTEAPGE 399 (514)
T ss_dssp TTTTSTTSSCC
T ss_pred HHHcCCcCCcc
Confidence 99999986543
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.2e-11 Score=118.51 Aligned_cols=192 Identities=13% Similarity=0.102 Sum_probs=125.1
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCC-CCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED-RPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e-~plivQL~g~d~e~~~~AA~~v~ 180 (436)
+.||++|||.++++..+-..+.+.|.-.+.+--.+...... .++..+.. .++.+.+ |..++++.++..+++
T Consensus 57 ~~PIi~ApM~~~~~~~lA~Ava~~Gglg~i~~~~s~e~~~~-------~i~~~p~~l~~v~~~~-g~~~~~~~~~~~l~~ 128 (351)
T 2c6q_A 57 GVPIIAANMDTVGTFEMAKVLCKFSLFTAVHKHYSLVQWQE-------FAGQNPDCLEHLAASS-GTGSSDFEQLEQILE 128 (351)
T ss_dssp ECCEEECSSTTTSCHHHHHHHHHTTCEEECCTTCCHHHHHH-------HHHHCGGGCTTEEEEE-CSSHHHHHHHHHHHH
T ss_pred cCCEEECCCCCCCcHHHHHHHHHCCCEEEEcCCCCHHHHHH-------HHhhCchhhheeEeec-CCChHHHHHHHHHHh
Confidence 56999999999999988777777774222221111111100 01100000 2466666 556677777666666
Q ss_pred C--CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 181 P--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 181 ~--g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
. |+|.|.+++. .| ++..+.+.++++++.. ++||.+|.= .+ .+.|+.+.++|+|+|.
T Consensus 129 ~~~g~~~i~i~~~----------~g-----~~~~~~~~i~~lr~~~~~~~vi~g~v--~t----~e~A~~a~~aGaD~I~ 187 (351)
T 2c6q_A 129 AIPQVKYICLDVA----------NG-----YSEHFVEFVKDVRKRFPQHTIMAGNV--VT----GEMVEELILSGADIIK 187 (351)
T ss_dssp HCTTCCEEEEECS----------CT-----TBHHHHHHHHHHHHHCTTSEEEEEEE--CS----HHHHHHHHHTTCSEEE
T ss_pred ccCCCCEEEEEec----------CC-----CcHHHHHHHHHHHHhcCCCeEEEEeC--CC----HHHHHHHHHhCCCEEE
Confidence 5 8999888742 12 3456778899999888 899998831 22 3457888999999998
Q ss_pred ecc--Cccc---ccCCCCCccCHHHHHHHH---hhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 258 VHG--RTRD---EKDGKKFRADWNAIKAVK---NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 258 VHg--Rt~~---~~~~~~g~ad~~~i~~ik---~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|.. .... +..+ .+.+....+.++. +..++|||+.|||.+..|+.++|.. |||+|++||.++..++
T Consensus 188 v~~g~G~~~~~r~~~g-~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlal-GA~~V~vG~~fl~~~E 260 (351)
T 2c6q_A 188 VGIGPGSVCTTRKKTG-VGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGA-GADFVMLGGMLAGHSE 260 (351)
T ss_dssp ECSSCSTTBCHHHHHC-BCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTBTT
T ss_pred ECCCCCcCcCccccCC-CCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHc-CCCceeccHHHhcCcc
Confidence 732 1100 0011 1123344455544 3458999999999999999999997 9999999999987544
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=117.70 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=125.6
Q ss_pred CCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
.|+...+.+.++++++++|+. ++.||+.|+|++|| +++...+++++|++.+ ++++.++.+.+
T Consensus 137 v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~gd~~l~vD~n~~ 200 (384)
T 2pgw_A 137 VGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGR----------------GEKLDLEITAAVRGEIGDARLRLDANEG 200 (384)
T ss_dssp EEBCEECCCSSHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHTTSTTCEEEEECTTC
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCCEEEECcCC----------------CHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 344455667899999988865 56799999999885 5788889999999998 58899998889
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.++++++++.+++.|+++|. ++ . .+.||+..+++++.+++||++++.+.++++++++++...||.|++
T Consensus 201 ~~~~~a~~~~~~l~~~~i~~iE------qP---~-~~~~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~i 270 (384)
T 2pgw_A 201 WSVHDAINMCRKLEKYDIEFIE------QP---T-VSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICI 270 (384)
T ss_dssp CCHHHHHHHHHHHGGGCCSEEE------CC---S-CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEe------CC---C-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999999884 11 1 246899999999999999999999999999999999988999999
Q ss_pred ehHHhhCCccchhhh
Q 013813 316 AESLLENPALFAGFR 330 (436)
Q Consensus 316 GRgal~nP~lf~~i~ 330 (436)
..+.++.++-+.++.
T Consensus 271 k~~~~GGit~~~~i~ 285 (384)
T 2pgw_A 271 GPREIGGIQPMMKAA 285 (384)
T ss_dssp CHHHHTSHHHHHHHH
T ss_pred cchhhCCHHHHHHHH
Confidence 999998888666543
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-11 Score=111.07 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=106.7
Q ss_pred EEEEecCC----CHHHHHHHHHHHc-CCCcEEEEe-----------cCCCchh-hhcC--c-----------------cc
Q 013813 160 LFVQFCAN----DPEILLNAARRVE-PYCDYVDIN-----------LGCPQRI-ARRG--N-----------------YG 203 (436)
Q Consensus 160 livQL~g~----d~e~~~~AA~~v~-~g~D~IdLN-----------~GCP~~~-~~~~--~-----------------~G 203 (436)
+.+|+.++ +++...+.|+.++ .|+++|.++ .++|.-. .+++ + .|
T Consensus 9 ~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~G 88 (223)
T 1y0e_A 9 VSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQ 88 (223)
T ss_dssp EECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHT
T ss_pred EEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccCCHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCC
Confidence 56788888 7777888777664 488888886 4577621 1111 0 12
Q ss_pred cc-------ccCCh-HHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCc
Q 013813 204 AF-------LMDNL-PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFR 272 (436)
Q Consensus 204 s~-------Ll~~p-~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ 272 (436)
+. ...+| +.+.++++.+++.+ +.++.+.+. +. +.++.+++.|+|+|.+ ++.+..........
T Consensus 89 ad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~---t~----~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~ 161 (223)
T 1y0e_A 89 CEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA---TV----EEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQ 161 (223)
T ss_dssp CSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS---SH----HHHHHHHHTTCSEEECTTTTSSTTSTTCCTTH
T ss_pred CCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC---CH----HHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCc
Confidence 21 11133 34567777777655 667766542 22 2355688999999976 34443222111124
Q ss_pred cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 273 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 273 ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
.+|+.++++++.+++||+++|||.+.+++.++++. |||+|++|++++. |+..
T Consensus 162 ~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~-Gad~v~vG~al~~-p~~~ 213 (223)
T 1y0e_A 162 NDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDL-GVHCSVVGGAITR-PKEI 213 (223)
T ss_dssp HHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHT-TCSEEEECHHHHC-HHHH
T ss_pred ccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHc-CCCEEEEChHHcC-cHHH
Confidence 57889999999999999999999999999999986 9999999999765 6644
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-11 Score=126.72 Aligned_cols=141 Identities=19% Similarity=0.140 Sum_probs=105.8
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~ 238 (436)
++..-.|..++.+..+..+++.|+|.|+||..||. .+.+.++++++++.. ++||.++--
T Consensus 221 ~v~aavG~~~d~~~~a~~l~~aG~d~I~id~a~g~---------------~~~~~~~i~~ir~~~p~~~Vi~g~v----- 280 (496)
T 4fxs_A 221 RVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGH---------------SEGVLQRIRETRAAYPHLEIIGGNV----- 280 (496)
T ss_dssp CCEEECCSSSCCHHHHHHHHHTTCSEEEEECSCTT---------------SHHHHHHHHHHHHHCTTCCEEEEEE-----
T ss_pred eeeeeeccccchHHHHHHHHhccCceEEecccccc---------------chHHHHHHHHHHHHCCCceEEEccc-----
Confidence 33334555666677777778889999999998863 356778889998887 789988621
Q ss_pred hhHHHHHHHHHHcCccEEEec------cCcccccCCCCCccCHHHHHHHHhh---CCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 239 QDTIKYAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VH------gRt~~~~~~~~g~ad~~~i~~ik~~---~~iPVianGGI~s~eda~~~l~~tG 309 (436)
.+.+.++.+.++|+|+|.|. ..++... +.+.+++..+.++++. .++|||++|||.+++|+.+++.. |
T Consensus 281 -~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~--g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~-G 356 (496)
T 4fxs_A 281 -ATAEGARALIEAGVSAVKVGIGPGSICTTRIVT--GVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAA-G 356 (496)
T ss_dssp -CSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHH--CCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT-T
T ss_pred -CcHHHHHHHHHhCCCEEEECCCCCcCccccccc--CCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHc-C
Confidence 12355788899999999983 2222111 2235678888888774 47999999999999999999987 9
Q ss_pred cceeeeehHHhhCCc
Q 013813 310 CEGVLSAESLLENPA 324 (436)
Q Consensus 310 aDgVmIGRgal~nP~ 324 (436)
||+||+|+.++.-..
T Consensus 357 Ad~V~iGs~f~~t~E 371 (496)
T 4fxs_A 357 ASCVMVGSMFAGTEE 371 (496)
T ss_dssp CSEEEESTTTTTBTT
T ss_pred CCeEEecHHHhcCCC
Confidence 999999999877554
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=114.97 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=85.7
Q ss_pred EEEEeccCCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH
Q 013813 228 VSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 228 VsVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l 305 (436)
+.||+|.+.. ..+..++++.++++|++.|+++..+...... ..+++.++++++.+++||+++|||.+++++++++
T Consensus 22 ~~v~~~~~~~~~~~~~~~~a~~~~~~G~~~i~v~d~~~~~~~~---~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l 98 (247)
T 3tdn_A 22 FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF 98 (247)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTCSS---CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH
T ss_pred EEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEecCcccCCC---cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH
Confidence 5788886553 2378899999999999999999887653221 4689999999999999999999999999999999
Q ss_pred HhcCcceeeeehHHhhCCccchhhhh
Q 013813 306 EETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
+. |||+|++||+++.||+++.++..
T Consensus 99 ~~-Gad~V~ig~~~l~dp~~~~~~~~ 123 (247)
T 3tdn_A 99 LR-GADKVSINTAAVENPSLITQIAQ 123 (247)
T ss_dssp HT-TCSEECCSHHHHHCTHHHHHHHH
T ss_pred Hc-CCCeeehhhHHhhChHHHHHHHH
Confidence 85 89999999999999999887764
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-11 Score=124.23 Aligned_cols=136 Identities=22% Similarity=0.184 Sum_probs=104.3
Q ss_pred cCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHH
Q 013813 165 CANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 165 ~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~ 243 (436)
.|...+.+..+..+++.|+|.|.||..|+. ...+.++++++++.. ++||.++-- .+.+
T Consensus 224 vG~~~~~~~~a~~l~~aG~d~I~id~a~g~---------------~~~~~~~v~~i~~~~p~~~Vi~g~v------~t~e 282 (490)
T 4avf_A 224 VGTGADTGERVAALVAAGVDVVVVDTAHGH---------------SKGVIERVRWVKQTFPDVQVIGGNI------ATAE 282 (490)
T ss_dssp ECSSTTHHHHHHHHHHTTCSEEEEECSCCS---------------BHHHHHHHHHHHHHCTTSEEEEEEE------CSHH
T ss_pred eccccchHHHHHHHhhcccceEEecccCCc---------------chhHHHHHHHHHHHCCCceEEEeee------CcHH
Confidence 355566677777788889999999988763 456778889998887 789988621 1234
Q ss_pred HHHHHHHcCccEEEec------cCcccccCCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 244 YAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 244 ~ak~le~aG~d~I~VH------gRt~~~~~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.++.+.++|+|+|.|- ..++.. .+.+.+++..+.++++.+ ++|||+.|||.+.+|+.+++.. |||+||
T Consensus 283 ~a~~l~~aGaD~I~vg~g~Gs~~~t~~~--~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~-GAd~V~ 359 (490)
T 4avf_A 283 AAKALAEAGADAVKVGIGPGSICTTRIV--AGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVA-GAYCVM 359 (490)
T ss_dssp HHHHHHHTTCSEEEECSSCSTTCHHHHH--TCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHH-TCSEEE
T ss_pred HHHHHHHcCCCEEEECCCCCcCCCcccc--CCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHc-CCCeee
Confidence 5788999999999982 111111 122356788888888754 7999999999999999999987 999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+|++++....
T Consensus 360 vGs~~~~~~E 369 (490)
T 4avf_A 360 MGSMFAGTEE 369 (490)
T ss_dssp ECTTTTTBTT
T ss_pred ecHHHhcCCC
Confidence 9999987654
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=110.30 Aligned_cols=126 Identities=13% Similarity=0.170 Sum_probs=96.9
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
++...++.|+|.|-|+..+ ..+|+.+.++++.+++. ++++.+.+. +.+.++.++++|+
T Consensus 93 ~i~~~~~aGad~I~l~~~~--------------~~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~Ga 150 (229)
T 3q58_A 93 DVDALAQAGADIIAFDASF--------------RSRPVDIDSLLTRIRLH-GLLAMADCS-------TVNEGISCHQKGI 150 (229)
T ss_dssp HHHHHHHHTCSEEEEECCS--------------SCCSSCHHHHHHHHHHT-TCEEEEECS-------SHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEECccc--------------cCChHHHHHHHHHHHHC-CCEEEEecC-------CHHHHHHHHhCCC
Confidence 4444567799999888532 23566788888888764 788888743 2455778899999
Q ss_pred cEEE--eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 254 SLLA--VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 254 d~I~--VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
|+|. ++|.|.... ....+|+.++++++. ++|||++|||.|++|+.++++. |||+|++|++++ +|+.+.
T Consensus 151 d~Ig~~~~g~t~~~~---~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~-GadgV~VGsai~-~p~~~~ 220 (229)
T 3q58_A 151 EFIGTTLSGYTGPIT---PVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIEH-GAWAVTVGSAIT-RIEHIC 220 (229)
T ss_dssp SEEECTTTTSSSSCC---CSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHT-TCSEEEECHHHH-CHHHHH
T ss_pred CEEEecCccCCCCCc---CCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHc-CCCEEEEchHhc-ChHHHH
Confidence 9995 466665432 235789999999988 9999999999999999999986 999999996665 676554
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=109.39 Aligned_cols=125 Identities=11% Similarity=0.158 Sum_probs=96.0
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
++...++.|+|.|-|+..+ ..+|+.+.++++.+++. ++++.+.+. +.+.++.++++|+
T Consensus 93 ~i~~~~~~Gad~V~l~~~~--------------~~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~Ga 150 (232)
T 3igs_A 93 DVDALAQAGAAIIAVDGTA--------------RQRPVAVEALLARIHHH-HLLTMADCS-------SVDDGLACQRLGA 150 (232)
T ss_dssp HHHHHHHHTCSEEEEECCS--------------SCCSSCHHHHHHHHHHT-TCEEEEECC-------SHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEECccc--------------cCCHHHHHHHHHHHHHC-CCEEEEeCC-------CHHHHHHHHhCCC
Confidence 4444567799999888532 23567788888888754 788888743 2455778899999
Q ss_pred cEEE--eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 254 SLLA--VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 254 d~I~--VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
|+|. ++|++...+ ....+|+.++++++. ++|||++|||.|++|+.++++. |||+|++|++++ +|+..
T Consensus 151 d~Ig~~~~g~t~~~~---~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~-GadgV~VGsal~-~p~~~ 219 (232)
T 3igs_A 151 DIIGTTMSGYTTPDT---PEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAIRY-GAWAVTVGSAIT-RLEHI 219 (232)
T ss_dssp SEEECTTTTSSSSSC---CSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHHT-TCSEEEECHHHH-CHHHH
T ss_pred CEEEEcCccCCCCCC---CCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHc-CCCEEEEehHhc-CHHHH
Confidence 9995 466665432 235789999999988 9999999999999999999986 999999997766 56544
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-10 Score=111.18 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=96.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 237 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~ 237 (436)
.+++++. ++.++++++ .+.|+|+|.+. ||.+...+...|+.++++++.+.+|. +.+++||.+|+|.+..
T Consensus 22 ~g~i~~~---~~~~~a~~~--~~~Ga~~I~~l--~p~~~~~~~~~G~~~~~~~~~i~~I~----~~~~iPv~~k~r~g~~ 90 (305)
T 2nv1_A 22 GGVIMDV---INAEQAKIA--EEAGAVAVMAL--ERVPADIRAAGGVARMADPTIVEEVM----NAVSIPVMAKARIGHI 90 (305)
T ss_dssp TCEEEEE---SSHHHHHHH--HHTTCSEEEEC--CC-------CCCCCCCCCHHHHHHHH----HHCSSCEEEEECTTCH
T ss_pred CCeeecC---CHHHHHHHH--HHcCCCEEEEc--CCCcchhhhccCcccCCCHHHHHHHH----HhCCCCEEecccccch
Confidence 4566643 555444333 35689999544 35544444455777888888777764 4468999999998530
Q ss_pred h-----------------------------------------hhHHHHHHHHHHcCccEEEecc--------------Cc
Q 013813 238 L-----------------------------------------QDTIKYAKMLEDAGCSLLAVHG--------------RT 262 (436)
Q Consensus 238 ~-----------------------------------------~d~~~~ak~le~aG~d~I~VHg--------------Rt 262 (436)
. .+..+..+ ..+.|+|+|.++| |+
T Consensus 91 ~~~~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~-a~~~Gad~V~~~G~~g~g~~~~~~~h~rt 169 (305)
T 2nv1_A 91 VEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATR-RIAEGASMLRTKGEPGTGNIVEAVRHMRK 169 (305)
T ss_dssp HHHHHHHHHTCSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHH-HHHTTCSEEEECCCTTSCCTHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHHHH-HHHCCCCEEEeccccCccchHHHHhhhhh
Confidence 0 00112222 2355666666643 11
Q ss_pred ------------ccccCC--CCCccCHHHHHHHHhhCCCcEE--EccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 263 ------------RDEKDG--KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 263 ------------~~~~~~--~~g~ad~~~i~~ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
..+.+. ...+.++++++++++.+++||+ ++|||.|++|+.++++. |||+|++||+++..+.
T Consensus 170 ~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~-GadgV~vGsai~~~~~ 246 (305)
T 2nv1_A 170 VNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQL-GADGVFVGSGIFKSDN 246 (305)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHT-TCSCEEECGGGGGSSC
T ss_pred hhccchhhccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHc-CCCEEEEcHHHHcCCC
Confidence 000000 0024678999999998899999 99999999999999984 9999999999997544
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=108.43 Aligned_cols=101 Identities=20% Similarity=0.309 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEE--EeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 212 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 212 ~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I--~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
.+.++++.+++.. +.++.+.++. . +-++.+.++|+|+| ++++.+... ... ...+++.++++++. ++|
T Consensus 119 ~~~~~i~~i~~~~~~~~v~~~~~t---~----~ea~~a~~~Gad~i~~~v~g~~~~~-~~~-~~~~~~~i~~~~~~-~ip 188 (234)
T 1yxy_A 119 DIASFIRQVKEKYPNQLLMADIST---F----DEGLVAHQAGIDFVGTTLSGYTPYS-RQE-AGPDVALIEALCKA-GIA 188 (234)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECSS---H----HHHHHHHHTTCSEEECTTTTSSTTS-CCS-SSCCHHHHHHHHHT-TCC
T ss_pred cHHHHHHHHHHhCCCCeEEEeCCC---H----HHHHHHHHcCCCEEeeeccccCCCC-cCC-CCCCHHHHHHHHhC-CCC
Confidence 4567777777665 6777776432 2 22677889999999 788875432 111 24689999999988 999
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|++.|||+|.+++.++++. |||+|++|++++. |+
T Consensus 189 via~GGI~s~~~~~~~~~~-Gad~v~vGsal~~-p~ 222 (234)
T 1yxy_A 189 VIAEGKIHSPEEAKKINDL-GVAGIVVGGAITR-PK 222 (234)
T ss_dssp EEEESCCCSHHHHHHHHTT-CCSEEEECHHHHC-HH
T ss_pred EEEECCCCCHHHHHHHHHC-CCCEEEEchHHhC-hH
Confidence 9999999999999999985 9999999999887 53
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=110.01 Aligned_cols=143 Identities=15% Similarity=0.216 Sum_probs=117.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
..|+...+...++++++++|+. ++.||+.|+|++||+ +++...++++++++.+ ++++.++.+
T Consensus 133 ~vp~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan 197 (359)
T 1mdl_A 133 PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYN 197 (359)
T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred CeeeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3455555433688999988864 567999999999872 4677888999999887 689999999
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
.+++.++++++++.+++.|+++|- +.. .+.||+..+++++.+++||++++.+.+.++++++++...||.|
T Consensus 198 ~~~~~~~a~~~~~~l~~~~i~~iE-------~P~---~~~~~~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v 267 (359)
T 1mdl_A 198 QSLDVPAAIKRSQALQQEGVTWIE-------EPT---LQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLA 267 (359)
T ss_dssp TCSCHHHHHHHHHHHHHHTCSCEE-------CCS---CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEE-------CCC---ChhhHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence 999999999999999999999872 211 1468999999999999999999999999999999999889999
Q ss_pred eeehHHhhCCc
Q 013813 314 LSAESLLENPA 324 (436)
Q Consensus 314 mIGRgal~nP~ 324 (436)
++..+.++..+
T Consensus 268 ~ik~~~~GGi~ 278 (359)
T 1mdl_A 268 MPDAMKIGGVT 278 (359)
T ss_dssp CCBTTTTTHHH
T ss_pred eecchhhCCHH
Confidence 98755444433
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-09 Score=108.99 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=114.2
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
++++++++|+. ++.||+.|.|++||+ +++...++++++++.+ ++++.++.+.+++.++++++
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~ 210 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP---------------DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRA 210 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 89999888864 567999999999984 4677788999999887 68999999999999999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.+++.|+++|- +.. .+.||+..+++++.+++||++++.+.+.++++++++...||.|++..+.++.++
T Consensus 211 ~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~ 280 (371)
T 2ovl_A 211 ARALAPFDLHWIE-------EPT---IPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYT 280 (371)
T ss_dssp HHHHGGGCCSEEE-------CCS---CTTCHHHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHH
T ss_pred HHHHHhcCCCEEE-------CCC---CcccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHH
Confidence 9999999999873 211 146899999999999999999999999999999999988999999866665554
Q ss_pred cch
Q 013813 325 LFA 327 (436)
Q Consensus 325 lf~ 327 (436)
-+.
T Consensus 281 ~~~ 283 (371)
T 2ovl_A 281 TFR 283 (371)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=108.72 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=116.7
Q ss_pred CCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+...+...++++++++|+. ++.||+.|+|++|+ +++...+++++|++.+ ++++.++.+.
T Consensus 135 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~d~~l~vDan~ 198 (379)
T 2rdx_A 135 APMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGA----------------DWQSDIDRIRACLPLLEPGEKAMADANQ 198 (379)
T ss_dssp EEBCEECCCSCSHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHGGGSCTTCEEEEECTT
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeccC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 344444544689999988865 56799999999886 4688889999999988 5899999999
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++++++.+++.|+ +|. + .. + ||+..+++++.+++||++++.+.+.++++++++...||.|+
T Consensus 199 ~~~~~~a~~~~~~l~~~~i-~iE-------~--P~--~-~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ 265 (379)
T 2rdx_A 199 GWRVDNAIRLARATRDLDY-ILE-------Q--PC--R-SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICC 265 (379)
T ss_dssp CSCHHHHHHHHHHTTTSCC-EEE-------C--CS--S-SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhCCe-EEe-------C--Cc--C-CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEE
Confidence 9999999999999999999 762 2 22 3 89999999999999999999999999999999998899999
Q ss_pred eehHHhhCCccc
Q 013813 315 SAESLLENPALF 326 (436)
Q Consensus 315 IGRgal~nP~lf 326 (436)
+-.+.++..+-+
T Consensus 266 ik~~~~GGit~~ 277 (379)
T 2rdx_A 266 LKISNLGGLSKA 277 (379)
T ss_dssp EETTTTTSHHHH
T ss_pred EeccccCCHHHH
Confidence 986665555433
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-09 Score=107.80 Aligned_cols=143 Identities=9% Similarity=0.044 Sum_probs=117.4
Q ss_pred CCEEEEec-CCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 158 RPLFVQFC-ANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~-g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
.|+...+. ..+++++.++|+. ++.||+.|+|++|| .+++. .++++++++.+ ++++.++.+
T Consensus 153 vp~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~-~e~v~avr~a~g~d~~l~vDan 216 (388)
T 2nql_A 153 FPAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV---------------ADDGP-AAEIANLRQVLGPQAKIAADMH 216 (388)
T ss_dssp EEEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG---------------CTTCH-HHHHHHHHHHHCTTSEEEEECC
T ss_pred eEeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC---------------CChHH-HHHHHHHHHHhCCCCEEEEECC
Confidence 45555553 3689999988865 56799999999875 24667 88899998877 689999999
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
.+++.++++++++.+++.|+++|. +.. .+.||+..+++++.+++||++.+.+.++++++++++...||.|
T Consensus 217 ~~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v 286 (388)
T 2nql_A 217 WNQTPERALELIAEMQPFDPWFAE-------APV---WTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIV 286 (388)
T ss_dssp SCSCHHHHHHHHHHHGGGCCSCEE-------CCS---CTTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCCCEEE-------CCC---ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEE
Confidence 899999999999999999999873 211 1468999999999999999999999999999999998889999
Q ss_pred eeehHHhhCCccch
Q 013813 314 LSAESLLENPALFA 327 (436)
Q Consensus 314 mIGRgal~nP~lf~ 327 (436)
++-... +.++-+.
T Consensus 287 ~ik~~~-GGit~~~ 299 (388)
T 2nql_A 287 QPEMGH-KGITNFI 299 (388)
T ss_dssp CCCHHH-HCHHHHH
T ss_pred EecCCC-CCHHHHH
Confidence 997666 6555443
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-09 Score=99.31 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=113.3
Q ss_pred CCCEEEEecCCCH--HHHHHHHHHHcCCCcEEEEe--cCCCchhhhcCccccccc----------CChHHHHHHHHHHhc
Q 013813 157 DRPLFVQFCANDP--EILLNAARRVEPYCDYVDIN--LGCPQRIARRGNYGAFLM----------DNLPLVKSLVEKLAL 222 (436)
Q Consensus 157 e~plivQL~g~d~--e~~~~AA~~v~~g~D~IdLN--~GCP~~~~~~~~~Gs~Ll----------~~p~~v~eIv~av~~ 222 (436)
...++..|.+.+| +.+.+.++.+++++|.|+|+ ++||.- + |.... .+.....++++++++
T Consensus 4 ~~~~~~~i~~~~~~~~~~~~~a~~~~~~ad~iel~~p~sdp~~----D--G~~~~~~~~~al~~g~~~~~~~~~i~~i~~ 77 (248)
T 1geq_A 4 DGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIA----D--GKTIQESHYRALKNGFKLREAFWIVKEFRR 77 (248)
T ss_dssp TTEEEEEEETTSSCHHHHHHHHHHHGGGBSCEEEECCCSCCTT----S--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CccEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEECCCCCCCCC----C--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 3468899999998 58888887665449999999 678762 1 11100 156777899999999
Q ss_pred ccCccEEEEeccCC-ChhhHHHHHHHHHHcCccEEEeccCcc---------------------cc---------------
Q 013813 223 NLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTR---------------------DE--------------- 265 (436)
Q Consensus 223 ~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG~d~I~VHgRt~---------------------~~--------------- 265 (436)
.+++||.+...... ......++++.+.++|+|+|++|.-.. ..
T Consensus 78 ~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d 157 (248)
T 1geq_A 78 HSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTT 157 (248)
T ss_dssp TCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCS
T ss_pred hCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCC
Confidence 88899888753210 001125678888899999999874110 00
Q ss_pred -------cCCCCC------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 266 -------KDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 266 -------~~~~~g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
..+..| +..++.++++++.+++||++.|||++.+++.++++. |+|+|.+|++++..
T Consensus 158 ~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~-Gad~vivGsai~~~ 226 (248)
T 1geq_A 158 GFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKE-GANGVVVGSALVKI 226 (248)
T ss_dssp SEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHT-TCSEEEECHHHHHH
T ss_pred CeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHc-CCCEEEEcHHHHhh
Confidence 000111 123668889998889999999999999999999875 99999999998864
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-09 Score=107.27 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=123.7
Q ss_pred CCCCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 156 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
...|+..++++.+++++++.++. ++.|++.|.|++|| +++.-.+++++|++.+ ++++.|+.
T Consensus 133 ~~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~----------------~~~~d~~~v~avR~a~g~~~~l~vDa 196 (378)
T 3eez_A 133 TPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG----------------DVERDIARIRDVEDIREPGEIVLYDV 196 (378)
T ss_dssp SCEEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHTTSCCTTCEEEEEC
T ss_pred CeEEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence 45567788889999999988864 56799999999987 3666788999999988 58999999
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
+.+++.+++.++++.+++.|+ +|. + .. + +|+..+++++.+++||++++.+.+.++++++++..++|.
T Consensus 197 n~~~~~~~a~~~~~~l~~~~i-~iE-------q--P~--~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~ 263 (378)
T 3eez_A 197 NRGWTRQQALRVMRATEDLHV-MFE-------Q--PG--E-TLDDIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAEV 263 (378)
T ss_dssp TTCCCHHHHHHHHHHTGGGTC-CEE-------C--CS--S-SHHHHHHTGGGCCCCEEECTTCCSHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHhccCCe-EEe-------c--CC--C-CHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCE
Confidence 999999999999999999998 762 2 12 2 899999999999999999999999999999999988999
Q ss_pred eeeehHHhhCCccchhh
Q 013813 313 VLSAESLLENPALFAGF 329 (436)
Q Consensus 313 VmIGRgal~nP~lf~~i 329 (436)
|++..+.++.++-+.++
T Consensus 264 v~ik~~~~GGit~~~~i 280 (378)
T 3eez_A 264 FGIKLNRVGGLTRAARM 280 (378)
T ss_dssp EEEEHHHHTSHHHHHHH
T ss_pred EEeCchhcCCHHHHHHH
Confidence 99998887776655444
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.98 E-value=5.8e-10 Score=106.11 Aligned_cols=97 Identities=12% Similarity=0.259 Sum_probs=83.3
Q ss_pred EEEEeccCCCh------hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHH
Q 013813 228 VSCKIRVFPNL------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 301 (436)
Q Consensus 228 VsVKiRlg~~~------~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda 301 (436)
..||+|.|+.. .++.++++.++++|++.|+++.++...... ..+++.+++++ .+++||+++|||.+.+++
T Consensus 13 ~~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~~~~~~---~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~ 88 (241)
T 1qo2_A 13 KVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIENS---GENLPVLEKLS-EFAEHIQIGGGIRSLDYA 88 (241)
T ss_dssp EEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHHCC---CTTHHHHHHGG-GGGGGEEEESSCCSHHHH
T ss_pred EEEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEecccccccCC---chhHHHHHHHH-hcCCcEEEECCCCCHHHH
Confidence 56888887631 478899999999999999999876643221 46799999999 789999999999999999
Q ss_pred HHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 302 QKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 302 ~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.++++. |||+|++|++++.||+++.++
T Consensus 89 ~~~~~~-Gad~V~lg~~~l~~p~~~~~~ 115 (241)
T 1qo2_A 89 EKLRKL-GYRRQIVSSKVLEDPSFLKSL 115 (241)
T ss_dssp HHHHHT-TCCEEEECHHHHHCTTHHHHH
T ss_pred HHHHHC-CCCEEEECchHhhChHHHHHH
Confidence 999985 999999999999999998887
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-08 Score=122.79 Aligned_cols=203 Identities=13% Similarity=0.135 Sum_probs=136.9
Q ss_pred HHHHhCCCcEEEccCC-CCCcHHHHHHHHHhCCCeEE--eCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHH-
Q 013813 96 HWTKLGRPKLIVAPMV-DNSELPFRMLCRRYGAEAAY--TPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEI- 171 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~-gvtd~~fR~l~~~~Ga~l~~--Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~- 171 (436)
+-+.+|+.||++|||. ++|+..+-..+.+.|.-.+. ..+.+.+.+.......+. ..++++|++++++-.+++.
T Consensus 576 ~t~~lg~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~---~~~~~~p~gvN~~~~~p~~~ 652 (2060)
T 2uva_G 576 MSRLLGVPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEK---AIPPGRGITVNLIYVNPRAM 652 (2060)
T ss_dssp HHHHHTSCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGG---GSCTTCCEEEEEETTCTTHH
T ss_pred hhhccccceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHh---hcccCCCeEecccccCcccc
Confidence 4566778999999999 79999988878888764333 333333333222111111 1124789999999876653
Q ss_pred --HHHHHHH-HcCCCcE--EEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 172 --LLNAARR-VEPYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 172 --~~~AA~~-v~~g~D~--IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
+.+..+. ++.|++. |.+..|.|. ++.+.++++.. ++++...+ . +..++.+.+.
T Consensus 653 ~~~~~~~~~~~~~gv~i~gv~~~~G~p~---------------~e~~~~~l~~~----gi~~i~~v-~--~~~~a~~~v~ 710 (2060)
T 2uva_G 653 GWQIPLLGRLRADGVPIEGLTIGAGVPS---------------IEVANEYIQTL----GIRHISFK-P--GSVDAIQQVI 710 (2060)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEESSCCC---------------HHHHHHHHHHS----CCSEEEEC-C--CSHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcceEeecCCCCC---------------HHHHHHHHHHc----CCeEEEec-C--CHHHHHHHHH
Confidence 2344443 4568776 888877663 23344444432 67776442 2 3467777777
Q ss_pred HHHHcCccEEE---eccCcccccCCCC--CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH-----------HhcCc
Q 013813 247 MLEDAGCSLLA---VHGRTRDEKDGKK--FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL-----------EETGC 310 (436)
Q Consensus 247 ~le~aG~d~I~---VHgRt~~~~~~~~--g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l-----------~~tGa 310 (436)
.+.++|+|.|+ +.|....+-.+.. ...-+..+.+|++.+++|||+.|||.+.+++.++| .. ||
T Consensus 711 ~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ws~~~g~pal-GA 789 (2060)
T 2uva_G 711 NIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPM-PF 789 (2060)
T ss_dssp HHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCC-CC
T ss_pred HHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCC-CC
Confidence 78999999999 7665443221110 01235788999999999999999999999999999 75 99
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|||++|+.++.-.+
T Consensus 790 dgV~~GT~f~~t~E 803 (2060)
T 2uva_G 790 DGCMFGSRMMTAKE 803 (2060)
T ss_dssp SCEEESGGGGGBTT
T ss_pred CEEEEchhhhcCcC
Confidence 99999999988766
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=98.96 E-value=9.1e-09 Score=101.46 Aligned_cols=210 Identities=15% Similarity=0.132 Sum_probs=141.1
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcc--cc--hhhccChhhh-h------hhhhccCCCCCEEEE
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPML--HS--RIFTESEKYR-N------EEFATCKEDRPLFVQ 163 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temi--sa--~~l~~~~~~~-~------~~~~~~~~e~plivQ 163 (436)
.||+.+.++..+. |.++=|..+-+++.+.|.+.+|+--. +. .++....... . ..+. ...+.|+++.
T Consensus 8 ~lr~l~~~~~~i~--~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~-~~~~~PviaD 84 (295)
T 1xg4_A 8 AFRAALTKENPLQ--IVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRIT-DVCSLPLLVD 84 (295)
T ss_dssp HHHHHHHHSSSEE--EEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHH-HHCCSCEEEE
T ss_pred HHHHHHhCCCcEE--EecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHH-hhCCCCEEec
Confidence 3665543332233 56778899989999999998775422 21 1211111000 0 0011 1235799999
Q ss_pred e---cCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCccc-ccccCChHHHHHHHHHHhcccCccEEEEeccCC--
Q 013813 164 F---CANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-- 236 (436)
Q Consensus 164 L---~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~G-s~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-- 236 (436)
+ +|.+++...+.++.+ +.|+++|.|+-+|-.+ +.++.| ..|....+.+..|-.++....+.++.|.-|...
T Consensus 85 ~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k--~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~ 162 (295)
T 1xg4_A 85 ADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAK--RSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALA 162 (295)
T ss_dssp CTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSC--CCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHH
T ss_pred CCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCc--ccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhh
Confidence 9 888999999888655 5699999999998432 223333 446665666666666655555778888888753
Q ss_pred --ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCC--CCHHHHHHHHHhcCcce
Q 013813 237 --NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV--RHMEDVQKCLEETGCEG 312 (436)
Q Consensus 237 --~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI--~s~eda~~~l~~tGaDg 312 (436)
..+++++-++.++++|+|.|.+++.+ +++.++++.+.+++|+++|.-. .++..-.+-|...|++.
T Consensus 163 ~~gl~~ai~ra~ay~eAGAd~i~~e~~~-----------~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL~~~G~~~ 231 (295)
T 1xg4_A 163 VEGLDAAIERAQAYVEAGAEMLFPEAIT-----------ELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAM 231 (295)
T ss_dssp HHCHHHHHHHHHHHHHTTCSEEEETTCC-----------SHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCSE
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEeCCC-----------CHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHHHHcCCCE
Confidence 23788888999999999999999763 4688999999999999988754 22222223345569999
Q ss_pred eeeehHHh
Q 013813 313 VLSAESLL 320 (436)
Q Consensus 313 VmIGRgal 320 (436)
|++|.+++
T Consensus 232 v~~~~~~~ 239 (295)
T 1xg4_A 232 ALYPLSAF 239 (295)
T ss_dssp EEESSHHH
T ss_pred EEEChHHH
Confidence 99998865
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-09 Score=111.36 Aligned_cols=136 Identities=19% Similarity=0.244 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHH
Q 013813 169 PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKM 247 (436)
Q Consensus 169 ~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~ 247 (436)
.+...++..+++.|+|.|.+|++ .| .+....++++++++.+ ++||.++- +.+. +.++.
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~----------~G-----~~~~~~e~i~~i~~~~p~~pvi~g~--~~t~----e~a~~ 294 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTA----------HG-----HSRRVIETLEMIKADYPDLPVVAGN--VATP----EGTEA 294 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCS----------CC-----SSHHHHHHHHHHHHHCTTSCEEEEE--ECSH----HHHHH
T ss_pred HhHHHHHHHHHHhCCCEEEEEec----------CC-----chHHHHHHHHHHHHHCCCceEEeCC--cCCH----HHHHH
Confidence 33344444567789999999864 12 3456778899998888 79999872 2232 34578
Q ss_pred HHHcCccEEEeccCcc--c---ccCCCCCccCHHHHHHHHhh---CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 248 LEDAGCSLLAVHGRTR--D---EKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 248 le~aG~d~I~VHgRt~--~---~~~~~~g~ad~~~i~~ik~~---~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
+.++|+|+|.|.+... . ...+ .+.+.+..+..+++. +++|||+.|||.++.|+.+++.. |||+|++||++
T Consensus 295 l~~~G~d~I~v~~~~G~~~~~~~~~~-~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~-GAd~V~iGr~~ 372 (494)
T 1vrd_A 295 LIKAGADAVKVGVGPGSICTTRVVAG-VGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAA-GAESVMVGSIF 372 (494)
T ss_dssp HHHTTCSEEEECSSCSTTCHHHHHHC-CCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHT-TCSEEEESHHH
T ss_pred HHHcCCCEEEEcCCCCccccccccCC-CCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHc-CCCEEEECHHH
Confidence 8899999999833211 0 0011 123445555555544 68999999999999999999996 99999999999
Q ss_pred hhCCccch
Q 013813 320 LENPALFA 327 (436)
Q Consensus 320 l~nP~lf~ 327 (436)
+.+|++..
T Consensus 373 l~~~e~~~ 380 (494)
T 1vrd_A 373 AGTEEAPG 380 (494)
T ss_dssp HTBTTSSS
T ss_pred hcCCcCCc
Confidence 99988744
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=98.95 E-value=6.5e-09 Score=105.51 Aligned_cols=144 Identities=10% Similarity=0.122 Sum_probs=120.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
..|+...+...+++.+.++|+. ++.||+.|.|++||| +++...++++++++.+ ++++.++.+
T Consensus 134 ~v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan 198 (378)
T 2qdd_A 134 PVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGS---------------DPAQDIARIEAISAGLPDGHRVTFDVN 198 (378)
T ss_dssp CEEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHSCCTTCEEEEECT
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHhhhheeecCCCC---------------ChHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4566666666889999988865 466999999999986 4678889999999987 589999999
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
.+++.++++++++.++ .|+ +| ++ .. + ||+..+++++.+++||++++.+.+.++++++++...+|.|
T Consensus 199 ~~~~~~~a~~~~~~l~-~~i-~i-------Eq--P~--~-d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v 264 (378)
T 2qdd_A 199 RAWTPAIAVEVLNSVR-ARD-WI-------EQ--PC--Q-TLDQCAHVARRVANPIMLDECLHEFSDHLAAWSRGACEGV 264 (378)
T ss_dssp TCCCHHHHHHHHTSCC-CCC-EE-------EC--CS--S-SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHhC-CCc-EE-------Ec--CC--C-CHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEE
Confidence 8999999999999998 888 66 22 22 3 8999999999999999999999999999999999889999
Q ss_pred eeehHHhhCCccchhh
Q 013813 314 LSAESLLENPALFAGF 329 (436)
Q Consensus 314 mIGRgal~nP~lf~~i 329 (436)
++-.+.++.++-+.++
T Consensus 265 ~ik~~~~GGi~~~~~i 280 (378)
T 2qdd_A 265 KIKPNRVGGLTRARQI 280 (378)
T ss_dssp EECHHHHTSHHHHHHH
T ss_pred EecccccCCHHHHHHH
Confidence 9988877776655443
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-09 Score=112.55 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=100.1
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~ 238 (436)
+.+.+ |...+.+..+..+++.|+|.|.||..+|. ...+.++++++++.. ++||.++- .
T Consensus 247 V~aav-g~~~d~~era~aLveaGvd~I~Id~a~g~---------------~~~v~~~i~~i~~~~~~~~vi~g~-----v 305 (511)
T 3usb_A 247 VGAAV-GVTADAMTRIDALVKASVDAIVLDTAHGH---------------SQGVIDKVKEVRAKYPSLNIIAGN-----V 305 (511)
T ss_dssp CEEEE-CSSTTHHHHHHHHHHTTCSEEEEECSCTT---------------SHHHHHHHHHHHHHCTTSEEEEEE-----E
T ss_pred eeeee-eeccchHHHHHHHHhhccceEEecccccc---------------hhhhhhHHHHHHHhCCCceEEeee-----e
Confidence 33444 33445566666778889999999977652 345778888888876 47998872 1
Q ss_pred hhHHHHHHHHHHcCccEEEec------cCcccccCCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 239 QDTIKYAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VH------gRt~~~~~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tG 309 (436)
.+.+.|+.+.++|+|+|.|- ..++.. .+.+.+++..+.++++ ..++|||+.|||.+..|+.+++.. |
T Consensus 306 -~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~--~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~-G 381 (511)
T 3usb_A 306 -ATAEATKALIEAGANVVKVGIGPGSICTTRVV--AGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAA-G 381 (511)
T ss_dssp -CSHHHHHHHHHHTCSEEEECSSCSTTCCHHHH--HCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHT-T
T ss_pred -ccHHHHHHHHHhCCCEEEECCCCccccccccc--cCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHh-C
Confidence 13456888999999999881 111110 1123456777766644 357999999999999999999986 9
Q ss_pred cceeeeehHHhhCCc
Q 013813 310 CEGVLSAESLLENPA 324 (436)
Q Consensus 310 aDgVmIGRgal~nP~ 324 (436)
||+||+|++++.-..
T Consensus 382 A~~V~vGs~~~~~~e 396 (511)
T 3usb_A 382 AHVVMLGSMFAGVAE 396 (511)
T ss_dssp CSEEEESTTTTTBTT
T ss_pred chhheecHHHhcCcc
Confidence 999999999866554
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-08 Score=101.63 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
.+++++.++|+. ++.|++.|.|++||+. +| ...+++...++++++++++ ++++.|+..-+++.+++++
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~-------~~--~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~ 218 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPP-------VS--WAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA 218 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTT-------ST--TCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCc-------cc--cccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence 689999988865 4669999999999864 22 3458899999999999987 6899999998999999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHHhhC
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+++.+++.|+++|- +. . .+.||+..+++++.+++||++.+.+.+ .++++++++...+|.|++--.-++.
T Consensus 219 ~~~~l~~~~i~~iE-------~P--~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 288 (382)
T 1rvk_A 219 LGRGLEKLGFDWIE-------EP--M-DEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGG 288 (382)
T ss_dssp HHHHHHTTTCSEEE-------CC--S-CTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTS
T ss_pred HHHHHHhcCCCEEe-------CC--C-ChhhHHHHHHHHhhCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCC
Confidence 99999999999873 21 1 135899999999999999999999999 9999999999889999986554443
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-08 Score=103.51 Aligned_cols=144 Identities=9% Similarity=0.135 Sum_probs=119.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
..|+..++.+.+++++.++|+. ++.||+.|.|++|+ +++...++++++++.+ ++++.++.+
T Consensus 130 ~v~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDan 193 (369)
T 2p8b_A 130 EFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT----------------NVKEDVKRIEAVRERVGNDIAIRVDVN 193 (369)
T ss_dssp CEECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred ceeeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 3455578888899999988864 56799999999873 4677888999998887 689999998
Q ss_pred cCCChhhHH-HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 234 VFPNLQDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 234 lg~~~~d~~-~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.+++.++++ ++++.+++.|+++|. +. . .+.||+..+++++.+++||++++.+.+.++++++++...+|+
T Consensus 194 ~~~~~~~a~~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~ 263 (369)
T 2p8b_A 194 QGWKNSANTLTALRSLGHLNIDWIE-------QP--V-IADDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAADK 263 (369)
T ss_dssp TTTBSHHHHHHHHHTSTTSCCSCEE-------CC--B-CTTCHHHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEE-------CC--C-CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCE
Confidence 899989999 999999999999873 21 1 146899999999999999999999999999999999888999
Q ss_pred eeeehHHhhCCccc
Q 013813 313 VLSAESLLENPALF 326 (436)
Q Consensus 313 VmIGRgal~nP~lf 326 (436)
|++--+-++..+-+
T Consensus 264 v~ik~~~~GGit~~ 277 (369)
T 2p8b_A 264 VNIKLMKCGGIYPA 277 (369)
T ss_dssp EEECHHHHTSHHHH
T ss_pred EEeecchhCCHHHH
Confidence 99987666555433
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-08 Score=103.10 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=121.0
Q ss_pred CCCEEEEec-CCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCCh-HHHHHHHHHHhccc--CccEEEE
Q 013813 157 DRPLFVQFC-ANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNL-PLVKSLVEKLALNL--NVPVSCK 231 (436)
Q Consensus 157 e~plivQL~-g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p-~~v~eIv~av~~~~--~iPVsVK 231 (436)
..|+...+. +.+++++.++|+. ++.||+.|.|++ ||. |+ ++ +...+++++|++.+ ++++.++
T Consensus 133 ~vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~-spv--------G~----~~~~~~~e~v~avr~a~G~d~~l~vD 199 (401)
T 2hzg_A 133 GKRPYASLLFGDTPQETLERARAARRDGFAAVKFGW-GPI--------GR----GTVAADADQIMAAREGLGPDGDLMVD 199 (401)
T ss_dssp CBEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES-TTT--------TS----SCHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ceEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC-CCC--------CC----CHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 345554444 6789999988864 567999999996 764 32 45 77788999998887 6899999
Q ss_pred eccCC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh-hCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 232 IRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 232 iRlg~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~-~~~iPVianGGI~s~eda~~~l~~t 308 (436)
.+.++ +.++++++++.+++.|+++|- +.. .+.||+..+++++ .+++||++.+.+.+.++++++++..
T Consensus 200 an~~~~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~~ 269 (401)
T 2hzg_A 200 VGQIFGEDVEAAAARLPTLDAAGVLWLE-------EPF---DAGALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYG 269 (401)
T ss_dssp CTTTTTTCHHHHHTTHHHHHHTTCSEEE-------CCS---CTTCHHHHHHHHTTCCSSEEEECTTCSSHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC---CccCHHHHHHHHhhCCCCCEEecCCcCCHHHHHHHHHCC
Confidence 99999 999999999999999999873 211 1468999999999 8999999999999999999999998
Q ss_pred CcceeeeehHHhhCCccchh
Q 013813 309 GCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 309 GaDgVmIGRgal~nP~lf~~ 328 (436)
.+|.|++-...++..+-+.+
T Consensus 270 ~~d~v~ik~~~~GGit~~~~ 289 (401)
T 2hzg_A 270 RIGFIQIDCGRIGGLGPAKR 289 (401)
T ss_dssp CCSEEEECHHHHTSHHHHHH
T ss_pred CCCEEEeCcchhCCHHHHHH
Confidence 89999998777766654433
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-08 Score=97.69 Aligned_cols=162 Identities=14% Similarity=0.205 Sum_probs=110.7
Q ss_pred CCCCEEEEecCCCH--HHHHHHHHHHc-CCCcEEEEe--cCCCch---hhhcCccccccc--CChHHHHHHHHHHhcc-c
Q 013813 156 EDRPLFVQFCANDP--EILLNAARRVE-PYCDYVDIN--LGCPQR---IARRGNYGAFLM--DNLPLVKSLVEKLALN-L 224 (436)
Q Consensus 156 ~e~plivQL~g~d~--e~~~~AA~~v~-~g~D~IdLN--~GCP~~---~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~-~ 224 (436)
....++.-|...+| +...+.++.++ .|+|.|||. ++-|.- .+.+-. -.+|. -+.+.+.++++++++. +
T Consensus 16 ~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~-~~AL~~G~~~~~~~~~v~~ir~~~~ 94 (267)
T 3vnd_A 16 DKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGAN-LRSLAAGTTSSDCFDIITKVRAQHP 94 (267)
T ss_dssp TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 45668888888877 88888887664 689999999 455551 111100 00111 2456788999999987 7
Q ss_pred CccEEEEeccCCCh---hhHHHHHHHHHHcCccEEEeccCcc-------------------------------------c
Q 013813 225 NVPVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTR-------------------------------------D 264 (436)
Q Consensus 225 ~iPVsVKiRlg~~~---~d~~~~ak~le~aG~d~I~VHgRt~-------------------------------------~ 264 (436)
++|+.+-.- ++. -....|++.+.++|+|.++++.-.. .
T Consensus 95 ~~Pivlm~Y--~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~ 172 (267)
T 3vnd_A 95 DMPIGLLLY--ANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGE 172 (267)
T ss_dssp TCCEEEEEC--HHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCC
T ss_pred CCCEEEEec--CcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCC
Confidence 899887521 121 1236788889999999988732110 0
Q ss_pred ------ccCCCCC-----c-cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 265 ------EKDGKKF-----R-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 265 ------~~~~~~g-----~-ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
...+.+| + ...+.++++++.+++||+..|||++++++.+.+.. |||+|.+|+++..
T Consensus 173 gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~-gADgvVVGSaiv~ 240 (267)
T 3vnd_A 173 GYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKA-GAAGAISGSAVVK 240 (267)
T ss_dssp SCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHT-TCSEEEECHHHHH
T ss_pred CcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHc-CCCEEEECHHHHH
Confidence 0011111 1 12577899999889999999999999999988876 9999999998763
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.7e-08 Score=99.55 Aligned_cols=141 Identities=13% Similarity=0.184 Sum_probs=114.8
Q ss_pred CEEEEecCCCHHHHHHHHH-HHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 159 PLFVQFCANDPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~-~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
|+..-+.+.+++++.++|+ .++ .||+.|.|++||+ +++...++++++++.+ ++++.++.+.
T Consensus 133 ~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 197 (370)
T 1nu5_A 133 PIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGAR---------------TPAQDLEHIRSIVKAVGDRASVRVDVNQ 197 (370)
T ss_dssp EBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGCEEEEECTT
T ss_pred EeeEEecCCCHHHHHHHHHHHHHhCCccEEEEecCCC---------------ChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 3334455678999988885 456 7999999999874 3456678888888876 4889999888
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++++++.+++.|+++|. +. . .+.||+..+++++.+++||++.+.+.+.++++++++...+|.|+
T Consensus 198 ~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ 267 (370)
T 1nu5_A 198 GWDEQTASIWIPRLEEAGVELVE-------QP--V-PRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFS 267 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEE-------CC--S-CTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhcCcceEe-------CC--C-CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999873 21 1 14689999999999999999999999999999999998899999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+--.-++...
T Consensus 268 ik~~~~GGit 277 (370)
T 1nu5_A 268 LKLCNMGGIA 277 (370)
T ss_dssp ECHHHHTSHH
T ss_pred EchhhcCCHH
Confidence 8755555444
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.6e-08 Score=100.64 Aligned_cols=139 Identities=10% Similarity=0.137 Sum_probs=116.9
Q ss_pred CCEEEEe-c-CCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 158 RPLFVQF-C-ANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 158 ~plivQL-~-g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
.|+...+ . +.+++++++.++. ++.|++.|.|++|| +++...+++++|++.+ ++++.|+.
T Consensus 139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~----------------~~~~d~~~v~avR~a~g~d~~l~vDa 202 (389)
T 3ozy_A 139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR----------------APRKDAANLRAMRQRVGADVEILVDA 202 (389)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence 5777777 4 6899999988864 56799999999987 4677788899999887 68999999
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHH-hhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK-NALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik-~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+.+++.++++++++.+++.|+++|. +. . .+.||+..++++ +.+++||++.+.+.+.++++++++...+|
T Consensus 203 n~~~~~~~A~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~~~d 272 (389)
T 3ozy_A 203 NQSLGRHDALAMLRILDEAGCYWFE-------EP--L-SIDDIEGHRILRAQGTPVRIATGENLYTRNAFNDYIRNDAID 272 (389)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCSEEE-------SC--S-CTTCHHHHHHHHTTCCSSEEEECTTCCHHHHHHHHHHTTCCS
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEE-------CC--C-CcccHHHHHHHHhcCCCCCEEeCCCCCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999983 21 1 135799999999 99999999999999999999999988899
Q ss_pred eeeeehHHhhC
Q 013813 312 GVLSAESLLEN 322 (436)
Q Consensus 312 gVmIGRgal~n 322 (436)
.|++--+..+.
T Consensus 273 ~v~ik~~~~GG 283 (389)
T 3ozy_A 273 VLQADASRAGG 283 (389)
T ss_dssp EECCCTTTSSC
T ss_pred EEEeCccccCC
Confidence 99986444433
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.4e-08 Score=96.09 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=97.1
Q ss_pred CCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
.|+++.+.+ .+.++. .+.|+++|+++.++|...... .|..+.+.++.+ +.+++.+++|+.++++.+.
T Consensus 22 ~~~i~~~~~------~~~a~~~~~~Ga~~i~~~e~v~~~~~~~--~G~~~~~~~~~i----~~i~~~~~~Pvi~~~~~~~ 89 (297)
T 2zbt_A 22 GGVIMDVTT------PEQAVIAEEAGAVAVMALERVPADIRAQ--GGVARMSDPKII----KEIMAAVSIPVMAKVRIGH 89 (297)
T ss_dssp TEEEEEESS------HHHHHHHHHHTCSEEEECSSCHHHHHHT--TCCCCCCCHHHH----HHHHTTCSSCEEEEEETTC
T ss_pred CCeeeeech------HHHHHHHHHCCCcEEEeccccchHHHhh--cCCccCCCHHHH----HHHHHhcCCCeEEEeccCC
Confidence 578887765 334433 355899999987777643222 255566776654 4556677899988876542
Q ss_pred ChhhHHHHHHHH---------------------------------------------HHcCccEEEeccC----------
Q 013813 237 NLQDTIKYAKML---------------------------------------------EDAGCSLLAVHGR---------- 261 (436)
Q Consensus 237 ~~~d~~~~ak~l---------------------------------------------e~aG~d~I~VHgR---------- 261 (436)
.+.++.+ .++|+|+|.+||-
T Consensus 90 -----~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~ 164 (297)
T 2zbt_A 90 -----FVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAV 164 (297)
T ss_dssp -----HHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHH
T ss_pred -----HHHHHHHHHCCCCEEeeeCCCChHHHHHHHHHhCCCceEEeecCCHHHHHHHHHcCCCEEEEcccccCcchHHHH
Confidence 2223333 4445555544421
Q ss_pred ----------------cccccC--CCCCccCHHHHHHHHhhCCCcEE--EccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 262 ----------------TRDEKD--GKKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 262 ----------------t~~~~~--~~~g~ad~~~i~~ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+..... ....+.+++.++++++.+++||+ +.|||.+.+++.++++. |||+|++|++++.
T Consensus 165 ~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~a-GadgvvvGsai~~ 243 (297)
T 2zbt_A 165 RHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHL-GMDGVFVGSGIFK 243 (297)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHT-TCSEEEECGGGGG
T ss_pred hhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHc-CCCEEEEchHHhC
Confidence 000000 00013467889999998899998 99999999999999986 9999999999986
Q ss_pred CC
Q 013813 322 NP 323 (436)
Q Consensus 322 nP 323 (436)
.+
T Consensus 244 ~~ 245 (297)
T 2zbt_A 244 SG 245 (297)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.6e-08 Score=98.69 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=116.0
Q ss_pred CCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+..++.+.+++++.+.|+. ++.||+.|.|++||+ +++...++++++++.+ ++++.++.+.
T Consensus 130 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~d~~~v~avr~a~g~~~~l~vDan~ 194 (366)
T 1tkk_A 130 LETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQ 194 (366)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 445567778899999888854 566999999998872 4677788888988877 6899999988
Q ss_pred CCChhhHHHHHHHHHH--cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 235 FPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 235 g~~~~d~~~~ak~le~--aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
+++.++++++++.+++ .|+++|- +. . .+.||+..+++++.+++||++.+.+.+.+++.++++...+|.
T Consensus 195 ~~~~~~a~~~~~~l~~~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~ 264 (366)
T 1tkk_A 195 GWRPKEAVTAIRKMEDAGLGIELVE-------QP--V-HKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADL 264 (366)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEEE-------CC--S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCCSE
T ss_pred CCCHHHHHHHHHHHhhcCCCceEEE-------CC--C-CcccHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHhCCCCE
Confidence 9999999999999999 8888772 21 1 145899999999999999999999999999999999888999
Q ss_pred eeeehHHhhCC
Q 013813 313 VLSAESLLENP 323 (436)
Q Consensus 313 VmIGRgal~nP 323 (436)
|++--.-.+..
T Consensus 265 v~ik~~~~GGi 275 (366)
T 1tkk_A 265 INIKLMKAGGI 275 (366)
T ss_dssp EEECHHHHTSH
T ss_pred EEeehhhhcCH
Confidence 99865544433
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-08 Score=98.17 Aligned_cols=140 Identities=11% Similarity=0.114 Sum_probs=117.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 156 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
...|+...+.+.+++++.++|+. ++.||+.|.|++|. +++...++++++++.+ ++++.++.
T Consensus 134 ~~vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDa 197 (371)
T 2ps2_A 134 TRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG----------------EPVTDAKRITAALANQQPDEFFIVDA 197 (371)
T ss_dssp SCEEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS----------------CHHHHHHHHHHHTTTCCTTCEEEEEC
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 34567777888899999988865 46799999999873 3678889999999988 58999999
Q ss_pred ccCCChhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 233 RVFPNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+.+++.++++++++.+ ++.|+ +|. + .. + ||+..+++++.+++||++.+.+.+.++++++++...+|
T Consensus 198 n~~~~~~~a~~~~~~l~~~~~i-~iE-------~--P~--~-~~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d 264 (371)
T 2ps2_A 198 NGKLSVETALRLLRLLPHGLDF-ALE-------A--PC--A-TWRECISLRRKTDIPIIYDELATNEMSIVKILADDAAE 264 (371)
T ss_dssp TTBCCHHHHHHHHHHSCTTCCC-EEE-------C--CB--S-SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHHTCCS
T ss_pred CCCcCHHHHHHHHHHHHhhcCC-cCc-------C--Cc--C-CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCC
Confidence 8899999999999999 99998 762 2 12 3 89999999999999999999999999999999998899
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
.|++--+-++...
T Consensus 265 ~v~ik~~~~GGit 277 (371)
T 2ps2_A 265 GIDLKISKAGGLT 277 (371)
T ss_dssp EEEEEHHHHTSHH
T ss_pred EEEechhhcCCHH
Confidence 9999766555443
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-08 Score=99.61 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
+.+++++.++|+. ++.||+.|.|+.|+. .++...++++++++.+ ++++.|+...+++.++++
T Consensus 147 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~---------------~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~ 211 (391)
T 2qgy_A 147 KKDTNDYLRQIEKFYGKKYGGIKIYPMLD---------------SLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTK 211 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCSCEEECCCCS---------------SHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------hHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHH
Confidence 5789999988865 567999999997731 1578889999999877 689999999899999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++++.+++.|+++|- +. . .+.+|+..+++++.+++||++.+.+.++++++++++...+|.|++--+-++.
T Consensus 212 ~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 281 (391)
T 2qgy_A 212 SFLKEVSSFNPYWIE-------EP--V-DGENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGG 281 (391)
T ss_dssp HHHHHHGGGCCSEEE-------CS--S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSC
T ss_pred HHHHHHHhcCCCeEe-------CC--C-ChhhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCC
Confidence 999999999999873 11 1 1358999999999999999999999999999999998889999986554444
Q ss_pred Cc
Q 013813 323 PA 324 (436)
Q Consensus 323 P~ 324 (436)
..
T Consensus 282 it 283 (391)
T 2qgy_A 282 LI 283 (391)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-08 Score=100.41 Aligned_cols=147 Identities=16% Similarity=0.248 Sum_probs=118.1
Q ss_pred CCCEEEE-ec-C-C-------CHHHHHHHHHH-HcCCCcEEEEec------CC----CchhhhcCccccccc-CChHHHH
Q 013813 157 DRPLFVQ-FC-A-N-------DPEILLNAARR-VEPYCDYVDINL------GC----PQRIARRGNYGAFLM-DNLPLVK 214 (436)
Q Consensus 157 e~plivQ-L~-g-~-------d~e~~~~AA~~-v~~g~D~IdLN~------GC----P~~~~~~~~~Gs~Ll-~~p~~v~ 214 (436)
..|+... +. | . +++++.++|+. ++.||+.|.|+. |+ |..+ ..||+... ++++...
T Consensus 129 ~vp~y~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~---~~~GG~~~~~~~~~~~ 205 (410)
T 2gl5_A 129 KLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRN---RNYSGLLLADQLKMGE 205 (410)
T ss_dssp SEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCC---GGGGSCCCHHHHHHHH
T ss_pred ceeEeEecccCCccccccccCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccccccc---ccccCccchhHHHHHH
Confidence 3456555 65 4 4 89999988864 567999999996 66 3332 24777664 4678888
Q ss_pred HHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc
Q 013813 215 SLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 292 (436)
Q Consensus 215 eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian 292 (436)
+++++|++.+ ++++.++..-+++.++++++++.+++.|+++|. ++ . .+.||+..+++++.+++||++.
T Consensus 206 e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE------~P---~-~~~~~~~~~~l~~~~~iPIa~d 275 (410)
T 2gl5_A 206 ARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYE------EP---I-HPLNSDNMQKVSRSTTIPIATG 275 (410)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEE------CS---S-CSSCHHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEE------CC---C-ChhhHHHHHHHHhhCCCCEEec
Confidence 9999999887 589999988889999999999999999998773 11 1 1357999999999999999999
Q ss_pred cCCCCHHHHHHHHHhcCcceeeee
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+.+.+.++++++++...+|.|++-
T Consensus 276 E~~~~~~~~~~~i~~~~~d~v~ik 299 (410)
T 2gl5_A 276 ERSYTRWGYRELLEKQSIAVAQPD 299 (410)
T ss_dssp TTCCTTHHHHHHHHTTCCSEECCC
T ss_pred CCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999998789999863
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=9.9e-08 Score=91.74 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=108.7
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHcC---CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 157 DRPLFVQFCA-NDPEILLNAARRVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 157 e~plivQL~g-~d~e~~~~AA~~v~~---g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
+..+..+-.| .+.++....|++..+ +.+.|-|-.-. + --.++.|+....+..+.+.+. ++.|..-+
T Consensus 73 ~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~-------d--~~~llpD~~~tv~aa~~L~~~-Gf~Vlpy~ 142 (265)
T 1wv2_A 73 RYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLA-------D--QKTLFPNVVETLKAAEQLVKD-GFDVMVYT 142 (265)
T ss_dssp TSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBS-------C--TTTCCBCHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred CCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeec-------C--ccccCcCHHHHHHHHHHHHHC-CCEEEEEe
Confidence 4556667665 578999999998865 56888776421 1 124677888877777776543 44444221
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.+...++++++++|++.|..+|..... +.|-.++++|+.+++..++|||+.|||.+++|+..+++. |||+
T Consensus 143 ------~dd~~~akrl~~~G~~aVmPlg~pIGs---G~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeL-GAdg 212 (265)
T 1wv2_A 143 ------SDDPIIARQLAEIGCIAVMPLAGLIGS---GLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMEL-GCEA 212 (265)
T ss_dssp ------CSCHHHHHHHHHSCCSEEEECSSSTTC---CCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHH-TCSE
T ss_pred ------CCCHHHHHHHHHhCCCEEEeCCccCCC---CCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHc-CCCE
Confidence 112567999999999999888774332 233568999999999999999999999999999999997 9999
Q ss_pred eeeehHHhh
Q 013813 313 VLSAESLLE 321 (436)
Q Consensus 313 VmIGRgal~ 321 (436)
|++|+++..
T Consensus 213 VlVgSAI~~ 221 (265)
T 1wv2_A 213 VLMNTAIAH 221 (265)
T ss_dssp EEESHHHHT
T ss_pred EEEChHHhC
Confidence 999999854
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-08 Score=92.94 Aligned_cols=138 Identities=14% Similarity=0.195 Sum_probs=92.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
+.|+++.+.+.+.+++.+.++.+. .|++.|+++++||.. .+.++.+++.+ ++++.+-
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~------------------~~~i~~ir~~~~~~~~ig~~-- 68 (205)
T 1wa3_A 9 KHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDA------------------DTVIKELSFLKEKGAIIGAG-- 68 (205)
T ss_dssp HHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTH------------------HHHHHHTHHHHHTTCEEEEE--
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------HHHHHHHHHHCCCCcEEEec--
Confidence 368999999999999999997765 479999999988742 23444454443 2333222
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcc-------------------ccc--------------CCCCCccCHHHHHH
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------------------DEK--------------DGKKFRADWNAIKA 280 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~-------------------~~~--------------~~~~g~ad~~~i~~ 280 (436)
.-.+.+ -++.+.++|+|+| +++... ... ........++.+++
T Consensus 69 ~v~~~~----~~~~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~ 143 (205)
T 1wa3_A 69 TVTSVE----QCRKAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKA 143 (205)
T ss_dssp SCCSHH----HHHHHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHH
T ss_pred ccCCHH----HHHHHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHH
Confidence 111222 2445556777777 554332 000 00000123567788
Q ss_pred HHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 281 VKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 281 ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+++.+ ++||++.|||+ .+++.++++. |+|+|.+|++++.
T Consensus 144 l~~~~~~~pvia~GGI~-~~~~~~~~~~-Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 144 MKGPFPNVKFVPTGGVN-LDNVCEWFKA-GVLAVGVGSALVK 183 (205)
T ss_dssp HHTTCTTCEEEEBSSCC-TTTHHHHHHH-TCSCEEECHHHHC
T ss_pred HHHhCCCCcEEEcCCCC-HHHHHHHHHC-CCCEEEECccccC
Confidence 88877 89999999997 7899999986 9999999999987
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.5e-08 Score=93.88 Aligned_cols=152 Identities=11% Similarity=0.139 Sum_probs=110.1
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc--
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV-- 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl-- 234 (436)
.++-+|++|.= ..+.++.+++..|+|-|-|| +...++|+++.++.+...... -+-+.+|.+-
T Consensus 74 ~~~pl~vGGGI-rs~e~~~~~l~~GadkVii~--------------t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~ 138 (243)
T 4gj1_A 74 VSVNLQVGGGI-RSKEEVKALLDCGVKRVVIG--------------SMAIKDATLCLEILKEFGSEAIVLALDTILKEDY 138 (243)
T ss_dssp CCSEEEEESSC-CCHHHHHHHHHTTCSEEEEC--------------TTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSE
T ss_pred cCCCeEecccc-ccHHHHHHHHHcCCCEEEEc--------------cccccCCchHHHHHhcccCceEEEEEEEEeCCCC
Confidence 44568887753 23445556778899999887 556789999999998875432 2233333221
Q ss_pred -----CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHH
Q 013813 235 -----FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 235 -----g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l 305 (436)
+|. ..+..++++.+++.|+..|.++...++++.. .+|++.++.+++.+ ++|||++|||.+.+|++++
T Consensus 139 ~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~---G~d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l- 214 (243)
T 4gj1_A 139 VVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQ---GVNVRLYKLIHEIFPNICIQASGGVASLKDLENL- 214 (243)
T ss_dssp EEC--------CCBHHHHHHHHHTTTCCEEEEEETTC--------CCCHHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-
T ss_pred EEEecCceecccchHHHHHHHHhhcCCcEEEeeeeccccccc---CCCHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-
Confidence 221 2356889999999999999999888876544 47999999999876 7999999999999999885
Q ss_pred HhcCcceeeeehHHhhCCccchhh
Q 013813 306 EETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+ .+++||.+|++++.+-.-+.++
T Consensus 215 ~-~~~~gvivg~Al~~g~i~l~ea 237 (243)
T 4gj1_A 215 K-GICSGVIVGKALLDGVFSVEEG 237 (243)
T ss_dssp T-TTCSEEEECHHHHTTSSCHHHH
T ss_pred H-ccCchhehHHHHHCCCCCHHHH
Confidence 4 4799999999998765544443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.9e-09 Score=98.51 Aligned_cols=89 Identities=19% Similarity=0.331 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+..++++.++++|++.|+++..+.... ....+++.++++++.+++||+++|||.++++++++++. |||+|++|++
T Consensus 30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~-Gad~V~lg~~ 105 (253)
T 1thf_D 30 GDPVELGKFYSEIGIDELVFLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILR-GADKVSINTA 105 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSS---HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHT-TCSEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEECCchhhc---CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc-CCCEEEEChH
Confidence 5788899999999999999997664321 12467888999999999999999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.+|+++.++..
T Consensus 106 ~l~~p~~~~~~~~ 118 (253)
T 1thf_D 106 AVENPSLITQIAQ 118 (253)
T ss_dssp HHHCTHHHHHHHH
T ss_pred HHhChHHHHHHHH
Confidence 9999998877653
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-07 Score=90.98 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=107.8
Q ss_pred CCCEEEEecCCCH--HHHHHHHHHHc-CCCcEEEEec--CCCch---hhh-----cCcccccccCChHHHHHHHHHHhcc
Q 013813 157 DRPLFVQFCANDP--EILLNAARRVE-PYCDYVDINL--GCPQR---IAR-----RGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 157 e~plivQL~g~d~--e~~~~AA~~v~-~g~D~IdLN~--GCP~~---~~~-----~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
+..++.-|...+| +...+.++.++ .|+|.|+|+. +-|.- .+. .-..| -+.....++++++++.
T Consensus 16 ~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G----~~~~~~~~~v~~ir~~ 91 (268)
T 1qop_A 16 EGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAG----VTPAQCFEMLAIIREK 91 (268)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhc
Confidence 4567888888887 88888887664 5899999985 33320 000 00011 1456677899999988
Q ss_pred -cCccEEEEeccCCCh---hhHHHHHHHHHHcCccEEEeccCccc---------------------c-------------
Q 013813 224 -LNVPVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRD---------------------E------------- 265 (436)
Q Consensus 224 -~~iPVsVKiRlg~~~---~d~~~~ak~le~aG~d~I~VHgRt~~---------------------~------------- 265 (436)
+++||.+=. .++. ....++++.+.++|+|+|++|.-+.+ +
T Consensus 92 ~~~~Pv~lm~--y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~ 169 (268)
T 1qop_A 92 HPTIPIGLLM--YANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASY 169 (268)
T ss_dssp CSSSCEEEEE--CHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH
T ss_pred CCCCCEEEEE--cccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh
Confidence 789986611 0110 12257788888899998887532210 0
Q ss_pred ---------cCCCCC------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 266 ---------KDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 266 ---------~~~~~g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
..+.+| ....+.++++++.+++||+..|||+|++++.+++.. |||+|++|++++.
T Consensus 170 ~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~a-gAD~vVVGSai~~ 239 (268)
T 1qop_A 170 GRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRA-GAAGAISGSAIVK 239 (268)
T ss_dssp CCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHT-TCSEEEECHHHHH
T ss_pred CCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHc-CCCEEEEChHHhh
Confidence 001122 123688999999889999999999999999998886 9999999999865
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=97.04 Aligned_cols=164 Identities=12% Similarity=0.176 Sum_probs=105.9
Q ss_pred CCCCEEEEecCCC--HHHHHHHHHHH-cCCCcEEEEec--CCCch---hhhcCccccccc--CChHHHHHHHHHHhcc-c
Q 013813 156 EDRPLFVQFCAND--PEILLNAARRV-EPYCDYVDINL--GCPQR---IARRGNYGAFLM--DNLPLVKSLVEKLALN-L 224 (436)
Q Consensus 156 ~e~plivQL~g~d--~e~~~~AA~~v-~~g~D~IdLN~--GCP~~---~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~-~ 224 (436)
....++.=|...+ .+...+.++.+ +.|+|.|||.+ +-|.- ...+ ..-.+|. -+.+.+.++++++++. .
T Consensus 18 ~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~-a~~rAL~~G~~~~~~~~~v~~~r~~~~ 96 (271)
T 3nav_A 18 QQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQG-ANLRALAAKTTPDICFELIAQIRARNP 96 (271)
T ss_dssp TBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHH-HHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHH-HHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 3445666666555 57888888766 45899999995 44541 1111 0001111 2456788899999877 7
Q ss_pred CccEEEEeccCC-ChhhHHHHHHHHHHcCccEEEeccC--------------------------ccc-----------c-
Q 013813 225 NVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGR--------------------------TRD-----------E- 265 (436)
Q Consensus 225 ~iPVsVKiRlg~-~~~d~~~~ak~le~aG~d~I~VHgR--------------------------t~~-----------~- 265 (436)
++|+.+-.-..+ ..-...+|++.+.++|+|++++..- +.. .
T Consensus 97 ~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gf 176 (271)
T 3nav_A 97 ETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGY 176 (271)
T ss_dssp TSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSC
T ss_pred CCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCe
Confidence 899987521110 0012356888888888888776110 100 0
Q ss_pred -----cCCCCCc------cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 266 -----KDGKKFR------ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 266 -----~~~~~g~------ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
..+.+|. ...++++++++.+++||+..|||++++++.+.+.. |||||.||+++..
T Consensus 177 iY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~-gADgvIVGSAiv~ 242 (271)
T 3nav_A 177 TYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEA-GAAGAISGSAVVK 242 (271)
T ss_dssp EEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHT-TCSEEEESHHHHH
T ss_pred EEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc-CCCEEEECHHHHH
Confidence 0111111 12467889999889999999999999999988876 9999999999863
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=97.69 Aligned_cols=89 Identities=21% Similarity=0.341 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++++.++++|++.|.++....... ....+++.++++++.+++||+++|||.+.++++++++. |||+|++|++
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~-Gad~V~lg~~ 106 (252)
T 1ka9_F 31 GDPVEAARAYDEAGADELVFLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLS-GADKVSVNSA 106 (252)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTT---CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHH-TCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---CccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc-CCCEEEEChH
Confidence 5788999999999999999987654321 12456888999999999999999999999999999986 8999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.+|+++.++..
T Consensus 107 ~l~~p~~~~~~~~ 119 (252)
T 1ka9_F 107 AVRRPELIRELAD 119 (252)
T ss_dssp HHHCTHHHHHHHH
T ss_pred HHhCcHHHHHHHH
Confidence 9999998887654
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.3e-08 Score=99.92 Aligned_cols=140 Identities=12% Similarity=0.151 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHH-HcCCCcEEEEecCCCch-h-hhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhh
Q 013813 166 ANDPEILLNAARR-VEPYCDYVDINLGCPQR-I-ARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQD 240 (436)
Q Consensus 166 g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~-~-~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d 240 (436)
+.+++++.++|+. ++.||+.|.|+.||+.. . ..+..||+...++++...+++++|++.+ ++++.++..-+++.++
T Consensus 135 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~ 214 (392)
T 2poz_A 135 ADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDE 214 (392)
T ss_dssp CCSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHH
Confidence 4689999888854 56799999999997542 0 0022456666677888999999999887 5899999888899999
Q ss_pred HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++++++.+++.|+++|- +. . .+.||+..+++++.+++||++.+.+.+.++++++++...+|.|++
T Consensus 215 a~~~~~~l~~~~i~~iE-------~P--~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 279 (392)
T 2poz_A 215 TIRFCRKIGELDICFVE-------EP--C-DPFDNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQP 279 (392)
T ss_dssp HHHHHHHHGGGCEEEEE-------CC--S-CTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTCCSEECC
T ss_pred HHHHHHHHHhcCCCEEE-------CC--C-CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 99999999999998773 11 1 135899999999999999999999999999999999878999987
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-07 Score=93.15 Aligned_cols=123 Identities=9% Similarity=0.096 Sum_probs=104.5
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.++|+. ++.||+.|.|++|+ .+++...+++++|++.+ ++++.+...-+++.++++++
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~ 209 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGH---------------RDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTK 209 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCC---------------SSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCC---------------CCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHH
Confidence 89999888854 56799999999886 24567789999999988 58899998888999999999
Q ss_pred HHHHHH--cCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~--aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+++ .|+.+|- +. . .+.||+..+++++.+ ++||++.+.+ +.++++++++...+|.|++.
T Consensus 210 ~~~l~~~g~~i~~iE-------qP--~-~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 210 LVAIREAGHDLLWVE-------DP--I-LRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp HHHHHHTTCCCSEEE-------SC--B-CTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHhcCCCceEEe-------CC--C-CCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 999999 7776652 21 1 135899999999999 9999999999 99999999999889999997
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-08 Score=92.77 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=102.1
Q ss_pred CCCCEEEEecCCCH--HHHHHHHHHH-cCCCcEEEEecCCCchhhhcCc-----cccccc--CChHHHHHHHHHHhcccC
Q 013813 156 EDRPLFVQFCANDP--EILLNAARRV-EPYCDYVDINLGCPQRIARRGN-----YGAFLM--DNLPLVKSLVEKLALNLN 225 (436)
Q Consensus 156 ~e~plivQL~g~d~--e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~-----~Gs~Ll--~~p~~v~eIv~av~~~~~ 225 (436)
.+..++.-|...++ +.+.+.++.+ +.|+|.|+|+.-|.-+.. .|. .-.++. -+++...++++++++.++
T Consensus 16 ~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~-dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~ 94 (262)
T 1rd5_A 16 GKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYI-DGPIIQASVARALASGTTMDAVLEMLREVTPELS 94 (262)
T ss_dssp TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTT-SCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCS
T ss_pred CCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCccc-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 34567788877777 7788878665 568999999875542111 000 000001 267888899999999889
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccC--------------------------ccc---------------
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR--------------------------TRD--------------- 264 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgR--------------------------t~~--------------- 264 (436)
+||.+-.+.. .... ...+.+.++|+|++++|.- +..
T Consensus 95 ~Pv~~m~~~~--~~~~-~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~ 171 (262)
T 1rd5_A 95 CPVVLLSYYK--PIMF-RSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVY 171 (262)
T ss_dssp SCEEEECCSH--HHHS-CCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEE
T ss_pred CCEEEEecCc--HHHH-HHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEE
Confidence 9998853221 0000 0011244555555554321 100
Q ss_pred --ccCCCCC------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 265 --EKDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 265 --~~~~~~g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
...+.+| +...+.++++++.+++||++.|||+|++++.++++. |||+|.+|++++.
T Consensus 172 ~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~-GAdgvvVGSai~~ 235 (262)
T 1rd5_A 172 LVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQW-GADGVIIGSAMVR 235 (262)
T ss_dssp EECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHT-TCSEEEECHHHHH
T ss_pred EecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHc-CCCEEEEChHHHh
Confidence 0011111 113467889998889999999999999999999885 9999999999764
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-07 Score=95.93 Aligned_cols=124 Identities=11% Similarity=0.109 Sum_probs=106.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.++|+. ++.||+.|.|++|- .+++...+++++|++.+ ++++.++..-+++.++++++
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~ 226 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQ---------------PDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRM 226 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCC---------------SCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHH
Confidence 89999988865 56799999998651 24788889999999886 58999998889999999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+++.|+++|. +. . .+.+|+..+++++.+++||++.+.+.++++++++++...||.|++-
T Consensus 227 ~~~l~~~~i~~iE-------~P--~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 227 CRIFEPFNLVWIE-------EP--L-DAYDHEGHAALALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp HHHHGGGCCSCEE-------CC--S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHhhCCCEEE-------CC--C-CcccHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 9999999999873 21 1 1358999999999999999999999999999999998889999874
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=96.03 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=108.9
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEec------CCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCCh
Q 013813 168 DPEILLNAARR-VEPYCDYVDINL------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL 238 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~------GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~ 238 (436)
+++++.++|+. ++.||+.|.|+. |++... ...|....++++...+++++|++++ ++++.++..-+++.
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s---~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~ 222 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGV---FLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDL 222 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTC---CCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccC---cccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH
Confidence 89999888864 567999999996 664211 1112222345677889999999877 58999998888999
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++++++++.+++.|+++|- +. . .+.||+..+++++.+++||++.+.+.+.++++++++...+|.|++-
T Consensus 223 ~~ai~~~~~l~~~~i~~iE-------~P--~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 290 (403)
T 2ox4_A 223 VSAIQFAKAIEEFNIFFYE-------EI--N-TPLNPRLLKEAKKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPD 290 (403)
T ss_dssp HHHHHHHHHHGGGCEEEEE-------CC--S-CTTSTHHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHHHHHHHhhCCCEEe-------CC--C-ChhhHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999998873 11 1 1357999999999999999999999999999999998789999874
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-07 Score=90.57 Aligned_cols=53 Identities=26% Similarity=0.496 Sum_probs=46.7
Q ss_pred ccCHHHHHHHHhhCCCcEE--EccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 272 RADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
..+++.++++++.+++||+ +.|||.+++|+.++++. |||+|++|++++..+..
T Consensus 193 ~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~-GAdgVlVGsai~~a~dp 247 (297)
T 4adt_A 193 RAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQL-GMDGVFVGSGIFESENP 247 (297)
T ss_dssp TCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHT-TCSCEEESHHHHTSSCH
T ss_pred CCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHc-CCCEEEEhHHHHcCCCH
Confidence 4578889999998888987 99999999999999986 99999999999975543
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.5e-07 Score=87.24 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=113.8
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~AA~~v~ 180 (436)
++|++++.--.-+-..+.....+.|++++-..+=.++....+.......++ .-..+++.+..+ .++++....++.+.
T Consensus 12 ~~~~~~~t~g~p~~~~~~~~l~~~Gad~ielg~pr~~~~g~~~~~~~~~l~--~~~~~~~pn~~~~~~~~~~~~f~~~a~ 89 (264)
T 1xm3_A 12 QSRLLLGTGKYPSFDIQKEAVAVSESDILTFAVRRMNIFEASQPNFLEQLD--LSKYTLLPNTAGASTAEEAVRIARLAK 89 (264)
T ss_dssp SCCEEEECSCSSCHHHHHHHHHHHTCSEEEEETTSSTTC-------CTTCC--GGGSEEEEECTTCSSHHHHHHHHHHHH
T ss_pred cCCCEEEecCCCCHHHHHHHHHHcCCeEEEEcccccccCCCCHHHHHHHHH--hcCCeEcCCccccCCHHHHHHHHHHHH
Confidence 678888854443433555555667999863222001100001111111111 123566678877 77887665555553
Q ss_pred -C-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEE
Q 013813 181 -P-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 181 -~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I 256 (436)
. +.+.|.++.-. +. ..+. +...++++.+++.+ ++.+..- ...+. +.++.+.+.|+++|
T Consensus 90 ~agg~~~i~l~i~~-------d~--~~~~---~e~~~~~~~a~~~~~~g~~vi~~--~~~~~----~~a~~~~~~gad~v 151 (264)
T 1xm3_A 90 ASGLCDMIKVEVIG-------CS--RSLL---PDPVETLKASEQLLEEGFIVLPY--TSDDV----VLARKLEELGVHAI 151 (264)
T ss_dssp HTTCCSSEEECCBC-------CT--TTCC---BCHHHHHHHHHHHHHTTCCEEEE--ECSCH----HHHHHHHHHTCSCB
T ss_pred HcCCCCeEEEeecC-------CC--cccc---cchHHHHHHHHHHHCCCeEEEEE--cCCCH----HHHHHHHHhCCCEE
Confidence 3 46777777511 00 0011 22345555554432 3333321 11222 34777888999998
Q ss_pred EeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 257 AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 257 ~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
...+...... .+..+++.++.+++..++||++.|||.+++|+.++++. |||+|.||++++..+.
T Consensus 152 ~~~~~~~Gt~---~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~-GAdgViVGSAi~~a~d 215 (264)
T 1xm3_A 152 MPGASPIGSG---QGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMEL-GADGVLLNTAVSGADD 215 (264)
T ss_dssp EECSSSTTCC---CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHT-TCSEEEESHHHHTSSS
T ss_pred EECCcccCCC---CCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHc-CCCEEEEcHHHhCCCC
Confidence 3323221111 11235788999999889999999999999999999986 9999999999886554
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-07 Score=94.50 Aligned_cols=135 Identities=15% Similarity=0.235 Sum_probs=110.8
Q ss_pred CCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+...+...+++++.++|+. ++.||+.|.|+.|+ +++...+++++|++.+ ++++.++..-
T Consensus 135 vp~~~~~g~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~e~v~avR~a~g~d~~l~vDan~ 198 (397)
T 2qde_A 135 IPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGG----------------PLKADIAMVAEVRRAVGDDVDLFIDING 198 (397)
T ss_dssp EEBCEECCCSCHHHHHHHHHHHHHHTCSCEEEECCS----------------CHHHHHHHHHHHHHHHCTTSCEEEECTT
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhhhhheeecccC----------------CHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 344444544689999888864 46699999999763 4577788889998886 5899999888
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++++++.+++.|+++|- +. . .+.||+..+++++.+++||++.+.+.+.++++++++...+|.|+
T Consensus 199 ~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ 268 (397)
T 2qde_A 199 AWTYDQALTTIRALEKYNLSKIE-------QP--L-PAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLM 268 (397)
T ss_dssp CCCHHHHHHHHHHHGGGCCSCEE-------CC--S-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEE-------CC--C-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEE
Confidence 99999999999999999999873 21 1 13589999999999999999999999999999999988899999
Q ss_pred eehH
Q 013813 315 SAES 318 (436)
Q Consensus 315 IGRg 318 (436)
+--.
T Consensus 269 ik~~ 272 (397)
T 2qde_A 269 IKTQ 272 (397)
T ss_dssp ECHH
T ss_pred Eecc
Confidence 8533
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4e-07 Score=93.74 Aligned_cols=146 Identities=10% Similarity=0.051 Sum_probs=117.0
Q ss_pred CCCCEEEE-ecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEE
Q 013813 156 EDRPLFVQ-FCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 231 (436)
Q Consensus 156 ~e~plivQ-L~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVK 231 (436)
...|+... +...+++++++.|+. ++.||+.|.|++|+.-. + |+ ++++...+++++|++.+ ++++.|.
T Consensus 166 ~~v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~----d--g~---~~~~~die~v~avReavG~d~~L~vD 236 (412)
T 3stp_A 166 DRIPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPK----D--GM---PGMRENLKRVEAVREVIGYDNDLMLE 236 (412)
T ss_dssp SSEEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGG----G--HH---HHHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcc----c--cc---chHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 34456555 355789999988865 56799999999988521 1 21 35677788899999887 5899999
Q ss_pred eccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 232 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 232 iRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
...+++.++++++++.+++.|+++|- +... +.|++..+++++.+++||++.+.+.+.++++++++...+|
T Consensus 237 aN~~~~~~~Ai~~~~~Le~~~i~~iE-------eP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~li~~~a~D 306 (412)
T 3stp_A 237 CYMGWNLDYAKRMLPKLAPYEPRWLE-------EPVI---ADDVAGYAELNAMNIVPISGGEHEFSVIGCAELINRKAVS 306 (412)
T ss_dssp CTTCSCHHHHHHHHHHHGGGCCSEEE-------CCSC---TTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEE-------CCCC---cccHHHHHHHHhCCCCCEEeCCCCCCHHHHHHHHHcCCCC
Confidence 99899999999999999999999883 2111 3478999999999999999999999999999999987899
Q ss_pred eeeeehHHh
Q 013813 312 GVLSAESLL 320 (436)
Q Consensus 312 gVmIGRgal 320 (436)
.|++--+-.
T Consensus 307 ~v~ik~~~~ 315 (412)
T 3stp_A 307 VLQYDTNRV 315 (412)
T ss_dssp EECCCHHHH
T ss_pred EEecChhhc
Confidence 998764433
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-07 Score=93.44 Aligned_cols=124 Identities=11% Similarity=0.081 Sum_probs=105.7
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.++|+. ++.||+.|.|+.|. .+++...+++++|++.+ ++++.++..-+++.++++++
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~ 239 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQ---------------PNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRM 239 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCC---------------SCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 89999888854 56799999999763 24677888999998886 58999999889999999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+++.|+++|- +. . .+.||+..+++++.+++||++.+.+.+.++++++++...+|.|++-
T Consensus 240 ~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 301 (398)
T 2pp0_A 240 GRKMEQFNLIWIE-------EP--L-DAYDIEGHAQLAAALDTPIATGEMLTSFREHEQLILGNASDFVQPD 301 (398)
T ss_dssp HHHHGGGTCSCEE-------CC--S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHHcCCceee-------CC--C-ChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999873 11 1 1358999999999999999999999999999999998889999874
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-07 Score=94.67 Aligned_cols=144 Identities=14% Similarity=0.106 Sum_probs=116.0
Q ss_pred CCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccc-cccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 167 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGA-FLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 167 ~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs-~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
.+++++++.|+ .++.||..|.+++|||.... .|. ...++++...+++++|++.+ ++++.|+..-+++.++++
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~----~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~ 220 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR----GGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAI 220 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT----CCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc----cCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHH
Confidence 68999988885 46779999999999997432 222 12235677888999999887 589999988889999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++++.+++.|+++|. ++. .+.|++..+++++.+++||++.+.+.+.++++++++...+|.|++--+-.+.
T Consensus 221 ~~~~~Le~~~i~~iE------eP~----~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GG 290 (433)
T 3rcy_A 221 RLGQAIEPYSPLWYE------EPV----PPDNVGAMAQVARAVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGG 290 (433)
T ss_dssp HHHHHHGGGCCSEEE------CCS----CTTCHHHHHHHHHHSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTH
T ss_pred HHHHHhhhcCCCEEE------CCC----ChhhHHHHHHHHhccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCC
Confidence 999999999999884 111 1347899999999999999999999999999999998889999877555444
Q ss_pred Cc
Q 013813 323 PA 324 (436)
Q Consensus 323 P~ 324 (436)
..
T Consensus 291 it 292 (433)
T 3rcy_A 291 IW 292 (433)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-07 Score=93.42 Aligned_cols=134 Identities=18% Similarity=0.232 Sum_probs=110.0
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEec----CCCchhhhcCccccccc--CChHHHHHHHHHHhccc--CccEEEEeccCCCh
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINL----GCPQRIARRGNYGAFLM--DNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL 238 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~----GCP~~~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~ 238 (436)
++++++++|+ .++.||+.|.++. |+.... ||+.+. ++++...+++++|++++ ++++.+...-+++.
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~-----~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~ 223 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHRD-----FWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI 223 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSC-----SSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccCCcccCC-----cCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 7888888885 4577999999998 653221 555554 46788889999999887 58899998888999
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++++++++.+++.|+++|- ++. .+.||+..+++++.+++||++.+.+.+.++++++++...+|.|++-
T Consensus 224 ~~a~~~~~~l~~~~i~~iE------eP~----~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 291 (410)
T 2qq6_A 224 PSSIRFARAMEPFGLLWLE------EPT----PPENLDALAEVRRSTSTPICAGENVYTRFDFRELFAKRAVDYVMPD 291 (410)
T ss_dssp HHHHHHHHHHGGGCCSEEE------CCS----CTTCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred HHHHHHHHHHhhcCCCeEE------CCC----ChhhHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999874 111 1357999999999999999999999999999999998789999873
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-07 Score=93.00 Aligned_cols=134 Identities=10% Similarity=0.149 Sum_probs=108.8
Q ss_pred CCEEEEecC--CCH---HHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEE
Q 013813 158 RPLFVQFCA--NDP---EILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS 229 (436)
Q Consensus 158 ~plivQL~g--~d~---e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVs 229 (436)
.|+...+++ .++ +.++++|+. ++.||+.|.|+.|+ .+++...++++++++.+ ++++.
T Consensus 124 vp~~~~~g~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~a~G~d~~l~ 188 (382)
T 2gdq_A 124 IPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITMI 188 (382)
T ss_dssp EEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEEE
T ss_pred eeEEEEecccCCCcccHHHHHHHHHHHHHcCCCEEEEcCCC---------------CCHHHHHHHHHHHHHhhCCCCEEE
Confidence 344444422 578 888888754 56799999999876 24677888899998877 58999
Q ss_pred EEeccCCChhhHHHHHHHHHHc-CccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 230 CKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 230 VKiRlg~~~~d~~~~ak~le~a-G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t 308 (436)
++..-+++.++++++++.+++. |+++|- +.. .+.||+..+++++.+++||++.+.+.+.++++++++..
T Consensus 189 vDan~~~~~~~a~~~~~~l~~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~ 258 (382)
T 2gdq_A 189 LDANQSYDAAAAFKWERYFSEWTNIGWLE-------EPL---PFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQR 258 (382)
T ss_dssp EECTTCCCHHHHHTTHHHHTTCSCEEEEE-------CCS---CSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHhhccCCeEEE-------CCC---CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC
Confidence 9988899999999999999999 988773 211 13579999999999999999999999999999999987
Q ss_pred Ccceeeee
Q 013813 309 GCEGVLSA 316 (436)
Q Consensus 309 GaDgVmIG 316 (436)
.+|.|++-
T Consensus 259 ~~d~v~ik 266 (382)
T 2gdq_A 259 CLDIIQPD 266 (382)
T ss_dssp CCSEECCC
T ss_pred CCCEEecC
Confidence 89999863
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-07 Score=92.19 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=105.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.++|+. ++.||+.|.|++|++ +++...++++++++.+ ++++.+...-+++.++++++
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~ 229 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGA---------------PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAY 229 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSS---------------CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC---------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 89999888854 567999999998862 3577788888888876 58899998889999999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc----Ccceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET----GCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t----GaDgVmIG 316 (436)
++.+++.|+++|- +... +.||+..+++++.+++||++.+.+.+.++++++++.. .+|.|++-
T Consensus 230 ~~~l~~~~i~~iE-------qP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 230 AKMLRDYPLFWYE-------EVGD---PLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp HHHHTTSCCSEEE-------CCSC---TTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred HHHHHHcCCCeec-------CCCC---hhhHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence 9999999999873 2111 3589999999999999999999999999999999986 69999874
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.5e-07 Score=92.77 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=107.6
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEec------CCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCCh
Q 013813 168 DPEILLNAARR-VEPYCDYVDINL------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL 238 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~------GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~ 238 (436)
+++++.++|+. ++.||+.|.|+. |+... ....|....++++...+++++|++.+ ++++.++..-+++.
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~---s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~ 228 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQ---QNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDT 228 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSC---SCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCcccc---CcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 89999988864 567999999996 55311 01112111245677889999999877 58899998888999
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++++++++.+++.|+++|- +. . .+.||+..+++++.+++||++.+.+.+.++++++++...+|.|++-
T Consensus 229 ~~a~~~~~~l~~~~i~~iE-------~P--~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 296 (407)
T 2o56_A 229 TSAIQFGRMIEELGIFYYE-------EP--V-MPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPD 296 (407)
T ss_dssp HHHHHHHHHHGGGCCSCEE-------CS--S-CSSSHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHHHHHHHhcCCCEEe-------CC--C-ChhhHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999873 11 1 1357999999999999999999999999999999998789998763
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-07 Score=88.84 Aligned_cols=133 Identities=18% Similarity=0.187 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C-CChhhHHHHHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKML 248 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g-~~~~d~~~~ak~l 248 (436)
..++...++.|+|.||+-+ ++|..+-.+.+.+.+-+++|++.++-+ .+|+=+ + .+.++....++.+
T Consensus 129 v~Ea~~Ai~~GAdEIDmVI----------Nig~lk~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia 197 (288)
T 3oa3_A 129 VSEAKRAMQNGASELDMVM----------NYPWLSEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLS 197 (288)
T ss_dssp HHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEe----------ehhhhcCCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHH
Confidence 3455567788999999543 156666678899999999998888655 366533 1 3456677788889
Q ss_pred HHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcc--eeeeehHHh
Q 013813 249 EDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLL 320 (436)
Q Consensus 249 e~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaD--gVmIGRgal 320 (436)
.++|+|+|--. |-.. ++.-..|..+++++.+. .+++|.+.|||+|.+|+.++++. ||+ |+..|+.++
T Consensus 198 ~eaGADfVKTSTGf~~----~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~a-GA~RiGtS~g~~I~ 269 (288)
T 3oa3_A 198 SLAGADYVKTSTGFNG----PGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRA-GAERLGASAGVKIV 269 (288)
T ss_dssp HHTTCSEEECCCSSSS----CCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHT-TCSEEEESCHHHHH
T ss_pred HHcCCCEEEcCCCCCC----CCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHc-CCceeehhhHHHHH
Confidence 99999999443 2211 11001244555555442 46999999999999999999996 999 666665554
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.9e-08 Score=90.99 Aligned_cols=89 Identities=27% Similarity=0.385 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+++.++++.++++|+++|+++...... .....+++.++++++.+++||+++|+|.++++++++++. |||+|++|+.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~---~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~-Gad~V~i~~~ 108 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAP---EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRA-GADKVSVNTA 108 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCT---TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHH-TCSEEEESHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccc---cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc-CCCEEEEChH
Confidence 467889999999999999998765432 111346788999999999999999999999999998885 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.+|+++.++..
T Consensus 109 ~~~~~~~~~~~~~ 121 (253)
T 1h5y_A 109 AVRNPQLVALLAR 121 (253)
T ss_dssp HHHCTHHHHHHHH
T ss_pred HhhCcHHHHHHHH
Confidence 9999998877643
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=98.58 E-value=6.5e-07 Score=91.92 Aligned_cols=145 Identities=11% Similarity=0.062 Sum_probs=117.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 156 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
...|+...+.+.+++++++.++ .++.||..|.| .|+|.... .....+++...+++++|++.+ ++++.|..
T Consensus 113 ~~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~------~~~~~~~~~d~e~v~avR~avG~d~~L~vDa 185 (405)
T 3rr1_A 113 DKMRTYSWVGGDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI------IDTSRAVDAAVARVAEIRSAFGNTVEFGLDF 185 (405)
T ss_dssp SCEEEEEECCCSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC------BCSHHHHHHHHHHHHHHHHTTGGGSEEEEEC
T ss_pred CceeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc------cccchhHHHHHHHHHHHHHHhCCCceEEEEC
Confidence 3467777888889999998886 45779999999 88874210 111234566778899999987 58999998
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.-+++.++++++++.+++.|+++|. +.. .+.|++..+++++.+++||++.+.+.+.++++++++...+|.
T Consensus 186 N~~~~~~~A~~~~~~L~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~ 255 (405)
T 3rr1_A 186 HGRVSAPMAKVLIKELEPYRPLFIE-------EPV---LAEQAETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSI 255 (405)
T ss_dssp CSCBCHHHHHHHHHHHGGGCCSCEE-------CSS---CCSSTHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEE-------CCC---CcccHHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCe
Confidence 8899999999999999999999883 111 134789999999999999999999999999999999888999
Q ss_pred eeeeh
Q 013813 313 VLSAE 317 (436)
Q Consensus 313 VmIGR 317 (436)
|++--
T Consensus 256 v~~d~ 260 (405)
T 3rr1_A 256 LQPDL 260 (405)
T ss_dssp ECCBT
T ss_pred EEECh
Confidence 98753
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=89.05 Aligned_cols=136 Identities=13% Similarity=0.192 Sum_probs=113.0
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
.|+...+...+++++.+.++ .++. |+..|.+.+|++ +++.-.+++++|++.+ ++++.|+..
T Consensus 138 v~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDan 202 (383)
T 3i4k_A 138 VDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAG---------------DPAEDTRRVAELAREVGDRVSLRIDIN 202 (383)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCSS---------------CHHHHHHHHHHHHHTTTTTSEEEEECT
T ss_pred EEEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 45556677788988887664 5676 999999998762 4566678899999987 489999999
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
.+++.+++.++++.+++.|+++|. ++ . .+.|++..+++++.+++||.+.+.+.+.++++++++...+|.|
T Consensus 203 ~~~~~~~A~~~~~~l~~~~i~~iE------qP---~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v 272 (383)
T 3i4k_A 203 ARWDRRTALHYLPILAEAGVELFE------QP---T-PADDLETLREITRRTNVSVMADESVWTPAEALAVVKAQAADVI 272 (383)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCEEE------SC---S-CTTCHHHHHHHHHHHCCEEEESTTCSSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE------CC---C-ChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEE
Confidence 999999999999999999999884 11 1 1357899999999999999999999999999999998789999
Q ss_pred eeehH
Q 013813 314 LSAES 318 (436)
Q Consensus 314 mIGRg 318 (436)
++--+
T Consensus 273 ~~k~~ 277 (383)
T 3i4k_A 273 ALKTT 277 (383)
T ss_dssp EECTT
T ss_pred EEccc
Confidence 87643
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.2e-07 Score=92.25 Aligned_cols=125 Identities=11% Similarity=0.100 Sum_probs=105.8
Q ss_pred HHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCC-hhhHHHH
Q 013813 169 PEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPN-LQDTIKY 244 (436)
Q Consensus 169 ~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~-~~d~~~~ 244 (436)
++++++.++ .++.||+.|.|++||+ | .+++...+++++|++.+ ++++.|....+++ .++++++
T Consensus 147 ~e~~~~~a~~~~~~Gf~~iKlk~g~~---------g----~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~ 213 (374)
T 3sjn_A 147 PEDNVAIVQGLKDQGFSSIKFGGGVM---------G----DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMM 213 (374)
T ss_dssp GGGGHHHHHHHHTTTCSEEEEECTTT---------T----SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCCC---------C----CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHH
Confidence 388887775 4567999999999985 2 24788888999999886 6899999988999 9999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+++.|+++|. +. . .+.|++..+++++.+++||++.+.+.+.++++++++...+|.|++-
T Consensus 214 ~~~l~~~~i~~iE-------qP--~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 275 (374)
T 3sjn_A 214 AKRLEEFNLNWIE-------EP--V-LADSLISYEKLSRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPD 275 (374)
T ss_dssp HHHSGGGCCSEEE-------CS--S-CTTCHHHHHHHHHHCSSEEEECTTCCHHHHHHHHHHHHCCSEECCB
T ss_pred HHHhhhcCceEEE-------CC--C-CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999883 21 1 1347899999999999999999999999999999998889999864
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-07 Score=86.91 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=94.2
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C-CChhhHHHHHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKML 248 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g-~~~~d~~~~ak~l 248 (436)
..++...++.|+|.||+.+ ++|..+..+.+.+.+-++++++.++- ..+|+=+ + .+.++....++.+
T Consensus 98 v~Ea~~Ai~~GAdEIDmVi----------Nig~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia 166 (239)
T 3ngj_A 98 AYETKVAVEQGAEEVDMVI----------NIGMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRC 166 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEe----------ehHHhccccHHHHHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHH
Confidence 3355567788999999874 25655667888888888888877741 2445312 2 3556777788888
Q ss_pred HHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcc--eeeeehHHhh
Q 013813 249 EDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLE 321 (436)
Q Consensus 249 e~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaD--gVmIGRgal~ 321 (436)
.++|+|+|-.. |-. .+.+..+.++.+++.+ +++|.++|||+|.+|+.++++. ||+ |+..|+.++.
T Consensus 167 ~~aGADfVKTSTGf~-------~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~a-GA~riGtS~~~~I~~ 236 (239)
T 3ngj_A 167 VAAGAEYVKTSTGFG-------THGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINN-GASRIGASAGIAILN 236 (239)
T ss_dssp HHHTCSEEECCCSSS-------SCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHT-TEEEEEESCHHHHHH
T ss_pred HHHCcCEEECCCCCC-------CCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHh-cccceecccHHHHHh
Confidence 99999999543 321 2346677777777765 6899999999999999999987 999 5555555543
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=7.9e-08 Score=91.04 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
+..++++.++++|+++|+++..+.... ..... +.++++++.+++||+++|||.++++++.+++. |||+|++|+++
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~---~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~-Gad~V~lg~~~ 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFG---RGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALAT-GCARVNVGTAA 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTT---SCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHT-TCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCccccc---CCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHc-CCCEEEECchH
Confidence 778899999999999999986554321 11344 88999999999999999999999999999985 99999999999
Q ss_pred hhCCccchhhhh
Q 013813 320 LENPALFAGFRT 331 (436)
Q Consensus 320 l~nP~lf~~i~~ 331 (436)
+.+|+++.++..
T Consensus 107 l~~p~~~~~~~~ 118 (244)
T 2y88_A 107 LENPQWCARVIG 118 (244)
T ss_dssp HHCHHHHHHHHH
T ss_pred hhChHHHHHHHH
Confidence 999998877653
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6e-07 Score=91.93 Aligned_cols=158 Identities=8% Similarity=0.079 Sum_probs=120.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhh-----c-Cccccccc--CChHHHHHHHHHHhccc--
Q 013813 156 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIAR-----R-GNYGAFLM--DNLPLVKSLVEKLALNL-- 224 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~-----~-~~~Gs~Ll--~~p~~v~eIv~av~~~~-- 224 (436)
+..|+...+.+.+++++++.++ .++.||..|-|.+|++..... + ..-|..+. +.++...+++++|++.+
T Consensus 121 ~~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~ 200 (401)
T 3sbf_A 121 DAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGN 200 (401)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCC
Confidence 3456666778889999998885 557799999999998531100 0 01122221 12466778889999887
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHH
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~ 304 (436)
++++.|+...+++.++++++++.+++.|+++|. +... +.|++..+++++.+++||++.+.+.+.++++++
T Consensus 201 d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iE-------qP~~---~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~ 270 (401)
T 3sbf_A 201 QFHILHDVHERLFPNQAIQFAKEVEQYKPYFIE-------DILP---PNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSL 270 (401)
T ss_dssp SSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEE-------CSSC---TTCGGGHHHHHTTCCCCEEECTTCCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CCCC---hhHHHHHHHHHhhCCCCEEeCCccCCHHHHHHH
Confidence 689999999899999999999999999998884 1111 347888899999999999999999999999999
Q ss_pred HHhcCcceeeeehHHhhCC
Q 013813 305 LEETGCEGVLSAESLLENP 323 (436)
Q Consensus 305 l~~tGaDgVmIGRgal~nP 323 (436)
++...+|.|++--+-.+..
T Consensus 271 i~~~~~d~v~~k~~~~GGi 289 (401)
T 3sbf_A 271 IANRRIDFIRCHVSQIGGI 289 (401)
T ss_dssp HHTTCCSEECCCGGGGTSH
T ss_pred HhcCCCCEEecCccccCCH
Confidence 9988899998765444433
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=94.13 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=116.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCc-----------------ccccccCChHHHHHHH
Q 013813 156 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGN-----------------YGAFLMDNLPLVKSLV 217 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~-----------------~Gs~Ll~~p~~v~eIv 217 (436)
+..|+...+.+.+++++++.++ .++.||..|-+.+|+|......+. .+-...++++...+++
T Consensus 131 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v 210 (418)
T 3r4e_A 131 DGIMVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLF 210 (418)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHH
T ss_pred CeeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 3456666677889999998885 457799999999999752111000 0001112356678889
Q ss_pred HHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCC
Q 013813 218 EKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 218 ~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI 295 (436)
++|++.+ ++++.|....+++.++++++++.+++.|+++|. +.. .+.|++..+++++.+++||++.+.+
T Consensus 211 ~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~ 280 (418)
T 3r4e_A 211 EELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLE-------DCT---PAENQEAFRLVRQHTVTPLAVGEIF 280 (418)
T ss_dssp HHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------SCS---CCSSGGGGHHHHHHCCSCEEECTTC
T ss_pred HHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE-------CCC---CccCHHHHHHHHhcCCCCEEEcCCc
Confidence 9999887 689999998899999999999999999999884 111 1347788899999999999999999
Q ss_pred CCHHHHHHHHHhcCcceeeeeh
Q 013813 296 RHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGR 317 (436)
.+.++++++++...+|.|++--
T Consensus 281 ~~~~~~~~~l~~~a~d~v~~k~ 302 (418)
T 3r4e_A 281 NTIWDAKDLIQNQLIDYIRATV 302 (418)
T ss_dssp CSGGGTHHHHHTTCCSEECCCT
T ss_pred CCHHHHHHHHHcCCCCeEecCc
Confidence 9999999999987899998753
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-06 Score=85.62 Aligned_cols=132 Identities=18% Similarity=0.150 Sum_probs=107.0
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
.|+-..+.+.+++++.+.|+ .++.||+.|.|+.|+ +++...+++++|++.- ++++.+...-+
T Consensus 129 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~avr~~g~~~~l~vDan~~ 192 (345)
T 2zad_A 129 IETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGE----------------NLKEDIEAVEEIAKVTRGAKYIVDANMG 192 (345)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHSTTCEEEEECTTC
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCcCEEEEeecC----------------CHHHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 34445566778999988885 457799999999875 3566677788888762 47788887778
Q ss_pred CChhhHHHHHHHHHHcCcc--EEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 236 PNLQDTIKYAKMLEDAGCS--LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d--~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
++.++++++++.+++.|++ +|- +. . .+.||+..+++++.+++||.+.+.+.+.++++++++...+|.|
T Consensus 193 ~~~~~a~~~~~~l~~~~i~~~~iE-------~P--~-~~~~~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v 262 (345)
T 2zad_A 193 YTQKEAVEFARAVYQKGIDIAVYE-------QP--V-RREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYV 262 (345)
T ss_dssp SCHHHHHHHHHHHHHTTCCCSEEE-------CC--S-CTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCHHHHHHHHHHHHhcCCCeeeee-------CC--C-CcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEE
Confidence 8999999999999999998 763 21 1 1357999999999999999999999999999999998789999
Q ss_pred ee
Q 013813 314 LS 315 (436)
Q Consensus 314 mI 315 (436)
++
T Consensus 263 ~i 264 (345)
T 2zad_A 263 NI 264 (345)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-07 Score=85.61 Aligned_cols=133 Identities=19% Similarity=0.209 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccC-CChhhHHHHHHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF-PNLQDTIKYAKMLE 249 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg-~~~~d~~~~ak~le 249 (436)
..++...++.|+|.||+-+ ++|+.+..+.+.+.+-+.++++.++ .|+-|=+-.+ .+.++....++.+.
T Consensus 114 v~Ea~~Ai~~GAdEIDmVi----------Nig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~ 183 (260)
T 3r12_A 114 AHEAIFAVESGADEIDMVI----------NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISK 183 (260)
T ss_dssp HHHHHHHHHHTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEe----------ehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3344466788999999864 3676667788999988888888774 4443333222 35567778888899
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcc--eeeeehHHhh
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLE 321 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaD--gVmIGRgal~ 321 (436)
++|+|+|--. .++ .++.+..+.++.+++.+ +++|-++|||+|.+|+.++++. ||+ |+..|+.++.
T Consensus 184 eaGADfVKTS----TGf--~~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~a-GA~RiGtS~g~~I~~ 252 (260)
T 3r12_A 184 LAGAHFVKTS----TGF--GTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMY-GADRIGTSSGVKIVQ 252 (260)
T ss_dssp HTTCSEEECC----CSS--SSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEESCHHHHHH
T ss_pred HhCcCEEEcC----CCC--CCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHc-CCceeecchHHHHHH
Confidence 9999999443 111 12246677777777765 6999999999999999999997 999 6666666554
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.53 E-value=9.2e-08 Score=90.80 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
+..++++.++++|+++|+|+..+.... + ...+ +.++++++.+++||+++|||.++++++.+++. |||+|.+|+.+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~-~--~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~-Gad~V~lg~~~ 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFG-T--GDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALAT-GCTRVNLGTAA 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHT-S--CCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHT-TCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhc-C--CChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHc-CCCEEEECchH
Confidence 778899999999999999987554321 1 1345 88999999999999999999999999999986 99999999999
Q ss_pred hhCCccchhhhh
Q 013813 320 LENPALFAGFRT 331 (436)
Q Consensus 320 l~nP~lf~~i~~ 331 (436)
+.||+++.++..
T Consensus 108 l~~p~~~~~~~~ 119 (244)
T 1vzw_A 108 LETPEWVAKVIA 119 (244)
T ss_dssp HHCHHHHHHHHH
T ss_pred hhCHHHHHHHHH
Confidence 999998877643
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.5e-07 Score=107.71 Aligned_cols=204 Identities=13% Similarity=0.124 Sum_probs=133.1
Q ss_pred HHHHhCCCcEEEccCC-CCCcHHHHHHHHHhCCCeEEeC--cccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHH
Q 013813 96 HWTKLGRPKLIVAPMV-DNSELPFRMLCRRYGAEAAYTP--MLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEIL 172 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~-gvtd~~fR~l~~~~Ga~l~~Te--misa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~ 172 (436)
+-+.+|..||++|||. ..++..|-..+.+.|.-...+- ..+...+.......+. + .+.++|+.|+++-.++..+
T Consensus 583 ~t~llg~~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~-~--t~~~~~~gvN~~~~~~~~~ 659 (2051)
T 2uv8_G 583 FSKLIGRPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVS-Q--IEKGSTFGINLIYVNPFML 659 (2051)
T ss_dssp HHHHHSSCSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHH-H--SCTTCCEEEEEETTCTTHH
T ss_pred HHHhhCccceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHH-h--cCCCCceEEEEeecChhhh
Confidence 5566888999999999 5559988777878876444322 2333333222111111 1 2457899999887766422
Q ss_pred ---HHHHH-HHcCCC--cEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 173 ---LNAAR-RVEPYC--DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 173 ---~~AA~-~v~~g~--D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
.+.++ ++++|+ |+|.+..|-|. ++.+.++++.+ ++++.... . .....+..+.
T Consensus 660 ~~~~~~~~~~~~~gv~i~~v~~~ag~p~---------------~~~~~~~i~~l----G~~vi~~~-~--~~~~a~~~~~ 717 (2051)
T 2uv8_G 660 QWGIPLIKELRSKGYPIQFLTIGAGVPS---------------LEVASEYIETL----GLKYLGLK-P--GSIDAISQVI 717 (2051)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCCC---------------HHHHHHHHHHS----CCSCEEEC-C--CSHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCcceEEecCCCCc---------------hhhHHHHHHHc----CCEEEEec-C--chHHHHHHHH
Confidence 13333 346775 55888877765 23344455554 77766531 1 2356666778
Q ss_pred HHHHcCccEE---EeccCcccccCCCC--CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH----------hcCcc
Q 013813 247 MLEDAGCSLL---AVHGRTRDEKDGKK--FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE----------ETGCE 311 (436)
Q Consensus 247 ~le~aG~d~I---~VHgRt~~~~~~~~--g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~----------~tGaD 311 (436)
..+++|+|++ .+.|..+.+-.+.. ...-+.++.+|++.++||||+.|||.+.+++..+|. .-|||
T Consensus 718 ~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgad 797 (2051)
T 2uv8_G 718 NIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFD 797 (2051)
T ss_dssp HHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCS
T ss_pred HHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHccccccccCccCCCCc
Confidence 8899999994 44555544321110 011234578899999999999999999999999993 24999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
||++|+.++.-.+
T Consensus 798 Gv~~GTrf~~t~E 810 (2051)
T 2uv8_G 798 GFLFGSRVMIAKE 810 (2051)
T ss_dssp CEECSGGGTTSTT
T ss_pred eeeechHHHhCcc
Confidence 9999999987666
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.4e-07 Score=91.44 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=112.7
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+..++...+++.+.+.++ .++.|+..|.+++|| +++.-.+.++++++.+ ++++.|+.+.
T Consensus 130 v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~----------------~~~~d~~~v~avR~~~g~~~~l~vDan~ 193 (356)
T 3ro6_B 130 LPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG----------------DEEQDFERLRRLHETLAGRAVVRVDPNQ 193 (356)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHTTSSEEEEECTT
T ss_pred eeeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45567788889999988775 567799999999886 3556677788888876 6899999999
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc-Cccee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET-GCEGV 313 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t-GaDgV 313 (436)
+|+.+++.++++.+++.|+.+|- +. . .+.||+..+++++.+++||.+.+.+.+.+++.++++.. .+|.|
T Consensus 194 ~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v 263 (356)
T 3ro6_B 194 SYDRDGLLRLDRLVQELGIEFIE-------QP--F-PAGRTDWLRALPKAIRRRIAADESLLGPADAFALAAPPAACGIF 263 (356)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCEE-------CC--S-CTTCHHHHHTSCHHHHHTEEESTTCCSHHHHHHHHSSSCSCSEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEE-------CC--C-CCCcHHHHHHHHhcCCCCEEeCCcCCCHHHHHHHHhcCCcCCEE
Confidence 99999999999999999999883 21 1 13478989999888899999999999999999999987 79999
Q ss_pred eeehHH
Q 013813 314 LSAESL 319 (436)
Q Consensus 314 mIGRga 319 (436)
++--+-
T Consensus 264 ~~k~~~ 269 (356)
T 3ro6_B 264 NIKLMK 269 (356)
T ss_dssp EECHHH
T ss_pred EEcccc
Confidence 986543
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.6e-07 Score=82.70 Aligned_cols=149 Identities=24% Similarity=0.256 Sum_probs=95.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchh--hh--cCccccccc------CChHHHHHHHHHH----
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRI--AR--RGNYGAFLM------DNLPLVKSLVEKL---- 220 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~--~~--~~~~Gs~Ll------~~p~~v~eIv~av---- 220 (436)
.+.|++..|.+.+++++.+.++.+. .|++.|++...+|... .+ +..++..++ .+++.+...++.=
T Consensus 5 ~~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V 84 (212)
T 2v82_A 5 TKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLI 84 (212)
T ss_dssp SSSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEE
Confidence 4689999999999999999997664 5899999998776521 11 111222111 2334333222210
Q ss_pred ------------hcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--
Q 013813 221 ------------ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 286 (436)
Q Consensus 221 ------------~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-- 286 (436)
++..+.++.+.+ .+..+ +..+.+.|+|+|.++.. ....++.++++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~g~------~t~~e-~~~a~~~G~d~v~v~~t---------~~~g~~~~~~l~~~~~~~ 148 (212)
T 2v82_A 85 VTPNIHSEVIRRAVGYGMTVCPGC------ATATE-AFTALEAGAQALKIFPS---------SAFGPQYIKALKAVLPSD 148 (212)
T ss_dssp ECSSCCHHHHHHHHHTTCEEECEE------CSHHH-HHHHHHTTCSEEEETTH---------HHHCHHHHHHHHTTSCTT
T ss_pred EeCCCCHHHHHHHHHcCCCEEeec------CCHHH-HHHHHHCCCCEEEEecC---------CCCCHHHHHHHHHhccCC
Confidence 001122222111 11122 23445678888876431 0235788999988875
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+||++.|||+ .+++.++++. |+|+|.+|++++..
T Consensus 149 ipvia~GGI~-~~~i~~~~~~-Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 149 IAVFAVGGVT-PENLAQWIDA-GCAGAGLGSDLYRA 182 (212)
T ss_dssp CEEEEESSCC-TTTHHHHHHH-TCSEEEECTTTCCT
T ss_pred CeEEEeCCCC-HHHHHHHHHc-CCCEEEEChHHhCC
Confidence 9999999997 8999999985 99999999998765
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-06 Score=98.60 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC------CCCCccCHHHHHH
Q 013813 208 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKA 280 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~------~~~g~ad~~~i~~ 280 (436)
.+++.+.++++.+++.. ++||.||+=... .....|+.+.++|+|+|+|.|....... ...|.+-...+.+
T Consensus 1010 ~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~---gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~e 1086 (1520)
T 1ofd_A 1010 YSIEDLAQLIYDLHQINPEAQVSVKLVAEI---GIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTE 1086 (1520)
T ss_dssp SSHHHHHHHHHHHHHHCTTSEEEEEEECST---THHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEecCCC---ChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHH
Confidence 34567889999999888 899999965432 3334678899999999999665422100 0011222345566
Q ss_pred HHhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 281 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 281 ik~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+.+.+ ++|||+.|||.+..|+.+++.. |||+|++||++|....
T Consensus 1087 v~~al~~~glr~~IpVIAdGGIrtG~DVakALaL-GAdaV~iGTafL~alg 1136 (1520)
T 1ofd_A 1087 VHRVLMENQLRDRVLLRADGGLKTGWDVVMAALM-GAEEYGFGSIAMIAEG 1136 (1520)
T ss_dssp HHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHT-TCSEEECSHHHHHHTT
T ss_pred HHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHc-CCCeeEEcHHHHHHHH
Confidence 65543 6999999999999999999997 9999999999987543
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-06 Score=86.89 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=111.2
Q ss_pred CEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC
Q 013813 159 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 235 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg 235 (436)
|+...+...+++++++.++ .++.|+..|.+++|++ ++.-.+++++|++.+ ++++.|+..-+
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g~~----------------~~~d~~~v~avR~a~g~~~~l~vDan~~ 193 (354)
T 3jva_A 130 ITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTG----------------IEADIARVKAIREAVGFDIKLRLDANQA 193 (354)
T ss_dssp ECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred eeeEEeCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC----------------HHHHHHHHHHHHHHcCCCCeEEEECCCC
Confidence 3345667789999887775 5677999999998864 244567788888876 58899998889
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++.++++.+++.|+++|. ++ . .+.||+..+++++.+++||.+.+.+.+.+++.++++...+|.|++
T Consensus 194 ~~~~~a~~~~~~L~~~~i~~iE------qP---~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~ 263 (354)
T 3jva_A 194 WTPKDAVKAIQALADYQIELVE------QP---V-KRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINI 263 (354)
T ss_dssp SCHHHHHHHHHHTTTSCEEEEE------CC---S-CTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEE------CC---C-ChhhHHHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999998884 11 1 134789999999999999999999999999999999888999998
Q ss_pred ehHHhh
Q 013813 316 AESLLE 321 (436)
Q Consensus 316 GRgal~ 321 (436)
--+-.+
T Consensus 264 k~~~~G 269 (354)
T 3jva_A 264 KLMKCG 269 (354)
T ss_dssp CHHHHT
T ss_pred CchhcC
Confidence 754443
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=83.19 Aligned_cols=133 Identities=19% Similarity=0.255 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C-C----ChhhHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-P----NLQDTIKY 244 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g-~----~~~d~~~~ 244 (436)
..++...++.|+|.||+.+ ++|..+-.+.+.+.+-+.++++.++ ...+|+=+ + . +.++....
T Consensus 83 ~~E~~~Ai~~GAdEIDmVi----------nig~lk~g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a 151 (231)
T 3ndo_A 83 ATEAELAVAAGATEIDMVI----------DVGAALAGDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLADV 151 (231)
T ss_dssp HHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEe----------ehHhhhcccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHHH
Confidence 3355567788999999875 3677777789999999999988884 22345423 1 2 45667778
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcc--eeeeehHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLL 320 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaD--gVmIGRgal 320 (436)
++.+.++|+|+|--. .++. ..+.+..+.++.+++.+ +++|-++|||+|.+|+.++++. ||+ |+..|+.++
T Consensus 152 ~~ia~~aGADfVKTS----TGf~-~~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~a-Ga~RiGtS~g~~I~ 225 (231)
T 3ndo_A 152 CRVARDAGADFVKTS----TGFH-PSGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDA-GATRLGLSGSRAVL 225 (231)
T ss_dssp HHHHHHTTCSEEECC----CSCC-TTCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHT-TCSEEEESSHHHHH
T ss_pred HHHHHHHCcCEEEcC----CCCC-CCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHh-cchhcccchHHHHH
Confidence 888999999999432 1110 02346677777777765 6999999999999999999987 999 776666655
Q ss_pred h
Q 013813 321 E 321 (436)
Q Consensus 321 ~ 321 (436)
.
T Consensus 226 ~ 226 (231)
T 3ndo_A 226 D 226 (231)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.2e-07 Score=90.69 Aligned_cols=137 Identities=13% Similarity=0.080 Sum_probs=110.0
Q ss_pred CCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCccccc-ccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 167 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAF-LMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 167 ~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~-Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
.+++++++.|+ .++.||..|.++.|+|.. +..|.. ...+++...+++++|++.+ ++++.|+..-+++.++++
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~----~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~ 225 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYT----IYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAK 225 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCB----TTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCc----ccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHH
Confidence 57899988775 456799999999998753 111221 1223667778899999887 589999988899999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
++++.+++.|+++|. +... +.|++..+++++.+++||++.+.+.+.++++++++...+|.|++--
T Consensus 226 ~~~~~l~~~~i~~iE-------eP~~---~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~ 290 (404)
T 4e5t_A 226 RLARRLEAYDPLWFE-------EPIP---PEKPEDMAEVARYTSIPVATGERLCTKYEFSRVLETGAASILQMNL 290 (404)
T ss_dssp HHHHHHGGGCCSEEE-------CCSC---TTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred HHHHHHhhcCCcEEE-------CCCC---cccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCc
Confidence 999999999999884 1111 3478999999999999999999999999999999987899998653
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-06 Score=81.73 Aligned_cols=142 Identities=17% Similarity=0.224 Sum_probs=102.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
-+.|++..=+.-++.++.+|. +.|+|+|=|... .+ +++.+.++++..++ .++.+.+-+.
T Consensus 112 v~lPvl~kdfiid~~qv~~A~---~~GAD~VlLi~a--------------~l-~~~~l~~l~~~a~~-lGl~~lvev~-- 170 (272)
T 3qja_A 112 VSIPVLRKDFVVQPYQIHEAR---AHGADMLLLIVA--------------AL-EQSVLVSMLDRTES-LGMTALVEVH-- 170 (272)
T ss_dssp CSSCEEEESCCCSHHHHHHHH---HTTCSEEEEEGG--------------GS-CHHHHHHHHHHHHH-TTCEEEEEES--
T ss_pred CCCCEEECccccCHHHHHHHH---HcCCCEEEEecc--------------cC-CHHHHHHHHHHHHH-CCCcEEEEcC--
Confidence 357888776777776655543 479999988632 11 24567777777654 5777766542
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.++ ++.+.+.|++.|-+.+|.... . ..+++.+.++++.+ ++||++.|||.|++|+.++++. |+|||
T Consensus 171 -t~ee----~~~A~~~Gad~IGv~~r~l~~---~--~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~-Gadgv 239 (272)
T 3qja_A 171 -TEQE----ADRALKAGAKVIGVNARDLMT---L--DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGA-GADAV 239 (272)
T ss_dssp -SHHH----HHHHHHHTCSEEEEESBCTTT---C--CBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHT-TCSEE
T ss_pred -CHHH----HHHHHHCCCCEEEECCCcccc---c--ccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHc-CCCEE
Confidence 2222 344457899999999875432 1 45778888988877 7999999999999999999986 99999
Q ss_pred eeehHHhhCCccchhh
Q 013813 314 LSAESLLENPALFAGF 329 (436)
Q Consensus 314 mIGRgal~nP~lf~~i 329 (436)
.||++++..++.-..+
T Consensus 240 lVGsal~~a~dp~~~~ 255 (272)
T 3qja_A 240 LVGEGLVTSGDPRAAV 255 (272)
T ss_dssp EECHHHHTCSCHHHHH
T ss_pred EEcHHHhCCCCHHHHH
Confidence 9999999877754433
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.1e-07 Score=91.74 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=104.2
Q ss_pred CCH-HHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 167 NDP-EILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 167 ~d~-e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
.++ +.+.++|+. ++.||+.|.|+.|+ +++...+++++|++.+ ++++.++..-+++.++++
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai 246 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD----------------AARVDIERVRHVRKVLGDEVDILTDANTAYTMADAR 246 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 577 888887754 56699999999875 4677788899998876 588999988889999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++++.+++.|+++|- +.. .+.||+..+++++.++ +||++.+.+.+.++++++++...+|.|++-
T Consensus 247 ~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 311 (428)
T 3bjs_A 247 RVLPVLAEIQAGWLE-------EPF---ACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPD 311 (428)
T ss_dssp HHHHHHHHTTCSCEE-------CCS---CTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCB
T ss_pred HHHHHHHhcCCCEEE-------CCC---CccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 999999999999873 211 1357999999999998 999999999999999999998789988763
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-07 Score=89.24 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++++.++++|++.|.++......... ..+++.++++++.+++||+++|||.+.+++.++++. |||+|++|+.
T Consensus 30 ~~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~---g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~-Gad~v~lg~~ 105 (266)
T 2w6r_A 30 ILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLA-GADKALAASV 105 (266)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTSSCSS---CCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHH-TCSEEECCCC
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccCCC---cccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc-CCcHhhhhHH
Confidence 468899999999999999998766543221 357899999999999999999999999999999985 9999999999
Q ss_pred Hh-h--CCccchhhh
Q 013813 319 LL-E--NPALFAGFR 330 (436)
Q Consensus 319 al-~--nP~lf~~i~ 330 (436)
++ . +|+.+.++.
T Consensus 106 ~~~~~~~~~~~~~~~ 120 (266)
T 2w6r_A 106 FHFREIDMRELKEYL 120 (266)
T ss_dssp C------CHHHHHHC
T ss_pred HHhCCCCHHHHHHHH
Confidence 99 5 899888764
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.1e-07 Score=86.95 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=98.4
Q ss_pred CCEEEEecCCC--HHHHHHHHHHHcCCCcEEEEec--CCCch---hhh-----cCcccccccCChHHHHHHHHHHhcccC
Q 013813 158 RPLFVQFCAND--PEILLNAARRVEPYCDYVDINL--GCPQR---IAR-----RGNYGAFLMDNLPLVKSLVEKLALNLN 225 (436)
Q Consensus 158 ~plivQL~g~d--~e~~~~AA~~v~~g~D~IdLN~--GCP~~---~~~-----~~~~Gs~Ll~~p~~v~eIv~av~~~~~ 225 (436)
..++.=|...+ .+...+.++.+++++|.|||.. .-|.- ... .-..| -+.+.+.++++++++.++
T Consensus 16 ~~li~~i~~GdP~~~~~~~~~~~l~~~aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G----~~~~~~~~~v~~ir~~~~ 91 (271)
T 1ujp_A 16 AALIPYLTAGFPSREGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKG----MSVQGALELVREVRALTE 91 (271)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCC
T ss_pred ceEEEEecCCCCChHHHHHHHHHHHhcCCEEEECCCCCCcccccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCC
Confidence 34555555554 4566667765544499999974 33420 000 00011 255677889999998888
Q ss_pred ccEEEEeccCCC-h--hhHHHHHHHHHHcCccEEEe-----------------ccC---------ccc------------
Q 013813 226 VPVSCKIRVFPN-L--QDTIKYAKMLEDAGCSLLAV-----------------HGR---------TRD------------ 264 (436)
Q Consensus 226 iPVsVKiRlg~~-~--~d~~~~ak~le~aG~d~I~V-----------------HgR---------t~~------------ 264 (436)
+||.+ + ..++ . -....|++.+.++|+|++++ ||- +..
T Consensus 92 ~Pii~-m-~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~g 169 (271)
T 1ujp_A 92 KPLFL-M-TYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATG 169 (271)
T ss_dssp SCEEE-E-CCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCS
T ss_pred CCEEE-E-ecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCC
Confidence 99888 2 1111 1 13356778888888887766 111 000
Q ss_pred -----ccCCCCC------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 265 -----EKDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 265 -----~~~~~~g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
...+.+| ....++++++++.+++||++.|||+|++++.++ . |||+|++|+++...
T Consensus 170 fiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~-~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 170 FVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--A-VADGVVVGSALVRA 235 (271)
T ss_dssp CEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--T-TSSEEEECHHHHHH
T ss_pred CEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--c-CCCEEEEChHHhcc
Confidence 0001111 123578999999999999999999999999996 4 89999999998754
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-06 Score=79.55 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=99.1
Q ss_pred CCCCEEEEecCCCHHH-HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 156 EDRPLFVQFCANDPEI-LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 156 ~e~plivQL~g~d~e~-~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
.+.|+.+.+.-.++.. +.+ ..++.|+|+|-++...+ .+.+.++++.+++. ++++.+-+-.
T Consensus 52 ~~~~i~~~~~~~~~~~~~~~--~~~~~Gad~v~v~~~~~----------------~~~~~~~~~~~~~~-g~~~~v~~~~ 112 (211)
T 3f4w_A 52 PHKEVLADAKIMDGGHFESQ--LLFDAGADYVTVLGVTD----------------VLTIQSCIRAAKEA-GKQVVVDMIC 112 (211)
T ss_dssp TTSEEEEEEEECSCHHHHHH--HHHHTTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEECTT
T ss_pred CCCEEEEEEEeccchHHHHH--HHHhcCCCEEEEeCCCC----------------hhHHHHHHHHHHHc-CCeEEEEecC
Confidence 4678888777665443 232 33567999999974311 24456666666543 5666553211
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
..+..+.++.+.+.|+|+|.++.....+... ...++.++++++.. ++||++.|||+ .+++.++++. |||+|
T Consensus 113 ---~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~---~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~~~-Gad~v 184 (211)
T 3f4w_A 113 ---VDDLPARVRLLEEAGADMLAVHTGTDQQAAG---RKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYALL-GPDVV 184 (211)
T ss_dssp ---CSSHHHHHHHHHHHTCCEEEEECCHHHHHTT---CCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHHTT-CCSEE
T ss_pred ---CCCHHHHHHHHHHcCCCEEEEcCCCcccccC---CCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHc-CCCEE
Confidence 1344567788889999999887443222211 23678899999886 89999999996 9999999875 99999
Q ss_pred eeehHHhhCCcc
Q 013813 314 LSAESLLENPAL 325 (436)
Q Consensus 314 mIGRgal~nP~l 325 (436)
.+|++++..++.
T Consensus 185 vvGsai~~~~d~ 196 (211)
T 3f4w_A 185 IVGSAITHAADP 196 (211)
T ss_dssp EECHHHHTCSSH
T ss_pred EECHHHcCCCCH
Confidence 999999886654
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=6.4e-06 Score=86.58 Aligned_cols=130 Identities=22% Similarity=0.209 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
|-.++.+.++..++++|+|.|-|... + | .-+.+.+.++.+++.. +++|.+. +. -+.+-
T Consensus 277 gv~~d~~eR~~aLv~AGvD~iviD~a--h-----G--------hs~~v~~~i~~ik~~~p~~~viaG-----NV-aT~e~ 335 (556)
T 4af0_A 277 GTRPGDKDRLKLLAEAGLDVVVLDSS--Q-----G--------NSVYQIEFIKWIKQTYPKIDVIAG-----NV-VTREQ 335 (556)
T ss_dssp CSSHHHHHHHHHHHHTTCCEEEECCS--C-----C--------CSHHHHHHHHHHHHHCTTSEEEEE-----EE-CSHHH
T ss_pred ccCccHHHHHHHHHhcCCcEEEEecc--c-----c--------ccHHHHHHHHHHHhhCCcceEEec-----cc-cCHHH
Confidence 45678888888899999999888632 1 1 2356788888888776 6788776 21 12345
Q ss_pred HHHHHHcCccEEEecc------CcccccCCCCCccCHHHHHHHH---hhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVK---NALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHg------Rt~~~~~~~~g~ad~~~i~~ik---~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.|.++|+|.|-|-- -|+.. .+-|.+.+..|.+++ +..++|||+-|||.+.-|+.++|.. |||.||+
T Consensus 336 a~~Li~aGAD~vkVGiGpGSiCtTr~v--~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaa-GAd~VMl 412 (556)
T 4af0_A 336 AAQLIAAGADGLRIGMGSGSICITQEV--MAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALAL-GASAVMM 412 (556)
T ss_dssp HHHHHHHTCSEEEECSSCSTTBCCTTT--CCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT-TCSEEEE
T ss_pred HHHHHHcCCCEEeecCCCCcccccccc--cCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhc-CCCEEEE
Confidence 6778889999998731 12221 122344555555554 4468999999999999999999996 9999999
Q ss_pred ehHH
Q 013813 316 AESL 319 (436)
Q Consensus 316 GRga 319 (436)
|.-+
T Consensus 413 Gsll 416 (556)
T 4af0_A 413 GGLL 416 (556)
T ss_dssp STTT
T ss_pred chhh
Confidence 9754
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.5e-06 Score=86.10 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=115.8
Q ss_pred CCCCEEEEec---CCCHHHHHHHH-HH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccE
Q 013813 156 EDRPLFVQFC---ANDPEILLNAA-RR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPV 228 (436)
Q Consensus 156 ~e~plivQL~---g~d~e~~~~AA-~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPV 228 (436)
...|+...+. ..+++++++.+ +. ++.|+..|.|..|++... ...+++.-.+++++|++.+ ++++
T Consensus 124 ~~v~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~---------~~~~~~~d~~~v~avR~a~g~~~~l 194 (393)
T 4dwd_A 124 TRLPCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTR---------CDVDIPGDIAKARAVRELLGPDAVI 194 (393)
T ss_dssp SEEEEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC---------CSCCHHHHHHHHHHHHHHHCTTCCE
T ss_pred CceeeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc---------cccCHHHHHHHHHHHHHHhCCCCeE
Confidence 3456666653 36789888777 54 566999999999987531 3457888888999999886 6899
Q ss_pred EEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 229 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 229 sVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t 308 (436)
.|+..-+++.++++++++.+++.|+++|- +... +.|++..+++++.+++||.+.+.+.+.++++++++..
T Consensus 195 ~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~ 264 (393)
T 4dwd_A 195 GFDANNGYSVGGAIRVGRALEDLGYSWFE-------EPVQ---HYHVGAMGEVAQRLDITVSAGEQTYTLQALKDLILSG 264 (393)
T ss_dssp EEECTTCCCHHHHHHHHHHHHHTTCSEEE-------CCSC---TTCHHHHHHHHHHCSSEEEBCTTCCSHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCEEE-------CCCC---cccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC
Confidence 99999899999999999999999999884 2111 3478999999999999999999999999999999986
Q ss_pred Ccceeeeeh
Q 013813 309 GCEGVLSAE 317 (436)
Q Consensus 309 GaDgVmIGR 317 (436)
+|.|++--
T Consensus 265 -~d~v~~k~ 272 (393)
T 4dwd_A 265 -VRMVQPDI 272 (393)
T ss_dssp -CCEECCCT
T ss_pred -CCEEEeCc
Confidence 99998753
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=88.81 Aligned_cols=125 Identities=11% Similarity=0.142 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
+.+++++.++|+ .++.||+.|.|+.|+ +++...+++++|++.+ ++++.+...-+++.++++
T Consensus 196 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~ 259 (441)
T 2hxt_A 196 GYSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAI 259 (441)
T ss_dssp TSCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCC----------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 358999988885 456799999999763 3567778889998877 588999988889999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++++.+++.|+++|- +. . .+.||+..+++++.+ ++||++.+.+.+.++++++++...+|.|++-
T Consensus 260 ~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 324 (441)
T 2hxt_A 260 DWMRQLAEFDIAWIE-------EP--T-SPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQID 324 (441)
T ss_dssp HHHHTTGGGCCSCEE-------CC--S-CTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred HHHHHHHhcCCCeee-------CC--C-CHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999873 11 1 135789999999987 6999999999999999999998889999874
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=98.42 E-value=8.7e-07 Score=81.75 Aligned_cols=187 Identities=12% Similarity=0.137 Sum_probs=115.3
Q ss_pred HHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcC
Q 013813 121 LCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRG 200 (436)
Q Consensus 121 l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~ 200 (436)
+.+..+.+++++.+-.... +.......++......++.+.+.+.+.+.. .+.++.|++.+=+. |.
T Consensus 20 ~~~~~~~dlvl~D~~~p~~---~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~---~~~~~~Ga~~~l~k---p~------ 84 (237)
T 3cwo_X 20 KYKELKPDIVTMDITMPEM---NGIDAIKEIMKIDPNAKIIVCSAMGQQAMV---IEAIKAGAKDFIVN---TA------ 84 (237)
T ss_dssp HHHHHCCSCEEEECCSTTS---SHHHHHHHHHHHSSSCCEEEECCSSTHHHH---HHHHHTTCCEEEES---HH------
T ss_pred HHHhcCCCEEEEeCCCCCC---CHHHHHHHHHHhCCCCCEEEEECCCCHHHH---HHHHHCCHHheEeC---Cc------
Confidence 3445677877766532210 111111112212334567777777663333 33455677654221 10
Q ss_pred cccccccCChHHHHHHHHHHhcc-cCc---------cEEEEeccCCC--hhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 201 NYGAFLMDNLPLVKSLVEKLALN-LNV---------PVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 201 ~~Gs~Ll~~p~~v~eIv~av~~~-~~i---------PVsVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
..+.++++..+.+.+... .-. .+.+....+.. .....++++.+...|+..+.+++....+.
T Consensus 85 -----~~~~~~l~~~i~~~~~~~~~~~~~d~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~~~~~~~~vli~~~~~~g~-- 157 (237)
T 3cwo_X 85 -----AVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT-- 157 (237)
T ss_dssp -----HHHCTHHHHHHHHHHTGGGEEEEEEEEESSSCEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTC--
T ss_pred -----ccChHHHHHHHHHHhCCCceEEEeeecccCCcEEEEEeCCccccccCHHHHHHHHhhcCCCeEEEEecCCCCc--
Confidence 012345555555554322 111 12333333321 13567888899999999898888644332
Q ss_pred CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 269 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 269 ~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
++ ..+++.++++++..++|||+.||+.+++++.++++ .|+|+|++|++++.+|+.+.++..
T Consensus 158 ~~-g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~-~G~~~~~vg~a~~~~~~~~~~~~~ 218 (237)
T 3cwo_X 158 KS-GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASVFHFREIDVRELKE 218 (237)
T ss_dssp CS-CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-HTCSEEEESHHHHTTSSCHHHHHH
T ss_pred cc-cccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHH-cCcHHHhhhHHHHcCCCCHHHHHH
Confidence 22 23489999999999999999999999999999998 599999999999999999987764
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=4.4e-07 Score=112.02 Aligned_cols=199 Identities=13% Similarity=0.156 Sum_probs=127.8
Q ss_pred HHHHhCCCcEEEccCCC-CCcHHHHHHHHHhCCCeEE--eCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHH
Q 013813 96 HWTKLGRPKLIVAPMVD-NSELPFRMLCRRYGAEAAY--TPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEIL 172 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~g-vtd~~fR~l~~~~Ga~l~~--Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~ 172 (436)
|.+.+|+.||++|||++ .++..+-..+.+.|.-..+ ..|.+.+.+.......+. ..+.++|+.|+++-.++..+
T Consensus 421 ~~~~lg~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~~r~---~~~~~~p~~vNl~~~~p~~~ 497 (3089)
T 3zen_D 421 FTRLTGRSPILLAGMTPTTVDAKIVAAAANAGHWAELAGGGQVTEQIFNDRIAELET---LLEPGRAIQFNTLFLDPYLW 497 (3089)
T ss_dssp HHHHHSSCSEEECCCHHHHTSHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHHHHH---HSCTTCCCEEEEECSCHHHH
T ss_pred hhhhcCCCCEEeCCCcCCcCCHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHH---hcCCCCceeechhhcChhhh
Confidence 56678889999999995 5588887777777763333 223333333222111111 12347899999998887542
Q ss_pred H------HHHH-HHcCC--CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE-EeccCCChhhHH
Q 013813 173 L------NAAR-RVEPY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-KIRVFPNLQDTI 242 (436)
Q Consensus 173 ~------~AA~-~v~~g--~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV-KiRlg~~~~d~~ 242 (436)
. +.++ .++.| +|+|-+.+|.|. ++...++++.+++. ++.+.. +. .+.+
T Consensus 498 ~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~---------------~ee~~~~i~~l~~~-Gi~~i~~~~---~t~~--- 555 (3089)
T 3zen_D 498 KLQVGGKRLVQRARQSGAPIDGLVVSAGIPD---------------LEEAVDIIDELNEV-GISHVVFKP---GTVE--- 555 (3089)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCEEEEESSCCC---------------HHHHHHHHTSTTHH-HHCSEEECC---CSHH---
T ss_pred hhccCHHHHHHHHHHcCCCceEEEEeCCCCc---------------hhHhHHHHHHHHHc-CCEEEEEeC---CCHH---
Confidence 1 2233 34667 799999988883 23444555555433 443333 52 1223
Q ss_pred HHHHHHHHcCcc------EEEeccCcccccCCCCCccC-HHHH----HHHHhhCCCcEEEccCCCCHHHHHHHH------
Q 013813 243 KYAKMLEDAGCS------LLAVHGRTRDEKDGKKFRAD-WNAI----KAVKNALRIPVLANGNVRHMEDVQKCL------ 305 (436)
Q Consensus 243 ~~ak~le~aG~d------~I~VHgRt~~~~~~~~g~ad-~~~i----~~ik~~~~iPVianGGI~s~eda~~~l------ 305 (436)
.++.+++.|++ .|++.|.+..+-.+. .+ ..++ .++++.+++||++.|||.+.+++..++
T Consensus 556 -~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~---~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~ 631 (3089)
T 3zen_D 556 -QIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSW---EDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAE 631 (3089)
T ss_dssp -HHHHHHHHHTTSTTSCEEEEECCSSSSEECCS---CCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGG
T ss_pred -HHHHHHHhhhhcCCCcEEEEEeCCCcCCCCCc---ccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhcccccc
Confidence 34445566666 788888776543222 12 2344 677777899999999999999999999
Q ss_pred -----HhcCcceeeeehHHhhCCc
Q 013813 306 -----EETGCEGVLSAESLLENPA 324 (436)
Q Consensus 306 -----~~tGaDgVmIGRgal~nP~ 324 (436)
.. |||||++|+.++.-+.
T Consensus 632 ~~~~p~l-GAdGV~vGTrfl~t~E 654 (3089)
T 3zen_D 632 VHGYPLM-PIDGILVGTAAMATLE 654 (3089)
T ss_dssp TTTCCCC-CCSEEECSSTTTTCTT
T ss_pred ccCccCC-CCCEEEecHHHHhCcc
Confidence 54 9999999999988775
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-06 Score=79.45 Aligned_cols=131 Identities=21% Similarity=0.241 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc---CCChhhHHHHHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---FPNLQDTIKYAKML 248 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl---g~~~~d~~~~ak~l 248 (436)
..++-..++.|+|+||+.+ ++|.....+.+.+.+-+.++++.++-+ .+|+=+ ..+.++....++.+
T Consensus 74 ~~e~~~Ai~~GAdevd~vi----------nig~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia 142 (220)
T 1ub3_A 74 ALEAALACARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAA 142 (220)
T ss_dssp HHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecc----------cchhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHH
Confidence 3444466788999999975 256655677888888888888877433 555312 13456777888999
Q ss_pred HHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcc--eeeeehHHhh
Q 013813 249 EDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLE 321 (436)
Q Consensus 249 e~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaD--gVmIGRgal~ 321 (436)
.++|+|+|-.. |-+ ++.+..+.++.+++. .++||.++|||+|.+++.++++. |++ |+..|+.++.
T Consensus 143 ~eaGADfVKTsTGf~-------~~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~a-Ga~RiG~S~g~~I~~ 212 (220)
T 1ub3_A 143 IRGGADFLKTSTGFG-------PRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKA-GASRLGTSSGVALVA 212 (220)
T ss_dssp HHHTCSEEECCCSSS-------SCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHT-TCSEEEETTHHHHHC
T ss_pred HHhCCCEEEeCCCCC-------CCCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHC-CCcccchhHHHHHHH
Confidence 99999999432 221 134566667777764 47999999999999999999986 999 7777776543
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=83.36 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=95.1
Q ss_pred HHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe------ccCCC--------h
Q 013813 174 NAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI------RVFPN--------L 238 (436)
Q Consensus 174 ~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi------Rlg~~--------~ 238 (436)
++++ +.+.|+|.|+|... ..-+.+.+.++++++++ .++|+.+=. -.|.+ .
T Consensus 24 ~~~~~l~~~GaD~ielG~S--------------~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i~~G~dg~iiPdLp~ 88 (240)
T 1viz_A 24 EQLEILCESGTDAVIIGGS--------------DGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAIVPGFDLYFIPSVLN 88 (240)
T ss_dssp HHHHHHHTSCCSEEEECC------------------CHHHHHHHHHHHTT-SSSCEEEECSCGGGCCSCCSEEEEEEETT
T ss_pred HHHHHHHHcCCCEEEECCC--------------CCCCHHHHHHHHHHhhC-cCCCEEEecCccccccCCCCEEEEcccCc
Confidence 3344 35669999999861 12346778999999988 788988621 11211 1
Q ss_pred hhHHHH-----HHHHHHcC-----ccEEE----e-ccCcc-------------c--------------cc---CCCCCcc
Q 013813 239 QDTIKY-----AKMLEDAG-----CSLLA----V-HGRTR-------------D--------------EK---DGKKFRA 273 (436)
Q Consensus 239 ~d~~~~-----ak~le~aG-----~d~I~----V-HgRt~-------------~--------------~~---~~~~g~a 273 (436)
++..++ .+.+.+.| .+.|- + .+.+. . .. .......
T Consensus 89 ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~s~G~~~ 168 (240)
T 1viz_A 89 SKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGVLG 168 (240)
T ss_dssp BSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEECTTSCC
T ss_pred ccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEEeCCCccC
Confidence 222233 45567777 66654 3 11110 0 00 0101145
Q ss_pred CHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc-cchhhhh
Q 013813 274 DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA-LFAGFRT 331 (436)
Q Consensus 274 d~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~-lf~~i~~ 331 (436)
+.++++++++.+ ++||++.|||+|+++++++++ |||+|.+|+++..+|. ++++++.
T Consensus 169 ~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~--gAd~VIVGSa~v~~~~~~~~~v~~ 226 (240)
T 1viz_A 169 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE--HADVIVVGNAVYEDFDRALKTVAA 226 (240)
T ss_dssp CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT--TCSEEEECTHHHHCHHHHHTHHHH
T ss_pred hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh--CCCEEEEChHHHhCHHHHHHHHHH
Confidence 789999999999 999999999999999999775 8999999999999999 8887653
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-06 Score=87.40 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccc-cCChHHHHHHHHHHhccc--CccEEEEeccCCChhhH
Q 013813 166 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFL-MDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDT 241 (436)
Q Consensus 166 g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~L-l~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~ 241 (436)
..+++++++.++ .++.||..|-|+.|+|.. +..|... ..+++...+++++|++.+ ++++.|...-+++.+++
T Consensus 142 ~~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~----~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A 217 (412)
T 4e4u_A 142 YDDPDLAAECAAENVKLGFTAVKFDPAGPYT----AYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSA 217 (412)
T ss_dssp SSCHHHHHHHHHHHHHHTCSEEEECCSCCCB----TTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCc----cccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHH
Confidence 358999988775 557799999999998753 1112111 123566778889999887 58999998889999999
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
+++++.+++.|+++|. ++. . +.|++..+++++.+++||.+.+.+.+.++++++++...+|.|++--+-
T Consensus 218 ~~~~~~L~~~~i~~iE------eP~-~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~ 285 (412)
T 4e4u_A 218 IRLAKRLEKYDPLWFE------EPV-P---PGQEEAIAQVAKHTSIPIATGERLTTKYEFHKLLQAGGASILQLNVAR 285 (412)
T ss_dssp HHHHHHHGGGCCSEEE------CCS-C---SSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTT
T ss_pred HHHHHHhhhcCCcEEE------CCC-C---hhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccc
Confidence 9999999999999884 111 1 347899999999999999999999999999999998789999875433
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-06 Score=88.88 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=117.7
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhh-----hcC-ccccccc--CChHHHHHHHHHHhccc--C
Q 013813 157 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIA-----RRG-NYGAFLM--DNLPLVKSLVEKLALNL--N 225 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~-----~~~-~~Gs~Ll--~~p~~v~eIv~av~~~~--~ 225 (436)
..|+...+.+.+++++++.++ .++.||..|-|.+|++.... .++ .-|..+. +..+...+++++|++++ +
T Consensus 143 ~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d 222 (422)
T 3tji_A 143 AIPAYSHASGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWK 222 (422)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCC
Confidence 445656677889999998885 55779999999998742100 000 0111111 11456678889999887 6
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l 305 (436)
+++.|...-+++.++++++++.+++.|+.+|- +.. .+.+++..+++++.+++||++.+.+.+.+++++++
T Consensus 223 ~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~ll 292 (422)
T 3tji_A 223 LHILHDVHERLFPQQAVQLAKQLEPFQPYFIE-------DIL---PPQQSAWLEQVRQQSCVPLALGELFNNPAEWHDLI 292 (422)
T ss_dssp SEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CCS---CGGGGGGHHHHHHHCCCCEEECTTCCSGGGTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCeEE-------CCC---ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHH
Confidence 89999998899999999999999999999884 111 13467888999999999999999999999999999
Q ss_pred HhcCcceeeeehHHhhCC
Q 013813 306 EETGCEGVLSAESLLENP 323 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~nP 323 (436)
+...+|.|++--+-.+..
T Consensus 293 ~~ga~d~v~~k~~~~GGi 310 (422)
T 3tji_A 293 VNRRIDFIRCHVSQIGGI 310 (422)
T ss_dssp HTTCCSEECCCGGGGTSH
T ss_pred hcCCCCEEecCccccCCH
Confidence 988899998765444433
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.2e-06 Score=80.91 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=99.2
Q ss_pred CCEEEEecCC--CHHHHHHHHHHH-cCCCcEEEEec--CCCc---hhhhc-----CcccccccCChHHHHHHHHHHhccc
Q 013813 158 RPLFVQFCAN--DPEILLNAARRV-EPYCDYVDINL--GCPQ---RIARR-----GNYGAFLMDNLPLVKSLVEKLALNL 224 (436)
Q Consensus 158 ~plivQL~g~--d~e~~~~AA~~v-~~g~D~IdLN~--GCP~---~~~~~-----~~~Gs~Ll~~p~~v~eIv~av~~~~ 224 (436)
..++.=|... +.+...+.++.+ +.|+|.|||+. ..|. +...+ -..| -+.+.+.++++++++.+
T Consensus 17 ~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G----~~~~~~~~~v~~ir~~~ 92 (262)
T 2ekc_A 17 KALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNG----IRFEDVLELSETLRKEF 92 (262)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhhc
Confidence 3445444444 446777777655 45899999974 3332 01100 0011 24567788999999888
Q ss_pred -CccEEEEeccCCChh---hHHHHHHHHHHcCccEEEeccCcc---------------------cc--------------
Q 013813 225 -NVPVSCKIRVFPNLQ---DTIKYAKMLEDAGCSLLAVHGRTR---------------------DE-------------- 265 (436)
Q Consensus 225 -~iPVsVKiRlg~~~~---d~~~~ak~le~aG~d~I~VHgRt~---------------------~~-------------- 265 (436)
++|+.+ + ..++.- ....|++.+.++|+|+++++.-.. .+
T Consensus 93 ~~~Pi~~-m-~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a 170 (262)
T 2ekc_A 93 PDIPFLL-M-TYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAA 170 (262)
T ss_dssp TTSCEEE-E-CCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHC
T ss_pred CCCCEEE-E-ecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 899977 2 111111 124677778888888877632110 00
Q ss_pred --------cCCCCC---cc----CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 266 --------KDGKKF---RA----DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 266 --------~~~~~g---~a----d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
..+.+| +. ..+.++++++.+++||+..|||.+++++.+ +.. |||+|++|++++..
T Consensus 171 ~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~-gADgvIVGSai~~~ 240 (262)
T 2ekc_A 171 DEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IGS-FADGVVVGSALVKL 240 (262)
T ss_dssp SSCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHT-TSSEEEECHHHHHH
T ss_pred CCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHc-CCCEEEECHHHHhh
Confidence 000111 11 136788999988999999999999999999 655 89999999998764
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.5e-06 Score=83.91 Aligned_cols=134 Identities=12% Similarity=0.098 Sum_probs=107.7
Q ss_pred CCEEEEecC---CCHHHHHHHH-HHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEE
Q 013813 158 RPLFVQFCA---NDPEILLNAA-RRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSC 230 (436)
Q Consensus 158 ~plivQL~g---~d~e~~~~AA-~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsV 230 (436)
.|+...+.| .+++++.+.+ +.++. |+..|.+.+|++ +++.-.+.++++++.+ ++++.|
T Consensus 138 v~~y~s~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~v 202 (372)
T 3tj4_A 138 VEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHD---------------DPNIDIARLTAVRERVDSAVRIAI 202 (372)
T ss_dssp EEEEECTTCCTTSCHHHHHHHHHHHHHTTCCCEEEEECCCS---------------SHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEecCCccCCCHHHHHHHHHHHHHccCCCEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCcEEe
Confidence 455444333 3788888766 46678 999999998875 2455577888888887 589999
Q ss_pred EeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
+...+++.++++++++.+++.|+.+|- +. . .+.|++..+++++.+++||.+.+.+.+.+++.++++...+
T Consensus 203 Dan~~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~ 272 (372)
T 3tj4_A 203 DGNGKWDLPTCQRFCAAAKDLDIYWFE-------EP--L-WYDDVTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAV 272 (372)
T ss_dssp ECTTCCCHHHHHHHHHHTTTSCEEEEE-------SC--S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHHhhcCCCEEE-------CC--C-CchhHHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCC
Confidence 998899999999999999999988873 21 1 1357899999999999999999999999999999998789
Q ss_pred ceeeee
Q 013813 311 EGVLSA 316 (436)
Q Consensus 311 DgVmIG 316 (436)
|.|++-
T Consensus 273 d~v~~k 278 (372)
T 3tj4_A 273 AYVQPD 278 (372)
T ss_dssp SEECCC
T ss_pred CEEEeC
Confidence 988763
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=98.36 E-value=5.2e-06 Score=83.94 Aligned_cols=132 Identities=13% Similarity=0.168 Sum_probs=108.7
Q ss_pred CEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC
Q 013813 159 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 235 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg 235 (436)
|....+...+++++++.++ .++.|+..|-+..|+. ++.-.+.+++|++.+ ++++.|...-+
T Consensus 131 ~~~~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~----------------~~~d~~~v~avR~~~g~~~~l~vDaN~~ 194 (368)
T 3q45_A 131 QTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGS----------------KELDVERIRMIREAAGDSITLRIDANQG 194 (368)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCeEEEEecCC----------------HHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 4456777789999988775 5678999999998752 455567788888876 58899998889
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.++++++++.+++.|+++|- +. . .+.|++..+++++.+++||.+.+.+.+.++++++++...+|.|++
T Consensus 195 ~~~~~A~~~~~~l~~~~i~~iE-------qP--~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~ 264 (368)
T 3q45_A 195 WSVETAIETLTLLEPYNIQHCE-------EP--V-SRNLYTALPKIRQACRIPIMADESCCNSFDAERLIQIQACDSFNL 264 (368)
T ss_dssp BCHHHHHHHHHHHGGGCCSCEE-------CC--B-CGGGGGGHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred CChHHHHHHHHHHhhcCCCEEE-------CC--C-ChhHHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEe
Confidence 9999999999999999999884 21 1 134678889999999999999999999999999999888999986
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
-
T Consensus 265 k 265 (368)
T 3q45_A 265 K 265 (368)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=98.34 E-value=7e-06 Score=83.22 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=109.4
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+...+...+++++.+.++ .++.|+..|.+..|+. +++.-.+.+++|++.+ ++++.|....
T Consensus 136 v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan~ 200 (377)
T 3my9_A 136 IPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVK---------------PHAEELRILETMRGEFGERIDLRLDFNQ 200 (377)
T ss_dssp EEBCEEECCSSHHHHHHHHHHHTTTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------cHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 34555666678888776664 5567999999998752 2445567788888776 5899999998
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++++++.+++.|+++|- +. . .+.|++..+++++.+++||.+.+.+.+.+++.++++...+|.|+
T Consensus 201 ~~~~~~A~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ 270 (377)
T 3my9_A 201 ALTPFGAMKILRDVDAFRPTFIE-------QP--V-PRRHLDAMAGFAAALDTPILADESCFDAVDLMEVVRRQAADAIS 270 (377)
T ss_dssp CCCTTTHHHHHHHHHTTCCSCEE-------CC--S-CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEE
T ss_pred CcCHHHHHHHHHHHhhcCCCEEE-------CC--C-CccCHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEE
Confidence 99999999999999999998883 21 1 13479999999999999999999999999999999988899998
Q ss_pred eehHH
Q 013813 315 SAESL 319 (436)
Q Consensus 315 IGRga 319 (436)
+--+-
T Consensus 271 ~k~~~ 275 (377)
T 3my9_A 271 VKIMK 275 (377)
T ss_dssp CCHHH
T ss_pred ecccc
Confidence 75433
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.8e-07 Score=85.03 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=98.7
Q ss_pred CCCEEEEecCC--CHHHHHHHHHHHc-CCCcEEEEec--CCCch--hhhcCccccccc--CChHHHHHHHHHHhcccCcc
Q 013813 157 DRPLFVQFCAN--DPEILLNAARRVE-PYCDYVDINL--GCPQR--IARRGNYGAFLM--DNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 157 e~plivQL~g~--d~e~~~~AA~~v~-~g~D~IdLN~--GCP~~--~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~~~iP 227 (436)
...++.=|... +.+...+.++.+. .|+|.|||.+ .-|.- .+.....--+|. -+.+.+.++++++++. +|
T Consensus 13 ~~ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~P 90 (252)
T 3tha_A 13 ENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK--KA 90 (252)
T ss_dssp SSEEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS--SE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC--CC
Confidence 34466555444 5688888887664 5899999995 44541 111100011111 2457788888888765 67
Q ss_pred EEEEeccCCCh---hhHHHHHHHHHHcCccEEEe-----------------cc---------Cccc-----------c--
Q 013813 228 VSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAV-----------------HG---------RTRD-----------E-- 265 (436)
Q Consensus 228 VsVKiRlg~~~---~d~~~~ak~le~aG~d~I~V-----------------Hg---------Rt~~-----------~-- 265 (436)
+.+= ..++. -....|++.+.++|+|+++| || .+.. +
T Consensus 91 ivlm--~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFi 168 (252)
T 3tha_A 91 LVFM--VYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFI 168 (252)
T ss_dssp EEEE--CCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCE
T ss_pred EEEE--eccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeE
Confidence 7653 11111 12345777777777777776 11 1100 0
Q ss_pred ----cCCCCCcc------CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 266 ----KDGKKFRA------DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 266 ----~~~~~g~a------d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
..+-+|.. -.++++++++..++||+..+||+++++++++.+ +||||.||++++.
T Consensus 169 Y~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~--~ADGVIVGSAiVk 232 (252)
T 3tha_A 169 YLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK--VADGVIVGTSIVK 232 (252)
T ss_dssp EEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT--TSSEEEECHHHHH
T ss_pred EEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh--cCCEEEECHHHHH
Confidence 01112211 135788899888999999999999999998764 6999999999874
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-06 Score=89.69 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=91.8
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLED 250 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~ 250 (436)
..++..+++.|+|.|.+... + | +.+...+.++++++.+ ++|+..+- ..+ .+.++.+.+
T Consensus 235 ~~~a~~l~~~G~d~ivi~~a--------~--g-----~~~~~~~~i~~l~~~~p~~pvi~G~--v~t----~~~a~~~~~ 293 (491)
T 1zfj_A 235 FERAEALFEAGADAIVIDTA--------H--G-----HSAGVLRKIAEIRAHFPNRTLIAGN--IAT----AEGARALYD 293 (491)
T ss_dssp HHHHHHHHHHTCSEEEECCS--------C--T-----TCHHHHHHHHHHHHHCSSSCEEEEE--ECS----HHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeee--------c--C-----cchhHHHHHHHHHHHCCCCcEeCCC--ccC----HHHHHHHHH
Confidence 44444555669999998841 1 1 2345667788888887 88998651 112 255677889
Q ss_pred cCccEEEeccC------cccccCCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 251 AGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 251 aG~d~I~VHgR------t~~~~~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+|+++|.|... ++. ..+. +.+.++.+.++.+ ..++|||+.|||.+..|+.+++.. |||+|++||+++.
T Consensus 294 ~Gad~I~vg~g~g~~~~tr~-~~~~-~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~-GA~~v~vG~~~~~ 370 (491)
T 1zfj_A 294 AGVDVVKVGIGPGSICTTRV-VAGV-GVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAA-GGNAVMLGSMFAG 370 (491)
T ss_dssp TTCSEEEECSSCCTTBCHHH-HTCC-CCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTT
T ss_pred cCCCEEEECccCCcceEEee-ecCC-CCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHc-CCcceeeCHHhhC
Confidence 99999988310 111 0111 2345666666665 468999999999999999999986 9999999999998
Q ss_pred CCccch
Q 013813 322 NPALFA 327 (436)
Q Consensus 322 nP~lf~ 327 (436)
.++...
T Consensus 371 ~~e~~~ 376 (491)
T 1zfj_A 371 TDEAPG 376 (491)
T ss_dssp BSSCCC
T ss_pred CCcCcc
Confidence 766443
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.2e-06 Score=86.38 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
|.+++++++.++. ++.|+..|.|++|+ +++.-.+.+++|++.+ ++++.|....+++.++++
T Consensus 153 g~~~e~~~~~a~~~~~~G~~~iKlK~g~----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~ 216 (392)
T 3ddm_A 153 GINPENPEDVVARKAAEGYRAFKLKVGF----------------DDARDVRNALHVRELLGAATPLMADANQGWDLPRAR 216 (392)
T ss_dssp EECSSSHHHHHHHHHHHTCCCEEEECSS----------------CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence 4457888877754 56699999999874 3566678888888886 589999999999999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccC-HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad-~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++++.+++.|+++|- ++ . .+.| ++..+++++.+++||.+.+.+.+.++++++++...+|.|++-
T Consensus 217 ~~~~~L~~~~i~~iE------eP---~-~~~d~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 217 QMAQRLGPAQLDWLE------EP---L-RADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp HHHHHHGGGCCSEEE------CC---S-CTTSCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHhCCCEEE------CC---C-CccchHHHHHHHHHhcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999884 11 1 1346 899999999999999999999999999999998789998864
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.4e-06 Score=83.18 Aligned_cols=134 Identities=10% Similarity=0.214 Sum_probs=109.3
Q ss_pred CCEEEEecC---CCHHHHHHHHH-HHcC---CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccE
Q 013813 158 RPLFVQFCA---NDPEILLNAAR-RVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPV 228 (436)
Q Consensus 158 ~plivQL~g---~d~e~~~~AA~-~v~~---g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPV 228 (436)
.|+...+.+ .+++++++.++ .++. |+..|-+..|.+ +++.-.+.+++|++.+ ++++
T Consensus 158 v~~y~s~g~~~~~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l 222 (390)
T 3ugv_A 158 VKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRD---------------DPAVDIETAEAVWDAVGRDTAL 222 (390)
T ss_dssp EEEEECSCCCSSCHHHHHHHHHHHHHTTCTTCCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEE
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHhhhCCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEE
Confidence 455565555 68888887774 5678 999999998753 3555667788888876 5899
Q ss_pred EEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 229 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 229 sVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t 308 (436)
.|...-+++.++++++++.+++.|+.+|- +. . .+.|++..+++++.+++||.+.+.+.+.+++.++++..
T Consensus 223 ~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~ 292 (390)
T 3ugv_A 223 MVDFNQGLDMAEAMHRTRQIDDLGLEWIE-------EP--V-VYDNFDGYAQLRHDLKTPLMIGENFYGPREMHQALQAG 292 (390)
T ss_dssp EEECTTCCCHHHHHHHHHHHTTSCCSEEE-------CC--S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCEEE-------CC--C-CcccHHHHHHHHHhcCCCEEeCCCcCCHHHHHHHHHcC
Confidence 99998899999999999999999998883 21 1 13478999999999999999999999999999999987
Q ss_pred Ccceeeee
Q 013813 309 GCEGVLSA 316 (436)
Q Consensus 309 GaDgVmIG 316 (436)
.+|.|++-
T Consensus 293 a~d~v~ik 300 (390)
T 3ugv_A 293 ACDLVMPD 300 (390)
T ss_dssp CCSEECCB
T ss_pred CCCEEEeC
Confidence 89998865
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=81.93 Aligned_cols=135 Identities=12% Similarity=0.124 Sum_probs=109.7
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 157 DRPLFVQFCANDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~-~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
..|+...+...+++++++.++ .++. |+..|-+..|++ +++.-.+.++++++.+ ++++.|..
T Consensus 156 ~v~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l~vDa 220 (383)
T 3toy_A 156 PIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHG---------------DLATDEAMIKGLRALLGPDIALMLDF 220 (383)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ceEEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 345666655578998887775 5678 999999998753 3555667788888876 58899998
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.-+|+.++++++++.+++.|+.+|- +.. .+.|++..+++++.+++||.+.+.+.+.+++.++++...+|.
T Consensus 221 N~~~~~~~A~~~~~~l~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~ 290 (383)
T 3toy_A 221 NQSLDPAEATRRIARLADYDLTWIE-------EPV---PQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDF 290 (383)
T ss_dssp TTCSCHHHHHHHHHHHGGGCCSEEE-------CCS---CTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSE
T ss_pred CCCCCHHHHHHHHHHHHhhCCCEEE-------CCC---CcchHHHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCE
Confidence 8899999999999999999998883 211 134789999999999999999999999999999999878998
Q ss_pred eeee
Q 013813 313 VLSA 316 (436)
Q Consensus 313 VmIG 316 (436)
|++-
T Consensus 291 v~ik 294 (383)
T 3toy_A 291 IMPD 294 (383)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 8753
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=78.11 Aligned_cols=143 Identities=16% Similarity=0.132 Sum_probs=108.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
-+.|+..+=|..++.++.+| ...|+|+|=|+..+ + +.+.+.++++..++ .++-+.|-+.
T Consensus 119 v~lPVl~Kdfi~d~~qi~ea---~~~GAD~VlLi~a~--------------L-~~~~l~~l~~~a~~-lGl~~lvevh-- 177 (272)
T 3tsm_A 119 CSLPALRKDFLFDPYQVYEA---RSWGADCILIIMAS--------------V-DDDLAKELEDTAFA-LGMDALIEVH-- 177 (272)
T ss_dssp SSSCEEEESCCCSTHHHHHH---HHTTCSEEEEETTT--------------S-CHHHHHHHHHHHHH-TTCEEEEEEC--
T ss_pred cCCCEEECCccCCHHHHHHH---HHcCCCEEEEcccc--------------c-CHHHHHHHHHHHHH-cCCeEEEEeC--
Confidence 46888888777888765443 46799999998531 2 35677888877664 4777666642
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.+ + ++.+.++|++.|-+..|.-.. . ..|++...++.+.+ ++|||+.|||.|++|+.++.+. |+|+|
T Consensus 178 -~~e---E-l~~A~~~ga~iIGinnr~l~t---~--~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~-Ga~gv 246 (272)
T 3tsm_A 178 -DEA---E-MERALKLSSRLLGVNNRNLRS---F--EVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKS-GIGTF 246 (272)
T ss_dssp -SHH---H-HHHHTTSCCSEEEEECBCTTT---C--CBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTT-TCCEE
T ss_pred -CHH---H-HHHHHhcCCCEEEECCCCCcc---C--CCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHc-CCCEE
Confidence 222 2 455678999999998886432 2 46888888888876 6999999999999999999875 99999
Q ss_pred eeehHHhhCCccchhhh
Q 013813 314 LSAESLLENPALFAGFR 330 (436)
Q Consensus 314 mIGRgal~nP~lf~~i~ 330 (436)
.||++++..++.-..++
T Consensus 247 LVG~almr~~d~~~~~~ 263 (272)
T 3tsm_A 247 LIGESLMRQHDVAAATR 263 (272)
T ss_dssp EECHHHHTSSCHHHHHH
T ss_pred EEcHHHcCCcCHHHHHH
Confidence 99999999998766554
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7.4e-06 Score=82.81 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=107.1
Q ss_pred CCEEEEecCCCH-HHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 158 RPLFVQFCANDP-EILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~-e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
.|+...+...++ +.+.++++.++ .|+..+.|..|+. +++.-.+.+++|++.+ ++++.|+..
T Consensus 132 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan 196 (370)
T 1chr_A 132 IPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDVN 196 (370)
T ss_dssp EEBEEEECSSSHHHHHHHHHHHHHTTCCCEEEEECSSS---------------CSHHHHHHHHHHHHHSSTTCCEEEECT
T ss_pred eeEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEecCCC---------------CHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 344444554454 45667777776 6999999998752 3455677888888887 479999999
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
.+++.+++.++++.+++.|+++|. +.. .+.|++..+++++.+++||.+.+.+.+.+++.++++...+|.|
T Consensus 197 ~~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~~~~~~~~l~~~~~iPia~dE~~~~~~~~~~~~~~~~~d~v 266 (370)
T 1chr_A 197 QAWDEQVASVYIPELEALGVELIE-------QPV---GRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVF 266 (370)
T ss_dssp TCCCTTHHHHHTHHHHTTTEEEEE-------CCS---CTTCHHHHHHHHHHSCSEEEESSSCCSHHHHHHHHTTTSCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-------CCC---CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 999999999999999999998873 211 1457889999999999999999999999999999998789999
Q ss_pred eee
Q 013813 314 LSA 316 (436)
Q Consensus 314 mIG 316 (436)
++-
T Consensus 267 ~~k 269 (370)
T 1chr_A 267 SLK 269 (370)
T ss_dssp EEC
T ss_pred EEC
Confidence 875
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.8e-07 Score=85.61 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+++++|+.+.+.|++.+++-.-..... + ...+++.++++.+.+.+|+...|||+|.++++++|+. |||-|.+|+.
T Consensus 31 ~dP~~~a~~~~~~gad~lhvvDld~a~~-~--~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~-GadkVii~t~ 106 (243)
T 4gj1_A 31 YNPLKKFKEYEKAGAKELHLVDLTGAKD-P--SKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDC-GVKRVVIGSM 106 (243)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEHHHHHC-G--GGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHT-TCSEEEECTT
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccc-c--chhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHc-CCCEEEEccc
Confidence 5788999999999999998864433211 1 1567899999999999999999999999999999996 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 107 a~~~p~li~e~~~ 119 (243)
T 4gj1_A 107 AIKDATLCLEILK 119 (243)
T ss_dssp TTTCHHHHHHHHH
T ss_pred cccCCchHHHHHh
Confidence 9999999877653
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=98.29 E-value=7.9e-06 Score=84.30 Aligned_cols=149 Identities=11% Similarity=0.156 Sum_probs=114.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCccccc------------c-----c---CChHHHH
Q 013813 156 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAF------------L-----M---DNLPLVK 214 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~------------L-----l---~~p~~v~ 214 (436)
...|+...+.+.+++++++.++ .++.||..|-+..|-|... ..||.. . . ++.+...
T Consensus 137 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~---~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~ 213 (424)
T 3v3w_A 137 ERILSYTHANGKDLDSTLEAVRKAKDKGYKAIRVQCGIPGIA---KTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIP 213 (424)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCS---CCTTCC-----CCSCCBSSCCEEEECHHHHHHHHH
T ss_pred CceeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCcccc---ccccccccccccccccccccccccccchhHHHHHH
Confidence 3445555677889999998885 5677999999998864210 001110 0 0 1145677
Q ss_pred HHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc
Q 013813 215 SLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 292 (436)
Q Consensus 215 eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian 292 (436)
+++++|++.+ ++++.|...-+++.++++++++.+++.|+++|. +... +.+++..+++++.+++||++.
T Consensus 214 e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~~---~~d~~~~~~l~~~~~iPIa~d 283 (424)
T 3v3w_A 214 DVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWME-------DAVP---AENQESFKLIRQHTTTPLAVG 283 (424)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CCSC---CSSTTHHHHHHHHCCSCEEEC
T ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-------CCCC---hHhHHHHHHHHhhCCCCEEEc
Confidence 8889999887 689999988899999999999999999999884 1111 347788999999999999999
Q ss_pred cCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+.+.+.++++++++...+|.|++--
T Consensus 284 E~~~~~~~~~~~i~~ga~d~v~~k~ 308 (424)
T 3v3w_A 284 EVFNSIHDCRELIQNQWIDYIRTTI 308 (424)
T ss_dssp TTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred cCcCCHHHHHHHHHcCCCCeEeecc
Confidence 9999999999999987899998753
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=98.29 E-value=5.7e-06 Score=85.39 Aligned_cols=149 Identities=14% Similarity=0.114 Sum_probs=112.5
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCccccc---c--------------c---CChHHHHH
Q 013813 157 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAF---L--------------M---DNLPLVKS 215 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~---L--------------l---~~p~~v~e 215 (436)
..|+...+.+.+++++++.++ .++.||..|-+..|.|... ..||.. . . ++.+...+
T Consensus 139 ~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~---~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e 215 (425)
T 3vcn_A 139 GVTVYGHANGETIEDTIAEAVKYKAMGYKAIRLQTGVPGLA---STYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPK 215 (425)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCS---CCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHH
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeecCcccc---ccccccccccccCcccccccccccccchhHHHHHHH
Confidence 445555667889999998885 5677999999998874310 001100 0 0 00234567
Q ss_pred HHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 216 LVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 216 Iv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
++++|++.+ ++++.|...-+++.++++++++.+++.|+++|. +... +.+++..+++++.+++||++.+
T Consensus 216 ~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~~---~~d~~~~~~l~~~~~iPIa~dE 285 (425)
T 3vcn_A 216 LFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLE-------DSVP---AENQAGFRLIRQHTTTPLAVGE 285 (425)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CCSC---CSSTTHHHHHHHHCCSCEEECT
T ss_pred HHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CCCC---hhhHHHHHHHHhcCCCCEEeCC
Confidence 788888876 589999988899999999999999999999884 1111 3477889999999999999999
Q ss_pred CCCCHHHHHHHHHhcCcceeeeehH
Q 013813 294 NVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 294 GI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+.+.++++++++...+|.|++--+
T Consensus 286 ~~~~~~~~~~~i~~~a~d~v~~k~~ 310 (425)
T 3vcn_A 286 IFAHVWDAKQLIEEQLIDYLRATVL 310 (425)
T ss_dssp TCCSGGGTHHHHHTTCCSEECCCTT
T ss_pred CcCCHHHHHHHHHcCCCCeEecChh
Confidence 9999999999999878999987543
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=8.4e-06 Score=83.12 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=115.2
Q ss_pred CCEEEEec----CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEE-
Q 013813 158 RPLFVQFC----ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS- 229 (436)
Q Consensus 158 ~plivQL~----g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVs- 229 (436)
.|+...++ +.+++.+++.++ .++.|+..|.|++|| +++.-.+.+++|++.+ ++++.
T Consensus 128 v~~y~t~~~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avR~a~g~~~~l~~ 191 (391)
T 3gd6_A 128 IKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGK----------------NLDADEEFLSRVKEEFGSRVRIKS 191 (391)
T ss_dssp EEBCEEECCCSSTTHHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHGGGCEEEE
T ss_pred EEeeEEecccccCCCHHHHHHHHHHHHHcCCCEEEEeeCC----------------CHHHHHHHHHHHHHHcCCCCcEEE
Confidence 45556677 678999888875 557799999999876 2455677888888876 57888
Q ss_pred EEeccCCChhhHHHHHHHHHHcCc--cEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 230 CKIRVFPNLQDTIKYAKMLEDAGC--SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 230 VKiRlg~~~~d~~~~ak~le~aG~--d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
|...-+++.+++.++++.+++.|+ .+|. ++. .+.|++..+++++.+++|| .+.+.+.++++++++.
T Consensus 192 vDan~~~~~~~A~~~~~~l~~~~i~~~~iE------qP~----~~~d~~~~~~l~~~~~iPI--dE~~~~~~~~~~~~~~ 259 (391)
T 3gd6_A 192 YDFSHLLNWKDAHRAIKRLTKYDLGLEMIE------SPA----PRNDFDGLYQLRLKTDYPI--SEHVWSFKQQQEMIKK 259 (391)
T ss_dssp EECTTCSCHHHHHHHHHHHTTCCSSCCEEE------CCS----CTTCHHHHHHHHHHCSSCE--EEECCCHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHHhcCCCcceec------CCC----ChhhHHHHHHHHHHcCCCc--CCCCCCHHHHHHHHHc
Confidence 998889999999999999999999 7774 111 1347999999999999999 8889999999999998
Q ss_pred cCcceeeeehHHhhCCccchh
Q 013813 308 TGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 308 tGaDgVmIGRgal~nP~lf~~ 328 (436)
..+|.|++--+-++...-+.+
T Consensus 260 ~~~d~v~~k~~~~GGit~~~~ 280 (391)
T 3gd6_A 260 DAIDIFNISPVFIGGLTSAKK 280 (391)
T ss_dssp TCCSEEEECHHHHTSHHHHHH
T ss_pred CCCCEEEECchhcCCHHHHHH
Confidence 889999998777766554433
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.4e-06 Score=83.00 Aligned_cols=128 Identities=11% Similarity=0.066 Sum_probs=101.1
Q ss_pred CEEEEecC-CCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 159 PLFVQFCA-NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 159 plivQL~g-~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
|+...++. .+++++.+.|+. ++.||+.|.|+.| |+...++++++++.+ ++++.+...-
T Consensus 131 ~~~~~~g~~~~~~~~~~~a~~~~~~Gf~~vKik~~------------------~~~~~e~v~avr~~~g~~~~l~vDan~ 192 (368)
T 1sjd_A 131 PCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE------------------PGWDVEPVRAVRERFGDDVLLQVDANT 192 (368)
T ss_dssp EBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB------------------TTBSHHHHHHHHHHHCTTSEEEEECTT
T ss_pred cceEEeeCCCCHHHHHHHHHHHHHhCccEEEEecC------------------chhHHHHHHHHHHhcCCCceEEEeccC
Confidence 44444443 489999888864 5679999999863 233346677777665 4788888877
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++ +++++.+++.|+++|- +. . .+.||+..+++++.+++||++.+.+.+.++++++++...+|.|+
T Consensus 193 ~~~~~~-~~~~~~l~~~~i~~iE-------~P--~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ 261 (368)
T 1sjd_A 193 AYTLGD-APQLARLDPFGLLLIE-------QP--L-EEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVN 261 (368)
T ss_dssp CCCGGG-HHHHHTTGGGCCSEEE-------CC--S-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred CCCHHH-HHHHHHHHhcCCCeEe-------CC--C-ChhhHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEEE
Confidence 899899 9999999999999873 21 1 13589999999999999999999999999999999987899998
Q ss_pred e
Q 013813 315 S 315 (436)
Q Consensus 315 I 315 (436)
+
T Consensus 262 i 262 (368)
T 1sjd_A 262 I 262 (368)
T ss_dssp E
T ss_pred e
Confidence 7
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-05 Score=81.06 Aligned_cols=135 Identities=12% Similarity=0.101 Sum_probs=108.2
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 157 DRPLFVQFCANDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~-~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
..|+...+...+++++++.++ .++. |+..|-+..|+.. .+.-.+++++|++.+ ++++.|..
T Consensus 128 ~v~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~K~g~~~---------------~~~d~~~v~avR~a~g~~~~l~vDa 192 (367)
T 3dg3_A 128 RMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRP---------------VQLDTAVVRALRERFGDAIELYVDG 192 (367)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHHHHHHCCCEEEEECCCSS---------------THHHHHHHHHHHHHHGGGSEEEEEC
T ss_pred eEEEEEEecCCCHHHHHHHHHHHHHhcCccEEEEeeCCCh---------------hhhHHHHHHHHHHHhCCCCEEEEEC
Confidence 345666777788999887774 5677 9999999987511 013456777777776 57899998
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.-+++.+++.++++.+++.|+++|. ++. .+.|++..+++++.+++||.+.+.+.+.+++.++++...+|.
T Consensus 193 n~~~~~~~a~~~~~~l~~~~i~~iE------qP~----~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~ 262 (367)
T 3dg3_A 193 NRGWSAAESLRAMREMADLDLLFAE------ELC----PADDVLSRRRLVGQLDMPFIADESVPTPADVTREVLGGSATA 262 (367)
T ss_dssp TTCSCHHHHHHHHHHTTTSCCSCEE------SCS----CTTSHHHHHHHHHHCSSCEEECTTCSSHHHHHHHHHHTSCSE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEE------CCC----CcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCE
Confidence 8899999999999999999998874 111 134788899999999999999999999999999999878999
Q ss_pred eeee
Q 013813 313 VLSA 316 (436)
Q Consensus 313 VmIG 316 (436)
|++=
T Consensus 263 v~~k 266 (367)
T 3dg3_A 263 ISIK 266 (367)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9874
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=3e-06 Score=80.40 Aligned_cols=149 Identities=15% Similarity=0.276 Sum_probs=100.8
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~ 238 (436)
++.+|...|...+.+.++.+. .|+|.|.+-.- . |..+ .+...-.++++++++.++.|+.|-+=. .+.
T Consensus 7 i~psila~D~~~l~~~i~~~~~~Gad~ihldi~-------D---G~fv-p~~~~g~~~v~~lr~~~~~~~~vhlmv-~dp 74 (230)
T 1tqj_A 7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDVM-------D---GRFV-PNITIGPLIVDAIRPLTKKTLDVHLMI-VEP 74 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEE-------B---SSSS-SCBCBCHHHHHHHGGGCCSEEEEEEES-SSG
T ss_pred EEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEE-------e---cCCC-cchhhhHHHHHHHHhhcCCcEEEEEEc-cCH
Confidence 678899999999999998775 58998766531 0 1111 112222377788888777777755433 222
Q ss_pred hhHHHHHHHHHHcCccEEEeccC--cccc--------------------------c-----------------CCCC---
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGR--TRDE--------------------------K-----------------DGKK--- 270 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgR--t~~~--------------------------~-----------------~~~~--- 270 (436)
.++++.+.++|+|+|++|.- ..+. . .+..
T Consensus 75 ---~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~ggq~ 151 (230)
T 1tqj_A 75 ---EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQS 151 (230)
T ss_dssp ---GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----CC
T ss_pred ---HHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCCcc
Confidence 23556677788888888765 2100 0 0000
Q ss_pred -CccCHHHHHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 271 -FRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 271 -g~ad~~~i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.+..++.++++++.. ++||.+-|||+. +.+.++.+. |||+|.+|++++..++.
T Consensus 152 ~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~a-Gad~vvvGSai~~a~d~ 210 (230)
T 1tqj_A 152 FIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEA-GANAIVAGSAVFNAPNY 210 (230)
T ss_dssp CCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHH-TCCEEEESHHHHTSSCH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHc-CCCEEEECHHHHCCCCH
Confidence 123467788888876 899999999997 999998875 99999999999987764
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-05 Score=80.28 Aligned_cols=138 Identities=13% Similarity=0.146 Sum_probs=109.7
Q ss_pred CCCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
..|+...+...+++.+.+.+ +.++.|+..|-+..|+. +++.-.+.++++++.+ ++++.|....
T Consensus 137 ~v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~~~~~l~vDan~ 201 (385)
T 3i6e_A 137 TIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFR---------------DHAFDIMRLELIARDFPEFRVRVDYNQ 201 (385)
T ss_dssp EEEBEEEECCSSHHHHHHHHHHHHHHTCCEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred ceEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 34566677777888877655 45667999999998752 2444566777777765 6789999999
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+|+.++++++++.+++.|+.+|- +.. .+.||+..+++++.+++||.+...+.+.+++.++++...+|.|+
T Consensus 202 ~~~~~~A~~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~ 271 (385)
T 3i6e_A 202 GLEIDEAVPRVLDVAQFQPDFIE-------QPV---RAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVS 271 (385)
T ss_dssp CCCGGGHHHHHHHHHTTCCSCEE-------CCS---CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEE-------CCC---CcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEE
Confidence 99999999999999999998873 211 13579999999999999999999999999999999988899998
Q ss_pred eehHH
Q 013813 315 SAESL 319 (436)
Q Consensus 315 IGRga 319 (436)
+--+-
T Consensus 272 ~k~~~ 276 (385)
T 3i6e_A 272 IKIMK 276 (385)
T ss_dssp ECHHH
T ss_pred ecccc
Confidence 76433
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-05 Score=79.64 Aligned_cols=140 Identities=12% Similarity=0.171 Sum_probs=115.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 156 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
...|+...+...+++++++.++ .++.|+..|.+.+||+.. ..+++.-.+.+++|++.+ ++++.|..
T Consensus 133 ~~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~-----------~~~~~~d~~~v~avR~a~G~~~~L~vDa 201 (386)
T 3fv9_G 133 GPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEA-----------EGGPALDAERITACLADRQPGEWYLADA 201 (386)
T ss_dssp SCBCEEEEECSCCHHHHHHHHHHHHHTTCCEEEEECCCCTT-----------TTHHHHHHHHHHHHTTTCCTTCEEEEEC
T ss_pred CceeeeEecCCCCHHHHHHHHHHHHHCCCCEEEEeccCCCC-----------CCCHHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 4567888888999999988885 457799999999998732 124666778899999987 57899999
Q ss_pred ccCCChhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 233 RVFPNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
.-+++.+++.++++.+ ++.++ +| ++ .. + +|+..+++++.+++||.+...+.+.+++.++++...+|
T Consensus 202 N~~~~~~~A~~~~~~l~~~~~i-~i-------Ee--P~--~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d 268 (386)
T 3fv9_G 202 NNGLTVEHALRMLSLLPPGLDI-VL-------EA--PC--A-SWAETKSLRARCALPLLLDELIQTETDLIAAIRDDLCD 268 (386)
T ss_dssp TTCCCHHHHHHHHHHSCSSCCC-EE-------EC--CC--S-SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCHHHHHHHHHHhhccCCc-EE-------ec--CC--C-CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCC
Confidence 8899999999999999 77776 65 22 11 2 78999999999999999999999999999999988899
Q ss_pred eeeeehHH
Q 013813 312 GVLSAESL 319 (436)
Q Consensus 312 gVmIGRga 319 (436)
.|++--+-
T Consensus 269 ~v~~k~~~ 276 (386)
T 3fv9_G 269 GVGLKVSK 276 (386)
T ss_dssp EEEEEHHH
T ss_pred EEEECccc
Confidence 99876443
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.7e-06 Score=79.85 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=70.6
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.++...+|...+-.|...|-+.+ +.. ..+.+.++++++.+ ++||++.|||+|++++++++ . |||+|++
T Consensus 138 ~~e~~~~~a~~a~~~g~~~VYld~-sG~-------~~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~-gAD~VVV 207 (228)
T 3vzx_A 138 NMDDIVAYARVSELLQLPIFYLEY-SGV-------LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-E-HADVIVV 207 (228)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-TTS-------CCCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-T-TCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CCC-------cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-h-CCCEEEE
Confidence 346677778878888888887776 321 12789999999999 79999999999999999988 5 9999999
Q ss_pred ehHHhhCCccchhhh
Q 013813 316 AESLLENPALFAGFR 330 (436)
Q Consensus 316 GRgal~nP~lf~~i~ 330 (436)
|.++..||.++.++-
T Consensus 208 GSa~v~~p~~~~~~v 222 (228)
T 3vzx_A 208 GNAVYEDFDRALKTV 222 (228)
T ss_dssp CTHHHHCHHHHHHHH
T ss_pred ChHHhcCHHHHHHHH
Confidence 999999999988664
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.2e-06 Score=85.32 Aligned_cols=103 Identities=18% Similarity=0.310 Sum_probs=79.3
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
+++.+.++++.+++. +.++.++++. .+..++++.+.++|+|.|.+|++...+....+ ..+|+.+..+++.+++|
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~----~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~-~~~~~~i~~l~~~~~~p 213 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSP----QNVREIAPIVIKAGADLLVIQGTLISAEHVNT-GGEALNLKEFIGSLDVP 213 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECT----TTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC------CHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCC----ccHHHHHHHHHHCCCCEEEEeCCccccccCCC-cccHHHHHHHHHhcCCC
Confidence 789999999998876 8999999764 24466788888899999999977532211111 12687889999999999
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
|++ |||.|+++++.+++ .|||+|++|+|.
T Consensus 214 vi~-ggi~t~e~a~~~~~-~Gad~i~vg~Gg 242 (393)
T 2qr6_A 214 VIA-GGVNDYTTALHMMR-TGAVGIIVGGGE 242 (393)
T ss_dssp EEE-ECCCSHHHHHHHHT-TTCSEEEESCCS
T ss_pred EEE-CCcCCHHHHHHHHH-cCCCEEEECCCc
Confidence 999 99999999999887 499999998754
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.6e-06 Score=82.94 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
..++...+..|...+-+-+.. .+.+.+.++++++.+ ++||++.|||+|.++++++++. |||+|.+|+++
T Consensus 189 ~aYa~~gad~G~~lV~LD~~~--------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~a-GAD~VVVGSAa 259 (286)
T 3vk5_A 189 DRYLHVARAFGFHMVYLYSRN--------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDS-GADYVGFAGAL 259 (286)
T ss_dssp HHHHHHHHHTTCSEEEEECSS--------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHT-TCSEEEESGGG
T ss_pred HHHHHHHHHcCCCEEEEcCCC--------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHc-CCCEEEECchh
Confidence 677887888898888776422 146789999999999 8999999999999999999986 99999999999
Q ss_pred hhC--Cccchhhh
Q 013813 320 LEN--PALFAGFR 330 (436)
Q Consensus 320 l~n--P~lf~~i~ 330 (436)
+.| |.++.++.
T Consensus 260 v~d~~Pelv~e~a 272 (286)
T 3vk5_A 260 EQPDWRSALAEIA 272 (286)
T ss_dssp SSTTHHHHHHHHH
T ss_pred hcCCCHHHHHHHH
Confidence 999 77887765
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.23 E-value=9.1e-06 Score=76.63 Aligned_cols=144 Identities=9% Similarity=0.113 Sum_probs=95.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+.|+.+-|+.+|++.+.+.+ ++.|+|+|-+|.+.. ++.+.++++.+++. ++.+.+-+....
T Consensus 64 ~~~~~v~lmv~d~~~~i~~~--~~agad~v~vH~~~~----------------~~~~~~~~~~i~~~-g~~igv~~~p~t 124 (228)
T 1h1y_A 64 KAYLDCHLMVTNPSDYVEPL--AKAGASGFTFHIEVS----------------RDNWQELIQSIKAK-GMRPGVSLRPGT 124 (228)
T ss_dssp CSEEEEEEESSCGGGGHHHH--HHHTCSEEEEEGGGC----------------TTTHHHHHHHHHHT-TCEEEEEECTTS
T ss_pred CCcEEEEEEecCHHHHHHHH--HHcCCCEEEECCCCc----------------ccHHHHHHHHHHHc-CCCEEEEEeCCC
Confidence 56899999999998776555 336899999995421 11124555666543 566665543333
Q ss_pred ChhhHHHHHHHHHHc--CccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 237 NLQDTIKYAKMLEDA--GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 237 ~~~d~~~~ak~le~a--G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
..+ .++.+.+. ++|+|.+...........-.+..++.++++++.. ++||++.|||+. +.+.++++. |+|+|
T Consensus 125 ~~e----~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~~a-GaD~v 198 (228)
T 1h1y_A 125 PVE----EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASA-GANCI 198 (228)
T ss_dssp CGG----GGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHH-TCCEE
T ss_pred CHH----HHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHHHc-CCCEE
Confidence 322 23344455 8999987444321110001123456677888877 899999999997 889888876 99999
Q ss_pred eeehHHhhCCcc
Q 013813 314 LSAESLLENPAL 325 (436)
Q Consensus 314 mIGRgal~nP~l 325 (436)
.+|++++..++.
T Consensus 199 vvGsai~~~~d~ 210 (228)
T 1h1y_A 199 VAGSSIFGAAEP 210 (228)
T ss_dssp EESHHHHTSSCH
T ss_pred EECHHHHCCCCH
Confidence 999999887663
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-05 Score=75.41 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=87.7
Q ss_pred HHHHHcCCCcEEEEec--CCCchhhhcCcccccccCChHHHHHHHHHHhcc---cCccEEEEecc-CC------ChhhHH
Q 013813 175 AARRVEPYCDYVDINL--GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN---LNVPVSCKIRV-FP------NLQDTI 242 (436)
Q Consensus 175 AA~~v~~g~D~IdLN~--GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~---~~iPVsVKiRl-g~------~~~d~~ 242 (436)
+.+.++.|+|+|++.. |. .+.+.+.+.++++++. .++||.+=..+ |. +.+...
T Consensus 98 ve~Ai~~Ga~~v~~~~nig~---------------~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~ 162 (263)
T 1w8s_A 98 VEEAVSLGASAVGYTIYPGS---------------GFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVA 162 (263)
T ss_dssp HHHHHHTTCSEEEEEECTTS---------------TTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCC---------------cCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHH
Confidence 3345678999999854 41 1223333333333332 37888776544 11 334445
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC-cEEEccCCC--CHHHHHHHHH---hcCcceeeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVR--HMEDVQKCLE---ETGCEGVLSA 316 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i-PVianGGI~--s~eda~~~l~---~tGaDgVmIG 316 (436)
..++.+.++|+|+|-+. +. .+.+.++++++.+++ ||++.|||+ +.+++.+++. ..|++|+.+|
T Consensus 163 ~a~~~a~~~GAD~vkt~--~~---------~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvg 231 (263)
T 1w8s_A 163 YAARIALELGADAMKIK--YT---------GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVG 231 (263)
T ss_dssp HHHHHHHHHTCSEEEEE--CC---------SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHcCCCEEEEc--CC---------CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 55788999999998665 11 146788898888777 999999999 9999988873 2599999999
Q ss_pred hHHhhCCccch
Q 013813 317 ESLLENPALFA 327 (436)
Q Consensus 317 Rgal~nP~lf~ 327 (436)
|+++..|+.-.
T Consensus 232 raI~~~~dp~~ 242 (263)
T 1w8s_A 232 RNVWQRRDALK 242 (263)
T ss_dssp HHHHTSTTHHH
T ss_pred hhhcCCcCHHH
Confidence 99998887543
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.6e-06 Score=97.28 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC------CCCCccCHHHHHHH
Q 013813 209 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKAV 281 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~------~~~g~ad~~~i~~i 281 (436)
+++.+.++++.+++.. ++||.||+=... .....|+.+.++|+|+|+|.|....... ...|.+-...+.++
T Consensus 976 s~edl~~~I~~Lk~~~~~~PV~VKlv~~~---gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev 1052 (1479)
T 1ea0_A 976 SIEDLAQLIYDLKQINPDAKVTVKLVSRS---GIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEV 1052 (1479)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEEECCT---THHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCCC---ChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHH
Confidence 3567889999999887 899999965432 3334688899999999999655322100 00112223456666
Q ss_pred HhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 282 KNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 282 k~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
.+.+ ++|||+.|||.+..|+.+++.. |||+|++||++|...
T Consensus 1053 ~~al~~~glr~~VpVIAdGGIrtG~DVakALaL-GAdaV~iGTafL~a~ 1100 (1479)
T 1ea0_A 1053 HQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAML-GAEEFGIGTASLIAM 1100 (1479)
T ss_dssp HHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHT-TCSEEECCHHHHHHH
T ss_pred HHHHHHcCCCCCceEEEECCCCCHHHHHHHHHc-CCCeeeEcHHHHHHH
Confidence 6543 6999999999999999999997 999999999997643
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-05 Score=77.74 Aligned_cols=135 Identities=15% Similarity=0.199 Sum_probs=110.2
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+...++..+++++++.++ .++.||..|-+..|. +++.-.+.++++++.+ ++++.|...-
T Consensus 132 v~~y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~----------------~~~~d~~~v~avR~a~g~~~~L~vDaN~ 195 (379)
T 3r0u_A 132 IVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGA----------------DFNRDIQLLKALDNEFSKNIKFRFDANQ 195 (379)
T ss_dssp EEBCEEECCCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHCCTTSEEEEECTT
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHcCCCEEeeecCC----------------CHHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 45556777789998887775 567799999999763 3566677888898887 4799999888
Q ss_pred CCChhhHHHHHHHHHH--cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 235 FPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 235 g~~~~d~~~~ak~le~--aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
+++.++++.+++.+++ .|+.+|- +.. .+.|++..+++++.+++||.++..+.+.+++.++++...+|.
T Consensus 196 ~w~~~~A~~~~~~l~~~~~~l~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~ 265 (379)
T 3r0u_A 196 GWNLAQTKQFIEEINKYSLNVEIIE-------QPV---KYYDIKAMAEITKFSNIPVVADESVFDAKDAERVIDEQACNM 265 (379)
T ss_dssp CCCHHHHHHHHHHHHTSCCCEEEEE-------CCS---CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCSE
T ss_pred CcCHHHHHHHHHHHhhcCCCcEEEE-------CCC---CcccHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCE
Confidence 9999999999999999 7777763 211 134789999999999999999999999999999999877999
Q ss_pred eeeehH
Q 013813 313 VLSAES 318 (436)
Q Consensus 313 VmIGRg 318 (436)
|++--+
T Consensus 266 v~~k~~ 271 (379)
T 3r0u_A 266 INIKLA 271 (379)
T ss_dssp EEECHH
T ss_pred EEECcc
Confidence 987543
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-05 Score=79.88 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=115.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCch------hhh-----cCc------------ccccc--cCC
Q 013813 156 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQR------IAR-----RGN------------YGAFL--MDN 209 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~------~~~-----~~~------------~Gs~L--l~~ 209 (436)
+..|+...+.+.+++++++.++ .++.||..|-+.+|-... +.+ .+. -|..+ ..+
T Consensus 143 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (440)
T 3t6c_A 143 DGIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAY 222 (440)
T ss_dssp SSEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHH
T ss_pred CeeEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhh
Confidence 3445555677889999998885 557799999999874210 000 000 00000 001
Q ss_pred hHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC
Q 013813 210 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 287 (436)
Q Consensus 210 p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i 287 (436)
.+...+++++|++++ ++++.|+...+++.++++++++.+++.|+.+|- +... +.|++..+++++.+++
T Consensus 223 ~~~d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------eP~~---~~d~~~~~~l~~~~~i 292 (440)
T 3t6c_A 223 AKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLE-------DPVA---PENTEWLKMLRQQSST 292 (440)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------CSSC---GGGGGGHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------CCCC---hhhHHHHHHHHhhcCC
Confidence 356677889999887 589999999999999999999999999999883 2111 3467888999999999
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
||.+.+.+.+.+++.++++...+|.|++--+-.+.
T Consensus 293 PIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GG 327 (440)
T 3t6c_A 293 PIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGG 327 (440)
T ss_dssp CEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTS
T ss_pred CEEeCcccCCHHHHHHHHHcCCccceeechhhhCC
Confidence 99999999999999999998889999876544443
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-06 Score=78.26 Aligned_cols=78 Identities=13% Similarity=0.214 Sum_probs=59.2
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.+.+.|+|+|.+......+......+.+|+.++++++..++||++.||| +.+++.++++. |+|+|++|++++.+++
T Consensus 123 ~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~-Ga~gv~vgs~i~~~~d 200 (221)
T 1yad_A 123 AVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQA-GADGIAVMSGIFSSAE 200 (221)
T ss_dssp HHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHT-TCSEEEESHHHHTSSS
T ss_pred HHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHc-CCCEEEEhHHhhCCCC
Confidence 456678999999886542221111111467899999998889999999999 89999999985 9999999999987765
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=75.79 Aligned_cols=141 Identities=17% Similarity=0.209 Sum_probs=99.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
-+.|+..+=|-.++.++.+ ..+.|+|+|-|... .+. +.+.++++..+. .++.+.|-+.
T Consensus 105 v~lPvl~kdfI~d~~qi~~---a~~~GAD~VlL~~~--------------~l~--~~l~~l~~~a~~-lGl~~lvev~-- 162 (254)
T 1vc4_A 105 VDLPLLRKDFVVDPFMLEE---ARAFGASAALLIVA--------------LLG--ELTGAYLEEARR-LGLEALVEVH-- 162 (254)
T ss_dssp CCSCEEEESCCCSHHHHHH---HHHTTCSEEEEEHH--------------HHG--GGHHHHHHHHHH-HTCEEEEEEC--
T ss_pred cCCCEEECCcCCCHHHHHH---HHHcCCCEEEECcc--------------chH--HHHHHHHHHHHH-CCCeEEEEEC--
Confidence 3678777766677765443 34569999988732 222 456777765443 3544444322
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGa 310 (436)
+.++ ++.+.+.|++.|-++.|.... ...|++...++.+.+ ++|+++.|||.|++|+.++.+ |+
T Consensus 163 -~~~E----~~~a~~~gad~IGvn~~~l~~-----~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~--Ga 230 (254)
T 1vc4_A 163 -TERE----LEIALEAGAEVLGINNRDLAT-----LHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG--LF 230 (254)
T ss_dssp -SHHH----HHHHHHHTCSEEEEESBCTTT-----CCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT--TC
T ss_pred -CHHH----HHHHHHcCCCEEEEccccCcC-----CCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc--CC
Confidence 2233 335677899999998886431 256777777777765 799999999999999999886 99
Q ss_pred ceeeeehHHhhCCccchhhh
Q 013813 311 EGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 311 DgVmIGRgal~nP~lf~~i~ 330 (436)
|+|.||++++..++.-..++
T Consensus 231 ~gvlVGsAl~~~~d~~~~~~ 250 (254)
T 1vc4_A 231 DAVLIGTSLMRAPDLEAALR 250 (254)
T ss_dssp SEEEECHHHHTSSCHHHHHH
T ss_pred CEEEEeHHHcCCCCHHHHHH
Confidence 99999999999888765443
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=82.21 Aligned_cols=150 Identities=11% Similarity=0.137 Sum_probs=109.2
Q ss_pred CCCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhh---cCcccc--------cc--------cCChHHHHHH
Q 013813 157 DRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIAR---RGNYGA--------FL--------MDNLPLVKSL 216 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~---~~~~Gs--------~L--------l~~p~~v~eI 216 (436)
..|+.....+.+++++.+.+ +.++.||..|-+..|.|..... ..+.|- .+ ....++..++
T Consensus 138 ~v~~y~~~~~~~~~~~~~~~~~~~~~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 217 (426)
T 4e4f_A 138 GVMVYCHTTGHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKL 217 (426)
T ss_dssp SEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHH
T ss_pred ceeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 34666677788888877666 4567899999999987642100 000000 00 0012456688
Q ss_pred HHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC
Q 013813 217 VEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 294 (436)
Q Consensus 217 v~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG 294 (436)
+++|++++ ++++.|...-+++.++++++++.+++.|+++|. +... +.|++..+++++.+++||.+.+.
T Consensus 218 v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------eP~~---~~d~~~~~~l~~~~~iPIa~dE~ 287 (426)
T 4e4f_A 218 FEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWME-------DPTP---AENQACFRLIRQHTVTPIAVGEV 287 (426)
T ss_dssp HHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------CCSC---CSSGGGGHHHHTTCCSCEEECTT
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEE-------CCCC---hHHHHHHHHHHhcCCCCEEeCCC
Confidence 99999887 689999998899999999999999999999884 1111 34678889999999999999999
Q ss_pred CCCHHHHHHHHHhcCcceeeee
Q 013813 295 VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIG 316 (436)
+.+.++++++++...+|.|++-
T Consensus 288 ~~~~~~~~~~i~~ga~d~v~~k 309 (426)
T 4e4f_A 288 FNSIWDCKQLIEEQLIDYIRTT 309 (426)
T ss_dssp CCSGGGTHHHHHTTCCSEECCC
T ss_pred cCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999998789999864
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=83.91 Aligned_cols=123 Identities=19% Similarity=0.150 Sum_probs=81.7
Q ss_pred HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-C-ccEEEEeccCCChhhHHHHHHHHHHcCcc
Q 013813 177 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-N-VPVSCKIRVFPNLQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 177 ~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d 254 (436)
.+++.+++.|.+.... | ++..+.+.++.+++.. + +||.++--. + .+-++.+.++|+|
T Consensus 249 ~l~e~gv~~l~Vd~~~----------g-----~~~~~~~~i~~lk~~~~~~~~Vi~G~V~--t----~~~a~~l~~aGad 307 (503)
T 1me8_A 249 ALVEAGADVLCIDSSD----------G-----FSEWQKITIGWIREKYGDKVKVGAGNIV--D----GEGFRYLADAGAD 307 (503)
T ss_dssp HHHHHTCSEEEECCSC----------C-----CSHHHHHHHHHHHHHHGGGSCEEEEEEC--S----HHHHHHHHHHTCS
T ss_pred HHHhhhccceEEeccc----------C-----cccchhhHHHHHHHhCCCCceEeecccc--C----HHHHHHHHHhCCC
Confidence 3445588887775420 1 1233555567777665 5 888887322 2 2346678899999
Q ss_pred EEEeccCccc----cc-CCCCCccCHHHHHHHHhhC---------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 255 LLAVHGRTRD----EK-DGKKFRADWNAIKAVKNAL---------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 255 ~I~VHgRt~~----~~-~~~~g~ad~~~i~~ik~~~---------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
.|.| |.... .+ ...-|.+....+.++.+.. ++|||+.|||.+..|+.++|.. |||+||+|+.++
T Consensus 308 ~I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlal-GA~~V~iG~~~~ 385 (503)
T 1me8_A 308 FIKI-GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAM-GADFIMLGRYFA 385 (503)
T ss_dssp EEEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHT-TCSEEEESHHHH
T ss_pred eEEe-cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHc-CCCEEEECchhh
Confidence 9988 43221 01 0111234566666665442 6999999999999999999997 999999999987
Q ss_pred hC
Q 013813 321 EN 322 (436)
Q Consensus 321 ~n 322 (436)
.-
T Consensus 386 ~~ 387 (503)
T 1me8_A 386 RF 387 (503)
T ss_dssp TB
T ss_pred cc
Confidence 54
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-05 Score=74.18 Aligned_cols=146 Identities=16% Similarity=0.284 Sum_probs=90.7
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCcEEEEec--CC-CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 160 LFVQFCANDPEILLNAARRVE-PYCDYVDINL--GC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~--GC-P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+...|...|+..+.++++.+. .|+|.|.+-. |. +. .+-..+ ++++++++.++.|+.+-+=+.
T Consensus 6 ~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~----------~~~~g~----~~i~~i~~~~~~~~~v~l~v~ 71 (220)
T 2fli_A 6 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVP----------NISFGA----DVVASMRKHSKLVFDCHLMVV 71 (220)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS----------CBCBCH----HHHHHHHTTCCSEEEEEEESS
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC----------ccccCH----HHHHHHHHhCCCCEEEEEeec
Confidence 567788889988999887765 5788866653 32 11 111113 445556665566665543221
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcc--------------------------cc----------------c-CCCCCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTR--------------------------DE----------------K-DGKKFR 272 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~--------------------------~~----------------~-~~~~g~ 272 (436)
+.++ +++.+.++|+|.|++|+-.. .+ . .++.|.
T Consensus 72 -d~~~---~i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~ 147 (220)
T 2fli_A 72 -DPER---YVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ 147 (220)
T ss_dssp -SGGG---GHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC
T ss_pred -CHHH---HHHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCccc
Confidence 2122 34666677888887764211 00 0 011121
Q ss_pred -cCH---HHHHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 273 -ADW---NAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 273 -ad~---~~i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
..| +.++.+++.. ++||++.|||+ ++++.++++. |+|+|.+||+++..++.
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~-Gad~vvvGsai~~~~d~ 207 (220)
T 2fli_A 148 AFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEA-GANVFVAGSYLFKASDL 207 (220)
T ss_dssp CCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHH-TCCEEEESHHHHTSSCH
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHc-CCCEEEEChHHhCCCCH
Confidence 233 4456666554 79999999999 7999887775 99999999999887663
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-05 Score=80.18 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=99.7
Q ss_pred CEEEEecC-CCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 159 PLFVQFCA-NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 159 plivQL~g-~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
|+...++. .+++++.+.++ .++.|++.|.++.| | +...++++++++.+ ++++.+....+
T Consensus 138 ~~~~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~-~-----------------~~d~~~v~avr~a~~~~~l~vDan~~ 199 (375)
T 1r0m_A 138 EVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK-P-----------------GWDVQPVRATREAFPDIRLTVDANSA 199 (375)
T ss_dssp EBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T-----------------TBSHHHHHHHHHHCTTSCEEEECTTC
T ss_pred eeeEEecCCCCHHHHHHHHHHHHHhcccEEEEecC-h-----------------HHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 33334433 48998888775 55779999999863 1 22234456666554 67899998888
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.++ +++++.+++.|+++|- ++ . .+.||+..+++++.+++||.+.+.+.+.++++++++...+|.|++
T Consensus 200 ~~~~~-~~~~~~l~~~~i~~iE------qP---~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 268 (375)
T 1r0m_A 200 YTLAD-AGRLRQLDEYDLTYIE------QP---L-AWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINL 268 (375)
T ss_dssp CCGGG-HHHHHTTGGGCCSCEE------CC---S-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEE
T ss_pred CCHHH-HHHHHHHHhCCCcEEE------CC---C-CcccHHHHHHHHHhCCCCEEecCccCCHHHHHHHHHhCCCCEEEE
Confidence 99899 9999999999999884 21 1 145789999999999999999999999999999999878999987
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.2e-05 Score=69.74 Aligned_cols=140 Identities=17% Similarity=0.247 Sum_probs=88.7
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 157 DRPLFVQFCAND-PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 157 e~plivQL~g~d-~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+.|+++-+...| ++.+++.+ ++.|+|+|-+|.+.. .+.+.++++.+++. +.++.+-+- .
T Consensus 53 ~~~i~~~l~~~di~~~~~~~a--~~~Gad~v~vh~~~~----------------~~~~~~~~~~~~~~-g~~~gv~~~-s 112 (207)
T 3ajx_A 53 DKIVFADMKTMDAGELEADIA--FKAGADLVTVLGSAD----------------DSTIAGAVKAAQAH-NKGVVVDLI-G 112 (207)
T ss_dssp TSEEEEEEEECSCHHHHHHHH--HHTTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEECT-T
T ss_pred CCeEEEEEEecCccHHHHHHH--HhCCCCEEEEeccCC----------------hHHHHHHHHHHHHc-CCceEEEEe-c
Confidence 678998888888 88766443 456999999996432 23344555555432 455433321 1
Q ss_pred CChhhHHHHHHHHHHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
. .+..+.++.+.+.|+|++.++ +.+.. ..+. .... +.++++++. ++||++.|||+ ++.+.++++. |||+|.
T Consensus 113 ~--~~p~~~~~~~~~~g~d~v~~~~~~~~~-~~g~-~~~~-~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~~a-Gad~vv 184 (207)
T 3ajx_A 113 I--EDKATRAQEVRALGAKFVEMHAGLDEQ-AKPG-FDLN-GLLAAGEKA-RVPFSVAGGVK-VATIPAVQKA-GAEVAV 184 (207)
T ss_dssp C--SSHHHHHHHHHHTTCSEEEEECCHHHH-TSTT-CCTH-HHHHHHHHH-TSCEEEESSCC-GGGHHHHHHT-TCSEEE
T ss_pred C--CChHHHHHHHHHhCCCEEEEEeccccc-ccCC-CchH-HHHHHhhCC-CCCEEEECCcC-HHHHHHHHHc-CCCEEE
Confidence 2 122223455567799999444 44321 1111 1122 445555443 79999999998 7888888876 999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+||+++..++
T Consensus 185 vGsaI~~~~d 194 (207)
T 3ajx_A 185 AGGAIYGAAD 194 (207)
T ss_dssp ESHHHHTSSS
T ss_pred EeeeccCCCC
Confidence 9999988665
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-05 Score=73.07 Aligned_cols=140 Identities=11% Similarity=0.178 Sum_probs=90.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecC--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.|+.+-++-++++.+.+.+ .+.|+|+|-++.. .+ +...++++.+++. ++.+.+=+..
T Consensus 68 ~~~~~v~l~vnd~~~~v~~~--~~~Gad~v~vh~~~~~~-----------------~~~~~~~~~~~~~-g~~ig~~~~p 127 (230)
T 1rpx_A 68 DLPLDVHLMIVEPDQRVPDF--IKAGADIVSVHCEQSST-----------------IHLHRTINQIKSL-GAKAGVVLNP 127 (230)
T ss_dssp CSCEEEEEESSSHHHHHHHH--HHTTCSEEEEECSTTTC-----------------SCHHHHHHHHHHT-TSEEEEEECT
T ss_pred CCcEEEEEEecCHHHHHHHH--HHcCCCEEEEEecCccc-----------------hhHHHHHHHHHHc-CCcEEEEeCC
Confidence 57899999999988766665 4579999999843 11 1134555665543 5555555544
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCc---ccccCCCCCccCHHHHHHHHhhC-----CCcEEEccCCCCHHHHHHHHH
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRT---RDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt---~~~~~~~~g~ad~~~i~~ik~~~-----~iPVianGGI~s~eda~~~l~ 306 (436)
+...+.. +.+ ..++|+|.+-+.. ..+. + .+..++.++++++.. ++||++.|||+ ++.+.++++
T Consensus 128 ~t~~e~~----~~~-~~~~d~vl~~~~~pg~~g~~--~-~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~ 198 (230)
T 1rpx_A 128 GTPLTAI----EYV-LDAVDLVLIMSVNPGFGGQS--F-IESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIE 198 (230)
T ss_dssp TCCGGGG----TTT-TTTCSEEEEESSCTTCSSCC--C-CTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHH
T ss_pred CCCHHHH----HHH-HhhCCEEEEEEEcCCCCCcc--c-cHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHH
Confidence 4332222 111 3579998443332 1111 1 112235566677655 79999999999 788988887
Q ss_pred hcCcceeeeehHHhhCCccc
Q 013813 307 ETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf 326 (436)
. |+|+|.+|+++...++.-
T Consensus 199 a-Gad~vvvgSaI~~a~dp~ 217 (230)
T 1rpx_A 199 A-GANALVAGSAVFGAPDYA 217 (230)
T ss_dssp H-TCCEEEESHHHHTSSCHH
T ss_pred c-CCCEEEEChhhhCCCCHH
Confidence 5 999999999998876643
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.6e-05 Score=74.29 Aligned_cols=130 Identities=17% Similarity=0.095 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc---CccEEEEeccC-CChhhHHHHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKIRVF-PNLQDTIKYAKM 247 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~---~iPVsVKiRlg-~~~~d~~~~ak~ 247 (436)
..++-..++.|+|+||+.+ ++|+... .+.+-+.++++.+ ++|+-|=+-.+ .+.++....++.
T Consensus 91 ~~e~~~Av~~GAdEID~vi----------nig~~~~----~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ri 156 (234)
T 1n7k_A 91 LVEAQTVLEAGATELDVVP----------HLSLGPE----AVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDS 156 (234)
T ss_dssp HHHHHHHHHHTCCEEEECC----------CGGGCHH----HHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEec----------cchHHHH----HHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHH
Confidence 3444456788999999864 1343322 4444445555544 35653332222 245667778888
Q ss_pred HHHcCccEEEeccCcccccCCCCCccCHHHHHH--HHhhCCCcEEEccCCCCHHHHHHHHHhcCcc--eeeeehHHhh
Q 013813 248 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA--VKNALRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLE 321 (436)
Q Consensus 248 le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~--ik~~~~iPVianGGI~s~eda~~~l~~tGaD--gVmIGRgal~ 321 (436)
+.++|+|+|-..- +..+ .+.+..+.++. +++.+++||.+.|||++.+++.++++. |++ |+..|+.++.
T Consensus 157 a~eaGADfVKTsT----G~~~-~~gAt~~dv~l~~m~~~v~v~VKaaGGirt~~~al~~i~a-Ga~RiG~S~g~~I~~ 228 (234)
T 1n7k_A 157 SRRAGADIVKTST----GVYT-KGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGA-GADIIGTSSAVKVLE 228 (234)
T ss_dssp HHHTTCSEEESCC----SSSC-CCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHT-TCSEEEETTHHHHHH
T ss_pred HHHhCCCEEEeCC----CCCC-CCCCCHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHHc-CccccchHHHHHHHH
Confidence 9999999994321 1110 03456666667 777777999999999999999999986 999 7777776654
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.5e-05 Score=78.66 Aligned_cols=129 Identities=11% Similarity=0.105 Sum_probs=99.8
Q ss_pred CEEEEecC-CCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 159 PLFVQFCA-NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 159 plivQL~g-~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
|+...++. .+++++.+.|+ .++.|++.|.++.| | +...+.++++++.+ ++++.+...-+
T Consensus 131 ~~~~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~-~-----------------~~d~~~v~avr~a~~~~~l~vDan~~ 192 (369)
T 2zc8_A 131 EVGVSLGIQPSVEDTLRVVERHLEEGYRRIKLKIK-P-----------------GWDYEVLKAVREAFPEATLTADANSA 192 (369)
T ss_dssp EBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T-----------------TBSHHHHHHHHHHCTTSCEEEECTTC
T ss_pred eceEEecCCCCHHHHHHHHHHHHHhhhheeeeecC-h-----------------hHHHHHHHHHHHHcCCCeEEEecCCC
Confidence 33344443 48888888775 45779999999863 1 22234456666554 67899998888
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.++ +++++.+++.|+.+|. ++ . .+.||+..+++++.+++||.+.+.+.+.++++++++...+|.|++
T Consensus 193 ~~~~~-~~~~~~l~~~~i~~iE------qP---~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 261 (369)
T 2zc8_A 193 YSLAN-LAQLKRLDELRLDYIE------QP---L-AYDDLLDHAKLQRELSTPICLDESLTGAEKARKAIELGAGRVFNV 261 (369)
T ss_dssp CCGGG-HHHHHGGGGGCCSCEE------CC---S-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCHHH-HHHHHHHHhCCCcEEE------CC---C-CcccHHHHHHHHhhCCCCEEEcCccCCHHHHHHHHHhCCCCEEEE
Confidence 99899 9999999999999885 21 1 135788899999999999999999999999999999877999987
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
=
T Consensus 262 k 262 (369)
T 2zc8_A 262 K 262 (369)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.1e-05 Score=74.59 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=97.7
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHcC--CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 157 DRPLFVQFCA-NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g-~d~e~~~~AA~~v~~--g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
+.++..+-.| .+.++...++++..+ |-+.|.|-.- .+. -.++-|+....+-.+.+.+. ++.|...+
T Consensus 63 ~~~~lpntaG~~taeeAv~~a~lare~~gt~~iKlEvi-------~d~--~~l~pD~~~tv~aa~~L~k~-Gf~Vlpy~- 131 (268)
T 2htm_A 63 GVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVI-------PDP--TYLLPDPLETLKAAERLIEE-DFLVLPYM- 131 (268)
T ss_dssp TSEEEEBCTTCCSHHHHHHHHHHHHHHHCCSEEBCCCC-------SCT--TTTCCCHHHHHHHHHHHHHT-TCEECCEE-
T ss_pred hhhccCcccCCCCHHHHHHHHHhhhHhcCcceeeeeec-------cCc--cccCcCHHHHHHHHHHHHHC-CCEEeecc-
Confidence 5667777666 678999999987654 4566555421 111 12666766665555555332 32222111
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh-hCC-CcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALR-IPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~-~~~-iPVianGGI~s~eda~~~l~~tGaD 311 (436)
. ++ ..+++.+++.|++.|.--+..... +.|-.+.+.++.+++ ..+ +|||..|||.+++|+..+++. |||
T Consensus 132 -~---~D-~~~ak~l~~~G~~aVmPlg~pIGs---G~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeL-GAd 202 (268)
T 2htm_A 132 -G---PD-LVLAKRLAALGTATVMPLAAPIGS---GWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMEL-GLD 202 (268)
T ss_dssp -C---SC-HHHHHHHHHHTCSCBEEBSSSTTT---CCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHT-TCC
T ss_pred -C---CC-HHHHHHHHhcCCCEEEecCccCcC---CcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHc-CCC
Confidence 1 22 267899999999998544432221 222346778999998 678 999999999999999999997 999
Q ss_pred eeeeehHHhh
Q 013813 312 GVLSAESLLE 321 (436)
Q Consensus 312 gVmIGRgal~ 321 (436)
||++|+++..
T Consensus 203 gVlVgSAI~~ 212 (268)
T 2htm_A 203 AVLVNTAIAE 212 (268)
T ss_dssp EEEESHHHHT
T ss_pred EEEEChHHhC
Confidence 9999999864
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.7e-05 Score=78.38 Aligned_cols=125 Identities=13% Similarity=0.011 Sum_probs=100.2
Q ss_pred HHHHHH-HHHcCCCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCC-ChhhHHHHH
Q 013813 171 ILLNAA-RRVEPYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFP-NLQDTIKYA 245 (436)
Q Consensus 171 ~~~~AA-~~v~~g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~-~~~d~~~~a 245 (436)
++++.+ +.++.||..|-|+ .|-+ ..+++.-.+++++|++.+ ++++.|...-++ +.+++++++
T Consensus 155 ~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~ 221 (394)
T 3mqt_A 155 AYKPLIAKAKERGAKAVKVCIIPND-------------KVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTF 221 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCT-------------TSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEecccCCC-------------ccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHH
Confidence 455455 4567799999995 3311 135677788899999887 589999988899 899999999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+.+++.|+++|. +... +.|++..+++++.+++||++.+.+.+.++++++++...+|.|++--+
T Consensus 222 ~~L~~~~i~~iE-------eP~~---~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~ 284 (394)
T 3mqt_A 222 RQLEDIDLYFIE-------ACLQ---HDDLIGHQKLAAAINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYN 284 (394)
T ss_dssp HHTGGGCCSEEE-------SCSC---TTCHHHHHHHHHHSSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTT
T ss_pred HHHhhcCCeEEE-------CCCC---cccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCcc
Confidence 999999999883 2111 34788999999999999999999999999999999888999987533
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=98.08 E-value=5.6e-05 Score=77.07 Aligned_cols=134 Identities=14% Similarity=0.081 Sum_probs=105.6
Q ss_pred CHHHHHHHH-HHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAA-RRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA-~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
++++.++.+ +.. +.||..|-+..|++.. ......++...+.++++++.+ ++++.|....+++.+++++
T Consensus 146 ~~~~~~~~~~~~~~~~Gf~~~K~KvG~~~~--------~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~ 217 (388)
T 3tcs_A 146 TPRDEAERLKRLRDTQGFTAFKVRAGAEVG--------RNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIE 217 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECSCTTC--------TTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEccCCCcc--------cccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHH
Confidence 566555444 443 5699999999987641 222234667778899999887 5899999999999999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
+++.+++.|+.+|- +... +-|++..+++++.+++||.+...+.+..++.++++...+|.|++--+-
T Consensus 218 ~~~~l~~~~i~~iE-------eP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~ 283 (388)
T 3tcs_A 218 VGHMLQDHGFCHFE-------EPCP---YWELAQTKQVTDALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILY 283 (388)
T ss_dssp HHHHHHHTTCCEEE-------CCSC---TTCHHHHHHHHHHCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHHH
T ss_pred HHHHHhhcCCeEEE-------CCCC---ccCHHHHHHHHHhcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCccc
Confidence 99999999998872 2111 347899999999999999999999999999999998789999866433
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=98.06 E-value=5e-05 Score=77.47 Aligned_cols=134 Identities=11% Similarity=0.157 Sum_probs=108.8
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc---CccEEEEec
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~---~iPVsVKiR 233 (436)
.|+...+...+++++++.++ .++.|+..|.+.+|++ +++.-.+.++++++.+ ++++.|...
T Consensus 154 v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~KlKvg~~---------------~~~~d~~~v~avR~a~gg~~~~L~vDaN 218 (391)
T 4e8g_A 154 VPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGR---------------PVEIDIETVRKVWERIRGTGTRLAVDGN 218 (391)
T ss_dssp EECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTTTCEEEEECT
T ss_pred EEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEcCCCC---------------CHHHHHHHHHHHHHHhCCCCCeEEEeCC
Confidence 45556778889999988775 5677999999998863 2455566777777664 478999988
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
.+|+.+++..+++.+++.++ +| ++. ..+|+..+++++.+++||.+...+.+..++.++++...+|.|
T Consensus 219 ~~w~~~~A~~~~~~L~~~~i-~i-------EeP-----~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v 285 (391)
T 4e8g_A 219 RSLPSRDALRLSRECPEIPF-VL-------EQP-----CNTLEEIAAIRGRVQHGIYLDESGEDLSTVIRAAGQGLCDGF 285 (391)
T ss_dssp TCCCHHHHHHHHHHCTTSCE-EE-------ESC-----SSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCe-EE-------ecC-----CccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence 89999999999999999988 76 221 247899999999999999999999999999999998789999
Q ss_pred eeehHH
Q 013813 314 LSAESL 319 (436)
Q Consensus 314 mIGRga 319 (436)
++--+-
T Consensus 286 ~ik~~~ 291 (391)
T 4e8g_A 286 GMKLTR 291 (391)
T ss_dssp EEEHHH
T ss_pred EeCccc
Confidence 886443
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=6e-05 Score=77.25 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=105.2
Q ss_pred CCHHHHHHHHH-HHcCCCcEEEEecCCCchhhh---cCccc----ccccC---ChHHHHHHHHHHhccc--CccEEEEec
Q 013813 167 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIAR---RGNYG----AFLMD---NLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 167 ~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~---~~~~G----s~Ll~---~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
.+++++++.++ .++.||..|-|..+.+..... +.+.| ...-. ..+...+++++|++.+ ++++.|+..
T Consensus 142 ~~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN 221 (409)
T 3go2_A 142 TDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLN 221 (409)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 37888888875 457799999998732211000 00111 01111 1356678899999887 689999988
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.++++++++.+++.|+++|..- ..|++..+++++.+++||++.+.+.+.++++++++...+|.|
T Consensus 222 ~~~~~~~A~~~~~~L~~~~i~~iE~P------------~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v 289 (409)
T 3go2_A 222 FNAKPEGYLKILRELADFDLFWVEID------------SYSPQGLAYVRNHSPHPISSCETLFGIREFKPFFDANAVDVA 289 (409)
T ss_dssp TCSCHHHHHHHHHHTTTSCCSEEECC------------CSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCCeEEEeC------------cCCHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEE
Confidence 89999999999999999999998621 137888999999999999999999999999999998789999
Q ss_pred eee
Q 013813 314 LSA 316 (436)
Q Consensus 314 mIG 316 (436)
++-
T Consensus 290 ~~k 292 (409)
T 3go2_A 290 IVD 292 (409)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.03 E-value=7e-06 Score=76.67 Aligned_cols=145 Identities=15% Similarity=0.111 Sum_probs=98.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhh---------hcCcccccccCChHHHHHHH---------
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIA---------RRGNYGAFLMDNLPLVKSLV--------- 217 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~---------~~~~~Gs~Ll~~p~~v~eIv--------- 217 (436)
+.|++.-+-+.+++++.+.++.+ +.|++.|++++-||.... ..-++|. ++ +.+.+...+
T Consensus 12 ~~~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~~~~~~gag~-vl-~~d~~~~A~~~GAd~v~~ 89 (207)
T 2yw3_A 12 ESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGT-VR-SPKEAEAALEAGAAFLVS 89 (207)
T ss_dssp HHCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTTSSCEEEEES-CC-SHHHHHHHHHHTCSEEEE
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhCCCCEEEeCe-Ee-eHHHHHHHHHcCCCEEEc
Confidence 36799999999999888888655 568999999998886421 1122344 22 334443333
Q ss_pred --------HHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCc
Q 013813 218 --------EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 218 --------~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iP 288 (436)
+..+. .++|+...+. +.. + +..+.+.|+|+|.+++- ...+ -.++++.++... ++|
T Consensus 90 ~~~d~~v~~~~~~-~g~~~i~G~~---t~~---e-~~~A~~~Gad~v~~fpa---~~~g-----G~~~lk~l~~~~~~ip 153 (207)
T 2yw3_A 90 PGLLEEVAALAQA-RGVPYLPGVL---TPT---E-VERALALGLSALKFFPA---EPFQ-----GVRVLRAYAEVFPEVR 153 (207)
T ss_dssp SSCCHHHHHHHHH-HTCCEEEEEC---SHH---H-HHHHHHTTCCEEEETTT---TTTT-----HHHHHHHHHHHCTTCE
T ss_pred CCCCHHHHHHHHH-hCCCEEecCC---CHH---H-HHHHHHCCCCEEEEecC---cccc-----CHHHHHHHHhhCCCCc
Confidence 32222 3455554421 222 2 34456789999999751 1110 247788998877 899
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
|++.|||+ .+++.++++. |+++|.+|++++.
T Consensus 154 vvaiGGI~-~~n~~~~l~a-Ga~~vavgSai~~ 184 (207)
T 2yw3_A 154 FLPTGGIK-EEHLPHYAAL-PNLLAVGGSWLLQ 184 (207)
T ss_dssp EEEBSSCC-GGGHHHHHTC-SSBSCEEESGGGS
T ss_pred EEEeCCCC-HHHHHHHHhC-CCcEEEEehhhhC
Confidence 99999997 6999999985 9999999998876
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00011 Score=74.50 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=107.0
Q ss_pred CCEEEEecCCCHHHHH-HHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 158 RPLFVQFCANDPEILL-NAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~~~-~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
.|+...+...+++++. ++++.++ .|+..|-+..|+. +++.-.+.++++++.+ ++++.|...
T Consensus 137 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDaN 201 (381)
T 3fcp_A 137 LPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGAR---------------ELATDLRHTRAIVEALGDRASIRVDVN 201 (381)
T ss_dssp EEBCEEECSSCHHHHHHHHHHHTC----CEEEEECCSS---------------CHHHHHHHHHHHHHHTCTTCEEEEECT
T ss_pred eeeEEEecCCChHHHHHHHHHHHHhCCCCEEEEecCCC---------------ChHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 3444556566776654 4556666 4899999998752 3455677788888887 478999988
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
.+++.+++.++++.+++.|+.+| ++.. .+.||+..+++++.+++||.+...+.+..++.++++..++|.|
T Consensus 202 ~~~~~~~A~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v 271 (381)
T 3fcp_A 202 QAWDAATGAKGCRELAAMGVDLI-------EQPV---SAHDNAALVRLSQQIETAILADEAVATAYDGYQLAQQGFTGAY 271 (381)
T ss_dssp TCBCHHHHHHHHHHHHHTTCSEE-------ECCB---CTTCHHHHHHHHHHSSSEEEESTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCccce-------eCCC---CcccHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEE
Confidence 89999999999999999999887 2211 1357999999999999999999999999999999998889999
Q ss_pred eeehHHhhC
Q 013813 314 LSAESLLEN 322 (436)
Q Consensus 314 mIGRgal~n 322 (436)
++--+-.+.
T Consensus 272 ~~k~~~~GG 280 (381)
T 3fcp_A 272 ALKIAKAGG 280 (381)
T ss_dssp EECHHHHTS
T ss_pred EecccccCC
Confidence 986554443
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=98.02 E-value=7.7e-05 Score=75.75 Aligned_cols=137 Identities=12% Similarity=0.165 Sum_probs=106.6
Q ss_pred CCEEEEecCCCHHH-HHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 158 RPLFVQFCANDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~-~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
.|+...+...++++ +.++++.++ .||..|-|..|+. +++.-.+.++++++.+ ++++.|...
T Consensus 138 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDaN 202 (382)
T 3dgb_A 138 LPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAG---------------EVDRDLAHVIAIKKALGDSASVRVDVN 202 (382)
T ss_dssp EEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECCSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred eeEEEEecCCChHHHHHHHHHHHHhCCCCEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 34444555556665 455556676 5899999998652 2455567788888876 478999988
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
.+++.+++.++++.+++.|+.+|- +. . .+.||+..+++++.+++||.+...+.+.+++.++++...+|.|
T Consensus 203 ~~~~~~~A~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v 272 (382)
T 3dgb_A 203 QAWDEAVALRACRILGGNGIDLIE-------QP--I-SRNNRAGMVRLNASSPAPIMADESIECVEDAFNLAREGAASVF 272 (382)
T ss_dssp TCBCHHHHHHHHHHHHTTTCCCEE-------CC--B-CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCcCeee-------CC--C-CccCHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 899999999999999999998873 21 1 1357999999999999999999999999999999998889999
Q ss_pred eeehHH
Q 013813 314 LSAESL 319 (436)
Q Consensus 314 mIGRga 319 (436)
++--+-
T Consensus 273 ~~k~~~ 278 (382)
T 3dgb_A 273 ALKIAK 278 (382)
T ss_dssp EECHHH
T ss_pred Eecccc
Confidence 876443
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=8.3e-06 Score=75.25 Aligned_cols=76 Identities=17% Similarity=0.346 Sum_probs=59.5
Q ss_pred HHHHHcCccEEEeccCccc-ccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 246 KMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~-~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
..+.+.|+|+|.+++.... ...+ ....+|+.++++++..++||++.|||+ ++++.++++ .|+|+|++|++++..|+
T Consensus 122 ~~~~~~g~d~i~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~-~Ga~gv~vgs~i~~~~d 198 (215)
T 1xi3_A 122 LEAEKKGADYLGAGSVFPTKTKED-ARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLK-TGVDGIAVISAVMGAED 198 (215)
T ss_dssp HHHHHHTCSEEEEECSSCC----C-CCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHT-TTCSEEEESHHHHTSSS
T ss_pred HHHHhcCCCEEEEcCCccCCCCCC-CCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHH-cCCCEEEEhHHHhCCCC
Confidence 4466789999998653221 1111 125679999999988899999999999 999999887 59999999999998764
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.5e-05 Score=77.98 Aligned_cols=135 Identities=9% Similarity=0.034 Sum_probs=104.4
Q ss_pred CCEEEEec-CCC--HHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEE
Q 013813 158 RPLFVQFC-AND--PEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 231 (436)
Q Consensus 158 ~plivQL~-g~d--~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVK 231 (436)
.|+...+. +.+ ++++++.++ .++.|+..|.|+++ | ..+ .+.+++|++.+ ++++.|.
T Consensus 150 v~~~~s~g~~~~~~~e~~~~~a~~~~~~G~~~iKlKv~-~-------------~~d----~~~v~avR~a~G~~~~L~vD 211 (400)
T 3mwc_A 150 IESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIK-P-------------GWD----VEPLQETRRAVGDHFPLWTD 211 (400)
T ss_dssp EEBCEEECCCTTCCHHHHHHHHHHHHHHTCSCEEEECB-T-------------TBS----HHHHHHHHHHHCTTSCEEEE
T ss_pred EEeeEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEEeC-c-------------chH----HHHHHHHHHhcCCCCEEEEe
Confidence 34555554 335 899888775 45679999999973 1 123 45566666665 5789999
Q ss_pred eccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 232 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 232 iRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
...+++.++ +++++.+++.|+.+|- +. . .+.|++..+++++.+++||.+...+.+.+++.++++...+|
T Consensus 212 aN~~w~~~~-~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d 280 (400)
T 3mwc_A 212 ANSSFELDQ-WETFKAMDAAKCLFHE-------QP--L-HYEALLDLKELGERIETPICLDESLISSRVAEFVAKLGISN 280 (400)
T ss_dssp CTTCCCGGG-HHHHHHHGGGCCSCEE-------SC--S-CTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCCHHH-HHHHHHHHhcCCCEEe-------CC--C-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCC
Confidence 988999888 8999999999998873 21 1 13478999999999999999999999999999999988899
Q ss_pred eeeeehHHhh
Q 013813 312 GVLSAESLLE 321 (436)
Q Consensus 312 gVmIGRgal~ 321 (436)
.|++--+-.+
T Consensus 281 ~v~~k~~~~G 290 (400)
T 3mwc_A 281 IWNIKIQRVG 290 (400)
T ss_dssp EEEECHHHHT
T ss_pred EEEEcchhhC
Confidence 9988654443
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=97.96 E-value=7.6e-05 Score=76.14 Aligned_cols=123 Identities=7% Similarity=-0.084 Sum_probs=99.1
Q ss_pred HHHHHH-HHHcCCCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCC-ChhhHHHHH
Q 013813 171 ILLNAA-RRVEPYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFP-NLQDTIKYA 245 (436)
Q Consensus 171 ~~~~AA-~~v~~g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~-~~~d~~~~a 245 (436)
++++.+ +.++.||..|-|+ .|.+ ..+++.-.+++++|++.+ ++++.|...-++ +.+++++++
T Consensus 160 ~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~ 226 (394)
T 3mkc_A 160 GYAPLLEKAKAHNIRAVKVCVPIKA-------------DWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLL 226 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTC-------------CCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCccCCC-------------ccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHH
Confidence 455455 4567799999994 3311 135677788899999887 589999988899 899999999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+.+++.|+++|. +.. .+.|++..+++++.+++||++.+.+.+.++++++++...+|.|++-
T Consensus 227 ~~L~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 287 (394)
T 3mkc_A 227 NSIEDLELYFAE-------ATL---QHDDLSGHAKLVENTRSRICGAEMSTTRFEAEEWITKGKVHLLQSD 287 (394)
T ss_dssp HHTGGGCCSEEE-------SCS---CTTCHHHHHHHHHHCSSCBEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred HHhhhcCCeEEE-------CCC---CchhHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecC
Confidence 999999999883 111 1347889999999999999999999999999999998789999864
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00013 Score=70.14 Aligned_cols=144 Identities=13% Similarity=0.165 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------------
Q 013813 167 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------ 234 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------------ 234 (436)
.||.+++ +..+.|+++|-+-.- ...|||++ +-+..+++.+++||-.|==+
T Consensus 64 ~dp~~iA---~~~~~GA~aiSVLTd-------~~~F~Gs~--------~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~ 125 (258)
T 4a29_A 64 RDPIEYA---KFMERYAVGLSITTE-------EKYFNGSY--------ETLRKIASSVSIPILMSDFIVKESQIDDAYNL 125 (258)
T ss_dssp CCHHHHH---HHHTTTCSEEEEECC-------STTTCCCH--------HHHHHHHTTCSSCEEEESCCCSHHHHHHHHHH
T ss_pred CCHHHHH---HHHhCCCeEEEEeCC-------CCCCCCCH--------HHHHHHHHhcCCCEeeccccccHHHHHHHHHc
Confidence 3665544 455678898877632 22355554 23566788889999888210
Q ss_pred C----------CChhhHHHHHHHHHHcCccEE-EeccCcc--------------cccCCCCCccCHHHHHHHHhhC--CC
Q 013813 235 F----------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RI 287 (436)
Q Consensus 235 g----------~~~~d~~~~ak~le~aG~d~I-~VHgRt~--------------~~~~~~~g~ad~~~i~~ik~~~--~i 287 (436)
| .+.++..++.+.+.+.|.+.+ -||...- ..+.-.+...|++...++.+.+ ++
T Consensus 126 GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~ 205 (258)
T 4a29_A 126 GADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGIMSRDFETGEINKENQRKLISMIPSNV 205 (258)
T ss_dssp TCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTS
T ss_pred CCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeCCCccccccCHHHHHHHHhhCCCCC
Confidence 1 111233344444444444333 2332110 0011122357888888888875 68
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.+|+-+||.|++|+.++.+. |+|+|.||.+++.+|+-.+++
T Consensus 206 ~~VsESGI~t~~dv~~l~~~-G~~a~LVGealmr~~d~~~~L 246 (258)
T 4a29_A 206 VKVAKLGISERNEIEELRKL-GVNAFLISSSLMRNPEKIKEL 246 (258)
T ss_dssp EEEEEESSCCHHHHHHHHHT-TCCEEEECHHHHHCTTHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHC-CCCEEEECHHHhCCCcHHHHH
Confidence 89999999999999998875 999999999999999854443
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.9e-05 Score=79.03 Aligned_cols=125 Identities=10% Similarity=-0.023 Sum_probs=98.9
Q ss_pred HHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccc--cCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 170 EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFL--MDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 170 e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~L--l~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++.++|+ .++.||+.|.++.|-. |+ .+ .++.+...++++++++.+ ++++.+...-+++.++++++
T Consensus 150 e~~~~~a~~~~~~Gf~~vKik~g~~--------~~-~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~ 220 (392)
T 3p3b_A 150 ALMQEEAMQGYAKGQRHFKIKVGRG--------GR-HMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEV 220 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCHH--------HH-TSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEECcCcC--------cc-cCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 88877775 4577999999987621 11 11 124567778888988876 58888888778999999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++.|+++|- + ... .|++..+++++. +++||++.+ +.+.++++++++...+|.|++
T Consensus 221 ~~~l~~~~i~~iE-------~--P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~i 284 (392)
T 3p3b_A 221 LAALSDVNLYWLE-------E--AFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQY 284 (392)
T ss_dssp HHHTTTSCEEEEE-------C--SSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECC
T ss_pred HHHHHhcCCCEEe-------c--CCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEe
Confidence 9999999988763 1 121 478889999998 899999999 999999999999877999876
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=73.08 Aligned_cols=75 Identities=17% Similarity=0.353 Sum_probs=58.1
Q ss_pred HHHHHHcCccEEEec----cCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVH----GRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VH----gRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.+.|+|+|.+. ..+.. +...+.+|+.++++++.++ +||++.|||. ++++.++++ .|+|+|.+|+++
T Consensus 129 ~~~a~~~g~d~v~~~~v~~t~~~~---~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~-~Ga~gv~vgs~i 203 (227)
T 2tps_A 129 VKQAEEDGADYVGLGPIYPTETKK---DTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQ-AGADGVSMISAI 203 (227)
T ss_dssp HHHHHHHTCSEEEECCSSCCCSSS---SCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHH-TTCSEEEESHHH
T ss_pred HHHHHhCCCCEEEECCCcCCCCCC---CCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHH-cCCCEEEEhHHh
Confidence 455668899999862 22221 1112467999999998887 9999999999 999999887 499999999999
Q ss_pred hhCCc
Q 013813 320 LENPA 324 (436)
Q Consensus 320 l~nP~ 324 (436)
+..++
T Consensus 204 ~~~~d 208 (227)
T 2tps_A 204 SQAED 208 (227)
T ss_dssp HTSSC
T ss_pred hcCCC
Confidence 87544
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=97.94 E-value=6.9e-05 Score=71.02 Aligned_cols=146 Identities=18% Similarity=0.263 Sum_probs=98.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHc-CCCcE--EEEecC--CCchhhhcCcccccccCChHHHHHHHHHHhcc--cCccEEEE
Q 013813 159 PLFVQFCANDPEILLNAARRVE-PYCDY--VDINLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LNVPVSCK 231 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~-~g~D~--IdLN~G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~--~~iPVsVK 231 (436)
.+..+|...|...+.++.+.++ .|+|. +|+--| .|+- .+| + ++++++++. .++|+.|+
T Consensus 6 ~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~-----~~G------~----~~v~~ir~~~~~~~~~dvh 70 (228)
T 3ovp_A 6 KIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNI-----TFG------H----PVVESLRKQLGQDPFFDMH 70 (228)
T ss_dssp EEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCB-----CBC------H----HHHHHHHHHHCSSSCEEEE
T ss_pred EeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCccc-----ccC------H----HHHHHHHHhhCCCCcEEEE
Confidence 3668899999999999998775 47875 444433 2331 133 2 356666666 47888887
Q ss_pred eccCCChhhHHHHHHHHHHcCccEEEeccCccc--------------------------c-----------------cCC
Q 013813 232 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E-----------------KDG 268 (436)
Q Consensus 232 iRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~--------------------------~-----------------~~~ 268 (436)
+=.. +..++++.+.++|+|.|++|+-... . ..+
T Consensus 71 Lmv~----~p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pG 146 (228)
T 3ovp_A 71 MMVS----KPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPG 146 (228)
T ss_dssp EECS----CGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTT
T ss_pred EEeC----CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCC
Confidence 5442 2234566777899999999752110 0 011
Q ss_pred CCC----ccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 269 KKF----RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 269 ~~g----~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+.| +..++.++++++.. +++|.+.|||+ ++.+.++.+. |||.+++||++...++.
T Consensus 147 f~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t~~~~~~a-GAd~~VvGsaIf~a~dp 206 (228)
T 3ovp_A 147 FGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVG-PDTVHKCAEA-GANMIVSGSAIMRSEDP 206 (228)
T ss_dssp TCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCS-TTTHHHHHHH-TCCEEEESHHHHTCSCH
T ss_pred CCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcC-HHHHHHHHHc-CCCEEEEeHHHhCCCCH
Confidence 222 22456677787765 68999999995 7999999886 99999999998876654
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.3e-05 Score=75.19 Aligned_cols=146 Identities=13% Similarity=0.160 Sum_probs=100.5
Q ss_pred CEEEEecCCCHHHHHHHHHHHc-CCCcE--EEEecC--CCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEe
Q 013813 159 PLFVQFCANDPEILLNAARRVE-PYCDY--VDINLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 232 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~-~g~D~--IdLN~G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKi 232 (436)
.+..+|...|...+.++.+.++ .|+|. ||+--| .|+- .+| ..+++++++.+ ++|+.|.+
T Consensus 29 ~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpni-----t~G----------~~~v~~lr~~~p~~~ldvHL 93 (246)
T 3inp_A 29 QINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNL-----TFG----------PMVLKALRDYGITAGMDVHL 93 (246)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-----CCC----------HHHHHHHHHHTCCSCEEEEE
T ss_pred eeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcch-----hcC----------HHHHHHHHHhCCCCeEEEEE
Confidence 4779999999999999998876 47875 444433 2331 133 25677777777 78998886
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCccc--------------------------c-----------------cCCC
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E-----------------KDGK 269 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~--------------------------~-----------------~~~~ 269 (436)
-+ .++.++++.+.++|+|.|++|.-... . ..++
T Consensus 94 mv----~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGf 169 (246)
T 3inp_A 94 MV----KPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGF 169 (246)
T ss_dssp EC----SSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC
T ss_pred ee----CCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCC
Confidence 54 23345677888999999999752110 0 0111
Q ss_pred CC----ccCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 270 KF----RADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 270 ~g----~ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.| +..++.|+++++. .+++|.+-|||+ .+.+.++.+. |||.+++|+++...++.
T Consensus 170 gGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~a-GAD~~V~GSaIf~a~dp 232 (246)
T 3inp_A 170 GGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVC-GVNAFVAGSAIFNSDSY 232 (246)
T ss_dssp --CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTT-TCCEEEESHHHHTSSCH
T ss_pred CCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHc-CCCEEEEehHHhCCCCH
Confidence 12 2345667777664 358999999999 6889998876 99999999998876553
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.90 E-value=5.9e-05 Score=74.21 Aligned_cols=143 Identities=11% Similarity=0.197 Sum_probs=88.7
Q ss_pred CCCEEEEecCCCH--------HHHHHHHHHHcCCCcEEEEe--cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCc
Q 013813 157 DRPLFVQFCANDP--------EILLNAARRVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 157 e~plivQL~g~d~--------e~~~~AA~~v~~g~D~IdLN--~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i 226 (436)
+.|+|+.+-++.. ..+..+...++.|+|+|++. .|.+. +. ...+.+.++++++.+ .++
T Consensus 105 ~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i~~Gs~~-------~~----~~l~~i~~v~~~a~~-~Gl 172 (295)
T 3glc_A 105 NRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEY-------EH----QSIKNIIQLVDAGMK-VGM 172 (295)
T ss_dssp CCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEECTTSTT-------HH----HHHHHHHHHHHHHHT-TTC
T ss_pred CccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEEECCCCc-------HH----HHHHHHHHHHHHHHH-cCC
Confidence 5678888876541 11123344567899998876 33111 00 112334455555543 368
Q ss_pred cEEEEeccC----CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC-CHHH-
Q 013813 227 PVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-HMED- 300 (436)
Q Consensus 227 PVsVKiRlg----~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~-s~ed- 300 (436)
|+.+=.-.| .+.+.....++.+.++|+|+|-+.. + + +.++++.+...+||++.||+. +.++
T Consensus 173 pvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~-t--------~----e~~~~vv~~~~vPVv~~GG~~~~~~~~ 239 (295)
T 3glc_A 173 PTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYY-V--------E----KGFERIVAGCPVPIVIAGGKKLPEREA 239 (295)
T ss_dssp CEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEEC-C--------T----TTHHHHHHTCSSCEEEECCSCCCHHHH
T ss_pred EEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCC-C--------H----HHHHHHHHhCCCcEEEEECCCCCHHHH
Confidence 887733222 2322234578888999999986641 1 1 125677777889999999998 4444
Q ss_pred ---HHHHHHhcCcceeeeehHHhhCCcc
Q 013813 301 ---VQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 301 ---a~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+.++++. |++||.+||.++..|.-
T Consensus 240 l~~v~~ai~a-GA~Gv~vGRnI~q~~dp 266 (295)
T 3glc_A 240 LEMCWQAIDQ-GASGVDMGRNIFQSDHP 266 (295)
T ss_dssp HHHHHHHHHT-TCSEEEESHHHHTSSSH
T ss_pred HHHHHHHHHh-CCeEEEeHHHHhcCcCH
Confidence 4445565 99999999999987653
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00023 Score=67.45 Aligned_cols=125 Identities=12% Similarity=0.141 Sum_probs=86.2
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe--ccC-CChhhHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI--RVF-PNLQDTIKYAKM 247 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi--Rlg-~~~~d~~~~ak~ 247 (436)
...++.. ++.|+|.||+-+ ++|...-.+.+.+.+-+.++++.++- ..+|+ -.+ .+.++....++.
T Consensus 69 k~~E~~~-i~~GAdEID~Vi----------nig~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~i 136 (226)
T 1vcv_A 69 RIALVSR-LAEVADEIDVVA----------PIGLVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDI 136 (226)
T ss_dssp HHHHHHH-HTTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCCEEEEec----------chhhhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHH
Confidence 3455557 889999999875 25666667888888888888887742 24552 221 345677788899
Q ss_pred HHHcCccEEEec-cCcc---cccCCCCCccCHHHHHHHHhh---CC--CcEEEccCCCCHHHHHHHHHh
Q 013813 248 LEDAGCSLLAVH-GRTR---DEKDGKKFRADWNAIKAVKNA---LR--IPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 248 le~aG~d~I~VH-gRt~---~~~~~~~g~ad~~~i~~ik~~---~~--iPVianGGI~s~eda~~~l~~ 307 (436)
+.++|+|+|-.. |-.. ....+.++.+..+.++.+++. ++ ++|-++|||+|.+++.++++.
T Consensus 137 a~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a 205 (226)
T 1vcv_A 137 IAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp HHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred HHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHH
Confidence 999999999443 3220 000111234556666666655 54 999999999999999999985
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0002 Score=73.53 Aligned_cols=150 Identities=9% Similarity=0.084 Sum_probs=113.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhh-----cCcccccccC---ChHHHHHHHHHHhccc--
Q 013813 156 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIAR-----RGNYGAFLMD---NLPLVKSLVEKLALNL-- 224 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~-----~~~~Gs~Ll~---~p~~v~eIv~av~~~~-- 224 (436)
+..|+...+.+.+++++.+.++ .++.|+..+-+..|.+..... ...+...... +++...+.++++++.+
T Consensus 141 ~~v~~y~~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~ 220 (421)
T 4hnl_A 141 TAIPAYTHAVADNLDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGN 220 (421)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccceecccCCCCHHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCC
Confidence 3457777788889999888775 567799999999987542111 1112222222 3455667788888887
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHH
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~ 304 (436)
++.+.+...-+++.++++++++.+++.++.+| ++.. .+-|++..+++++.+++||.+.-.+.+..+++++
T Consensus 221 ~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~ 290 (421)
T 4hnl_A 221 QFQMLHDVHERLHPNQAIQFAKAAEPYQLFFL-------EDIL---PPDQSHWLTQLRSQSATPIATGELFNNPMEWQEL 290 (421)
T ss_dssp SSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE-------ECCS---CGGGGGGHHHHHTTCCCCEEECTTCCSGGGTHHH
T ss_pred CceEeccccccCCHHHHHHHHHHhhhhhhccc-------ccCC---cccchHHHHHHHhcCCCCeecCcceehhHHHHHH
Confidence 57788887778999999999999999999887 2211 1357888999999999999999999999999999
Q ss_pred HHhcCcceeee
Q 013813 305 LEETGCEGVLS 315 (436)
Q Consensus 305 l~~tGaDgVmI 315 (436)
++...+|.|++
T Consensus 291 i~~~a~d~v~~ 301 (421)
T 4hnl_A 291 VKNRQIDFMRA 301 (421)
T ss_dssp HHTTCCSEECC
T ss_pred HhcCCceEEEe
Confidence 99878898875
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.82 E-value=4e-05 Score=73.41 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=60.0
Q ss_pred HHHHHHcCccEEEeccCcccc-cCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDE-KDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~-~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++.+.+.|+|+|.+....... +.+. .+..++.++++++. .++||++.||| +.+++.++++. |+|+|.+|++++.
T Consensus 148 a~~A~~~GaDyI~vgpvf~T~tK~~~-~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~a-Ga~gvav~sai~~ 224 (243)
T 3o63_A 148 VAAAAAGDADYFCVGPCWPTPTKPGR-AAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDA-GARRIVVVRAITS 224 (243)
T ss_dssp HHHHHHSSCSEEEECCSSCCCC------CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHT-TCCCEEESHHHHT
T ss_pred HHHHhhCCCCEEEEcCccCCCCCCCc-chhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHc-CCCEEEEeHHHhC
Confidence 445667999999986543221 1111 24678999999886 58999999999 89999999985 9999999999988
Q ss_pred CCccch
Q 013813 322 NPALFA 327 (436)
Q Consensus 322 nP~lf~ 327 (436)
.++...
T Consensus 225 a~dp~~ 230 (243)
T 3o63_A 225 ADDPRA 230 (243)
T ss_dssp CSSHHH
T ss_pred CCCHHH
Confidence 766543
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=97.82 E-value=4e-05 Score=74.52 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=89.6
Q ss_pred CCCCEEEEecCCCHH-HHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEE
Q 013813 156 EDRPLFVQFCANDPE-ILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 231 (436)
Q Consensus 156 ~e~plivQL~g~d~e-~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVK 231 (436)
.+.|++.|+.+.||- .+....+.+ +.||.+| +|+ |..--..|.|...|..+.--..++++.|+.+- ++--.+-
T Consensus 93 ~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~--ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~ 169 (286)
T 2p10_A 93 RHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNF--PTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPY 169 (286)
T ss_dssp SSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EEC--SCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCE
T ss_pred CCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EEC--CCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 478999999999874 222333444 4599999 997 43222233444444443323333444433322 2211111
Q ss_pred eccCCChhhHHHHHHHHHHcCccEEEeccC-cccccCCCCCc---cC-HHHHHHHHhh-----CCCcEEEcc-CCCCHHH
Q 013813 232 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGR-TRDEKDGKKFR---AD-WNAIKAVKNA-----LRIPVLANG-NVRHMED 300 (436)
Q Consensus 232 iRlg~~~~d~~~~ak~le~aG~d~I~VHgR-t~~~~~~~~g~---ad-~~~i~~ik~~-----~~iPVianG-GI~s~ed 300 (436)
. .+.+ -++.+.++|+|.|.+|.. |..+.-+.... .+ -+.+.++.+. .++.|+.-| +|.+++|
T Consensus 170 v---~~~e----eA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeD 242 (286)
T 2p10_A 170 V---FSPE----DAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPED 242 (286)
T ss_dssp E---CSHH----HHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHH
T ss_pred c---CCHH----HHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHH
Confidence 0 1223 356677899999999965 33221111111 12 2344444332 256666554 9999999
Q ss_pred HHHHHHhc-CcceeeeehHHhhCC
Q 013813 301 VQKCLEET-GCEGVLSAESLLENP 323 (436)
Q Consensus 301 a~~~l~~t-GaDgVmIGRgal~nP 323 (436)
++.+++.+ |++|+..++++..=|
T Consensus 243 v~~~l~~t~G~~G~~gASsier~p 266 (286)
T 2p10_A 243 ARFILDSCQGCHGFYGASSMERLP 266 (286)
T ss_dssp HHHHHHHCTTCCEEEESHHHHHHH
T ss_pred HHHHHhcCCCccEEEeehhhhcCC
Confidence 99999865 599999999987665
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00035 Score=72.37 Aligned_cols=125 Identities=8% Similarity=0.051 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
|.+++++++.++ .++.||..|-|+.|+ +++.-.+.++++++.+ ++++.|...-+++..+++
T Consensus 199 ~~~~e~~~~~a~~~~~~Gf~~~KlKvG~----------------~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~ 262 (441)
T 4a35_A 199 GYSDDTLKQLCAQALKDGWTRFKVKVGA----------------DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAV 262 (441)
T ss_dssp TCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 568999988775 567799999999875 3455566778888876 578999988899999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh---CCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~---~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++++.+++.|+.+| ++... +-|++..+++++. +++||.+.-.+.+..++.++++...+|.|++-
T Consensus 263 ~~~~~L~~~~~~~i-------EeP~~---~~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~~a~div~~d 329 (441)
T 4a35_A 263 EWMSKLAKFKPLWI-------EEPTS---PDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAKALQFLQID 329 (441)
T ss_dssp HHHHHHGGGCCSEE-------ECCSC---TTCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred HHHHhhcccCccEE-------eCCCC---cccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHcCCCCEEEEC
Confidence 99999999998887 22111 3578888899887 78999999999999999999998889998864
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.3e-05 Score=73.02 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCccccccc---CChHHHHHHHHHHhcccCccEEEEecc--C-CChhh-HHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQD-TIK 243 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll---~~p~~v~eIv~av~~~~~iPVsVKiRl--g-~~~~d-~~~ 243 (436)
...++...++.|+|.||+=+ ++|..+. .+.+.+.+-++++++.++ +..+|+=+ + .+.++ ...
T Consensus 102 K~~Ea~~Av~~GAdEIDmVi----------nig~lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~ 170 (297)
T 4eiv_A 102 VSLEAVGALKDGADEIECLI----------DWRRMNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISR 170 (297)
T ss_dssp HHHHHHHHHHTTCSEEEEEC----------CTHHHHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeee----------eHHHHhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHH
Confidence 44466677889999999753 2565555 578889988888888874 44566533 2 22234 567
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC------------------------CCcEEEc-cCCCCH
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL------------------------RIPVLAN-GNVRHM 298 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~------------------------~iPVian-GGI~s~ 298 (436)
.++.+.++|+|+|-- ..++ .++.+..+.++.+++.+ ++-|=++ |||+|.
T Consensus 171 A~~ia~~AGADFVKT----STGf--~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~ 244 (297)
T 4eiv_A 171 AAVAALEGGADFLQT----SSGL--GATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMA 244 (297)
T ss_dssp HHHHHHHHTCSEEEC----CCSS--SSCCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHH
T ss_pred HHHHHHHhCCCEEEc----CCCC--CCCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCH
Confidence 788889999999933 2221 11245555555544433 4789999 999999
Q ss_pred HHHHHHHHh
Q 013813 299 EDVQKCLEE 307 (436)
Q Consensus 299 eda~~~l~~ 307 (436)
+|+.++++.
T Consensus 245 e~A~~~i~~ 253 (297)
T 4eiv_A 245 ETADFLMQM 253 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999986
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00012 Score=70.79 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccC---CChhh-HHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF---PNLQD-TIKYA 245 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg---~~~~d-~~~~a 245 (436)
...++...++.|+|.||+-+ ++|..+-.+.+.+.+-+.++++.++ -+..+|+=+- .+.++ ....+
T Consensus 87 Kv~E~~~Av~~GAdEIDmVi----------nig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~ 156 (260)
T 1p1x_A 87 ALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKAS 156 (260)
T ss_dssp HHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEec----------cHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHH
Confidence 33455566788999999875 2565566678888888888887763 1334454331 12244 56788
Q ss_pred HHHHHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhh-------CCCcEEEccCCCCHHHHHHHHHh
Q 013813 246 KMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA-------LRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 246 k~le~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~-------~~iPVianGGI~s~eda~~~l~~ 307 (436)
+.+.++|+|+|-.. |-. ++.+..+.++.+++. .+++|-++|||+|.+++.++++.
T Consensus 157 ~ia~eaGADfVKTSTGf~-------~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~a 219 (260)
T 1p1x_A 157 EISIKAGADFIKTSTGKV-------AVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI 219 (260)
T ss_dssp HHHHHTTCSEEECCCSCS-------SCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHH
T ss_pred HHHHHhCCCEEEeCCCCC-------CCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHh
Confidence 88999999999432 211 135667766666555 36999999999999999999986
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00018 Score=70.26 Aligned_cols=119 Identities=13% Similarity=0.224 Sum_probs=80.7
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChH---HHHHHHHHHhcccCccEEEEeccC---CChhh-HHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP---LVKSLVEKLALNLNVPVSCKIRVF---PNLQD-TIK 243 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~---~v~eIv~av~~~~~iPVsVKiRlg---~~~~d-~~~ 243 (436)
...++...++.|+|+||+-+ ++|..+..+.+ .+.+-+.++++.++ ...+|+=+. .+.++ ...
T Consensus 108 Kv~E~~~Av~~GAdEIDmVi----------nig~lksg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~ 176 (281)
T 2a4a_A 108 VLNDTEKALDDGADEIDLVI----------NYKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIK 176 (281)
T ss_dssp HHHHHHHHHHHTCSEEEEEC----------CHHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEec----------chHhhhCCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHH
Confidence 34455566788999999875 25555556677 88888899988874 234554332 12234 557
Q ss_pred HHHHHHHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhh------------CCCcEEEccCCCCHHHHHHHHHh
Q 013813 244 YAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA------------LRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 244 ~ak~le~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~------------~~iPVianGGI~s~eda~~~l~~ 307 (436)
.++.+.++|+|+|-.. |-. ++.+..+.++.+++. .+++|-++|||+|.+|+.++++.
T Consensus 177 A~~ia~eaGADfVKTSTGf~-------~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~a 246 (281)
T 2a4a_A 177 TTLAVLNGNADFIKTSTGKV-------QINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILL 246 (281)
T ss_dssp HHHHHHTTTCSEEECCCSCS-------SCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEeCCCCC-------CCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHH
Confidence 7888999999999432 221 123444444444433 36999999999999999999986
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7.3e-05 Score=71.15 Aligned_cols=83 Identities=11% Similarity=0.136 Sum_probs=64.0
Q ss_pred hhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 238 LQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 238 ~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+++...|... +=.|..+|-+-+ ... ..+.++++++++.+ ++||+..|||+++++++++++ |||+|++
T Consensus 144 ~e~iaa~A~~a~~~~g~~~vY~e~-sG~-------~g~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~--gAD~VVV 213 (235)
T 3w01_A 144 TEDLEAYAQMVNHMYRLPVMYIEY-SGI-------YGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA--IADTIIV 213 (235)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEC-TTS-------CCCHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT--TSSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEec-CCC-------cCCHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc--CCCEEEE
Confidence 34455555533 235777776654 321 12689999999998 999999999999999998775 8999999
Q ss_pred ehHHhhCCccchhhh
Q 013813 316 AESLLENPALFAGFR 330 (436)
Q Consensus 316 GRgal~nP~lf~~i~ 330 (436)
|.++..||..+.++.
T Consensus 214 GSai~~~~~~~~e~v 228 (235)
T 3w01_A 214 GDIIYKDIKKALKTV 228 (235)
T ss_dssp CTHHHHCHHHHHHTT
T ss_pred CCceecCHHHHHHHH
Confidence 999999999888764
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00036 Score=67.07 Aligned_cols=142 Identities=12% Similarity=0.100 Sum_probs=107.3
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
-+.|++-+=|.-++-++.+ ..+.|+|+|=|+..+ + +.+.+.++++..++ .|+.+.|-+.
T Consensus 100 v~lPvLrKDfi~~~~qi~e---a~~~GAD~ilLi~a~--------------l-~~~~l~~l~~~a~~-lGl~~lvEv~-- 158 (251)
T 1i4n_A 100 TCRPILAKDFYIDTVQVKL---ASSVGADAILIIARI--------------L-TAEQIKEIYEAAEE-LGMDSLVEVH-- 158 (251)
T ss_dssp CCSCEEEECCCCSTHHHHH---HHHTTCSEEEEEGGG--------------S-CHHHHHHHHHHHHT-TTCEEEEEEC--
T ss_pred CCCCEEEeeCCCCHHHHHH---HHHcCCCEEEEeccc--------------C-CHHHHHHHHHHHHH-cCCeEEEEeC--
Confidence 4689999988877765444 446799999999542 1 23678888887765 5888877753
Q ss_pred CChhhHHHHHHHHHHc-CccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 236 PNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 236 ~~~~d~~~~ak~le~a-G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
+.++ ++.+.++ |++.|-++.|.-.. . ..|++...++.+.+ ++++|+-|||.|++|+.++.+. +|+
T Consensus 159 -~~eE----~~~A~~l~g~~iIGinnr~l~t---~--~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~--a~a 226 (251)
T 1i4n_A 159 -SRED----LEKVFSVIRPKIIGINTRDLDT---F--EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK--VNA 226 (251)
T ss_dssp -SHHH----HHHHHTTCCCSEEEEECBCTTT---C--CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT--CSE
T ss_pred -CHHH----HHHHHhcCCCCEEEEeCccccc---C--CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh--CCE
Confidence 2232 4556678 99999999986432 2 56788888887776 6899999999999999999874 999
Q ss_pred eeeehHHhhCCccchhhh
Q 013813 313 VLSAESLLENPALFAGFR 330 (436)
Q Consensus 313 VmIGRgal~nP~lf~~i~ 330 (436)
|.||++++..++.-..++
T Consensus 227 vLVG~aimr~~d~~~~~~ 244 (251)
T 1i4n_A 227 VLVGTSIMKAENPRRFLE 244 (251)
T ss_dssp EEECHHHHHCSSHHHHHH
T ss_pred EEEcHHHcCCcCHHHHHH
Confidence 999999999887665443
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=7.6e-05 Score=70.91 Aligned_cols=144 Identities=16% Similarity=0.260 Sum_probs=97.8
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcE--EEEecCC--CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDY--VDINLGC--PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~--IdLN~GC--P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+..+|...|...+.++.+.++.|+|. ||+--|. |+ . .+| ..+++++++.++.|+.|-+=..
T Consensus 3 i~pSila~D~~~l~~~i~~~~~gad~lHvDvmDG~fvpn--~---t~G----------~~~v~~lr~~~~~~~dvhLmv~ 67 (231)
T 3ctl_A 3 ISPSLMCMDLLKFKEQIEFIDSHADYFHIDIMDGHFVPN--L---TLS----------PFFVSQVKKLATKPLDCHLMVT 67 (231)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHTTCSCEEEEEECSSSSSC--C---CBC----------HHHHHHHHTTCCSCEEEEEESS
T ss_pred EEeehhhCChhhHHHHHHHHHcCCCEEEEEEEeCccCcc--c---hhc----------HHHHHHHHhccCCcEEEEEEec
Confidence 56788888999999999888778887 5554454 43 1 123 3477788887777777765442
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCc-ccc--------------------------c-----------------CCCCC
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRT-RDE--------------------------K-----------------DGKKF 271 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt-~~~--------------------------~-----------------~~~~g 271 (436)
+ +..+++.+.++|+|.|++|.-. ... . .++.|
T Consensus 68 -d---p~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfgg 143 (231)
T 3ctl_A 68 -R---PQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAG 143 (231)
T ss_dssp -C---GGGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSS
T ss_pred -C---HHHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCC
Confidence 2 2335677778888888887544 100 0 01111
Q ss_pred ----ccCHHHHHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCcceeeee-hHHhhCCc
Q 013813 272 ----RADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSA-ESLLENPA 324 (436)
Q Consensus 272 ----~ad~~~i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGaDgVmIG-Rgal~nP~ 324 (436)
+..++.++++++.. +++|.+-|||+ .+.+.++.+. |||.+.+| ++++..++
T Consensus 144 Q~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~a-GAd~~V~G~saif~~~d 204 (231)
T 3ctl_A 144 QPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAA-GADVFIVGTSGLFNHAE 204 (231)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHH-TCCEEEECTTTTGGGCS
T ss_pred ccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHc-CCCEEEEccHHHhCCCC
Confidence 22356667776654 68999999998 5888888886 99999999 99887554
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00057 Score=68.90 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=104.4
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
.|+...+...+++++++.++ .++.|+..|-+..|.. +++.-.+.++++++.+ +..+.|...-+
T Consensus 133 v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iK~Kvg~~---------------~~~~d~~~v~avr~~~~~~~l~vDaN~~ 197 (365)
T 3ik4_A 133 LETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGV---------------DVAYDLARLRAIHQAAPTAPLIVDGNCG 197 (365)
T ss_dssp EEBCEEECCSCHHHHHHHHHHHHHTTCCCEEEECCSS---------------CHHHHHHHHHHHHHHSSSCCEEEECTTC
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCCCEEEEEeCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 34556677789999888775 5677999999987632 3555666777777766 46777777778
Q ss_pred CChhhHHHHHHHH--HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 236 PNLQDTIKYAKML--EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 236 ~~~~d~~~~ak~l--e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
|+.+++.++++.+ ++.++.+|- ++. .+.|++..+++++.+++||.+.-.+.+.+++.++++...+|.|
T Consensus 198 ~~~~~A~~~~~~L~~~~~~i~~iE------eP~----~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v 267 (365)
T 3ik4_A 198 YDVERALAFCAACKAESIPMVLFE------QPL----PREDWAGMAQVTAQSGFAVAADESARSAHDVLRIAREGTASVI 267 (365)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEE------CCS----CTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHHTCCSEE
T ss_pred CCHHHHHHHHHHHhhCCCCceEEE------CCC----CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEE
Confidence 9999999999999 777776663 111 1347899999999999999999999999999999998789998
Q ss_pred eee
Q 013813 314 LSA 316 (436)
Q Consensus 314 mIG 316 (436)
++-
T Consensus 268 ~ik 270 (365)
T 3ik4_A 268 NIK 270 (365)
T ss_dssp EEC
T ss_pred EEc
Confidence 764
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=97.74 E-value=4e-05 Score=81.69 Aligned_cols=92 Identities=11% Similarity=0.136 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCH-----------HHHHHHHHh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-----------EDVQKCLEE 307 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~-----------eda~~~l~~ 307 (436)
.++.++|+.+++.|++.|++..-+...........+.+.++++++.+.+||++.|||++. ++++++++.
T Consensus 280 ~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~a 359 (555)
T 1jvn_A 280 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRS 359 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHc
Confidence 478899999999999999886544321100011235788999999899999999999998 559999986
Q ss_pred cCcceeeeehHHhh-------------CCccchhhhh
Q 013813 308 TGCEGVLSAESLLE-------------NPALFAGFRT 331 (436)
Q Consensus 308 tGaDgVmIGRgal~-------------nP~lf~~i~~ 331 (436)
|||.|.||++++. ||.+++++..
T Consensus 360 -Gad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~ 395 (555)
T 1jvn_A 360 -GADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISK 395 (555)
T ss_dssp -TCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHH
T ss_pred -CCCEEEECCHHhhCchhhccccccccCHHHHHHHHH
Confidence 9999999999988 4788887754
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00035 Score=66.12 Aligned_cols=139 Identities=8% Similarity=0.138 Sum_probs=95.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHH---HHhcccCccEEEEe
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE---KLALNLNVPVSCKI 232 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~---av~~~~~iPVsVKi 232 (436)
++.|+.+.|+-+||+.+.+.. ++ +|.|-+|..... .+ +.+.++ .+++ .++-+.|=+
T Consensus 63 p~~~~dvhLmv~dp~~~i~~~--~~--Ad~itvH~ea~~-------------~~---~~~~i~~~~~i~~-~G~k~gval 121 (227)
T 1tqx_A 63 KSIFFDVHLMVEYPEKYVPLL--KT--SNQLTFHFEALN-------------ED---TERCIQLAKEIRD-NNLWCGISI 121 (227)
T ss_dssp SSCEEEEEEESSCGGGGGGGC--TT--SSEEEEEGGGGT-------------TC---HHHHHHHHHHHHT-TTCEEEEEE
T ss_pred CCCcEEEEEEEcCHHHHHHHH--Hh--CCEEEEeecCCc-------------cC---HHHHHHHHHHHHH-cCCeEEEEe
Confidence 368999999999999765332 22 899999964211 02 345555 6654 355555554
Q ss_pred ccCCChhhHHHHHHHHHHcC-ccEE---EeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHh
Q 013813 233 RVFPNLQDTIKYAKMLEDAG-CSLL---AVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG-~d~I---~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~ 307 (436)
..... .+.++.+.+.| +|.| +||.....|.. .+..++.++++++.. +++|.+.|||+ .+.+.++.+.
T Consensus 122 np~tp----~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f---~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~ti~~~~~a 193 (227)
T 1tqx_A 122 KPKTD----VQKLVPILDTNLINTVLVMTVEPGFGGQSF---MHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISASH 193 (227)
T ss_dssp CTTSC----GGGGHHHHTTTCCSEEEEESSCTTCSSCCC---CGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHHH
T ss_pred CCCCc----HHHHHHHhhcCCcCEEEEeeeccCCCCccc---chHHHHHHHHHHHhccCCeEEEECCCC-HHHHHHHHHc
Confidence 33333 23344455665 9999 45555444322 245678888888876 79999999998 7899999886
Q ss_pred cCcceeeeehHHhhCCc
Q 013813 308 TGCEGVLSAESLLENPA 324 (436)
Q Consensus 308 tGaDgVmIGRgal~nP~ 324 (436)
|||.+.+|++++..++
T Consensus 194 -GAd~~V~GsaIf~~~d 209 (227)
T 1tqx_A 194 -GANIIVAGTSIFNAED 209 (227)
T ss_dssp -TCCEEEESHHHHTCSS
T ss_pred -CCCEEEEeHHHhCCCC
Confidence 9999999999988665
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=76.17 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=78.4
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
++..+++.++|.+-+.- .|+. ...+.+.++.+++..++||.+|- ++ +. +-++.+. |+
T Consensus 232 ~a~~l~~~gvd~lvvdt-----------a~G~----~~~~L~~I~~l~~~~~vpvi~k~-v~-~~----~~a~~l~--G~ 288 (486)
T 2cu0_A 232 RAIELDKAGVDVIVVDT-----------AHAH----NLKAIKSMKEMRQKVDADFIVGN-IA-NP----KAVDDLT--FA 288 (486)
T ss_dssp HHHHHHHTTCSEEEEEC-----------SCCC----CHHHHHHHHHHHHTCCSEEEEEE-EC-CH----HHHTTCT--TS
T ss_pred HHHHHHHhcCCceEEEe-----------cCCc----EeehhhHHHHHHHHhCCccccCC-cC-CH----HHHHHhh--CC
Confidence 33345567888876552 1111 12344556777777799999882 11 22 2344444 99
Q ss_pred cEEEeccCccccc------CCCCCc---cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 254 SLLAVHGRTRDEK------DGKKFR---ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 254 d~I~VHgRt~~~~------~~~~g~---ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
|.|.+ |.-.... .+. |. ..+..+.++++..++|||+.|||.+..|+.++|.. |||+||+|+.++.-
T Consensus 289 d~v~v-g~g~g~~~~~r~~~~~-g~~~~~~l~~~~~~~~~~~vpVia~GGi~~~~di~kalal-GA~~v~~g~~~~~~ 363 (486)
T 2cu0_A 289 DAVKV-GIGPGSICTTRIVAGV-GVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAA-GADAVMLGNLLAGT 363 (486)
T ss_dssp SEEEE-CSSCSTTBCHHHHTCC-CCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTB
T ss_pred CeEEE-eeeeccceeeeEEeec-CcchHHHHHHHHHHHHHcCCcEEecCCCCCHHHHHHHHHc-CCCceeeChhhhcC
Confidence 99998 3211100 011 11 12334455566668999999999999999999985 99999999998854
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.3e-05 Score=71.19 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=58.0
Q ss_pred HHHHHHHHcCc-----cEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 243 KYAKMLEDAGC-----SLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 243 ~~ak~le~aG~-----d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+.++...+.|. ..|-+-+ +.. ..+.++++++++.+ ++||++.|||+|+++++++++ |||+|.+|
T Consensus 149 e~~~~~a~~g~~~l~~~~Vyl~~-~G~-------~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~--gAd~VIVG 218 (234)
T 2f6u_A 149 ELAASYALVGEKLFNLPIIYIEY-SGT-------YGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR--YADTIIVG 218 (234)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEC-TTS-------CCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH--HSSEEEEC
T ss_pred HHHHHHHHhhhhhcCCCEEEEeC-CCC-------cchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh--CCCEEEEC
Confidence 44555555554 5555544 221 34789999999999 999999999999999999876 89999999
Q ss_pred hHHhhCCccc
Q 013813 317 ESLLENPALF 326 (436)
Q Consensus 317 Rgal~nP~lf 326 (436)
+++..+|.-+
T Consensus 219 Sa~v~~~~~~ 228 (234)
T 2f6u_A 219 NVIYEKGIDA 228 (234)
T ss_dssp HHHHHHCHHH
T ss_pred hHHHhCHHHH
Confidence 9999998644
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00059 Score=69.92 Aligned_cols=127 Identities=12% Similarity=0.107 Sum_probs=96.0
Q ss_pred HHHcCCCcEEEEecCCCchhhhcCcccccc-cCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 177 RRVEPYCDYVDINLGCPQRIARRGNYGAFL-MDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 177 ~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~L-l~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
+.++.||..+-++ |...... .-|..+ ..+++...+.+++|++.+ ++++.|...-+++.++++.+++.+++.|+
T Consensus 166 ~~~~~G~~~~K~~---~~~~~~~-K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i 241 (410)
T 3dip_A 166 SLVAEGYAAMKIW---PFDDFAS-ITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGV 241 (410)
T ss_dssp HHHHTTCSEEEEC---TTHHHHT-TCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTC
T ss_pred HHHHcCCCEEEEC---CccCccc-cccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 4567899999997 2211110 112211 113456778889999887 47899988888999999999999999999
Q ss_pred cEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 254 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 254 d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++|-- +.. .+-|++..+++++.+++||.+.+.+.+.++++++++...+|.|++-
T Consensus 242 ~~iEq------P~~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 295 (410)
T 3dip_A 242 LWVED------PIA---KMDNIPAVADLRRQTRAPICGGENLAGTRRFHEMLCADAIDFVMLD 295 (410)
T ss_dssp SEEEC------CBS---CTTCHHHHHHHHHHHCCCEEECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred CEEEC------CCC---CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCeEeec
Confidence 98841 100 1347888999999999999999999999999999998789998864
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.6e-05 Score=74.32 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.+++-.-.. .+.+.++++++.+.+||...|||++. ++++++ . |||-|.+|..
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvDL~~---------~n~~~i~~i~~~~~~pv~vgGGir~~-~~~~~l-~-Ga~~Viigs~ 105 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIKLGP---------NNDDAAREALQESPQFLQVGGGINDT-NCLEWL-K-WASKVIVTSW 105 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEEESS---------SCHHHHHHHHHHSTTTSEEESSCCTT-THHHHT-T-TCSCEEECGG
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCC---------CCHHHHHHHHhcCCceEEEeCCCCHH-HHHHHh-c-CCCEEEECcH
Confidence 5788999999999999998843321 35788999999999999999999987 999999 4 9999999999
Q ss_pred HhhC-----Cccchhhhh
Q 013813 319 LLEN-----PALFAGFRT 331 (436)
Q Consensus 319 al~n-----P~lf~~i~~ 331 (436)
++.| |.++.++..
T Consensus 106 a~~~~g~~~p~~~~~~~~ 123 (260)
T 2agk_A 106 LFTKEGHFQLKRLERLTE 123 (260)
T ss_dssp GBCTTCCBCHHHHHHHHH
T ss_pred HHhhcCCCCHHHHHHHHH
Confidence 9999 998887653
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00038 Score=71.08 Aligned_cols=128 Identities=13% Similarity=0.007 Sum_probs=96.5
Q ss_pred HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCcc
Q 013813 177 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 177 ~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d 254 (436)
+.++.||..+-+..|-|...... .|..-..+++...+.+++|++.+ ++++.|...-+++.++++.+++.+++.|++
T Consensus 162 ~~~~~G~~~~Kik~g~~~~~~~~--~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~ 239 (400)
T 4dxk_A 162 SLLEDGITAMKIWPFDAAAEKTR--GQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTF 239 (400)
T ss_dssp HHHHTTCCEEEECTTHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCS
T ss_pred HHHHhCCCEEEEcCCCccccccc--cCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence 45678999999986633210000 11000123566778888999887 478899888889999999999999999999
Q ss_pred EEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 255 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 255 ~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+|.- +. . +.|++..+++++.+++||.+.+.+.+.++++++++...+|.|++-
T Consensus 240 ~iEe------P~-~---~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d 291 (400)
T 4dxk_A 240 WHED------PI-K---MDSLSSLTRYAAVSPAPISASETLGSRWAFRDLLETGAAGVVMLD 291 (400)
T ss_dssp EEEC------CB-C---TTSGGGHHHHHHHCSSCEEECTTCCHHHHHHHHHHTTCCCEEEEC
T ss_pred EEEc------CC-C---cccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 8851 11 1 236777899999999999999999999999999998778998864
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00097 Score=68.08 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=102.3
Q ss_pred HHHHHHHHH-HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHH
Q 013813 169 PEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYA 245 (436)
Q Consensus 169 ~e~~~~AA~-~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~a 245 (436)
++++++.++ .++. |+..|-+..| .+++.-.+.++++++.+ ++++.|...-+|+.++++.++
T Consensus 169 ~e~~~~~a~~~~~~~G~~~~K~KvG----------------~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~ 232 (398)
T 4dye_A 169 PKAMAEHAVRVVEEGGFDAVKLKGT----------------TDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAG 232 (398)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECC----------------SCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecC----------------CCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHH
Confidence 577777664 5677 9999999875 13455566777777776 678899888899999999999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+.+++.|+.+|- + .. + |++..+++++.+++||.+...+.+.+++.++++...+|.|++--+-.+.
T Consensus 233 ~~l~~~~i~~iE-------q--P~--~-d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GG 297 (398)
T 4dye_A 233 IALEELDLEYLE-------D--PC--V-GIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGG 297 (398)
T ss_dssp HHHGGGCCSEEE-------C--CS--S-HHHHHHHHHHHCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTS
T ss_pred HHHhhcCCCEEc-------C--CC--C-CHHHHHHHHhhCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccCC
Confidence 999999999883 2 12 3 7888999999999999999999999999999998889999987555443
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0032 Score=65.33 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=108.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+.|+.-+=|.-++-++.+ ....|+|+|=|++.+ + +.+.+.++++..++ .++.+.|-+..
T Consensus 108 ~lPvLrKDFI~d~~Qi~e---a~~~GAD~ILLi~a~--------------l-~~~~l~~l~~~a~~-lgm~~LvEvh~-- 166 (452)
T 1pii_A 108 PQPILCKDFIIDPYQIYL---ARYYQADACLLMLSV--------------L-DDDQYRQLAAVAHS-LEMGVLTEVSN-- 166 (452)
T ss_dssp CSCEEEESCCCSHHHHHH---HHHTTCSEEEEETTT--------------C-CHHHHHHHHHHHHH-TTCEEEEEECS--
T ss_pred CCCeEEEeccCCHHHHHH---HHHcCCCEEEEEccc--------------C-CHHHHHHHHHHHHH-cCCeEEEEeCC--
Confidence 678888888878765444 445799999999643 1 24677888887765 58888777532
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.++ ++.+.++|++.|-+..|.-.. ...|++...++.+.+ ++++|+-|||.|++|+.++.+. +|+|.
T Consensus 167 -~eE----~~~A~~lga~iIGinnr~L~t-----~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~--a~avL 234 (452)
T 1pii_A 167 -EEE----QERAIALGAKVVGINNRDLRD-----LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF--ANGFL 234 (452)
T ss_dssp -HHH----HHHHHHTTCSEEEEESEETTT-----TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT--CSEEE
T ss_pred -HHH----HHHHHHCCCCEEEEeCCCCCC-----CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh--CCEEE
Confidence 222 455667899999998886432 257888888888775 6899999999999999999875 99999
Q ss_pred eehHHhhCCccchhhhh
Q 013813 315 SAESLLENPALFAGFRT 331 (436)
Q Consensus 315 IGRgal~nP~lf~~i~~ 331 (436)
||.+++..++.-..++.
T Consensus 235 VGealmr~~d~~~~~~~ 251 (452)
T 1pii_A 235 IGSALMAHDDLHAAVRR 251 (452)
T ss_dssp ECHHHHTCSCHHHHHHH
T ss_pred EcHHHcCCcCHHHHHHH
Confidence 99999999987665553
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00079 Score=64.12 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=89.4
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--------CccEEEEe
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--------NVPVSCKI 232 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--------~iPVsVKi 232 (436)
=+-|+.++|+.+.+.+ ++.|+|+|-+|.+.. +.+.++++.+++.. ++-+.+=+
T Consensus 73 DvhLMv~~p~~~i~~~--~~aGAd~itvH~ea~-----------------~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l 133 (237)
T 3cu2_A 73 DVHLMVRNQLEVAKAV--VANGANLVTLQLEQY-----------------HDFALTIEWLAKQKTTYANQVYPVLIGACL 133 (237)
T ss_dssp EEEEECSCHHHHHHHH--HHTTCSEEEEETTCT-----------------TSHHHHHHHHTTCEEEETTEEEECEEEEEE
T ss_pred CeEEEEECHHHHHHHH--HHcCCCEEEEecCCc-----------------ccHHHHHHHHHhcccccccccCCceEEEEE
Confidence 7888889998877766 567999999996421 11456777776541 33344443
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEe---ccCcccccCCCCCccCHHHHHHHHhhC-----CCcEEEccCCCCHHHHHHH
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~~-----~iPVianGGI~s~eda~~~ 304 (436)
......+.. +.+. .++|.|.+ ++....|.. .+..++.++++++.. ++||.+-|||+ .+.+..+
T Consensus 134 ~p~Tp~~~l----~~~l-~~~D~vlvMsv~pgfggq~f---~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~ 204 (237)
T 3cu2_A 134 CPETPISEL----EPYL-DQIDVIQLLTLDPRNGTKYP---SELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYF 204 (237)
T ss_dssp CTTSCGGGG----TTTT-TTCSEEEEESEETTTTEECC---HHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHH
T ss_pred eCCChHHHH----HHHh-hcCceeeeeeeccCcCCeec---ChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHH
Confidence 333222222 2122 36898844 776665432 234466677777765 68999999998 7889998
Q ss_pred HH--hcCcceeeeehHHhhC
Q 013813 305 LE--ETGCEGVLSAESLLEN 322 (436)
Q Consensus 305 l~--~tGaDgVmIGRgal~n 322 (436)
.+ . |||++.+|++++..
T Consensus 205 ~~~~a-Gad~~VvGSaIf~~ 223 (237)
T 3cu2_A 205 KQGTH-QIDWLVSGSALFSG 223 (237)
T ss_dssp HHSSS-CCCCEEECGGGGSS
T ss_pred HHhCC-CCcEEEEeeHHhCC
Confidence 87 6 99999999998874
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00035 Score=64.89 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=56.2
Q ss_pred HHHHHHcCccEEEeccCcccc-cCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDE-KDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~-~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+..++ .|+|+|.+.+-.... +.+...+.+|+.++.+++. .++||++.|||+ ++.+.++++ .|++||.+++++..
T Consensus 101 ~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~-~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 101 VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKD-FGFGGAVVLGDLWN 177 (210)
T ss_dssp HHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHH-TTCSEEEESHHHHT
T ss_pred HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHH-hCCCEEEEhHHhHc
Confidence 34446 899999875542211 1122124689999999887 689999999998 899999998 59999999999976
Q ss_pred CCc
Q 013813 322 NPA 324 (436)
Q Consensus 322 nP~ 324 (436)
.++
T Consensus 178 ~~d 180 (210)
T 3ceu_A 178 KFD 180 (210)
T ss_dssp TCC
T ss_pred CCC
Confidence 443
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0053 Score=60.34 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=123.2
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc--cc--chhhccChh--------hhhhhhhccCCCCCEEE
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM--LH--SRIFTESEK--------YRNEEFATCKEDRPLFV 162 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem--is--a~~l~~~~~--------~~~~~~~~~~~e~pliv 162 (436)
.||+.+.+...+. |.++=|..+-+++.+.|.+.+|+-- ++ ..++..... .... +. ...+.|+++
T Consensus 13 ~lr~l~~~~~~i~--~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~-I~-r~~~~Pvia 88 (298)
T 3eoo_A 13 KFRAAVAAEQPLQ--VVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANR-IT-NATNLPLLV 88 (298)
T ss_dssp HHHHHHHHSSSEE--EEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHH-HH-HHCCSCEEE
T ss_pred HHHHHHhCCCcEE--EecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHH-HH-hhcCCeEEE
Confidence 4555444333333 4577788888999999999877543 11 111111100 0011 11 123578887
Q ss_pred Ee---cCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCccc-ccccCChHHHHHHHHHHhcccCccEEEEeccCC-
Q 013813 163 QF---CANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP- 236 (436)
Q Consensus 163 QL---~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~G-s~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~- 236 (436)
=+ +| +++...+.++.+ +.|+.+|.|--+.-.+ +.|+.+ ..|....+.+.+|-.++....+.++.|--|..-
T Consensus 89 D~d~Gyg-~~~~v~~~v~~l~~aGaagv~iEDq~~~k--~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~ 165 (298)
T 3eoo_A 89 DIDTGWG-GAFNIARTIRSFIKAGVGAVHLEDQVGQK--RCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAA 165 (298)
T ss_dssp ECTTCSS-SHHHHHHHHHHHHHTTCSEEEEECBCCCC--CTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTH
T ss_pred ECCCCCC-CHHHHHHHHHHHHHhCCeEEEECCCCCCc--ccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhh
Confidence 54 33 788888888654 5699999998653211 112223 344444444555544443333566666666632
Q ss_pred ---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc---cC---CCCHHHHHHHHHh
Q 013813 237 ---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GN---VRHMEDVQKCLEE 307 (436)
Q Consensus 237 ---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian---GG---I~s~eda~~~l~~ 307 (436)
..+++++=++...++|+|.|-+++.+ +.+.++++.+.+++||.+| || ..+.+++ -+
T Consensus 166 ~~~gldeai~Ra~ay~~AGAD~if~~~~~-----------~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~~eL---~~- 230 (298)
T 3eoo_A 166 AAEGIDAAIERAIAYVEAGADMIFPEAMK-----------TLDDYRRFKEAVKVPILANLTEFGSTPLFTLDEL---KG- 230 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECCCC-----------SHHHHHHHHHHHCSCBEEECCTTSSSCCCCHHHH---HH-
T ss_pred hhcCHHHHHHHHHhhHhcCCCEEEeCCCC-----------CHHHHHHHHHHcCCCeEEEeccCCCCCCCCHHHH---HH-
Confidence 35677788888999999999998763 3467888988889999876 33 3344433 33
Q ss_pred cCcceeeeehHHh
Q 013813 308 TGCEGVLSAESLL 320 (436)
Q Consensus 308 tGaDgVmIGRgal 320 (436)
-|+..|.+|-.++
T Consensus 231 lGv~~v~~~~~~~ 243 (298)
T 3eoo_A 231 ANVDIALYCCGAY 243 (298)
T ss_dssp TTCCEEEECSHHH
T ss_pred cCCeEEEEchHHH
Confidence 5999999986554
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0022 Score=64.66 Aligned_cols=134 Identities=6% Similarity=0.087 Sum_probs=101.4
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC---ccEEEEec
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN---VPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~---iPVsVKiR 233 (436)
.|+...+.+.+++.+.+.++ .++.|+..+-+..|. .+++.-.+.++++++.++ +.+.+...
T Consensus 152 vp~~~~i~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~~l~vDaN 216 (377)
T 2pge_A 152 IPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLKIGA---------------IDFDKECALLAGIRESFSPQQLEIRVDAN 216 (377)
T ss_dssp EEBCEEECCCCHHHHHHHHHHHHHTTCSEEEEEC------------------CHHHHHHHHHHHHHHSCTTTCEEEEECT
T ss_pred EEEeEEecCCCHHHHHHHHHHHHHHhhhhheeecCC---------------CChHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 34555567778988877664 567799999988653 245666777788877764 66777766
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHH--HHHHHHhcCcc
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED--VQKCLEETGCE 311 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~ed--a~~~l~~tGaD 311 (436)
-+++.++++++++.+++.++.+| ++.. .+-||+..+++++.+++||.+.-.+.+..+ ++++++...+|
T Consensus 217 ~~~~~~~a~~~~~~l~~~~i~~i-------EqP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d 286 (377)
T 2pge_A 217 GAFSPANAPQRLKRLSQFHLHSI-------EQPI---RQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDAIRPQ 286 (377)
T ss_dssp TBBCTTTHHHHHHHHHTTCCSEE-------ECCB---CSSCHHHHHHHHHHCSSCEEESGGGTTCCTHHHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHHhcCCCcEE-------EccC---CcccHHHHHHHHhhCCCcEEECCccCCcchHHHHHHHHhCCCC
Confidence 67888999999999999988776 2211 135799999999999999999999998888 77888887899
Q ss_pred eeeee
Q 013813 312 GVLSA 316 (436)
Q Consensus 312 gVmIG 316 (436)
.|++=
T Consensus 287 ~i~ik 291 (377)
T 2pge_A 287 YIILK 291 (377)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88763
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0018 Score=61.05 Aligned_cols=148 Identities=12% Similarity=0.188 Sum_probs=93.5
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCch--hhh--cC-------cccccccCChHHHHHHH--------
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR--IAR--RG-------NYGAFLMDNLPLVKSLV-------- 217 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~--~~~--~~-------~~Gs~Ll~~p~~v~eIv-------- 217 (436)
.|++.=|-+.+++++.+.++.+ +.|++.|++-+--|.. ..+ +. ++|. ++ +.+.+...+
T Consensus 17 ~~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGt-vl-~~d~~~~A~~aGAd~v~ 94 (224)
T 1vhc_A 17 LKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGT-VL-TAEQVVLAKSSGADFVV 94 (224)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEES-CC-SHHHHHHHHHHTCSEEE
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCc-Ee-eHHHHHHHHHCCCCEEE
Confidence 5677778888888888877654 5578998987643321 111 11 1233 22 444444333
Q ss_pred ---------HHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CC
Q 013813 218 ---------EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 287 (436)
Q Consensus 218 ---------~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~i 287 (436)
+..++ .+.++.+.+ ....+ +..+.+.|+|+|-++.- . .. + -.++++.++..+ ++
T Consensus 95 ~p~~d~~v~~~ar~-~g~~~i~Gv------~t~~e-~~~A~~~Gad~vk~Fpa--~-~~---g--G~~~lk~l~~~~~~i 158 (224)
T 1vhc_A 95 TPGLNPKIVKLCQD-LNFPITPGV------NNPMA-IEIALEMGISAVKFFPA--E-AS---G--GVKMIKALLGPYAQL 158 (224)
T ss_dssp CSSCCHHHHHHHHH-TTCCEECEE------CSHHH-HHHHHHTTCCEEEETTT--T-TT---T--HHHHHHHHHTTTTTC
T ss_pred ECCCCHHHHHHHHH-hCCCEEecc------CCHHH-HHHHHHCCCCEEEEeeC--c-cc---c--CHHHHHHHHhhCCCC
Confidence 33333 344444431 11222 45567899999999661 1 00 0 157889999887 89
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
||++.|||+ .+.+.++++..|+++|. |+++...+.+
T Consensus 159 pvvaiGGI~-~~N~~~~l~agga~~v~-gS~i~~~~~i 194 (224)
T 1vhc_A 159 QIMPTGGIG-LHNIRDYLAIPNIVACG-GSWFVEKKLI 194 (224)
T ss_dssp EEEEBSSCC-TTTHHHHHTSTTBCCEE-ECGGGCHHHH
T ss_pred eEEEECCcC-HHHHHHHHhcCCCEEEE-EchhcCcchh
Confidence 999999995 68999999866999999 8877665543
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0025 Score=59.22 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=86.9
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhH
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDT 241 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~ 241 (436)
+-++ ..|+.+.+ ..++.|+|.|-+|... | .+.+.++++.+++ .+.++.+++-.+.+..
T Consensus 63 ~kl~-dip~t~~~--~~~~~Gad~itvh~~~----------g------~~~l~~~~~~~~~-~g~~~~~~ll~~~t~~-- 120 (216)
T 1q6o_A 63 AKIA-DAGKILSR--MCFEANADWVTVICCA----------D------INTAKGALDVAKE-FNGDVQIELTGYWTWE-- 120 (216)
T ss_dssp EEEC-SCHHHHHH--HHHHTTCSEEEEETTS----------C------HHHHHHHHHHHHH-TTCEEEEEECSCCCHH--
T ss_pred EEec-ccHHHHHH--HHHhCCCCEEEEeccC----------C------HHHHHHHHHHHHH-cCCCceeeeeeCCChh--
Confidence 5555 35777766 3456799999999531 1 2335566666665 3777766652133312
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
-++.+++.|.+.+.+|--......+..| ..+.++.+++.. ++||++.|||+ ++.+.++++. |+|+|.+||++
T Consensus 121 --~~~~l~~~~~~~~vl~~a~~~~~~G~~g--~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~~a-Gad~ivvG~~I 194 (216)
T 1q6o_A 121 --QAQQWRDAGIGQVVYHRSRDAQAAGVAW--GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGI-PIHVFIAGRSI 194 (216)
T ss_dssp --HHHHHHHTTCCEEEEECCHHHHHTTCCC--CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTS-CCSEEEESHHH
T ss_pred --hHHHHHhcCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHHHc-CCCEEEEeehh
Confidence 2344556688777775422211122222 246677777665 68899999998 7888888875 99999999999
Q ss_pred hhCCc
Q 013813 320 LENPA 324 (436)
Q Consensus 320 l~nP~ 324 (436)
+..++
T Consensus 195 ~~a~d 199 (216)
T 1q6o_A 195 RDAAS 199 (216)
T ss_dssp HTSSC
T ss_pred cCCCC
Confidence 87554
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.016 Score=56.57 Aligned_cols=206 Identities=10% Similarity=0.049 Sum_probs=126.4
Q ss_pred HHHHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc--ccc--hhhccChhh-hhhhh-----hccCCCCCEEE
Q 013813 93 AWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM--LHS--RIFTESEKY-RNEEF-----ATCKEDRPLFV 162 (436)
Q Consensus 93 ~~~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem--isa--~~l~~~~~~-~~~~~-----~~~~~e~pliv 162 (436)
+-.|++.+.++..+. |.++=|..+-+++.+.|.+.+|+-- ++. .++...... ....+ -..-.+.|+++
T Consensus 10 ~~~lr~l~~~~~~i~--~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~Pvia 87 (287)
T 3b8i_A 10 RAMFRALLDSSRCYH--TASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIA 87 (287)
T ss_dssp HHHHHHHHHSSCCEE--CEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEE
T ss_pred HHHHHHHHhCCCcEE--EecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 344666554433333 6688899999999999999877552 221 121111100 00000 01134578887
Q ss_pred Ee---cCCCHHHHHHHHHH-HcCCCcEEEEecCC-CchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC-
Q 013813 163 QF---CANDPEILLNAARR-VEPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF- 235 (436)
Q Consensus 163 QL---~g~d~e~~~~AA~~-v~~g~D~IdLN~GC-P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg- 235 (436)
=+ +| +++...+.++. ++.|+++|.|--+. |.++ |+.++. +-..+...+-|++++++- +.++.|--|..
T Consensus 88 D~d~Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~pKrc---gh~~gk-l~~~~e~~~~I~aa~~a~~~~~~~i~aRtda 162 (287)
T 3b8i_A 88 DADHGYG-NALNVMRTVVELERAGIAALTIEDTLLPAQF---GRKSTD-LICVEEGVGKIRAALEARVDPALTIIARTNA 162 (287)
T ss_dssp ECTTCSS-SHHHHHHHHHHHHHHTCSEEEEECBCCSCCT---TTCTTC-BCCHHHHHHHHHHHHHHCCSTTSEEEEEEET
T ss_pred ECCCCCC-CHHHHHHHHHHHHHhCCeEEEEcCCCCcccc---CCCCCC-ccCHHHHHHHHHHHHHcCCCCCcEEEEechh
Confidence 65 35 88888888865 45699999998764 3222 333344 455666666666665543 33444444442
Q ss_pred --CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc-cC---CCCHHHHHHHHHhcC
Q 013813 236 --PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-GN---VRHMEDVQKCLEETG 309 (436)
Q Consensus 236 --~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian-GG---I~s~eda~~~l~~tG 309 (436)
...+++++=++.++++|+|.|.+++.. +.+.++++.+.+++|++.. || ..+.+++ -+ -|
T Consensus 163 a~~gl~~ai~Ra~ay~eAGAd~i~~e~~~-----------~~~~~~~i~~~~~~P~ii~~~g~~~~~~~~eL---~~-lG 227 (287)
T 3b8i_A 163 ELIDVDAVIQRTLAYQEAGADGICLVGVR-----------DFAHLEAIAEHLHIPLMLVTYGNPQLRDDARL---AR-LG 227 (287)
T ss_dssp TTSCHHHHHHHHHHHHHTTCSEEEEECCC-----------SHHHHHHHHTTCCSCEEEECTTCGGGCCHHHH---HH-TT
T ss_pred hhcCHHHHHHHHHHHHHcCCCEEEecCCC-----------CHHHHHHHHHhCCCCEEEeCCCCCCCCCHHHH---HH-cC
Confidence 234678888999999999999998642 3467899999999998832 33 4454433 33 49
Q ss_pred cceeeeehHHh
Q 013813 310 CEGVLSAESLL 320 (436)
Q Consensus 310 aDgVmIGRgal 320 (436)
+..|..|-.++
T Consensus 228 v~~v~~~~~~~ 238 (287)
T 3b8i_A 228 VRVVVNGHAAY 238 (287)
T ss_dssp EEEEECCCHHH
T ss_pred CcEEEEChHHH
Confidence 99998886543
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0016 Score=68.20 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+..+.++.+.++|+|.|.++..... ....++.++++++.. ++||++ |+|.+.++++.+.+. |||+|.+|
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~a-GaD~I~vg 298 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHGH------SKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEA-GADAVKVG 298 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCCS------BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHT-TCSEEEEC
T ss_pred cchHHHHHHHhhcccceEEecccCCc------chhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHc-CCCEEEEC
Confidence 45667788899999999999754321 123468899999887 788887 889999999998886 99999986
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0036 Score=63.53 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=95.0
Q ss_pred CEEEEec-CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 159 PLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 159 plivQL~-g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
|+...++ +.+++++.+.++ .++.|+..+-+..| | ..+ .+.++++++.+ ++.+.+...-+
T Consensus 151 ~~~~~~g~~~~~e~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d----~~~v~avr~a~~~~~l~vDaN~~ 212 (393)
T 1wuf_A 151 KVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIA-P-------------NKD----IQFVEAVRKSFPKLSLMADANSA 212 (393)
T ss_dssp EBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECB-T-------------TBS----HHHHHHHHTTCTTSEEEEECTTC
T ss_pred eeeEEeCCCCCHHHHHHHHHHHHHHhhHhheeccC-h-------------HHH----HHHHHHHHHHcCCCEEEEECCCC
Confidence 3334444 346888877764 55679999999764 1 112 34467777766 45666666667
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++ ++++.+++.++.+|- ++. .+-||+..+++++.+++||.+.-.+.+.++++++++...+|.|++
T Consensus 213 ~~~~~a-~~~~~l~~~~i~~iE------qP~----~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~i 281 (393)
T 1wuf_A 213 YNREDF-LLLKELDQYDLEMIE------QPF----GTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINL 281 (393)
T ss_dssp CCGGGH-HHHHTTGGGTCSEEE------CCS----CSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCHHHH-HHHHHHHhCCCeEEE------CCC----CCcCHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEe
Confidence 888888 899999999988873 211 134788899999999999999999999999999999867898876
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0015 Score=60.91 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=81.6
Q ss_pred CCCEE--EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DRPLF--VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~pli--vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.|++ +-++ ..++.+.+. .++.|+|+|-++...+ .+.+.++++.+++. ++.+.+.+ +
T Consensus 59 ~~~i~ld~~l~-d~p~~~~~~--~~~aGad~i~vh~~~~----------------~~~~~~~~~~~~~~-g~~~~~d~-l 117 (218)
T 3jr2_A 59 NHILVCDMKTT-DGGAILSRM--AFEAGADWITVSAAAH----------------IATIAACKKVADEL-NGEIQIEI-Y 117 (218)
T ss_dssp TSEEEEEEEEC-SCHHHHHHH--HHHHTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEEC-C
T ss_pred CCcEEEEEeec-ccHHHHHHH--HHhcCCCEEEEecCCC----------------HHHHHHHHHHHHHh-CCccceee-e
Confidence 44554 4555 346665533 3456999999995321 23456677776643 55554422 3
Q ss_pred CC-ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 235 FP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 235 g~-~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+. +.+ -++.+.+.|+|++.++-.+..+..+. ...-+.++++++. .++||++.|||+ ++.+.++++. |||
T Consensus 118 ~~~T~~----~~~~~~~~g~d~v~~~~~~~~~~~g~--~~~~~~l~~i~~~~~~~~pi~v~GGI~-~~~~~~~~~a-GAd 189 (218)
T 3jr2_A 118 GNWTMQ----DAKAWVDLGITQAIYHRSRDAELAGI--GWTTDDLDKMRQLSALGIELSITGGIV-PEDIYLFEGI-KTK 189 (218)
T ss_dssp SSCCHH----HHHHHHHTTCCEEEEECCHHHHHHTC--CSCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTS-CEE
T ss_pred ecCCHH----HHHHHHHcCccceeeeeccccccCCC--cCCHHHHHHHHHHhCCCCCEEEECCCC-HHHHHHHHHc-CCC
Confidence 32 222 23445566999987642221111111 1122334445443 489999999994 8999888875 999
Q ss_pred eeeeehHHhhC
Q 013813 312 GVLSAESLLEN 322 (436)
Q Consensus 312 gVmIGRgal~n 322 (436)
+|.+||++...
T Consensus 190 ~vvvGsaI~~a 200 (218)
T 3jr2_A 190 TFIAGRALAGA 200 (218)
T ss_dssp EEEESGGGSHH
T ss_pred EEEEchhhcCC
Confidence 99999987653
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0032 Score=62.04 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=80.4
Q ss_pred HHcCCCcEEEEe--cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec-----cCC--Ch-hhHHHHHHH
Q 013813 178 RVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-----VFP--NL-QDTIKYAKM 247 (436)
Q Consensus 178 ~v~~g~D~IdLN--~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR-----lg~--~~-~d~~~~ak~ 247 (436)
.++.|+|+|-+. ++.... . ....+.+.+++++++ ..++|+.+=+= ++. +. +...+.++.
T Consensus 117 a~~~GAdaV~vlv~~~~d~~---------~-~~~~~~i~~v~~~~~-~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~ 185 (304)
T 1to3_A 117 VKRDGAKALKLLVLWRSDED---------A-QQRLNMVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKE 185 (304)
T ss_dssp HHHTTCCEEEEEEEECTTSC---------H-HHHHHHHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEEcCCCcc---------H-HHHHHHHHHHHHHHH-HcCCcEEEEEECCCCccccCCChhHHHHHHHHH
Confidence 356699998854 331100 0 112244555555544 45889887652 121 11 334455888
Q ss_pred HHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh----CCCc-EEEccCCCCHH----HHHHHHHhcCcceeeeehH
Q 013813 248 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA----LRIP-VLANGNVRHME----DVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 248 le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~----~~iP-VianGGI~s~e----da~~~l~~tGaDgVmIGRg 318 (436)
+.+.|+|+|-+|.-.. . . .+|+.+.++.+. +++| |+..||+ +.+ .+..+++. |++||.+||+
T Consensus 186 a~~lGaD~iKv~~~~~-~---~---g~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~a-Ga~Gv~vGRa 256 (304)
T 1to3_A 186 LGDSGADLYKVEMPLY-G---K---GARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEA-GASGFLAGRA 256 (304)
T ss_dssp HTTSSCSEEEECCGGG-G---C---SCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHT-TCCEEEESHH
T ss_pred HHHcCCCEEEeCCCcC-C---C---CCHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHHc-CCeEEEEehH
Confidence 9999999998886322 1 1 156777776666 7999 9999999 453 46666765 9999999999
Q ss_pred HhhC
Q 013813 319 LLEN 322 (436)
Q Consensus 319 al~n 322 (436)
+...
T Consensus 257 I~q~ 260 (304)
T 1to3_A 257 VWSS 260 (304)
T ss_dssp HHGG
T ss_pred HhCc
Confidence 9876
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0029 Score=63.00 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC--ccEEEeccCcccccCCCCCccCHHHHHHHHhhCC
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 286 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG--~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~ 286 (436)
+++...+.++.+++ .+.|+++. ++.. .+..+.++.+.++| ++.|.++... + .....|+.++.+++.++
T Consensus 79 ~~~~~~~~i~~~~~-~g~~v~v~--~g~~-~~~~~~a~~~~~~g~~~~~i~i~~~~-----G-~~~~~~~~i~~lr~~~~ 148 (336)
T 1ypf_A 79 QPEKRISFIRDMQS-RGLIASIS--VGVK-EDEYEFVQQLAAEHLTPEYITIDIAH-----G-HSNAVINMIQHIKKHLP 148 (336)
T ss_dssp SGGGHHHHHHHHHH-TTCCCEEE--ECCS-HHHHHHHHHHHHTTCCCSEEEEECSS-----C-CSHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHh-cCCeEEEe--CCCC-HHHHHHHHHHHhcCCCCCEEEEECCC-----C-CcHHHHHHHHHHHHhCC
Confidence 44556666776654 36688887 4544 34456688889999 9998875421 1 11356899999999986
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.|++..|+|.+.++++.+.+. |||+|.++
T Consensus 149 ~~~vi~G~v~s~e~A~~a~~a-Gad~Ivvs 177 (336)
T 1ypf_A 149 ESFVIAGNVGTPEAVRELENA-GADATKVG 177 (336)
T ss_dssp TSEEEEEEECSHHHHHHHHHH-TCSEEEEC
T ss_pred CCEEEECCcCCHHHHHHHHHc-CCCEEEEe
Confidence 555556779999999999986 99999993
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0014 Score=60.43 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
..-.+.+++...|++-+-+. .. -+.++++++.+++|||+.|+|++.+|+.++++. ||++|..+...|+
T Consensus 117 ~~~~~~i~~~~PD~iEiLPG----------i~-p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~a-GA~aVsTs~~~LW 184 (192)
T 3kts_A 117 NKGVALIQKVQPDCIELLPG----------II-PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIAS-GAIAVTTSNKHLW 184 (192)
T ss_dssp HHHHHHHHHHCCSEEEEECT----------TC-HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTT-TEEEEEECCGGGG
T ss_pred HHHHHHHhhcCCCEEEECCc----------hh-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHc-CCeEEEeCCHHHh
Confidence 34456667777888855422 22 278999999999999999999999999999997 9999999987766
Q ss_pred CC
Q 013813 322 NP 323 (436)
Q Consensus 322 nP 323 (436)
+-
T Consensus 185 ~~ 186 (192)
T 3kts_A 185 EG 186 (192)
T ss_dssp TT
T ss_pred Cc
Confidence 53
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0026 Score=64.21 Aligned_cols=95 Identities=23% Similarity=0.327 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
+++...+.++.+++...+||.+-+-... .+.++.+.++|+|.|+|+.-.. .+ ...++.++++++..++|
T Consensus 79 s~e~~~~~I~~vk~~~~~pvga~ig~~~-----~e~a~~l~eaGad~I~ld~a~G-----~~-~~~~~~i~~i~~~~~~~ 147 (361)
T 3khj_A 79 DMESQVNEVLKVKNSGGLRVGAAIGVNE-----IERAKLLVEAGVDVIVLDSAHG-----HS-LNIIRTLKEIKSKMNID 147 (361)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECTTC-----HHHHHHHHHTTCSEEEECCSCC-----SB-HHHHHHHHHHHHHCCCE
T ss_pred CHHHHHHHHHHHHhccCceEEEEeCCCH-----HHHHHHHHHcCcCeEEEeCCCC-----Cc-HHHHHHHHHHHHhcCCc
Confidence 5677888889998877889888864322 5678889999999998863221 10 12246788888888999
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
|++ |++.+.++++.+.+. |+|+|.+|
T Consensus 148 Viv-g~v~t~e~A~~l~~a-GaD~I~VG 173 (361)
T 3khj_A 148 VIV-GNVVTEEATKELIEN-GADGIKVG 173 (361)
T ss_dssp EEE-EEECSHHHHHHHHHT-TCSEEEEC
T ss_pred EEE-ccCCCHHHHHHHHHc-CcCEEEEe
Confidence 987 678999999998876 99999996
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0064 Score=61.76 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=97.0
Q ss_pred CEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~ 236 (436)
|+...+...+++++++.++ .++.|+..|-|..|.. .+..+ .+.++++++.+ +..+.|...-++
T Consensus 135 ~~~~t~~~~~~e~~~~~a~~~~~~G~~~iKlKvg~~-----------~~~~d----~~~v~avR~~~~~~~L~vDaN~~w 199 (389)
T 3s5s_A 135 TTDITITTGSPERAEEAARRAAAMGFRALKVKVGGR-----------LAASD----PARIEAIHAAAPGASLILDGNGGL 199 (389)
T ss_dssp ECCEEECSSCSHHHHHHHHHHHHHTCCEEEEECCGG-----------GTTTH----HHHHHHHHHHCTTCEEEEECTTCS
T ss_pred EEEeeecCCCHHHHHHHHHHHHHcCCCeEEEEecCC-----------ChHHH----HHHHHHHHHhCCCCeEEEECCCCC
Confidence 3445667778888887775 4567999999987531 12233 34455566555 456666666688
Q ss_pred ChhhHHHHHHHH--HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 237 NLQDTIKYAKML--EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 ~~~d~~~~ak~l--e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+.++++++++.+ ++.++.+| ++... +-|++..+++++.+++||.+.=.+.+..++.++++...+|.|+
T Consensus 200 ~~~~A~~~~~~L~~~~~~i~~i-------EeP~~---~~d~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~ 269 (389)
T 3s5s_A 200 TAGEALALVAHARRLGADVALL-------EQPVP---RDDWDGMKEVTRRAGVDVAADESAASAEDVLRVAAERAATVVN 269 (389)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE-------ECCSC---TTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHTTCCSEEE
T ss_pred CHHHHHHHHHHHhhCCCCeEEE-------ECCCC---cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEE
Confidence 999999999999 65655554 22111 3478999999999999999999999999999999987899887
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 270 ~k 271 (389)
T 3s5s_A 270 IK 271 (389)
T ss_dssp EC
T ss_pred ec
Confidence 63
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.052 Score=53.07 Aligned_cols=207 Identities=10% Similarity=0.077 Sum_probs=121.6
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc--ccc-hhhccChhhh-hhhh-----hccCCCCCEEEEec
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM--LHS-RIFTESEKYR-NEEF-----ATCKEDRPLFVQFC 165 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem--isa-~~l~~~~~~~-~~~~-----~~~~~e~plivQL~ 165 (436)
.||+.+.++..+. |.++=|..+-+++.+.|.+.+|+-- ++. .++....... ...+ -..-.+.|+++=+=
T Consensus 6 ~lr~l~~~~~~i~--~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d 83 (290)
T 2hjp_A 6 ALRAALDSGRLFT--AMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADID 83 (290)
T ss_dssp HHHHHHHHCCCEE--EEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECT
T ss_pred HHHHHHhCCCcEE--EecCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3565543332233 5678889999999999999988662 221 1211111100 0000 01134578876542
Q ss_pred ---CCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCccc--ccccCChHHHHHHHHHHhcc-cCccEEEEeccC---
Q 013813 166 ---ANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYG--AFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVF--- 235 (436)
Q Consensus 166 ---g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~G--s~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRlg--- 235 (436)
| +++...+.++. ++.|+.+|.|--+.-. .+.++.| +.-+-..+...+-|++++++ ...++.|--|..
T Consensus 84 ~Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~~--k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~ 160 (290)
T 2hjp_A 84 TGFG-NAVNVHYVVPQYEAAGASAIVMEDKTFP--KDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALI 160 (290)
T ss_dssp TTTS-SHHHHHHHHHHHHHHTCSEEEEECBCSS--CCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTT
T ss_pred CCCC-CHHHHHHHHHHHHHhCCeEEEEcCCCCC--ccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhh
Confidence 4 78888888865 4569999999876421 1223333 33233344434444444433 223444444443
Q ss_pred --CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEcc---CCCCHHHHHHHHHhc
Q 013813 236 --PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANG---NVRHMEDVQKCLEET 308 (436)
Q Consensus 236 --~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianG---GI~s~eda~~~l~~t 308 (436)
...+++++=++.++++|+|.|.++++.. +.+.++++.+.++ +|+++|- ...+.+ + |.+-
T Consensus 161 a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~----------~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~---e-L~~l 226 (290)
T 2hjp_A 161 AGLGQQEAVRRGQAYEEAGADAILIHSRQK----------TPDEILAFVKSWPGKVPLVLVPTAYPQLTEA---D-IAAL 226 (290)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEECCCCS----------SSHHHHHHHHHCCCSSCEEECGGGCTTSCHH---H-HHTC
T ss_pred ccccHHHHHHHHHHHHHcCCcEEEeCCCCC----------CHHHHHHHHHHcCCCCCEEEeccCCCCCCHH---H-HHhc
Confidence 2367888889999999999999998542 2356788988888 9999873 244443 3 3345
Q ss_pred C-cceeeeehHHh
Q 013813 309 G-CEGVLSAESLL 320 (436)
Q Consensus 309 G-aDgVmIGRgal 320 (436)
| +..|.+|-.++
T Consensus 227 G~v~~v~~~~~~~ 239 (290)
T 2hjp_A 227 SKVGIVIYGNHAI 239 (290)
T ss_dssp TTEEEEEECSHHH
T ss_pred CCeeEEEechHHH
Confidence 8 99999986654
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.013 Score=58.86 Aligned_cols=115 Identities=11% Similarity=0.092 Sum_probs=90.4
Q ss_pred HHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcC
Q 013813 175 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAG 252 (436)
Q Consensus 175 AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG 252 (436)
+.+.++.||..+-+..|- +++.-.+.++++++.+ ++.+.|-..-+|+.++++++++.+++.|
T Consensus 152 ~~~~~~~Gf~~~K~k~g~----------------~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~ 215 (378)
T 4hpn_A 152 MAERRAEGFHACKIKIGF----------------GVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFG 215 (378)
T ss_dssp HHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHhccceecccccC----------------ChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhcc
Confidence 334567799999887652 2444556777787776 5777788777899999999999999999
Q ss_pred ccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 253 CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 253 ~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.+| ++... +-|++..+++++.+++||.+.-.+.+..++.++++...+|.|++
T Consensus 216 i~~i-------EeP~~---~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~ 268 (378)
T 4hpn_A 216 IDWF-------EEPVV---PEQLDAYARVRAGQPIPVAGGETWHGRYGMWQALSAGAVDILQP 268 (378)
T ss_dssp CSCE-------ECCSC---TTCHHHHHHHHHHSSSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred cchh-------hcCCC---ccchhhhHHHHhhCCceeeCCcCccchHhHHHHHHcCCCCEEee
Confidence 8776 22111 35789999999999999999999999999999999878888854
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.042 Score=53.83 Aligned_cols=207 Identities=14% Similarity=0.064 Sum_probs=119.3
Q ss_pred HHHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc--ccc-hhhccChhhh-h------hhhhccCCCCCEEEE
Q 013813 94 WAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM--LHS-RIFTESEKYR-N------EEFATCKEDRPLFVQ 163 (436)
Q Consensus 94 ~~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem--isa-~~l~~~~~~~-~------~~~~~~~~e~plivQ 163 (436)
-.||+.+.++..+. |.++=|..+-+++.+.|.+.+|+-- ++. .++-...... . ..+ ....+.|+++=
T Consensus 9 ~~lr~l~~~~~~i~--~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I-~~~~~~PviaD 85 (295)
T 1s2w_A 9 TQLKQMLNSKDLEF--IMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFM-SDASDVPILLD 85 (295)
T ss_dssp HHHHHHHHSSSCEE--EEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHH-HHTCSSCEEEE
T ss_pred HHHHHHHhCCCcEE--EecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHH-HhcCCCCEEec
Confidence 34666554433333 5678899999999999999888662 221 1111100000 0 001 11345788876
Q ss_pred e---cCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCccc---ccccCChHHHHHHHHHHhcccCccEEEEeccC-
Q 013813 164 F---CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYG---AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF- 235 (436)
Q Consensus 164 L---~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~G---s~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg- 235 (436)
+ +| +++...+.++ +++.|+.+|.|--+...+ +.++.| ..|....+.+..|-.++....+.++.|--|..
T Consensus 86 ~d~Gyg-~~~~v~~~v~~l~~aGaagv~iED~~~~k--~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda 162 (295)
T 1s2w_A 86 ADTGYG-NFNNARRLVRKLEDRGVAGACLEDKLFPK--TNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEA 162 (295)
T ss_dssp CCSSCS-SHHHHHHHHHHHHHTTCCEEEEECBCC----------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECT
T ss_pred CCCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCCCc--cccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehH
Confidence 5 24 5666777775 456799999998764211 223333 23433333344443333333344455554543
Q ss_pred ----CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEccC---CCCHHHHHHHHH
Q 013813 236 ----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGN---VRHMEDVQKCLE 306 (436)
Q Consensus 236 ----~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianGG---I~s~eda~~~l~ 306 (436)
...+++++=++.++++|+|.|.+++.. .+.+.++++.+.++ +|+++|-+ -.+ +.++-+
T Consensus 163 ~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~----------~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~---~~eL~~ 229 (295)
T 1s2w_A 163 FIAGWGLDEALKRAEAYRNAGADAILMHSKK----------ADPSDIEAFMKAWNNQGPVVIVPTKYYKTP---TDHFRD 229 (295)
T ss_dssp TTTTCCHHHHHHHHHHHHHTTCSEEEECCCS----------SSSHHHHHHHHHHTTCSCEEECCSTTTTSC---HHHHHH
T ss_pred HhccccHHHHHHHHHHHHHcCCCEEEEcCCC----------CCHHHHHHHHHHcCCCCCEEEeCCCCCCCC---HHHHHH
Confidence 235788888999999999999998632 22366788888877 99999843 344 444334
Q ss_pred hcCcceeeeehHHh
Q 013813 307 ETGCEGVLSAESLL 320 (436)
Q Consensus 307 ~tGaDgVmIGRgal 320 (436)
-|+..|.+|-.++
T Consensus 230 -lGv~~v~~~~~~~ 242 (295)
T 1s2w_A 230 -MGVSMVIWANHNL 242 (295)
T ss_dssp -HTCCEEEECSHHH
T ss_pred -cCCcEEEEChHHH
Confidence 4999999986544
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0096 Score=60.54 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=97.7
Q ss_pred CEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~ 236 (436)
|+...+...+++++++.++ .++.||..|-+..|.+.... .-...++.-.+.|+++++.+ ++.+.|-..-+|
T Consensus 156 ~~~~t~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~-------~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~w 228 (393)
T 3u9i_A 156 ETDVTITTGSVTAAARAAQAIVARGVTTIKIKIGAGDPDA-------TTIRTMEHDLARIVAIRDVAPTARLILDGNCGY 228 (393)
T ss_dssp ECCEEEC---CHHHHHHHHHHHTTTCCEEEEECC--------------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSCC
T ss_pred EEEEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCCcccc-------cccccHHHHHHHHHHHHHHCCCCeEEEEccCCC
Confidence 3445566778888887775 56779999999987543110 00012444556677777766 456666666688
Q ss_pred ChhhHHHHHHHH--HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 237 NLQDTIKYAKML--EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 ~~~d~~~~ak~l--e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+.++++++++.+ ++.++.+| ++... +-|++..+++++.+++||.+.=.+.+..++.++++...+|.|+
T Consensus 229 ~~~~A~~~~~~L~~~~~~i~~i-------EeP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i~ 298 (393)
T 3u9i_A 229 TAPDALRLLDMLGVHGIVPALF-------EQPVA---KDDEEGLRRLTATRRVPVAADESVASATDAARLARNAAVDVLN 298 (393)
T ss_dssp CHHHHHHHHHTTTTTTCCCSEE-------ECCSC---TTCTTHHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred CHHHHHHHHHHHhhCCCCeEEE-------ECCCC---CCcHHHHHHHHhhCCCcEEeCCcCCCHHHHHHHHHcCCCCEEE
Confidence 999999999999 77777766 22111 2367888999999999999999999999999999987889887
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 299 ~k 300 (393)
T 3u9i_A 299 IK 300 (393)
T ss_dssp EC
T ss_pred ec
Confidence 64
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.018 Score=57.62 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=97.9
Q ss_pred EEEEecC-CCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC
Q 013813 160 LFVQFCA-NDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 235 (436)
Q Consensus 160 livQL~g-~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg 235 (436)
+...+.+ ..++.+.++++.++ .|+..+-+..|- .+++.-.+.++++++.+ ++.+.|-..-+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~l~vDaN~~ 198 (370)
T 2chr_A 134 IAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGF---------------RSPQDDLIHMEALSNSLGSKAYLRVDVNQA 198 (370)
T ss_dssp BEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSS---------------SCHHHHHHHHHHHHHHTTTTSEEEEECTTC
T ss_pred eeeeeccCchhhhHHHHHHHHhhcccceeeccccc---------------CChHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 3334444 45666777777665 478888887652 13444455667777766 46677777778
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
|+.+++..+++.+++.++.+| ++... +-|++..+++++.+++||.+.=.+.+..++.++++...+|.|++
T Consensus 199 ~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~~ 268 (370)
T 2chr_A 199 WDEQVASVYIPELEALGVELI-------EQPVG---RENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSL 268 (370)
T ss_dssp CCTHHHHHHHHHHHTTTCCEE-------ECCSC---SSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSEECC
T ss_pred CCHHHHHHHHHHHHhcCCcee-------cCCCC---hhhhhhhhHHhhhccCCccCCccCCCHHHHHHHHHcCCCcEEEe
Confidence 999999999999999998876 22111 34789999999999999999999999999999998877888764
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.015 Score=56.47 Aligned_cols=199 Identities=18% Similarity=0.153 Sum_probs=126.9
Q ss_pred HHHHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc--ccc-hhhccChhhh-h------hhhhccCCCCCEEE
Q 013813 93 AWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM--LHS-RIFTESEKYR-N------EEFATCKEDRPLFV 162 (436)
Q Consensus 93 ~~~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem--isa-~~l~~~~~~~-~------~~~~~~~~e~pliv 162 (436)
+-.||+.+.. . +. |.++=|..+-+++.+.|.+.+|+-- ++. .++....... . ..+.. -.+.|+++
T Consensus 7 ~~~lr~l~~~-~-i~--~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~-~~~~pvia 81 (275)
T 2ze3_A 7 ARSFHALHQT-G-FL--LPNAWDVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVR-AVAIPVNA 81 (275)
T ss_dssp HHHHHHHHHH-C-EE--ECEESSHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHH-HCSSCEEE
T ss_pred HHHHHHHhhC-C-ee--EecccCHHHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHh-hcCCCEEe
Confidence 3446655433 3 33 6688899999999999999888662 221 1111110000 0 00111 12368887
Q ss_pred Ee---cCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc---CccEEEEeccC
Q 013813 163 QF---CANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKIRVF 235 (436)
Q Consensus 163 QL---~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~---~iPVsVKiRlg 235 (436)
=+ +|.+++...+.++. ++.|+.+|.|--+... -|..| -..+...+-|++++++. ++|+.|--|..
T Consensus 82 D~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~~-------~~k~l-~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtd 153 (275)
T 2ze3_A 82 DIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATGL-------TPTEL-YDLDSQLRRIEAARAAIDASGVPVFLNARTD 153 (275)
T ss_dssp ECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCSS-------SSSCB-CCHHHHHHHHHHHHHHHHHHTSCCEEEEECC
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcCC-------CCCcc-CCHHHHHHHHHHHHHhHhhcCCCeEEEEech
Confidence 65 45578888888854 5679999999876531 12333 35555566666665552 68888877764
Q ss_pred C-----------ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CCCCHHHHH
Q 013813 236 P-----------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQ 302 (436)
Q Consensus 236 ~-----------~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI~s~eda~ 302 (436)
. ..+++++=++.++++|+|.|.+++.. +.+.++++.+.+++|+..++ +..+.+
T Consensus 154 a~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~~-----------~~~~~~~i~~~~~~P~n~~~~~~~~~~~--- 219 (275)
T 2ze3_A 154 TFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLAL-----------QSQDIRALADALRVPLNVMAFPGSPVPR--- 219 (275)
T ss_dssp TTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTCC-----------CHHHHHHHHHHCSSCEEEECCTTSCCHH---
T ss_pred hhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCCC-----------CHHHHHHHHHhcCCCEEEecCCCCCCHH---
Confidence 2 24677778889999999999998742 34678899999999987764 355553
Q ss_pred HHHHhcCcceeeeehHH
Q 013813 303 KCLEETGCEGVLSAESL 319 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRga 319 (436)
++-+ -|+..|.+|-.+
T Consensus 220 eL~~-lGv~~v~~~~~~ 235 (275)
T 2ze3_A 220 ALLD-AGAARVSFGQSL 235 (275)
T ss_dssp HHHH-TTCSEEECTTHH
T ss_pred HHHH-cCCcEEEEChHH
Confidence 3333 599999888543
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0076 Score=56.29 Aligned_cols=150 Identities=13% Similarity=0.118 Sum_probs=94.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCch--hhh--c-------CcccccccCChHHHHHHHHHH----
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR--IAR--R-------GNYGAFLMDNLPLVKSLVEKL---- 220 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~--~~~--~-------~~~Gs~Ll~~p~~v~eIv~av---- 220 (436)
+.|++.=|-+.+++++.+.++.+ +.|++.|++-+-.|.. ..+ + -++|. + -+.+.+...+++=
T Consensus 15 ~~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagt-v-i~~d~~~~A~~aGAd~v 92 (214)
T 1wbh_A 15 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGT-V-LNPQQLAEVTEAGAQFA 92 (214)
T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEES-C-CSHHHHHHHHHHTCSCE
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCE-E-EEHHHHHHHHHcCCCEE
Confidence 47888889999999888888654 5689999998644321 111 1 12233 2 2334444333321
Q ss_pred ------------hcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CC
Q 013813 221 ------------ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 287 (436)
Q Consensus 221 ------------~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~i 287 (436)
++..++++...+. +.. + +..+.+.|+|+|-+|.-. .. + -.++++.++..+ ++
T Consensus 93 ~~p~~d~~v~~~~~~~g~~~i~G~~---t~~---e-~~~A~~~Gad~v~~Fpa~---~~---g--G~~~lk~i~~~~~~i 157 (214)
T 1wbh_A 93 ISPGLTEPLLKAATEGTIPLIPGIS---TVS---E-LMLGMDYGLKEFKFFPAE---AN---G--GVKALQAIAGPFSQV 157 (214)
T ss_dssp EESSCCHHHHHHHHHSSSCEEEEES---SHH---H-HHHHHHTTCCEEEETTTT---TT---T--HHHHHHHHHTTCTTC
T ss_pred EcCCCCHHHHHHHHHhCCCEEEecC---CHH---H-HHHHHHCCCCEEEEecCc---cc---c--CHHHHHHHhhhCCCC
Confidence 1112344443311 122 2 345667899999886611 00 1 157889999887 89
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
||++.|||+ .+.+.++++..|+++|. |+++...+.+
T Consensus 158 pvvaiGGI~-~~n~~~~l~agg~~~v~-gS~i~~~~~~ 193 (214)
T 1wbh_A 158 RFCPTGGIS-PANYRDYLALKSVLCIG-GSWLVPADAL 193 (214)
T ss_dssp EEEEBSSCC-TTTHHHHHTSTTBSCEE-EGGGSCHHHH
T ss_pred eEEEECCCC-HHHHHHHHhcCCCeEEE-eccccChhhh
Confidence 999999996 68999999866999999 9877665544
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.025 Score=52.06 Aligned_cols=129 Identities=9% Similarity=0.085 Sum_probs=82.0
Q ss_pred CEEEEec--CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 159 PLFVQFC--ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~--g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
++=+-++ ++.++.+.+.+ ++.|+|.|-+|.-. | .+ +++.+++.. -|++...+..
T Consensus 55 ~~D~kl~DI~~t~~~~v~~~--~~~Gad~vtvh~~~----------g------~~----~i~~~~~~~--gv~vl~~t~~ 110 (208)
T 2czd_A 55 IADLKLADIPNTNRLIARKV--FGAGADYVIVHTFV----------G------RD----SVMAVKELG--EIIMVVEMSH 110 (208)
T ss_dssp EEEEEECSCHHHHHHHHHHH--HHTTCSEEEEESTT----------C------HH----HHHHHHTTS--EEEEECCCCS
T ss_pred EEEeeeCchHHHHHHHHHHH--HhcCCCEEEEeccC----------C------HH----HHHHHHHhC--CcEEEEecCC
Confidence 3446677 66665544433 45799999999532 1 11 244444443 3334333321
Q ss_pred C------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCH-HHHHHHHHhc
Q 013813 237 N------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHM-EDVQKCLEET 308 (436)
Q Consensus 237 ~------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~-eda~~~l~~t 308 (436)
. .+....++++..+.|++++.+.+.. .+.++.+++..+ -+++..|||+.- .++.++++.
T Consensus 111 ~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~~------------~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~a- 177 (208)
T 2czd_A 111 PGALEFINPLTDRFIEVANEIEPFGVIAPGTR------------PERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKA- 177 (208)
T ss_dssp GGGGTTTGGGHHHHHHHHHHHCCSEEECCCSS------------THHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHH-
T ss_pred cchhhHHHHHHHHHHHHHHHhCCcEEEECCCC------------hHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHc-
Confidence 1 2334566788889999988654321 245677777665 367799999862 378888876
Q ss_pred CcceeeeehHHhhCCc
Q 013813 309 GCEGVLSAESLLENPA 324 (436)
Q Consensus 309 GaDgVmIGRgal~nP~ 324 (436)
|+|++.+||+++..+.
T Consensus 178 Gad~vvvGr~I~~a~d 193 (208)
T 2czd_A 178 GADYIIVGRAIYNAPN 193 (208)
T ss_dssp TCSEEEECHHHHTSSS
T ss_pred CCCEEEEChHHhcCCC
Confidence 9999999999987654
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0033 Score=57.72 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=68.8
Q ss_pred HHHHHHHHhcccCccEEEEecc--CCC-hhhHHHHHHHHHHcCccEEEecc-------Cc----cccc------------
Q 013813 213 VKSLVEKLALNLNVPVSCKIRV--FPN-LQDTIKYAKMLEDAGCSLLAVHG-------RT----RDEK------------ 266 (436)
Q Consensus 213 v~eIv~av~~~~~iPVsVKiRl--g~~-~~d~~~~ak~le~aG~d~I~VHg-------Rt----~~~~------------ 266 (436)
+.++++.++++ ++||.|=+-+ |.. .++.++|. +..++++|+=+- +. .-++
T Consensus 45 L~~iv~~ik~~-gK~vivh~DlI~GLs~d~~ai~fL---~~~~pdGIIsTk~~~i~~Akk~GL~tIqR~FliDs~al~~~ 120 (188)
T 1vkf_A 45 LKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFV---KKAGADGIITIKPKNYVVAKKNGIPAVLRFFALDSKAVERG 120 (188)
T ss_dssp HHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHH---HHHTCSEEEESCHHHHHHHHHTTCCEEEEEECCSHHHHHHH
T ss_pred HHHHHHHHHHC-CCeEEEecCcccccCCCHHHHHHH---HhcCCCEEEcCcHHHHHHHHHcCCEEeeEEEEEEeHHHhhh
Confidence 88999999888 9999998765 332 35666666 667777775310 00 0000
Q ss_pred ------------CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 267 ------------DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 267 ------------~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
.-.++.+--+.++++ +++|||+.|+|+|.+|+.+ ++. ||++|..|.--|++.
T Consensus 121 ~~~I~~~kPD~iEiLPg~v~p~~I~~v---~~~PiIaGGlI~t~edv~~-l~a-GA~aIsTs~~~LW~~ 184 (188)
T 1vkf_A 121 IEQIETLGVDVVEVLPGAVAPKVARKI---PGRTVIAAGLVETEEEARE-ILK-HVSAISTSSRILWKM 184 (188)
T ss_dssp HHHHHHHTCSEEEEESGGGHHHHHTTS---TTSEEEEESCCCSHHHHHH-HTT-TSSEEEECCHHHHTC
T ss_pred hhhccccCCCeEeecCCCchHHHHHHh---cCCCEEEECCcCCHHHHHH-HHC-CCeEEEeCCHHHhCC
Confidence 001122122444444 6889999999999999999 886 999999998776653
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.035 Score=54.98 Aligned_cols=124 Identities=8% Similarity=0.066 Sum_probs=92.9
Q ss_pred CCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
.+++++.+.+ +.++.|+..+-|..|. .+++.-.+.++++++.+ ++.+.|-..-+++.+++++
T Consensus 115 ~~~e~~~~~a~~~~~~G~~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~ 179 (332)
T 2ozt_A 115 GSGQAALEQWQQSWQRGQTTFKWKVGV---------------MSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANR 179 (332)
T ss_dssp CTGGGHHHHHHHHHHTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCcEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHH
Confidence 4666666555 5667899999988652 23455567778888876 3667777666788899999
Q ss_pred HHHHHHHc---CccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 244 YAKMLEDA---GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 244 ~ak~le~a---G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+++.+++. ++.+| ++... +-||+..+++++.+++||.+.=.+.+..++.++++...+|.+.+
T Consensus 180 ~~~~l~~~~~~~i~~i-------EqP~~---~~d~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~i 244 (332)
T 2ozt_A 180 WFAWLDRHGNGKIEYV-------EQPLP---PDQWQALLSLAQTVTTAIALDESVVSAAEVQRWVDRGWPGFFVI 244 (332)
T ss_dssp HHHHHHHHCCTTEEEE-------ECCSC---TTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHhhccCCccee-------ECCCC---CCCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 99999998 66655 22111 34788899999999999999999999999999999755676654
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0027 Score=64.02 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++..+.++.+.++|+|.|+++.-... . ..-|+.|+.+++.. ++||++ |+|.|+++++.+.+. |||+|.+|
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~a~G~-----~-~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~a-GaD~I~Vg 169 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDVAHAH-----A-KYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLASC-GADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCCS-----S-HHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHT-TCSEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCC-----c-HhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHHc-CCCEEEEc
Confidence 56678899999999999999632211 0 12378899999875 788887 679999999998886 99999985
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.042 Score=54.13 Aligned_cols=205 Identities=13% Similarity=0.100 Sum_probs=117.7
Q ss_pred HHHHHhCC-CcEEEccCCCCCcHHHHHHHHHhCCCeEEe-Cc-ccc--hhhccChh----h---hhhhhhccCC-CCCEE
Q 013813 95 AHWTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYT-PM-LHS--RIFTESEK----Y---RNEEFATCKE-DRPLF 161 (436)
Q Consensus 95 ~~~~~lg~-~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~T-em-isa--~~l~~~~~----~---~~~~~~~~~~-e~pli 161 (436)
.||+.+-+ .+.+. |.++=|..+-+++.+.|.+.+|+ .. ++. .++..... . ....+..... ..|++
T Consensus 15 ~lr~ll~~~~~~i~--~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~Pvi 92 (307)
T 3lye_A 15 KLRHLLENTDELIV--CPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLI 92 (307)
T ss_dssp HHHHHHHHCCCCEE--EEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEE
T ss_pred HHHHHHhCCCCeEE--EecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEE
Confidence 46665443 23333 44777888889999999998875 32 211 11111110 0 0011111112 47888
Q ss_pred EEe---cCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccc-cccCChHHHHHHHHHHhcc---cCccEEEEec
Q 013813 162 VQF---CANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGA-FLMDNLPLVKSLVEKLALN---LNVPVSCKIR 233 (436)
Q Consensus 162 vQL---~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs-~Ll~~p~~v~eIv~av~~~---~~iPVsVKiR 233 (436)
+=+ +| +++...+.++.+ +.|+.+|.|--....+ +.++.++ .|....+.+.+| ++.+++ .+.++.|--|
T Consensus 93 aD~d~Gyg-~~~~v~~~v~~l~~aGaagv~iEDq~~~k--~cgh~~gk~l~~~~e~~~rI-~Aa~~A~~~~~~d~~I~AR 168 (307)
T 3lye_A 93 ADMDTGYG-GPIMVARTVEHYIRSGVAGAHLEDQILTK--RCGHLSGKKVVSRDEYLVRI-RAAVATKRRLRSDFVLIAR 168 (307)
T ss_dssp EECTTCSS-SHHHHHHHHHHHHHTTCCEEEECCBCCCC----------CBCCHHHHHHHH-HHHHHHHHHTTCCCEEEEE
T ss_pred EECCCCCC-CHHHHHHHHHHHHHcCCeEEEEcCCCCCc--ccCCCCCCeecCHHHHHHHH-HHHHHHHHhcCCCeEEEEe
Confidence 765 34 588888888654 5699999998653211 1222333 344333434444 333332 3556666666
Q ss_pred cC----CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEc---cC---CCCHHHHH
Q 013813 234 VF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLAN---GN---VRHMEDVQ 302 (436)
Q Consensus 234 lg----~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVian---GG---I~s~eda~ 302 (436)
.. ...+++++=++...++|+|.|-+++.+ +.+.++++.+.++ +||.+| || ..+.+++.
T Consensus 169 TDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~~-----------~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~~eL~ 237 (307)
T 3lye_A 169 TDALQSLGYEECIERLRAARDEGADVGLLEGFR-----------SKEQAAAAVAALAPWPLLLNSVENGHSPLITVEEAK 237 (307)
T ss_dssp ECCHHHHCHHHHHHHHHHHHHTTCSEEEECCCS-----------CHHHHHHHHHHHTTSCBEEEEETTSSSCCCCHHHHH
T ss_pred chhhhccCHHHHHHHHHHHHHCCCCEEEecCCC-----------CHHHHHHHHHHccCCceeEEeecCCCCCCCCHHHHH
Confidence 63 245688888999999999999998753 2366788888764 888765 33 33444433
Q ss_pred HHHHhcCcceeeeehHHh
Q 013813 303 KCLEETGCEGVLSAESLL 320 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal 320 (436)
+ -|+..|..+-.++
T Consensus 238 ---~-lGv~~v~~~~~~~ 251 (307)
T 3lye_A 238 ---A-MGFRIMIFSFATL 251 (307)
T ss_dssp ---H-HTCSEEEEETTTH
T ss_pred ---H-cCCeEEEEChHHH
Confidence 3 4999998775443
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.035 Score=54.98 Aligned_cols=205 Identities=12% Similarity=0.071 Sum_probs=123.3
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc--cc--chhhccChhh-hh------hhhhccCCCCCEEEEe
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM--LH--SRIFTESEKY-RN------EEFATCKEDRPLFVQF 164 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem--is--a~~l~~~~~~-~~------~~~~~~~~e~plivQL 164 (436)
||+.+.+...+. |.++=|..+-+++.+.|.+.+|+-- ++ ..++-..... .. ..+...-.+.|+++=+
T Consensus 31 lr~l~~~~~~i~--~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~ 108 (318)
T 1zlp_A 31 MHRLIEEHGSVL--MPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDG 108 (318)
T ss_dssp HHHHHHHSSSEE--EEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEEC
T ss_pred HHHHHhCCCcEE--EecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeC
Confidence 554443322232 5678889998999999999888653 22 1111111000 00 0011112368888775
Q ss_pred ---cCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCC--
Q 013813 165 ---CANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN-- 237 (436)
Q Consensus 165 ---~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~-- 237 (436)
+| +++...+.++. ++.|+.+|.|--+...+ +.++.|+.-+-..+...+-|++++++. +.++.|--|....
T Consensus 109 d~Gyg-~~~~v~~tv~~l~~aGaagv~iED~~~~k--~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~ 185 (318)
T 1zlp_A 109 DTGGG-GPLNVQRFIRELISAGAKGVFLEDQVWPK--KCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAP 185 (318)
T ss_dssp TTCSS-SHHHHHHHHHHHHHTTCCEEEEECBCSSC--CCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCCCc--cccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhh
Confidence 35 78888888754 56799999998764211 223344333334444444444444432 3445555555322
Q ss_pred --hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc---c---CCCCHHHHHHHHHhcC
Q 013813 238 --LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---G---NVRHMEDVQKCLEETG 309 (436)
Q Consensus 238 --~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian---G---GI~s~eda~~~l~~tG 309 (436)
.+++++=++.++++|+|.|.+++.. +.+.++++.+.+++|+.+| | ...+.+++ -+ -|
T Consensus 186 ~gl~~ai~Ra~Ay~eAGAd~i~~e~~~-----------~~e~~~~i~~~l~~P~lan~~~~g~~~~~~~~eL---~~-lG 250 (318)
T 1zlp_A 186 HGLEEGIRRANLYKEAGADATFVEAPA-----------NVDELKEVSAKTKGLRIANMIEGGKTPLHTPEEF---KE-MG 250 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECCCC-----------SHHHHHHHHHHSCSEEEEEECTTSSSCCCCHHHH---HH-HT
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEcCCC-----------CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHH---HH-cC
Confidence 3577888899999999999998652 3467899999999999765 3 34454433 33 49
Q ss_pred cceeeeehHHh
Q 013813 310 CEGVLSAESLL 320 (436)
Q Consensus 310 aDgVmIGRgal 320 (436)
+..|.+|-.++
T Consensus 251 v~~v~~~~~~~ 261 (318)
T 1zlp_A 251 FHLIAHSLTAV 261 (318)
T ss_dssp CCEEEECSHHH
T ss_pred CeEEEEchHHH
Confidence 99999986654
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0037 Score=58.95 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=89.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCch--hhh--cC-------cccccccCChHHHHHHHHHH-----
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR--IAR--RG-------NYGAFLMDNLPLVKSLVEKL----- 220 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~--~~~--~~-------~~Gs~Ll~~p~~v~eIv~av----- 220 (436)
.+++.=+-+.+++++.+.++.+ +.|++.|++-+-.|.. ..+ +. ++|. ++ +.+.+...+++=
T Consensus 26 ~~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagt-vl-~~d~~~~A~~aGAd~v~ 103 (225)
T 1mxs_A 26 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGT-VL-DRSMFAAVEAAGAQFVV 103 (225)
T ss_dssp HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEEC-CC-SHHHHHHHHHHTCSSEE
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCe-Ee-eHHHHHHHHHCCCCEEE
Confidence 5677777788888887777644 5578888887543321 011 11 1233 22 334444333321
Q ss_pred -----------hcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCc
Q 013813 221 -----------ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 221 -----------~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iP 288 (436)
++..++++...+ ....+ +..+.+.|+|+|-++.- .. . .-.++++.++..+ ++|
T Consensus 104 ~p~~d~~v~~~~~~~g~~~i~G~------~t~~e-~~~A~~~Gad~vk~FPa--~~-~-----~G~~~lk~i~~~~~~ip 168 (225)
T 1mxs_A 104 TPGITEDILEAGVDSEIPLLPGI------STPSE-IMMGYALGYRRFKLFPA--EI-S-----GGVAAIKAFGGPFGDIR 168 (225)
T ss_dssp CSSCCHHHHHHHHHCSSCEECEE------CSHHH-HHHHHTTTCCEEEETTH--HH-H-----THHHHHHHHHTTTTTCE
T ss_pred eCCCCHHHHHHHHHhCCCEEEee------CCHHH-HHHHHHCCCCEEEEccC--cc-c-----cCHHHHHHHHhhCCCCe
Confidence 111233333221 11122 34456788888888651 10 0 0257788998877 899
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
|++.|||+ .+.+.++++..|+++|. |++++..+.+
T Consensus 169 vvaiGGI~-~~N~~~~l~~~Ga~~v~-gSai~~~~~i 203 (225)
T 1mxs_A 169 FCPTGGVN-PANVRNYMALPNVMCVG-TTWMLDSSWI 203 (225)
T ss_dssp EEEBSSCC-TTTHHHHHHSTTBCCEE-ECTTSCHHHH
T ss_pred EEEECCCC-HHHHHHHHhccCCEEEE-EchhcCchhh
Confidence 99999995 68999999856999999 9877654443
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.024 Score=57.85 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
...++++++.++ .++.|+..+-+..|-. ++...+.++++++.+ ++.+.|-..-+++.++++
T Consensus 186 ~~~~~~~~~~a~~~~~~G~~~~K~k~g~~----------------~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~ 249 (412)
T 4h1z_A 186 EDTRAKRAELAAAWQAKGFSSFKFASPVA----------------DDGVAKEMEILRERLGPAVRIACDMHWAHTASEAV 249 (412)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEEGGGC----------------TTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCcceeccccccc----------------hhhHHHHHHHHHhccCCeEEEEeccccCCCHHHHH
Confidence 346788887765 4567999998864321 122234456666655 467777777789999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+++.+++.|+.+| ++... +-|++..+++++.+++||.+.=.+.+..|+.++++...+|.|++
T Consensus 250 ~~~~~l~~~~l~~i-------EqP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~ 312 (412)
T 4h1z_A 250 ALIKAMEPHGLWFA-------EAPVR---TEDIDGLARVAASVSTAIAVGEEWRTVHDMVPRVARRALAIVQP 312 (412)
T ss_dssp HHHHHHGGGCEEEE-------ECCSC---TTCHHHHHHHHHHCSSEEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHhhccccccee-------cCCCC---ccchHHHHHHHhhcCCccccCCcccchHhHHHHHHcCCCCEEEe
Confidence 99999999998776 22111 34789999999999999999999999999999999877777653
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.044 Score=53.08 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=94.2
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCcccc---hhhccChhh-hh------hhhhccCCCCCEEEEec--C--CCHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPMLHS---RIFTESEKY-RN------EEFATCKEDRPLFVQFC--A--NDPEILLNA 175 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Temisa---~~l~~~~~~-~~------~~~~~~~~e~plivQL~--g--~d~e~~~~A 175 (436)
|.+.=|..+-+++.+.|.+.+++.--.. -++...... .. ..+.......++++=+- + .++++..+.
T Consensus 21 ~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~n 100 (275)
T 1o66_A 21 MLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAA 100 (275)
T ss_dssp EEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHH
T ss_pred EEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHH
Confidence 6778899999999999999987652111 111111000 00 11111122234555543 2 257777766
Q ss_pred H-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--------------C--CCh
Q 013813 176 A-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--------------F--PNL 238 (436)
Q Consensus 176 A-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--------------g--~~~ 238 (436)
| ++++.|+++|.|--| +...+.|+++.+ .++||.--+.+ + ...
T Consensus 101 a~rl~kaGa~aVklEdg-------------------~e~~~~I~al~~-agIpV~gHiGLtPQs~~~~ggf~v~grt~~a 160 (275)
T 1o66_A 101 AAELMAAGAHMVKLEGG-------------------VWMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGRGGKA 160 (275)
T ss_dssp HHHHHHTTCSEEEEECS-------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGTTC-----------CH
T ss_pred HHHHHHcCCcEEEECCc-------------------HHHHHHHHHHHH-cCCCeEeeeccCceeecccCCeEEEeChHHH
Confidence 6 566789999999843 123444555543 37788733332 1 123
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 294 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG 294 (436)
+++++=|+.++++|++.|.+.+.. -+..++|.+.+++|+|+.|.
T Consensus 161 ~~~i~rA~a~~eAGA~~ivlE~vp------------~~~a~~it~~l~iP~igIGa 204 (275)
T 1o66_A 161 QALLNDAKAHDDAGAAVVLMECVL------------AELAKKVTETVSCPTIGIGA 204 (275)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC------------HHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEecCC------------HHHHHHHHHhCCCCEEEECC
Confidence 567777889999999999997642 15578999999999998774
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.07 Score=51.87 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=91.8
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCcccc---hhhccCh----hh---hhhhhhccCCCCCEEE-Eec-CC---CHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPMLHS---RIFTESE----KY---RNEEFATCKEDRPLFV-QFC-AN---DPEILLN 174 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Temisa---~~l~~~~----~~---~~~~~~~~~~e~pliv-QL~-g~---d~e~~~~ 174 (436)
|.+.=|..+-+++.+.|.+.+++.--.. .++.... .. ....+.. -.+.|+++ =+- |+ ++++..+
T Consensus 38 ~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r-~~~~~~vvaD~pfgsy~~s~~~a~~ 116 (281)
T 1oy0_A 38 MLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVR-GAPHALVVADLPFGSYEAGPTAALA 116 (281)
T ss_dssp EEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHH-HCTTSEEEEECCTTSSTTCHHHHHH
T ss_pred EEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh-cCCCCeEEEECCCCcccCCHHHHHH
Confidence 6778899999999999999887652111 1111100 00 0001111 12456554 332 22 6777665
Q ss_pred -HHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--------------CCC-
Q 013813 175 -AARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--------------FPN- 237 (436)
Q Consensus 175 -AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--------------g~~- 237 (436)
|.++++ .|+++|.|--| +...+.|+++.+. ++||.--+-+ |.+
T Consensus 117 na~rl~~eaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf~v~grt~ 176 (281)
T 1oy0_A 117 AATRFLKDGGAHAVKLEGG-------------------ERVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGRGD 176 (281)
T ss_dssp HHHHHHHTTCCSEEEEEBS-------------------GGGHHHHHHHHHH-TCCEEEEEECCC--------------CH
T ss_pred HHHHHHHHhCCeEEEECCc-------------------HHHHHHHHHHHHC-CCCEEeeecCCcceecccCCeEEEeCcH
Confidence 557776 69999999843 1234444454432 6777622211 112
Q ss_pred -hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC
Q 013813 238 -LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 294 (436)
Q Consensus 238 -~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG 294 (436)
.+++++=|+.++++|++.|.+.+.. -+..++|.+.+++|+|+.|.
T Consensus 177 ~a~~~i~rA~a~~eAGA~~ivlE~vp------------~~~a~~it~~l~iP~igIGa 222 (281)
T 1oy0_A 177 AAEQTIADAIAVAEAGAFAVVMEMVP------------AELATQITGKLTIPTVGIGA 222 (281)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESCC------------HHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecCC------------HHHHHHHHHhCCCCEEEeCC
Confidence 2456677888999999999997642 15578999999999998774
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.004 Score=58.27 Aligned_cols=128 Identities=19% Similarity=0.150 Sum_probs=76.9
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
.+.|+|+|-|... . +. ...+.+.+.++..++. ++.+.+-+ +... + .+.+.+.|.+.|.+
T Consensus 79 ~~~Gad~Vll~~s----e--r~-------l~~~e~~~~~~~a~~~-Gl~~iv~v--~~~~-e----~~~~~~~~~~~i~~ 137 (219)
T 2h6r_A 79 KDCGCKGTLINHS----E--KR-------MLLADIEAVINKCKNL-GLETIVCT--NNIN-T----SKAVAALSPDCIAV 137 (219)
T ss_dssp HHHTCCEEEESBT----T--BC-------CBHHHHHHHHHHHHHH-TCEEEEEE--SSSH-H----HHHHTTTCCSEEEE
T ss_pred HHcCCCEEEECCc----c--cc-------CCHHHHHHHHHHHHHC-CCeEEEEe--CCch-H----HHHHHhCCCCEEEE
Confidence 3458999988421 0 00 0123356666665433 66555553 3322 2 24456678889989
Q ss_pred ccCcccccCC--CCCccC-H-HHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 259 HGRTRDEKDG--KKFRAD-W-NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 259 HgRt~~~~~~--~~g~ad-~-~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
+.+..-+... .+...+ . ..++.+++.. ++||++.|||++.+++..+.+. |+|||.||++++.-++....
T Consensus 138 ~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~-gaDgvlVGsAi~~~~d~~~~ 211 (219)
T 2h6r_A 138 EPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDL-GAEGVLLASGVVKAKNVEEA 211 (219)
T ss_dssp CCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTT-TCCCEEESHHHHTCSSHHHH
T ss_pred EeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhC-CCCEEEEcHHHhCcccHHHH
Confidence 8877421110 111112 2 3344455554 7999999999999999997765 99999999999987665443
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.019 Score=58.03 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=92.3
Q ss_pred EEec-CCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCCh
Q 013813 162 VQFC-ANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 238 (436)
Q Consensus 162 vQL~-g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~ 238 (436)
..++ +.+++++.+.+ +.++.|+..+-+..| | ..+.+. ++++++.+ ++.+.+...-+++.
T Consensus 154 ~~~g~~~~~~~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d~~~----v~avr~a~~~~~l~vDaN~~~~~ 215 (386)
T 1wue_A 154 ISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-P-------------GYDVEP----VALIRQHFPNLPLMVDANSAYTL 215 (386)
T ss_dssp EEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSHHH----HHHHHHHCTTSCEEEECTTCCCG
T ss_pred EEecCCCCHHHHHHHHHHHHHhhhheEEEeeC-c-------------HHHHHH----HHHHHHhCCCCeEEEeCCCCCCH
Confidence 3443 34688887766 456779999998765 1 123344 45555544 56777777778888
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+++ ++++.+++.++.+|- +... +-||+..+++++.+++||.+.=.+.+.+++.++++...+|.|++=
T Consensus 216 ~~a-~~~~~l~~~~i~~iE-------qP~~---~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik 282 (386)
T 1wue_A 216 ADL-PQLQRLDHYQLAMIE-------QPFA---ADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINLK 282 (386)
T ss_dssp GGH-HHHHGGGGSCCSCEE-------CCSC---TTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred HHH-HHHHHHHhCCCeEEe-------CCCC---cccHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEEc
Confidence 888 889999998887762 2111 347888999999999999999999999999999998779988763
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.037 Score=56.04 Aligned_cols=130 Identities=12% Similarity=0.221 Sum_probs=96.0
Q ss_pred CCEEEEecCCC-HHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 158 RPLFVQFCAND-PEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d-~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
.|+...+...+ ++++.+.++ .++.|+..|-+..| | ..+.+ .++++++.+ ++.+.|-..-
T Consensus 138 v~~~~~~~~~~~~e~~~~~~~~~~~~G~~~~K~Kv~-~-------------~~d~~----~v~avR~~~~~~~l~vDaN~ 199 (388)
T 3qld_A 138 VEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIA-P-------------GRDRA----AIKAVRLRYPDLAIAADANG 199 (388)
T ss_dssp EEBEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECB-T-------------TBSHH----HHHHHHHHCTTSEEEEECTT
T ss_pred EEEeEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC-c-------------HHHHH----HHHHHHHHCCCCeEEEECCC
Confidence 45556666555 899888775 56789999999865 1 13444 445555554 4667777777
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.+++.. ++.+++.++.+| ++... +-|++..+++++.+++||.+.=.+.+..++.++++...+|.|+
T Consensus 200 ~~~~~~A~~-~~~l~~~~i~~i-------EeP~~---~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~ 268 (388)
T 3qld_A 200 SYRPEDAPV-LRQLDAYDLQFI-------EQPLP---EDDWFDLAKLQASLRTPVCLDESVRSVRELKLTARLGAARVLN 268 (388)
T ss_dssp CCCGGGHHH-HHHGGGGCCSCE-------ECCSC---TTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEE
T ss_pred CCChHHHHH-HHHHhhCCCcEE-------ECCCC---cccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEE
Confidence 888888876 788888887766 22111 3478889999999999999998999999999999987789887
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 269 ~k 270 (388)
T 3qld_A 269 VK 270 (388)
T ss_dssp EC
T ss_pred EC
Confidence 65
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.014 Score=55.11 Aligned_cols=104 Identities=15% Similarity=0.256 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcccCccEEEEeccCC---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC
Q 013813 211 PLVKSLVEKLALNLNVPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 287 (436)
Q Consensus 211 ~~v~eIv~av~~~~~iPVsVKiRlg~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i 287 (436)
..+..+++.+...-++-|+|---.+. +..+..++|+.++++|+.+|.+. ..+.++++++.+++
T Consensus 5 ~~~~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~--------------~~~~i~~ir~~v~~ 70 (232)
T 3igs_A 5 SLLEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE--------------GIDNLRMTRSLVSV 70 (232)
T ss_dssp CHHHHHHHHHHHHCCEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE--------------SHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC--------------CHHHHHHHHHhcCC
Confidence 34566666663333455555422222 34677899999999999998761 24779999999999
Q ss_pred cEEE-c----cC--C---CCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 288 PVLA-N----GN--V---RHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 288 PVia-n----GG--I---~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
||++ + || + .+.++++++++. |+|.|.++.++..+|..+.++
T Consensus 71 Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~-Gad~V~l~~~~~~~p~~l~~~ 121 (232)
T 3igs_A 71 PIIGIIKRDLDESPVRITPFLDDVDALAQA-GAAIIAVDGTARQRPVAVEAL 121 (232)
T ss_dssp CEEEECBCCCSSCCCCBSCSHHHHHHHHHH-TCSEEEEECCSSCCSSCHHHH
T ss_pred CEEEEEeecCCCcceEeCccHHHHHHHHHc-CCCEEEECccccCCHHHHHHH
Confidence 9986 1 44 3 467789888876 999999998888888655443
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.013 Score=57.53 Aligned_cols=90 Identities=19% Similarity=0.240 Sum_probs=61.8
Q ss_pred HHHHHHHhcccCc-cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEE
Q 013813 214 KSLVEKLALNLNV-PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 290 (436)
Q Consensus 214 ~eIv~av~~~~~i-PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVi 290 (436)
.+-++++++..+- +|.|-+. +.++ ++.+.++|+|+|-++. .+.+.++++++.+ +++|.
T Consensus 196 ~~ai~~~r~~~~~~kI~vev~---tlee----~~eA~~aGaD~I~ld~------------~~~e~l~~~v~~~~~~~~I~ 256 (296)
T 1qap_A 196 RQAVEKAFWLHPDVPVEVEVE---NLDE----LDDALKAGADIIMLDN------------FNTDQMREAVKRVNGQARLE 256 (296)
T ss_dssp HHHHHHHHHHSTTSCEEEEES---SHHH----HHHHHHTTCSEEEESS------------CCHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhCCCCcEEEEeC---CHHH----HHHHHHcCCCEEEECC------------CCHHHHHHHHHHhCCCCeEE
Confidence 4555666655432 4444322 2222 4444578999998863 2346677777666 69999
Q ss_pred EccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 291 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 291 anGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++||| +.+.+.++.+ +|+|++.+|.....-|+
T Consensus 257 ASGGI-t~~~i~~~a~-~GvD~isvGsli~~a~~ 288 (296)
T 1qap_A 257 VSGNV-TAETLREFAE-TGVDFISVGALTKHVRA 288 (296)
T ss_dssp ECCCS-CHHHHHHHHH-TTCSEEECSHHHHEEEC
T ss_pred EECCC-CHHHHHHHHH-cCCCEEEEeHHHcCCCC
Confidence 99999 8999999887 59999999986554454
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.016 Score=55.58 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+..++|+.++++|++.|.|-. -.. .+ .-..+.+..+++.+++||+.-++|.+..++.+++.. |||+|.++..
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt--~~~--~f--~G~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~-GAD~VlL~~~ 137 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLT--EPH--RF--GGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAF-GASAALLIVA 137 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEC--CCS--SS--CCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHT-TCSEEEEEHH
T ss_pred CCHHHHHHHHHHcCCCEEEEec--chh--hh--ccCHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHc-CCCEEEECcc
Confidence 5778999999999999998831 111 11 124677889999999999999999999999998875 9999999999
Q ss_pred HhhCCccchhh
Q 013813 319 LLENPALFAGF 329 (436)
Q Consensus 319 al~nP~lf~~i 329 (436)
.+. ..++++
T Consensus 138 ~l~--~~l~~l 146 (254)
T 1vc4_A 138 LLG--ELTGAY 146 (254)
T ss_dssp HHG--GGHHHH
T ss_pred chH--HHHHHH
Confidence 887 444433
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.026 Score=58.38 Aligned_cols=122 Identities=18% Similarity=0.212 Sum_probs=96.0
Q ss_pred CCHHHHHHHHH-HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA~-~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~ 243 (436)
.+++++++.|+ .++. ||..|-|..|-. +++.-.+.++++++.+ ++.+.|-..-+|+.++++.
T Consensus 192 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~ 256 (445)
T 3vdg_A 192 LDPDGIVAQARRMIDEYGFSAIKLKGGVF---------------APEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVK 256 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCC---------------CHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHH
Confidence 67899988875 4554 999999986531 2344456677777766 6778888778899999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+++.+++. +.+| ++. . .+++..+++++.+++||.+.-.+.+..++.++++...+|.|++-
T Consensus 257 ~~~~L~~~-l~~i-------EeP--~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~d 316 (445)
T 3vdg_A 257 VAAGLEGV-LEYL-------EDP--T---PGLDGMAEVAAQAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSD 316 (445)
T ss_dssp HHHHTTTT-CSEE-------ECC--S---SSHHHHHHHHHHCSSCEEESSSCCSGGGHHHHHHHTCCSEEEEC
T ss_pred HHHHHhhH-HHee-------eCC--C---CCHHHHHHHHhcCCCCEEcCCcCCCHHHHHHHHHcCCCCEEeeC
Confidence 99999987 7766 221 1 26888999999999999999999999999999998789988874
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.012 Score=55.13 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=85.9
Q ss_pred CCCEE--EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEe
Q 013813 157 DRPLF--VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKI 232 (436)
Q Consensus 157 e~pli--vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKi 232 (436)
+.+++ +-++ -.|+.+.+++ .+.|+|.|.+|..+. .+.+.+.++.+++.-. ..+.|-+
T Consensus 58 ~~~iflDlKl~-Dip~t~~~~~--~~~Gad~vtVH~~~g----------------~~~l~~a~~~~~~~g~~~~~~~Vt~ 118 (221)
T 3exr_A 58 DKIIVADTKCA-DAGGTVAKNN--AVRGADWMTCICSAT----------------IPTMKAARKAIEDINPDKGEIQVEL 118 (221)
T ss_dssp TSEEEEEEEEC-SCHHHHHHHH--HTTTCSEEEEETTSC----------------HHHHHHHHHHHHHHCTTTCEEEEEC
T ss_pred CCcEEEEEEee-ccHHHHHHHH--HHcCCCEEEEeccCC----------------HHHHHHHHHHHHhcCCCcceEEEEE
Confidence 44555 4455 5688877763 567999999996322 2335556666654311 2333333
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGa 310 (436)
-...+.++ ++.+.+.|++.+.+|--...+..+. ....+.++.+++.. +++|...|||+ ++++..+.+. |+
T Consensus 119 lts~~~~~----~~~~~~~~~~~~v~~~a~~~~~~Gv--v~s~~e~~~ir~~~~~~~~i~v~gGI~-~~~~~~~~~a-Ga 190 (221)
T 3exr_A 119 YGDWTYDQ----AQQWLDAGISQAIYHQSRDALLAGE--TWGEKDLNKVKKLIEMGFRVSVTGGLS-VDTLKLFEGV-DV 190 (221)
T ss_dssp CSSCCHHH----HHHHHHTTCCEEEEECCHHHHHHTC--CCCHHHHHHHHHHHHHTCEEEEESSCC-GGGGGGGTTC-CC
T ss_pred cCCCCHHH----HHHHHcCCHHHHHHHHHHhcCCCcc--ccCHHHHHHHHHhhcCCceEEEECCCC-HHHHHHHHHC-CC
Confidence 23334333 3344567999988874332222221 12334466666654 68899999994 6777777765 99
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|.+++||++...++
T Consensus 191 d~~VvG~~I~~a~d 204 (221)
T 3exr_A 191 FTFIAGRGITEAKN 204 (221)
T ss_dssp SEEEECHHHHTSSS
T ss_pred CEEEECchhhCCCC
Confidence 99999999886554
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.022 Score=58.96 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=95.7
Q ss_pred CCHHHHHHHHH-HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA~-~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~ 243 (436)
.+++++++.|+ .++. ||..|-|..|-. +++.-.+.++++++.+ ++.+.|-..-+|+.++++.
T Consensus 190 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~ 254 (445)
T 3va8_A 190 LDPEGVVKQAKKIIDEYGFKAIKLKGGVF---------------PPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKW 254 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHH
Confidence 57999988775 4555 999999986531 2344456677777766 5778888777899999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+++.+++. +.+| ++. . .+++..+++++.+++||.+.-.+.+..++.++++...+|.|++-
T Consensus 255 ~~~~L~~~-l~~i-------EeP--~---~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d 314 (445)
T 3va8_A 255 VAKELEGI-VEYL-------EDP--A---GEIEGMAAVAKEASMPLATNMAVVAFDHLPPSILQDAVQVILSD 314 (445)
T ss_dssp HHHHTTTT-CSEE-------ESC--B---SHHHHHHHHHTTCSSCEEESSSCCSGGGHHHHHHTTCCSEEEEC
T ss_pred HHHHHhhh-cCeE-------eec--C---cCHHHHHHHHHcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEec
Confidence 99999987 7766 221 1 26888899999999999999899999999999998789988873
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0072 Score=57.33 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=95.5
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCch--hh---hc------CcccccccCChHHHHHHHHH------
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR--IA---RR------GNYGAFLMDNLPLVKSLVEK------ 219 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~--~~---~~------~~~Gs~Ll~~p~~v~eIv~a------ 219 (436)
.+++.=+.+.++++..+.++.+ +.|++.||+-+-.|.. .. ++ -+.|. .-+.+.+...+++
T Consensus 34 ~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGT--Vlt~~~a~~Ai~AGA~fIv 111 (232)
T 4e38_A 34 LKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGT--ILNGEQALAAKEAGATFVV 111 (232)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEEC--CCSHHHHHHHHHHTCSEEE
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECC--cCCHHHHHHHHHcCCCEEE
Confidence 5788889999999999999755 5689999997654441 00 00 11233 2246666555544
Q ss_pred -----------HhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CC
Q 013813 220 -----------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 287 (436)
Q Consensus 220 -----------v~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~i 287 (436)
+++ .++|+...+. +..+ +..+.++|+|.|-+..... .+ ..++++.++..+ ++
T Consensus 112 sP~~~~~vi~~~~~-~gi~~ipGv~---TptE----i~~A~~~Gad~vK~FPa~~---~g-----G~~~lkal~~p~p~i 175 (232)
T 4e38_A 112 SPGFNPNTVRACQE-IGIDIVPGVN---NPST----VEAALEMGLTTLKFFPAEA---SG-----GISMVKSLVGPYGDI 175 (232)
T ss_dssp CSSCCHHHHHHHHH-HTCEEECEEC---SHHH----HHHHHHTTCCEEEECSTTT---TT-----HHHHHHHHHTTCTTC
T ss_pred eCCCCHHHHHHHHH-cCCCEEcCCC---CHHH----HHHHHHcCCCEEEECcCcc---cc-----CHHHHHHHHHHhcCC
Confidence 221 2444444321 2222 3445789999998865321 11 248899998865 79
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
|++..|||. ++.+.++++. |+.++.+|..+ .++.+.
T Consensus 176 p~~ptGGI~-~~n~~~~l~a-Ga~~~vgGs~l-~~~~~i 211 (232)
T 4e38_A 176 RLMPTGGIT-PSNIDNYLAI-PQVLACGGTWM-VDKKLV 211 (232)
T ss_dssp EEEEBSSCC-TTTHHHHHTS-TTBCCEEECGG-GCHHHH
T ss_pred CeeeEcCCC-HHHHHHHHHC-CCeEEEECchh-cChHHh
Confidence 999999996 8999999986 89988887543 444433
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.018 Score=56.77 Aligned_cols=131 Identities=16% Similarity=0.064 Sum_probs=87.5
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.=.++++.+.+.+ .+||.+.+- .+..+++++
T Consensus 31 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg--~~t~~ai~l 98 (316)
T 3e96_A 31 DWHHYKETVDRIVDNGIDVIVPCG----------NTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG--YATSTAIEL 98 (316)
T ss_dssp CHHHHHHHHHHHHTTTCCEECTTS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC--SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC--cCHHHHHHH
Confidence 56677777754 567999987762 234444445566666777666554 489999974 478899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-cCCCCHHHHHHHHHhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-GGI~s~eda~~~l~~tGaDgV 313 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||
T Consensus 99 a~~A~~~Gadavlv~~P~y~---~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La~~pnIvgi 166 (316)
T 3e96_A 99 GNAAKAAGADAVMIHMPIHP---YVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLAPLQNLVGV 166 (316)
T ss_dssp HHHHHHHTCSEEEECCCCCS---CCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHTTCTTEEEE
T ss_pred HHHHHhcCCCEEEEcCCCCC---CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 99999999999987532211 00111224667888888899986 66 656677887777644344443
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.022 Score=57.61 Aligned_cols=125 Identities=9% Similarity=0.032 Sum_probs=93.1
Q ss_pred CCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
.+++++++.++ .++.|+..+-+..|-. +++.-.+.++++++.+ ++.+.|-..-+|+.+++++
T Consensus 163 ~~~~~~~~~~~~~~~~G~~~~Kikvg~~---------------~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~ 227 (388)
T 4h83_A 163 EPLGSIADEMHNYQELGLAGVKFKVGGL---------------SAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVD 227 (388)
T ss_dssp CTTCSHHHHHHHHHHHTBSEEEEECSSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCceEeecCCCC---------------CHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHH
Confidence 34567776665 4566999999886421 2333345567777766 5778888777899999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+++.+++.++.+| ++. ....-|++..+++++.+++||.+.=.+.+..++.++++...+|.|++
T Consensus 228 ~~~~l~~~~~~~i-------EeP--~~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~ 290 (388)
T 4h83_A 228 LSRRIADLNIRWF-------EEP--VEWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNF 290 (388)
T ss_dssp HHHHTTTSCCCCE-------ESC--BCSTTHHHHHHHHHHHSSSCEEECTTCSSHHHHHHHHHHTCCSEECC
T ss_pred HHHHhhhcCccee-------ecC--cccccchHHHHHHHhhcCCCccCCccccChHhHHHHHHcCCCCeEee
Confidence 9999999998776 221 10012577889999999999999999999999999999877888764
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.047 Score=53.12 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=87.4
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~l 87 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCG----------TTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAG-SNSTAEAIAF 87 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHHHHH
Confidence 56667777754 567999987762 234444445666667777666554 489998842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE------ccCCCCHHHHHHHHH-hcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA------NGNVRHMEDVQKCLE-ETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia------nGGI~s~eda~~~l~-~tGaDgV 313 (436)
++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+. .|---+++.+.++.+ ..++-||
T Consensus 88 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgi 160 (292)
T 2vc6_A 88 VRHAQNAGADGVLIVSPYYNK---PTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGV 160 (292)
T ss_dssp HHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEE
Confidence 999999999999775432110 00011245677888889999876 454568888888876 4344444
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.1 Score=49.08 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-C----ChhhHH
Q 013813 169 PEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-P----NLQDTI 242 (436)
Q Consensus 169 ~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-~----~~~d~~ 242 (436)
++.+.+.|+.++ .|+.+|..+ . .+-++++++.+++||.-..|.. . -.....
T Consensus 35 ~~~~~~~A~a~~~~Ga~~i~~~-------------------~----~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~ 91 (229)
T 3q58_A 35 PEIVAAMAQAAASAGAVAVRIE-------------------G----IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYL 91 (229)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEE-------------------S----HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSH
T ss_pred cchHHHHHHHHHHCCCcEEEEC-------------------C----HHHHHHHHHhcCCCEEEEEeecCCCCceEeCccH
Confidence 788888887665 489999873 0 2456888999999987444331 1 111223
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+-++.+.++|+|.|.+-...... . ..--++++.+++ .++++++ ++.+.++++++.+. |+|.|.+
T Consensus 92 ~~i~~~~~aGad~I~l~~~~~~~-p----~~l~~~i~~~~~-~g~~v~~--~v~t~eea~~a~~~-Gad~Ig~ 155 (229)
T 3q58_A 92 QDVDALAQAGADIIAFDASFRSR-P----VDIDSLLTRIRL-HGLLAMA--DCSTVNEGISCHQK-GIEFIGT 155 (229)
T ss_dssp HHHHHHHHHTCSEEEEECCSSCC-S----SCHHHHHHHHHH-TTCEEEE--ECSSHHHHHHHHHT-TCSEEEC
T ss_pred HHHHHHHHcCCCEEEECccccCC-h----HHHHHHHHHHHH-CCCEEEE--ecCCHHHHHHHHhC-CCCEEEe
Confidence 34566789999999775432210 0 111356666665 4677665 78999999998886 9999864
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.04 Score=53.48 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=75.6
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE-EEec-cCcccccCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL-LAVH-GRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~-I~VH-gRt~~~~~~~~g~ad~~~i~ 279 (436)
-||..+.+..+++++- .+++||.+|.-...+.++....++.+...|... +.+| |-+.-+.+ .....|+..+.
T Consensus 127 Igs~~~~n~~ll~~~a-----~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y-~~~~vdl~~i~ 200 (276)
T 1vs1_A 127 IGARNMQNFPLLREVG-----RSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPS-TRFTLDVAAVA 200 (276)
T ss_dssp ECGGGTTCHHHHHHHH-----HHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCS-SSSBCBHHHHH
T ss_pred ECcccccCHHHHHHHH-----ccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCc-CcchhCHHHHH
Confidence 4788899998877765 358999999655557788888888888999854 4557 43221111 12357899999
Q ss_pred HHHhhCCCcEEEc----cCCCC--HHHHHHHHHhcCcceeeeehH
Q 013813 280 AVKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 280 ~ik~~~~iPVian----GGI~s--~eda~~~l~~tGaDgVmIGRg 318 (436)
.+++..++||++. +|.+. ..-+...+. .||+|+||=+-
T Consensus 201 ~lk~~~~lpVi~dssH~~g~~~~~~~~~~aAva-~Ga~Gl~IE~H 244 (276)
T 1vs1_A 201 VLKEATHLPVIVDPSHPAGRRSLVPALAKAGLA-AGADGLIVEVH 244 (276)
T ss_dssp HHHHHBSSCEEECCHHHHCSGGGHHHHHHHHHH-TTCSEEEEEBC
T ss_pred HHHHHhCCCEEEeCCCCCCccchHHHHHHHHHH-cCCCEEEEEec
Confidence 9999889999762 24332 333444455 49999998753
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.11 Score=51.08 Aligned_cols=206 Identities=15% Similarity=0.156 Sum_probs=119.5
Q ss_pred HHHHHHhCCC-cEEEccCCCCCcHHHHHHHHHhCCCeEEe-Cc-ccc--hhhccChh-------hhhhhhhccCCCCCEE
Q 013813 94 WAHWTKLGRP-KLIVAPMVDNSELPFRMLCRRYGAEAAYT-PM-LHS--RIFTESEK-------YRNEEFATCKEDRPLF 161 (436)
Q Consensus 94 ~~~~~~lg~~-~i~lAPM~gvtd~~fR~l~~~~Ga~l~~T-em-isa--~~l~~~~~-------~~~~~~~~~~~e~pli 161 (436)
-.||+.+-++ +.++ |.++=|..+-+++.+.|.+.+|+ .. ++. .++..... .....+.....+.|++
T Consensus 7 ~~Lr~ll~~~~~~i~--~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~Pvi 84 (302)
T 3fa4_A 7 TSLRRALENPDSFIV--APGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVI 84 (302)
T ss_dssp HHHHHHHHSTTCCEE--EEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEE
T ss_pred HHHHHHHhCCCCeEE--EecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEE
Confidence 3466665433 2333 34777888889999999998875 32 221 11111110 0001111112378888
Q ss_pred EEe---cCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcc-cccccCChHHHHHHHHHHhc--ccCccEEEEecc
Q 013813 162 VQF---CANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNY-GAFLMDNLPLVKSLVEKLAL--NLNVPVSCKIRV 234 (436)
Q Consensus 162 vQL---~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~-Gs~Ll~~p~~v~eIv~av~~--~~~iPVsVKiRl 234 (436)
+=+ +| +++...+.++.+ +.|+.+|.|--...-+ +.++. |..|....+.+.+|-.++.. ..+.++.|=-|.
T Consensus 85 aD~d~Gyg-~~~~v~~tv~~l~~aGaagv~iEDq~~~K--rcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ART 161 (302)
T 3fa4_A 85 ADADTGYG-GPIMVARTTEQYSRSGVAAFHIEDQVQTK--RCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIART 161 (302)
T ss_dssp EECTTTTS-SHHHHHHHHHHHHHTTCCEEEECSBCCC---------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred EECCCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCCCc--ccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 775 34 588888888655 5699999997543111 11222 23344433444444433321 124566666665
Q ss_pred C----CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEc---cC---CCCHHHHHH
Q 013813 235 F----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLAN---GN---VRHMEDVQK 303 (436)
Q Consensus 235 g----~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVian---GG---I~s~eda~~ 303 (436)
. ...+++++=++...++|+|.|-+++.+ +.+.++++.+.+ ++|+.+| || ..+.+++.
T Consensus 162 Da~~~~gldeAi~Ra~ay~eAGAD~ifi~g~~-----------~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~eL~- 229 (302)
T 3fa4_A 162 DSLQTHGYEESVARLRAARDAGADVGFLEGIT-----------SREMARQVIQDLAGWPLLLNMVEHGATPSISAAEAK- 229 (302)
T ss_dssp CCHHHHCHHHHHHHHHHHHTTTCSEEEETTCC-----------CHHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHHHH-
T ss_pred cccccCCHHHHHHHHHHHHHcCCCEEeecCCC-----------CHHHHHHHHHHhcCCceeEEEecCCCCCCCCHHHHH-
Confidence 3 346788888999999999999998753 236678888877 4898775 33 23444443
Q ss_pred HHHhcCcceeeeehHH
Q 013813 304 CLEETGCEGVLSAESL 319 (436)
Q Consensus 304 ~l~~tGaDgVmIGRga 319 (436)
+ -|+..|..+-.+
T Consensus 230 --~-lGv~~v~~~~~~ 242 (302)
T 3fa4_A 230 --E-MGFRIIIFPFAA 242 (302)
T ss_dssp --H-HTCSEEEETTTT
T ss_pred --H-cCCCEEEEchHH
Confidence 3 499888877544
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.18 Score=46.62 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=100.5
Q ss_pred CCCCcHHHHHHHHHhCCCeEEeCcc-cchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHHHHHHHcCCCcEEEE
Q 013813 111 VDNSELPFRMLCRRYGAEAAYTPML-HSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 111 ~gvtd~~fR~l~~~~Ga~l~~Temi-sa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~AA~~v~~g~D~IdL 188 (436)
-|.|+..=-..+.+.|+|++---+. .+..... ........... +.....|-++- .+++.+.+.++.+ +.|.|.|
T Consensus 7 CGit~~eda~~a~~~GaD~iGfif~~~SpR~V~-~~~a~~i~~~~-~~~~~~VgVfvn~~~~~i~~~~~~~--~ld~vQL 82 (205)
T 1nsj_A 7 CGITNLEDALFSVESGADAVGFVFYPKSKRYIS-PEDARRISVEL-PPFVFRVGVFVNEEPEKILDVASYV--QLNAVQL 82 (205)
T ss_dssp CCCCSHHHHHHHHHHTCSEEEEECCTTCTTBCC-HHHHHHHHHHS-CSSSEEEEEESSCCHHHHHHHHHHH--TCSEEEE
T ss_pred CCCCcHHHHHHHHHcCCCEEEEEecCCCCCcCC-HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhh--CCCEEEE
Confidence 3566665557788899986332232 1221211 11111111111 22334444555 4666666555443 6799999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
|- . .+++.+.+ ++. ++|+.--++.... .+ + ..+.+..+|++.+..... .++
T Consensus 83 HG-------------~---e~~~~~~~----l~~--~~~vika~~v~~~-~~---l-~~~~~~~~d~~LlD~~~~--~~G 133 (205)
T 1nsj_A 83 HG-------------E---EPIELCRK----IAE--RILVIKAVGVSNE-RD---M-ERALNYREFPILLDTKTP--EYG 133 (205)
T ss_dssp CS-------------C---CCHHHHHH----HHT--TSEEEEEEEESSH-HH---H-HHHGGGTTSCEEEEESCS--SSS
T ss_pred CC-------------C---CCHHHHHH----Hhc--CCCEEEEEEcCCH-HH---H-HHHHHcCCCEEEECCCCC--CCC
Confidence 92 1 24444433 332 3677655555321 22 2 223334489998865432 123
Q ss_pred CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 269 KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 269 ~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++| ..||+.++.++ ..+.|++..||++ ++.+.++++..++.||=+.+|.-..|
T Consensus 134 GtG~~fdw~~l~~~~-~~~~p~~LAGGL~-peNV~~ai~~~~p~gVDvsSGvE~~p 187 (205)
T 1nsj_A 134 GSGKTFDWSLILPYR-DRFRYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGVEAFP 187 (205)
T ss_dssp SCCSCCCGGGTGGGG-GGSSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGEEET
T ss_pred CCCCccCHHHHHhhh-cCCCcEEEECCCC-HHHHHHHHHhcCCCEEEECCceecCC
Confidence 333 47998776542 3378999999995 78888888877999999998875444
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.041 Score=55.16 Aligned_cols=110 Identities=18% Similarity=0.293 Sum_probs=76.1
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~ 279 (436)
-||..+++.++++++- .+++||.+|.-...+.++....++.+.+.|...+++ +|-+.-+.+ .....|+..+.
T Consensus 195 IgAr~~~n~~LL~~va-----~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~-~~~~vdl~ai~ 268 (350)
T 1vr6_A 195 IGARNAQNFRLLSKAG-----SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKA-TRNTLDISAVP 268 (350)
T ss_dssp ECGGGTTCHHHHHHHH-----TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCS-SSSBCCTTHHH
T ss_pred ECcccccCHHHHHHHH-----ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCc-ChhhhhHHHHH
Confidence 4788889988877664 468999999655557788888888888999866655 443221111 12357899999
Q ss_pred HHHhhCCCcEEE-cc---CCCC--HHHHHHHHHhcCcceeeeehH
Q 013813 280 AVKNALRIPVLA-NG---NVRH--MEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 280 ~ik~~~~iPVia-nG---GI~s--~eda~~~l~~tGaDgVmIGRg 318 (436)
.+++..++||++ .. |-+. ..-+...+.. ||||+||=+=
T Consensus 269 ~lk~~~~lpVi~dssHs~G~~~~v~~~a~AAvA~-GA~Gl~IE~H 312 (350)
T 1vr6_A 269 IIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAV-GAHGIIVEVH 312 (350)
T ss_dssp HHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHHH-TCSEEEEEBC
T ss_pred HHHHhhCCCEEEeCCCCCcccchHHHHHHHHHHh-CCCEEEEEec
Confidence 999988999976 22 4332 3334444554 9999998753
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.043 Score=56.61 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHH-HcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAARR-VEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA~~-v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~ 243 (436)
.+++++++.|+. ++. ||..|-|..|-. +++.-.+.|+++++.+ ++.+.|-..-+|+.++++.
T Consensus 187 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~ 251 (441)
T 3vc5_A 187 LDPDGIVAQARLLIGEYGFRSIKLKGGVF---------------PPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIR 251 (441)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHH
Confidence 689999888864 554 999999986531 2344455667777766 5778888777899999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+++.+++. +.+| ++. . .+++..+++++.+++||.+.=.+.+..++.++++...+|.|++-
T Consensus 252 ~~~~L~~~-l~~i-------EeP--~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~d 311 (441)
T 3vc5_A 252 VGRALDGV-LEYL-------EDP--T---PGIDGMARVAAEVPMPLATNMCVVTPEHLPAAVERRPIGVLLID 311 (441)
T ss_dssp HHHHTTTT-CSEE-------ECC--S---SSHHHHHHHHTTSSSCEEESSSCCSGGGHHHHHHHCCCSEEEEC
T ss_pred HHHHHHHH-HHHh-------hcc--C---CCHHHHHHHHhcCCCCEEeCCCCCCHHHHHHHHHhCCCCEEeec
Confidence 99999987 7665 221 1 27888999999999999998889999999999998789988763
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.04 Score=53.13 Aligned_cols=153 Identities=20% Similarity=0.184 Sum_probs=93.8
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCc-ccc--hhhccChh----hh---hhhhhccCCCCCEEEEecCC---CHHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPM-LHS--RIFTESEK----YR---NEEFATCKEDRPLFVQFCAN---DPEILLNAA 176 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Tem-isa--~~l~~~~~----~~---~~~~~~~~~e~plivQL~g~---d~e~~~~AA 176 (436)
|.+.=|..+-+++.+.|.+.+++.- +.. .++..... .. ...+.......++++=+--. ++++..+.|
T Consensus 21 ~~tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a 100 (264)
T 1m3u_A 21 TITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENA 100 (264)
T ss_dssp EEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHH
T ss_pred EEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHH
Confidence 6677899999999999999988752 111 11111100 00 01111112223455554332 677776655
Q ss_pred -HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--------------CCCh---
Q 013813 177 -RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--------------FPNL--- 238 (436)
Q Consensus 177 -~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--------------g~~~--- 238 (436)
++++.|+++|.|--| +...+.|+++.+. ++||.--+-+ |.+.
T Consensus 101 ~rl~kaGa~aVklEgg-------------------~e~~~~I~al~~a-gipV~gHiGLtPq~v~~~ggf~v~grt~~~a 160 (264)
T 1m3u_A 101 ATVMRAGANMVKIEGG-------------------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG 160 (264)
T ss_dssp HHHHHTTCSEEECCCS-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHH
T ss_pred HHHHHcCCCEEEECCc-------------------HHHHHHHHHHHHC-CCCeEeeecCCceeecccCCeEEEeCCHHHH
Confidence 556779999988743 1234455555433 7888732221 2232
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 294 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG 294 (436)
+++++=|+.++++|++.|.+.+.. -+..++|.+.+++|+|+.|.
T Consensus 161 ~~~i~rA~a~~eAGA~~ivlE~vp------------~~~a~~it~~l~iP~igIGa 204 (264)
T 1m3u_A 161 DQLLSDALALEAAGAQLLVLECVP------------VELAKRITEALAIPVIGIGA 204 (264)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCC------------HHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHCCCcEEEEecCC------------HHHHHHHHHhCCCCEEEeCC
Confidence 456677888999999999997642 15578999999999998773
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.03 Score=53.87 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=73.8
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-ccC-cccccCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGR-TRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-HgR-t~~~~~~~~g~ad~~~i~ 279 (436)
-||..+++..+++++.+ .++||.+|.-...+.++..+.++.+...|...+++ |-. +.-..+ .....|+..+.
T Consensus 112 Iga~~~~n~~ll~~~a~-----~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y-~~~~v~L~ai~ 185 (262)
T 1zco_A 112 IGARNSQNFELLKEVGK-----VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETA-TRFTLDISAVP 185 (262)
T ss_dssp ECGGGTTCHHHHHHHTT-----SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCS-SSSBCCTTHHH
T ss_pred ECcccccCHHHHHHHHh-----cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCc-ChhhcCHHHHH
Confidence 36777888887766543 68999999655557888888899999999865554 522 121122 12256888899
Q ss_pred HHHhhCCCcEEEc----cCCCCH--HHHHHHHHhcCcceeeeehH
Q 013813 280 AVKNALRIPVLAN----GNVRHM--EDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 280 ~ik~~~~iPVian----GGI~s~--eda~~~l~~tGaDgVmIGRg 318 (436)
.+++..++||++. +|.+.. .-+..... .|++||||=+-
T Consensus 186 ~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva-~Ga~Gl~iE~H 229 (262)
T 1zco_A 186 VVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYA-IGADGIMVEVH 229 (262)
T ss_dssp HHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHH-TTCSEEEEEBC
T ss_pred HHHhhhCCCEEEEcCCCCCccchHHHHHHHHHH-cCCCEEEEEec
Confidence 9999889998653 233221 22344454 49999999853
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.086 Score=51.56 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=87.3
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~ai~l 99 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGG----------TTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHASIDL 99 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC-CCCHHHHHHH
Confidence 56677777754 567999998873 234444445566667777666554 589998842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgVm 314 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||=
T Consensus 100 a~~A~~~Gadavlv~~P~y~---~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK 172 (301)
T 1xky_A 100 TKKATEVGVDAVMLVAPYYN---KPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIK 172 (301)
T ss_dssp HHHHHHTTCSEEEEECCCSS---CCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHhcCCCEEEEcCCCCC---CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 99999999999977533211 00001124667788888899986 45 4445788888876543444443
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.034 Score=54.76 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=85.8
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++ +++.|+|+|=++ |.-|-+..-..+.-.++++.+.+.+ .+||.+.+-. +..+++++
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~----------GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~--st~~ai~l 98 (314)
T 3d0c_A 31 DWKGLDDNVEFLLQNGIEVIVPN----------GNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY--SVDTAIEL 98 (314)
T ss_dssp CHHHHHHHHHHHHHTTCSEECTT----------SGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS--SHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----------cccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc--CHHHHHHH
Confidence 5666777775 456799998766 2234444445666666777666554 5899998643 77889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE-c-cCCCCHHHHHHHHHhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-N-GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia-n-GGI~s~eda~~~l~~tGaDgV 313 (436)
++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+. | .|+-+++.+.++.+..++-||
T Consensus 99 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~tg~l~~~~~~~La~~pnIvgi 166 (314)
T 3d0c_A 99 GKSAIDSGADCVMIHQPVHPY---ITDAGAVEYYRNIIEALDAPSIIYFKDAHLSDDVIKELAPLDKLVGI 166 (314)
T ss_dssp HHHHHHTTCSEEEECCCCCSC---CCHHHHHHHHHHHHHHSSSCEEEEECCTTSCTHHHHHHTTCTTEEEE
T ss_pred HHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCHHHHHHHHcCCCEEEE
Confidence 999999999999775432210 00011246678888889999865 4 222677888777643344444
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.1 Score=50.56 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=86.6
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~l 87 (289)
T 2yxg_A 19 DFDGLEENINFLIENGVSGIVAVG----------TTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAG-SNCTEEAIEL 87 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHHHHH
Confidence 56677777754 567999998873 234444445566666777666544 489998842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHH-HhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCL-EETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l-~~tGaDgV 313 (436)
++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+ +| |---+++.+.++. +..++-||
T Consensus 88 a~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgi 160 (289)
T 2yxg_A 88 SVFAEDVGADAVLSITPYYNK---PTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAV 160 (289)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEE
Confidence 999999999999775332110 0001124667788888899986 45 4446888888877 44344444
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.1 Score=51.17 Aligned_cols=133 Identities=16% Similarity=0.090 Sum_probs=87.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~~st~~ai~l 99 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVLG----------TTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEKTLKL 99 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC-CccHHHHHHH
Confidence 56677777754 567999998883 234444445566666777666554 489998842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHH-HhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCL-EETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l-~~tGaDgVm 314 (436)
++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+ +| |---+++.+.++. +..++-||=
T Consensus 100 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK 173 (306)
T 1o5k_A 100 VKQAEKLGANGVLVVTPYYNK---PTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIX 173 (306)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEe
Confidence 999999999999775332110 0001124667788888899986 44 4345788888877 443444443
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.085 Score=53.02 Aligned_cols=131 Identities=8% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc---CccEEEEe
Q 013813 157 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKI 232 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~---~iPVsVKi 232 (436)
..|+...+...+++++++.++ .++.|+..+-+..|.. +.+.-.+.++++++++ ++.+.|-.
T Consensus 139 ~v~~y~s~~~~~~~~~~~~a~~~~~~G~~~~KiKvg~~---------------~~~~di~~v~~vr~a~~g~~~~l~vDa 203 (376)
T 4h2h_A 139 SVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGAR---------------PIEIDIEAIRKVWEAVRGTGIALAADG 203 (376)
T ss_dssp EEECEEEECSCCHHHHHHHHHHHHHHTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTSCCEEEEEC
T ss_pred ceeEeeecccCCHHHHHHHHHHHHhcCceEEEEecCCC---------------CHHHHHHHHHHHHhhccCCeeEEEEee
Confidence 346667888889998887774 5567999999987631 1222234455555443 46777777
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.-+++..+++.+++.+++.+. +| ++. -.+++.++.+++..++||.+.=.+.+..++.++++...+|.
T Consensus 204 N~~~~~~~A~~~~~~l~~~~~-~i-------EeP-----~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~ 270 (376)
T 4h2h_A 204 NRGWTTRDALRFSRECPDIPF-VM-------EQP-----CNSFEDLEAIRPLCHHALYMDEDGTSLNTVITAAATSLVDG 270 (376)
T ss_dssp TTCCCHHHHHHHHHHCTTSCE-EE-------ESC-----SSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred ccCCCHHHHHHHHHHHhhccc-cc-------cCC-----cchhhhHhhhhhcccCccccCcccCCHHHHHHHHHhhccCc
Confidence 778999999999999887764 32 221 12577788999999999999889999999999999877888
Q ss_pred eee
Q 013813 313 VLS 315 (436)
Q Consensus 313 VmI 315 (436)
|++
T Consensus 271 v~~ 273 (376)
T 4h2h_A 271 FGM 273 (376)
T ss_dssp ECC
T ss_pred ccc
Confidence 865
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.085 Score=51.96 Aligned_cols=132 Identities=18% Similarity=0.109 Sum_probs=87.1
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC-CChhhHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-PNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg-~~~~d~~~ 243 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+. .| .+..++++
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaG--vg~~~t~~ai~ 110 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLG----------STGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVS--VSDLTTAKTVR 110 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEE--CCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEe--cCCCCHHHHHH
Confidence 56677777754 567999998873 234444445566666777666554 5899998 44 46789999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHH-HHhcCcceee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKC-LEETGCEGVL 314 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~-l~~tGaDgVm 314 (436)
+++.++++|+|++.+..-.... .+...-+++++.|.+.+++||+ +| |---+++.+.++ .+...+-||=
T Consensus 111 la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiK 185 (315)
T 3na8_A 111 RAQFAESLGAEAVMVLPISYWK---LNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVK 185 (315)
T ss_dssp HHHHHHHTTCSEEEECCCCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEE
T ss_pred HHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEE
Confidence 9999999999999875432210 0001225667888888899986 55 545567877777 4433444443
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.071 Score=52.06 Aligned_cols=132 Identities=17% Similarity=0.123 Sum_probs=86.3
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++ .++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 87 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVG----------TTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAG-SNNPVEAVRY 87 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccC-CCCHHHHHHH
Confidence 5666777775 4567999988773 234444445566666777666544 489998842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgV 313 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||
T Consensus 88 a~~A~~~Gadavlv~~P~y~---~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi 159 (297)
T 2rfg_A 88 AQHAQQAGADAVLCVAGYYN---RPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGV 159 (297)
T ss_dssp HHHHHHHTCSEEEECCCTTT---CCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEE
T ss_pred HHHHHhcCCCEEEEcCCCCC---CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEE
Confidence 99999999999977533211 00001124667788888899986 45 544678888887654334443
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.094 Score=51.36 Aligned_cols=135 Identities=17% Similarity=0.114 Sum_probs=89.1
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~G----------ttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 102 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSG----------TTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAHSIRL 102 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHHHHH
Confidence 55667776754 567999998873 234444445566667777666654 579999842 2467899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.++++|+|++.+..-.... .+...-+++++.|.+.+++||+ +| |---+++.+.++.+..++-||=-.
T Consensus 103 a~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKds 177 (304)
T 3l21_A 103 AKACAAEGAHGLLVVTPYYSK---PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVXDA 177 (304)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEEC
T ss_pred HHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEECC
Confidence 999999999999876432110 0011224667888888999986 54 666678888887754444444333
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.013 Score=56.67 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=60.9
Q ss_pred HHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-----C
Q 013813 214 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----R 286 (436)
Q Consensus 214 ~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-----~ 286 (436)
.+-++++++..+ +++.+-+. +.++ ++.+.++|+|+|-++.- +.+.++++++.+ +
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev~---tlee----~~~A~~aGaD~I~ld~~------------~~~~l~~~v~~l~~~~~~ 229 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIECE---SFEE----AKNAMNAGADIVMCDNL------------SVLETKEIAAYRDAHYPF 229 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEES---SHHH----HHHHHHHTCSEEEEETC------------CHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCCceEEEEcC---CHHH----HHHHHHcCCCEEEECCC------------CHHHHHHHHHHhhccCCC
Confidence 456666666654 34555332 2233 33445689999988641 134455444333 4
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+||.++||| +.+.+.++++ +|+|++.+|+.....|++
T Consensus 230 ~~i~AsGGI-~~~ni~~~~~-aGaD~i~vGs~i~~a~~~ 266 (273)
T 2b7n_A 230 VLLEASGNI-SLESINAYAK-SGVDAISVGALIHQATFI 266 (273)
T ss_dssp CEEEEESSC-CTTTHHHHHT-TTCSEEECTHHHHTCCCC
T ss_pred cEEEEECCC-CHHHHHHHHH-cCCcEEEEcHHhcCCCCC
Confidence 999999999 7899999887 499999999987766654
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.067 Score=53.82 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=66.3
Q ss_pred hcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc------------------------c-------cC--
Q 013813 221 ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------------------E-------KD-- 267 (436)
Q Consensus 221 ~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~------------------------~-------~~-- 267 (436)
......|.++.+-.+.+.+...++++.++++|++.|.|+--+.. + ..
T Consensus 118 ~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g 197 (370)
T 1gox_A 118 ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKAND 197 (370)
T ss_dssp HTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC-------
T ss_pred HhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccC
Confidence 33333577777555556666778888889999998877532110 0 00
Q ss_pred ---------CCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 268 ---------GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 268 ---------~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
......+|+.++.+++.+++||+. +++.+.++++.+.+. |+|+|.++
T Consensus 198 ~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~v-K~~~~~e~a~~a~~~-Gad~I~vs 253 (370)
T 1gox_A 198 SGLSSYVAGQIDRSLSWKDVAWLQTITSLPILV-KGVITAEDARLAVQH-GAAGIIVS 253 (370)
T ss_dssp --HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEE-ECCCSHHHHHHHHHT-TCSEEEEC
T ss_pred ccHHHHHHhhcCccchHHHHHHHHHHhCCCEEE-EecCCHHHHHHHHHc-CCCEEEEC
Confidence 001134688899999999999995 778999999998886 99999985
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.027 Score=56.88 Aligned_cols=97 Identities=16% Similarity=0.261 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CC
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 287 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~i 287 (436)
+++...+.++.+++.-.++|.+-+ +.. .+..+.++.+.++|++.|.|+.-.. . .....+.++++++.. ++
T Consensus 80 s~e~~~~~i~~vk~~~~l~vga~v--g~~-~~~~~~~~~lieaGvd~I~idta~G-----~-~~~~~~~I~~ik~~~p~v 150 (366)
T 4fo4_A 80 SIEQQAAQVHQVKISGGLRVGAAV--GAA-PGNEERVKALVEAGVDVLLIDSSHG-----H-SEGVLQRIRETRAAYPHL 150 (366)
T ss_dssp CHHHHHHHHHHHHTTTSCCCEEEC--CSC-TTCHHHHHHHHHTTCSEEEEECSCT-----T-SHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHhcCceeEEEEe--ccC-hhHHHHHHHHHhCCCCEEEEeCCCC-----C-CHHHHHHHHHHHHhcCCC
Confidence 577788888888875444444443 322 2345678889999999998852111 1 012246688888876 78
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
||++ |.|.|.++++++.+. |||+|.+|
T Consensus 151 ~Vi~-G~v~t~e~A~~a~~a-GAD~I~vG 177 (366)
T 4fo4_A 151 EIIG-GNVATAEGARALIEA-GVSAVKVG 177 (366)
T ss_dssp EEEE-EEECSHHHHHHHHHH-TCSEEEEC
T ss_pred ceEe-eeeCCHHHHHHHHHc-CCCEEEEe
Confidence 8776 779999999998886 99999995
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.084 Score=52.43 Aligned_cols=133 Identities=17% Similarity=0.089 Sum_probs=88.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. .-|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~eai~l 121 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILG----------STGIYMYLTREERRRAIEAAATILRGRRTLMAGIG-ALRTDEAVAL 121 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHHH
Confidence 56667777754 466999998883 234444445666667777666555 489999843 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgVm 314 (436)
++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||=
T Consensus 122 a~~A~~~Gadavlv~~P~Y~~---~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~pnIvgiK 194 (332)
T 2r8w_A 122 AKDAEAAGADALLLAPVSYTP---LTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIK 194 (332)
T ss_dssp HHHHHHHTCSEEEECCCCSSC---CCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEE
Confidence 999999999999775332110 0001125667888888999986 45 4345888888876544444443
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.011 Score=62.81 Aligned_cols=81 Identities=14% Similarity=0.164 Sum_probs=58.0
Q ss_pred HHHHHHcC---ccEEEeccCcccc-cCCCC-CccCHHHHHHHHhh------CCCcEEEccCCCCHHHHHHHHHh------
Q 013813 245 AKMLEDAG---CSLLAVHGRTRDE-KDGKK-FRADWNAIKAVKNA------LRIPVLANGNVRHMEDVQKCLEE------ 307 (436)
Q Consensus 245 ak~le~aG---~d~I~VHgRt~~~-~~~~~-g~ad~~~i~~ik~~------~~iPVianGGI~s~eda~~~l~~------ 307 (436)
++.+.+.| +|+|.+..-.... +.+.. .+..++.++++++. .++||++-||| +.+++.++++.
T Consensus 121 a~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~g~ 199 (540)
T 3nl6_A 121 VDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSSNG 199 (540)
T ss_dssp HHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCTTS
T ss_pred HHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhccccc
Confidence 45567789 9999885433221 11111 13447778887765 48999999999 68999999972
Q ss_pred -cCcceeeeehHHhhCCccc
Q 013813 308 -TGCEGVLSAESLLENPALF 326 (436)
Q Consensus 308 -tGaDgVmIGRgal~nP~lf 326 (436)
.|+|||.++++++..++..
T Consensus 200 ~~GadgvAVvsaI~~a~dp~ 219 (540)
T 3nl6_A 200 KRSLDGICVVSDIIASLDAA 219 (540)
T ss_dssp SCBCSCEEESHHHHTCTTHH
T ss_pred ccCceEEEEeHHHhcCCCHH
Confidence 4899999999999866643
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.053 Score=53.01 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=73.0
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKA 280 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ 280 (436)
-||..+++.++++++ . .+++||.+|.-...+.++....++.+...|...+++.-|... +++. ...|+..+..
T Consensus 114 IgA~~~~n~~Ll~~~----a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~--~~y~~~~~dl~~i~~ 186 (292)
T 1o60_A 114 LPAFLARQTDLVEAM----A-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTN--FGYDNLIVDMLGFSV 186 (292)
T ss_dssp ECGGGTTCHHHHHHH----H-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE--CSTTCEECCTTHHHH
T ss_pred ECcccccCHHHHHHH----H-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCccccCHHHHHH
Confidence 478888998865554 3 468999999555457788888889999999866655444332 2231 1268889999
Q ss_pred HHhhC-CCcEEEc---------------cCCCC--HHHHHHHHHhcCcceeeeehH
Q 013813 281 VKNAL-RIPVLAN---------------GNVRH--MEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 281 ik~~~-~iPVian---------------GGI~s--~eda~~~l~~tGaDgVmIGRg 318 (436)
+++.. ++||+.. +|... ..-+...+. .|++|+||=+=
T Consensus 187 lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva-~Ga~Gl~IE~H 241 (292)
T 1o60_A 187 MKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLA-VGIAGLFLEAH 241 (292)
T ss_dssp HHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHH-HCCSEEEEEEE
T ss_pred HHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHH-cCCCEEEEEec
Confidence 99887 8999981 23211 122334444 59999998754
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.13 Score=49.96 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=86.1
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 87 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCG----------TTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTG-GNATHEAVHL 87 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHHH
Confidence 56677777764 567999998873 234444445555566676666544 489998842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHH-HhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCL-EETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l-~~tGaDgV 313 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+ +| |---+++.+.++. +..++-||
T Consensus 88 a~~A~~~Gadavlv~~P~y~---~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgi 160 (294)
T 2ehh_A 88 TAHAKEVGADGALVVVPYYN---KPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVAS 160 (294)
T ss_dssp HHHHHHTTCSEEEEECCCSS---CCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHhcCCCEEEECCCCCC---CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEE
Confidence 99999999999977533211 00001124667788888899986 45 4446888888877 43334443
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.18 Score=50.36 Aligned_cols=120 Identities=10% Similarity=0.061 Sum_probs=89.6
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.+.+ +.++.|+..+-+..|- +++.-.+.++++++.+ ++.+.|...-+++.++++++
T Consensus 144 ~~~~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~ 207 (372)
T 3cyj_A 144 PLRRLQEQLGGWAAAGIPRVKMKVGR----------------EPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYW 207 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCS----------------SGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 456666555 5667799999987541 3344456666666665 46778887778899999999
Q ss_pred HHHHHHc-CccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~a-G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++. ++.+| ++.. .+-||+..+++++.++ +||.+.=.+.+..++.++ ...+|.|.+
T Consensus 208 ~~~l~~~~~i~~i-------EqP~---~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~--~~a~d~i~i 269 (372)
T 3cyj_A 208 AGAFAREAGISYL-------EEPV---SSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQLHDL--AGCVDILQA 269 (372)
T ss_dssp HHHHHHHHCCCEE-------ECSS---CTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHH--HTTCSEEEE
T ss_pred HHHHHhhcCCcEE-------ECCC---CcccHHHHHHHHHhCCCCCCEECCCCccCHHHHHHH--hCCCCEEec
Confidence 9999998 88776 2211 1347888999999887 799999999999999987 457898876
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.056 Score=51.14 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=74.5
Q ss_pred HHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC
Q 013813 215 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 294 (436)
Q Consensus 215 eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG 294 (436)
++++.+.+. +|..=+|. .+.+++.++++.+.+.|+..|-|.-++.. ..+.|+++++.+.-.+++.|.
T Consensus 26 ~~~~~l~~~---~vv~Vir~-~~~~~a~~~a~al~~gGi~~iEvt~~t~~---------a~e~I~~l~~~~~~~~iGaGT 92 (232)
T 4e38_A 26 TINNQLKAL---KVIPVIAI-DNAEDIIPLGKVLAENGLPAAEITFRSDA---------AVEAIRLLRQAQPEMLIGAGT 92 (232)
T ss_dssp HHHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTSTT---------HHHHHHHHHHHCTTCEEEEEC
T ss_pred HHHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCC---------HHHHHHHHHHhCCCCEEeECC
Confidence 344555433 44444444 45688999999999999999999777532 358899999887667999999
Q ss_pred CCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 295 VRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
|.+.++++.+++. |||+|+..- .||.+....+
T Consensus 93 Vlt~~~a~~Ai~A-GA~fIvsP~---~~~~vi~~~~ 124 (232)
T 4e38_A 93 ILNGEQALAAKEA-GATFVVSPG---FNPNTVRACQ 124 (232)
T ss_dssp CCSHHHHHHHHHH-TCSEEECSS---CCHHHHHHHH
T ss_pred cCCHHHHHHHHHc-CCCEEEeCC---CCHHHHHHHH
Confidence 9999999999997 999998763 4666655443
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.12 Score=50.66 Aligned_cols=132 Identities=12% Similarity=0.146 Sum_probs=86.7
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCC-ChhhHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFP-NLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~-~~~d~~~ 243 (436)
|.+.+.+-++. ++.|+|+|=++. .-|-+..-..+.-.++++.+.+.+ .+||.+. .|. +..++++
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaG--vg~~~t~~ai~ 97 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGG----------STGEAFVQSLSEREQVLEIVAEEAKGKIKLIAH--VGCVSTAESQQ 97 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEE--CCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------eccChhhCCHHHHHHHHHHHHHHhCCCCcEEEe--cCCCCHHHHHH
Confidence 56667777754 567999998873 234444445666667777666554 5899988 443 5688999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEE-Ec----cCC-CCHHHHHHHHHhcCcceee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVL-AN----GNV-RHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVi-an----GGI-~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++|+|++.+..-... ..+...-+++.+.|.+.++ +||+ +| .|+ -+++.+.++.+...+-||=
T Consensus 98 la~~A~~~Gadavlv~~P~y~---~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK 172 (303)
T 2wkj_A 98 LAASAKRYGFDAVSAVTPFYY---PFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALX 172 (303)
T ss_dssp HHHHHHHHTCSEEEEECCCSS---CCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHhCCCCEEEecCCCCC---CCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEe
Confidence 999999999999977533211 0000112466778888888 9986 45 344 5788888876543444443
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.063 Score=53.23 Aligned_cols=122 Identities=14% Similarity=0.283 Sum_probs=92.4
Q ss_pred EecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhH
Q 013813 163 QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDT 241 (436)
Q Consensus 163 QL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~ 241 (436)
.+...+++++++.++...+|+..|-+..|-. . -.+.++++++..+..+.|-..-++ +.+++
T Consensus 129 ~~~~~~~e~~~~~a~~~~~g~~~~K~Kvg~~--------------~----d~~~v~avR~~~~~~l~vDaN~~~t~~~~A 190 (338)
T 3ijl_A 129 TIGIDTPDVVRAKTKECAGLFNILKVKLGRD--------------N----DKEMIETIRSVTDLPIAVDANQGWKDRQYA 190 (338)
T ss_dssp BCCCCCHHHHHHHHHHHHTTCSSEEEECSSS--------------C----HHHHHHHHHTTCCCCEEEECTTCCCCHHHH
T ss_pred EEeCCCHHHHHHHHHHHHhcccEEEEecCcH--------------H----HHHHHHHHHhhcCCcEEEECcCCCCCHHHH
Confidence 3455789999888865444899999887631 1 245677888888777777777789 48899
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.++++.+++.|+.+| ++... +-|++..+++++.+++||.+.=.+.+..++.+++ ..+|.|+
T Consensus 191 ~~~~~~l~~~~i~~i-------EeP~~---~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~--~a~d~i~ 251 (338)
T 3ijl_A 191 LDMIHWLKEKGIVMI-------EQPMP---KEQLDDIAWVTQQSPLPVFADESLQRLGDVAALK--GAFTGIN 251 (338)
T ss_dssp HHHHHHHHHTTEEEE-------ECCSC---TTCHHHHHHHHHTCSSCEEESTTCCSGGGTGGGB--TTBSEEE
T ss_pred HHHHHHHhhCCCCEE-------ECCCC---CCcHHHHHHHHhcCCCCEEECCCCCCHHHHHHHH--hhCCEEE
Confidence 999999999987765 22111 3478889999999999999999999999988765 3677765
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.065 Score=51.41 Aligned_cols=183 Identities=13% Similarity=0.062 Sum_probs=114.7
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCc--ccc-hhhccChhhh-h------hhhhccCCCCCEEEEe---cCCCHHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPM--LHS-RIFTESEKYR-N------EEFATCKEDRPLFVQF---CANDPEILLNAA 176 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Tem--isa-~~l~~~~~~~-~------~~~~~~~~e~plivQL---~g~d~e~~~~AA 176 (436)
|.++=|..+-+++.+.|.+.+|+-- ++. .++....... . ..+.. -.+.|+++=+ +|+++ +..+.
T Consensus 24 ~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r-~~~~pviaD~~~Gyg~~~--~~~~~ 100 (255)
T 2qiw_A 24 LPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITS-AVSIPVSVDVESGYGLSP--ADLIA 100 (255)
T ss_dssp CCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHH-HCSSCEEEECTTCTTCCH--HHHHH
T ss_pred EecCcCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHh-cCCCCEEeccCCCcCcHH--HHHHH
Confidence 7788899999999999999888662 321 1111110000 0 00111 1237888754 34555 44444
Q ss_pred HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc---cCccEEEEeccCC----------ChhhHHH
Q 013813 177 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN---LNVPVSCKIRVFP----------NLQDTIK 243 (436)
Q Consensus 177 ~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~---~~iPVsVKiRlg~----------~~~d~~~ 243 (436)
++++.|+++|.|--+... -|..| -..+...+-|++++++ .++|+.|--|.+. ..+++++
T Consensus 101 ~l~~aGa~gv~iEd~~~~-------~~k~l-~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ 172 (255)
T 2qiw_A 101 QILEAGAVGINVEDVVHS-------EGKRV-REAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIK 172 (255)
T ss_dssp HHHHTTCCEEEECSEEGG-------GTTEE-CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHH
T ss_pred HHHHcCCcEEEECCCCCC-------CCCcc-cCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHH
Confidence 666789999999865411 02223 3455566666666554 2678666666531 1567788
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc--cCC----CCHHHHHHHHHhcCcceeeeeh
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN--GNV----RHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian--GGI----~s~eda~~~l~~tGaDgVmIGR 317 (436)
=++.++++|+|.|.+++.. +.+.++++.+.+++|+..+ ++- .+.+ ++-+ -|+..|..|-
T Consensus 173 ra~a~~eAGAd~i~~e~~~-----------~~~~~~~i~~~~~~P~n~~~~~~~~~p~~~~~---eL~~-lGv~~v~~~~ 237 (255)
T 2qiw_A 173 RIKLMEQAGARSVYPVGLS-----------TAEQVERLVDAVSVPVNITAHPVDGHGAGDLA---TLAG-LGVRRVTFGP 237 (255)
T ss_dssp HHHHHHHHTCSEEEECCCC-----------SHHHHHHHHTTCSSCBEEECBTTTBBTTBCHH---HHHH-TTCCEEECTT
T ss_pred HHHHHHHcCCcEEEEcCCC-----------CHHHHHHHHHhCCCCEEEEecCCCCCCCCCHH---HHHH-cCCCEEEEHH
Confidence 8899999999999997642 3467889999999998776 333 3444 3333 4999999886
Q ss_pred H
Q 013813 318 S 318 (436)
Q Consensus 318 g 318 (436)
.
T Consensus 238 ~ 238 (255)
T 2qiw_A 238 L 238 (255)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.022 Score=57.48 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=60.2
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC---H-HHHHHHHhhCCCcEEEccCC---CC
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD---W-NAIKAVKNALRIPVLANGNV---RH 297 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad---~-~~i~~ik~~~~iPVianGGI---~s 297 (436)
+.++..-+......+ +..+.++..|+|++.+|-....+.....|..+ | +.|+.+++.+++||++=| | .+
T Consensus 144 ~~~~ianig~~~~~e---~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~-vg~g~s 219 (365)
T 3sr7_A 144 HLLLATNIGLDKPYQ---AGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKE-VGFGMD 219 (365)
T ss_dssp -CCEEEEEETTSCHH---HHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEE-CSSCCC
T ss_pred CCcEEEEeCCCCCHH---HHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEE-CCCCCC
Confidence 566655544433322 56677788999999998665422111122333 3 788999999999999874 6 79
Q ss_pred HHHHHHHHHhcCcceeeee
Q 013813 298 MEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 298 ~eda~~~l~~tGaDgVmIG 316 (436)
.++++.+.+. |+|+|.++
T Consensus 220 ~e~A~~l~~a-Gad~I~V~ 237 (365)
T 3sr7_A 220 VKTIQTAIDL-GVKTVDIS 237 (365)
T ss_dssp HHHHHHHHHH-TCCEEECC
T ss_pred HHHHHHHHHc-CCCEEEEe
Confidence 9999998886 99999883
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.14 Score=51.14 Aligned_cols=132 Identities=16% Similarity=0.065 Sum_probs=86.2
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. .-|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~eai~l 118 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLG----------SGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG-GTNARETIEL 118 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-SSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHHH
Confidence 56667777754 567999998873 234444445566667777666554 589998842 2456889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHH-HhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCL-EETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l-~~tGaDgV 313 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+ +| |---+++.+.++. +..++-||
T Consensus 119 a~~A~~~Gadavlv~~P~Y~---~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~~pnIvgi 191 (343)
T 2v9d_A 119 SQHAQQAGADGIVVINPYYW---KVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGI 191 (343)
T ss_dssp HHHHHHHTCSEEEEECCSSS---CCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHhcCCCEEEECCCCCC---CCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHHhCCCEEEE
Confidence 99999999999977533211 00001124667788888899986 45 4345788888876 43334443
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.055 Score=54.97 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=73.2
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEE-eccCcccccCC-CCCccCHHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA-VHGRTRDEKDG-KKFRADWNAIKA 280 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~-VHgRt~~~~~~-~~g~ad~~~i~~ 280 (436)
||..+.+.+++.+ +. .+++||.+|.-.+.+.++....++.+.+.|..-|+ +|..+.. ... .....|+..+..
T Consensus 232 gs~~~~n~~LL~~----~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~-yp~~~~~~ldl~~i~~ 305 (385)
T 3nvt_A 232 GARNMQNFELLKA----AG-RVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRT-YEKATRNTLDISAVPI 305 (385)
T ss_dssp CGGGTTCHHHHHH----HH-TSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCC-SCCSSSSBCCTTHHHH
T ss_pred CcccccCHHHHHH----HH-ccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCCCccccCHHHHHH
Confidence 5677778765544 33 46899999966666788888889999999986554 4643432 111 122478999999
Q ss_pred HHhhCCCcEEEc----cCCCCH--HHHHHHHHhcCcceeeeeh
Q 013813 281 VKNALRIPVLAN----GNVRHM--EDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 281 ik~~~~iPVian----GGI~s~--eda~~~l~~tGaDgVmIGR 317 (436)
+++..++||+.. +|-+.. .-+..... .||||+||=+
T Consensus 306 lk~~~~lpV~~D~th~~G~r~~v~~~a~AAvA-~GA~gl~iE~ 347 (385)
T 3nvt_A 306 LKKETHLPVMVDVTHSTGRKDLLLPCAKAALA-IEADGVMAEV 347 (385)
T ss_dssp HHHHBSSCEEEEHHHHHCCGGGHHHHHHHHHH-TTCSEEEEEB
T ss_pred HHHhcCCCEEEcCCCCCCccchHHHHHHHHHH-hCCCEEEEEe
Confidence 999889999664 232222 23445555 4999999874
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.64 Score=44.95 Aligned_cols=177 Identities=17% Similarity=0.191 Sum_probs=104.1
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc-ccch--hhccChhh-------
Q 013813 77 LPSPRGYLSGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM-LHSR--IFTESEKY------- 146 (436)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem-isa~--~l~~~~~~------- 146 (436)
++.+.++.+... +.-++.-|+ +|+ |.+.=|..+-+++.+.|.+.+.|.- +..- ++......
T Consensus 9 ~~~~~~~~t~~~-----lr~~~~~g~-~i~---m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~ 79 (275)
T 3vav_A 9 QESSRPAVTVPK-----LQAMREAGE-KIA---MLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAY 79 (275)
T ss_dssp ----CCCCCHHH-----HHHHHHHTC-CEE---EEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHH
T ss_pred CccccCCcCHHH-----HHHHHHCCC-cEE---EEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHH
Confidence 345556666643 222333333 443 5678899999999999999876652 2111 11111000
Q ss_pred hhhhhhccCCCCCEEEEec-C--CCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc
Q 013813 147 RNEEFATCKEDRPLFVQFC-A--NDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222 (436)
Q Consensus 147 ~~~~~~~~~~e~plivQL~-g--~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~ 222 (436)
....+...-...|+++=+= | .++++..+.+ ++++.|+++|.|--| ....+.|+++.+
T Consensus 80 h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklEdg-------------------~~~~~~i~~l~~ 140 (275)
T 3vav_A 80 HTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGG-------------------EWLAETVRFLVE 140 (275)
T ss_dssp HHHHHHHTCCSSEEEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEECC-------------------GGGHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEECCc-------------------hhHHHHHHHHHH
Confidence 0011222233467777764 2 4777776666 566779999999833 123444555543
Q ss_pred ccCccEEEEecc--------------CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC
Q 013813 223 NLNVPVSCKIRV--------------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 285 (436)
Q Consensus 223 ~~~iPVsVKiRl--------------g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~ 285 (436)
.++||.--+.+ |.+ .+++++=|+.++++|++.|.+-+-. . +.+++|.+.+
T Consensus 141 -~GIpv~gHlgltPq~~~~~gg~~vqgrt~~~a~~~i~rA~a~~eAGA~~ivlE~vp----------~--~~a~~It~~l 207 (275)
T 3vav_A 141 -RAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVP----------T--LVAAEVTREL 207 (275)
T ss_dssp -TTCCEEEEEESCGGGHHHHC---CCCCSHHHHHHHHHHHHHHHHHTCSEEEEESCC----------H--HHHHHHHHHC
T ss_pred -CCCCEEEecCCCceEEeccCCeEEEcCCHHHHHHHHHHHHHHHHcCCCEEEecCCC----------H--HHHHHHHHhC
Confidence 36777643322 222 2356677888999999999886542 1 3578899999
Q ss_pred CCcEEEccC
Q 013813 286 RIPVLANGN 294 (436)
Q Consensus 286 ~iPVianGG 294 (436)
++|+|+.|.
T Consensus 208 ~iP~igIGa 216 (275)
T 3vav_A 208 SIPTIGIGA 216 (275)
T ss_dssp SSCEEEESS
T ss_pred CCCEEEEcc
Confidence 999998873
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.21 Score=48.59 Aligned_cols=134 Identities=14% Similarity=0.070 Sum_probs=89.2
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++ +++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~l 90 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFG----------TTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVL-VDSIEDAADQ 90 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEEC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CccHHHHHHH
Confidence 5666777775 4567999998883 244444456666678888777666 489998843 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC---CCcEE-Ec-----cCCCCHHHHHHHH-HhcC-ccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVL-AN-----GNVRHMEDVQKCL-EETG-CEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~---~iPVi-an-----GGI~s~eda~~~l-~~tG-aDgV 313 (436)
++.++++|+|++.+..-..... .+...-+++.+.|.+.+ ++||+ +| |---+++.+.++. +..+ +-||
T Consensus 91 a~~A~~~Gadavlv~~P~y~~~--~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgi 168 (294)
T 3b4u_A 91 SAEALNAGARNILLAPPSYFKN--VSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGV 168 (294)
T ss_dssp HHHHHHTTCSEEEECCCCSSCS--CCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEE
T ss_pred HHHHHhcCCCEEEEcCCcCCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEE
Confidence 9999999999997753321100 01111256678888888 89986 45 4345788888877 4433 4444
Q ss_pred e
Q 013813 314 L 314 (436)
Q Consensus 314 m 314 (436)
=
T Consensus 169 K 169 (294)
T 3b4u_A 169 K 169 (294)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.03 Score=54.24 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+..++|+.++++|+++|.|..- +.. +. -..+.+..+++.+++||+..+.|.+..++.++... |||+|.++-.
T Consensus 79 ~dp~~~A~~y~~~GA~~IsVltd---~~~-f~--Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~-GAD~VlLi~a 151 (272)
T 3tsm_A 79 FDPPALAKAYEEGGAACLSVLTD---TPS-FQ--GAPEFLTAARQACSLPALRKDFLFDPYQVYEARSW-GADCILIIMA 151 (272)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECC---STT-TC--CCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHT-TCSEEEEETT
T ss_pred CCHHHHHHHHHHCCCCEEEEecc---ccc-cC--CCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHc-CCCEEEEccc
Confidence 47789999999999999977431 111 11 24678899999999999999999999999998875 9999999987
Q ss_pred Hhh
Q 013813 319 LLE 321 (436)
Q Consensus 319 al~ 321 (436)
++.
T Consensus 152 ~L~ 154 (272)
T 3tsm_A 152 SVD 154 (272)
T ss_dssp TSC
T ss_pred ccC
Confidence 764
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.083 Score=49.12 Aligned_cols=130 Identities=10% Similarity=0.112 Sum_probs=76.5
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DRPLFVQFCAND-PEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d-~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.++++=+=-.| ++....+++.+ +.|+|.|.+|. +++ .+.+..+++... ..-+.|-+-.
T Consensus 58 ~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~-----------~~G-----~~~l~~~~~~~~---~~~~~V~~lt 118 (213)
T 1vqt_A 58 NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHS-----------CAG-----YESVERALSATD---KHVFVVVKLT 118 (213)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEG-----------GGC-----HHHHHHHHHHCS---SEEEEECCCT
T ss_pred CCCEEEEeecccCchHHHHHHHHHHHCCCCEEEEec-----------cCC-----HHHHHHHHHhcC---CCeEEEEEeC
Confidence 567777774443 45556666555 45899999994 222 122333333321 1112232211
Q ss_pred C--CCh-hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHH---H------HH
Q 013813 235 F--PNL-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME---D------VQ 302 (436)
Q Consensus 235 g--~~~-~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~e---d------a~ 302 (436)
. ... +.....++. .+.|++ ++..+ +.++.+++..+.+ +..+||.--. | ..
T Consensus 119 s~~~~l~~~v~~~a~~-~e~G~d-vV~~~---------------~~~~~ir~~~~~~-~v~pGI~~~~~~~dq~rv~t~~ 180 (213)
T 1vqt_A 119 SMEGSLEDYMDRIEKL-NKLGCD-FVLPG---------------PWAKALREKIKGK-ILVPGIRMEVKADDQKDVVTLE 180 (213)
T ss_dssp TSCCCHHHHHHHHHHH-HHHTCE-EECCH---------------HHHHHHTTTCCSC-EEECCBC---------CCBCHH
T ss_pred CCCHHHHHHHHHHHHH-hcCCCE-EEEcH---------------HHHHHHHHHCCCC-EEECCCCCCCCccchhhcCCHH
Confidence 1 112 455677888 999998 43321 3467777777667 8888886432 2 46
Q ss_pred HHHHhcCcceeeeehHHhhCCcc
Q 013813 303 KCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+ ++. |+|++.+||+++..++-
T Consensus 181 ~-i~a-Gad~iVvGR~I~~a~dP 201 (213)
T 1vqt_A 181 E-MKG-IANFAVLGREIYLSENP 201 (213)
T ss_dssp H-HTT-TCSEEEESHHHHTSSCH
T ss_pred H-HHC-CCCEEEEChhhcCCCCH
Confidence 6 665 99999999999877663
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.14 Score=49.93 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=85.9
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC-CChhhHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-PNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg-~~~~d~~~ 243 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+. .| .+..++++
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaG--vg~~~t~~ai~ 93 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVG----------TTGESATLSVEEHTAVIEAVVKHVAKRVPVIAG--TGANNTVEAIA 93 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE--CCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEe--CCCcCHHHHHH
Confidence 56667777754 567999998883 234444445566666777666554 4899998 44 46789999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCccee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgV 313 (436)
+++.++++|+|++.+..-.... .+..--+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||
T Consensus 94 la~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgi 166 (297)
T 3flu_A 94 LSQAAEKAGADYTLSVVPYYNK---PSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGV 166 (297)
T ss_dssp HHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEE
T ss_pred HHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHcCCCEEEE
Confidence 9999999999999775332110 0001125667888888899986 44 555677877776643333333
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.2 Score=49.13 Aligned_cols=136 Identities=12% Similarity=0.041 Sum_probs=87.9
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. .-|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 27 D~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 95 (309)
T 3fkr_A 27 DLASQKRAVDFMIDAGSDGLCILA----------NFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTS-HYSTQVCAAR 95 (309)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CchHHHHHHH
Confidence 56777777754 577999998873 234444445666667777666654 589999942 2467889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec----cCCCCHHHHHHHHH-hcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNVRHMEDVQKCLE-ETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an----GGI~s~eda~~~l~-~tGaDgVm 314 (436)
++.++++|+|++.+..-........+...-+++.+.|.+.+++||+ +| |---+++.+.++.+ ..++-||=
T Consensus 96 a~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~~~pnIvgiK 171 (309)
T 3fkr_A 96 SLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAREIEQVAYFX 171 (309)
T ss_dssp HHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHHHSTTEEEEE
T ss_pred HHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHhhCCCEEEEE
Confidence 9999999999997754221000000111225667888888899976 44 55567888888775 33444443
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.095 Score=51.05 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=72.6
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCC-ccCHHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKA 280 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g-~ad~~~i~~ 280 (436)
.||..+++.++++++ . .+++||.+|--...+.++....++.+.+.|.+.|++.-|... +++.. ..|+..+..
T Consensus 116 IgA~~~~n~~LLr~v----a-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~--y~~~~~~vdl~~i~~ 188 (285)
T 3sz8_A 116 VPAFLARQTDLVVAI----A-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSS--FGYDNLVVDMLGFRQ 188 (285)
T ss_dssp ECGGGTTCHHHHHHH----H-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEE--CSSSCEECCTTHHHH
T ss_pred ECccccCCHHHHHHH----H-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC--CCCCcCccCHHHHHH
Confidence 477888888866554 3 368999999555457778888888899999877766333332 22322 268999999
Q ss_pred HHhhC-CCcEEEc---------------cCCCC--HHHHHHHHHhcCcceeeeeh
Q 013813 281 VKNAL-RIPVLAN---------------GNVRH--MEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 281 ik~~~-~iPVian---------------GGI~s--~eda~~~l~~tGaDgVmIGR 317 (436)
+++.. ++||++. ||-+. ..-+...+.. ||||++|=.
T Consensus 189 lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~-GA~gl~IE~ 242 (285)
T 3sz8_A 189 MAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAV-GIAGLFLEA 242 (285)
T ss_dssp HHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHH-CCSEEEEEE
T ss_pred HHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHh-CCCEEEEEe
Confidence 99988 5999983 23221 2234455554 999998863
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.14 Score=50.18 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=84.8
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++ .++.|+|+|=++. .-|-+..-..+.=.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~st~~ai~l 103 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAG----------TTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVG-TNNTRTSVEL 103 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCC-CCCHHHHHHH
Confidence 5666777775 4567999998873 234444445555566676666554 489998842 2366889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgV 313 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||
T Consensus 104 a~~A~~~Gadavlv~~P~y~---~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi 175 (304)
T 3cpr_A 104 AEAAASAGADGLLVVTPYYS---KPSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESDTMRRLSELPTILAV 175 (304)
T ss_dssp HHHHHHTTCSEEEEECCCSS---CCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEE
T ss_pred HHHHHhcCCCEEEECCCCCC---CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEE
Confidence 99999999999977532211 00001124667788888899986 45 433578888777543333333
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.15 Score=49.63 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=86.4
Q ss_pred CHHHHHHHHH-HHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~-~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
|.+.+.+-++ .++ .|+|+|=++. .-|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..++++
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~ 90 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKEAVE 90 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecC-CCCHHHHHH
Confidence 5666777775 457 7999998873 234444445666667777666554 589998842 235688999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCccee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgV 313 (436)
+++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||
T Consensus 91 la~~a~~~Gadavlv~~P~y~---~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi 163 (293)
T 1f6k_A 91 LGKYATELGYDCLSAVTPFYY---KFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGV 163 (293)
T ss_dssp HHHHHHHHTCSEEEEECCCSS---CCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHhcCCCEEEECCCCCC---CCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhcCCCEEEE
Confidence 999999999999977533211 00001124667788888899986 45 333578888887654344444
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.046 Score=54.13 Aligned_cols=129 Identities=14% Similarity=0.203 Sum_probs=81.7
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCCh
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL 238 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~ 238 (436)
...+...+++++.+.++ +.|+..+-+..|.+ |..+..+ .+.++++++.+ ++.+.|-..-+++.
T Consensus 73 ~~ti~~~~~e~~~~~~~--~~G~~~~KiKvg~~---------g~~~~~d----~~~v~avR~~~G~~~~L~vDaN~~w~~ 137 (327)
T 2opj_A 73 NATVPAVGPEEAARIVA--SSGCTTAKVKVAER---------GQSEAND----VARVEAVRDALGPRGRVRIDVNGAWDV 137 (327)
T ss_dssp CEEECSCCHHHHHHHHH--HHCCSEEEEECCC---------------CH----HHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred eEEeCCCCHHHHHHHHH--HCCCCEEEEEeCCC---------CCCHHHH----HHHHHHHHHHhCCCCEEEEECCCCCCH
Confidence 33455567887655444 56999999987643 1122222 45566666665 46777777778999
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++++++++.+++.|+.+| ++. . .+++..+++++.+++||.+.=.+.+..++.++++...+|.|.+=
T Consensus 138 ~~A~~~~~~L~~~~l~~i-------EqP--~---~~~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~a~d~i~ik 203 (327)
T 2opj_A 138 DTAVRMIRLLDRFELEYV-------EQP--C---ATVDELAEVRRRVSVPIAADESIRRAEDPLRVRDAEAADVVVLK 203 (327)
T ss_dssp HHHHHHHHHHGGGCEEEE-------ECC--S---SSHHHHHHHHHHCSSCEEC-----------CTTTTTCCSBEEEC
T ss_pred HHHHHHHHHHHhcCCcEE-------eCC--C---CCHHHHHHHHhhCCCCEEcCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence 999999999999887765 221 1 25778889999999999999999999999998887778888764
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.15 Score=50.13 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=87.4
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC-CChhhHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-PNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg-~~~~d~~~ 243 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+. .| .+..++++
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaG--vg~~st~~ai~ 108 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVG----------TTGESPTLTHEEHKRIIELCVEQVAKRVPVVAG--AGSNSTSEAVE 108 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEE--CCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccCccccCHHHHHHHHHHHHHHhCCCCcEEEe--CCCCCHHHHHH
Confidence 56677777754 567999997763 234444445555566676666554 5899998 44 46789999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHH-hcCcceee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE-ETGCEGVL 314 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~-~tGaDgVm 314 (436)
+++.++++|+|++.+..-.... .. ...-+++.+.|.+.+++||+ +| |---+++.+.++.+ ..++-||=
T Consensus 109 la~~A~~~Gadavlv~~P~y~~-~~--~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK 183 (315)
T 3si9_A 109 LAKHAEKAGADAVLVVTPYYNR-PN--QRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVK 183 (315)
T ss_dssp HHHHHHHTTCSEEEEECCCSSC-CC--HHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHhcCCCEEEECCCCCCC-CC--HHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCEEEEE
Confidence 9999999999999775432110 00 01125667888888899986 44 55567888888776 33444443
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.13 Score=48.72 Aligned_cols=145 Identities=14% Similarity=0.130 Sum_probs=86.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcC-C--CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEec
Q 013813 158 RPLFVQFCANDPEILLNAARRVEP-Y--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~-g--~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiR 233 (436)
.|+++.+ |+..+.++.+.++. + ++.+++|+.. | ..+=.++++.+++. ..+++-+|+
T Consensus 15 ~~~ilal---D~~~l~~~~~~~~~~~~~v~~~Kv~~d~---------~-------~~~G~~~v~~lr~~~~~v~lD~kl- 74 (245)
T 1eix_A 15 SPVVVAL---DYHNRDDALAFVDKIDPRDCRLKVGKEM---------F-------TLFGPQFVRELQQRGFDIFLDLKF- 74 (245)
T ss_dssp CCEEEEE---CCSSHHHHHHHHTTSCTTTCEEEEEHHH---------H-------HHHHHHHHHHHHHTTCCEEEEEEE-
T ss_pred CCeEEEE---CCCCHHHHHHHHHHhCccCcEEEEcHHH---------H-------HHhCHHHHHHHHHCCCcEEEEeec-
Confidence 4677655 44445566666654 4 7899998643 0 12223466677765 567888884
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc----------cCCC--C---------Cc--cCH----------HH---
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----------KDGK--K---------FR--ADW----------NA--- 277 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~----------~~~~--~---------g~--ad~----------~~--- 277 (436)
.........+++.+.++|+|.|+||+-.... ..+. . .. .++ +.
T Consensus 75 -~Dip~t~~~~i~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~G~~~~~~l~v~~~ts~~~~~l~~~~~~~~~~d~Vl~ 153 (245)
T 1eix_A 75 -HDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAER 153 (245)
T ss_dssp -CSCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCCSCHHHHHHH
T ss_pred -cccHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHhccCCCHHHHHHH
Confidence 4332333457888889999999998522100 0000 0 00 000 11
Q ss_pred -------------------HHHHHhhC-CCcEEEccCCCCHH----------HHHHHHHhcCcceeeeehHHhhCCc
Q 013813 278 -------------------IKAVKNAL-RIPVLANGNVRHME----------DVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 278 -------------------i~~ik~~~-~iPVianGGI~s~e----------da~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++++++.. +.+++..|||+.-. .+.++++. |+|.+.+||+++..++
T Consensus 154 ma~~~~~~G~~g~V~~~~ei~~lr~~~~~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~a-Gad~iVvGr~I~~a~d 229 (245)
T 1eix_A 154 LAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSA-GVDYMVIGRPVTQSVD 229 (245)
T ss_dssp HHHHHHHTTCSEEECCGGGHHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHT-TCSEEEECHHHHTSSS
T ss_pred HHHHHHHcCCCeEEeCHHHHHHHHHhcCCCCEEEECCcCCCCCCccchhccCCHHHHHHc-CCCEEEECHHHcCCCC
Confidence 33344433 36799999998421 46666765 9999999999998665
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.19 Score=49.06 Aligned_cols=134 Identities=18% Similarity=0.143 Sum_probs=89.3
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc---CccEEEEeccC-CChhhHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKIRVF-PNLQDTI 242 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~---~iPVsVKiRlg-~~~~d~~ 242 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+. .| .+..+++
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaG--vg~~~t~~ai 93 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGIDAVVPVG----------TTGESATLTHEEHRTCIEIAVETCKGTKVKVLAG--AGSNATHEAV 93 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEE--CCCSSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEe--CCCCCHHHHH
Confidence 56677777754 567999998773 234444445555566666665554 4799988 44 4678999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHh-cCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEE-TGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~-tGaDgVmI 315 (436)
++++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+ +| |---+++.+.++.+. .++-||=-
T Consensus 94 ~la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKd 170 (301)
T 3m5v_A 94 GLAKFAKEHGADGILSVAPYYNK---PTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKE 170 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEEEEEe
Confidence 99999999999999775432110 0001125667888888999986 44 556678888888765 45555543
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
.
T Consensus 171 s 171 (301)
T 3m5v_A 171 A 171 (301)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.056 Score=52.55 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=71.9
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKA 280 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ 280 (436)
.||..+++.++++++ . .+++||.+|.-...+.++....+..+...|...+++.-|+.. +++. ...|+..+..
T Consensus 111 Iga~~~~n~~ll~~~----a-~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~--~~~~~~~~dl~~i~~ 183 (280)
T 2qkf_A 111 LPAFLARQTDLVVAM----A-KTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSS--FGYDNLVVDMLGFGV 183 (280)
T ss_dssp ECGGGTTBHHHHHHH----H-HTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE--CSTTCEECCTTHHHH
T ss_pred ECcccccCHHHHHHH----H-cCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCccccCHHHHHH
Confidence 578888888865554 2 468999999555457788888888899999866655444432 2221 1268888999
Q ss_pred HHhhC-CCcEEEc-----------cCCCCH------HHHHHHHHhcCcceeeeehHH
Q 013813 281 VKNAL-RIPVLAN-----------GNVRHM------EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 281 ik~~~-~iPVian-----------GGI~s~------eda~~~l~~tGaDgVmIGRga 319 (436)
+++.. ++||+.. |+-... .-+.... ..|+||+||=+=+
T Consensus 184 lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aav-a~Ga~G~~IE~H~ 239 (280)
T 2qkf_A 184 MKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGM-ATRLAGLFLESHP 239 (280)
T ss_dssp HHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHH-TTCCSEEEEEC--
T ss_pred HHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHH-HcCCCEEEEeecC
Confidence 99887 8999983 222211 2233334 4599999987543
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.15 Score=50.11 Aligned_cols=132 Identities=10% Similarity=0.087 Sum_probs=87.3
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC-CChhhHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-PNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg-~~~~d~~~ 243 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+. .| .+..++++
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaG--vg~~st~eai~ 109 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVG----------TTGESATLDVEEHIQVIRRVVDQVKGRIPVIAG--TGANSTREAVA 109 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEE--CCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEe--CCCcCHHHHHH
Confidence 66777777764 467999998873 234444445566666666665554 4899997 44 35789999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCcceee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++|+|++.+..-.... .+..--+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||=
T Consensus 110 la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK 183 (314)
T 3qze_A 110 LTEAAKSGGADACLLVTPYYNK---PTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIK 183 (314)
T ss_dssp HHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEE
Confidence 9999999999999775432110 0001125667888888899986 44 5566788888776543444443
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.11 Score=54.16 Aligned_cols=124 Identities=13% Similarity=0.074 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHH-HHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~-~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~ 242 (436)
+.+++++++.|+ .++ .||..|-|..|.+ +++.-.+.|+++++.. ++.+.|-..-+++..+++
T Consensus 198 ~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai 262 (470)
T 3p0w_A 198 AMTPAAIARLAEAATERYGFADFKLKGGVM---------------PGAEEMEAIAAIKARFPHARVTLDPNGAWSLNEAI 262 (470)
T ss_dssp BCSHHHHHHHHHHHHHHHCCSEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTBBCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCC---------------CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHH
Confidence 467899888885 456 5999999987642 1233345566676665 567777777788989999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccC----HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad----~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+++.+++. +.+| ++... +-| ++..+++++.+++||.+.=-+.+..++.++++...+|.+++
T Consensus 263 ~~~~~Le~~-l~~i-------EeP~~---~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~ 328 (470)
T 3p0w_A 263 ALCKGQGHL-VAYA-------EDPCG---PEAGYSGREVMAEFKRATGIPTATNMIATDWRQMGHAVQLHAVDIPLA 328 (470)
T ss_dssp HHHTTCTTT-CSEE-------ESCBC---CBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHTTCCSEEBC
T ss_pred HHHHhcccc-ceee-------cCCCC---hhhccchHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 999988876 6554 22111 223 57789999999999998767889999999999877887754
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.18 Score=48.91 Aligned_cols=132 Identities=13% Similarity=0.082 Sum_probs=85.5
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 89 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNG----------TTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTG-TNDTEKSIQA 89 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHHHHH
Confidence 55667777754 567999998873 234444444555566666665554 589999842 2467889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgV 313 (436)
++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+ +| |---+++.+.++.+...+-||
T Consensus 90 a~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgi 161 (292)
T 3daq_A 90 SIQAKALGADAIMLITPYYNK---TNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVAL 161 (292)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEE
Confidence 999999999999775322110 0001124667788888899986 44 556678888877654334343
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.084 Score=51.74 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=73.0
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCC-ccCHHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKA 280 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g-~ad~~~i~~ 280 (436)
.||..+++.++++++ . .+++||.+|--...+.++....++.+.+.|.+.|++--|... +++.. ..|+..+..
T Consensus 137 IgA~~~~n~~LLr~v----a-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~--y~~~~~~vdl~~i~~ 209 (298)
T 3fs2_A 137 IPAFLCRQTDLLIAA----A-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVS--FGYNTLVSDMRALPI 209 (298)
T ss_dssp ECGGGTTCHHHHHHH----H-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEE--CSSSCEECCTTHHHH
T ss_pred ECccccCCHHHHHHH----H-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCCCccCHHHHHH
Confidence 477888888866553 3 468999999555457788888889999999887766334332 22322 268999999
Q ss_pred HHhhCCCcEEEc---------------cCCCC--HHHHHHHHHhcCcceeeeeh
Q 013813 281 VKNALRIPVLAN---------------GNVRH--MEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 281 ik~~~~iPVian---------------GGI~s--~eda~~~l~~tGaDgVmIGR 317 (436)
+++ .++||++. ||.+. ..-+...+.. ||||++|=.
T Consensus 210 lk~-~~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAl-GAdGl~IE~ 261 (298)
T 3fs2_A 210 MAG-LGAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAV-GVAGFFIET 261 (298)
T ss_dssp HHT-TTSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHH-CCSEEEEEE
T ss_pred HHH-cCCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHc-CCCEEEEEe
Confidence 998 79999983 33221 1234455554 999999863
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.12 Score=50.13 Aligned_cols=126 Identities=13% Similarity=-0.001 Sum_probs=83.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. .-|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~l 88 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVG----------TTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEAISL 88 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHHHHH
Confidence 56667777754 466999998883 234444445566666777666554 489998842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEE 307 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~ 307 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+ +| |---+++.+.++.+.
T Consensus 89 a~~a~~~Gadavlv~~P~y~---~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 154 (292)
T 2ojp_A 89 TQRFNDSGIVGCLTVTPYYN---RPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKV 154 (292)
T ss_dssp HHHTTTSSCSEEEEECCCSS---CCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHTS
T ss_pred HHHHHhcCCCEEEECCCCCC---CCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHcC
Confidence 99999999999977533211 00001124667788888899986 45 334578888887643
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.21 Score=45.39 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=77.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRlg~~~ 238 (436)
|++.+=-.+.++..+.++.+..|+|.|++.. |.. .. +| .++++++++. .++||.+-.-+...
T Consensus 3 li~a~D~~~~~~~~~~~~~~~~~~diie~G~--p~~--~~--~g----------~~~i~~ir~~~~~~~i~~~~~~~~~- 65 (211)
T 3f4w_A 3 LQLALDELTLPEAMVFMDKVVDDVDIIEVGT--PFL--IR--EG----------VNAIKAIKEKYPHKEVLADAKIMDG- 65 (211)
T ss_dssp EEEEECSCCHHHHHHHHHHHGGGCSEEEECH--HHH--HH--HT----------THHHHHHHHHCTTSEEEEEEEECSC-
T ss_pred EEEEeCCCCHHHHHHHHHHhhcCccEEEeCc--HHH--Hh--cc----------HHHHHHHHHhCCCCEEEEEEEeccc-
Confidence 3444444567777777766666789999876 442 11 12 2567777766 47887653222211
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhhCCCcEEEc-cCCCCH-HHHHHHHHhcCcceeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLAN-GNVRHM-EDVQKCLEETGCEGVLS 315 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~~~iPVian-GGI~s~-eda~~~l~~tGaDgVmI 315 (436)
...+++.+.++|+|+|++|+-... .+. +.++.+++ .+++++.. =+..++ +.++.+.+. |+|.|.+
T Consensus 66 --~~~~~~~~~~~Gad~v~v~~~~~~--------~~~~~~~~~~~~-~g~~~~v~~~~~~t~~~~~~~~~~~-g~d~i~v 133 (211)
T 3f4w_A 66 --GHFESQLLFDAGADYVTVLGVTDV--------LTIQSCIRAAKE-AGKQVVVDMICVDDLPARVRLLEEA-GADMLAV 133 (211)
T ss_dssp --HHHHHHHHHHTTCSEEEEETTSCH--------HHHHHHHHHHHH-HTCEEEEECTTCSSHHHHHHHHHHH-TCCEEEE
T ss_pred --hHHHHHHHHhcCCCEEEEeCCCCh--------hHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHc-CCCEEEE
Confidence 123588889999999999976321 122 33444444 36666642 345665 556676665 9999877
Q ss_pred eh
Q 013813 316 AE 317 (436)
Q Consensus 316 GR 317 (436)
..
T Consensus 134 ~~ 135 (211)
T 3f4w_A 134 HT 135 (211)
T ss_dssp EC
T ss_pred cC
Confidence 53
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.08 Score=52.55 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=62.6
Q ss_pred ccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCcc----CHHHHHHHHhhCCCcEEEc--cCCC
Q 013813 223 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA----DWNAIKAVKNALRIPVLAN--GNVR 296 (436)
Q Consensus 223 ~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~a----d~~~i~~ik~~~~iPVian--GGI~ 296 (436)
..+.|+.+.+..+.+.+. +.+.++.+|+|+|.+|.....+.....+.. .++.++.+++.+++||+.- |...
T Consensus 114 ~~~~pv~~~i~~~~~~~~---~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~ 190 (349)
T 1p0k_A 114 NPNGLIFANLGSEATAAQ---AKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGM 190 (349)
T ss_dssp CSSSCEEEEEETTCCHHH---HHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCC
T ss_pred CCCceeEEeecCCCCHHH---HHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 457899988776555443 456677899999999865432211111111 2578999999899999875 5557
Q ss_pred CHHHHHHHHHhcCcceeeee
Q 013813 297 HMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 297 s~eda~~~l~~tGaDgVmIG 316 (436)
+.++++.+.+. |+|+|.+.
T Consensus 191 ~~~~a~~a~~~-Gad~I~v~ 209 (349)
T 1p0k_A 191 SKASAGKLYEA-GAAAVDIG 209 (349)
T ss_dssp CHHHHHHHHHH-TCSEEEEE
T ss_pred CHHHHHHHHHc-CCCEEEEc
Confidence 89999888875 99999884
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.17 Score=52.21 Aligned_cols=124 Identities=13% Similarity=0.115 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHH-Hc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAARR-VE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~~-v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~ 242 (436)
+.+++++++.|+. ++ .||..|-|..|.+ +++.-.+.|+++++.. ++.+.|-..-+++..+++
T Consensus 180 ~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~~~~A~ 244 (450)
T 3mzn_A 180 AMTPEAVANLARAAYDRYGFKDFKLKGGVL---------------RGEEEADCIRALHEAFPEARLALDPNGAWKLDEAV 244 (450)
T ss_dssp BCSHHHHHHHHHHHHHHHCCSEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTCBCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 3578998888864 55 4999999987642 1233345566776665 567777777788999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccC----HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad----~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+++.+++. +.+| ++... +-| ++..+++++.+++||.+.=-+.+..++.++++...+|.+++
T Consensus 245 ~~~~~L~~~-i~~i-------EeP~~---~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~di~~~ 310 (450)
T 3mzn_A 245 RVLEPIKHL-LSYA-------EDPCG---QEGGFSGRETMAEFKKRTGLPTATNMIATDYKQLQYAVQLNSVDIPLA 310 (450)
T ss_dssp HHHGGGGGG-CSEE-------ESSBC---CBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHHHHHHHHHTCCSEEBC
T ss_pred HHHHHhhhc-ccee-------eCCCC---cccccchHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 999999887 6655 22111 123 67789999999999988767889999999999877887754
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.031 Score=54.85 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCccEEEecc-CcccccCCC--CCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 242 IKYAKMLEDAGCSLLAVHG-RTRDEKDGK--KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHg-Rt~~~~~~~--~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+.|+..+++|++.|.+-- .+.+..... ....+.+.++++++.+++||++-+++...++++.+.+ .|||.| -...
T Consensus 31 ~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~a-aGAD~I-d~s~ 108 (297)
T 4adt_A 31 VEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEE-LKVDML-DESE 108 (297)
T ss_dssp HHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHH-TTCSEE-EEET
T ss_pred HHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHH-cCCCEE-EcCC
Confidence 3779999999999998762 212211111 1134789999999999999999988988888888776 599999 3323
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
.+..+.+...++.
T Consensus 109 ~~~~~~li~~i~~ 121 (297)
T 4adt_A 109 VLTMADEYNHINK 121 (297)
T ss_dssp TSCCSCSSCCCCG
T ss_pred CCCHHHHHHHHHh
Confidence 3456677766654
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.34 Score=47.40 Aligned_cols=133 Identities=14% Similarity=0.036 Sum_probs=87.8
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC-CChhhHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-PNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg-~~~~d~~~ 243 (436)
|.+.+.+-++. ++.|+|+|=++. .-|-+..-..+.-.++++.+.+.+ .+||.+- .| .+..++++
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaG--vg~~~t~~ai~ 100 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQG----------SNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAG--SGCESTQATVE 100 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEE--CCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHHHHHHHHHHHHHcCCCCcEEEe--cCCCCHHHHHH
Confidence 55667776754 456999998873 345444455666677888877766 5899887 44 46788999
Q ss_pred HHHHHHHcCccEEEeccCcc-cccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCcceee
Q 013813 244 YAKMLEDAGCSLLAVHGRTR-DEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~-~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++|+|++.+..-.. ..+.. ...-+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||=
T Consensus 101 la~~A~~~Gadavlv~~P~y~~~~~s--~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK 176 (307)
T 3s5o_A 101 MTVSMAQVGADAAMVVTPCYYRGRMS--SAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMX 176 (307)
T ss_dssp HHHHHHHTTCSEEEEECCCTTGGGCC--HHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCCCC--HHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhcCCCEEEEE
Confidence 99999999999997753221 10000 01225667888888899986 44 3345778887776543444443
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.097 Score=50.86 Aligned_cols=126 Identities=17% Similarity=0.121 Sum_probs=79.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. .-|-+..-..+.-.++++.+.+.+ .+||.+.+- +.+..+++++
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg-~~~t~~ai~l 88 (291)
T 3a5f_A 20 DFDKLSELIEWHIKSKTDAIIVCG----------TTGEATTMTETERKETIKFVIDKVNKRIPVIAGTG-SNNTAASIAM 88 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHHHHH
Confidence 56667777754 567999998883 234444445556666777665544 489998842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEE 307 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~ 307 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+ +| |---+++.+.++.+.
T Consensus 89 a~~a~~~Gadavlv~~P~y~---~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 154 (291)
T 3a5f_A 89 SKWAESIGVDGLLVITPYYN---KTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCED 154 (291)
T ss_dssp HHHHHHTTCSEEEEECCCSS---CCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHTTS
T ss_pred HHHHHhcCCCEEEEcCCCCC---CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcC
Confidence 99999999999977532211 00001113445566667788875 44 444577777776543
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.18 Score=48.92 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=85.9
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC-CChhhHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-PNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg-~~~~d~~~ 243 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+. .| .+..++++
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaG--vg~~~t~~ai~ 87 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVG----------TTGEASTLSMEEHTQVIKEIIRVANKRIPIIAG--TGANSTREAIE 87 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE--CCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECc----------cccccccCCHHHHHHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHH
Confidence 56667777754 467999997773 234333344555566776666554 4899988 44 46789999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCcceee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+ +| |---+++.+.++.+..++-||=
T Consensus 88 la~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK 161 (291)
T 3tak_A 88 LTKAAKDLGADAALLVTPYYNK---PTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIK 161 (291)
T ss_dssp HHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 9999999999999775332110 0001125667888888899986 43 5556778877766433444443
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.037 Score=53.58 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+..++|+.+++.|+++|.|.--.. .+.| ..+.++.+++.+++||+..+.|.+..++.++... |||+|.++-+
T Consensus 72 ~~p~~~A~~y~~~GA~~isvltd~~----~f~G--s~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~-GAD~VlLi~a 144 (272)
T 3qja_A 72 ADPAKLAQAYQDGGARIVSVVTEQR----RFQG--SLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAH-GADMLLLIVA 144 (272)
T ss_dssp -CHHHHHHHHHHTTCSEEEEECCGG----GHHH--HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHT-TCSEEEEEGG
T ss_pred CCHHHHHHHHHHcCCCEEEEecChh----hcCC--CHHHHHHHHHhCCCCEEECccccCHHHHHHHHHc-CCCEEEEecc
Confidence 4678899999999999998752211 0111 3577899999999999999999999999998875 9999999988
Q ss_pred HhhCCc
Q 013813 319 LLENPA 324 (436)
Q Consensus 319 al~nP~ 324 (436)
.+.+..
T Consensus 145 ~l~~~~ 150 (272)
T 3qja_A 145 ALEQSV 150 (272)
T ss_dssp GSCHHH
T ss_pred cCCHHH
Confidence 776443
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.08 Score=51.60 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=59.0
Q ss_pred HHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEE
Q 013813 215 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 290 (436)
Q Consensus 215 eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVi 290 (436)
+.++.+++..+ ++|.|=++ +.++ ++.+.++|+|+|.++.-+. +.++++.+.+ ++|++
T Consensus 184 ~av~~ar~~~~~~~~IgVev~---t~ee----a~eA~~aGaD~I~ld~~~~------------~~~k~av~~v~~~ipi~ 244 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEVEVR---SLEE----LEEALEAGADLILLDNFPL------------EALREAVRRVGGRVPLE 244 (286)
T ss_dssp HHHHHHHHHSCTTSCEEEEES---SHHH----HHHHHHHTCSEEEEESCCH------------HHHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHhCCCCCEEEEEeC---CHHH----HHHHHHcCCCEEEECCCCH------------HHHHHHHHHhCCCCeEE
Confidence 34555555542 34555321 2233 4455678999998876432 2344444433 69999
Q ss_pred EccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 291 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 291 anGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+.|||+ .+.+.++.+ +|+|+|.+|.....-|++
T Consensus 245 AsGGIt-~eni~~~a~-tGvD~IsVgs~~~~a~~~ 277 (286)
T 1x1o_A 245 ASGNMT-LERAKAAAE-AGVDYVSVGALTHSAKAL 277 (286)
T ss_dssp EESSCC-HHHHHHHHH-HTCSEEECTHHHHSCCCC
T ss_pred EEcCCC-HHHHHHHHH-cCCCEEEEcHHHcCCCce
Confidence 999996 899999887 599999998766655553
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.66 Score=42.76 Aligned_cols=173 Identities=14% Similarity=0.028 Sum_probs=98.3
Q ss_pred CCCCcHHHHHHHHHhCCCeEEeCcc-cchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHHHHHHHcCCCcEEEE
Q 013813 111 VDNSELPFRMLCRRYGAEAAYTPML-HSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 111 ~gvtd~~fR~l~~~~Ga~l~~Temi-sa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~AA~~v~~g~D~IdL 188 (436)
-|.|+..=-..+.+.|+|++---+. .+..... ........... +.....|-++- .+++.+.+.++. .+.|.|.|
T Consensus 6 CGit~~eda~~a~~~GaD~iGfif~~~SpR~V~-~~~a~~i~~~~-~~~~~~VgVfvn~~~~~i~~~~~~--~~ld~vQL 81 (203)
T 1v5x_A 6 CGITRLEDALLAEALGAFALGFVLAPGSRRRIA-PEAARAIGEAL-GPFVVRVGVFRDQPPEEVLRLMEE--ARLQVAQL 81 (203)
T ss_dssp CCCCCHHHHHHHHHHTCSEEEEECCTTCTTBCC-HHHHHHHHHHS-CSSSEEEEEESSCCHHHHHHHHHH--TTCSEEEE
T ss_pred cCCCcHHHHHHHHHcCCCEEEEEecCCCCCcCC-HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh--hCCCEEEE
Confidence 3566665557788899986432232 1211111 11111111111 22334455555 456665555543 36799999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
|- . .+++.+.++ .. ++|+.--++.... .+ + .+.+..+|++.+.... +
T Consensus 82 HG-------------~---e~~~~~~~l----~~--~~~vika~~v~~~-~~---l--~~~~~~~d~~LlD~~~-----g 128 (203)
T 1v5x_A 82 HG-------------E---EPPEWAEAV----GR--FYPVIKAFPLEGP-AR---P--EWADYPAQALLLDGKR-----P 128 (203)
T ss_dssp CS-------------C---CCHHHHHHH----TT--TSCEEEEEECSSS-CC---G--GGGGSSCSEEEEECSS-----T
T ss_pred CC-------------C---CCHHHHHHh----cc--CCCEEEEEEcCCh-Hh---h--hhhhcCCCEEEEcCCC-----C
Confidence 92 1 245555443 21 5777766666432 11 1 1233338999886543 1
Q ss_pred CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 269 KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 269 ~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++| ..||+.++.+. ..+.|++..||++ ++.+.+++ ..++.||=+.+|.-..|
T Consensus 129 GtG~~fdW~~l~~~~-~~~~p~~LAGGL~-peNV~~ai-~~~p~gVDvsSGvE~~p 181 (203)
T 1v5x_A 129 GSGEAYPRAWAKPLL-ATGRRVILAGGIA-PENLEEVL-ALRPYALDLASGVEEAP 181 (203)
T ss_dssp TSCCCCCGGGGHHHH-HTTSCEEECSSCC-STTHHHHH-HHCCSEEEESGGGEEET
T ss_pred CCCCccCHHHHHhhh-ccCCcEEEECCCC-HHHHHHHH-hcCCCEEEeCCceecCC
Confidence 222 57999887632 2468999999995 67887777 56999999998875444
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.046 Score=55.81 Aligned_cols=67 Identities=25% Similarity=0.442 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+.++.+.++|+|.|.+..-.. .+ ...++.++.+++..++||++ |+|.|.++++.+.+. |||+|.+|
T Consensus 146 ~e~~~~lveaGvdvIvldta~G-----~~-~~~~e~I~~ik~~~~i~Vi~-g~V~t~e~A~~a~~a-GAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHG-----HS-LNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIEN-GADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCC-----SB-HHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHHHT-TCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCC-----Cc-ccHHHHHHHHHhcCCCeEEE-eecCCHHHHHHHHHc-CCCEEEEe
Confidence 5678889999999998732111 10 12257788998888899886 789999999998886 99999996
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.2 Score=49.25 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=85.4
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC-CChhhHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-PNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg-~~~~d~~~ 243 (436)
|.+.+.+-++ +++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+. .| .+..++++
T Consensus 26 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaG--vg~~~t~~ai~ 93 (311)
T 3h5d_A 26 NFDAIPALIEHLLAHHTDGILLAG----------TTAESPTLTHDEELELFAAVQKVVNGRVPLIAG--VGTNDTRDSIE 93 (311)
T ss_dssp CTTHHHHHHHHHHHTTCCCEEESS----------TTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEE--CCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEe--CCCcCHHHHHH
Confidence 4455666665 4567999999883 234444445666677777776665 5899998 44 36788999
Q ss_pred HHHHHHHcCc-cEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCcce
Q 013813 244 YAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 244 ~ak~le~aG~-d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDg 312 (436)
+++.++++|+ |++.+..-.... .. ...-+++.+.|.+.+++||+ +| |---+++.+.++.+..++-|
T Consensus 94 la~~A~~~Ga~davlv~~P~y~~-~s--~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvg 166 (311)
T 3h5d_A 94 FVKEVAEFGGFAAGLAIVPYYNK-PS--QEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADHPNIIG 166 (311)
T ss_dssp HHHHHHHSCCCSEEEEECCCSSC-CC--HHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEE
T ss_pred HHHHHHhcCCCcEEEEcCCCCCC-CC--HHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEE
Confidence 9999999996 999775432110 00 01124667888888899986 44 55567788777665433333
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.11 Score=51.11 Aligned_cols=95 Identities=12% Similarity=0.176 Sum_probs=70.4
Q ss_pred CChHHHHHHHHHHhcccCccEEEEeccCCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 285 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~ 285 (436)
..++.+.+.++.+++.++.|+.|-+-.... ..+..+.++.+.++|++.|++|+.. + ++.++.+++.
T Consensus 50 ~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~---------p--~~~~~~l~~~- 117 (328)
T 2gjl_A 50 PSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND---------P--GEHIAEFRRH- 117 (328)
T ss_dssp SSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESC---------C--HHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCC---------c--HHHHHHHHHc-
Confidence 357888888998887777787776544310 2334567788889999999998531 1 5677888775
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeee-eh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLS-AE 317 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmI-GR 317 (436)
++||+. .+.+.+++..+.+. |+|+|.+ |.
T Consensus 118 gi~vi~--~v~t~~~a~~~~~~-GaD~i~v~g~ 147 (328)
T 2gjl_A 118 GVKVIH--KCTAVRHALKAERL-GVDAVSIDGF 147 (328)
T ss_dssp TCEEEE--EESSHHHHHHHHHT-TCSEEEEECT
T ss_pred CCCEEe--eCCCHHHHHHHHHc-CCCEEEEECC
Confidence 888884 48999999988875 9999998 53
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.023 Score=55.73 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=58.5
Q ss_pred HHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-----CC
Q 013813 215 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RI 287 (436)
Q Consensus 215 eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-----~i 287 (436)
+-++++++..+ +++.+=+. +.++ ++.+.++|+|+|-++.- +.+.++++++.+ ++
T Consensus 185 ~ai~~~r~~~~~~~~i~vev~---tlee----~~~A~~aGaD~I~ld~~------------~~~~l~~~v~~l~~~~~~~ 245 (299)
T 2jbm_A 185 KAVRAARQAADFALKVEVECS---SLQE----AVQAAEAGADLVLLDNF------------KPEELHPTATVLKAQFPSV 245 (299)
T ss_dssp HHHHHHHHHHTTTSCEEEEES---SHHH----HHHHHHTTCSEEEEESC------------CHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhCCcCCeEEEecC---CHHH----HHHHHHcCCCEEEECCC------------CHHHHHHHHHHhhccCCCe
Confidence 44555555443 34555322 2233 33445689999988641 134455444333 49
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
||.++||| +.+.+.++++ +|+|++.+|......|++
T Consensus 246 ~I~ASGGI-t~~ni~~~~~-aGaD~i~vGs~i~~a~~~ 281 (299)
T 2jbm_A 246 AVEASGGI-TLDNLPQFCG-PHIDVISMGMLTQAAPAL 281 (299)
T ss_dssp EEEEESSC-CTTTHHHHCC-TTCCEEECTHHHHSCCCC
T ss_pred eEEEECCC-CHHHHHHHHH-CCCCEEEEChhhcCCCCc
Confidence 99999999 8899999887 599999999977665665
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.039 Score=55.37 Aligned_cols=43 Identities=19% Similarity=0.534 Sum_probs=37.4
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
...|+.++.+++.+++||+.-| |.+.++++.+.+. |+|+|.+.
T Consensus 203 ~~~w~~i~~lr~~~~~PvivK~-v~~~e~A~~a~~~-GaD~I~vs 245 (352)
T 3sgz_A 203 SFCWNDLSLLQSITRLPIILKG-ILTKEDAELAMKH-NVQGIVVS 245 (352)
T ss_dssp TCCHHHHHHHHHHCCSCEEEEE-ECSHHHHHHHHHT-TCSEEEEC
T ss_pred CCCHHHHHHHHHhcCCCEEEEe-cCcHHHHHHHHHc-CCCEEEEe
Confidence 4689999999999999998765 6889999998886 99999874
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.34 Score=47.55 Aligned_cols=131 Identities=12% Similarity=0.098 Sum_probs=86.7
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC-CChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg-~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+. .| .+..+++++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Lt~~Er~~v~~~~v~~~grvpViaG--vg~~~t~~ai~l 94 (313)
T 3dz1_A 27 DDVSIDRLTDFYAEVGCEGVTVLG----------ILGEAPKLDAAEAEAVATRFIKRAKSMQVIVG--VSAPGFAAMRRL 94 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEST----------GGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEE--CCCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCc----------cCcChhhCCHHHHHHHHHHHHHHcCCCcEEEe--cCCCCHHHHHHH
Confidence 56777777754 577999998873 234444445555566666665554 5899988 44 467899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEE------ccCCCCHHHHHHHHHh-cCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLA------NGNVRHMEDVQKCLEE-TGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVia------nGGI~s~eda~~~l~~-tGaDgVm 314 (436)
++.++++|+|++.+..-... .+...-+++.+.|.+.++ +||+. .|---+++.+.++.+. .++-||=
T Consensus 95 a~~A~~~Gadavlv~~P~~~----~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK 169 (313)
T 3dz1_A 95 ARLSMDAGAAGVMIAPPPSL----RTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASCVMLK 169 (313)
T ss_dssp HHHHHHHTCSEEEECCCTTC----CSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHcCCCEEEECCCCCC----CCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEE
Confidence 99999999999987532211 111122566788888887 99875 3555678888887743 3444443
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.21 Score=46.07 Aligned_cols=130 Identities=14% Similarity=0.091 Sum_probs=81.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccE--EEEecc
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPV--SCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPV--sVKiRl 234 (436)
.++++.+=-.+.++..+.++.+..|+|.+|+.+ |.. .. +| .++++++++.. +.|+ .+|+
T Consensus 7 ~~lilalD~~~~~~~~~~~~~~~~~vd~ie~g~--~~~--~~--~G----------~~~i~~lr~~~~~~~i~ld~~l-- 68 (218)
T 3jr2_A 7 PMIQIALDQTNLTDAVAVASNVASYVDVIEVGT--ILA--FA--EG----------MKAVSTLRHNHPNHILVCDMKT-- 68 (218)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHGGGCSEEEECH--HHH--HH--HT----------THHHHHHHHHCTTSEEEEEEEE--
T ss_pred CCeEEEeCCCCHHHHHHHHHHhcCCceEEEeCc--HHH--Hh--cC----------HHHHHHHHHhCCCCcEEEEEee--
Confidence 346777766778888888877767899999885 211 01 12 24667776653 4444 5664
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE-ccCCCCHHHHHHHHHhcCccee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-NGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia-nGGI~s~eda~~~l~~tGaDgV 313 (436)
... ...+++.+.++|+|+|++|+-.... .--+.++.+++. ++.+.. .=|+.|.+++.++.+. |+|.+
T Consensus 69 ~d~---p~~~~~~~~~aGad~i~vh~~~~~~-------~~~~~~~~~~~~-g~~~~~d~l~~~T~~~~~~~~~~-g~d~v 136 (218)
T 3jr2_A 69 TDG---GAILSRMAFEAGADWITVSAAAHIA-------TIAACKKVADEL-NGEIQIEIYGNWTMQDAKAWVDL-GITQA 136 (218)
T ss_dssp CSC---HHHHHHHHHHHTCSEEEEETTSCHH-------HHHHHHHHHHHH-TCEEEEECCSSCCHHHHHHHHHT-TCCEE
T ss_pred ccc---HHHHHHHHHhcCCCEEEEecCCCHH-------HHHHHHHHHHHh-CCccceeeeecCCHHHHHHHHHc-Cccce
Confidence 222 2346788999999999999754211 001334445443 665553 4445688888888776 99987
Q ss_pred eeeh
Q 013813 314 LSAE 317 (436)
Q Consensus 314 mIGR 317 (436)
.+..
T Consensus 137 ~~~~ 140 (218)
T 3jr2_A 137 IYHR 140 (218)
T ss_dssp EEEC
T ss_pred eeee
Confidence 6643
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=1.2 Score=43.08 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=93.6
Q ss_pred CCC-EEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEec
Q 013813 157 DRP-LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 233 (436)
Q Consensus 157 e~p-livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiR 233 (436)
++| ++|.|.+.+.+++...++.+. .|+|.||+=+.+= .. ..+.+.+.+.+..+++.+ ++|+.+=+|
T Consensus 38 g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l---------~~--~~~~~~v~~~l~~lr~~~~~~PiI~T~R 106 (276)
T 3o1n_A 38 GAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHF---------AN--VTTAESVLEAAGAIREIITDKPLLFTFR 106 (276)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGC---------TT--TTCHHHHHHHHHHHHHHCCSSCEEEECC
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccc---------cc--cCcHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 445 669999999999998888776 6999999976421 10 123477888999998887 799999888
Q ss_pred c----CC---ChhhHHHHHHHHHHcC-ccEEEeccCcccccCCCCCccCHHHHHHHH---hhCCCcEEEc----cCCCCH
Q 013813 234 V----FP---NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVK---NALRIPVLAN----GNVRHM 298 (436)
Q Consensus 234 l----g~---~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik---~~~~iPVian----GGI~s~ 298 (436)
. |. +.++-.++.+.+.+.| +++|.|--... -+.++++. +..++.||++ .+--+.
T Consensus 107 t~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~-----------~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~ 175 (276)
T 3o1n_A 107 SAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTG-----------DDEVKATVGYAHQHNVAVIMSNHDFHKTPAA 175 (276)
T ss_dssp BGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGC-----------HHHHHHHHHHHHHTTCEEEEEEEESSCCCCH
T ss_pred EhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCC-----------HHHHHHHHHHHHhCCCEEEEEeecCCCCcCH
Confidence 7 21 3345567778788889 99998853221 13344443 2347788875 334445
Q ss_pred HHHHHHHH---hcCcceeeee
Q 013813 299 EDVQKCLE---ETGCEGVLSA 316 (436)
Q Consensus 299 eda~~~l~---~tGaDgVmIG 316 (436)
+++.+.++ ..|||.|=|+
T Consensus 176 ~el~~~~~~~~~~GaDIvKia 196 (276)
T 3o1n_A 176 EEIVQRLRKMQELGADIPKIA 196 (276)
T ss_dssp HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 55555443 3588877555
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.26 Score=44.63 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=75.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~ 238 (436)
+++-+-..+.++..+.++.+..|+|.|+++++. . .. +| + ++++.+++.. +.|+.+-+-.. +.
T Consensus 3 li~a~d~~~~~~~~~~~~~~~~~v~~iev~~~~--~--~~--~g------~----~~i~~l~~~~~~~~i~~~l~~~-di 65 (207)
T 3ajx_A 3 LQVAIDLLSTEAALELAGKVAEYVDIIELGTPL--I--KA--EG------L----SVITAVKKAHPDKIVFADMKTM-DA 65 (207)
T ss_dssp EEEEECCSCHHHHHHHHHHHGGGCSEEEECHHH--H--HH--HC------T----HHHHHHHHHSTTSEEEEEEEEC-SC
T ss_pred EEEEeCCCCHHHHHHHHHHhhccCCEEEECcHH--H--Hh--hC------H----HHHHHHHHhCCCCeEEEEEEec-Cc
Confidence 566666678888888887776688999996532 1 11 12 2 3566666665 77887632232 21
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhhCCCcE-EEccCCCCHHH-HHHHHHhcCcceeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPV-LANGNVRHMED-VQKCLEETGCEGVLS 315 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~~~iPV-ianGGI~s~ed-a~~~l~~tGaDgVmI 315 (436)
...+++.+.++|+|+|++|.-.... .. +.++.+++ .++++ +..-...++++ ++.+.+ .|+|.|-+
T Consensus 66 --~~~~~~~a~~~Gad~v~vh~~~~~~--------~~~~~~~~~~~-~g~~~gv~~~s~~~p~~~~~~~~~-~g~d~v~~ 133 (207)
T 3ajx_A 66 --GELEADIAFKAGADLVTVLGSADDS--------TIAGAVKAAQA-HNKGVVVDLIGIEDKATRAQEVRA-LGAKFVEM 133 (207)
T ss_dssp --HHHHHHHHHHTTCSEEEEETTSCHH--------HHHHHHHHHHH-HTCEEEEECTTCSSHHHHHHHHHH-TTCSEEEE
T ss_pred --cHHHHHHHHhCCCCEEEEeccCChH--------HHHHHHHHHHH-cCCceEEEEecCCChHHHHHHHHH-hCCCEEEE
Confidence 2336788889999999999754311 11 22233333 25555 21224446666 444444 48999844
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
.
T Consensus 134 ~ 134 (207)
T 3ajx_A 134 H 134 (207)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.12 Score=50.67 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=74.9
Q ss_pred cCCCcEEE----EecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEE--e--ccC------CChhhHHHHH
Q 013813 180 EPYCDYVD----INLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK--I--RVF------PNLQDTIKYA 245 (436)
Q Consensus 180 ~~g~D~Id----LN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVK--i--Rlg------~~~~d~~~~a 245 (436)
+-|+|+|- +|.|.|.. ....+.+.++++++. ..++|+.+= + |.| .+.+.....+
T Consensus 139 rlGADaV~~l~~i~~Gs~~e-----------~~~l~~la~vv~ea~-~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aa 206 (307)
T 3fok_A 139 DRGVDFAKTLVRINLSDAGT-----------APTLEATAHAVNEAA-AAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSV 206 (307)
T ss_dssp HHTCCEEEEEEEECTTCTTH-----------HHHHHHHHHHHHHHH-HTTCCEEEEEEEEEEETTEEEECCSHHHHHHHH
T ss_pred HCCCCEEEEEEEECCCChhH-----------HHHHHHHHHHHHHHH-HcCCcEEEEeeccccCCCCcCCCCCHHHHHHHH
Confidence 34888866 67777653 112355666666654 448887764 1 322 2334455667
Q ss_pred HHHHHcCcc----EEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC--CHHHHHHHHHh----cCcceeee
Q 013813 246 KMLEDAGCS----LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR--HMEDVQKCLEE----TGCEGVLS 315 (436)
Q Consensus 246 k~le~aG~d----~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~--s~eda~~~l~~----tGaDgVmI 315 (436)
+...+.|+| .|-+- ++ +.++++.+...+||+..||=. +.+++.+..+. .|+.||.+
T Consensus 207 RiAaELGADs~~tivK~~---------y~-----e~f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~v 272 (307)
T 3fok_A 207 AIAAGLGNDSSYTWMKLP---------VV-----EEMERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTV 272 (307)
T ss_dssp HHHHTCSSCCSSEEEEEE---------CC-----TTHHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEE
T ss_pred HHHHHhCCCcCCCEEEeC---------Cc-----HHHHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEee
Confidence 788999999 77551 11 235788888899998888766 45666554432 49999999
Q ss_pred ehHHhh
Q 013813 316 AESLLE 321 (436)
Q Consensus 316 GRgal~ 321 (436)
||-++.
T Consensus 273 GRNIfQ 278 (307)
T 3fok_A 273 GRTLLY 278 (307)
T ss_dssp CTTTSS
T ss_pred chhhcc
Confidence 998776
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.083 Score=53.55 Aligned_cols=128 Identities=11% Similarity=0.009 Sum_probs=90.3
Q ss_pred HHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHH
Q 013813 169 PEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYA 245 (436)
Q Consensus 169 ~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~a 245 (436)
++++++.| +.++.||..|-+..|.+.. +-. -..+++.-.+.++++++.+ ++.+.|...-+|+.++++.++
T Consensus 149 ~e~~~~~a~~~~~~Gf~~~KlKvg~~~~------~~~-~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~ 221 (392)
T 3v5c_A 149 VALMQEEAMQGYAKGQRHFKIKVGRGGR------HMP-LWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVL 221 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCTTTT------TSC-HHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCc------ccc-ccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHH
Confidence 45656555 4567899999999875321 000 0012455566778888865 578888888889999999999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.+++.++.+| ++. . +.|++..+++++. ..+||...=.+. ..++.++++...+|.|++
T Consensus 222 ~~L~~~~l~~i-------EeP--~--~~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~ 284 (392)
T 3v5c_A 222 AALSDVNLYWL-------EAA--F--HEDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRGRVDVLQY 284 (392)
T ss_dssp HHTTTSCCCEE-------ECS--S--SCCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTTSCCEECC
T ss_pred HhcccCCCeEE-------eCC--C--CcCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcCCCcEEEe
Confidence 99999988776 221 1 2367777888775 578877766777 788999998867888765
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.11 Score=50.68 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=80.4
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+.+-. .+..+++++
T Consensus 23 D~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~l 91 (300)
T 3eb2_A 23 RADVMGRLCDDLIQAGVHGLTPLG----------STGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAS-TSVADAVAQ 91 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSCBBTTS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEE-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHH
Confidence 56667777754 567999986652 234444445555566777666554 5799888432 466899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 306 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~ 306 (436)
++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+ +| |---+++.+.++.+
T Consensus 92 a~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 156 (300)
T 3eb2_A 92 AKLYEKLGADGILAILEAYFP---LKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAE 156 (300)
T ss_dssp HHHHHHHTCSEEEEEECCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHHc
Confidence 999999999999775332110 0001124667788888889975 44 33356777776643
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.076 Score=48.84 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=63.8
Q ss_pred CccEEEEeccCC---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE-------ccC
Q 013813 225 NVPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-------NGN 294 (436)
Q Consensus 225 ~iPVsVKiRlg~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia-------nGG 294 (436)
++-|+|-...+. +.+.+.++++.++++|+++|.+. ..+.++.+++.+++|+++ .++
T Consensus 6 ~~~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~--------------~~~~i~~i~~~~~~pv~~~~~~~~~~~~ 71 (223)
T 1y0e_A 6 GLIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRAN--------------TKEDILAIKETVDLPVIGIVKRDYDHSD 71 (223)
T ss_dssp EEEEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEE--------------SHHHHHHHHHHCCSCEEEECBCCCTTCC
T ss_pred CeEEEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccC--------------CHHHHHHHHHhcCCCEEeeeccCCCccc
Confidence 345666654443 34577889999999999998652 136789999999999974 445
Q ss_pred C---CCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 295 V---RHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 295 I---~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
+ .+.+++..+++. |+|.|.++..+..+|
T Consensus 72 ~~i~~~~~~i~~~~~~-Gad~v~l~~~~~~~p 102 (223)
T 1y0e_A 72 VFITATSKEVDELIES-QCEVIALDATLQQRP 102 (223)
T ss_dssp CCBSCSHHHHHHHHHH-TCSEEEEECSCSCCS
T ss_pred cccCCcHHHHHHHHhC-CCCEEEEeeecccCc
Confidence 5 567888888875 999999998887777
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.21 Score=48.20 Aligned_cols=108 Identities=14% Similarity=0.219 Sum_probs=67.1
Q ss_pred HHHHHH-HHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHH
Q 013813 169 PEILLN-AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 247 (436)
Q Consensus 169 ~e~~~~-AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~ 247 (436)
.+...+ |.+.+++|+|.||||++.+ ....++.+..+|+++++.+++|++|-.. + .+.++.
T Consensus 33 ~~~a~~~a~~~v~~GAdiIDIg~~s~------------~~eE~~rv~~vi~~l~~~~~~pisIDT~------~-~~v~~a 93 (271)
T 2yci_X 33 PRPIQEWARRQAEKGAHYLDVNTGPT------------ADDPVRVMEWLVKTIQEVVDLPCCLDST------N-PDAIEA 93 (271)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEECCSC------------SSCHHHHHHHHHHHHHHHCCCCEEEECS------C-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCcC------------chhHHHHHHHHHHHHHHhCCCeEEEeCC------C-HHHHHH
Confidence 344444 4456788999999997663 2346788999999999888999999832 1 234455
Q ss_pred HHHc--CccEEE-eccCcccccCCCCCccCHHHHHHHHhhCCCcEEE-----ccCCCCHHHHHHHH
Q 013813 248 LEDA--GCSLLA-VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-----NGNVRHMEDVQKCL 305 (436)
Q Consensus 248 le~a--G~d~I~-VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia-----nGGI~s~eda~~~l 305 (436)
+.++ |++.|. |.+-. + +|+.+..+....+.||++ .|--.|.++..+.+
T Consensus 94 al~a~~Ga~iINdvs~~~-d---------~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l 149 (271)
T 2yci_X 94 GLKVHRGHAMINSTSADQ-W---------KMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLA 149 (271)
T ss_dssp HHHHCCSCCEEEEECSCH-H---------HHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHH
T ss_pred HHHhCCCCCEEEECCCCc-c---------ccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHH
Confidence 5555 888874 55431 1 123344444455778876 23334544444433
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.12 Score=50.99 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
+++.+.+.++.+++.++.|+.|.+-.. ..+..+.++.+.+.|++.|.+|+.. + .+.++.+++ .+++
T Consensus 61 ~~~~l~~~i~~i~~~~~~p~gVnl~~~--~~~~~~~~~~~~~~g~d~V~l~~g~---------p--~~~~~~l~~-~g~~ 126 (326)
T 3bo9_A 61 KPDDLRKAISELRQKTDKPFGVNIILV--SPWADDLVKVCIEEKVPVVTFGAGN---------P--TKYIRELKE-NGTK 126 (326)
T ss_dssp CHHHHHHHHHHHHTTCSSCEEEEEETT--STTHHHHHHHHHHTTCSEEEEESSC---------C--HHHHHHHHH-TTCE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEecc--CCCHHHHHHHHHHCCCCEEEECCCC---------c--HHHHHHHHH-cCCc
Confidence 688899999999988888998885441 1234566777889999999998652 1 255677765 4788
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
|+. +|.+.+++..+.+. |+|+|.+
T Consensus 127 v~~--~v~s~~~a~~a~~~-GaD~i~v 150 (326)
T 3bo9_A 127 VIP--VVASDSLARMVERA-GADAVIA 150 (326)
T ss_dssp EEE--EESSHHHHHHHHHT-TCSCEEE
T ss_pred EEE--EcCCHHHHHHHHHc-CCCEEEE
Confidence 875 68999999988875 9999988
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.034 Score=57.77 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
...+.++.+.++|+|.|.+++-. +. ....|+.++.+++.. ++||+ .|+|.+.+++..+++. |+|+|.+|.|
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a~-----g~-~~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~-Gad~I~vg~g 304 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTAH-----GH-SAGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDA-GVDVVKVGIG 304 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCSC-----TT-CHHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHT-TCSEEEECSS
T ss_pred hHHHHHHHHHHcCCCeEEEeeec-----Cc-chhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHc-CCCEEEECcc
Confidence 34567888899999999998721 11 123478899999987 89999 8999999999999886 9999998853
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.25 Score=49.11 Aligned_cols=134 Identities=18% Similarity=0.147 Sum_probs=76.5
Q ss_pred HHHcCCCcEEEEecCCCchhhhcCccccccc-----CChHHHHHHHHHHhcccCccEEEEe--cc---CCC--hh-----
Q 013813 177 RRVEPYCDYVDINLGCPQRIARRGNYGAFLM-----DNLPLVKSLVEKLALNLNVPVSCKI--RV---FPN--LQ----- 239 (436)
Q Consensus 177 ~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll-----~~p~~v~eIv~av~~~~~iPVsVKi--Rl---g~~--~~----- 239 (436)
++++.|+|+|-+.+- ||+.-- .....+.++.++++ ..++|+.+=+ +. +.. .+
T Consensus 118 ~a~~~GADAVk~lv~----------~g~d~~~e~~~~q~~~l~rv~~ec~-~~GiPlllEil~y~~~~~~~~~~~~a~~~ 186 (332)
T 3iv3_A 118 RLKEAGADAVKFLLY----------YDVDGDPQVNVQKQAYIERIGSECQ-AEDIPFFLEILTYDETISNNSSVEFAKVK 186 (332)
T ss_dssp HHHHTTCSEEEEEEE----------ECTTSCHHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEECBTTBSCTTSHHHHTTH
T ss_pred HHHHcCCCEEEEEEE----------cCCCchHHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCCCCCcchhhhccC
Confidence 345679999887641 332100 11234555555543 4489988744 22 111 11
Q ss_pred --hHHHHHHHH--HHcCccEEEecc-Ccc---cccC----CCCCccCHHHHHHHHhhCCCcEE-EccCCCCHHHHHHHHH
Q 013813 240 --DTIKYAKML--EDAGCSLLAVHG-RTR---DEKD----GKKFRADWNAIKAVKNALRIPVL-ANGNVRHMEDVQKCLE 306 (436)
Q Consensus 240 --d~~~~ak~l--e~aG~d~I~VHg-Rt~---~~~~----~~~g~ad~~~i~~ik~~~~iPVi-anGGI~s~eda~~~l~ 306 (436)
.....++.+ .+.|+|.+-+-- ... ++.. -|+..-..+.++++.+...+|+| .+||+ +.++..++++
T Consensus 187 p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~-~~~~fl~~v~ 265 (332)
T 3iv3_A 187 VHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGV-SAELFQETLV 265 (332)
T ss_dssp HHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCC-CHHHHHHHHH
Confidence 145567777 577999997741 111 0000 01101112346677777899965 79998 5666666553
Q ss_pred h---cCc--ceeeeehHHhhC
Q 013813 307 E---TGC--EGVLSAESLLEN 322 (436)
Q Consensus 307 ~---tGa--DgVmIGRgal~n 322 (436)
. .|+ .||.+||....+
T Consensus 266 ~A~~aGa~f~Gv~~GRnvwq~ 286 (332)
T 3iv3_A 266 FAHKAGAKFNGVLCGRATWAG 286 (332)
T ss_dssp HHHHHTCCCCEEEECHHHHTT
T ss_pred HHHHcCCCcceEEeeHHHHHh
Confidence 2 488 999999998776
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.6 Score=45.15 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=76.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
+.|+ +-+...|.-. |+++ +.|+|.| + .|....++.-| |-.-+.-..+.+...+++|++.+ ..||++-+-.
T Consensus 28 g~~i-~m~tayDa~s----A~l~e~aG~d~i-l-vGdSl~~~~lG-~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pf 99 (275)
T 3vav_A 28 GEKI-AMLTCYDASF----AALLDRANVDVQ-L-IGDSLGNVLQG-QTTTLPVTLDDIAYHTACVARAQPRALIVADLPF 99 (275)
T ss_dssp TCCE-EEEECCSHHH----HHHHHHTTCSEE-E-ECTTHHHHTTC-CSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCT
T ss_pred CCcE-EEEeCcCHHH----HHHHHHcCCCEE-E-ECcHHHHHHcC-CCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCC
Confidence 3444 4566666543 4445 4599999 4 33333333333 44444445677777788888887 4899999887
Q ss_pred C--CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc
Q 013813 235 F--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 292 (436)
Q Consensus 235 g--~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian 292 (436)
| .+.+++.+-+..+.++|+++|.+-+... -.+.|+.+.+ .+|||++.
T Consensus 100 gsY~s~~~a~~~a~rl~kaGa~aVklEdg~~----------~~~~i~~l~~-~GIpv~gH 148 (275)
T 3vav_A 100 GTYGTPADAFASAVKLMRAGAQMVKFEGGEW----------LAETVRFLVE-RAVPVCAH 148 (275)
T ss_dssp TSCSSHHHHHHHHHHHHHTTCSEEEEECCGG----------GHHHHHHHHH-TTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCchh----------HHHHHHHHHH-CCCCEEEe
Confidence 5 3566777778888888999999876521 1356777765 48999864
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.15 Score=49.64 Aligned_cols=106 Identities=18% Similarity=0.230 Sum_probs=71.4
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc------cEEEe-ccCcccccCCCCC-cc
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC------SLLAV-HGRTRDEKDGKKF-RA 273 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~------d~I~V-HgRt~~~~~~~~g-~a 273 (436)
.||..+++.+++++ +. .+++||.+|--...+.++....++.+.+.|. +.|++ |..+ . +++.. ..
T Consensus 113 IgA~~~~n~~LLr~----~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~-~--y~~~~~~v 184 (288)
T 3tml_A 113 TPAFLCRQTDFIHA----CA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGV-S--FGYNNLVS 184 (288)
T ss_dssp ECGGGTTCHHHHHH----HH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCE-E--CSSSCEEC
T ss_pred ECcccccCHHHHHH----HH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCC-C--CCCCcCcC
Confidence 47888899886554 33 5689999995554567788888888888887 55654 5443 2 22321 25
Q ss_pred CHHHHHHHHhhCCCcEEEc---------------cCCCCH--HHHHHHHHhcCcceeeeeh
Q 013813 274 DWNAIKAVKNALRIPVLAN---------------GNVRHM--EDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 274 d~~~i~~ik~~~~iPVian---------------GGI~s~--eda~~~l~~tGaDgVmIGR 317 (436)
|+..+..+++ .++||++. ||-+.. .-+...+.. ||||++|=.
T Consensus 185 dl~~i~~lk~-~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~-GadGl~iE~ 243 (288)
T 3tml_A 185 DMRSLAIMRE-TNAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVAT-GVAGLFMET 243 (288)
T ss_dssp CHHHHHHGGG-GSSCEEEEHHHHTCCCC--------CTTHHHHHHHHHHHH-CCSEEEEEE
T ss_pred CHHHHHHHHh-cCCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHc-CCCEEEEee
Confidence 8999999988 89999883 443332 234455554 999999863
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.51 Score=46.41 Aligned_cols=134 Identities=11% Similarity=-0.006 Sum_probs=86.3
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC-CChhhHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-PNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg-~~~~d~~~ 243 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+. .| .+..++++
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaG--vg~~~t~~ai~ 97 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILG----------TNAEAFLLTREERAQLIATARKAVGPDFPIMAG--VGAHSTRQVLE 97 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEE--CCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEe--CCCCCHHHHHH
Confidence 56667777754 467999998883 234444445566667777666655 5899998 44 46789999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCC-CCHHHHHHHHH-hcCcceee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNV-RHMEDVQKCLE-ETGCEGVL 314 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI-~s~eda~~~l~-~tGaDgVm 314 (436)
+++.++++|+|++.+..-..-.+. .+...-+++.+.|.+.+++||+ +| .|+ -+++.+.++.+ ..++-||=
T Consensus 98 la~~a~~~Gadavlv~~P~y~~kp-~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~~~pnIvgiK 175 (318)
T 3qfe_A 98 HINDASVAGANYVLVLPPAYFGKA-TTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNPNVVGVK 175 (318)
T ss_dssp HHHHHHHHTCSEEEECCCCC---C-CCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCcccCCC-CCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHhhCCCEEEEE
Confidence 999999999999977533111000 0001125677888888899986 43 244 57888888776 33444443
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.045 Score=57.32 Aligned_cols=70 Identities=16% Similarity=0.318 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+..+.++.+.++|+|.|.+|..... . ...++.++.+++.+ ++||++ |+|.+.++++.+.+. |+|+|.+|.
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~G~-----~-~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~~a-Gad~I~vg~ 325 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQGN-----S-VYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLIDA-GVDGLRVGM 325 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCC-----S-HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHH-TCSEEEECS
T ss_pred hhHHHHHHHHHcCCCEEEeeccCCc-----c-hhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHHHc-CCCEEEECC
Confidence 4567788888999999999864311 0 23468899999988 899986 789999999998886 999998854
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.078 Score=49.41 Aligned_cols=136 Identities=19% Similarity=0.208 Sum_probs=80.1
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
..++..|...|...+.+.++.+. .|+|.|.+-. . + |... .+...-.++++.+++.++.|+.|-+=. .
T Consensus 7 ~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i-------~-D--g~fv-~~~~~~~~~~~~lr~~~~~~~~v~lmv-~ 74 (228)
T 1h1y_A 7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDI-------M-D--GHFV-PNLTIGAPVIQSLRKHTKAYLDCHLMV-T 74 (228)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEE-------E-B--SSSS-SCBCBCHHHHHHHHTTCCSEEEEEEES-S
T ss_pred CeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEE-------e-c--CCcC-cchhhCHHHHHHHHhhcCCcEEEEEEe-c
Confidence 34778999999999998887764 5899877663 0 0 1110 010111256666777666666644333 2
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC-HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc--Cccee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET--GCEGV 313 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad-~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t--GaDgV 313 (436)
+. .++++.+.++|+|+|++|+-... .. .+.++.+++. ++.++..=.-.|..+..+.+... ++|.|
T Consensus 75 d~---~~~i~~~~~agad~v~vH~~~~~--------~~~~~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~~~~~~d~v 142 (228)
T 1h1y_A 75 NP---SDYVEPLAKAGASGFTFHIEVSR--------DNWQELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVEAENPVELV 142 (228)
T ss_dssp CG---GGGHHHHHHHTCSEEEEEGGGCT--------TTHHHHHHHHHHT-TCEEEEEECTTSCGGGGHHHHHSSSCCSEE
T ss_pred CH---HHHHHHHHHcCCCEEEECCCCcc--------cHHHHHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEE
Confidence 22 33566677799999999976432 12 3556666654 55554433444443333333333 79999
Q ss_pred eeeh
Q 013813 314 LSAE 317 (436)
Q Consensus 314 mIGR 317 (436)
.++.
T Consensus 143 l~~s 146 (228)
T 1h1y_A 143 LVMT 146 (228)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8863
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.23 Score=48.14 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=74.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg 235 (436)
.|+ +-+...|.-. |++++ .|+|.| + .|....++.-| |-.-+.-..+.+...+++|++.++. +|.+.+-.|
T Consensus 17 ~~i-~~~tayDa~s----A~l~e~aG~d~i-l-vGdSl~~~~lG-~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfg 88 (275)
T 1o66_A 17 EKI-AMLTAYESSF----AALMDDAGVEML-L-VGDSLGMAVQG-RKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFG 88 (275)
T ss_dssp CCE-EEEECCSHHH----HHHHHHTTCCEE-E-ECTTHHHHTTC-CSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTT
T ss_pred CcE-EEEeCcCHHH----HHHHHHcCCCEE-E-ECHHHHHHHcC-CCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 444 4466777542 44554 589998 4 46555554433 5555556678888888888888875 566665443
Q ss_pred ---CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE
Q 013813 236 ---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 291 (436)
Q Consensus 236 ---~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia 291 (436)
.+.+++++-+..+.++|+++|.+-+.. .-.+.|+.+.+ .+|||++
T Consensus 89 sy~~s~~~a~~na~rl~kaGa~aVklEdg~----------e~~~~I~al~~-agIpV~g 136 (275)
T 1o66_A 89 AYQQSKEQAFAAAAELMAAGAHMVKLEGGV----------WMAETTEFLQM-RGIPVCA 136 (275)
T ss_dssp SSSSCHHHHHHHHHHHHHTTCSEEEEECSG----------GGHHHHHHHHH-TTCCEEE
T ss_pred CccCCHHHHHHHHHHHHHcCCcEEEECCcH----------HHHHHHHHHHH-cCCCeEe
Confidence 246777777888888999999997652 11244555554 3788873
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.041 Score=57.67 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+..+.++.+.++|+|.|.++..... ....++.++++++.. ++||++ |+|.+.++++.+.+. |||+|.+|
T Consensus 230 ~d~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~a-GaD~I~Vg 300 (496)
T 4fxs_A 230 PGNEERVKALVEAGVDVLLIDSSHGH------SEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEA-GVSAVKVG 300 (496)
T ss_dssp SCCHHHHHHHHHTTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHH-TCSEEEEC
T ss_pred cchHHHHHHHHhccCceEEecccccc------chHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHh-CCCEEEEC
Confidence 34466788888999999999755321 123468899999887 889988 889999999998886 99999986
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.23 Score=49.09 Aligned_cols=123 Identities=9% Similarity=-0.019 Sum_probs=85.7
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCC
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN 237 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~ 237 (436)
|+...+.|.+++++ .+.++.|+..|-+-.| ++ -.+.++++++.+ ++.+.|-..-+++
T Consensus 121 ~~~~~~~g~~~e~~---~~~~~~G~~~~KiKvg------------------~~-d~~~v~avr~~~~~~~l~vDaN~~~~ 178 (342)
T 2okt_A 121 AYGATASGLSNKQL---ESLKATKPTRIKLKWT------------------PQ-IMHQIRVLRELDFHFQLVIDANESLD 178 (342)
T ss_dssp ECEEEESSCCHHHH---HHHHHHCCSEEEEECC------------------TT-HHHHHHHHTTSSSCCEEEEECTTCCC
T ss_pred eeeEEEecCCHHHH---HHHHHcCCcEEEEEeC------------------HH-HHHHHHHHHHhCCCCeEEEECCCCCC
Confidence 34444424444555 4445679999998764 23 356778888776 4567777666889
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+++ ++++.+++.++.+| ++... +-|++..++ +.+++||.+.=.+.+..++.++++...+|.|++-
T Consensus 179 ~~~A-~~~~~l~~~~i~~i-------EqP~~---~~d~~~~~~--~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~i~~k 244 (342)
T 2okt_A 179 RQDF-TQLQLLAREQVLYI-------EEPFK---DISMLDEVA--DGTIPPIALDEKATSLLDIINLIELYNVKVVVLK 244 (342)
T ss_dssp GGGH-HHHHHHGGGCEEEE-------ECCCS---SGGGGGGSC--TTSSCCEEESTTCCCHHHHHHHHHHSCCCEEEEC
T ss_pred HHHH-HHHHHHhhCCCcEE-------ECCCC---CccHHHHHH--hcCCCCEEecCCCCCHHHHHHHHHhCCCCEEEEC
Confidence 9999 99999999888776 11110 123443444 4568999999999999999999998789988764
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.25 Score=48.38 Aligned_cols=162 Identities=13% Similarity=0.119 Sum_probs=93.2
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
.|+ +=+...|.-. |++++ .|||.|=+-- ++- ++.- |+-....-..+.+...++.|.+.+++||++-+-.|
T Consensus 22 ~~i-~~~~a~D~~s----A~l~e~aGf~ai~vs~~s~a--~~~~-G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~G 93 (298)
T 3eoo_A 22 QPL-QVVGAITAYA----AKMAEAVGFKAVYLSGGGVA--ANSL-GIPDLGISTMDDVLVDANRITNATNLPLLVDIDTG 93 (298)
T ss_dssp SSE-EEEECSSHHH----HHHHHHHTCSCEEECHHHHH--HHTT-CCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTC
T ss_pred CcE-EEecCCCHHH----HHHHHHcCCCEEEECcHHHH--HHhc-CCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCC
Confidence 444 3456666543 23333 4888887752 211 1111 12222333567777778888888899999999887
Q ss_pred C-ChhhHHHHHHHHHHcCccEEEeccCcccccCCC---CCccCH-HHHHHHHh---hC-CCcEEEccCCCCH--H-----
Q 013813 236 P-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK---KFRADW-NAIKAVKN---AL-RIPVLANGNVRHM--E----- 299 (436)
Q Consensus 236 ~-~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~---~g~ad~-~~i~~ik~---~~-~iPVianGGI~s~--e----- 299 (436)
. +..++.+.++.++++|+.+|.+-+.....+.+. +.-.+. +.+.+|+. .. +.+++.++..... +
T Consensus 94 yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldea 173 (298)
T 3eoo_A 94 WGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAA 173 (298)
T ss_dssp SSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHH
Confidence 5 456777888999999999999977654222111 111222 34555543 22 3456666655443 2
Q ss_pred --HHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 300 --DVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 300 --da~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.++.+.+ .|||+|++= + +.++..++++.
T Consensus 174 i~Ra~ay~~-AGAD~if~~-~-~~~~ee~~~~~ 203 (298)
T 3eoo_A 174 IERAIAYVE-AGADMIFPE-A-MKTLDDYRRFK 203 (298)
T ss_dssp HHHHHHHHH-TTCSEEEEC-C-CCSHHHHHHHH
T ss_pred HHHHHhhHh-cCCCEEEeC-C-CCCHHHHHHHH
Confidence 2223333 499999883 2 24666555554
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.087 Score=48.86 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=75.9
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCcEEEEec--CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 160 LFVQFCANDPEILLNAARRVE-PYCDYVDINL--GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~--GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
++..|.+.|++.+.+.++.+. .|+|.|++.. |.=..+ .....++++++++.++.|+.+-+=+.
T Consensus 13 i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~-------------~~~~~~~i~~l~~~~~~~~~v~l~vn- 78 (230)
T 1rpx_A 13 VSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN-------------ITIGPLVVDSLRPITDLPLDVHLMIV- 78 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC-------------BCCCHHHHHHHGGGCCSCEEEEEESS-
T ss_pred EEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccc-------------cccCHHHHHHHHhccCCcEEEEEEec-
Confidence 677888999999998887664 5899888864 110011 11113566677776666766654232
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccC--cccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgR--t~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+..++++.+.++|+|+|++|+- ... ...+.++.+++. ++.++..-.-.+..+..+.+. .++|.|.
T Consensus 79 ---d~~~~v~~~~~~Gad~v~vh~~~~~~~--------~~~~~~~~~~~~-g~~ig~~~~p~t~~e~~~~~~-~~~d~vl 145 (230)
T 1rpx_A 79 ---EPDQRVPDFIKAGADIVSVHCEQSSTI--------HLHRTINQIKSL-GAKAGVVLNPGTPLTAIEYVL-DAVDLVL 145 (230)
T ss_dssp ---SHHHHHHHHHHTTCSEEEEECSTTTCS--------CHHHHHHHHHHT-TSEEEEEECTTCCGGGGTTTT-TTCSEEE
T ss_pred ---CHHHHHHHHHHcCCCEEEEEecCccch--------hHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHH-hhCCEEE
Confidence 2446778888999999999976 321 113556666653 444443322223333333333 3789884
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.21 Score=50.27 Aligned_cols=90 Identities=17% Similarity=0.295 Sum_probs=63.5
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc--------------c-------------cCC---------
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------E-------------KDG--------- 268 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~--------------~-------------~~~--------- 268 (436)
+.|+++-+=...+.+...+.++.++++|++.|.||.-+.. + ..+
T Consensus 132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~ 211 (368)
T 2nli_A 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA 211 (368)
T ss_dssp TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence 4577776533345566677888888888888877532110 0 000
Q ss_pred CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 269 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 269 ~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
......|+.|+.+++.+++||+.-| |.+.++++.+.+. |+|+|.+.
T Consensus 212 ~d~~~~~~~i~~lr~~~~~PvivK~-v~~~e~a~~a~~~-Gad~I~vs 257 (368)
T 2nli_A 212 SKQKISPRDIEEIAGHSGLPVFVKG-IQHPEDADMAIKR-GASGIWVS 257 (368)
T ss_dssp BCSBCCHHHHHHHHHHSSSCEEEEE-ECSHHHHHHHHHT-TCSEEEEC
T ss_pred cCchhhHHHHHHHHHHcCCCEEEEc-CCCHHHHHHHHHc-CCCEEEEc
Confidence 0124579999999999999998874 6899999998876 99999883
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.29 Score=45.83 Aligned_cols=140 Identities=10% Similarity=0.049 Sum_probs=85.0
Q ss_pred CC-CEEEEecCCCH-HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DR-PLFVQFCANDP-EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~-plivQL~g~d~-e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+. ++++=+=-+|. +....+++.+... |.|.+|. ||+. .+.+...++...+. +.-|+|=..+
T Consensus 52 ~~~~VflDlK~~DI~nTv~~~~~~~~~~-d~vTVh~-----------~~G~----~~~~~~a~~~~~~~-~~~v~vLts~ 114 (222)
T 4dbe_A 52 DVEEIIVDFKLADIGYIMKSIVERLSFA-NSFIAHS-----------FIGV----KGSLDELKRYLDAN-SKNLYLVAVM 114 (222)
T ss_dssp CCSEEEEEEEECSCHHHHHHHHTTCTTC-SEEEEES-----------TTCT----TTTHHHHHHHHHHT-TCEEEEEEEC
T ss_pred CCCeEEEEeeecchHHHHHHHHHHHHhC-CEEEEEc-----------CcCc----HHHHHHHHHHHHhc-CCcEEEEEeC
Confidence 55 78877766664 5555566555445 9999994 2220 12233444443321 2345543334
Q ss_pred CC---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHH-HHHHHHHhcCc
Q 013813 235 FP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME-DVQKCLEETGC 310 (436)
Q Consensus 235 g~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~e-da~~~l~~tGa 310 (436)
.. .......+++.++++|++++++.+.. -+.++.+++..+-.++..+||.--. +..++++. |+
T Consensus 115 s~~~~~~~~~~~~a~~a~~~g~~GvV~sat~------------p~e~~~ir~~~~~~~~vtPGI~~~g~tp~~a~~~-Ga 181 (222)
T 4dbe_A 115 SHEGWSTLFADYIKNVIREISPKGIVVGGTK------------LDHITQYRRDFEKMTIVSPGMGSQGGSYGDAVCA-GA 181 (222)
T ss_dssp SSTTCCCTTHHHHHHHHHHHCCSEEEECTTC------------HHHHHHHHHHCTTCEEEECCBSTTSBCTTHHHHH-TC
T ss_pred CCcchHHHHHHHHHHHHHHhCCCEEEECCCC------------HHHHHHHHHhCCCCEEEcCCcccCccCHHHHHHc-CC
Confidence 21 11233678899999999998764321 1346677776543677889887421 45566665 99
Q ss_pred ceeeeehHHhhCCccc
Q 013813 311 EGVLSAESLLENPALF 326 (436)
Q Consensus 311 DgVmIGRgal~nP~lf 326 (436)
|.++|||+++.-++-.
T Consensus 182 d~iVVGR~I~~A~dP~ 197 (222)
T 4dbe_A 182 DYEIIGRSIYNAGNPL 197 (222)
T ss_dssp SEEEECHHHHTSSSHH
T ss_pred CEEEECHHhcCCCCHH
Confidence 9999999999865543
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.29 Score=50.57 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHH-Hc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAARR-VE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA~~-v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~ 243 (436)
.+++++++.|+. ++ .||..|-|..|.+ +++.-.+.|+++++.. ++.+.|-..-+++..+++.
T Consensus 184 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~~~~A~~ 248 (455)
T 3pfr_A 184 MDTQAVIELAAASKDRYGFKDFKLKGGVF---------------EGSKEIDTVIELKKHFPDARITLDPNGCWSLDEAIQ 248 (455)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHCTTCCEEEECTTBSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCC---------------CHHHHHHHHHHHHHhCCCCeEeecCCCCCCHHHHHH
Confidence 578998887764 55 5999999987642 1222345566676665 5677777777889999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccC----HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad----~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+++.+++. +.+| ++... +-| ++..+++++.+++||.+.=-+.+..++.++++...+|.+++
T Consensus 249 ~~~~L~~~-l~~i-------EeP~~---~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~di~~~ 313 (455)
T 3pfr_A 249 LCKGLNDV-LTYA-------EDPCI---GENGYSGREIMAEFRRRTGIPTATNMIATNWREMCHAIMLQSVDIPLA 313 (455)
T ss_dssp HHTTCTTT-CSEE-------ESCBC---CBTTBCHHHHHHHHHHHHCCCEEESSSCCSHHHHHHHHHHTCCSEEBC
T ss_pred HHHhhccc-ceee-------ecCCC---hhhccchHHHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence 99988876 6555 22111 123 67889999999999988767889999999999877887754
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.11 Score=47.45 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=61.6
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcE-EEccCCCCHHHHHH
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV-LANGNVRHMEDVQK 303 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPV-ianGGI~s~eda~~ 303 (436)
..|+..=++ +.+.++..+.++.+.+.|++.|.+...+ +...+.++++++..++++ ++.|++.+.++++.
T Consensus 6 ~~~i~~~i~-~~d~~~~~~~~~~~~~~G~~~i~l~~~~---------~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~ 75 (212)
T 2v82_A 6 KLPLIAILR-GITPDEALAHVGAVIDAGFDAVEIPLNS---------PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDA 75 (212)
T ss_dssp SSCEEEECT-TCCHHHHHHHHHHHHHHTCCEEEEETTS---------TTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHH
T ss_pred CCCEEEEEe-CCCHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHhCCCCeEEEeccccCHHHHHH
Confidence 456665554 4567888999999999999999885332 122467777877666664 56788999999999
Q ss_pred HHHhcCcceeeeeh
Q 013813 304 CLEETGCEGVLSAE 317 (436)
Q Consensus 304 ~l~~tGaDgVmIGR 317 (436)
+++. |+|+|.+|.
T Consensus 76 a~~~-Gad~V~~~~ 88 (212)
T 2v82_A 76 LARM-GCQLIVTPN 88 (212)
T ss_dssp HHHT-TCCEEECSS
T ss_pred HHHc-CCCEEEeCC
Confidence 8886 999998774
|
| >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... | Back alignment and structure |
|---|
Probab=94.52 E-value=0.18 Score=48.60 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=70.1
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKA 280 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ 280 (436)
.||..+++.+++++ +. .+++||.+|--...+.++....+..+...|...+++.-|... +++. ...|+..+..
T Consensus 100 IgA~~~rn~~ll~~----~a-~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~L~~rG~~--~~y~~~~~dl~~i~~ 172 (267)
T 2nwr_A 100 IPAFLCRQTDLLLA----AA-KTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTT--FGYNNLVVDFRSLPI 172 (267)
T ss_dssp ECGGGTTCHHHHHH----HH-TTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEE--CSSSCEECCTTHHHH
T ss_pred ECcccccCHHHHHH----HH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCccccCHHHHHH
Confidence 47778888885554 43 578999999655457778888888899999866655444332 2331 1258888888
Q ss_pred HHhhCCCcEEEc---------------cCCCC--HHHHHHHHHhcCcceeeeehH
Q 013813 281 VKNALRIPVLAN---------------GNVRH--MEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 281 ik~~~~iPVian---------------GGI~s--~eda~~~l~~tGaDgVmIGRg 318 (436)
+++. + ||+.. +|-.. ..-+...+. .|+||+||=+-
T Consensus 173 lk~~-~-pVivD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava-~Ga~G~mIE~H 224 (267)
T 2nwr_A 173 MKQW-A-KVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVA-VGCDGVFMETH 224 (267)
T ss_dssp HTTT-S-EEEEETTGGGCCTTC------CCGGGHHHHHHHHHH-HCCSEEEEEEE
T ss_pred HHHc-C-CEEEcCCcccccCCCcCcCCCCchhHHHHHHHHHHH-cCCCEEEEEec
Confidence 8876 6 99873 33211 122334444 59999999753
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.14 Score=49.48 Aligned_cols=167 Identities=14% Similarity=0.186 Sum_probs=98.3
Q ss_pred CCcEEEcc-CCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAP-MVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAP-M~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
++|+++|| |.+.++ .|+..+...|.+++.|+-+.......+. .|-++. ..
T Consensus 17 ~npi~~aag~~~~~~-~~~~~~~~~g~G~~~~~si~~~p~~g~~-------------~p~l~~---------------~~ 67 (311)
T 1ep3_A 17 KNPIIPASGCFGFGE-EYAKYYDLNKLGSIMVKATTLHPRFGNP-------------TPRVAE---------------TA 67 (311)
T ss_dssp SSSEEECTTSSTTST-TGGGTSCGGGSSCEEEEEECSSCBCCCC-------------SCCEEE---------------ET
T ss_pred CCCcEECCCCCCCCH-HHHHHHHhcCCCEEEeCeeccCccCCCC-------------CCeEEE---------------CC
Confidence 78999999 988876 5666665567777777766543322111 111110 00
Q ss_pred CCCcEEEEe-cCCCchhhhcCcccccccCChHHH-HHHHHHHhc-ccCccEEEEeccCCChhhHHHHHHHHHH-cCccEE
Q 013813 181 PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLV-KSLVEKLAL-NLNVPVSCKIRVFPNLQDTIKYAKMLED-AGCSLL 256 (436)
Q Consensus 181 ~g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v-~eIv~av~~-~~~iPVsVKiRlg~~~~d~~~~ak~le~-aG~d~I 256 (436)
... +| +|... ..++.. .++++.+++ ..+.|+.+-+.. .+.++..+.++.+++ +|+|+|
T Consensus 68 --~g~--~~~~g~~~-------------~~~~~~~~~~~~~~~~~~~~~p~~v~l~~-~~~~~~~~~a~~~~~~~g~d~i 129 (311)
T 1ep3_A 68 --SGM--LNAIGLQN-------------PGLEVIMTEKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAI 129 (311)
T ss_dssp --TEE--EECCCCCB-------------CCHHHHHHTHHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEE
T ss_pred --ccc--ccccCCCC-------------cCHHHHHHHHHHHHHhcCCCCcEEEEEcC-CCHHHHHHHHHHHhccCCCCEE
Confidence 011 11 11110 112332 335556665 337888887643 356788888899988 999999
Q ss_pred EeccCccccc-----CCCCCccCHHHHHHHHhhCCCcEEE--ccCCCCHHHHHHHHHhcCcceeee
Q 013813 257 AVHGRTRDEK-----DGKKFRADWNAIKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 257 ~VHgRt~~~~-----~~~~g~ad~~~i~~ik~~~~iPVia--nGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+|--..... .+.....-++.++.+++.+++||+. ..++.+..++.+.++..|+|+|.+
T Consensus 130 ei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v 195 (311)
T 1ep3_A 130 ELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTM 195 (311)
T ss_dssp EEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEE
T ss_pred EEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEE
Confidence 9985322110 0000011257788888888899875 346777777555555669999988
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.24 Score=52.03 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=63.1
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc-------c------------------cCC-----------
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-------E------------------KDG----------- 268 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~-------~------------------~~~----------- 268 (436)
..|.++.+-.+.+.+...+++++++++|+++|.||--... . ...
T Consensus 246 ~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~ 325 (511)
T 1kbi_A 246 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF 325 (511)
T ss_dssp SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTT
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhc
Confidence 4577777655556566677888888899988766532110 0 000
Q ss_pred CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 269 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 269 ~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
......|+.|+.+++.+++||+.- |+.+.++++.+.+. |+|+|.++
T Consensus 326 ~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~~a-Gad~I~vs 371 (511)
T 1kbi_A 326 IDPSLTWKDIEELKKKTKLPIVIK-GVQRTEDVIKAAEI-GVSGVVLS 371 (511)
T ss_dssp BCTTCCHHHHHHHHHHCSSCEEEE-EECSHHHHHHHHHT-TCSEEEEC
T ss_pred cChHhHHHHHHHHHHHhCCcEEEE-eCCCHHHHHHHHHc-CCCEEEEc
Confidence 011246999999999999999977 46679999988875 99999983
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.36 Score=49.96 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=86.5
Q ss_pred CHHHHHHHH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
++++.++.+ +..+ .||+.+-|..|.. +++.-.+.++++++.+ ++++.|-..-+|+.++++++
T Consensus 202 ~~~~~~~~~~~~~~~~Gf~~~KlKvG~~---------------~~~~di~~v~avrea~pd~~L~vDaN~~wt~~~Ai~~ 266 (464)
T 4g8t_A 202 TPESVVRLAEAAYEKYGFNDFKLKGGVL---------------DGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKI 266 (464)
T ss_dssp SHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEeCCCC---------------CHHHHHHHHHHHHhhCCCceEEEECCCccCHHHHHHH
Confidence 456655555 3344 4999999886532 2333445667777766 56777777778999999999
Q ss_pred HHHHHHcCccEEEeccCcccccCC-CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~-~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.++.. +.+| ++... .......+..+++++.+++||.+.-.+.+..++.++++...+|.++.
T Consensus 267 ~~~le~~-l~wi-------EeP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~~~~~~~~~i~~~avdi~~~ 330 (464)
T 4g8t_A 267 GKQLKGV-LAYA-------EDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSVDIPLA 330 (464)
T ss_dssp HHHTTTT-CSCE-------ESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHHTCCSEEBC
T ss_pred HHHhhhc-ccee-------ecCcCcccccchHHHHHhhhccCCCCccccccccchhhHHHHHHhhCCCEEec
Confidence 9998765 5544 21111 00012347788999999999999999999999999999877775543
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.48 E-value=1.6 Score=40.93 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=81.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP- 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~- 236 (436)
.+.++.++. ++++..+.++. .+.|.|.||- -..|+.+. .+++..++||.=-+|+..
T Consensus 71 ~~~~v~v~v-~~~ei~~~i~~--~~ld~vQLHG----------------~E~~~~~~----~l~~~~~~~viKa~~v~~~ 127 (228)
T 4aaj_A 71 PVFLVSTMV-GFSEWAMAIER--TGAQYIQVHS----------------NALPQTID----TLKKEFGVFVMKAFRVPTI 127 (228)
T ss_dssp CEEEEECCC-CHHHHHHHHHH--HTCSEEEECS----------------CCCHHHHH----HHHHHHCCEEEEEEECCSS
T ss_pred CCEEEeccC-chHHHHHHHHh--ccchheeccc----------------ccCHHHHH----HHhhccCceEEEEEEeccc
Confidence 345566655 46655444332 2679999982 12455444 445555677754455532
Q ss_pred --C-hhhHHHHHHHHHHcCccEEEeccCcccccCCCCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 237 --N-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 237 --~-~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
. .++...+...+....+|++.+-.. +++| ..||+.++.+.. +.|++..||++ ++.+.++++..+..|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~d~~LlDs~------GGtG~~fDW~~~~~~~~--~~p~iLAGGL~-peNV~~Ai~~~~P~g 198 (228)
T 4aaj_A 128 SKNPEEDANRLLSEISRYNADMVLLDTG------AGSGKLHDLRVSSLVAR--KIPVIVAGGLN-AENVEEVIKVVKPYG 198 (228)
T ss_dssp CSCHHHHHHHHHHHHHHSCCSEEEEEC-------------CCCHHHHHHHH--HSCEEEESSCC-TTTHHHHHHHHCCSE
T ss_pred ccchhhhHHHHHHHHhccCCCEEccCCC------CCCcCcCChHHHHHhhh--cCCeEEECCCC-HHHHHHHHHHhCCCE
Confidence 1 233444455566678999877532 2222 479998887765 46999999996 688888888778888
Q ss_pred eeeehHHh
Q 013813 313 VLSAESLL 320 (436)
Q Consensus 313 VmIGRgal 320 (436)
|=+..|.=
T Consensus 199 VDVsSGVE 206 (228)
T 4aaj_A 199 VDVSSGVE 206 (228)
T ss_dssp EEESGGGE
T ss_pred EEeCCCCC
Confidence 88887763
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.44 Score=45.82 Aligned_cols=139 Identities=13% Similarity=0.147 Sum_probs=86.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg 235 (436)
.|+ +-+...|.-. |++++ .|+|.|=+ |....++.-| |-.-+.-..+.+...+++|++.++. +|.+-+-.|
T Consensus 17 ~~i-~~~tayD~~s----A~l~e~aG~d~ilv--Gdsl~~~~lG-~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfg 88 (264)
T 1m3u_A 17 KRF-ATITAYDYSF----AKLFADEGLNVMLV--GDSLGMTVQG-HDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFM 88 (264)
T ss_dssp CCE-EEEECCSHHH----HHHHHHHTCCEEEE--CTTHHHHTTC-CSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTT
T ss_pred CcE-EEEeCcCHHH----HHHHHHcCCCEEEE--CHHHHHHHcC-CCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 444 4466777542 44554 49999966 6666555443 4555555667778888888888875 456664332
Q ss_pred C--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE-----------ccCC----CCH
Q 013813 236 P--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-----------NGNV----RHM 298 (436)
Q Consensus 236 ~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia-----------nGGI----~s~ 298 (436)
. +.+++++.+..+.++|+++|.+-+.. .-.+.|+.+.+ .+|||++ .||. ++.
T Consensus 89 sy~~~~~a~~~a~rl~kaGa~aVklEgg~----------e~~~~I~al~~-agipV~gHiGLtPq~v~~~ggf~v~grt~ 157 (264)
T 1m3u_A 89 AYATPEQAFENAATVMRAGANMVKIEGGE----------WLVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGD 157 (264)
T ss_dssp SSSSHHHHHHHHHHHHHTTCSEEECCCSG----------GGHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSH
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEECCcH----------HHHHHHHHHHH-CCCCeEeeecCCceeecccCCeEEEeCCH
Confidence 1 45677777788888999999887652 11345666654 3799983 4554 344
Q ss_pred HHHHHHH------HhcCcceeee
Q 013813 299 EDVQKCL------EETGCEGVLS 315 (436)
Q Consensus 299 eda~~~l------~~tGaDgVmI 315 (436)
+.+++++ ++.|||+|.+
T Consensus 158 ~~a~~~i~rA~a~~eAGA~~ivl 180 (264)
T 1m3u_A 158 EAGDQLLSDALALEAAGAQLLVL 180 (264)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHCCCcEEEE
Confidence 4333333 2348998876
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.29 Score=48.98 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=73.3
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 281 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~i 281 (436)
-||.-+++..+++++- ..++||.+|.-.. +.++....++.+.+.|.+.+.+|+-+.-+. .....|+..|..+
T Consensus 130 I~S~~~~n~~LL~~va-----~~gkPviLstGma-t~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~--~~~~~nL~ai~~l 201 (349)
T 2wqp_A 130 IGSGECNNYPLIKLVA-----SFGKPIILSTGMN-SIESIKKSVEIIREAGVPYALLHCTNIYPT--PYEDVRLGGMNDL 201 (349)
T ss_dssp ECGGGTTCHHHHHHHH-----TTCSCEEEECTTC-CHHHHHHHHHHHHHHTCCEEEEECCCCSSC--CGGGCCTHHHHHH
T ss_pred ECcccccCHHHHHHHH-----hcCCeEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeccCCCCC--ChhhcCHHHHHHH
Confidence 3677788988877664 3589999996554 778888888888899998888886543222 1225789999999
Q ss_pred HhhC-CCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 282 KNAL-RIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 282 k~~~-~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
++.. ++||..++==....-+...+.. ||+
T Consensus 202 k~~f~~lpVg~sdHt~G~~~~~AAvAl-GA~ 231 (349)
T 2wqp_A 202 SEAFPDAIIGLSDHTLDNYACLGAVAL-GGS 231 (349)
T ss_dssp HHHCTTSEEEEECCSSSSHHHHHHHHH-TCC
T ss_pred HHHCCCCCEEeCCCCCcHHHHHHHHHh-CCC
Confidence 9998 8999876633335555566654 888
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.44 Score=46.12 Aligned_cols=122 Identities=11% Similarity=-0.047 Sum_probs=81.8
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-CChhhHHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYA 245 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-~~~~d~~~~a 245 (436)
|.+.+.+-++ .++.|+|+|=++. ..|-+..-..+.-.++++.+.+.++- |.+. .| .+..++++++
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaG--vg~~~t~~ai~la 84 (288)
T 2nuw_A 18 NVDALKTHAKNLLEKGIDAIFVNG----------TTGLGPALSKDEKRQNLNALYDVTHK-LIFQ--VGSLNLNDVMELV 84 (288)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETS----------TTTTGGGSCHHHHHHHHHHHTTTCSC-EEEE--CCCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCC-eEEe--eCCCCHHHHHHHH
Confidence 5666777775 4567999998873 34545555677778889988877754 6666 44 3568899999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec----cCC-CCHHHHHHH
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQKC 304 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an----GGI-~s~eda~~~ 304 (436)
+.++++|+|++.+..-..... .+...-+++.+.|.+.+++||+ +| -|+ -+++.+.++
T Consensus 85 ~~A~~~Gadavlv~~P~y~~~--~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 147 (288)
T 2nuw_A 85 KFSNEMDILGVSSHSPYYFPR--LPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL 147 (288)
T ss_dssp HHHHTSCCSEEEECCCCSSCS--CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT
T ss_pred HHHHhcCCCEEEEcCCcCCCC--CCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc
Confidence 999999999997753321100 0101125667888888899986 45 243 466666654
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.024 Score=55.52 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=47.6
Q ss_pred HHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC------
Q 013813 214 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL------ 285 (436)
Q Consensus 214 ~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~------ 285 (436)
.+-++++++..+ +++.+-+. +.++ ++.+.++|+|+|-++.-. .+.++++++.+
T Consensus 186 ~~ai~~~r~~~~~~~~i~vev~---tlee----~~~A~~aGaD~I~ld~~~------------~~~l~~~v~~l~~~~~g 246 (294)
T 3c2e_A 186 TNAVKNARAVCGFAVKIEVECL---SEDE----ATEAIEAGADVIMLDNFK------------GDGLKMCAQSLKNKWNG 246 (294)
T ss_dssp HHHHHHHHHHHCTTSCEEEECS---SSHH----HHHHHHHTCSEEECCC-------------------------------
T ss_pred HHHHHHHHHhcCcCCeEEEecC---CHHH----HHHHHHcCCCEEEECCCC------------HHHHHHHHHHhcccccC
Confidence 344555555543 35555432 2233 333446899999876421 12333333332
Q ss_pred --CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 286 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 286 --~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+++|.++||| +.+.+.++.+ +|+|++.+|+.....|++
T Consensus 247 ~~~v~I~ASGGI-t~~ni~~~~~-~GvD~i~vGs~i~~a~~~ 286 (294)
T 3c2e_A 247 KKHFLLECSGGL-NLDNLEEYLC-DDIDIYSTSSIHQGTPVI 286 (294)
T ss_dssp --CCEEEEECCC-CC------CC-CSCSEEECGGGTSSCCCC
T ss_pred CCCeEEEEECCC-CHHHHHHHHH-cCCCEEEEechhcCCCCC
Confidence 3899999999 8899999886 599999999886555554
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.44 Score=46.00 Aligned_cols=121 Identities=21% Similarity=0.142 Sum_probs=80.3
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-CChhhHHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYA 245 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-~~~~d~~~~a 245 (436)
|.+.+.+-++ .++.|+|+|=++. .-|-+..-..+.-.++++.+.+.++- |.+. .| .+..++++++
T Consensus 17 D~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~G--vg~~~t~~ai~la 83 (286)
T 2r91_A 17 DPELFANHVKNITSKGVDVVFVAG----------TTGLGPALSLQEKMELTDAATSAARR-VIVQ--VASLNADEAIALA 83 (286)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETS----------TTTTGGGSCHHHHHHHHHHHHHHCSS-EEEE--CCCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCC-EEEe--eCCCCHHHHHHHH
Confidence 5667777775 4567999998873 23444444666667788877776644 7766 44 3568899999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE-c-----cCCCCHHHHHH
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-N-----GNVRHMEDVQK 303 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia-n-----GGI~s~eda~~ 303 (436)
+.++++|+|++.+..-..... .+...-+++.+.|.+.+++||+. | |---+++.+.+
T Consensus 84 ~~A~~~Gadavlv~~P~y~~~--~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 145 (286)
T 2r91_A 84 KYAESRGAEAVASLPPYYFPR--LSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKE 145 (286)
T ss_dssp HHHHHTTCSEEEECCSCSSTT--CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHH
T ss_pred HHHHhcCCCEEEEcCCcCCCC--CCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHh
Confidence 999999999997753321100 01011256677888888999864 4 33356777766
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.7 Score=44.92 Aligned_cols=136 Identities=16% Similarity=0.160 Sum_probs=91.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C-
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F- 235 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g- 235 (436)
.+.+-+|..+.++...| .+.|+|-|||+-+-.. +.+--.+. +++.+++.+++||-+=||. |
T Consensus 39 ~~~lEvc~~s~~~a~~A---~~gGAdRIELc~~l~~---------GGlTPS~g----~i~~a~~~~~ipV~vMIRPRgGd 102 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNA---ERGGADRIELCSGLSE---------GGTTPSMG----VLQVVKQSVQIPVFVMIRPRGGD 102 (287)
T ss_dssp CSEEEEEESSHHHHHHH---HHHTCSEEEECBCGGG---------TCBCCCHH----HHHHHHTTCCSCEEEECCSSSSC
T ss_pred CceEEEEeCCHHHHHHH---HHhCCCEEEECCCCCC---------CCCCCCHH----HHHHHHHhcCCCeEEEEecCCCC
Confidence 36788999998876544 3468999999832111 12222333 3455566678999988887 2
Q ss_pred --CChh---hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCC---CCHHHHHHHHH
Q 013813 236 --PNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNV---RHMEDVQKCLE 306 (436)
Q Consensus 236 --~~~~---d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI---~s~eda~~~l~ 306 (436)
.+.. ...+-++.+.++|+|+|+++.=+.+. ..|.+.++++.+.. .++|...=-+ .++..+.+.+.
T Consensus 103 F~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg------~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li 176 (287)
T 3iwp_A 103 FLYSDREIEVMKADIRLAKLYGADGLVFGALTEDG------HIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLL 176 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS------CBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCC------CcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHH
Confidence 1222 23455777889999999998766542 57888888776653 6888877653 45777777666
Q ss_pred hcCcceeeee
Q 013813 307 ETGCEGVLSA 316 (436)
Q Consensus 307 ~tGaDgVmIG 316 (436)
..|+|.|..+
T Consensus 177 ~lGvdrILTS 186 (287)
T 3iwp_A 177 TLGFERVLTS 186 (287)
T ss_dssp HHTCSEEEEC
T ss_pred HcCCCEEECC
Confidence 6699999874
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.14 Score=47.41 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=66.2
Q ss_pred HHHHHHHhcccCccEEEEeccCC---Chh--hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 214 KSLVEKLALNLNVPVSCKIRVFP---NLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 214 ~eIv~av~~~~~iPVsVKiRlg~---~~~--d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
.++++.+ .-+++++|..-.+. +.+ +..++++.++++|+++|.+. ..+.++.+++.+++|
T Consensus 8 ~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~--------------~~~~i~~i~~~~~~p 71 (234)
T 1yxy_A 8 EKLMEQL--KGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN--------------SVRDIKEIQAITDLP 71 (234)
T ss_dssp HHHHHHH--TTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE--------------SHHHHHHHHTTCCSC
T ss_pred HHHHHHH--hCCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC--------------CHHHHHHHHHhCCCC
Confidence 3566666 33566666643321 245 77889999999999998763 125688999999999
Q ss_pred EEEc-------cCC---CCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 289 VLAN-------GNV---RHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 289 Vian-------GGI---~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
+++. +++ .+.++++.+++. |+|.|.++-....+|
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~~~i~~~~~~-Gad~V~l~~~~~~~~ 115 (234)
T 1yxy_A 72 IIGIIKKDYPPQEPFITATMTEVDQLAAL-NIAVIAMDCTKRDRH 115 (234)
T ss_dssp EEEECBCCCTTSCCCBSCSHHHHHHHHTT-TCSEEEEECCSSCCT
T ss_pred EEeeEcCCCCccccccCChHHHHHHHHHc-CCCEEEEcccccCCC
Confidence 9742 222 356778887775 999999998887777
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=2.6 Score=40.05 Aligned_cols=94 Identities=17% Similarity=0.305 Sum_probs=67.3
Q ss_pred CCCC-EEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEe
Q 013813 156 EDRP-LFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 232 (436)
Q Consensus 156 ~e~p-livQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKi 232 (436)
+++| ++|-|.|.+.+++.+.++.+ ..|+|.||+=+.+=.. ..+.+.+.+.+..+++.. ++|+.+=+
T Consensus 17 ~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~-----------~~~~~~v~~~l~~lr~~~~~lPiI~T~ 85 (258)
T 4h3d_A 17 EGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFEN-----------VENIKEVKEVLYELRSYIHDIPLLFTF 85 (258)
T ss_dssp SSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTT-----------TTCHHHHHHHHHHHHHHCTTSCEEEEC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccc-----------cCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4566 77999999999988777655 4589999998642100 135678889999998876 69999999
Q ss_pred cc----C---CChhhHHHHHHHHHHcC-ccEEEecc
Q 013813 233 RV----F---PNLQDTIKYAKMLEDAG-CSLLAVHG 260 (436)
Q Consensus 233 Rl----g---~~~~d~~~~ak~le~aG-~d~I~VHg 260 (436)
|. | .+.++..++.+.+.+.| +|+|.|--
T Consensus 86 Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl 121 (258)
T 4h3d_A 86 RSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVEL 121 (258)
T ss_dssp CCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEG
T ss_pred echhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhh
Confidence 87 2 13344555666666666 89998753
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.7 Score=46.01 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=87.1
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
|.+.+.+-++ +++.|+|+|=++. ..|-+..-..+.-.++++. ...-.+||.+.+- +.+..+++++++
T Consensus 45 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~vi~~-~~~grvpViaGvg-~~st~eai~la~ 112 (344)
T 2hmc_A 45 DFDALVRKGKELIADGMSAVVYCG----------SMGDWPLLTDEQRMEGVER-LVKAGIPVIVGTG-AVNTASAVAHAV 112 (344)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEESS----------GGGTGGGSCHHHHHHHHHH-HHHTTCCEEEECC-CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cCcChhhCCHHHHHHHHHH-HhCCCCcEEEecC-CCCHHHHHHHHH
Confidence 5677777775 4567999998873 2344444455555666666 2222689998842 235688999999
Q ss_pred HHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh-hCCCcEE-Ec----cCCCCHHHHHHH-HHhcCcceeeeehH
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPVL-AN----GNVRHMEDVQKC-LEETGCEGVLSAES 318 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~-~~~iPVi-an----GGI~s~eda~~~-l~~tGaDgVmIGRg 318 (436)
.++++|+|++.+..-.... ..+...-+++++.|.+ .+++||+ +| |---+++.+.++ .+..++-||=-..+
T Consensus 113 ~A~~~Gadavlv~~P~y~~--~~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l~~e~~~~L~a~~pnIvGiKdssg 189 (344)
T 2hmc_A 113 HAQKVGAKGLMVIPRVLSR--GSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFALRAEHKNLVGFKEFGG 189 (344)
T ss_dssp HHHHHTCSEEEECCCCSSS--TTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHHHHHCTTEEEEEECSC
T ss_pred HHHhcCCCEEEECCCccCC--CCCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCcCHHHHHHHHhcCCCEEEEEcCCC
Confidence 9999999999775322110 0000112566788888 7899976 45 434588888887 55444445443333
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.085 Score=54.85 Aligned_cols=71 Identities=21% Similarity=0.361 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.+..+.++.+.++|++.|.+|.... . ....|+.++.+++.+ ++||++ |++.+.++++.+.+. |+|+|.+|-
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~G-----~-~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~~-G~d~I~v~~ 307 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAHG-----H-SRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIKA-GADAVKVGV 307 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCC-----S-SHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHHT-TCSEEEECS
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCC-----c-hHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHHc-CCCEEEEcC
Confidence 4456678889999999999975421 1 123578899999987 799877 788999999888875 999999853
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.3 Score=47.06 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcccCccEEEEeccC-CChhhHHHHHHHHHHcCccEEEeccCcccccCCCC---------------CccCH
Q 013813 212 LVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK---------------FRADW 275 (436)
Q Consensus 212 ~v~eIv~av~~~~~iPVsVKiRlg-~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~---------------g~ad~ 275 (436)
.+.+..+.+++.-...+..=+-.| ++.+.+.++++.++++|+|.|.+---..++...++ ..--+
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~ 83 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF 83 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 455666666554444454444445 56788999999999999999988532222211110 00115
Q ss_pred HHHHHHHhh-CCCcEEEccCCCC-----HHHHHHHHHhcCcceeeeehHHhhC
Q 013813 276 NAIKAVKNA-LRIPVLANGNVRH-----MEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 276 ~~i~~ik~~-~~iPVianGGI~s-----~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+.++++++. +++||++-|=.+. .+...+.+.+.|+|||.+.---+..
T Consensus 84 ~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee 136 (267)
T 3vnd_A 84 DIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEE 136 (267)
T ss_dssp HHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGG
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhh
Confidence 778888887 8999988653221 2434444444599999986444433
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.057 Score=52.66 Aligned_cols=91 Identities=14% Similarity=0.209 Sum_probs=59.5
Q ss_pred HHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-----C
Q 013813 214 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----R 286 (436)
Q Consensus 214 ~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-----~ 286 (436)
.+.++.+++..+ +++.|=++ +. +-++.+.++|+|.|-++.-+. +.++++.+.+ +
T Consensus 180 ~~av~~ar~~~~~~~~I~VEV~---tl----eea~eA~~aGaD~I~LDn~~~------------e~l~~av~~l~~~~~~ 240 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEVEVE---NL----EDALRAVEAGADIVMLDNLSP------------EEVKDISRRIKDINPN 240 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEEEES---SH----HHHHHHHHTTCSEEEEESCCH------------HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCCceEEEEeC---CH----HHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhhccCCC
Confidence 455666666552 45555432 22 334556679999999886322 3333333322 7
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+|+.++|||+ .+.+.++.+ +|+|++.+|.....-|++
T Consensus 241 v~ieASGGIt-~eni~~~a~-tGVD~IsvGslt~sa~~~ 277 (285)
T 1o4u_A 241 VIVEVSGGIT-EENVSLYDF-ETVDVISSSRLTLQEVFV 277 (285)
T ss_dssp SEEEEEECCC-TTTGGGGCC-TTCCEEEEGGGTSSCCCC
T ss_pred ceEEEECCCC-HHHHHHHHH-cCCCEEEEeHHHcCCCCc
Confidence 8999999995 688888665 699999999877666653
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.54 Score=45.61 Aligned_cols=121 Identities=17% Similarity=-0.004 Sum_probs=81.4
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-CChhhHHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYA 245 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-~~~~d~~~~a 245 (436)
|.+.+.+-++ +++.|+|+|=++. .-|-+..-..+.-.++++.+.+.++- |.+. .| .+..++++++
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~eEr~~v~~~~~~~~~g-viaG--vg~~~t~~ai~la 84 (293)
T 1w3i_A 18 DKEKLKIHAENLIRKGIDKLFVNG----------TTGLGPSLSPEEKLENLKAVYDVTNK-IIFQ--VGGLNLDDAIRLA 84 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHTTCSC-EEEE--CCCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHcCC-EEEe--cCCCCHHHHHHHH
Confidence 5666777775 4567999998873 23444455667778888888877754 6666 44 3568899999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec----cCC-CCHHHHHH
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQK 303 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an----GGI-~s~eda~~ 303 (436)
+.++++|+|++.+..-..... .+...-+++.+.|.+.+++||+ +| -|+ -+++.+.+
T Consensus 85 ~~A~~~Gadavlv~~P~y~~~--~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 146 (293)
T 1w3i_A 85 KLSKDFDIVGIASYAPYYYPR--MSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE 146 (293)
T ss_dssp HHGGGSCCSEEEEECCCSCSS--CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred HHHHhcCCCEEEEcCCCCCCC--CCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh
Confidence 999999999997753221100 0001125667788888899986 44 243 57777766
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.14 Score=51.66 Aligned_cols=104 Identities=14% Similarity=0.216 Sum_probs=63.3
Q ss_pred ccCChHHHH--HHHHHHhcccCccEEEEecc----C-CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCcc-----
Q 013813 206 LMDNLPLVK--SLVEKLALNLNVPVSCKIRV----F-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA----- 273 (436)
Q Consensus 206 Ll~~p~~v~--eIv~av~~~~~iPVsVKiRl----g-~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~a----- 273 (436)
.+.+|+... ++++.. +-+.|+..-+.. + ++.+...+.++ ..+++++.||--.........|..
T Consensus 100 ~l~~~~~~~s~~~vr~~--ap~~~~~anlg~~ql~~~~~~~~~~~av~---~~~a~al~Ihln~~~~~~~p~g~~~~~~~ 174 (368)
T 3vkj_A 100 AIEKAEARESFAIVRKV--APTIPIIANLGMPQLVKGYGLKEFQDAIQ---MIEADAIAVHLNPAQEVFQPEGEPEYQIY 174 (368)
T ss_dssp HHHCGGGSHHHHHHHHH--CSSSCEEEEEEGGGGGTTCCHHHHHHHHH---HTTCSEEEEECCHHHHHHSSSCCCBCBTH
T ss_pred ccCCHHHHhhHHHHHHh--CcCcceecCcCeeecCCCCCHHHHHHHHH---HhcCCCeEEEecchhhhhCCCCCchhhHH
Confidence 334555433 334432 346788777655 3 55454444444 346667777643221100011112
Q ss_pred CHHHHHHHHhhCCCcEEEc--cCCCCHHHHHHHHHhcCcceeee
Q 013813 274 DWNAIKAVKNALRIPVLAN--GNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 274 d~~~i~~ik~~~~iPVian--GGI~s~eda~~~l~~tGaDgVmI 315 (436)
.++.|+.+++.+++||++= |+..++++++.+.+. |+|+|.+
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~a-Gad~I~V 217 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSY-GIKNFDT 217 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHT-TCCEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhC-CCCEEEE
Confidence 3678999999999999984 655789999998875 9999988
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.26 Score=48.57 Aligned_cols=92 Identities=12% Similarity=0.180 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
+++.+.+.++.+++.++.|+.|.+-.. + .+..+.++.+.++|+|.|.+|+.. + .+.++.+++ .++|
T Consensus 47 ~~~~~~~~i~~i~~~~~~p~gvnl~~~-~-~~~~~~~~~a~~~g~d~V~~~~g~---------p--~~~i~~l~~-~g~~ 112 (332)
T 2z6i_A 47 PKEVVKANIDKIKSLTDKPFGVNIMLL-S-PFVEDIVDLVIEEGVKVVTTGAGN---------P--SKYMERFHE-AGII 112 (332)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEEECTT-S-TTHHHHHHHHHHTTCSEEEECSSC---------G--GGTHHHHHH-TTCE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCC-C-CCHHHHHHHHHHCCCCEEEECCCC---------h--HHHHHHHHH-cCCe
Confidence 577788888888877778998886441 1 234466778889999999999752 1 234667766 4788
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeee-eh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLS-AE 317 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmI-GR 317 (436)
|+. .|.+.++++.+.+. |+|+|.+ |.
T Consensus 113 v~~--~v~~~~~a~~~~~~-GaD~i~v~g~ 139 (332)
T 2z6i_A 113 VIP--VVPSVALAKRMEKI-GADAVIAEGM 139 (332)
T ss_dssp EEE--EESSHHHHHHHHHT-TCSCEEEECT
T ss_pred EEE--EeCCHHHHHHHHHc-CCCEEEEECC
Confidence 885 47899999887775 9999988 53
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.15 Score=49.30 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=65.4
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc-Cccccc--CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHH
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 300 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg-Rt~~~~--~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~ed 300 (436)
...|+.+-++. .++++.+.++|++.|.+-. ...+.. .+.....+.+.++++++.+++|++.++++.+.++
T Consensus 20 ~~~~~i~~~~~-------~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~ 92 (297)
T 2zbt_A 20 FKGGVIMDVTT-------PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVE 92 (297)
T ss_dssp GTTEEEEEESS-------HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHH
T ss_pred hhCCeeeeech-------HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHH
Confidence 34566655443 6789999999999997621 111100 0101123578899999999999999988888888
Q ss_pred HHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 301 VQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 301 a~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
++.+++. |||+| .|......|.+++.++
T Consensus 93 ~~~~~~a-Gad~v-~~~~~~~~~~~~~~~~ 120 (297)
T 2zbt_A 93 AMILEAI-GVDFI-DESEVLTPADEEHHID 120 (297)
T ss_dssp HHHHHHT-TCSEE-EEETTSCCSCSSCCCC
T ss_pred HHHHHHC-CCCEE-eeeCCCChHHHHHHHH
Confidence 8888875 99999 4544333455555554
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.098 Score=55.13 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.+..+-++.|.++|+|.|+|..-... + ..-++.++.+++.. +++ +..|+|-|.+.++.+++. |||+|-+|-
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~ahGh-----s-~~v~~~i~~ik~~~p~~~-viaGNVaT~e~a~~Li~a-GAD~vkVGi 351 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSSQGN-----S-VYQIEFIKWIKQTYPKID-VIAGNVVTREQAAQLIAA-GADGLRIGM 351 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSCCC-----S-HHHHHHHHHHHHHCTTSE-EEEEEECSHHHHHHHHHH-TCSEEEECS
T ss_pred ccHHHHHHHHHhcCCcEEEEeccccc-----c-HHHHHHHHHHHhhCCcce-EEeccccCHHHHHHHHHc-CCCEEeecC
Confidence 45677889999999999988422111 0 12368889998876 555 557899999999999886 999998885
Q ss_pred H
Q 013813 318 S 318 (436)
Q Consensus 318 g 318 (436)
|
T Consensus 352 G 352 (556)
T 4af0_A 352 G 352 (556)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.88 E-value=1.3 Score=43.33 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=102.3
Q ss_pred CCcEEEccCCCCCcH-HHHHHHHHhCCCeEE----eCcccchhhccChhhhhhhhhccCCCCCEEEEecCCC-HHHHHHH
Q 013813 102 RPKLIVAPMVDNSEL-PFRMLCRRYGAEAAY----TPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAND-PEILLNA 175 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~-~fR~l~~~~Ga~l~~----Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d-~e~~~~A 175 (436)
.+++++| .++++. .-..++.+.+...++ +|++.+. ...... .++.. .+.++++=+=-.| |+....+
T Consensus 24 ~~~LiVA--LD~~~~~eal~l~~~l~~~v~~vKVG~~lf~~~----G~~~V~-~Lk~~-~g~~IflDlKl~DIpnTv~~a 95 (303)
T 3ru6_A 24 AMKLCVA--LDLSTKEECLQLAKELKNLDIWLKVGLRAYLRD----GFKFIE-ELKKV-DDFKIFLDLKFHDIPNTMADA 95 (303)
T ss_dssp CCEEEEE--CCCSSHHHHHHHHHHTTTSSCEEEECHHHHHHH----THHHHH-HHHHH-CCCEEEEEEEECSCHHHHHHH
T ss_pred CCCEEEE--eCCCCHHHHHHHHHHhCCCccEEEeCHHHHHHh----CHHHHH-HHHHh-hCCCEEEEeeeccCchhHHHH
Confidence 5677776 355443 234566677654333 3332221 111111 12211 1566776665555 5566666
Q ss_pred HHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE--EEeccCCCh------------hh
Q 013813 176 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFPNL------------QD 240 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs--VKiRlg~~~------------~d 240 (436)
++.+. .|+|.|.+|. +|+ ++.+...++..++.-..|.. |-+-...+. +.
T Consensus 96 v~~~a~lGaD~vTVHa-----------~~G-----~~~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l~~~~~~e~ 159 (303)
T 3ru6_A 96 CEEVSKLGVDMINIHA-----------SAG-----KIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSIYRQKIEEA 159 (303)
T ss_dssp HHHHHTTTCSEEEEEG-----------GGC-----HHHHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHHHSSCHHHH
T ss_pred HHHHHhcCCCEEEEec-----------cCC-----HHHHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHcCCHHHH
Confidence 66554 4999999994 221 34455555555433222222 211122221 22
Q ss_pred HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHH----------HHHHHHHhcC
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHME----------DVQKCLEETG 309 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~e----------da~~~l~~tG 309 (436)
...+|+...++|+++++..+ .+ ++.|++..+ -.++..+||+-.. .+.++++. |
T Consensus 160 V~~lA~~a~~~G~dGvV~s~------------~E---~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~a-G 223 (303)
T 3ru6_A 160 VINFSKISYENGLDGMVCSV------------FE---SKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMAREN-L 223 (303)
T ss_dssp HHHHHHHHHHTTCSEEECCT------------TT---HHHHHHHSCTTSEEEECCCCTTC--------CCSHHHHHHT-T
T ss_pred HHHHHHHHHHcCCCEEEECH------------HH---HHHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHHHc-C
Confidence 34677888899999976621 11 456676653 4578889987221 34455665 9
Q ss_pred cceeeeehHHhhCCccch
Q 013813 310 CEGVLSAESLLENPALFA 327 (436)
Q Consensus 310 aDgVmIGRgal~nP~lf~ 327 (436)
+|.+++||+++..++-..
T Consensus 224 Ad~iVvGr~I~~a~dp~~ 241 (303)
T 3ru6_A 224 SDYIVVGRPIYKNENPRA 241 (303)
T ss_dssp CSEEEECHHHHTSSCHHH
T ss_pred CCEEEEChHHhCCCCHHH
Confidence 999999999998766433
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.45 Score=45.58 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=59.3
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
+.+...+-| +.+++|+|.||||+| +......+.+.+++..+...+++||+|-.. + .+.++
T Consensus 23 ~~~~a~~~a~~~v~~GAdiIDIg~g------------~~~v~~~ee~~rvv~~i~~~~~~pisIDT~------~-~~v~~ 83 (262)
T 1f6y_A 23 DPAPVQEWARRQEEGGARALDLNVG------------PAVQDKVSAMEWLVEVTQEVSNLTLCLDST------N-IKAIE 83 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECS------C-HHHHH
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCC------------CCCCChHHHHHHHHHHHHHhCCCeEEEeCC------C-HHHHH
Confidence 455555545 567789999999974 333456788899999998877999999832 1 13344
Q ss_pred HHHHc--CccEEE-eccCcccccCCCCCccCHHHHHHHHhhCCCcEEE
Q 013813 247 MLEDA--GCSLLA-VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 291 (436)
Q Consensus 247 ~le~a--G~d~I~-VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia 291 (436)
.+.++ |++.|. |.|-. -+++.+..+....+.|+++
T Consensus 84 aAl~a~~Ga~iINdvs~~~----------d~~~~~~~~~a~~~~~vvl 121 (262)
T 1f6y_A 84 AGLKKCKNRAMINSTNAER----------EKVEKLFPLAVEHGAALIG 121 (262)
T ss_dssp HHHHHCSSCEEEEEECSCH----------HHHHHHHHHHHHTTCEEEE
T ss_pred HHHhhCCCCCEEEECCCCc----------ccHHHHHHHHHHhCCcEEE
Confidence 44455 888773 55431 1232344455556788776
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.091 Score=53.33 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+.++.+.++|+|.|.++.-. +.+ ...|+.++.+++.+ ++||++ |++.+.++++.+.+. |+|+|.+|
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~-----g~~-~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~~-Gad~I~vg 222 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAH-----GHS-TRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISV-GADCLKVG 222 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSC-----CSS-HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTT-TCSEEEEC
T ss_pred hHHHHHHHHHHCCCCEEEEeCCC-----CCh-HHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHhc-CCCEEEEC
Confidence 34566778889999999985321 111 23478899999988 899987 778999999988875 99999994
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.35 Score=49.24 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=85.4
Q ss_pred HcCCCcEEEEecCC-CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 179 VEPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 179 v~~g~D~IdLN~GC-P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
.+.|+..+-+..|- |. .|. .+++.-.+.++++++.+ ++++.|...-+++..+++++++.+++.++.+
T Consensus 171 ~~~Gf~~~K~Kv~~g~~-------~g~---~~~~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~~~~~~Le~~~l~~ 240 (404)
T 3ekg_A 171 QKMGFIGGKMPLHHGPS-------EGE---EGLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYGLKW 240 (404)
T ss_dssp HHTTCSEEEEECCCCGG-------GHH---HHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCE
T ss_pred HHcCCCEEEEecCCCCc-------ccc---ccHHHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHHHHHHHHhhcCCcE
Confidence 35689998887641 21 011 12345566778888877 5788888888899999999999999999887
Q ss_pred EEeccCcccccCCCCCccCHHHHHHHHhhCCCcE-EEcc-CCCCHHHHHHHHHhcCcceeee
Q 013813 256 LAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV-LANG-NVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 256 I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPV-ianG-GI~s~eda~~~l~~tGaDgVmI 315 (436)
| ++... +-|++..+++++.+++|| |+.| .+.+..++.++++...+|.|++
T Consensus 241 i-------EeP~~---~~d~~~~a~l~~~~~~pi~Ia~gE~~~~~~~~~~li~~~a~dii~~ 292 (404)
T 3ekg_A 241 I-------EEALP---PDDYWGYAELRRNAPTGMMVTTGEHEATRWGFRMLLEMGCCDIIQP 292 (404)
T ss_dssp E-------ECCSC---TTCHHHHHHHHHHSCTTCEEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred E-------ecCCC---cccHHHHHHHHHhcCCCeEEEecCccCCHHHHHHHHHcCCCCeEec
Confidence 7 22111 347888999999988884 4444 5889999999999867888764
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.82 Score=44.45 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCHHHHHHHH---HHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHH
Q 013813 167 NDPEILLNAA---RRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 167 ~d~e~~~~AA---~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~ 242 (436)
.+.+++.... +.+ +.|+|+|-+.+--|.. --|.+.+.++++... +++|+.= |..+...+..
T Consensus 105 Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg-----------~iD~~~~~~Li~~a~---~l~vTFH-RAFD~~~d~~ 169 (287)
T 3iwp_A 105 YSDREIEVMKADIRLAKLYGADGLVFGALTEDG-----------HIDKELCMSLMAICR---PLPVTFH-RAFDMVHDPM 169 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS-----------CBCHHHHHHHHHHHT---TSCEEEC-GGGGGCSCHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCC-----------CcCHHHHHHHHHHcC---CCcEEEE-CchhccCCHH
Confidence 3455555444 333 4599998876533431 136788888888754 3677654 3332223456
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+..+.+.+.|++.|-.+|-.... ...++.++++.+.. +|+|++.|||+ .+.+.++++.+|++.+=.
T Consensus 170 ~Ale~Li~lGvdrILTSG~~~~a------~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~-~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 170 AALETLLTLGFERVLTSGCDSSA------LEGLPLIKRLIEQAKGRIVVMPGGGIT-DRNLQRILEGSGATEFHC 237 (287)
T ss_dssp HHHHHHHHHTCSEEEECTTSSST------TTTHHHHHHHHHHHTTSSEEEECTTCC-TTTHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHcCCCEEECCCCCCCh------HHhHHHHHHHHHHhCCCCEEEECCCcC-HHHHHHHHHhhCCCEEeE
Confidence 66777888899999777752221 23467777776654 49999999997 477888888789987654
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.21 Score=45.24 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=60.6
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHH
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~ 304 (436)
.|+.+=+|. .+.++..++++.+.+.|++.|.+|.++.. ..+.++.+++..+ -.+++.|-+.++++++.+
T Consensus 10 ~~~i~~~~~-~~~~~~~~~~~~~~~~G~~~iev~~~~~~---------~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a 79 (205)
T 1wa3_A 10 HKIVAVLRA-NSVEEAKEKALAVFEGGVHLIEITFTVPD---------ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKA 79 (205)
T ss_dssp HCEEEEECC-SSHHHHHHHHHHHHHTTCCEEEEETTSTT---------HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHH
T ss_pred CCEEEEEec-CCHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHHHCCCCcEEEecccCCHHHHHHH
Confidence 366555554 46688899999999999999999977521 1355777877642 235677788999999999
Q ss_pred HHhcCcceeeeehH
Q 013813 305 LEETGCEGVLSAES 318 (436)
Q Consensus 305 l~~tGaDgVmIGRg 318 (436)
.+. |+|.| ++-+
T Consensus 80 ~~~-Gad~i-v~~~ 91 (205)
T 1wa3_A 80 VES-GAEFI-VSPH 91 (205)
T ss_dssp HHH-TCSEE-ECSS
T ss_pred HHc-CCCEE-EcCC
Confidence 886 99999 7644
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.6 Score=45.18 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=59.2
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCcc-EEEeccCcccccC--CCCCc--cCHHHHHHHHhhCCCcEEE--ccCCCC
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVHGRTRDEKD--GKKFR--ADWNAIKAVKNALRIPVLA--NGNVRH 297 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d-~I~VHgRt~~~~~--~~~g~--ad~~~i~~ik~~~~iPVia--nGGI~s 297 (436)
+.|+.+-+. +.+.++..+.++.++++|+| +|.+|--...... .+.+. .-++.++.+++.+++||+. ..++ +
T Consensus 93 ~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~-~ 170 (311)
T 1jub_A 93 EGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYF-D 170 (311)
T ss_dssp SSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCC-S
T ss_pred CCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCC-C
Confidence 688888764 56778889999999999999 9999753211100 01001 1146677777777889874 5555 5
Q ss_pred HHHH---HHHHHhcCcceeeee
Q 013813 298 MEDV---QKCLEETGCEGVLSA 316 (436)
Q Consensus 298 ~eda---~~~l~~tGaDgVmIG 316 (436)
.+++ .+.+++.|+|+|.+-
T Consensus 171 ~~~~~~~a~~~~~~G~d~i~v~ 192 (311)
T 1jub_A 171 LVHFDIMAEILNQFPLTYVNSV 192 (311)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEC
T ss_pred HHHHHHHHHHHHHcCCcEEEec
Confidence 5554 344555699998763
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.41 Score=46.20 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcccCccEEEEeccC-CChhhHHHHHHHHHHcCccEEEeccCcccccCCCC---------------CccCH
Q 013813 212 LVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK---------------FRADW 275 (436)
Q Consensus 212 ~v~eIv~av~~~~~iPVsVKiRlg-~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~---------------g~ad~ 275 (436)
.+.+.++.+++.-...+..=+-.| ++.+.+.++++.++++|+|.|-+---..++...++ ..--+
T Consensus 6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~ 85 (271)
T 3nav_A 6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICF 85 (271)
T ss_dssp HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 456666776655444555554455 57889999999999999999988432222211110 01125
Q ss_pred HHHHHHHhh-CCCcEEEccCCC-----CHHHHHHHHHhcCcceeeeeh
Q 013813 276 NAIKAVKNA-LRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 276 ~~i~~ik~~-~~iPVianGGI~-----s~eda~~~l~~tGaDgVmIGR 317 (436)
+.++++++. +++||++-|=.+ ..+...+.+.+.|+|||.+.-
T Consensus 86 ~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipD 133 (271)
T 3nav_A 86 ELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIAD 133 (271)
T ss_dssp HHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECC
Confidence 778888887 799998865221 224333334445999999853
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.6 Score=45.27 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=68.1
Q ss_pred EEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE-EEeccCC--
Q 013813 161 FVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS-CKIRVFP-- 236 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs-VKiRlg~-- 236 (436)
++-+...|.- .|++++ .|+|.| + .|....++.-| |-.-+.-..+.+...+++|++.++.|+. +.+-.|.
T Consensus 36 i~~~tayDa~----sA~l~e~aG~d~i-l-vGdSl~~~~lG-~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~ 108 (281)
T 1oy0_A 36 WAMLTAYDYS----TARIFDEAGIPVL-L-VGDSAANVVYG-YDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYE 108 (281)
T ss_dssp EEEEECCSHH----HHHHHHTTTCCEE-E-ECTTHHHHTTC-CSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSST
T ss_pred EEEEeCcCHH----HHHHHHHcCCCEE-E-ECHHHHHHHcC-CCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCccc
Confidence 3456666754 245554 489998 4 46555554433 4445555667777778888887775654 4433322
Q ss_pred -ChhhHHHH-HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE
Q 013813 237 -NLQDTIKY-AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 290 (436)
Q Consensus 237 -~~~d~~~~-ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi 290 (436)
+.+++.+- .+.++++|+++|.+-+.. .-.+.|+.+.+. +|||+
T Consensus 109 ~s~~~a~~na~rl~~eaGa~aVklEdg~----------e~~~~I~al~~a-gIpV~ 153 (281)
T 1oy0_A 109 AGPTAALAAATRFLKDGGAHAVKLEGGE----------RVAEQIACLTAA-GIPVM 153 (281)
T ss_dssp TCHHHHHHHHHHHHHTTCCSEEEEEBSG----------GGHHHHHHHHHH-TCCEE
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEECCcH----------HHHHHHHHHHHC-CCCEE
Confidence 34555553 455566999999997652 113456666553 78887
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.51 Score=44.15 Aligned_cols=89 Identities=22% Similarity=0.244 Sum_probs=65.9
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
|+..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++++++...--+++.|-+.+.++++.+++
T Consensus 18 ~ii~vir~-~~~~~~~~~~~al~~gGv~~iel~~k~~---------~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~ 87 (224)
T 1vhc_A 18 KIVPVIAL-DNADDILPLADTLAKNGLSVAEITFRSE---------AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKS 87 (224)
T ss_dssp CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHH
T ss_pred CeEEEEeC-CCHHHHHHHHHHHHHcCCCEEEEeccCc---------hHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHH
Confidence 55554555 4668889999999999999998864432 2356788888876445677778999999999998
Q ss_pred hcCcceeeeehHHhhCCccchhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i 329 (436)
. |||+|.+|. .|+.+....
T Consensus 88 a-GAd~v~~p~---~d~~v~~~a 106 (224)
T 1vhc_A 88 S-GADFVVTPG---LNPKIVKLC 106 (224)
T ss_dssp H-TCSEEECSS---CCHHHHHHH
T ss_pred C-CCCEEEECC---CCHHHHHHH
Confidence 7 999999883 455544433
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=93.61 E-value=1.1 Score=43.51 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=91.6
Q ss_pred EEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-Ch
Q 013813 161 FVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NL 238 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~ 238 (436)
++=+...|.-. |++++ .|||+|=+--. ...++ -|+-....-..+.+...++.|.+.+++||++-+-.|. +.
T Consensus 17 i~~~~a~D~~s----A~~~~~aG~~ai~vs~~-~~a~~--~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~ 89 (290)
T 2hjp_A 17 FTAMAAHNPLV----AKLAEQAGFGGIWGSGF-ELSAS--YAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNA 89 (290)
T ss_dssp EEEEECSSHHH----HHHHHHHTCSEEEECHH-HHHHH--TTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSH
T ss_pred EEEecCCCHHH----HHHHHHcCCCEEEEChH-HHHHh--CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCH
Confidence 34466667543 33443 48998876521 11112 2233333456778888889999999999999988874 45
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCC-----CCccCH-HHHHHHH---hhC---CCcEEEccCCC----CHHHHH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFRADW-NAIKAVK---NAL---RIPVLANGNVR----HMEDVQ 302 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~-----~g~ad~-~~i~~ik---~~~---~iPVianGGI~----s~eda~ 302 (436)
+++.+.++.+.++|+++|.+-+.....+.+. +.-... +.+.+|+ +.. +.-|++=-+-. ..+++.
T Consensus 90 ~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai 169 (290)
T 2hjp_A 90 VNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAV 169 (290)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHH
Confidence 6778889999999999999976653211111 111222 3344444 432 33344433322 134443
Q ss_pred ----HHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 303 ----KCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 303 ----~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.+.+ .|||+|++=-+ +.++..++++.
T Consensus 170 ~Ra~ay~e-AGAd~i~~e~~-~~~~~~~~~i~ 199 (290)
T 2hjp_A 170 RRGQAYEE-AGADAILIHSR-QKTPDEILAFV 199 (290)
T ss_dssp HHHHHHHH-TTCSEEEECCC-CSSSHHHHHHH
T ss_pred HHHHHHHH-cCCcEEEeCCC-CCCHHHHHHHH
Confidence 3334 49999987321 24455555544
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.56 Score=46.77 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHhcccCccEEEEeccCCC---------------------------------hhhHHHHHHHHHHcCcc
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRVFPN---------------------------------LQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRlg~~---------------------------------~~d~~~~ak~le~aG~d 254 (436)
..++.+.+.++.+++.++.|+.|.+=.... .....+.++.+.+.|++
T Consensus 45 ~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 124 (369)
T 3bw2_A 45 KTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVP 124 (369)
T ss_dssp SCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCC
Confidence 357888888888887777777776522111 01134567778889999
Q ss_pred EEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee-eh
Q 013813 255 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS-AE 317 (436)
Q Consensus 255 ~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI-GR 317 (436)
.|.+|+.. ..++.++.+++ .+++|+. .+.+.++++.+.+. |+|+|.+ |+
T Consensus 125 ~V~~~~g~----------~~~~~i~~~~~-~g~~v~~--~v~t~~~a~~a~~~-GaD~i~v~g~ 174 (369)
T 3bw2_A 125 VVSFHFGV----------PDREVIARLRR-AGTLTLV--TATTPEEARAVEAA-GADAVIAQGV 174 (369)
T ss_dssp EEEEESSC----------CCHHHHHHHHH-TTCEEEE--EESSHHHHHHHHHT-TCSEEEEECT
T ss_pred EEEEeCCC----------CcHHHHHHHHH-CCCeEEE--ECCCHHHHHHHHHc-CCCEEEEeCC
Confidence 99998642 23577888876 4778776 57899999887775 9999998 64
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=93.56 E-value=1.6 Score=40.90 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=74.8
Q ss_pred EEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc--cCc--c--EEEEecc
Q 013813 162 VQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LNV--P--VSCKIRV 234 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~--~~i--P--VsVKiRl 234 (436)
+-++ ..|+....+++.+ +.|+|.|.+|.- ++ .+.+..+++.+++. .+. | +.|-...
T Consensus 61 ~kl~-Dip~t~~~~~~~~~~~Gad~vtvH~~-----------~g-----~~~l~~~~~~~~~~~~~g~~~~~~~~V~~~t 123 (239)
T 1dbt_A 61 LKLH-DIPTTVNKAMKRLASLGVDLVNVHAA-----------GG-----KKMMQAALEGLEEGTPAGKKRPSLIAVTQLT 123 (239)
T ss_dssp EEEC-SCHHHHHHHHHHHHTTTCSEEEEEGG-----------GC-----HHHHHHHHHHHHHHSCTTSCCCEEEEECSCT
T ss_pred eccc-cchHHHHHHHHHHHhcCCCEEEEeCc-----------CC-----HHHHHHHHHHHHhhhccCCCCccEEEEEEcC
Confidence 5665 5677777666544 568999999952 11 12344555555443 133 4 4444333
Q ss_pred CCChhhH--------------HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHH
Q 013813 235 FPNLQDT--------------IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHME 299 (436)
Q Consensus 235 g~~~~d~--------------~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~e 299 (436)
..+.++. ..++....+.|.+.++... +.++.+++.. +.+++..|||+.-.
T Consensus 124 s~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~v~~~---------------~~i~~lr~~~~~~~i~v~gGI~~~~ 188 (239)
T 1dbt_A 124 STSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSV---------------HEAKAIYQAVSPSFLTVTPGIRMSE 188 (239)
T ss_dssp TCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCG---------------GGHHHHTTTSCTTCEEEECCBCCTT
T ss_pred CCCHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEEEECH---------------HHHHHHHHhcCCCcEEEeCCcCCCC
Confidence 2221111 1222223456666654332 1245566655 36899999998533
Q ss_pred H----------HHHHHHhcCcceeeeehHHhhCCc
Q 013813 300 D----------VQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 300 d----------a~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
. ..++++. |+|.+.+||+++..++
T Consensus 189 ~~~~dq~rv~tp~~a~~a-Gad~iVvGr~I~~a~d 222 (239)
T 1dbt_A 189 DAANDQVRVATPAIAREK-GSSAIVVGRSITKAED 222 (239)
T ss_dssp SCCTTCSSCBCHHHHHHT-TCSEEEECHHHHTSSC
T ss_pred CCccceeccCCHHHHHHc-CCCEEEEChhhcCCCC
Confidence 2 2666765 9999999999998665
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.59 Score=47.06 Aligned_cols=43 Identities=23% Similarity=0.601 Sum_probs=38.2
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.|+.+++.+++||+.- ||.+.++++.+.+. |+|+|.++
T Consensus 211 ~~~~~~i~~i~~~~~~Pv~vk-gv~t~e~a~~a~~a-Gad~I~vs 253 (380)
T 1p4c_A 211 SFNWEALRWLRDLWPHKLLVK-GLLSAEDADRCIAE-GADGVILS 253 (380)
T ss_dssp TCCHHHHHHHHHHCCSEEEEE-EECCHHHHHHHHHT-TCSEEEEC
T ss_pred cccHHHHHHHHHhcCCCEEEE-ecCcHHHHHHHHHc-CCCEEEEc
Confidence 467999999999999999976 48999999999986 99999994
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.29 Score=45.99 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=53.4
Q ss_pred HHHHcCccEEEeccCcccccCC--CCCccC-HHHHH-HHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDG--KKFRAD-WNAIK-AVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~--~~g~ad-~~~i~-~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
.+...+.+.|-+-.|..-+... .+..++ .+.+. .+++.. +++|++.|||++.++++.+... |+||+.||++++.
T Consensus 132 ~~~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~-~vDG~LVG~a~l~ 210 (225)
T 1hg3_A 132 AVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIEL-GTVGVLLASGVTK 210 (225)
T ss_dssp HHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEESHHHHT
T ss_pred HHhcCCCCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhC-CCCEEEeCHHHHC
Confidence 3456677777777765543210 111222 22222 233333 6899999999999999888775 9999999999998
Q ss_pred CCccchh
Q 013813 322 NPALFAG 328 (436)
Q Consensus 322 nP~lf~~ 328 (436)
-+++..-
T Consensus 211 a~~~~~~ 217 (225)
T 1hg3_A 211 AKDPEKA 217 (225)
T ss_dssp CSSHHHH
T ss_pred CcCHHHH
Confidence 7765543
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.53 Score=45.50 Aligned_cols=157 Identities=16% Similarity=0.135 Sum_probs=94.2
Q ss_pred EEEecCCCHHHHHHHHHHHc-CCCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC--
Q 013813 161 FVQFCANDPEILLNAARRVE-PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-- 236 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~-~g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-- 236 (436)
++=+...|.-. |++++ .|||.|=+- .+.- . .-||-....-..+.+...++.|.+.+++||++-+-.|.
T Consensus 18 i~~~~a~D~~s----A~~~~~aG~~ai~vsg~s~a--~--~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~ 89 (275)
T 2ze3_A 18 FLLPNAWDVAS----ARLLEAAGFTAIGTTSAGIA--H--ARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGH 89 (275)
T ss_dssp EEECEESSHHH----HHHHHHHTCSCEEECHHHHH--H--HSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSS
T ss_pred eeEecccCHHH----HHHHHHcCCCEEEECcHHHH--H--hCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCC
Confidence 44455566543 23333 488888776 2211 1 12233333446677888888888888999999998874
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH----HHHHHHHhh---CCCcEEEccCCCCH---------HH
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAIKAVKNA---LRIPVLANGNVRHM---------ED 300 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~----~~i~~ik~~---~~iPVianGGI~s~---------ed 300 (436)
+.+++.+.++.+.++|+.+|.+-+..... + +.-.+. +.|+.+++. .++|++.+|..... +.
T Consensus 90 ~~~~~~~~v~~l~~aGaagv~iED~~~~~--~-k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~ 166 (275)
T 2ze3_A 90 APEDVRRTVEHFAALGVAGVNLEDATGLT--P-TELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEER 166 (275)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECBCSSS--S-SCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCcCCC--C-CccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhh
Confidence 45678888999999999999997654311 1 111222 233444433 26888888865541 12
Q ss_pred HHHHH------HhcCcceeeeehHHhhCCccchhhh
Q 013813 301 VQKCL------EETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 301 a~~~l------~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+++++ .+.|||+|++= + +.++..++++.
T Consensus 167 ~~~ai~Ra~ay~eAGAd~i~~e-~-~~~~~~~~~i~ 200 (275)
T 2ze3_A 167 LAETVRRGQAYADAGADGIFVP-L-ALQSQDIRALA 200 (275)
T ss_dssp HHHHHHHHHHHHHTTCSEEECT-T-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEC-C-CCCHHHHHHHH
Confidence 33322 23499999873 2 34445555554
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.69 Score=42.86 Aligned_cols=87 Identities=25% Similarity=0.345 Sum_probs=66.0
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
||..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++++++...-.+++.|-|.+.++++.+++
T Consensus 17 ~~i~v~r~-~~~~~~~~~~~al~~gGv~~iel~~k~~---------~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~ 86 (214)
T 1wbh_A 17 PVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRTE---------CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTE 86 (214)
T ss_dssp SEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCST---------THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHH
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHcCCCEEEEeCCCh---------hHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHH
Confidence 55555555 4567889999999999999998875432 2256788888877555777888999999999999
Q ss_pred hcCcceeeeehHHhhCCccch
Q 013813 307 ETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~ 327 (436)
. |||+|.+|. .++.+..
T Consensus 87 a-GAd~v~~p~---~d~~v~~ 103 (214)
T 1wbh_A 87 A-GAQFAISPG---LTEPLLK 103 (214)
T ss_dssp H-TCSCEEESS---CCHHHHH
T ss_pred c-CCCEEEcCC---CCHHHHH
Confidence 7 999999883 4555443
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.47 Score=48.06 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=72.1
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc-cEEEeccCcccccCCCCCccCHHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKA 280 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~-d~I~VHgRt~~~~~~~~g~ad~~~i~~ 280 (436)
-||.-++|..+++++- ..++||.+|.-.. +.++....++.+.+.|. +.+.+|+-+.-+. .....|+..|..
T Consensus 140 IgS~~~~N~pLL~~va-----~~gKPViLStGma-Tl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPt--p~~~~nL~aI~~ 211 (385)
T 1vli_A 140 IASYEINHLPLLKYVA-----RLNRPMIFSTAGA-EISDVHEAWRTIRAEGNNQIAIMHCVAKYPA--PPEYSNLSVIPM 211 (385)
T ss_dssp ECGGGTTCHHHHHHHH-----TTCSCEEEECTTC-CHHHHHHHHHHHHTTTCCCEEEEEECSSSSC--CGGGCCTTHHHH
T ss_pred ECcccccCHHHHHHHH-----hcCCeEEEECCCC-CHHHHHHHHHHHHHCCCCcEEEEeccCCCCC--ChhhcCHHHHHH
Confidence 3677788988877664 3589999996554 77888888889999998 6666686433222 122578999999
Q ss_pred HHhhC-CCcEEEccCCCC-HHHHHHHHHhcCcc
Q 013813 281 VKNAL-RIPVLANGNVRH-MEDVQKCLEETGCE 311 (436)
Q Consensus 281 ik~~~-~iPVianGGI~s-~eda~~~l~~tGaD 311 (436)
+++.. ++||..++=-.. ..-+...+.. ||+
T Consensus 212 Lk~~f~~lpVG~SdHt~G~~~~~~AAvAl-GA~ 243 (385)
T 1vli_A 212 LAAAFPEAVIGFSDHSEHPTEAPCAAVRL-GAK 243 (385)
T ss_dssp HHHHSTTSEEEEEECCSSSSHHHHHHHHT-TCS
T ss_pred HHHHcCCCCEEeCCCCCCchHHHHHHHHc-CCC
Confidence 99998 899977653333 4555566654 888
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=1.4 Score=41.35 Aligned_cols=130 Identities=13% Similarity=0.187 Sum_probs=74.0
Q ss_pred EEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc--cC--cc--EEEEecc
Q 013813 162 VQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LN--VP--VSCKIRV 234 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~--~~--iP--VsVKiRl 234 (436)
+-++ ..|+....+++.+ +.|+|.|.+|.-. | .+.+...++.+++. .+ .+ +.|....
T Consensus 62 ~kl~-Dip~t~~~~~~~~~~~Gad~vTvH~~~----------g------~~~l~~~~~~~~~~~~~G~~~~~~lav~~~T 124 (246)
T 2yyu_A 62 LKLH-DIPNTVKQAMKGLARVGADLVNVHAAG----------G------RRMMEAAIEGLDAGTPSGRMRPRCIAVTQLT 124 (246)
T ss_dssp EEEC-SCHHHHHHHHHHHHHTTCSEEEEEGGG----------C------HHHHHHHHHHHHHHSCSSSCCCEEEEESSCT
T ss_pred eecc-cchHHHHHHHHHHHhcCCCEEEEECCC----------C------HHHHHHHHHHHHhhcccCCcCCCEEEEEeCC
Confidence 5565 5677766666544 5689999999521 1 23345566666541 23 34 3333222
Q ss_pred CCChhhH--------------HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCH-
Q 013813 235 FPNLQDT--------------IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHM- 298 (436)
Q Consensus 235 g~~~~d~--------------~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~- 298 (436)
..+.++. ..++....+.|.+.++.. . ++ ++.+++.. ..+++..|||+.-
T Consensus 125 s~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~------------~--~e-i~~lr~~~~~~~i~V~gGI~~~g 189 (246)
T 2yyu_A 125 STDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCS------------A--NE-AAFIKERCGASFLAVTPGIRFAD 189 (246)
T ss_dssp TCCHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECC------------H--HH-HHHHHHHHCTTSEEEECCCCCCC
T ss_pred CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeC------------H--HH-HHHHHHhcCCCCEEEeCCcCCCC
Confidence 2111111 112222345666654321 1 34 66666654 3568999999842
Q ss_pred H---------HHHHHHHhcCcceeeeehHHhhCCc
Q 013813 299 E---------DVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 299 e---------da~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
. .+.++++. |+|.+.+||+++..++
T Consensus 190 ~~~~dq~rv~t~~~a~~a-Gad~iVvGr~I~~a~d 223 (246)
T 2yyu_A 190 DAAHDQVRVVTPRKARAL-GSDYIVIGRSLTRAAD 223 (246)
T ss_dssp -------CCCCHHHHHHH-TCSEEEECHHHHTSSS
T ss_pred CCcccccccCCHHHHHHc-CCCEEEECHhhcCCCC
Confidence 0 35666665 9999999999998655
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.32 Score=45.75 Aligned_cols=126 Identities=20% Similarity=0.119 Sum_probs=73.5
Q ss_pred cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 180 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 180 ~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
+.|+|+|-|+...- |-.+| .+.+.++... ..++-+.|- .|...+ . +.+...+.+.|-+-
T Consensus 83 ~~Ga~~VllghseR-----R~~~~--------e~~~k~~~A~-~~GL~~ivc--Vge~~e----~-~~~~~~~~~iIaye 141 (226)
T 1w0m_A 83 EAGGSGVILNHSEA-----PLKLN--------DLARLVAKAK-SLGLDVVVC--APDPRT----S-LAAAALGPHAVAVE 141 (226)
T ss_dssp HHTCCEEEECCTTS-----CCBHH--------HHHHHHHHHH-HTTCEEEEE--ESSHHH----H-HHHHHTCCSEEEEC
T ss_pred HcCCCEEEEeeeec-----cCCHH--------HHHHHHHHHH-HCCCEEEEE--eCCHHH----H-HHHhcCCCCEEEEc
Confidence 34899999885431 11111 2444444433 235554454 333222 1 33456677777776
Q ss_pred cCcccccCCCCCccCHHHHH----HHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 260 GRTRDEKDGKKFRADWNAIK----AVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 260 gRt~~~~~~~~g~ad~~~i~----~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
.|..-+....-..+.-+.+. .+++.. +++|++.|||++.++++.+... |+||+.||++++.-+++..
T Consensus 142 p~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~-giDG~LVG~a~l~a~~~~~ 213 (226)
T 1w0m_A 142 PPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRL-GTRGVLLASAAVKAKDPYA 213 (226)
T ss_dssp CGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEECHHHHTCSSHHH
T ss_pred ChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhC-CCCEEEECHHHHCCcCHHH
Confidence 66544221000022233222 233333 6899999999999999988775 9999999999998766544
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.81 Score=51.86 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=69.8
Q ss_pred HHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC--CC--C----CccCHHHHHHHHhhCCC
Q 013813 217 VEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD--GK--K----FRADWNAIKAVKNALRI 287 (436)
Q Consensus 217 v~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~--~~--~----g~ad~~~i~~ik~~~~i 287 (436)
++.+++.. +.|+.+=+-.+.+.++..+.++.++++|+|+|.||.-...... ++ . ...-++.++.+++.+++
T Consensus 625 i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~ 704 (1025)
T 1gte_A 625 VTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQI 704 (1025)
T ss_dssp HHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCC
Confidence 44555544 6788888766777888889999999999999999854322110 10 0 01235678888888889
Q ss_pred cEE--EccCCCCHHHHHHHHHhcCcceeee
Q 013813 288 PVL--ANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 288 PVi--anGGI~s~eda~~~l~~tGaDgVmI 315 (436)
||+ ...++.+..++.+.+.+.|+|+|.+
T Consensus 705 Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v 734 (1025)
T 1gte_A 705 PFFAKLTPNVTDIVSIARAAKEGGADGVTA 734 (1025)
T ss_dssp CEEEEECSCSSCHHHHHHHHHHHTCSEEEE
T ss_pred ceEEEeCCChHHHHHHHHHHHHcCCCEEEE
Confidence 988 4667777777666666679999988
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=92.83 E-value=0.85 Score=44.52 Aligned_cols=163 Identities=12% Similarity=0.154 Sum_probs=93.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
.|+ +=+...|.-. |+++ +.|||.|=+--. ...++. -|+-....-..+.+...++.|.+.+++||++-+-.|.
T Consensus 17 ~~i-~~~~a~D~~s----A~~~~~aG~~ai~vs~~-~~a~~~-~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gy 89 (295)
T 1xg4_A 17 NPL-QIVGTINANH----ALLAQRAGYQAIYLSGG-GVAAGS-LGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGF 89 (295)
T ss_dssp SSE-EEEECSSHHH----HHHHHHTTCSCEEECHH-HHHHTT-TCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCS
T ss_pred CcE-EEecCcCHHH----HHHHHHcCCCEEEECch-Hhhhhh-cCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCccc
Confidence 444 4466667553 3344 358998866521 111111 1233333445677888888888888999999988774
Q ss_pred --ChhhHHHHHHHHHHcCccEEEeccCcccccCCCC----CccCHHHHHHHH---hhC-CCcEEEccCCCCH--------
Q 013813 237 --NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK----FRADWNAIKAVK---NAL-RIPVLANGNVRHM-------- 298 (436)
Q Consensus 237 --~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~----g~ad~~~i~~ik---~~~-~iPVianGGI~s~-------- 298 (436)
+.+++.+.++.+.++|+++|.+-+.....+.+.. .-..-+.+.+|+ +.. +.+++.+|.....
T Consensus 90 g~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~a 169 (295)
T 1xg4_A 90 GSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAA 169 (295)
T ss_dssp SSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHH
Confidence 5677888899999999999999766532221111 111223444444 332 4455566654432
Q ss_pred -HHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 299 -EDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 299 -eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
++++.+.+ .|||+|++= + +.++..++++.
T Consensus 170 i~ra~ay~e-AGAd~i~~e-~-~~~~~~~~~i~ 199 (295)
T 1xg4_A 170 IERAQAYVE-AGAEMLFPE-A-ITELAMYRQFA 199 (295)
T ss_dssp HHHHHHHHH-TTCSEEEET-T-CCSHHHHHHHH
T ss_pred HHHHHHHHH-cCCCEEEEe-C-CCCHHHHHHHH
Confidence 23334444 599999873 2 23444555444
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=92.81 E-value=0.61 Score=47.58 Aligned_cols=95 Identities=7% Similarity=0.038 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-
Q 013813 210 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR- 286 (436)
Q Consensus 210 p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~- 286 (436)
++.-.+.++++++++ ++.+.+-..-+++.++++++++.+++.++.+| ++.. .+-||+..+++++.++
T Consensus 205 ~~~d~~~v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i~~i-------EqPl---~~~d~~~~~~l~~~~~~ 274 (415)
T 2p3z_A 205 IRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNLKWI-------EECL---PPQQYEGYRELKRNAPA 274 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEE-------ECCS---CTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCceE-------eCCC---CcchHHHHHHHHHhcCC
Confidence 344456667777665 46777776667888999999999999988776 2211 1347899999999887
Q ss_pred -CcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 287 -IPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 287 -iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+||.+.=.+.+..+++++++.. +|.|.+
T Consensus 275 ~ipIa~dE~~~~~~~~~~~i~~~-~d~i~i 303 (415)
T 2p3z_A 275 GMMVTSGEHHGTLQSFRTLAETG-IDIMQP 303 (415)
T ss_dssp TCEEEECTTCCSHHHHHHHHHTT-CSEECC
T ss_pred CCcEEcCCCCCCHHHHHHHHHcC-CCEEEe
Confidence 8988888899999999999985 998875
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=92.76 E-value=1.2 Score=41.52 Aligned_cols=137 Identities=12% Similarity=0.017 Sum_probs=76.0
Q ss_pred CCCEEEEecC-CCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DRPLFVQFCA-NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g-~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.++++=+-- -.|+....+++. .+.|+|.|.+|.- ++ .+.+...++.+++. +.-|++=..+
T Consensus 64 g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~-----------~G-----~~~l~~~~~~~~~~-g~~v~vLt~~ 126 (228)
T 3m47_A 64 GCRIIADFKVADIPETNEKICRATFKAGADAIIVHGF-----------PG-----ADSVRACLNVAEEM-GREVFLLTEM 126 (228)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEST-----------TC-----HHHHHHHHHHHHHH-TCEEEEECCC
T ss_pred CCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEecc-----------CC-----HHHHHHHHHHHHhc-CCCeEEEEeC
Confidence 3456644433 345666666654 4569999999942 21 23445555554432 3335543233
Q ss_pred CC-C----h-hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEccCCCCH-HHHHHHH
Q 013813 235 FP-N----L-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHM-EDVQKCL 305 (436)
Q Consensus 235 g~-~----~-~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianGGI~s~-eda~~~l 305 (436)
.. + . +-...+++...+.|++++.+.+ +. -+.++.+++..+ .++ ..+||..- .+. +++
T Consensus 127 s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~a-t~-----------~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~ 192 (228)
T 3m47_A 127 SHPGAEMFIQGAADEIARMGVDLGVKNYVGPS-TR-----------PERLSRLREIIGQDSFL-ISPGVGAQGGDP-GET 192 (228)
T ss_dssp CSGGGGTTHHHHHHHHHHHHHHTTCCEEECCS-SC-----------HHHHHHHHHHHCSSSEE-EECC----------CG
T ss_pred CCccHHHHHHHHHHHHHHHHHHhCCcEEEECC-CC-----------hHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHH
Confidence 21 1 1 1234678888899999986643 21 134667777654 444 77777632 245 666
Q ss_pred HhcCcceeeeehHHhhCCcc
Q 013813 306 EETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~nP~l 325 (436)
+. |+|.+.+||+++..++.
T Consensus 193 ~a-Gad~iVvGr~I~~a~dp 211 (228)
T 3m47_A 193 LR-FADAIIVGRSIYLADNP 211 (228)
T ss_dssp GG-TCSEEEECHHHHTSSCH
T ss_pred Hc-CCCEEEECHHHhCCCCH
Confidence 54 99999999999875543
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=92.69 E-value=0.28 Score=50.30 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=56.8
Q ss_pred cCCChhhHHHHHHHHHH-cCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEcc-CCCCHHHHHHHHHhcC
Q 013813 234 VFPNLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANG-NVRHMEDVQKCLEETG 309 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~-aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianG-GI~s~eda~~~l~~tG 309 (436)
.+++.++++++++.+++ .++.+| ++.. .+-||+..+++++.+ ++||.+.= -+.+.+++.++++...
T Consensus 265 ~~~t~~~ai~~~~~L~~~~~i~~i-------EePl---~~~d~~~~~~l~~~~~~~ipIa~dEl~~~~~~~~~~~i~~~a 334 (431)
T 2fym_A 265 KAFTSEEFTHFLEELTKQYPIVSI-------EDGL---DESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGI 334 (431)
T ss_dssp EEECHHHHHHHHHHHHHHSCEEEE-------ESCS---CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhCCceEE-------ECCC---CcccHHHHHHHHHHhCCCCeEEeCCcccCCHHHHHHHHHhCC
Confidence 34677888999999987 776554 2111 135799999999988 89998777 7899999999999878
Q ss_pred cceeee
Q 013813 310 CEGVLS 315 (436)
Q Consensus 310 aDgVmI 315 (436)
+|.|++
T Consensus 335 ~d~i~i 340 (431)
T 2fym_A 335 ANSILI 340 (431)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999887
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.66 E-value=2.2 Score=41.52 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHhcccCccEEEEec-cC-C-C--------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHH
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIR-VF-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiR-lg-~-~--------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~ 277 (436)
|-+..+++++... ..++.|-.=+- +| . + ..++.+..+.+++.|+|.|.+.-.|..+.|......|++.
T Consensus 119 Ni~~Tk~vv~~ah-~~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~ 197 (288)
T 3q94_A 119 NVETTKKVVEYAH-ARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAE 197 (288)
T ss_dssp HHHHHHHHHHHHH-TTTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHH
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHH
Confidence 4455666766654 33555555432 11 1 0 2244555556678999999774444333332233579999
Q ss_pred HHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHH
Q 013813 278 IKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 278 i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRga 319 (436)
+++|++.+++|++.-||=.. .++++++++. |+--|=|++.+
T Consensus 198 L~~I~~~v~vpLVlHGgSG~~~e~i~~ai~~-Gv~KiNi~Tdl 239 (288)
T 3q94_A 198 MEQVRDFTGVPLVLHGGTGIPTADIEKAISL-GTSKINVNTEN 239 (288)
T ss_dssp HHHHHHHHCSCEEECCCTTCCHHHHHHHHHT-TEEEEEECHHH
T ss_pred HHHHHHhcCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEEChHH
Confidence 99999999999998886444 4667888875 88888777655
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.61 Score=47.41 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=73.2
Q ss_pred HHHHHHHHhccc--CccEEEEecc------CCChhhHHHHHHHHHHcCccE-EEeccCcccccCCC-CCccCHHHHHHHH
Q 013813 213 VKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSL-LAVHGRTRDEKDGK-KFRADWNAIKAVK 282 (436)
Q Consensus 213 v~eIv~av~~~~--~iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~-I~VHgRt~~~~~~~-~g~ad~~~i~~ik 282 (436)
..+.++++++.+ ++.+.+-..- +++.++++++++.+++.|+.. +-| ++.... ..+-||+..++++
T Consensus 218 d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~i-----EqP~~~~~~~~d~~~~~~l~ 292 (413)
T 1kko_A 218 LSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRMLTAIT 292 (413)
T ss_dssp HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEE-----ECCcCCCCCcccHHHHHHHH
Confidence 347888998887 3666666666 688889999999999977541 111 211100 0034788899999
Q ss_pred hh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 283 NA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 283 ~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+. .++||.+.=.+.+.+++.++++...+|.|.+=
T Consensus 293 ~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik 331 (413)
T 1kko_A 293 KELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIK 331 (413)
T ss_dssp HHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred HhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence 88 88999998899999999999998789988863
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.53 Score=47.69 Aligned_cols=90 Identities=17% Similarity=0.316 Sum_probs=59.5
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcc----------------------c--------cc----CCC-
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR----------------------D--------EK----DGK- 269 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~----------------------~--------~~----~~~- 269 (436)
+.|+.+-+=...+.+...++++.++++|++.|.|.--+. . +. ...
T Consensus 146 ~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~ 225 (392)
T 2nzl_A 146 EALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS 225 (392)
T ss_dssp TSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------
T ss_pred CCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcc
Confidence 457777753334556667788888888888876621000 0 00 000
Q ss_pred ----------CCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 270 ----------KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 270 ----------~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.....|+.|+.+++.+++||+.- ||.+.++++.+.+. |+|+|.++
T Consensus 226 ~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~~a-Gad~I~vs 280 (392)
T 2nzl_A 226 GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAK-GILRGDDAREAVKH-GLNGILVS 280 (392)
T ss_dssp CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEE-EECCHHHHHHHHHT-TCCEEEEC
T ss_pred hHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEE-ecCCHHHHHHHHHc-CCCEEEeC
Confidence 11247999999999999999886 46889999998876 99999983
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.82 Score=42.71 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=70.0
Q ss_pred HHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc
Q 013813 213 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 292 (436)
Q Consensus 213 v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian 292 (436)
..++++.+.+. ++..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++++++...--+++.
T Consensus 16 ~~~~~~~l~~~---~ii~V~r~-~~~~~~~~~~~al~~gGv~~iel~~k~~---------~~~~~i~~l~~~~~~~~iga 82 (225)
T 1mxs_A 16 AARIDAICEKA---RILPVITI-AREEDILPLADALAAGGIRTLEVTLRSQ---------HGLKAIQVLREQRPELCVGA 82 (225)
T ss_dssp HHHHHHHHHHH---SEEEEECC-SCGGGHHHHHHHHHHTTCCEEEEESSST---------HHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHC---CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEecCCc---------cHHHHHHHHHHhCcccEEee
Confidence 44555555433 55555554 4667889999999999999998864432 23467887887764446777
Q ss_pred cCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
|-+.+.++++.+++. |||+|.+|. .|+.+..
T Consensus 83 gtvl~~d~~~~A~~a-GAd~v~~p~---~d~~v~~ 113 (225)
T 1mxs_A 83 GTVLDRSMFAAVEAA-GAQFVVTPG---ITEDILE 113 (225)
T ss_dssp ECCCSHHHHHHHHHH-TCSSEECSS---CCHHHHH
T ss_pred CeEeeHHHHHHHHHC-CCCEEEeCC---CCHHHHH
Confidence 889999999999987 999999883 3554443
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.51 Score=46.21 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=34.9
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHh---cccCccEEEEe
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA---LNLNVPVSCKI 232 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~---~~~~iPVsVKi 232 (436)
+.+...+-| +.+++|+|.||||+|.+ .....+.+.+++..+. +.+++||+|-.
T Consensus 35 ~~~~a~~~A~~~v~~GAdiIDIg~g~~------------~v~~~eem~rvv~~i~~~~~~~~vpisIDT 91 (300)
T 3k13_A 35 KYDEALSIARQQVEDGALVIDVNMDDG------------LLDARTEMTTFLNLIMSEPEIARVPVMIDS 91 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCT------------TSCHHHHHHHHHHHHHTCHHHHTSCEEEEC
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC------------CCCHHHHHHHHHHHHHHhhhcCCCeEEEeC
Confidence 445555555 56788999999997532 2233455666666554 45689999984
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.72 Score=43.93 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=60.0
Q ss_pred HHHHHHHHhcc---cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCc-------------c---
Q 013813 213 VKSLVEKLALN---LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-------------A--- 273 (436)
Q Consensus 213 v~eIv~av~~~---~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~-------------a--- 273 (436)
+.+.++.+++. .-+|+.. -..++.+++.++++.++++|+|.|.+-.-..++.. .|+ .
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~--~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~a--dgp~i~~a~~~al~~G~~~~ 79 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYLM--VGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVA--DGPTIQVAHEVALKNGIRFE 79 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEEE--TTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTT--SCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCceEEEEec--CCCCChHHHHHHHHHHHHcCCCEEEECCCCCCccc--ccHHHHHHHHHHHHcCCCHH
Confidence 44555555432 2234433 23456788999999999999999988432222111 011 1
Q ss_pred -CHHHHHHHHhhC-CCcEEEccCCCC------HHHHHHHHHhcCcceeeee
Q 013813 274 -DWNAIKAVKNAL-RIPVLANGNVRH------MEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 274 -d~~~i~~ik~~~-~iPVianGGI~s------~eda~~~l~~tGaDgVmIG 316 (436)
-++.++++++.+ ++||++-|-.+. ...++.+.+ .|+|||.+.
T Consensus 80 ~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~-aG~dgvii~ 129 (262)
T 2ekc_A 80 DVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSRE-KGIDGFIVP 129 (262)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHH-TTCCEEECT
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHH-cCCCEEEEC
Confidence 135688888888 999998643321 233444444 599999985
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.24 Score=49.51 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=54.7
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHc--CccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDA--GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~a--G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~ 303 (436)
++.+.+ +...++ .+.++.+.+. |++.|.+|.... . ...-|+.++.+++.. ++||++ |+|.|.++++.
T Consensus 108 ~v~~~~--g~~~~~-~~~~~~l~~~~~g~~~i~i~~~~g-----~-~~~~~~~i~~lr~~~~~~~vi~-g~v~t~e~A~~ 177 (351)
T 2c6q_A 108 HLAASS--GTGSSD-FEQLEQILEAIPQVKYICLDVANG-----Y-SEHFVEFVKDVRKRFPQHTIMA-GNVVTGEMVEE 177 (351)
T ss_dssp TEEEEE--CSSHHH-HHHHHHHHHHCTTCCEEEEECSCT-----T-BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHH
T ss_pred eeEeec--CCChHH-HHHHHHHHhccCCCCEEEEEecCC-----C-cHHHHHHHHHHHHhcCCCeEEE-EeCCCHHHHHH
Confidence 344443 433333 3445555555 999998874321 1 122478899999988 899884 77899999999
Q ss_pred HHHhcCcceeeee
Q 013813 304 CLEETGCEGVLSA 316 (436)
Q Consensus 304 ~l~~tGaDgVmIG 316 (436)
+.+. |+|+|.++
T Consensus 178 a~~a-GaD~I~v~ 189 (351)
T 2c6q_A 178 LILS-GADIIKVG 189 (351)
T ss_dssp HHHT-TCSEEEEC
T ss_pred HHHh-CCCEEEEC
Confidence 9886 99999886
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.45 Score=46.88 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=60.5
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCccccc---ccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAF---LMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~---Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~ 243 (436)
+++...+-| +.+++|+|.||||.-+-.+ |+. .....+.+..+|+++++..++||+|-..- .+
T Consensus 31 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-------Ga~~v~~~eE~~Rv~pvI~~l~~~~~vpiSIDT~~-------~~ 96 (314)
T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGESTRP-------GSSYVEIEEEIQRVVPVIKAIRKESDVLISIDTWK-------SQ 96 (314)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC------------CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSC-------HH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHHhhCCceEEEeCCC-------HH
Confidence 344444444 5678899999999633111 221 12445677788888888789999998321 24
Q ss_pred HHHHHHHcCccEE-EeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc
Q 013813 244 YAKMLEDAGCSLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 292 (436)
Q Consensus 244 ~ak~le~aG~d~I-~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian 292 (436)
.++.+.++|++.| .|.|-..+ + +++ .+....++||++-
T Consensus 97 Va~aAl~aGa~iINDVsg~~~d-------~---~m~-~v~a~~~~~vvlm 135 (314)
T 2vef_A 97 VAEAALAAGADLVNDITGLMGD-------E---KMP-HVVAEARAQVVIM 135 (314)
T ss_dssp HHHHHHHTTCCEEEETTTTCSC-------T---THH-HHHHHHTCEEEEE
T ss_pred HHHHHHHcCCCEEEECCCCCCC-------h---HHH-HHHHHcCCCEEEE
Confidence 5677777899988 35543321 1 223 3334457888763
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=92.13 E-value=4.8 Score=38.63 Aligned_cols=143 Identities=8% Similarity=0.065 Sum_probs=84.8
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecC-CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-----
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF----- 235 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~G-CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg----- 235 (436)
++.+..+.+.+.+| ++.|++.|.+-.+ ++.-... ..+-...++.+.+.++++.+++. ++.|..-+...
T Consensus 75 v~~l~~n~~~i~~a---~~~G~~~V~i~~~~S~~h~~~--~~~~~~~e~~~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~ 148 (295)
T 1ydn_A 75 YSVLVPNMKGYEAA---AAAHADEIAVFISASEGFSKA--NINCTIAESIERLSPVIGAAIND-GLAIRGYVSCVVECPY 148 (295)
T ss_dssp EEEECSSHHHHHHH---HHTTCSEEEEEEESCHHHHHH--HTSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECSSEETT
T ss_pred EEEEeCCHHHHHHH---HHCCCCEEEEEEecCHHHHHH--HcCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEEEecCCc
Confidence 33444555554443 4568998888652 3222111 12223344556666777766544 66665433321
Q ss_pred ---CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEcc----CCCCHHHHHHHHHh
Q 013813 236 ---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANG----NVRHMEDVQKCLEE 307 (436)
Q Consensus 236 ---~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianG----GI~s~eda~~~l~~ 307 (436)
.+.+...++++.+.+.|++.|.+-.-... .......+.++.+++.++ +|+..-| |+. ...+..+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~----~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla-~an~l~Ai~a 223 (295)
T 1ydn_A 149 DGPVTPQAVASVTEQLFSLGCHEVSLGDTIGR----GTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRA-LDNIRVSLEK 223 (295)
T ss_dssp TEECCHHHHHHHHHHHHHHTCSEEEEEETTSC----CCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCH-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEecCCCCC----cCHHHHHHHHHHHHHhCCCCeEEEEECCCcchH-HHHHHHHHHh
Confidence 35678889999999999999988521110 111234677888988886 8887655 433 3445666775
Q ss_pred cCcceeeee
Q 013813 308 TGCEGVLSA 316 (436)
Q Consensus 308 tGaDgVmIG 316 (436)
|++.|-+.
T Consensus 224 -G~~~vd~s 231 (295)
T 1ydn_A 224 -GLRVFDAS 231 (295)
T ss_dssp -TCCEEEEB
T ss_pred -CCCEEEec
Confidence 99987765
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=92.09 E-value=0.37 Score=47.21 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=81.1
Q ss_pred EecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhh
Q 013813 163 QFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQD 240 (436)
Q Consensus 163 QL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d 240 (436)
.+.+.+++.+.+.++ .++.|+..+-+..|. ..+ .+.++++++.+ ++.+.+-..-+++.++
T Consensus 127 ~~~~~~~e~~~~~a~~~~~~G~~~~KiKvg~--------------~~d----~~~v~avr~~~~~~~l~vDaN~~~~~~~ 188 (324)
T 1jpd_X 127 TVVIGTPDQMANSASTLWQAGAKLLKVKLDN--------------HLI----SERMVAIRTAVPDATLIVDANESWRAEG 188 (324)
T ss_dssp EECSCCHHHHHHHHHHHHHTTCSEEEEECCS--------------SCH----HHHHHHHHHHCTTSEEEEECTTCCCSTT
T ss_pred EeeCCCHHHHHHHHHHHHHcCCCEEEEEeCC--------------chH----HHHHHHHHHhCCCCEEEEECcCCCCHHH
Confidence 355668888877664 567899999987651 112 33456666654 4566666666788889
Q ss_pred HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.++++.+++.++.+|- +... +-|++..++++ .++||.+.=.+.+..++.++++. +|.|.+
T Consensus 189 a~~~~~~l~~~~i~~iE-------qP~~---~~d~~~~~~l~--~~ipIa~dE~~~~~~~~~~~~~~--~~~i~i 249 (324)
T 1jpd_X 189 LAARCQLLADLGVAMLE-------QPLP---AQDDAALENFI--HPLPICADESCHTRSNLKALKGR--YEMVNI 249 (324)
T ss_dssp HHHHHHHHHHTTCCEEE-------CCSC---TTSCGGGGSSC--CSSCEEESTTCSSGGGHHHHBTT--BSEEEE
T ss_pred HHHHHHHHHhCCCCEEE-------CCCC---CCCHHHHHhcc--CCCCEEEcCCCCCHHHHHHHHhh--CCEEEE
Confidence 99999999999988762 1100 12333333332 57999998889999999988753 665554
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=92.07 E-value=0.6 Score=44.55 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=61.6
Q ss_pred HHHHHHHHhccc---CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCC-----------cc----C
Q 013813 213 VKSLVEKLALNL---NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-----------RA----D 274 (436)
Q Consensus 213 v~eIv~av~~~~---~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g-----------~a----d 274 (436)
+.+.++.+++.- -+|... -..++.++..++++.++++|+|.|.+-.-..++...++. .. -
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~--~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~ 81 (268)
T 1qop_A 4 YENLFAQLNDRREGAFVPFVT--LGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQC 81 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEE--TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhcCCceEEEEee--CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHH
Confidence 445555554322 233332 123556888999999999999999984322222111000 01 1
Q ss_pred HHHHHHHHhh-CCCcEEEccCCC-----C-HHHHHHHHHhcCcceeeeehHHh
Q 013813 275 WNAIKAVKNA-LRIPVLANGNVR-----H-MEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 275 ~~~i~~ik~~-~~iPVianGGI~-----s-~eda~~~l~~tGaDgVmIGRgal 320 (436)
.+.++++++. +++||++-+-.+ . .+.++.+.+ .|+|+|.+.-..+
T Consensus 82 ~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~-aGadgii~~d~~~ 133 (268)
T 1qop_A 82 FEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQ-VGVDSVLVADVPV 133 (268)
T ss_dssp HHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHH-HTCCEEEETTCCG
T ss_pred HHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHH-cCCCEEEEcCCCH
Confidence 3668899988 899998743221 1 344555555 5999999864433
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=92.05 E-value=3.9 Score=39.06 Aligned_cols=138 Identities=14% Similarity=0.239 Sum_probs=80.8
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc--cC--ccEEE
Q 013813 157 DRPLFVQFCAND-PEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LN--VPVSC 230 (436)
Q Consensus 157 e~plivQL~g~d-~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~--~~--iPVsV 230 (436)
+.++++=+=-.| |+..+.+++.+.. |+|.|.+|. +|+ .+.+...++.+.+. .+ .|..+
T Consensus 56 g~~VflDlK~~DIpnTv~~a~~~~~~~gad~vTVh~-----------~~G-----~~~~~aa~~~~~~~~~~g~~~~~li 119 (259)
T 3tfx_A 56 GYKIFLDLKMHDIPNTVYNGAKALAKLGITFTTVHA-----------LGG-----SQMIKSAKDGLIAGTPAGHSVPKLL 119 (259)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEG-----------GGC-----HHHHHHHHHHHHHHSCTTSCCCEEE
T ss_pred CCcEEEEecccccchHHHHHHHHHHhcCCCEEEEcC-----------CCC-----HHHHHHHHHHHHHhcccCCCCceEE
Confidence 567777776666 5566666666654 899999994 222 23344455544321 11 22222
Q ss_pred Ee-cc-CCC-------------h-hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEcc
Q 013813 231 KI-RV-FPN-------------L-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANG 293 (436)
Q Consensus 231 Ki-Rl-g~~-------------~-~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianG 293 (436)
-+ -+ ..+ . +....+|+...++|+++++..+ - + ++.+++.. +-.++..+
T Consensus 120 ~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a~~~G~dGvV~s~------------~--e-~~~ir~~~~~~f~~vtP 184 (259)
T 3tfx_A 120 AVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSGADGVICSP------------L--E-VKKLHENIGDDFLYVTP 184 (259)
T ss_dssp EECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHHHHTTCCEEECCG------------G--G-HHHHHHHHCSSSEEEEC
T ss_pred EEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCEEEECH------------H--H-HHHHHhhcCCccEEEcC
Confidence 11 11 111 1 2345678888899999987631 1 1 34555544 33466778
Q ss_pred CCCCHH----H------HHHHHHhcCcceeeeehHHhhCCccc
Q 013813 294 NVRHME----D------VQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 294 GI~s~e----d------a~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
||+-.. | ..++++. |+|.+++||+++..++-.
T Consensus 185 GIr~~g~~~gDQ~Rv~T~~~a~~a-Gad~iVvGr~I~~a~dp~ 226 (259)
T 3tfx_A 185 GIRPAGNAKDDQSRVATPKMAKEW-GSSAIVVGRPITLASDPK 226 (259)
T ss_dssp CCCCC-----------CHHHHHHT-TCSEEEECHHHHTSSSHH
T ss_pred CcCCCCCCcCCccccCCHHHHHHc-CCCEEEEChHHhCCCCHH
Confidence 886421 1 5566765 999999999998866543
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.79 Score=47.03 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHHhcc---c--CccEEEEec--------------cCCChhhHHHHHHH-HHHcCccEEEeccCcccccC
Q 013813 208 DNLPLVKSLVEKLALN---L--NVPVSCKIR--------------VFPNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKD 267 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~---~--~iPVsVKiR--------------lg~~~~d~~~~ak~-le~aG~d~I~VHgRt~~~~~ 267 (436)
.+.+.+.-++++|+++ + ++.+.+-.- -+++.++++++++. +++.++.+|- ++.
T Consensus 216 ~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IE------dPl- 288 (428)
T 3tqp_A 216 NNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIE------DGL- 288 (428)
T ss_dssp SHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEE------CCS-
T ss_pred cHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEe------CCC-
Confidence 3455566678899888 6 455555541 24677888999987 8888866551 111
Q ss_pred CCCCccCHHHHHHHHhhCCCcEEEccC---CCCHHHHHHHHHhcCcceeeee
Q 013813 268 GKKFRADWNAIKAVKNALRIPVLANGN---VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 268 ~~~g~ad~~~i~~ik~~~~iPVianGG---I~s~eda~~~l~~tGaDgVmIG 316 (436)
.+-||+..+++++.++.||-..|+ +.++++++++++...||.|.+=
T Consensus 289 ---~~dD~eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iK 337 (428)
T 3tqp_A 289 ---SENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVK 337 (428)
T ss_dssp ---CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred ---CcccHHHHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEec
Confidence 135899999999988766644454 4599999999998778888653
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=92.01 E-value=1.2 Score=43.46 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=44.4
Q ss_pred HHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccC---ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHH
Q 013813 169 PEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMD---NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 169 ~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~---~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ 244 (436)
++...+.| +.+++|+|.||||.-+--+ |+.-.. ..+.+..+++++++.+++||+|-.. + .+.
T Consensus 62 ~~~a~~~a~~~v~~GAdiIDIGgeStrP-------ga~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~---~----~~V 127 (297)
T 1tx2_A 62 VDAAVRHAKEMRDEGAHIIDIGGESTRP-------GFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTY---K----AEV 127 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCC-----------CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECS---C----HHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCC---C----HHH
Confidence 34444444 5668899999999644111 222222 2334555668888777999999842 1 234
Q ss_pred HHHHHHcCccEE
Q 013813 245 AKMLEDAGCSLL 256 (436)
Q Consensus 245 ak~le~aG~d~I 256 (436)
++.+.++|++.|
T Consensus 128 ~~aAl~aGa~iI 139 (297)
T 1tx2_A 128 AKQAIEAGAHII 139 (297)
T ss_dssp HHHHHHHTCCEE
T ss_pred HHHHHHcCCCEE
Confidence 555556688877
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=1.1 Score=43.48 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=59.7
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCcc---EEEeccCcccccC--CCCCc--cCHHHHHHHHhhCCCcEEE--ccC
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEKD--GKKFR--ADWNAIKAVKNALRIPVLA--NGN 294 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d---~I~VHgRt~~~~~--~~~g~--ad~~~i~~ik~~~~iPVia--nGG 294 (436)
.+.|+.+-+. +.+.++..+.++.++++|+| +|.+|.-...... .+.+. .-++.++.+++.+++||+. .++
T Consensus 92 ~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~ 170 (314)
T 2e6f_A 92 SKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY 170 (314)
T ss_dssp TTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC
T ss_pred CCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4789988875 56778888999999999999 8999753221100 01001 1246778888887889874 455
Q ss_pred CCCHHHH---HHHHHhcC-cceeeee
Q 013813 295 VRHMEDV---QKCLEETG-CEGVLSA 316 (436)
Q Consensus 295 I~s~eda---~~~l~~tG-aDgVmIG 316 (436)
+ +.+++ .+.+.+.| +|+|.+.
T Consensus 171 ~-~~~~~~~~a~~~~~aG~~d~i~v~ 195 (314)
T 2e6f_A 171 F-DIAHFDTAAAVLNEFPLVKFVTCV 195 (314)
T ss_dssp C-CHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred C-CHHHHHHHHHHHHhcCCceEEEEe
Confidence 4 55664 33345569 9998653
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=91.66 E-value=0.5 Score=45.92 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHcCccEEEeccCcc-ccc--CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTR-DEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~-~~~--~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..++++.++++|++.|.+..... ... .+.....+.+.++++++.+++||+++-.+...++++.+++ .|||+|. +
T Consensus 29 ~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~a-~GAd~V~-~ 106 (305)
T 2nv1_A 29 INAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEA-MGVDYID-E 106 (305)
T ss_dssp SSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHHHHHHHHH-HTCSEEE-E
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccchHHHHHHHH-CCCCEEE-E
Confidence 445789999999999995432100 000 1100123678899999999999996443434777777776 5999996 6
Q ss_pred hHHhh
Q 013813 317 ESLLE 321 (436)
Q Consensus 317 Rgal~ 321 (436)
...+.
T Consensus 107 ~~~l~ 111 (305)
T 2nv1_A 107 SEVLT 111 (305)
T ss_dssp CTTSC
T ss_pred eccCC
Confidence 66653
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=91.61 E-value=0.53 Score=48.72 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=85.7
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEE
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I 256 (436)
.+.||..+-+.+|.... .|. .+++.-.+.|+++++.+ ++.+.|-..-+++..+++++++.+++.++.+|
T Consensus 177 ~~~Gf~~~KlKv~~~~~------~G~---~~~~~di~rv~avRea~G~d~~L~vDaN~~wt~~~Ai~~~~~Le~~~l~~i 247 (455)
T 3fxg_A 177 KAMGFWGGKVPLPFCPD------DGH---EGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKACLDLNINWW 247 (455)
T ss_dssp HHHTCSCEEEECCCCGG------GHH---HHHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHTGGGCCSEE
T ss_pred HHcCCCEEEEcCCCCcc------ccc---ccHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHhcccCCccee
Confidence 34588888887642110 011 12445566777888877 57888888888999999999999999998776
Q ss_pred EeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 257 AVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 257 ~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++... +-|++..+++++.+ .+||.+.=.+.+..++.++++...+|.|++
T Consensus 248 -------EEPl~---~dd~~~la~L~~~~~~iPIA~gEs~~s~~d~~~li~~~avDiiq~ 297 (455)
T 3fxg_A 248 -------EECLS---PDDTDGFALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQP 297 (455)
T ss_dssp -------ECCSC---GGGGGGHHHHHHHCTTSEEEECTTCCHHHHHHHHHTTCCCSEECC
T ss_pred -------cCCCC---cchHHHHHHHHHhCCCCeEECCCccCCHHHHHHHHHcCCCCEEEE
Confidence 22111 34677788888876 478888778999999999998777888764
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.54 Score=45.67 Aligned_cols=94 Identities=10% Similarity=0.095 Sum_probs=59.8
Q ss_pred HHHHHHHhcccC-ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh-hCCCcEEE
Q 013813 214 KSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPVLA 291 (436)
Q Consensus 214 ~eIv~av~~~~~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~-~~~iPVia 291 (436)
.+.++.+++... .++.|-+. +. +-++.+.++|+|.|.+|.-+.++ --+.++.++. ..+++|.+
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~---t~----eea~eal~aGaD~I~LDn~~~~~--------~~~~v~~l~~~~~~v~iea 246 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVD---SL----EQLDAVLPEKPELILLDNFAVWQ--------TQTAVQRRDSRAPTVMLES 246 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEES---SH----HHHHHHGGGCCSEEEEETCCHHH--------HHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeC---CH----HHHHHHHHcCCCEEEECCCCHHH--------HHHHHHHhhccCCCeEEEE
Confidence 345555555442 25555543 22 33555667999999998743221 0133444444 23689999
Q ss_pred ccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 292 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 292 nGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+|||+ ++.+.++.+ +|+|++.+|.....-|+
T Consensus 247 SGGIt-~~~i~~~a~-tGVD~isvG~l~~~a~~ 277 (284)
T 1qpo_A 247 SGGLS-LQTAATYAE-TGVDYLAVGALTHSVRV 277 (284)
T ss_dssp ESSCC-TTTHHHHHH-TTCSEEECGGGTSSBCC
T ss_pred ECCCC-HHHHHHHHh-cCCCEEEECHHHcCCCC
Confidence 99995 788888776 59999999986555554
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.55 Score=49.20 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.+..+.++.+.++|++.|.|..-... . ..-++.++++++.. ++||+ .|+|.+.++++.+.+. |+|+|.+|-
T Consensus 255 ~d~~era~aLveaGvd~I~Id~a~g~----~--~~v~~~i~~i~~~~~~~~vi-~g~v~t~e~a~~~~~a-Gad~i~vg~ 326 (511)
T 3usb_A 255 ADAMTRIDALVKASVDAIVLDTAHGH----S--QGVIDKVKEVRAKYPSLNII-AGNVATAEATKALIEA-GANVVKVGI 326 (511)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCTT----S--HHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHH-TCSEEEECS
T ss_pred cchHHHHHHHHhhccceEEecccccc----h--hhhhhHHHHHHHhCCCceEE-eeeeccHHHHHHHHHh-CCCEEEECC
Confidence 34566788889999999999644211 1 22357889998876 47777 4789999999998886 999998853
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.30 E-value=1.4 Score=42.46 Aligned_cols=128 Identities=13% Similarity=-0.003 Sum_probs=82.5
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
|.+.+.+-++ .++. +|+|=++. ..|-+..-..+.-.++++.+.+ .+||.+.+- +.+..+++++++
T Consensus 17 D~~~l~~lv~~li~~-v~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~--rvpviaGvg-~~~t~~ai~la~ 82 (283)
T 2pcq_A 17 DEEAFRELAQALEPL-VDGLLVYG----------SNGEGVHLTPEERARGLRALRP--RKPFLVGLM-EETLPQAEGALL 82 (283)
T ss_dssp CHHHHHHHHHHHGGG-SSCCEETC----------TTTTGGGSCHHHHHHHHHTCCC--SSCCEEEEC-CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-CCEEEECC----------cCcCchhcCHHHHHHHHHHHHh--CCcEEEeCC-CCCHHHHHHHHH
Confidence 5666777675 4566 88887773 3454545566777788888776 789998843 245688999999
Q ss_pred HHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCccee
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgV 313 (436)
.++++|+|++.+..-........ ..-+++.+.|.+ ++||+ +| |---+++.+.++.+..++-||
T Consensus 83 ~A~~~Gadavlv~~P~y~~~~~~--~~l~~~f~~va~--~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgi 151 (283)
T 2pcq_A 83 EAKAAGAMALLATPPRYYHGSLG--AGLLRYYEALAE--KMPLFLYHVPQNTKVDLPLEAVEALAPHPNVLGI 151 (283)
T ss_dssp HHHHHTCSEEEECCCCTTGGGTT--THHHHHHHHHHH--HSCEEEEECHHHHCCCCCHHHHHHHTTSTTEEEE
T ss_pred HHHhcCCCEEEecCCcCCCCCCH--HHHHHHHHHHhc--CCCEEEEeCccccCcCCCHHHHHHHhcCCCEEEE
Confidence 99999999997753221100011 112456677777 78875 45 434578888777643334343
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=91.11 E-value=0.38 Score=44.79 Aligned_cols=137 Identities=9% Similarity=-0.010 Sum_probs=85.6
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 157 DRPLFVQFCAND-PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 157 e~plivQL~g~d-~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+.++++=+=-+| |+..+.+++.+...+|.|.+|..... ...++ .. +. +.-|++=..+.
T Consensus 50 g~~VflDlK~~DIpnTv~~a~~~~~~~ad~vTvh~~~G~---------~~~~~------~~-~~-----~~~v~vLts~s 108 (215)
T 3ve9_A 50 DGIKILDLKLADIDNTMILIVDELKDITNSFIAHAFVGV---------EGSLA------SL-SQ-----RVDLFLVLSMS 108 (215)
T ss_dssp CSEEEEEEEECSCHHHHHHHHHHHTTTCSEEEEEGGGCT---------TTTHH------HH-HH-----HSEEEEECCCS
T ss_pred CCcEEEEecccCchhHHHHHHHHHHHhhheEEEeCCCCc---------HHHHH------hH-hc-----CCCEEEEEecC
Confidence 677887776666 55566666666444999999952210 11111 11 11 11244443432
Q ss_pred C---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcc
Q 013813 236 P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCE 311 (436)
Q Consensus 236 ~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaD 311 (436)
. ..+-...+++...++|++++++.+. ..+.++.+++..+-.++..|||+.- .+..++++. |+|
T Consensus 109 ~~~~~~~~v~~~a~~a~~~G~~GvV~sat------------~~~e~~~ir~~~~~f~~v~pGI~~~g~~~~~a~~~-Gad 175 (215)
T 3ve9_A 109 HPGWNDAFYPYLREVARRVNPKGFVAPAT------------RPSMISRVKGDFPDKLVISPGVGTQGAKPGIALCH-GAD 175 (215)
T ss_dssp STTCCGGGHHHHHHHHHHHCCSEEECCTT------------SHHHHHHHHHHCTTSEEEECCTTSTTCCTTHHHHT-TCS
T ss_pred CcchHHHHHHHHHHHHHHcCCCceeeCCC------------CHHHHHHHHHhCCCcEEEcCCCCcCcCCHHHHHHc-CCC
Confidence 1 1234677899999999998876322 1345677887663367888999842 156667765 999
Q ss_pred eeeeehHHhhCCccch
Q 013813 312 GVLSAESLLENPALFA 327 (436)
Q Consensus 312 gVmIGRgal~nP~lf~ 327 (436)
.+.+||+++..++-..
T Consensus 176 ~iVvGr~I~~a~dp~~ 191 (215)
T 3ve9_A 176 YEIVGRSVYQSADPVR 191 (215)
T ss_dssp EEEECHHHHTSSSHHH
T ss_pred EEEeCHHHcCCCCHHH
Confidence 9999999998665443
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=91.09 E-value=1.5 Score=41.91 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=84.1
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-CC----
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-FP---- 236 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-g~---- 236 (436)
+-+|..+.++...| .+.|+|-|||+.+-.. | .|--....+ +.+++.+++||.|=||. +.
T Consensus 4 lEvc~~s~~~a~~A---~~~GAdRIELc~~L~~-----G----GlTPS~g~i----~~~~~~~~ipv~vMIRPR~GdF~Y 67 (256)
T 1twd_A 4 LEICCYSMECALTA---QQNGADRVELCAAPKE-----G----GLTPSLGVL----KSVRQRVTIPVHPIIRPRGGDFCY 67 (256)
T ss_dssp EEEEESSHHHHHHH---HHTTCSEEEECBCGGG-----T----CBCCCHHHH----HHHHHHCCSCEEEBCCSSSSCSCC
T ss_pred EEEEeCCHHHHHHH---HHcCCCEEEEcCCccc-----C----CCCCCHHHH----HHHHHHcCCceEEEECCCCCCCcC
Confidence 45666666654433 4568999999853211 1 132333444 34455668999999987 21
Q ss_pred ChhhH---HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccC---CCCHHHHHHHHHhcC
Q 013813 237 NLQDT---IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---VRHMEDVQKCLEETG 309 (436)
Q Consensus 237 ~~~d~---~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGG---I~s~eda~~~l~~tG 309 (436)
+..+. .+=++.+.++|+++|.+-.=+.+ |..|.+.++++.+.. +++|..-=- +.++..+.+.|...|
T Consensus 68 s~~E~~~M~~Di~~~~~~GadGvV~G~Lt~d------g~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG 141 (256)
T 1twd_A 68 SDGEFAAILEDVRTVRELGFPGLVTGVLDVD------GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELG 141 (256)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEECCBCTT------SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeECCC------CCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcC
Confidence 22222 33466788999999988655543 258889888887654 677765432 467777777666669
Q ss_pred cceeee
Q 013813 310 CEGVLS 315 (436)
Q Consensus 310 aDgVmI 315 (436)
++.|.-
T Consensus 142 ~~rILT 147 (256)
T 1twd_A 142 IARVLT 147 (256)
T ss_dssp CCEEEE
T ss_pred CCEEEC
Confidence 998873
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=91.04 E-value=0.97 Score=43.77 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=46.6
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
+++...+.| +.+++|+|.||||.-+-.+ |.-.-......+.+..+++++++. ++||+|-..- .+.++
T Consensus 27 ~~~~a~~~a~~~v~~GAdiIDIGgestrp----ga~~v~~~eE~~Rv~pvi~~l~~~-~~piSIDT~~-------~~va~ 94 (280)
T 1eye_A 27 DLDDAVKHGLAMAAAGAGIVDVGGESSRP----GATRVDPAVETSRVIPVVKELAAQ-GITVSIDTMR-------ADVAR 94 (280)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECC------------------HHHHHHHHHHHHHT-TCCEEEECSC-------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCC----CCCCCCHHHHHHHHHHHHHHhhcC-CCEEEEeCCC-------HHHHH
Confidence 566666555 5778999999999532111 100112234456677777777765 8999998321 23566
Q ss_pred HHHHcCccEE-Eecc
Q 013813 247 MLEDAGCSLL-AVHG 260 (436)
Q Consensus 247 ~le~aG~d~I-~VHg 260 (436)
.+.++|++.| .|.|
T Consensus 95 aAl~aGa~iINdvsg 109 (280)
T 1eye_A 95 AALQNGAQMVNDVSG 109 (280)
T ss_dssp HHHHTTCCEEEETTT
T ss_pred HHHHcCCCEEEECCC
Confidence 6667788877 3443
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=90.77 E-value=1.4 Score=43.97 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=60.5
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik 282 (436)
||.=++|..+++++- ..++||.+|.-.. +.++....++.+.+.|.+.+.+|+-+.-+. .....|+..|..++
T Consensus 118 ~S~~~~N~pLL~~va-----~~gKPviLstGms-tl~Ei~~Ave~i~~~g~~viLlhC~s~YPt--~~~~~nL~aI~~Lk 189 (350)
T 3g8r_A 118 ASCSFTDWPLLERIA-----RSDKPVVASTAGA-RREDIDKVVSFMLHRGKDLTIMHCVAEYPT--PDDHLHLARIKTLR 189 (350)
T ss_dssp CSSSTTCHHHHHHHH-----TSCSCEEEECTTC-CHHHHHHHHHHHHTTTCCEEEEECCCCSSC--CGGGCCTTHHHHHH
T ss_pred CcccccCHHHHHHHH-----hhCCcEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCC--CcccCCHHHHHHHH
Confidence 455578888777664 3689999996554 778888888888888988667786543221 12357899999999
Q ss_pred hhC-CCcEEEc
Q 013813 283 NAL-RIPVLAN 292 (436)
Q Consensus 283 ~~~-~iPVian 292 (436)
+.. ++||..+
T Consensus 190 ~~fp~lpVG~S 200 (350)
T 3g8r_A 190 QQYAGVRIGYS 200 (350)
T ss_dssp HHCTTSEEEEE
T ss_pred HHCCCCCEEcC
Confidence 988 8999776
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=90.76 E-value=3.9 Score=37.65 Aligned_cols=141 Identities=13% Similarity=0.067 Sum_probs=71.7
Q ss_pred EEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccE-EEEe--ccC
Q 013813 160 LFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPV-SCKI--RVF 235 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPV-sVKi--Rlg 235 (436)
+.++........+.++.+.+ +.|+|+|||....|...... ..+.+.+.++++. .++.+ ++-. ...
T Consensus 9 lg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~-------~~~~~~~~~~~~~----~gl~~~~~~~~~~~~ 77 (272)
T 2q02_A 9 FCINRKIAPGLSIEAFFRLVKRLEFNKVELRNDMPSGSVTD-------DLNYNQVRNLAEK----YGLEIVTINAVYPFN 77 (272)
T ss_dssp EEEEGGGCTTSCHHHHHHHHHHTTCCEEEEETTSTTSSTTT-------TCCHHHHHHHHHH----TTCEEEEEEEETTTT
T ss_pred hhhcccccCCCCHHHHHHHHHHcCCCEEEeecccccccccc-------ccCHHHHHHHHHH----cCCeEEechhhhccC
Confidence 55555443222344555444 45999999987555311100 1234444444433 35554 3322 121
Q ss_pred C-C---hhhHHHHHHHHHHcCccEEEeccCcccccCCCC-C-ccCHHHHHHHHhhCCCcEEEc------cCCCCHHHHHH
Q 013813 236 P-N---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-F-RADWNAIKAVKNALRIPVLAN------GNVRHMEDVQK 303 (436)
Q Consensus 236 ~-~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g-~ad~~~i~~ik~~~~iPVian------GGI~s~eda~~ 303 (436)
. + .+...+.++.+.+.|++.|.+|+..... .... . ...+..+..+.+..++.+..- .-+.+.+++.+
T Consensus 78 ~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~ 156 (272)
T 2q02_A 78 QLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGT-IVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQ 156 (272)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSB-CCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCch-hHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCHHHHHH
Confidence 1 1 1234566777889999999998654321 0000 0 001122223333446665442 24678999999
Q ss_pred HHHhcCccee
Q 013813 304 CLEETGCEGV 313 (436)
Q Consensus 304 ~l~~tGaDgV 313 (436)
+++..+ +.|
T Consensus 157 l~~~v~-~~~ 165 (272)
T 2q02_A 157 LIREAG-SPF 165 (272)
T ss_dssp HHHHHT-CCC
T ss_pred HHHHhC-cCe
Confidence 998766 544
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.75 E-value=1.8 Score=42.01 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCC-CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C------CC
Q 013813 167 NDPEILLNAARRVEPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F------PN 237 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~g~D~IdLN~GC-P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g------~~ 237 (436)
.+.+.+..|+ +.|++.|.+-.++ +..+ +.+.+-...+..+.+.++++.+++. ++.|.+-+-. + .+
T Consensus 84 ~~~~~i~~a~---~aG~~~v~i~~~~s~~~~--~~~~~~s~ee~l~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~ 157 (302)
T 2ftp_A 84 PNLKGFEAAL---ESGVKEVAVFAAASEAFS--QRNINCSIKDSLERFVPVLEAARQH-QVRVRGYISCVLGCPYDGDVD 157 (302)
T ss_dssp CSHHHHHHHH---HTTCCEEEEEEESCHHHH--HHHHSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTCBTTTBCCC
T ss_pred CCHHHHHHHH---hCCcCEEEEEEecCHHHH--HHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCCC
Confidence 5666555544 4689998885544 3211 1123334455566677777776643 5555433322 2 34
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEcc----CCCCHHHHHHHHHhcCcce
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANG----NVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianG----GI~s~eda~~~l~~tGaDg 312 (436)
.+...++++.+.+.|++.|.+-.-... .......+.++.+++.+ ++|+..-| |.. ...+..+++. |++.
T Consensus 158 ~~~~~~~~~~~~~~G~d~i~l~DT~G~----~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla-~An~laAv~a-Ga~~ 231 (302)
T 2ftp_A 158 PRQVAWVARELQQMGCYEVSLGDTIGV----GTAGATRRLIEAVASEVPRERLAGHFHDTYGQA-LANIYASLLE-GIAV 231 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESSSC----CCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCH-HHHHHHHHHT-TCCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCC----cCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHH-HHHHHHHHHh-CCCE
Confidence 577889999999999999988521111 11123467888888887 68987665 343 3456677775 9998
Q ss_pred eeeehH
Q 013813 313 VLSAES 318 (436)
Q Consensus 313 VmIGRg 318 (436)
|-..=+
T Consensus 232 vd~tv~ 237 (302)
T 2ftp_A 232 FDSSVA 237 (302)
T ss_dssp EEEBGG
T ss_pred EEeccc
Confidence 776544
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=90.72 E-value=0.43 Score=44.51 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=56.9
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-----------CccC----HHHHHHHHhhCCCcEEEccCCCC---
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-----------FRAD----WNAIKAVKNALRIPVLANGNVRH--- 297 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-----------g~ad----~~~i~~ik~~~~iPVianGGI~s--- 297 (436)
++.++..+.++.++++ +|.|.+---..++...+. ...+ .+.++++++.+++||.+-++++.
T Consensus 16 ~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~ 94 (248)
T 1geq_A 16 PDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYR 94 (248)
T ss_dssp SCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhh
Confidence 3447888999999999 999987511111110000 0112 67888999888999888766654
Q ss_pred ---HHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 298 ---MEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 298 ---~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
.+.++.+++. |+|+|.++--...++
T Consensus 95 ~~~~~~~~~~~~~-Gad~v~~~~~~~~~~ 122 (248)
T 1geq_A 95 AGVRNFLAEAKAS-GVDGILVVDLPVFHA 122 (248)
T ss_dssp HCHHHHHHHHHHH-TCCEEEETTCCGGGH
T ss_pred cCHHHHHHHHHHC-CCCEEEECCCChhhH
Confidence 4677777775 999999985444333
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.68 Score=45.17 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=56.8
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGa 310 (436)
.|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.++ .+..||
T Consensus 34 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Ga 112 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLAGTTGESPT-TTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGA 112 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTTTT-SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCC
Confidence 35566778899999999999999988876421 11111124455555543 5898744444444444433 334699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+-...+..|.
T Consensus 113 davlv~~P~y~~~~ 126 (304)
T 3cpr_A 113 DGLLVVTPYYSKPS 126 (304)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988876665
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=90.64 E-value=4.5 Score=37.85 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=89.5
Q ss_pred CCCEEEEe------cCCCHHHHHHHH---HHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCc
Q 013813 157 DRPLFVQF------CANDPEILLNAA---RRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 157 e~plivQL------~g~d~e~~~~AA---~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i 226 (436)
+.|+.|=| |..+.+++.... +.+ +.|+|+|-+-+--|.. .=|.+.+++++++.. ++
T Consensus 54 ~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg-----------~iD~~~~~~Li~~a~---~~ 119 (224)
T 2bdq_A 54 GISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNN-----------HIDTEAIEQLLPATQ---GL 119 (224)
T ss_dssp TCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS-----------SBCHHHHHHHHHHHT---TC
T ss_pred CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC-----------CcCHHHHHHHHHHhC---CC
Confidence 45666555 235566665544 333 4599999887654431 136788888887754 56
Q ss_pred cEEEEeccCCCh--hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHH
Q 013813 227 PVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 227 PVsVKiRlg~~~--~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~ 302 (436)
+++.= |..+.. .+..+-.+.+.+.|++.|--+|..... +..-..+.++++.+.. ++-|+..|||+. +.+.
T Consensus 120 ~vTFH-RAFD~~~~~d~~~ale~L~~lGv~rILTSG~~~~~----~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~-~Ni~ 193 (224)
T 2bdq_A 120 PLVFH-MAFDVIPKSDQKKSIDQLVALGFTRILLHGSSNGE----PIIENIKHIKALVEYANNRIEIMVGGGVTA-ENYQ 193 (224)
T ss_dssp CEEEC-GGGGGSCTTTHHHHHHHHHHTTCCEEEECSCSSCC----CGGGGHHHHHHHHHHHTTSSEEEECSSCCT-TTHH
T ss_pred eEEEE-CchhccCCcCHHHHHHHHHHcCCCEEECCCCCCCC----cHHHHHHHHHHHHHhhCCCeEEEeCCCCCH-HHHH
Confidence 76654 443333 555666788889999999777654321 0122356666665532 578888899974 7788
Q ss_pred HHHHhcCcceeee
Q 013813 303 KCLEETGCEGVLS 315 (436)
Q Consensus 303 ~~l~~tGaDgVmI 315 (436)
++++.+|++.+=.
T Consensus 194 ~l~~~tGv~e~H~ 206 (224)
T 2bdq_A 194 YICQETGVKQAHG 206 (224)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHhhCCCEEcc
Confidence 8887889988763
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.63 E-value=0.53 Score=46.38 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=45.7
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
+++...+-| +.+++|+|.||||.-+-.+....++-.-......+.+..+|+++++..++||+|-..- .+.++
T Consensus 47 ~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISIDT~~-------~~Va~ 119 (314)
T 3tr9_A 47 DLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTSR-------PRVMR 119 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEECSC-------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEeCCC-------HHHHH
Confidence 555555555 5678999999999532211000000000112234457778888888789999998432 12344
Q ss_pred HHHHcCccEE
Q 013813 247 MLEDAGCSLL 256 (436)
Q Consensus 247 ~le~aG~d~I 256 (436)
.+.++|++.|
T Consensus 120 aAl~aGa~iI 129 (314)
T 3tr9_A 120 EAVNTGADMI 129 (314)
T ss_dssp HHHHHTCCEE
T ss_pred HHHHcCCCEE
Confidence 4444566655
|
| >1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A | Back alignment and structure |
|---|
Probab=90.57 E-value=2.9 Score=42.51 Aligned_cols=90 Identities=9% Similarity=0.054 Sum_probs=52.6
Q ss_pred HhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-----CHHHHHHHHHHHc-CCCcEEEEecCCCchhh
Q 013813 124 RYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-----DPEILLNAARRVE-PYCDYVDINLGCPQRIA 197 (436)
Q Consensus 124 ~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-----d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~ 197 (436)
+-|+|++..|.+++-. ..+.....++ ..+.|+++++.-. +-..+.+++..++ .++++|-+||++
T Consensus 150 ~~GvDlll~ETi~~~~---Eakaa~~a~~--~~~lPv~iS~T~~~~G~l~G~~~~~~~~~l~~~~~~avGvNC~~----- 219 (406)
T 1lt8_A 150 KKNVDFLIAEYFEHVE---EAVWAVETLI--ASGKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHF----- 219 (406)
T ss_dssp HHTCSEEEECCCSCHH---HHHHHHHHHG--GGTSCEEEEECCBTTBCTTCCCHHHHHHHHHTTTCSEEEEESSS-----
T ss_pred hCCCCEEEEcccCCHH---HHHHHHHHHH--HhCCcEEEEEEECCCCCcCCCcHHHHHHHhhcCCCCEEEecCCC-----
Confidence 3489999999887521 0001111122 1247888887531 2223444444443 479999999853
Q ss_pred hcCcccccccCChHHHHHHHHHHhccc-----CccEEEEecc
Q 013813 198 RRGNYGAFLMDNLPLVKSLVEKLALNL-----NVPVSCKIRV 234 (436)
Q Consensus 198 ~~~~~Gs~Ll~~p~~v~eIv~av~~~~-----~iPVsVKiRl 234 (436)
.|+.+..+++.+++.. ++||+|.=..
T Consensus 220 -----------gP~~~~~~l~~l~~~~~~~g~~~pl~vyPNa 250 (406)
T 1lt8_A 220 -----------DPTISLKTVKLMKEGLEAAQLKAHLMSQPLA 250 (406)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTTTCCCEEEEECCS
T ss_pred -----------CHHHHHHHHHHHHHhhhhcCCCccEEEecCC
Confidence 2566677777776543 7899988443
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=10 Score=35.34 Aligned_cols=137 Identities=11% Similarity=0.076 Sum_probs=82.4
Q ss_pred CEEEEecC-CCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 159 PLFVQFCA-NDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 159 plivQL~g-~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
.+++-|.| .+.+++.+.++.+ +.|+|.||+=+.+ +.. .+.+.+.+.++.+++.. ++|+.+=+|.-
T Consensus 5 ~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~---------l~~---~~~~~v~~~~~~lr~~~~~~PiI~T~R~~ 72 (238)
T 1sfl_A 5 EVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQ---------FEN---VTVDQVAEMITKLKVMQDSFKLLVTYRTK 72 (238)
T ss_dssp EEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTT---------STT---CCHHHHHHHHHHHC---CCSEEEEECCBG
T ss_pred eEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecc---------ccc---CCHHHHHHHHHHHHHhccCCCEEEEeecc
Confidence 37799999 9998877766555 5589999998653 111 14678889999998877 78999988862
Q ss_pred -------CChhhHHHHHHHHHHc-CccEEEeccCcccccCCCCCccCHHHHHHHH---hhCCCcEEEcc----CCCCHHH
Q 013813 236 -------PNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVK---NALRIPVLANG----NVRHMED 300 (436)
Q Consensus 236 -------~~~~d~~~~ak~le~a-G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik---~~~~iPVianG----GI~s~ed 300 (436)
.+.++-.++.+.+.+. |+++|.|--.... +-+.++.+. ...+..||++= +--+.++
T Consensus 73 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~---------~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~e 143 (238)
T 1sfl_A 73 LQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADI---------DIEKHQRIITHLQQYNKEVIISHHNFESTPPLDE 143 (238)
T ss_dssp GGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECCTTS---------CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCC---------ChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHH
Confidence 1334556677777766 6999988543200 112233332 23356777663 2334455
Q ss_pred HHHHHH---hcCcceeeee
Q 013813 301 VQKCLE---ETGCEGVLSA 316 (436)
Q Consensus 301 a~~~l~---~tGaDgVmIG 316 (436)
+.+.++ ..|||.|=|+
T Consensus 144 l~~~~~~~~~~gaDivKia 162 (238)
T 1sfl_A 144 LQFIFFKMQKFNPEYVKLA 162 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 555443 3588877655
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=90.53 E-value=0.57 Score=45.71 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGa 310 (436)
.|.+...++++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.++. +..|+
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~-Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga 111 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGTTGESPT-TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGA 111 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhh-CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 35567778899999999999999988876421 11111124455555544 68988655544555555433 34599
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+....+..|.
T Consensus 112 davlv~~P~y~~~s 125 (304)
T 3l21_A 112 HGLLVVTPYYSKPP 125 (304)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988877764
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=90.49 E-value=1 Score=42.96 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=89.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.|++ =+...|.-. |+++ +.|||.|=+-- +.- . .-||-....-..+.+...++.|.+.+++||++-+-.
T Consensus 19 ~~~i~-~~~ayD~~s----A~~~~~aG~dai~vg~~s~a--~--~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~ 89 (255)
T 2qiw_A 19 GKLLV-LPTVWDTWS----AGLVEEAGFSGLTIGSHPVA--D--ATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVES 89 (255)
T ss_dssp CCCEE-CCEESSHHH----HHHHHHTTCSCEEECHHHHH--H--HTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTT
T ss_pred CCcEE-EecCcCHHH----HHHHHHcCCCEEEEChHHHH--H--hCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCC
Confidence 44543 355556432 3344 35888886651 111 1 122333344566778888888888889999999988
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-Ccc--CHHHHHHHHhh---CCCcEEEccCCCC-----------
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRA--DWNAIKAVKNA---LRIPVLANGNVRH----------- 297 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~a--d~~~i~~ik~~---~~iPVianGGI~s----------- 297 (436)
|..... .+.++.+.++|+++|.+-+..... +.. .+. -.+.|+.+++. .++|++.+|-...
T Consensus 90 Gyg~~~-~~~~~~l~~aGa~gv~iEd~~~~~--~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~ 166 (255)
T 2qiw_A 90 GYGLSP-ADLIAQILEAGAVGINVEDVVHSE--GKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDP 166 (255)
T ss_dssp CTTCCH-HHHHHHHHHTTCCEEEECSEEGGG--TTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSH
T ss_pred CcCcHH-HHHHHHHHHcCCcEEEECCCCCCC--CCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHH
Confidence 753222 777888889999999997654211 100 011 12334444443 2688666665443
Q ss_pred HHHH----HHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 298 MEDV----QKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 298 ~eda----~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.+++ +.+.+ .|||+|++= + +.++...+++.
T Consensus 167 ~~~ai~ra~a~~e-AGAd~i~~e-~-~~~~~~~~~i~ 200 (255)
T 2qiw_A 167 MVEAIKRIKLMEQ-AGARSVYPV-G-LSTAEQVERLV 200 (255)
T ss_dssp HHHHHHHHHHHHH-HTCSEEEEC-C-CCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCcEEEEc-C-CCCHHHHHHHH
Confidence 2333 23333 499999882 2 33334444443
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=90.46 E-value=0.57 Score=45.42 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGaD 311 (436)
|.+....+++.+.+.|+++|.+-|-|.+... .+..-..+.++.+.+.+ ++|||+.-|-.+.+++.++. +..|||
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~-Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 99 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTTAESPT-LTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGAD 99 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccccc-CCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCC
Confidence 5566778889999999999999888776421 11111124455555543 68988655555556655443 345999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+....+..|.
T Consensus 100 avlv~~P~y~~~~ 112 (292)
T 3daq_A 100 AIMLITPYYNKTN 112 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988776664
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=90.38 E-value=1.1 Score=44.31 Aligned_cols=95 Identities=15% Similarity=0.312 Sum_probs=60.1
Q ss_pred ccccCChHH-----HHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHH
Q 013813 204 AFLMDNLPL-----VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277 (436)
Q Consensus 204 s~Ll~~p~~-----v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~ 277 (436)
+.|.++... +.+.++++++.. ..++.|=+. +.++ ++.+.++|+|.|-+..- +.+.
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVd---tlde----a~eAl~aGaD~I~LDn~------------~~~~ 264 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETE---TLAE----LEEAISAGADIIMLDNF------------SLEM 264 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEES---SHHH----HHHHHHTTCSEEEEESC------------CHHH
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEEC---CHHH----HHHHHHcCCCEEEECCC------------CHHH
Confidence 445555442 234555555544 345555432 2333 34455689999988542 2355
Q ss_pred HHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 278 IKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 278 i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++++++.+ +++|.++|||+ .+.+.++.+ +|+|++.+|.--
T Consensus 265 l~~av~~l~~~v~ieaSGGIt-~~~I~~~a~-tGVD~isvGalt 306 (320)
T 3paj_A 265 MREAVKINAGRAALENSGNIT-LDNLKECAE-TGVDYISVGALT 306 (320)
T ss_dssp HHHHHHHHTTSSEEEEESSCC-HHHHHHHHT-TTCSEEECTHHH
T ss_pred HHHHHHHhCCCCeEEEECCCC-HHHHHHHHH-cCCCEEEECcee
Confidence 66666554 78999999996 788888765 699999999643
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=90.33 E-value=0.63 Score=45.21 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=57.1
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGaD 311 (436)
|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.++ .+..|+|
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 104 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGTTGESAT-LSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGAD 104 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCccc-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 5566778888999999999999988876421 11111123445555543 5898865444455555443 3446999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+....+..|.
T Consensus 105 avlv~~P~y~~~~ 117 (297)
T 3flu_A 105 YTLSVVPYYNKPS 117 (297)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988877665
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=90.22 E-value=0.64 Score=45.29 Aligned_cols=86 Identities=21% Similarity=0.344 Sum_probs=55.9
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEE-ccCCCCHHHHHHH---HHhcCc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA-NGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVia-nGGI~s~eda~~~---l~~tGa 310 (436)
|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+ .|+..+ +++.+. .+..||
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~-Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t-~~ai~la~~A~~~Ga 108 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGTTGESPT-LTSEEKVALYRHVVSVVDKRVPVIAGTGSNNT-HASIDLTKKATEVGV 108 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSCH-HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCceEEeCCCCCCH-HHHHHHHHHHHhcCC
Confidence 4556678889999999999999888876421 11111124445555543 589874 455444 444433 344699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+-...+..|.
T Consensus 109 davlv~~P~y~~~s 122 (301)
T 1xky_A 109 DAVMLVAPYYNKPS 122 (301)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEEcCCCCCCCC
Confidence 99999988877665
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=90.19 E-value=2.7 Score=41.41 Aligned_cols=163 Identities=10% Similarity=-0.004 Sum_probs=91.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
.|+ +=+...|.-. |+++ +.|||.|=+--. ...++.- |+-....-..+.+...++.|.+.+ ++||++.+-.|
T Consensus 39 ~~i-~~~~ayD~~s----A~i~e~aGfdai~vs~~-~~a~~~l-G~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~G 111 (318)
T 1zlp_A 39 GSV-LMPGVQDALS----AAVVEKTGFHAAFVSGY-SVSAAML-GLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTG 111 (318)
T ss_dssp SSE-EEEEECSHHH----HHHHHHTTCSEEEECHH-HHHHHHH-CCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTC
T ss_pred CcE-EEecCCCHHH----HHHHHHcCCCEEEECcH-HHhhHhc-CCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCC
Confidence 444 3466667543 3344 358999876521 1111111 122223445677788888888888 99999999887
Q ss_pred C-ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCC---ccC-HHHHHH---HHhhC-CCcEEEccCCCCH--------
Q 013813 236 P-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF---RAD-WNAIKA---VKNAL-RIPVLANGNVRHM-------- 298 (436)
Q Consensus 236 ~-~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g---~ad-~~~i~~---ik~~~-~iPVianGGI~s~-------- 298 (436)
. +..++.+.++.+.++|+++|.+-+.....+.+..+ -.. -+.+.+ +++.. .-+++.+|.....
T Consensus 112 yg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~a 191 (318)
T 1zlp_A 112 GGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEG 191 (318)
T ss_dssp SSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHH
Confidence 4 45677888999999999999997665322211110 111 133334 33332 3345555544432
Q ss_pred -HHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 299 -EDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 299 -eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
++++.+.+ .|||+|++= + +.++..++++.
T Consensus 192 i~Ra~Ay~e-AGAd~i~~e-~-~~~~e~~~~i~ 221 (318)
T 1zlp_A 192 IRRANLYKE-AGADATFVE-A-PANVDELKEVS 221 (318)
T ss_dssp HHHHHHHHH-TTCSEEEEC-C-CCSHHHHHHHH
T ss_pred HHHHHHHHH-cCCCEEEEc-C-CCCHHHHHHHH
Confidence 23333334 599999873 2 24444555443
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=90.19 E-value=0.62 Score=45.08 Aligned_cols=87 Identities=15% Similarity=0.276 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGaD 311 (436)
|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.++ .+..|+|
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVGTTGEAST-LSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGAD 98 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcccccccc-CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 5566778889999999999999888876421 11111124445555543 5898865454455555543 3346999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+....+..|.
T Consensus 99 avlv~~P~y~~~~ 111 (291)
T 3tak_A 99 AALLVTPYYNKPT 111 (291)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999988877775
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=90.18 E-value=1.4 Score=44.62 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=72.2
Q ss_pred HHHHHHHHhcccC--ccEEEEeccC------CChhhHHHHHHHHHHc--Ccc-EEEeccCcccccCCCC-CccCHHHHHH
Q 013813 213 VKSLVEKLALNLN--VPVSCKIRVF------PNLQDTIKYAKMLEDA--GCS-LLAVHGRTRDEKDGKK-FRADWNAIKA 280 (436)
Q Consensus 213 v~eIv~av~~~~~--iPVsVKiRlg------~~~~d~~~~ak~le~a--G~d-~I~VHgRt~~~~~~~~-g~ad~~~i~~ 280 (436)
..+.+++|++.++ +.+.+-..-+ ++.++++++++.+++. ++. +| ++..... .+-||+..++
T Consensus 218 d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~~~~a~~~~~~L~~~~~~i~~~i-------EqP~~~~~~~~d~~~~~~ 290 (413)
T 1kcz_A 218 LRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRI-------EGPMDVEDRQKQMEAMRD 290 (413)
T ss_dssp HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEEE-------ECSBCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEecCCCcccccCCCHHHHHHHHHHHHhhcCCcceEE-------ecCCCCCCCcccHHHHHH
Confidence 4577888888774 5566665556 7888999999999987 555 33 2110000 1237888899
Q ss_pred HHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 281 VKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 281 ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+++. .++||.+.=.+.+.+++.++++...+|.|.+=
T Consensus 291 l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik 331 (413)
T 1kcz_A 291 LRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIK 331 (413)
T ss_dssp HHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEEC
T ss_pred HHHhhhcCCCCCcEEeCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 9988 78999998889999999999998788988764
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=90.18 E-value=0.91 Score=42.86 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=58.5
Q ss_pred HHHHHHHHhcccCccEEEEeccC-CChhhHHHHHHHHHHcCccEEEeccCccccc---------------CCCCCccCHH
Q 013813 213 VKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWN 276 (436)
Q Consensus 213 v~eIv~av~~~~~iPVsVKiRlg-~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~---------------~~~~g~ad~~ 276 (436)
+.+.++.+++.-...+..=+=.| ++.++..+.++.++++|+|.|.+-.-..++. .+.....-++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~ 84 (262)
T 1rd5_A 5 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLE 84 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHH
Confidence 34455555433222333222233 4557888999999999999998842222111 0000011246
Q ss_pred HHHHHHhhCCCcEEEccCCCCHH---HHHHHHHhcCcceeeee
Q 013813 277 AIKAVKNALRIPVLANGNVRHME---DVQKCLEETGCEGVLSA 316 (436)
Q Consensus 277 ~i~~ik~~~~iPVianGGI~s~e---da~~~l~~tGaDgVmIG 316 (436)
.++++++.+++||++++... +. .++.+.+ .|+|+|.+.
T Consensus 85 ~i~~ir~~~~~Pv~~m~~~~-~~~~~~~~~a~~-aGadgv~v~ 125 (262)
T 1rd5_A 85 MLREVTPELSCPVVLLSYYK-PIMFRSLAKMKE-AGVHGLIVP 125 (262)
T ss_dssp HHHHHGGGCSSCEEEECCSH-HHHSCCTHHHHH-TTCCEEECT
T ss_pred HHHHHHhcCCCCEEEEecCc-HHHHHHHHHHHH-cCCCEEEEc
Confidence 68888888899999875222 21 1233555 599999985
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=90.17 E-value=6.5 Score=37.35 Aligned_cols=130 Identities=17% Similarity=0.192 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC---ChhhHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP---NLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~---~~~d~~ 242 (436)
|-.+..+....+.+.++.|++-+- +|++.+-..+.+++.++-.+++ +++|+..=-+.. .-....
T Consensus 22 glg~~~~~d~Le~~g~yID~lKfg------------~Gt~~l~~~~~l~eki~l~~~~-gV~v~~GGTl~E~~~~qg~~~ 88 (251)
T 1qwg_A 22 GLPPKFVEDYLKVCGDYIDFVKFG------------WGTSAVIDRDVVKEKINYYKDW-GIKVYPGGTLFEYAYSKGKFD 88 (251)
T ss_dssp SCCHHHHHHHHHHHGGGCSEEEEC------------TTGGGGSCHHHHHHHHHHHHTT-TCEEEECHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHhhhhcceEEec------------CceeeecCHHHHHHHHHHHHHc-CCeEECCcHHHHHHHHcCcHH
Confidence 456677777777777788998876 5777777888999999887654 666665411000 012445
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhhCCCcEEEccCCCCH--------H----HHHHHHHhcC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLANGNVRHM--------E----DVQKCLEETG 309 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~~~iPVianGGI~s~--------e----da~~~l~~tG 309 (436)
++.+.+.+.|.+.|-|...+.+-. .-+| ++|+++++. +..|+..=|..++ + .+++.|+. |
T Consensus 89 ~yl~~~k~lGf~~iEiS~G~i~l~-----~~~~~~~I~~~~~~-G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA-G 161 (251)
T 1qwg_A 89 EFLNECEKLGFEAVEISDGSSDIS-----LEERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA-G 161 (251)
T ss_dssp HHHHHHHHHTCCEEEECCSSSCCC-----HHHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCEEEECCCcccCC-----HHHHHHHHHHHHHC-CCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC-C
Confidence 678888999999999988776421 1223 466666654 4455554344444 3 34556676 9
Q ss_pred cceeee
Q 013813 310 CEGVLS 315 (436)
Q Consensus 310 aDgVmI 315 (436)
|+.|||
T Consensus 162 A~~Vii 167 (251)
T 1qwg_A 162 ADYVII 167 (251)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 999998
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=90.15 E-value=0.75 Score=44.75 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=56.5
Q ss_pred HHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEE
Q 013813 214 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 290 (436)
Q Consensus 214 ~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVi 290 (436)
.+.++.+++.. .+++.|-+. +.+ -++.+.++|+|.|-+..-+ .+.++++.+.+ ++++.
T Consensus 186 ~~Av~~ar~~~~~~~IeVEv~---tl~----ea~eAl~aGaD~I~LDn~~------------~~~l~~av~~~~~~v~ie 246 (287)
T 3tqv_A 186 AKAVTKAKKLDSNKVVEVEVT---NLD----ELNQAIAAKADIVMLDNFS------------GEDIDIAVSIARGKVALE 246 (287)
T ss_dssp HHHHHHHHHHCTTSCEEEEES---SHH----HHHHHHHTTCSEEEEESCC------------HHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHhhCCCCcEEEEeC---CHH----HHHHHHHcCCCEEEEcCCC------------HHHHHHHHHhhcCCceEE
Confidence 34455555432 456666432 223 3444567899999886422 24455555543 78999
Q ss_pred EccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 291 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 291 anGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++|||+ .+.+.++.+ +|+|.+.+|.-.-.-|+
T Consensus 247 aSGGIt-~~~i~~~a~-tGVD~IsvGalt~sa~~ 278 (287)
T 3tqv_A 247 VSGNID-RNSIVAIAK-TGVDFISVGAITKHIKA 278 (287)
T ss_dssp EESSCC-TTTHHHHHT-TTCSEEECSHHHHSBCC
T ss_pred EECCCC-HHHHHHHHH-cCCCEEEEChhhcCCcc
Confidence 999995 688888665 69999999854433333
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=90.09 E-value=0.57 Score=45.98 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGaD 311 (436)
|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. +..|+|
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gad 120 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVGTTGESAT-LDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGAD 120 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSGGGTGGG-CCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 5566778888999999999999888876421 11111123444455543 58988655544555555433 346999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+....+..|.
T Consensus 121 avlv~~P~y~~~s 133 (314)
T 3qze_A 121 ACLLVTPYYNKPT 133 (314)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999988877775
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.35 Score=47.44 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
..+++++++.++.. .|+..+-+..|.+ +++.-.+.++++++.+ ++.+.|-..-+++.+++.++
T Consensus 113 ~~~~~~~~~~a~~~-~G~~~~KiKvG~~---------------~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~ 176 (322)
T 1r6w_A 113 NGDPDDLILKLADM-PGEKVAKVRVGLY---------------EAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQF 176 (322)
T ss_dssp CSCHHHHHHHHHTC-CSSEEEEEECSSS---------------CHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHH
T ss_pred CCCHHHHHHHHHHh-CCCceEEEEeCCC---------------CHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHH
Confidence 56888877666543 6888888876531 3555567778887766 34455554457888889999
Q ss_pred HHHHHHc---CccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDA---GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~a---G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++. ++.+| ++. . .+++..+++++.+++||.+.=.+.+.+ . +.++..++|.|++
T Consensus 177 ~~~l~~~~~~~i~~i-------EqP--~---~~~~~~~~l~~~~~ipIa~dE~~~~~~-~-~~~~~~a~d~i~i 236 (322)
T 1r6w_A 177 AKYVNPDYRDRIAFL-------EEP--C---KTRDDSRAFARETGIAIAWDESLREPD-F-AFVAEEGVRAVVI 236 (322)
T ss_dssp HHTSCTTTGGGEEEE-------ECC--B---SSHHHHHHHHHHHCCCEEESGGGGSTT-C-CCCCCTTEEEEEE
T ss_pred HHHhhhhccCCeeEE-------ECC--C---CChHHHHHHHHhCCCCEEeCCCCCChh-H-hhhhcCCCCEEEE
Confidence 9988887 66655 211 1 246778888888899999988887743 3 4444446676654
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=90.03 E-value=1.8 Score=46.01 Aligned_cols=63 Identities=30% Similarity=0.401 Sum_probs=44.0
Q ss_pred HHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHc--C
Q 013813 175 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA--G 252 (436)
Q Consensus 175 AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~a--G 252 (436)
|.+.+++|+|.||||.| +......+.+.+++..+++.+++||+|-.. + .+.++...++ |
T Consensus 346 A~~~v~~GAdiIDIgpg------------~~~v~~~ee~~rvv~~i~~~~~vpisIDT~---~----~~v~eaal~~~~G 406 (566)
T 1q7z_A 346 AKTQVEKGAEVLDVNFG------------IESQIDVRYVEKIVQTLPYVSNVPLSLDIQ---N----VDLTERALRAYPG 406 (566)
T ss_dssp HHHHHHTTCSEEEEECS------------SGGGSCHHHHHHHHHHHHHHTCSCEEEECC---C----HHHHHHHHHHCSS
T ss_pred HHHHHHCCCCEEEECCC------------CCCCCHHHHHHHHHHHHHhhCCceEEEeCC---C----HHHHHHHHHhcCC
Confidence 33567889999999943 333466788899999888778999999832 1 1234444455 8
Q ss_pred ccEE
Q 013813 253 CSLL 256 (436)
Q Consensus 253 ~d~I 256 (436)
++.|
T Consensus 407 ~~iI 410 (566)
T 1q7z_A 407 RSLF 410 (566)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 7765
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=2.6 Score=42.20 Aligned_cols=130 Identities=12% Similarity=0.008 Sum_probs=0.0
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-+ ..++.|+|+|=++ |.-|-+..-..+.=.++++.+.+.+ .+||.+.+ .+.+..+++++
T Consensus 78 D~~al~~lv~~li~~Gv~Gl~v~----------GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGv-g~~st~eai~l 146 (360)
T 4dpp_A 78 DLEAYDDLVNIQIQNGAEGVIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNT-GSNSTREAIHA 146 (360)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEES----------STTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-CCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEec----------ccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEec-CCCCHHHHHHH
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc------cCCCCHHHHHHHHHhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN------GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian------GGI~s~eda~~~l~~tGaDgV 313 (436)
++.++++|+|++.+..-....... ..-+++.+.|.+. +||+.- |---+++.+.++.+..++-||
T Consensus 147 a~~A~~~Gadavlvv~PyY~k~sq---~gl~~hf~~IA~a--~PiilYNiP~rTg~~ls~e~l~~La~~pnIvGI 216 (360)
T 4dpp_A 147 TEQGFAVGMHAALHINPYYGKTSI---EGLIAHFQSVLHM--GPTIIYNVPGRTGQDIPPRAIFKLSQNPNLAGV 216 (360)
T ss_dssp HHHHHHTTCSEEEEECCCSSCCCH---HHHHHHHHTTGGG--SCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEE
T ss_pred HHHHHHcCCCEEEEcCCCCCCCCH---HHHHHHHHHHHHh--CCEEEEeCCcccCCCCCHHHHHHHhcCCCEEEE
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=89.98 E-value=0.66 Score=44.93 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHH---hcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLE---ETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~---~tGaD 311 (436)
|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.+..+ ..|+|
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGTTGESAT-LNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCC
Confidence 5566778889899999999999988876421 11111124445555543 589875444444455554433 35999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+-...+..|.
T Consensus 99 avlv~~P~y~~~s 111 (292)
T 2ojp_A 99 GCLTVTPYYNRPS 111 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988877664
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=2.6 Score=38.30 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc--cCccEEEEeccCCChhhHHHHH
Q 013813 168 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LNVPVSCKIRVFPNLQDTIKYA 245 (436)
Q Consensus 168 d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~--~~iPVsVKiRlg~~~~d~~~~a 245 (436)
+.++..+.++.+......++++.|.=. .+| ++ +++++++. ..+++.+| +.+-......++
T Consensus 10 ~l~~~~~~~~~~~~~~~~~kv~~~~f~------~~G------~~----~i~~lr~~~~~~v~~D~k--l~DI~~t~~~~v 71 (208)
T 2czd_A 10 EGERAIKIAKSVKDYISMIKVNWPLIL------GSG------VD----IIRRLKEETGVEIIADLK--LADIPNTNRLIA 71 (208)
T ss_dssp SHHHHHHHHHHHGGGCSEEEEEHHHHH------HHC------TT----HHHHHHHHHCCEEEEEEE--ECSCHHHHHHHH
T ss_pred CHHHHHHHHHHhcccccEEEecHHHHH------hhC------HH----HHHHHHHcCCCEEEEEee--eCchHHHHHHHH
Confidence 333333333333344678888854210 123 22 33445544 45677777 543334556778
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCC----------HHHHHHHHHhcCcceeee
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH----------MEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s----------~eda~~~l~~tGaDgVmI 315 (436)
+.+.++|+|.|+||+-... +.++.+++..++.+ +-+... .+.+..+-.+.|++|+.+
T Consensus 72 ~~~~~~Gad~vtvh~~~g~-----------~~i~~~~~~~gv~v--l~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~ 138 (208)
T 2czd_A 72 RKVFGAGADYVIVHTFVGR-----------DSVMAVKELGEIIM--VVEMSHPGALEFINPLTDRFIEVANEIEPFGVIA 138 (208)
T ss_dssp HHHHHTTCSEEEEESTTCH-----------HHHHHHHTTSEEEE--ECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEEC
T ss_pred HHHHhcCCCEEEEeccCCH-----------HHHHHHHHhCCcEE--EEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEE
Confidence 8889999999999975421 33666666543333 333221 122233334459999876
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
+
T Consensus 139 ~ 139 (208)
T 2czd_A 139 P 139 (208)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=89.88 E-value=0.69 Score=45.09 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=56.0
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEE-ccCCCCHHHHHHH---HHhcCc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA-NGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVia-nGGI~s~eda~~~---l~~tGa 310 (436)
|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+ .|+..+ +++.++ .+..|+
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t-~~ai~la~~A~~~Ga 107 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGSTGEAFV-QSLSEREQVLEIVAEEAKGKIKLIAHVGCVST-AESQQLAASAKRYGF 107 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTTSEEEEECCCSSH-HHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCH-HHHHHHHHHHHhCCC
Confidence 5556678889999999999999888876421 11111124445555543 689874 555444 444433 344699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+-...+..|.
T Consensus 108 davlv~~P~y~~~s 121 (303)
T 2wkj_A 108 DAVSAVTPFYYPFS 121 (303)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEecCCCCCCCC
Confidence 99999988877665
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=89.85 E-value=1.6 Score=42.77 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=64.4
Q ss_pred HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE-EeccCCChhhHHHHHHHHHHcCcc-
Q 013813 177 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-KIRVFPNLQDTIKYAKMLEDAGCS- 254 (436)
Q Consensus 177 ~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV-KiRlg~~~~d~~~~ak~le~aG~d- 254 (436)
+.++.|+|.||||+.+--+ | +.--.++...++|+.+++.+++|++| - .| +.+.-.+.++.+.++|++
T Consensus 82 ~~v~~GAdiIDIg~~StrP-------~-~~~vs~eee~~vV~~v~~~~~vplsI~D--T~-~~~~~~~V~eaal~aga~~ 150 (310)
T 2h9a_B 82 KCVEYGADIVALRLVSAHP-------D-GQNRSGAELAEVCKAVADAIDVPLMIIG--CG-VEEKDAEIFPVIGEALSGR 150 (310)
T ss_dssp HHHHTTCSEEEEECGGGCT-------T-TTCCCHHHHHHHHHHHHHHCSSCEEEEC--CS-CHHHHHHHHHHHHHHTTTS
T ss_pred HHHHcCCcEEEEeCccCCC-------C-CCCCCHHHHHHHHHHHHHhCCceEEEEC--CC-CCCCCHHHHHHHHHhCCCC
Confidence 5677899999999853111 1 12245677777999998888999999 5 21 122234567777788886
Q ss_pred --EE-EeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH
Q 013813 255 --LL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 255 --~I-~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l 305 (436)
.| .+.+- +++.+..+....+.||++-.- .+.+.+++.+
T Consensus 151 k~iINdvs~~------------~~~~~~~~aa~~g~~vv~m~~-~dv~~l~~~~ 191 (310)
T 2h9a_B 151 NCLLSSATKD------------NYKPIVATCMVHGHSVVASAP-LDINLSKQLN 191 (310)
T ss_dssp CCEEEEECTT------------THHHHHHHHHHHTCEEEEECS-SCHHHHHHHH
T ss_pred CCEEEECCCC------------ccHHHHHHHHHhCCCEEEECh-hHHHHHHHHH
Confidence 33 23221 244555566667889887652 1334444433
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=89.75 E-value=1.4 Score=45.12 Aligned_cols=71 Identities=15% Similarity=0.316 Sum_probs=55.3
Q ss_pred CChhhHHHHHHHHHH-cCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccC-CCCHHHHHHHHHhcCcc
Q 013813 236 PNLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGN-VRHMEDVQKCLEETGCE 311 (436)
Q Consensus 236 ~~~~d~~~~ak~le~-aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGG-I~s~eda~~~l~~tGaD 311 (436)
++.++++++++.+.+ .++.+| ++.. .+-||+..+++++.+ ++||.+.-- +.+.+++.++++...+|
T Consensus 279 ~t~~eai~~~~~l~~~~~i~~i-------EePl---~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d 348 (444)
T 1w6t_A 279 RTSAEQIDYLEELVNKYPIITI-------EDGM---DENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAAN 348 (444)
T ss_dssp ECHHHHHHHHHHHHHHSCEEEE-------ESCS---CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-------ECCC---ChhhHHHHHHHHHhhCCCCeEEeCCcccCCHHHHHHHHHcCCCC
Confidence 567888899988864 776554 2111 135899999999988 899988877 99999999999987889
Q ss_pred eeeee
Q 013813 312 GVLSA 316 (436)
Q Consensus 312 gVmIG 316 (436)
.|++=
T Consensus 349 ~i~ik 353 (444)
T 1w6t_A 349 SILIK 353 (444)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88763
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=89.66 E-value=0.69 Score=44.81 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHH-cCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCc
Q 013813 237 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~-aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGa 310 (436)
|.+....+++.+.+ .|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. +..|+
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga 100 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFM-LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccccchhh-CCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 55566788888999 99999999888776421 11111124455555543 58987544444445454433 34699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+-...+..|.
T Consensus 101 davlv~~P~y~~~~ 114 (293)
T 1f6k_A 101 DCLSAVTPFYYKFS 114 (293)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988877665
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=89.65 E-value=2.4 Score=41.21 Aligned_cols=97 Identities=14% Similarity=0.045 Sum_probs=60.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.|+ +=+...|+-. |++++ .|||.|=+- .++-. . -|+-....-..+.+...++.|.+.+++||++-+-.
T Consensus 18 ~~~i-~~~~a~D~~s----A~~~~~aG~~ai~vsg~~~a~--~--lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~ 88 (295)
T 1s2w_A 18 KDLE-FIMEAHNGLS----ARIVQEAGFKGIWGSGLSVSA--Q--LGVRDSNEASWTQVVEVLEFMSDASDVPILLDADT 88 (295)
T ss_dssp SSCE-EEEEECSHHH----HHHHHHHTCSCEEECCHHHHH--T--C---------CHHHHHHHHHHHHTCSSCEEEECCS
T ss_pred CCcE-EEecCCCHHH----HHHHHHcCCCEEEeChHHHHH--h--CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCC
Confidence 3444 3466667554 23333 488888776 22221 0 11222222345667778888888899999999887
Q ss_pred CC-ChhhHHHHHHHHHHcCccEEEeccCc
Q 013813 235 FP-NLQDTIKYAKMLEDAGCSLLAVHGRT 262 (436)
Q Consensus 235 g~-~~~d~~~~ak~le~aG~d~I~VHgRt 262 (436)
|. +..++.+.++.+.++|+++|.+-+..
T Consensus 89 Gyg~~~~v~~~v~~l~~aGaagv~iED~~ 117 (295)
T 1s2w_A 89 GYGNFNNARRLVRKLEDRGVAGACLEDKL 117 (295)
T ss_dssp SCSSHHHHHHHHHHHHHTTCCEEEEECBC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 74 44567788899999999999997664
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.69 Score=44.75 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=56.7
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGa 310 (436)
.|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. +..|+
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Ga 97 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEATT-MTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGV 97 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCC
Confidence 45566778889899999999999988876421 11111124445555543 58987544444445554433 44699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+-...+..|.
T Consensus 98 davlv~~P~y~~~s 111 (291)
T 3a5f_A 98 DGLLVITPYYNKTT 111 (291)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEEcCCCCCCCC
Confidence 99999988876664
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.58 Score=45.96 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGaD 311 (436)
|.+....+++.+.+.|+++|.+-|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.+. .+..|||
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~-Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad 119 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVGTTGESPT-LTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGAD 119 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCccc-cCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 5566778899999999999999888776421 11111124455555543 5898765454455555543 3446999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+....+..|.
T Consensus 120 avlv~~P~y~~~~ 132 (315)
T 3si9_A 120 AVLVVTPYYNRPN 132 (315)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988877664
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.59 E-value=0.67 Score=44.94 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=56.3
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEE-EccCCCCHHHHHHHH---HhcCc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL-ANGNVRHMEDVQKCL---EETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVi-anGGI~s~eda~~~l---~~tGa 310 (436)
|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++||| +.|+.. .+++.++. +..|+
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~-t~~ai~la~~A~~~Ga 99 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFGTTGEGCS-VGSRERQAILSSFIAAGIAPSRIVTGVLVDS-IEDAADQSAEALNAGA 99 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHTTCCGGGEEEEECCSS-HHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCcc-HHHHHHHHHHHHhcCC
Confidence 5566778889999999999999988876421 11111224455555554 58987 455544 44444333 34699
Q ss_pred ceeeeehHHhhC-Cc
Q 013813 311 EGVLSAESLLEN-PA 324 (436)
Q Consensus 311 DgVmIGRgal~n-P~ 324 (436)
|+||+....+.. |.
T Consensus 100 davlv~~P~y~~~~s 114 (294)
T 3b4u_A 100 RNILLAPPSYFKNVS 114 (294)
T ss_dssp SEEEECCCCSSCSCC
T ss_pred CEEEEcCCcCCCCCC
Confidence 999999888766 54
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.57 E-value=0.71 Score=44.73 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=57.0
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGa 310 (436)
.|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.+. .+..|+
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga 96 (294)
T 2ehh_A 18 VDYEALGNLIEFHVDNGTDAILVCGTTGESPT-LTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGA 96 (294)
T ss_dssp ECHHHHHHHHHHHHTTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 35667778899999999999999888876421 11111124445555543 5898744444444444433 344699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+-...+..|.
T Consensus 97 davlv~~P~y~~~s 110 (294)
T 2ehh_A 97 DGALVVVPYYNKPT 110 (294)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988877664
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=89.57 E-value=0.76 Score=44.42 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=56.8
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEE-EccCCCCHHHHHHH---HHhcC
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL-ANGNVRHMEDVQKC---LEETG 309 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVi-anGGI~s~eda~~~---l~~tG 309 (436)
.|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++||| +.|+..+ +++.+. .+..|
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t-~~ai~la~~a~~~G 95 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVGTTGESPT-LSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCT-EEAIELSVFAEDVG 95 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEECCCSSH-HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCH-HHHHHHHHHHHhcC
Confidence 36667778899999999999999888876431 11111124445555543 58987 4555544 444433 34469
Q ss_pred cceeeeehHHhhCCc
Q 013813 310 CEGVLSAESLLENPA 324 (436)
Q Consensus 310 aDgVmIGRgal~nP~ 324 (436)
+|+||+-...+..|.
T Consensus 96 adavlv~~P~y~~~s 110 (289)
T 2yxg_A 96 ADAVLSITPYYNKPT 110 (289)
T ss_dssp CSEEEEECCCSSCCC
T ss_pred CCEEEECCCCCCCCC
Confidence 999999988877665
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A | Back alignment and structure |
|---|
Probab=89.55 E-value=12 Score=38.37 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=84.6
Q ss_pred CCEEEEecCC--CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc---cCccEEEE
Q 013813 158 RPLFVQFCAN--DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN---LNVPVSCK 231 (436)
Q Consensus 158 ~plivQL~g~--d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~---~~iPVsVK 231 (436)
.|+++=+=.. ++....+.++. ++.|+.+|.|--..... .+.|..++.-+-..+...+=|++++.+ .+.++.|=
T Consensus 153 lPviaD~DtGyG~~~~v~~tv~~~~~aGaaGi~IEDq~~~~-KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~Ii 231 (435)
T 3lg3_A 153 LPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLAAV-KKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLLI 231 (435)
T ss_dssp CCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEESBCGGG-CBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCeEEECCCCCCCcHHHHHHHHHHHHcCCEEEEEecCCCCc-cccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 8999887432 44456666655 45699999998544211 122333333333444433333444332 35555555
Q ss_pred eccC--------------------------------CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHH
Q 013813 232 IRVF--------------------------------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 232 iRlg--------------------------------~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~ 279 (436)
-|.. ...+++++=++...+ |+|.|-++... .+.+.++
T Consensus 232 ARTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E~~~----------~~~~ei~ 300 (435)
T 3lg3_A 232 ARTDADAADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCETST----------PDLALAK 300 (435)
T ss_dssp EEECTTTCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEECCSS----------CCHHHHH
T ss_pred EEcCCccccccccccccccchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEecCCC----------CCHHHHH
Confidence 5543 346677777888888 99999987653 2345555
Q ss_pred HHHhhCC----CcEE-EccC-CCC------HHHHHH---HHHhcCcceeeeehHHhh
Q 013813 280 AVKNALR----IPVL-ANGN-VRH------MEDVQK---CLEETGCEGVLSAESLLE 321 (436)
Q Consensus 280 ~ik~~~~----iPVi-anGG-I~s------~eda~~---~l~~tGaDgVmIGRgal~ 321 (436)
++.+.++ ..++ +|.. ..+ .++++. -|..-|+..|.++-+.+.
T Consensus 301 ~f~~~v~~~~P~~~La~~~sPsfnw~~~~~d~~~~~f~~eLa~lG~~~v~~~la~~r 357 (435)
T 3lg3_A 301 RFADAVHAQFPGKLLAYNCSPSFNWKKNLTDQQIASFQDELSAMGYKYQFITLAGIH 357 (435)
T ss_dssp HHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHHHHHHHHHTTEEEEEETTHHHH
T ss_pred HHHHHhccccCCeEEEeCCCCCccccccCCHHHHHHHHHHHHHcCCcEEEeCcHHHH
Confidence 5555432 3333 4332 233 333332 244458999998866544
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.53 E-value=1.7 Score=43.43 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=81.0
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCC-CCHHHHHHHHHhcCcceeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV-RHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI-~s~eda~~~l~~tGaDgVmI 315 (436)
+.+.+++-++.|.++|++.|-+.--+ ..+.+.++.|++..++|+++ || +++.-+.++++. |+|.+-|
T Consensus 44 D~~atv~Qi~~l~~aG~diVRvavp~---------~~~a~al~~I~~~~~vPlva--DiHf~~~lal~a~e~-G~dklRI 111 (366)
T 3noy_A 44 DVEATLNQIKRLYEAGCEIVRVAVPH---------KEDVEALEEIVKKSPMPVIA--DIHFAPSYAFLSMEK-GVHGIRI 111 (366)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCS---------HHHHHHHHHHHHHCSSCEEE--ECCSCHHHHHHHHHT-TCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC---------hHHHHHHHHHHhcCCCCEEE--eCCCCHHHHHHHHHh-CCCeEEE
Confidence 45677777888999999999774322 12357789999999999875 77 789999999986 9999999
Q ss_pred ehHHhhCCccchhhhhh--hhcc-------CCc-------ccCCCCHHHHHHHHHHHHHHHHhCC
Q 013813 316 AESLLENPALFAGFRTA--EWIV-------GSE-------EISKDGNLDQADLLVEYLKLCEKYP 364 (436)
Q Consensus 316 GRgal~nP~lf~~i~~~--~~~~-------~~~-------~~~~~~~~~~~~~~~~yl~~~~~~~ 364 (436)
-=|-+.+.+-|.++-.. ++.. .|+ ....++.....+-+.+|.+++++++
T Consensus 112 NPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~g 176 (366)
T 3noy_A 112 NPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWG 176 (366)
T ss_dssp CHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 99999988766654210 0000 000 0011344556677888888888765
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=89.32 E-value=0.75 Score=44.90 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=56.8
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGa 310 (436)
.|.+....+++.+.+.|+++|.+.|-|.+...- +..-..+.++.+.+.+ ++|||+.=|=.+.+++.+. .+..||
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~L-s~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Ga 108 (306)
T 1o5k_A 30 LDLESYERLVRYQLENGVNALIVLGTTGESPTV-NEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGA 108 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGC-CHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhC-CHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCC
Confidence 366677788999999999999998888764211 1111124445555543 5898744443444444433 234699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+-...+..|.
T Consensus 109 davlv~~P~y~~~s 122 (306)
T 1o5k_A 109 NGVLVVTPYYNKPT 122 (306)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988877664
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=89.26 E-value=0.74 Score=45.79 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=56.4
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGaD 311 (436)
|.+...++++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.+. .+..|||
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 128 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLGSGGEFSQ-LGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGAD 128 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 5566778899999999999999988876421 11111124455555544 5898754443444444443 3346999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+-...+..|.
T Consensus 129 avlv~~P~Y~~~s 141 (343)
T 2v9d_A 129 GIVVINPYYWKVS 141 (343)
T ss_dssp EEEEECCSSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988877664
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=2.3 Score=40.98 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=56.5
Q ss_pred HHHH-HHHHHHHcCCCcEEEEecCCCchhhhcCccccccc---CChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHH
Q 013813 169 PEIL-LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 169 ~e~~-~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll---~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ 244 (436)
.+.. .+|-+++++|+|.|||.. +... =|+... ...+.+.-+++++++ .++||+|-.+- .+.
T Consensus 29 ~~~a~~~a~~m~~~GAdiIDIGg-eSTR------Pga~~vs~eeE~~Rv~pvi~~l~~-~~v~iSIDT~~-------~~V 93 (270)
T 4hb7_A 29 VETAINRVKAMIDEGADIIDVGG-VSTR------PGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFR-------SEV 93 (270)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEES-CCCS------TTCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSC-------HHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECC-ccCC------CCCCCCchHHHHHHHHHHHHHhhc-CCCeEEEECCC-------HHH
Confidence 3433 444467789999999983 2221 133322 234556677778764 58999998542 245
Q ss_pred HHHHHHcCccEEE-eccCcccccCCCCCccCHHHHHHHHhhCCCcEEE
Q 013813 245 AKMLEDAGCSLLA-VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 291 (436)
Q Consensus 245 ak~le~aG~d~I~-VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia 291 (436)
++.+.++|++.|. |.+...+ -+++..++ ..++|++.
T Consensus 94 a~~al~aGa~iINDVs~g~~d----------~~m~~~va-~~~~~~vl 130 (270)
T 4hb7_A 94 AEACLKLGVDMINDQWAGLYD----------HRMFQIVA-KYDAEIIL 130 (270)
T ss_dssp HHHHHHHTCCEEEETTTTSSC----------THHHHHHH-HTTCEEEE
T ss_pred HHHHHHhccceeccccccccc----------hhHHHHHH-HcCCCeEE
Confidence 6677778888773 4433222 23333333 35677765
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=3.8 Score=40.87 Aligned_cols=167 Identities=11% Similarity=0.080 Sum_probs=93.2
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
++|+++|-=..-.+..+-..+...|.+.+.+.-++.+.-.. +..|-++-+ .
T Consensus 47 ~NPv~lAAG~~~~~~e~~~~l~~~G~G~v~~ktvt~~pq~G-------------Np~PR~~~~----------------~ 97 (354)
T 4ef8_A 47 ANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREG-------------NPTPRYQAL----------------P 97 (354)
T ss_dssp SSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCC-------------SCSCCEEEE----------------T
T ss_pred CCCCEeccCCCCCCHHHHHHHHHcCCCeEEeCcccCcccCC-------------CCCCcEEec----------------c
Confidence 67888887777555555455556788877766664433111 122333322 0
Q ss_pred CCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHH---HcCccEEE
Q 013813 182 YCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE---DAGCSLLA 257 (436)
Q Consensus 182 g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le---~aG~d~I~ 257 (436)
.++ || +|-+.. | .+...+-++.+++..+.||.+-+ .|.+.++..+.++.++ +.|+|+|.
T Consensus 98 --~~~-iN~~G~~n~-------G------~~~~~~~l~~~~~~~~~pvivsI-~G~~~~d~~~~a~~l~~~~~~g~d~ie 160 (354)
T 4ef8_A 98 --LGS-INSMGLPNN-------G------FDFYLAYAAEQHDYGKKPLFLSM-SGLSMRENVEMCKRLAAVATEKGVILE 160 (354)
T ss_dssp --TEE-EECCCCCBC-------C------HHHHHHHHHHTCCTTTCCEEEEE-CCSSHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred --hhh-hccCCCCCc-------C------HHHHHHHHHHHhhcCCCcEEEEe-ccCCHHHHHHHHHHHhhhhhcCCCEEE
Confidence 122 34 232221 1 23333333444444578988875 3667888888999988 67999998
Q ss_pred eccCcccccCCCCCccC----HHHHHHHHhhCCCcEEE--ccCCCCHHHHHHH---HHhcC-cceeee
Q 013813 258 VHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLA--NGNVRHMEDVQKC---LEETG-CEGVLS 315 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad----~~~i~~ik~~~~iPVia--nGGI~s~eda~~~---l~~tG-aDgVmI 315 (436)
|.--......+.....+ .++++.+++.+++||++ .=++ +.+++.++ +...| +|+|.+
T Consensus 161 lNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~~-d~~~~~~~a~~~~~~Gg~d~I~~ 227 (354)
T 4ef8_A 161 LNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYF-DFAHFDAAAEILNEFPKVQFITC 227 (354)
T ss_dssp EECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCCC-SHHHHHHHHHHHHTCTTEEEEEE
T ss_pred EeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCCC-CHHHHHHHHHHHHhCCCccEEEE
Confidence 85332111111100112 45667778888899864 3344 45444444 44667 999875
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.71 Score=45.68 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=56.1
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEE-EccCCCCHHHHHHH---HHhcCc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL-ANGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVi-anGGI~s~eda~~~---l~~tGa 310 (436)
|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++||| +.|+..+ +++.+. .+..|+
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st-~eai~la~~A~~~Ga 130 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGSTGIYMY-LTREERRRAIEAAATILRGRRTLMAGIGALRT-DEAVALAKDAEAAGA 130 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEEECCSSH-HHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCH-HHHHHHHHHHHhcCC
Confidence 5566778889999999999999988876421 11111124455555544 58987 5555554 444433 344699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+....+..|.
T Consensus 131 davlv~~P~Y~~~s 144 (332)
T 2r8w_A 131 DALLLAPVSYTPLT 144 (332)
T ss_dssp SEEEECCCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988876665
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=89.07 E-value=5.1 Score=36.84 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=79.7
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccc---cccCChHHHHHHHHHHhcccCccEEEEe-
Q 013813 158 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGA---FLMDNLPLVKSLVEKLALNLNVPVSCKI- 232 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs---~Ll~~p~~v~eIv~av~~~~~iPVsVKi- 232 (436)
-++.+|...-....+.++.+.++ .|+|+|||...-|... .+.+ ....+++.+.++-+.+.+ .++.++.=.
T Consensus 10 mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~~~ 84 (262)
T 3p6l_A 10 WRLGMQSYSFHLFPLTEALDKTQELGLKYIEIYPGHKLGG----KWGDKVFDFNLDAQTQKEIKELAAS-KGIKIVGTGV 84 (262)
T ss_dssp EEEEEEGGGGTTSCHHHHHHHHHHTTCCEEEECTTEECCG----GGTTCEESTTCCHHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred cEEEEEecccCCCCHHHHHHHHHHcCCCEEeecCCccccc----ccccccccccCCHHHHHHHHHHHHH-cCCeEEEEec
Confidence 45777776654445667776554 5999999986543210 1111 112245556666555543 355443221
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc---c-C-CCCHHHHHHHHHh
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---G-N-VRHMEDVQKCLEE 307 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian---G-G-I~s~eda~~~l~~ 307 (436)
-.....+.....++.+...|++.|.+|.. ...|+.+..+.+..++.+..- + - +.+++++.++++.
T Consensus 85 ~~~~~~~~~~~~i~~A~~lGa~~v~~~~~----------~~~~~~l~~~a~~~gv~l~~En~~~~~~~~~~~~~~~ll~~ 154 (262)
T 3p6l_A 85 YVAEKSSDWEKMFKFAKAMDLEFITCEPA----------LSDWDLVEKLSKQYNIKISVHNHPQPSDYWKPENLLKAISG 154 (262)
T ss_dssp ECCSSTTHHHHHHHHHHHTTCSEEEECCC----------GGGHHHHHHHHHHHTCEEEEECCSSSSSSSSHHHHHHHHTT
T ss_pred cCCccHHHHHHHHHHHHHcCCCEEEecCC----------HHHHHHHHHHHHHhCCEEEEEeCCCccccCCHHHHHHHHHh
Confidence 12234456667788888999999999852 234777777776656554321 2 1 2478888888874
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=89.06 E-value=0.68 Score=44.98 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=56.1
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEE-EccCCCCHHHHHHH---HHhcCc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL-ANGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVi-anGGI~s~eda~~~---l~~tGa 310 (436)
|.+...++++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++||| +.|+..+ +++.+. .+..|+
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t-~~ai~la~~A~~~Ga 96 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVGTTGESPT-LTEEEHKRVVALVAEQAQGRVPVIAGAGSNNP-VEAVRYAQHAQQAGA 96 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSH-HHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhh-CCHHHHHHHHHHHHHHhCCCCeEEEccCCCCH-HHHHHHHHHHHhcCC
Confidence 5566778899999999999999888876421 11111124445555543 58886 4555544 444433 344699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+-...+..|.
T Consensus 97 davlv~~P~y~~~s 110 (297)
T 2rfg_A 97 DAVLCVAGYYNRPS 110 (297)
T ss_dssp SEEEECCCTTTCCC
T ss_pred CEEEEcCCCCCCCC
Confidence 99999988887665
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=0.81 Score=44.52 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=58.2
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHH---HhcC
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCL---EETG 309 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l---~~tG 309 (436)
.|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.++. +..|
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~-Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~G 103 (301)
T 3m5v_A 25 VDEQSYARLIKRQIENGIDAVVPVGTTGESAT-LTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHG 103 (301)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEECSSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 35667778899999999999999988876421 11111124455555543 58988655544555555433 3469
Q ss_pred cceeeeehHHhhCCc
Q 013813 310 CEGVLSAESLLENPA 324 (436)
Q Consensus 310 aDgVmIGRgal~nP~ 324 (436)
+|+||+-...+..|.
T Consensus 104 adavlv~~P~y~~~s 118 (301)
T 3m5v_A 104 ADGILSVAPYYNKPT 118 (301)
T ss_dssp CSEEEEECCCSSCCC
T ss_pred CCEEEEcCCCCCCCC
Confidence 999999988887775
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=89.06 E-value=0.81 Score=44.76 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=55.7
Q ss_pred HHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh--CCCcEE
Q 013813 214 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVL 290 (436)
Q Consensus 214 ~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVi 290 (436)
.+.++++++.. ..++.|-+. +.++ ++.+.++|+|.|-+..-+ .+.++++.+. .++++.
T Consensus 197 ~~Av~~~r~~~p~~~ieVEvd---tlde----~~eAl~aGaD~I~LDn~~------------~~~l~~av~~i~~~v~ie 257 (298)
T 3gnn_A 197 GEALDAAFALNAEVPVQIEVE---TLDQ----LRTALAHGARSVLLDNFT------------LDMMRDAVRVTEGRAVLE 257 (298)
T ss_dssp HHHHHHHHHHC--CCCEEEES---SHHH----HHHHHHTTCEEEEEESCC------------HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeC---CHHH----HHHHHHcCCCEEEECCCC------------HHHHHHHHHHhCCCCeEE
Confidence 34555555543 344444432 2333 444556899999886422 2445554443 368999
Q ss_pred EccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 291 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 291 anGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++|||+ .+.+.++.+ +|+|++.+|.....-|+
T Consensus 258 aSGGI~-~~~i~~~a~-tGVD~isvG~lt~sa~~ 289 (298)
T 3gnn_A 258 VSGGVN-FDTVRAIAE-TGVDRISIGALTKDVRA 289 (298)
T ss_dssp EESSCS-TTTHHHHHH-TTCSEEECGGGGTSCCC
T ss_pred EEcCCC-HHHHHHHHH-cCCCEEEECCeecCCCc
Confidence 999995 678888776 69999999975444443
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.94 E-value=2.4 Score=42.41 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=57.5
Q ss_pred CCCCEEEEecCCC----H-HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE
Q 013813 156 EDRPLFVQFCAND----P-EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 156 ~e~plivQL~g~d----~-e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV 230 (436)
.+.|+.||=+.+. . ....+..++.++|||.|++-+ |. +...+.+..+++.+++|+++
T Consensus 28 G~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvav--p~----------------~~~a~al~~I~~~~~vPlva 89 (366)
T 3noy_A 28 GDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAV--PH----------------KEDVEALEEIVKKSPMPVIA 89 (366)
T ss_dssp TTSCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEEC--CS----------------HHHHHHHHHHHHHCSSCEEE
T ss_pred CCCcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCC--CC----------------hHHHHHHHHHHhcCCCCEEE
Confidence 5789999988764 3 344444456678999999953 42 22356778888889999999
Q ss_pred EeccCCChhhHHHHHHHHHHcCccEEEeccC
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG~d~I~VHgR 261 (436)
.|-. +. .+|..+.++|+|.+-+.+.
T Consensus 90 DiHf--~~----~lal~a~e~G~dklRINPG 114 (366)
T 3noy_A 90 DIHF--AP----SYAFLSMEKGVHGIRINPG 114 (366)
T ss_dssp ECCS--CH----HHHHHHHHTTCSEEEECHH
T ss_pred eCCC--CH----HHHHHHHHhCCCeEEECCc
Confidence 9533 33 3455577899999977644
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.87 E-value=0.62 Score=45.73 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=57.1
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGaD 311 (436)
|.+....+++.+.+.|+++|.+-|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.++ .+..|||
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~-Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 121 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLGSTGEGAY-LSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAE 121 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 5566778899999999999999888776421 11111124455555543 5888765454455555443 3346999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+....+..|.
T Consensus 122 avlv~~P~y~~~s 134 (315)
T 3na8_A 122 AVMVLPISYWKLN 134 (315)
T ss_dssp EEEECCCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988877765
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=1.3 Score=43.16 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
+|.+.+++|+|.||||.-+--+ |.-.-......+.+..+++++++. ++||+|-..- .+.++.+.++|+
T Consensus 57 ~a~~~v~~GAdIIDIGgeSTrP----ga~~v~~~eE~~Rv~pvI~~l~~~-~vpiSIDT~~-------~~Va~aAl~aGa 124 (294)
T 2dqw_A 57 RAREMVAEGADILDLGAESTRP----GAAPVPVEEEKRRLLPVLEAVLSL-GVPVSVDTRK-------PEVAEEALKLGA 124 (294)
T ss_dssp HHHHHHHHTCSEEEEECC---------------CCHHHHHHHHHHHHHTT-CSCEEEECSC-------HHHHHHHHHHTC
T ss_pred HHHHHHHCCCCEEEECCCcCCC----CCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEECCC-------HHHHHHHHHhCC
Confidence 4446678899999999733111 000111233456677788888766 8999998321 234555556688
Q ss_pred cEE
Q 013813 254 SLL 256 (436)
Q Consensus 254 d~I 256 (436)
+.|
T Consensus 125 ~iI 127 (294)
T 2dqw_A 125 HLL 127 (294)
T ss_dssp SEE
T ss_pred CEE
Confidence 765
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.81 E-value=0.85 Score=41.51 Aligned_cols=83 Identities=7% Similarity=0.039 Sum_probs=56.5
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHH-HHHHHHhcCcceeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED-VQKCLEETGCEGVLS 315 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~ed-a~~~l~~tGaDgVmI 315 (436)
+..+..+.++.+++.|++++.+-- .+...........+.++++++.++.|+.+-+.|.+.++ ++.+++ .|+|+|.+
T Consensus 14 D~~~~~~~~~~~~~~G~~~i~~~~--~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~-~gad~v~v 90 (220)
T 2fli_A 14 DYANFASELARIEETDAEYVHIDI--MDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQ-AGADIMTI 90 (220)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEE--EBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHH-HTCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--ecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHH-cCCCEEEE
Confidence 456777888999999999875531 11110000122378899999888899999999998864 544444 59999998
Q ss_pred ehHHhhC
Q 013813 316 AESLLEN 322 (436)
Q Consensus 316 GRgal~n 322 (436)
.-.....
T Consensus 91 h~~~~~~ 97 (220)
T 2fli_A 91 HTESTRH 97 (220)
T ss_dssp EGGGCSC
T ss_pred ccCcccc
Confidence 7554433
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=88.64 E-value=3.5 Score=38.59 Aligned_cols=119 Identities=14% Similarity=0.060 Sum_probs=77.0
Q ss_pred cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-CC----ChhhH---HHHHHHHHHc
Q 013813 180 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-FP----NLQDT---IKYAKMLEDA 251 (436)
Q Consensus 180 ~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-g~----~~~d~---~~~ak~le~a 251 (436)
+.|+|-|||+.+-.. | .+--....++.+... .+.+++||.|=||. +. +..+. .+=++.+.++
T Consensus 19 ~~GAdRIELc~~L~~-----G----GlTPS~g~i~~~~~~-~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~ 88 (224)
T 2bdq_A 19 KAIISRVELCDNLAV-----G----GTTPSYGVIKEANQY-LHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVEL 88 (224)
T ss_dssp TTTCCEEEEEBCGGG-----T----CBCCCHHHHHHHHHH-HHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCEEEEcCCccc-----C----CcCCCHHHHHHHHHh-hhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 458999999953211 1 233334445444211 25668999999987 21 22222 3346678899
Q ss_pred CccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccC---C--CCHHHHHHHHHhcCcceee
Q 013813 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---V--RHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 252 G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGG---I--~s~eda~~~l~~tGaDgVm 314 (436)
|+|+|.+-.=+.+ |..|.+.++++.+.. +++|..-=- + .++..+.+.|...|++.|.
T Consensus 89 GadGvV~G~Lt~d------g~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rIL 151 (224)
T 2bdq_A 89 ESDALVLGILTSN------NHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRIL 151 (224)
T ss_dssp TCSEEEECCBCTT------SSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEeeECCC------CCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEE
Confidence 9999988655544 268999998887654 678776443 3 6777777777667999886
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=88.59 E-value=7.5 Score=36.05 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=52.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc--cCccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LNVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~--~~iPVsVKiRl 234 (436)
..++++.+=-.+.++..+.++.+.+.++.+.+++ +.- . .+| ++ +++++++. ..+.+.+| +
T Consensus 12 ~~~lilAlD~~~~~~a~~~v~~~~~~v~~~Kvg~--~lf--~--~~G------~~----~v~~l~~~~g~~v~lD~K--l 73 (228)
T 3m47_A 12 MNRLILAMDLMNRDDALRVTGEVREYIDTVKIGY--PLV--L--SEG------MD----IIAEFRKRFGCRIIADFK--V 73 (228)
T ss_dssp GGGEEEECCCCSHHHHHHHHHTTTTTCSEEEEEH--HHH--H--HHC------TH----HHHHHHHHHCCEEEEEEE--E
T ss_pred CCCeEEEeCCCCHHHHHHHHHHcCCcccEEEEcH--HHH--H--hcC------HH----HHHHHHhcCCCeEEEEEe--e
Confidence 3467777655565555555554444578998875 221 1 123 23 33444442 34566666 5
Q ss_pred CCChhh-HHHHHHHHHHcCccEEEeccCc
Q 013813 235 FPNLQD-TIKYAKMLEDAGCSLLAVHGRT 262 (436)
Q Consensus 235 g~~~~d-~~~~ak~le~aG~d~I~VHgRt 262 (436)
. ++.+ ...+++.+.++|+|.++||+-.
T Consensus 74 ~-DipnTv~~~~~~~~~~gad~vtvh~~~ 101 (228)
T 3m47_A 74 A-DIPETNEKICRATFKAGADAIIVHGFP 101 (228)
T ss_dssp C-SCHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred c-ccHhHHHHHHHHHHhCCCCEEEEeccC
Confidence 5 4443 4557888889999999999753
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=88.58 E-value=6.6 Score=37.43 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=88.5
Q ss_pred CCCEEEEe------cCCCHHHHHHHH---HHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCc
Q 013813 157 DRPLFVQF------CANDPEILLNAA---RRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 157 e~plivQL------~g~d~e~~~~AA---~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i 226 (436)
+.|+.|=| |..+.+++.... +.+ +.|+|+|-+-+--|.. .=|.+.+.+++++.. +.
T Consensus 51 ~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg-----------~iD~~~~~~Li~~a~---~~ 116 (256)
T 1twd_A 51 TIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDG-----------NVDMPRMEKIMAAAG---PL 116 (256)
T ss_dssp CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS-----------SBCHHHHHHHHHHHT---TS
T ss_pred CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC-----------CcCHHHHHHHHHHhC---CC
Confidence 45666555 235566666554 333 4599999887654431 136788888887754 56
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l 305 (436)
+++.= |..+...+..+-.+.+.+.|++.|--+|....- .-..+.++++.+.. ++-|++.|||+. +.+.+++
T Consensus 117 ~vTFH-RAfD~~~d~~~ale~L~~lG~~rILTSG~~~~a------~~g~~~L~~Lv~~a~~i~Im~GgGv~~-~Ni~~l~ 188 (256)
T 1twd_A 117 AVTFH-RAFDMCANPLYTLNNLAELGIARVLTSGQKSDA------LQGLSKIMELIAHRDAPIIMAGAGVRA-ENLHHFL 188 (256)
T ss_dssp EEEEC-GGGGGCSCHHHHHHHHHHHTCCEEEECTTSSST------TTTHHHHHHHHTSSSCCEEEEESSCCT-TTHHHHH
T ss_pred cEEEE-CchhccCCHHHHHHHHHHcCCCEEECCCCCCCH------HHHHHHHHHHHHhhCCcEEEecCCcCH-HHHHHHH
Confidence 76553 443333455666778888999999777654321 22356677776533 677888899974 6677777
Q ss_pred HhcCcceeeee
Q 013813 306 EETGCEGVLSA 316 (436)
Q Consensus 306 ~~tGaDgVmIG 316 (436)
.+|+..+=.+
T Consensus 189 -~tGv~e~H~S 198 (256)
T 1twd_A 189 -DAGVLEVHSS 198 (256)
T ss_dssp -HHTCSEEEEC
T ss_pred -HcCCCeEeEC
Confidence 6899887755
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=88.39 E-value=8.6 Score=36.08 Aligned_cols=124 Identities=15% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc--cCccEEEEeccCCChhhH----
Q 013813 169 PEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LNVPVSCKIRVFPNLQDT---- 241 (436)
Q Consensus 169 ~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~--~~iPVsVKiRlg~~~~d~---- 241 (436)
++....+++.+.. |+|.|.+| .+|+ ++.+...++...+. .+.|..+-+-...+.++.
T Consensus 72 ~nTv~~~~~~~~~~gad~vTvh-----------~~~G-----~~~~~~a~~~~~~~~~~~~~~l~~Vt~LTS~~~~~l~~ 135 (239)
T 3tr2_A 72 PQTVAGACRAVAELGVWMMNIH-----------ISGG-----RTMMETVVNALQSITLKEKPLLIGVTILTSLDGSDLKT 135 (239)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEE-----------GGGC-----HHHHHHHHHHHHTCCCSSCCEEEEECSCTTCCHHHHHH
T ss_pred chHHHHHHHHHHhCCCCEEEEe-----------ccCC-----HHHHHHHHHHHHhcCcCCCceEEEEEEEeeCCHHHHHh
Q ss_pred -----------HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHH---------
Q 013813 242 -----------IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMED--------- 300 (436)
Q Consensus 242 -----------~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~ed--------- 300 (436)
.++++...++|++++++.+.. +..+++.. .-.++...||+-..+
T Consensus 136 ~g~~~~~~~~v~~~A~~a~~~g~~GvV~s~~e---------------~~~ir~~~~~~fl~vtPGIr~~g~~~~dQ~rv~ 200 (239)
T 3tr2_A 136 LGIQEKVPDIVCRMATLAKSAGLDGVVCSAQE---------------AALLRKQFDRNFLLVTPGIRLETDEKGDQKRVM 200 (239)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHTCCEEECCHHH---------------HHHHHTTCCTTSEEEECCBC----------CCB
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCEEEECchh---------------HHHHHHhcCCCcEEECCCcCCCCCCcCcccccC
Q ss_pred -HHHHHHhcCcceeeeehHHhhCCc
Q 013813 301 -VQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 301 -a~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
..++++. |+|.+++||+++..++
T Consensus 201 t~~~~~~a-Gad~lVvGr~I~~a~d 224 (239)
T 3tr2_A 201 TPRAAIQA-GSDYLVIGRPITQSTD 224 (239)
T ss_dssp CHHHHHHH-TCSEEEECHHHHTSSS
T ss_pred CHHHHHHc-CCCEEEEChHHhCCCC
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.32 E-value=0.71 Score=44.68 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=56.1
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEE-EccCCCCHHHHHHH---HHhcCc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL-ANGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVi-anGGI~s~eda~~~---l~~tGa 310 (436)
|.+....+++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++||| +.|+-.+. ++.++ .+..|+
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~-~ai~la~~A~~~Ga 96 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGTTGESPT-LSKSEHEQVVEITIKTANGRVPVIAGAGSNSTA-EAIAFVRHAQNAGA 96 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHH-HHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCccHH-HHHHHHHHHHHcCC
Confidence 5566778899999999999999888876421 11111124445555543 58886 55555554 44433 344699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+-...+..|.
T Consensus 97 davlv~~P~y~~~s 110 (292)
T 2vc6_A 97 DGVLIVSPYYNKPT 110 (292)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEEcCCCCCCCC
Confidence 99999988876664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 436 | ||||
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 7e-41 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 2e-07 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 3e-07 | |
| d1h5ya_ | 252 | c.1.2.1 (A:) Cyclase subunit (or domain) of imidaz | 1e-06 | |
| d1ep3a_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 3e-06 | |
| d1jvna1 | 323 | c.1.2.1 (A:230-552) Cyclase subunit (or domain) of | 1e-05 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 3e-05 | |
| d1ps9a1 | 330 | c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-ter | 9e-05 | |
| d1ka9f_ | 251 | c.1.2.1 (F:) Cyclase subunit (or domain) of imidaz | 3e-04 | |
| d1vzwa1 | 239 | c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoi | 0.002 | |
| d2a9va1 | 196 | c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA | 0.002 | |
| d1z41a1 | 337 | c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacill | 0.002 | |
| d1djqa1 | 340 | c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N- | 0.004 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 145 bits (366), Expect = 7e-41
Identities = 71/312 (22%), Positives = 140/312 (44%), Gaps = 14/312 (4%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQ 163
K+ +APM ++ FR L +GA+ A++ M+ ++ F + + + EE +R + VQ
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAVQ 60
Query: 164 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
++P L AAR + ++D+N GCP R + G L+ +L + +V +L +
Sbjct: 61 IFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKS 120
Query: 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 283
++ S K R+ + + ++L + G + +H RT RA+W A+ ++
Sbjct: 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV--VQSFTGRAEWKALSVLEK 178
Query: 284 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 343
+ V +G++ ED ++ LEE+GC+G+L A + P +F + S + S+
Sbjct: 179 RIPTFV--SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLR---SGKYSE 233
Query: 344 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLT---- 399
+ +L+L K + + + K L + + G R ++
Sbjct: 234 PSREEILRTFERHLELLIKTKGERKAVV-EMRKFLAGYTKDLKGARRFREKVMKIEEVQI 292
Query: 400 -FEFLYNLVDRL 410
E YN + +
Sbjct: 293 LKEMFYNFIKEV 304
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 49.5 bits (117), Expect = 2e-07
Identities = 26/196 (13%), Positives = 55/196 (28%), Gaps = 38/196 (19%)
Query: 168 DPEILLNAARRVE-PYCDYVDINLGCPQRIARR--------------GNYGAFLMDNLPL 212
I+ A + N + + F+
Sbjct: 21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE 80
Query: 213 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY-------------------AKMLEDAGC 253
V L+E + + + + R L + + Y AK G
Sbjct: 81 VDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGF 140
Query: 254 SLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311
+ HG T + ++ D+ +K V ++ V+A GNV + ++ + + G
Sbjct: 141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVM-DLGVH 199
Query: 312 GVLSAESLLENPALFA 327
+ ++ P
Sbjct: 200 CSVVGGAIT-RPKEIT 214
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 49.6 bits (117), Expect = 3e-07
Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 25/193 (12%)
Query: 144 EKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYG 203
+ + + N + + + + D +++NL CP + RG
Sbjct: 91 QSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGL 150
Query: 204 AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA--KMLEDAGCSLLAVHGR 261
A D LV+++ + + +P K+ +I A + D + V G
Sbjct: 151 ACGQDPE-LVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGL 209
Query: 262 TRDEKDGKKFRA--------------------DWNAIKAVKNAL-RIPVLANGNVRHMED 300
+ DG + A A+ + AL P+LA G + E
Sbjct: 210 MGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAES 269
Query: 301 VQKCLEETGCEGV 313
+ L +G +
Sbjct: 270 GLQFL-HSGASVL 281
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 46.9 bits (111), Expect = 1e-06
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 299
D +K+AK +E+ G + + T ++DG D I+ V +++RIPV+A+G +E
Sbjct: 154 DAVKWAKEVEELGAGEILL---TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVE 210
Query: 300 DVQKCLEETGCEGVLSAESLLEN 322
+ G + VL+A
Sbjct: 211 HFYE-AAAAGADAVLAASLFHFR 232
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 46.2 bits (108), Expect = 3e-06
Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 25/227 (11%)
Query: 119 RMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARR 178
R+ G A +EK + V + + A
Sbjct: 62 RVAETASGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIG 121
Query: 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 238
+++N+ CP + + + +LV+ VP+ K+ PN+
Sbjct: 122 DAANVKAIELNISCPNVKHGGQAF----GTDPEVAAALVKACKAVSKVPLYVKL--SPNV 175
Query: 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------------------KKFRADWNAIKA 280
D + AK +E AG L + + I
Sbjct: 176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQ 235
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
V + IP++ G V + +DV + G V + +P +
Sbjct: 236 VAQDVDIPIIGMGGVANAQDVLEMYM-AGASAVAVGTANFADPFVCP 281
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Score = 44.4 bits (104), Expect = 1e-05
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 13/164 (7%)
Query: 168 DPEILLNAARRVEPYCDYVDINLGC-PQRI-----ARRGNYGAFLMDNLPLVKSLVEKLA 221
E R + I+ Q + +R + + ++
Sbjct: 141 AAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPN 200
Query: 222 LNLNVPVSCKI---RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
C I R +L + + E G + ++ +D + D I
Sbjct: 201 GEKYCWYQCTIKGGRESRDLGV-WELTRACEALGAGEILLNCIDKDGSNS---GYDLELI 256
Query: 279 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322
+ VK+A++IPV+A+ E ++ +T + L A
Sbjct: 257 EHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 300
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 42.5 bits (99), Expect = 3e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 300
T + AG + ++ D I+A+ A I V+A G + E+
Sbjct: 139 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEE 197
Query: 301 VQKCLEETGCEGVLSAESLLENPALFAGFRTA 332
+K + G G++ ++ + F A
Sbjct: 198 AKKIN-DLGVAGIVVGGAITRPKEIAERFIEA 228
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 41.8 bits (97), Expect = 9e-05
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAV 281
+ + +T++ A+ +E AG +++ R A + +
Sbjct: 216 SMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL 275
Query: 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
K + +P++ + + L + V A L + L
Sbjct: 276 KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAEL 319
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Score = 40.1 bits (93), Expect = 3e-04
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 299
+++A + G + + T ++DG K D + V A+ +PV+A+G ME
Sbjct: 152 HAVEWAVKGVELGAGEILL---TSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRME 208
Query: 300 DVQKCLEETGCEGVLSAESLLEN 322
+ + G E L+A
Sbjct: 209 HFLE-AFQAGAEAALAASVFHFG 230
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Score = 37.6 bits (86), Expect = 0.002
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303
L GC+ V +D G + +K V A PV+A+G V ++D++
Sbjct: 150 TLDRLNKEGCARYVVTDIAKD---GTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRA 206
Query: 304 C--LEETGCEGVLSAESLLEN 322
L G EG + ++L
Sbjct: 207 IAGLVPAGVEGAIVGKALYAK 227
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.8 bits (84), Expect = 0.002
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 402 FLYNLVDRLRELGVRIPLYKKDADDAEILADD 433
+ + LRELGV + D D +E+ D
Sbjct: 13 WTHREWRVLRELGVDTKIVPNDIDSSELDGLD 44
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Score = 37.6 bits (86), Expect = 0.002
Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 7/157 (4%)
Query: 176 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235
+ Y+ P R YG + ++ +++++ + P+ ++
Sbjct: 159 VIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSAS 218
Query: 236 PNLQD------TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIP 288
I +AK +++ G L+ D F + + ++ +
Sbjct: 219 DYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMA 278
Query: 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
A G + ++ L+ + + LL +P
Sbjct: 279 TGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFF 315
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 36.9 bits (84), Expect = 0.004
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 237 NLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNA--IKAVKNALRIPVLANG 293
+ Q ++ A L D ++ + D + ++ +K VK + PVL G
Sbjct: 239 DGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVG 298
Query: 294 NVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
E + + + + + + A + +P L
Sbjct: 299 RYTDPEKMIEIVTKGYADIIGCARPSIADPFL 330
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 436 | |||
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 100.0 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.94 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 99.94 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 99.93 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 99.91 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.9 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 99.87 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 99.87 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.84 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 99.81 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.79 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.77 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.72 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.71 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.71 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.67 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.21 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.19 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.11 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.06 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 98.96 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.93 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 98.92 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.85 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.82 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 98.8 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.74 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.73 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 98.68 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 98.66 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 98.63 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.63 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 98.61 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 98.55 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.51 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.44 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 98.41 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.38 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 98.31 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 98.3 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 98.23 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 98.18 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.15 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.14 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.11 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.1 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 98.1 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.09 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.02 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.96 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 97.93 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.89 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 97.87 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 97.85 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 97.85 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.8 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.77 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 97.75 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 97.74 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 97.7 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.68 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 97.66 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 97.51 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 97.49 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 97.49 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.43 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.39 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.32 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 97.3 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 97.27 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 97.15 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 97.13 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 97.05 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 96.93 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 96.87 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 96.85 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 96.76 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 96.75 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 96.75 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.63 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 96.59 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 96.53 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 96.51 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 96.49 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 96.46 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 96.41 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.26 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 96.23 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 96.1 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 96.03 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 96.02 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 95.88 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 95.87 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.85 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 95.84 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 95.73 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 95.72 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 95.72 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 95.52 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 95.47 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 95.42 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 95.37 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 95.33 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.21 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 95.13 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 95.12 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 95.03 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 95.03 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 95.02 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 94.96 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 94.93 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 94.89 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 94.89 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 94.49 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 94.36 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 94.05 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 93.94 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 93.86 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 93.82 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.79 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 93.75 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 93.64 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 93.62 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 93.53 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 93.49 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 93.39 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 93.21 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 93.04 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 93.03 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 92.93 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 92.63 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 92.59 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 92.26 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 91.11 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 90.87 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 90.87 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 90.77 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 90.75 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 90.62 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 89.43 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 89.29 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 89.22 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 89.19 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 89.17 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 88.94 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 88.62 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 88.44 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 87.76 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 87.57 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 86.91 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 86.75 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 86.15 | |
| d3bofa2 | 300 | Cobalamin-dependent methionine synthase MetH, N-te | 85.88 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 85.52 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 85.32 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 85.28 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 84.76 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 84.23 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 84.12 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 83.91 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 83.77 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 83.75 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 83.41 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 83.23 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 82.42 | |
| d1n55a_ | 249 | Triosephosphate isomerase {Leishmania mexicana [Ta | 82.09 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 81.86 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 81.66 | |
| d1vqta1 | 198 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 80.75 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 80.37 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.9e-67 Score=520.10 Aligned_cols=298 Identities=23% Similarity=0.365 Sum_probs=263.4
Q ss_pred cEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCC
Q 013813 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYC 183 (436)
Q Consensus 104 ~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~ 183 (436)
+++||||+|+||.+||++|+++|++++|||||+++.+..+.+.... +..++.++|+++||+|+||+.+++||+++++|+
T Consensus 2 ki~LAPM~g~td~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~-~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~~ 80 (305)
T d1vhna_ 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEE-LLPQPHERNVAVQIFGSEPNELSEAARILSEKY 80 (305)
T ss_dssp EEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHH-HSCCTTCTTEEEEEECSCHHHHHHHHHHHTTTC
T ss_pred eEEEECcCCCccHHHHHHHHHHCcCEEEECCEEechhhhCChhhHh-hccCCCCCCeEEEEeccchhhhhhhhhhhhhhe
Confidence 6899999999999999999999999999999999987665544333 446788999999999999999999999998899
Q ss_pred cEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcc
Q 013813 184 DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR 263 (436)
Q Consensus 184 D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~ 263 (436)
|+||||||||++++.++++|++||++|+++.+|++++++.+++|||||+|+|++..+..++++.++++|++.|+|||||+
T Consensus 81 ~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~ 160 (305)
T d1vhna_ 81 KWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV 160 (305)
T ss_dssp SEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCT
T ss_pred eeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999998
Q ss_pred cccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhhhccCCcccCC
Q 013813 264 DEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 343 (436)
Q Consensus 264 ~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~~~~~~~~~~~ 343 (436)
.+ ++.+++||+.|+.+++ ++||++||||.|.+|+.++++.+||||||||||++.|||+|.+++...+ +++ ...
T Consensus 161 ~q--~~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i~~~l~--~~~-~~~ 233 (305)
T d1vhna_ 161 VQ--SFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLR--SGK-YSE 233 (305)
T ss_dssp TT--TTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHH--HSC-CCC
T ss_pred hh--ccccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhhhhhhc--CCC-ccc
Confidence 76 4667999999988876 6999999999999999999999999999999999999999999875332 222 234
Q ss_pred CCHHHHHHHHHHHHHHHHh-CCC--hhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHHHHH
Q 013813 344 DGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 412 (436)
Q Consensus 344 ~~~~~~~~~~~~yl~~~~~-~~~--~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~~~~ 412 (436)
++..++.+++.+|++++.+ |+. .+..+|||+.||+.+ ++++..+|+.|++++ +.+++.++++++.+
T Consensus 234 ~~~~e~~~~~~~~~~~~~~~~g~~~~l~~~rkhl~~~~kg-~p~ak~~R~~l~~~~--~~~el~~~l~~~~~ 302 (305)
T d1vhna_ 234 PSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKD-LKGARRFREKVMKIE--EVQILKEMFYNFIK 302 (305)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHTTT-CTTHHHHHHHHTTCC--CHHHHHHHHHHHHH
T ss_pred chhHHHHHhHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC-CCcHHHHHHHHHhCC--CHHHHHHHHHHHHH
Confidence 6778899999999987654 443 256799999987764 577789999999987 88999999988653
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.94 E-value=1.3e-26 Score=226.87 Aligned_cols=171 Identities=17% Similarity=0.258 Sum_probs=143.6
Q ss_pred ccCCCCCEEEEecCCCHHHHHHHHHHHcC--CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE
Q 013813 153 TCKEDRPLFVQFCANDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 153 ~~~~e~plivQL~g~d~e~~~~AA~~v~~--g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV 230 (436)
....+.|+++|++|++++++.++++.+.. ++|+||||+|||+... .+.....+++++.+++++++...++|+++
T Consensus 94 ~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~v 169 (311)
T d1ep3a_ 94 ENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKH----GGQAFGTDPEVAAALVKACKAVSKVPLYV 169 (311)
T ss_dssp HHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGG----TTEEGGGCHHHHHHHHHHHHHHCSSCEEE
T ss_pred cccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCcccc----cccccccCHHHHHHHHHHHHhccCCCeee
Confidence 34568999999999999999999987753 7899999999998532 34566789999999999999999999999
Q ss_pred EeccCCChhhHHHHHHHHHHcCccEEEeccCccccc--------------CCCCC----ccCHHHHHHHHhhCCCcEEEc
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------DGKKF----RADWNAIKAVKNALRIPVLAN 292 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~--------------~~~~g----~ad~~~i~~ik~~~~iPVian 292 (436)
|++.+. .+..++++.++++|++.+++++++.... .+.+| +..|++++++++.+++|||+|
T Consensus 170 kl~~~~--~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~ 247 (311)
T d1ep3a_ 170 KLSPNV--TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGM 247 (311)
T ss_dssp EECSCS--SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEEC
T ss_pred eecccc--cchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEe
Confidence 998865 3556789999999999999987653211 01122 246899999999999999999
Q ss_pred cCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
|||.|++|+.+++.. |||+||||||++.|||+|.++.
T Consensus 248 GGI~s~~Da~~~i~~-GAd~V~ig~~~~~~P~i~~~I~ 284 (311)
T d1ep3a_ 248 GGVANAQDVLEMYMA-GASAVAVGTANFADPFVCPKII 284 (311)
T ss_dssp SSCCSHHHHHHHHHH-TCSEEEECTHHHHCTTHHHHHH
T ss_pred CCcCCHHHHHHHHHc-CCCEEEecHHHHcCChHHHHHH
Confidence 999999999999974 9999999999999999998764
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=3.1e-26 Score=228.33 Aligned_cols=231 Identities=12% Similarity=0.146 Sum_probs=185.6
Q ss_pred CCcEEEccCCC---------CCcHHHHHHHHHh--CCCeEEeCcccch--h--h-----ccChhh----hhhhhhccCCC
Q 013813 102 RPKLIVAPMVD---------NSELPFRMLCRRY--GAEAAYTPMLHSR--I--F-----TESEKY----RNEEFATCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~g---------vtd~~fR~l~~~~--Ga~l~~Temisa~--~--l-----~~~~~~----~~~~~~~~~~e 157 (436)
+|+|++|||.. +|+..++.+.++. |+++++||.+... . + ..+... +...-..+..+
T Consensus 16 kNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i~~~k~l~~avh~~G 95 (337)
T d1z41a1 16 KNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQVKEQG 95 (337)
T ss_dssp SSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHHHHHHTT
T ss_pred CCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEccccccccCccccccHHHHHHHHHHHHHhhccc
Confidence 78999999952 4667777777654 8899999975432 1 1 011111 11112345678
Q ss_pred CCEEEEecCCC-----------------------------------HHHHHHHHHHH-cCCCcEEEEecC---------C
Q 013813 158 RPLFVQFCAND-----------------------------------PEILLNAARRV-EPYCDYVDINLG---------C 192 (436)
Q Consensus 158 ~plivQL~g~d-----------------------------------~e~~~~AA~~v-~~g~D~IdLN~G---------C 192 (436)
..+++||+... .++|++||+++ ++|||+||||.+ +
T Consensus 96 ~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlS 175 (337)
T d1z41a1 96 SKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLS 175 (337)
T ss_dssp CEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHC
T ss_pred cccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccCcceeeeecC
Confidence 88999996432 38999999876 569999999975 9
Q ss_pred CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------CCChhhHHHHHHHHHHcCccEEEeccCccccc
Q 013813 193 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 266 (436)
Q Consensus 193 P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~ 266 (436)
|..|.|+|.||+++.++.+++.||+++|++.++.|+.||++. +.+.++.+++++.++++|+|.+.++.......
T Consensus 176 p~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~ 255 (337)
T d1z41a1 176 PLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHA 255 (337)
T ss_dssp TTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCC
T ss_pred CccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCccccccccccccc
Confidence 999999999999999999999999999999999999999886 34678899999999999999999976654322
Q ss_pred -CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 267 -DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 267 -~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
........+++.+.+|+.+++||+++|+|.++++++++|+++.||.|++||+++.||+|..+++.+
T Consensus 256 ~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~~ 322 (337)
T d1z41a1 256 DINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQ 322 (337)
T ss_dssp CCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHH
T ss_pred ccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHHHhh
Confidence 111123567888999999999999999999999999999997799999999999999999998754
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.3e-25 Score=223.07 Aligned_cols=231 Identities=12% Similarity=0.156 Sum_probs=175.6
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHH--hCCCeEEeCcccchh----h-----ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRR--YGAEAAYTPMLHSRI----F-----TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~--~Ga~l~~Temisa~~----l-----~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. .|+.....+.++ .|+++++||.+.... . ..+... ++..-..+..+..
T Consensus 17 kNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~k~l~~~vh~~g~~ 96 (330)
T d1ps9a1 17 KNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGK 96 (330)
T ss_dssp SSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHHHHTTCC
T ss_pred CCCcEeCCCCCCcCCCCCCcHHHHHHHHHHHhCCeEEEEEeeeEEcCCccccCCCcccCCcccccccccceeeeecCCCe
Confidence 78999999953 233333334433 488999999886421 1 111111 1111235667889
Q ss_pred EEEEecCCC----------------------------------HHHHHHHHHHH-cCCCcEEEEecC---------CCch
Q 013813 160 LFVQFCAND----------------------------------PEILLNAARRV-EPYCDYVDINLG---------CPQR 195 (436)
Q Consensus 160 livQL~g~d----------------------------------~e~~~~AA~~v-~~g~D~IdLN~G---------CP~~ 195 (436)
+++||+... .++|++||+++ ++|||+||||.+ ||..
T Consensus 97 i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~ 176 (330)
T d1ps9a1 97 IALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRT 176 (330)
T ss_dssp EEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTT
T ss_pred ehhhhhhcCCccccCcccCCccccccccCCCChhcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhc
Confidence 999997331 38899999876 569999999976 8999
Q ss_pred hhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEecc------CCChhhHHHHHHHHHHcCccEEEeccCcccccC
Q 013813 196 IARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 267 (436)
Q Consensus 196 ~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~ 267 (436)
|.|+|.||+++.++.+++.|||++|++.++ ++|.+|+.. +.+.++..++++.++++|+|.+.++........
T Consensus 177 N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~ 256 (330)
T d1ps9a1 177 NQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARI 256 (330)
T ss_dssp CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSS
T ss_pred ccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccc
Confidence 999999999999999999999999999996 555555533 346788999999999999999988654432211
Q ss_pred -----CCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 268 -----GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 268 -----~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
...........+++|+.+++||+++|+|.++++++++|+++.||.|++||+++.||+|+.+++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~~~G 326 (330)
T d1ps9a1 257 PTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSG 326 (330)
T ss_dssp CSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHTT
T ss_pred cccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHHHcc
Confidence 11112344567889999999999999999999999999997799999999999999999998764
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.91 E-value=7.7e-24 Score=210.97 Aligned_cols=231 Identities=15% Similarity=0.068 Sum_probs=171.2
Q ss_pred CCcEEEccCCCCC--c-----HHHHHHHHHhCCCeEEeCcccchh----hc------cChhh----hhhhhhccCCCCCE
Q 013813 102 RPKLIVAPMVDNS--E-----LPFRMLCRRYGAEAAYTPMLHSRI----FT------ESEKY----RNEEFATCKEDRPL 160 (436)
Q Consensus 102 ~~~i~lAPM~gvt--d-----~~fR~l~~~~Ga~l~~Temisa~~----l~------~~~~~----~~~~~~~~~~e~pl 160 (436)
+|+|++|||.... + ..++....+.|+++++||.+.... .. .++.. ++..-..+..+..+
T Consensus 21 ~NRiv~apm~~~~~~~~~~~~~~~~~~rA~gG~gliite~~~v~~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~g~~i 100 (340)
T d1djqa1 21 RNRFYQVPHAIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALA 100 (340)
T ss_dssp SSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEeCCCCCCCCCCCCHHHHHHHHHHhccCeEEEEEEEEEeccccccCCCCCccccceeecchhhhhHHHhhccccee
Confidence 7899999997432 1 223333345588999999976431 11 11111 11111345678889
Q ss_pred EEEecCCC---------------------------------------HHHHHHHHHHHc-CCCcEEEEecC---------
Q 013813 161 FVQFCAND---------------------------------------PEILLNAARRVE-PYCDYVDINLG--------- 191 (436)
Q Consensus 161 ivQL~g~d---------------------------------------~e~~~~AA~~v~-~g~D~IdLN~G--------- 191 (436)
++||+... .++|++||++++ +|||+||||++
T Consensus 101 ~~Ql~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~ahGyLl~qFl 180 (340)
T d1djqa1 101 GVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFL 180 (340)
T ss_dssp EEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHH
T ss_pred eEeeeeccccccccccCCcccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHhccceeeeeccccchhhhhh
Confidence 99994211 368899998775 59999999976
Q ss_pred CCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccC-------CChhhHHHHHHHHHHcCccEEEeccCc
Q 013813 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVF-------PNLQDTIKYAKMLEDAGCSLLAVHGRT 262 (436)
Q Consensus 192 CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg-------~~~~d~~~~ak~le~aG~d~I~VHgRt 262 (436)
||..|.|+|.||+++.++.+++.||+++|++.++ +||.+|+... .+.+.....+..+++.|+|.+.|+...
T Consensus 181 s~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~ 260 (340)
T d1djqa1 181 NPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGD 260 (340)
T ss_dssp CTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESC
T ss_pred hhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeecc
Confidence 9999999999999999999999999999999994 6777776531 122334455667888999999886543
Q ss_pred cc-------ccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 263 RD-------EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 263 ~~-------~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
.. ..........+++.+.+|+.+++||+++|||.|+++++++|+.+.||+|++||+++.||+|..+++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~~k~~~G 337 (340)
T d1djqa1 261 IAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQG 337 (340)
T ss_dssp STTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHHTT
T ss_pred cccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCccHHHHHHcc
Confidence 21 11111224567888999999999999999999999999999986699999999999999999998764
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.90 E-value=2.9e-23 Score=203.92 Aligned_cols=225 Identities=16% Similarity=0.243 Sum_probs=161.7
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchh-hccCh--------------------------------hh-h
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRI-FTESE--------------------------------KY-R 147 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~-l~~~~--------------------------------~~-~ 147 (436)
++||++|....-.+..+-..+.+.|++.+.+..++... ...+. .. .
T Consensus 11 ~nPi~~Asg~~~~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~ 90 (312)
T d1gtea2 11 INPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWC 90 (312)
T ss_dssp SSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCSSCHHHHH
T ss_pred CCCcEECCcCCCCCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCccccccccccccccccccccchhhhh
Confidence 67888887655555555556667888888877775321 00000 00 0
Q ss_pred h--hhhhc-cCCCCCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 148 N--EEFAT-CKEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 148 ~--~~~~~-~~~e~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
. ..... .+...+++.+..|.+++++.++++.++ .|+|+||||++||+....++ +|..+..+++.+.++++++++.
T Consensus 91 ~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~-~~~~~~~~~~~~~~i~~~v~~~ 169 (312)
T d1gtea2 91 QSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERG-MGLACGQDPELVRNICRWVRQA 169 (312)
T ss_dssp HHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC------SBGGGCHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccc-cchhhhhhHHHHHHHHHHHhhc
Confidence 0 00111 123344555667889999999998775 58999999999999755554 6888999999999999999999
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc--------------------cCCCCCc----cCHHHHH
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------------KDGKKFR----ADWNAIK 279 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~--------------------~~~~~g~----ad~~~i~ 279 (436)
+++||+||++.. ..+..++++.++++|++.|+++++.... ..+.+|+ ..++.++
T Consensus 170 ~~~pv~vKl~~~--~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~ 247 (312)
T d1gtea2 170 VQIPFFAKLTPN--VTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVT 247 (312)
T ss_dssp CSSCEEEEECSC--SSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHH
T ss_pred cCCceeeccccc--chhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHH
Confidence 999999998754 3456788999999999999998764210 0112222 2367888
Q ss_pred HHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhh
Q 013813 280 AVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 330 (436)
Q Consensus 280 ~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~ 330 (436)
.+++.+ ++|||++|||.|.+|+.+++.. |||+||||++++.+ |.++.++.
T Consensus 248 ~~~~~~~~ipIi~~GGI~~~~d~~~~l~a-GA~~Vqv~ta~~~~G~~~i~~i~ 299 (312)
T d1gtea2 248 TIARALPGFPILATGGIDSAESGLQFLHS-GASVLQVCSAVQNQDFTVIQDYC 299 (312)
T ss_dssp HHHHHSTTCCEEEESSCCSHHHHHHHHHT-TCSEEEESHHHHTSCTTHHHHHH
T ss_pred HHHHHcCCCcEEEEcCCCCHHHHHHHHHc-CCCeeEECHhhhccChHHHHHHH
Confidence 999887 6999999999999999999986 99999999999876 77776654
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=99.87 E-value=1e-21 Score=197.18 Aligned_cols=226 Identities=14% Similarity=0.163 Sum_probs=171.8
Q ss_pred CCcEEEccCCC--------C-CcHHHHHHHHHhCCCeEEeCcccchh----hc-----cChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD--------N-SELPFRMLCRRYGAEAAYTPMLHSRI----FT-----ESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g--------v-td~~fR~l~~~~Ga~l~~Temisa~~----l~-----~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. + ++.....+.++.|+++++||.+.... .. .+... +...-..+..+..
T Consensus 16 kNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~~~~~~~~~~~l~~d~~i~~~k~l~~~vh~~G~~ 95 (363)
T d1vyra_ 16 PNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGR 95 (363)
T ss_dssp SSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEccccCCcCCCCCCCCHHHHHHHHHHHcCcCEEEEeeeEECccccCCCCCCccCChhhcccchhhhhhhhhcCCe
Confidence 78999999963 2 33334455556678999999765321 10 01111 1111134567889
Q ss_pred EEEEecCCC------------------------------------------------------HHHHHHHHHHHc-CCCc
Q 013813 160 LFVQFCAND------------------------------------------------------PEILLNAARRVE-PYCD 184 (436)
Q Consensus 160 livQL~g~d------------------------------------------------------~e~~~~AA~~v~-~g~D 184 (436)
+++||+... .++|++||++++ .|||
T Consensus 96 i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~aGfD 175 (363)
T d1vyra_ 96 IAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFD 175 (363)
T ss_dssp EEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHHHHTTCS
T ss_pred eeeeeeccCccccccccCCCcceeecccccccccccccCcccccccCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999995221 358999998774 6999
Q ss_pred EEEEecC---------CCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEecc----------CCChhhHHHH
Q 013813 185 YVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRV----------FPNLQDTIKY 244 (436)
Q Consensus 185 ~IdLN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRl----------g~~~~d~~~~ 244 (436)
+||||++ +|..|.|+|.||+++.++.+++.||+++|++.++ -+|.+++.. +.+.++++++
T Consensus 176 gVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~ 255 (363)
T d1vyra_ 176 LVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYL 255 (363)
T ss_dssp EEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHH
T ss_pred eeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHHH
Confidence 9999964 8999999999999999999999999999999985 357777764 1235678899
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.+++.|+|+|.+....... ..+....+.+.+++.+++||+++|++ |++.++++|+++.||.|.+||+++.||+
T Consensus 256 ~~~l~~~gvd~i~vs~~~~~~----~~~~~~~~~~~~~~~~~~~vi~~G~~-t~~~ae~~l~~G~~DlV~~gR~liadP~ 330 (363)
T d1vyra_ 256 IEELAKRGIAYLHMSETDLAG----GKPYSEAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANPD 330 (363)
T ss_dssp HHHHHHTTCSEEEEECCBTTB----CCCCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHhcCCeeeecccCCccC----CccccHHHHHHHHHhcCceEEecCCC-CHHHHHHHHHCCCcceehhhHHHHHCcc
Confidence 999999999999997554321 11345667788899999999988755 8999999999867999999999999999
Q ss_pred cchhhhhh
Q 013813 325 LFAGFRTA 332 (436)
Q Consensus 325 lf~~i~~~ 332 (436)
|..+++.+
T Consensus 331 ~~~K~~~g 338 (363)
T d1vyra_ 331 LVARLQKK 338 (363)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99998865
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=1.1e-21 Score=197.81 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=169.0
Q ss_pred CCcEEEccCC-------CCCcHHHHHHHHHhCCCeEEeCcccchhh----c-----cChhh----hhhhhhccCCCCCEE
Q 013813 102 RPKLIVAPMV-------DNSELPFRMLCRRYGAEAAYTPMLHSRIF----T-----ESEKY----RNEEFATCKEDRPLF 161 (436)
Q Consensus 102 ~~~i~lAPM~-------gvtd~~fR~l~~~~Ga~l~~Temisa~~l----~-----~~~~~----~~~~~~~~~~e~pli 161 (436)
+|+|++|||. ..|+..+..+.++.++++++||....... . .+... ++..-..+..+..++
T Consensus 20 kNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~G~~i~ 99 (374)
T d1gwja_ 20 PNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIA 99 (374)
T ss_dssp SCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCBTTCCBCSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEcccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEEeEEECCccCCCCCCCccchhhhhhhhhhHHHHHhccCcceE
Confidence 7899999995 35677777777766778999997543211 0 11111 111113456788899
Q ss_pred EEecCCC-------------------------------------------------------HHHHHHHHHHH-cCCCcE
Q 013813 162 VQFCAND-------------------------------------------------------PEILLNAARRV-EPYCDY 185 (436)
Q Consensus 162 vQL~g~d-------------------------------------------------------~e~~~~AA~~v-~~g~D~ 185 (436)
+||+... .++|++||+++ ++|||+
T Consensus 100 ~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDg 179 (374)
T d1gwja_ 100 LQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVEDYRQAAQRAKRAGFDM 179 (374)
T ss_dssp EEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHHHHTTCSE
T ss_pred eeeeccCcccccccCCCCCceeccccccccCccccccccccccccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 9996221 46899999776 569999
Q ss_pred EEEecC---------CCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEecc-----CCC----hhhHHHHHH
Q 013813 186 VDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRV-----FPN----LQDTIKYAK 246 (436)
Q Consensus 186 IdLN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRl-----g~~----~~d~~~~ak 246 (436)
||||++ +|..|.|+|.||+++.++.+++.||+++|+++++ ..|.+++.. +.. ......+++
T Consensus 180 VEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~~~~~~~~~ 259 (374)
T d1gwja_ 180 VEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAG 259 (374)
T ss_dssp EEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHH
T ss_pred EEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchHHHHHHhhc
Confidence 999964 7999999999999999999999999999999985 344444332 111 122345677
Q ss_pred HHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
.++..|++.+.++........ . .....+.+.+++.+++||+++|+| +++.++++|+++.||.|++||+++.||+|.
T Consensus 260 ~ld~~~i~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~iadPd~~ 335 (374)
T d1gwja_ 260 ELDRRGLAYLHFNEPDWIGGD-I--TYPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLP 335 (374)
T ss_dssp HHHHHTCSEEEEECSCBTTBC-C--CCCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred cccccCceEEEeccCcccCCC-c--chhHHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHHCccHH
Confidence 889999999998755432111 1 122234678999999999999999 799999999998899999999999999999
Q ss_pred hhhhhhh
Q 013813 327 AGFRTAE 333 (436)
Q Consensus 327 ~~i~~~~ 333 (436)
.+++.+.
T Consensus 336 ~K~~~G~ 342 (374)
T d1gwja_ 336 ERFRLGA 342 (374)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9998753
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=99.84 E-value=1e-20 Score=189.96 Aligned_cols=228 Identities=16% Similarity=0.111 Sum_probs=162.5
Q ss_pred CCcEEEccCC-------CCCcHHHHHHHHHh-CCCeEEeCccc--chhhc-------cChhh----hhhhhhccCCCCCE
Q 013813 102 RPKLIVAPMV-------DNSELPFRMLCRRY-GAEAAYTPMLH--SRIFT-------ESEKY----RNEEFATCKEDRPL 160 (436)
Q Consensus 102 ~~~i~lAPM~-------gvtd~~fR~l~~~~-Ga~l~~Temis--a~~l~-------~~~~~----~~~~~~~~~~e~pl 160 (436)
+|++++|||. ..++..+..+.++. |.++++||.+. ..... .+.+. +...-..+..+..+
T Consensus 19 kNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~V~~~g~~~~~~~~l~~d~~i~~~k~l~~~ih~~g~~~ 98 (364)
T d1icpa_ 19 CHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIF 98 (364)
T ss_dssp SCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCccEecccCCCcCCCCCCCHHHHHHHHHHHhCceEEEEccEEECCcccCCCCCceechhhhhhhHHHHHHHhhcCCCce
Confidence 7899999996 34666676666544 44799999653 22110 11111 11112345678889
Q ss_pred EEEecCCC--------------------------------------------------HHHHHHHHHHH-cCCCcEEEEe
Q 013813 161 FVQFCAND--------------------------------------------------PEILLNAARRV-EPYCDYVDIN 189 (436)
Q Consensus 161 ivQL~g~d--------------------------------------------------~e~~~~AA~~v-~~g~D~IdLN 189 (436)
++||+... .++|++||+++ ++|||+||||
T Consensus 99 ~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~rA~~AGfDgVeIH 178 (364)
T d1icpa_ 99 FCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIH 178 (364)
T ss_dssp EEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEeeccCCcccccccccCCCCCccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 99996211 48999999876 5699999999
Q ss_pred cC---------CCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccC-------CChhhH--HHHHHHHHH
Q 013813 190 LG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF-------PNLQDT--IKYAKMLED 250 (436)
Q Consensus 190 ~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg-------~~~~d~--~~~ak~le~ 250 (436)
++ +|..|.|+|.||+++.++.+++.||+++|++.++ .+|.+++... .+.++. +.+++.+..
T Consensus 179 ~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~ 258 (364)
T d1icpa_ 179 GAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNK 258 (364)
T ss_dssp ECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGG
T ss_pred ccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHHHHHHHhhc
Confidence 74 8999999999999999999999999999999984 4677776431 222333 344555566
Q ss_pred cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 251 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 251 aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.|++.+.+.......... ....++....+++.++.||+++|++ +++++++++.+++||.|++||+++.||+|..+++
T Consensus 259 ~d~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iadPd~~~k~~ 335 (364)
T d1icpa_ 259 YDLAYCHVVEPRMKTAWE--KIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLPKRFE 335 (364)
T ss_dssp GCCSEEEEECCSCCC--------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred cceeeeeeecCccccccc--ccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHHCccHHHHHH
Confidence 667677665443322111 1222344667888899999999987 7899999999989999999999999999999988
Q ss_pred hh
Q 013813 331 TA 332 (436)
Q Consensus 331 ~~ 332 (436)
.+
T Consensus 336 ~g 337 (364)
T d1icpa_ 336 LN 337 (364)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=99.81 E-value=7.7e-20 Score=185.54 Aligned_cols=232 Identities=14% Similarity=0.126 Sum_probs=158.8
Q ss_pred CCcEEEccCCCC--------C--cHHHHHHHHHh--CCCeEEeCcccch--h--hc-----cChhh----hhhhhhccCC
Q 013813 102 RPKLIVAPMVDN--------S--ELPFRMLCRRY--GAEAAYTPMLHSR--I--FT-----ESEKY----RNEEFATCKE 156 (436)
Q Consensus 102 ~~~i~lAPM~gv--------t--d~~fR~l~~~~--Ga~l~~Temisa~--~--l~-----~~~~~----~~~~~~~~~~ 156 (436)
+|+|++|||... + |...+.+.++. |+++++||.+... . .. .+... +...-..+..
T Consensus 28 kNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~~~~~~~~l~~d~~i~~~k~l~~~vh~~ 107 (399)
T d1oyaa_ 28 LHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEK 107 (399)
T ss_dssp SSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGCCCTTSCBSSSHHHHHHHHHHHHHHHHT
T ss_pred cCccEECCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeccEEECcccCCCCCCCccCCHHHHHHHhHHHHHHHhh
Confidence 789999999752 2 44455565554 6899999975432 1 10 11111 1111134567
Q ss_pred CCCEEEEecCC-------------------------------------------C-------HHHHHHHHHHH-cCCCcE
Q 013813 157 DRPLFVQFCAN-------------------------------------------D-------PEILLNAARRV-EPYCDY 185 (436)
Q Consensus 157 e~plivQL~g~-------------------------------------------d-------~e~~~~AA~~v-~~g~D~ 185 (436)
+..+++||+.. + .++|++||+++ ++|||+
T Consensus 108 Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDg 187 (399)
T d1oyaa_ 108 KSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 187 (399)
T ss_dssp TCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEECCHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred ccccchhhhhhccccCccccccccccccCccccccCCCCCCcccccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhCCce
Confidence 88999999632 0 36888999776 569999
Q ss_pred EEEecC---------CCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCC------C------hhhHHH
Q 013813 186 VDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP------N------LQDTIK 243 (436)
Q Consensus 186 IdLN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~------~------~~d~~~ 243 (436)
||||.+ +|..|.|+|.||+++.++.+++.||+++|++++ ..||.||+.... + ..+..+
T Consensus 188 VEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~~~~~~~~~~~~~~~~~~ 267 (399)
T d1oyaa_ 188 VEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAY 267 (399)
T ss_dssp EEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTHHHHHHH
T ss_pred EehhhhHHHHHHHhhcccccccccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhcccccCCccccchHHHHHH
Confidence 999974 899999999999999999999999999999998 358888875421 1 123445
Q ss_pred HHHHHHHcC-----ccEEEeccCccccc--CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 244 YAKMLEDAG-----CSLLAVHGRTRDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 244 ~ak~le~aG-----~d~I~VHgRt~~~~--~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+++.++..| .+.+.+........ ....+.........+++.+++|||++|+|.+.+++.+.+...+||.|.+|
T Consensus 268 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~g 347 (399)
T d1oyaa_ 268 VAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYG 347 (399)
T ss_dssp HHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECC
T ss_pred HHHHHHHhccccccccceeeecccCCCccccccccccchhHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCCeEhHHH
Confidence 566665544 33443322211110 00111111122345778899999999999987777666666789999999
Q ss_pred hHHhhCCccchhhhhhh
Q 013813 317 ESLLENPALFAGFRTAE 333 (436)
Q Consensus 317 Rgal~nP~lf~~i~~~~ 333 (436)
|+++.||+|..+++.+.
T Consensus 348 R~liaDP~l~~K~~~G~ 364 (399)
T d1oyaa_ 348 RFFISNPDLVDRLEKGL 364 (399)
T ss_dssp HHHHHCTTHHHHHHHTC
T ss_pred HHHHHCccHHHHHHcCC
Confidence 99999999999998754
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.79 E-value=1.8e-18 Score=168.72 Aligned_cols=171 Identities=15% Similarity=0.259 Sum_probs=133.9
Q ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHc-C-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEE
Q 013813 154 CKEDRPLFVQFCANDPEILLNAARRVE-P-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 231 (436)
Q Consensus 154 ~~~e~plivQL~g~d~e~~~~AA~~v~-~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVK 231 (436)
...+.|+++++.|.+.+++...++.++ . ++|+||||++||+... +..+..+++.+.++++++++.+++||.+|
T Consensus 90 ~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~-----~~~~~~~~~~~~~~~~~v~~~~~~pv~vK 164 (311)
T d1juba_ 90 NAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPG-----EPQLAYDFEATEKLLKEVFTFFTKPLGVK 164 (311)
T ss_dssp TCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSS-----CCCGGGCHHHHHHHHHHHTTTCCSCEEEE
T ss_pred cccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccc-----cccccccHHHHHHHHHHhhcccccceeec
Confidence 456789999999999999988887654 3 5899999999998521 23456789999999999999999999999
Q ss_pred eccCCChhhHHHHHHHHHHcCccEEEeccCccc-----------------ccCCCCCc----cCHHHHHHHHhhC--CCc
Q 013813 232 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-----------------EKDGKKFR----ADWNAIKAVKNAL--RIP 288 (436)
Q Consensus 232 iRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~-----------------~~~~~~g~----ad~~~i~~ik~~~--~iP 288 (436)
+....+..+...+++.+.+.|++.++..+.... ...+.+|+ ..++.+.++++.+ ++|
T Consensus 165 l~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~ 244 (311)
T d1juba_ 165 LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQ 244 (311)
T ss_dssp ECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSE
T ss_pred ccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCee
Confidence 887766667777888899999999876542210 00111221 2356677777765 599
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHh-hCCccchhhh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLL-ENPALFAGFR 330 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal-~nP~lf~~i~ 330 (436)
||++|||.|.+|+.+++.. |||.|+++++++ ..|+++.++.
T Consensus 245 Iig~GGI~s~~Da~~~i~a-GA~~Vql~tal~~~Gp~~i~~i~ 286 (311)
T d1juba_ 245 IIGTGGIETGQDAFEHLLC-GATMLQIGTALHKEGPAIFDRII 286 (311)
T ss_dssp EEEESSCCSHHHHHHHHHH-TCSEEEECHHHHHHCTHHHHHHH
T ss_pred EEecCCcCCHHHHHHHHHc-CCCceeeeHhhHhcChHHHHHHH
Confidence 9999999999999999986 999999999985 5588877654
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=99.77 E-value=1e-18 Score=175.93 Aligned_cols=230 Identities=14% Similarity=0.116 Sum_probs=157.5
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh-CCCeEEeCcccc--hh--hc-----cChhh----hhhhhhccCCCCCE
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY-GAEAAYTPMLHS--RI--FT-----ESEKY----RNEEFATCKEDRPL 160 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~-Ga~l~~Temisa--~~--l~-----~~~~~----~~~~~~~~~~e~pl 160 (436)
+|+|++|||.. .|+...+.+.++. |.++++||.+.. .. .. .+.+. +...-..+..+..+
T Consensus 17 kNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Ggglii~~~~~V~~~~~~~~~~~~~~~d~~i~~~k~l~~~vh~~g~~~ 96 (380)
T d1q45a_ 17 SHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVEAWKQVVEAVHAKGGFI 96 (380)
T ss_dssp SCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTTCEEEEEEEESSTTCCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEcccCCCcCCCCCCCHHHHHHHHHHHhCCEEEEEcceEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHhcCcce
Confidence 78999999963 6676666665543 557888887542 11 10 11111 11111345678889
Q ss_pred EEEecCC-----------------------------------------------------CHHHHHHHHHHHc-CCCcEE
Q 013813 161 FVQFCAN-----------------------------------------------------DPEILLNAARRVE-PYCDYV 186 (436)
Q Consensus 161 ivQL~g~-----------------------------------------------------d~e~~~~AA~~v~-~g~D~I 186 (436)
++||+-. -.+.|++||++++ +|||+|
T Consensus 97 ~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~aA~~A~~aGfDgV 176 (380)
T d1q45a_ 97 FCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCLSALNAIRAGFDGI 176 (380)
T ss_dssp EEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred EEEeeeCCccccccccccCCCCcccccCccccCCceeecCCccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 9999520 1478999998775 599999
Q ss_pred EEecC---------CCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEecc------CCC--hh------hH
Q 013813 187 DINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV------FPN--LQ------DT 241 (436)
Q Consensus 187 dLN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRl------g~~--~~------d~ 241 (436)
|||.+ +|..|.|+|.||+++.++.+++.|||++|+++++ .++..++.. +.+ .+ +.
T Consensus 177 EIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 256 (380)
T d1q45a_ 177 EIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVVGM 256 (380)
T ss_dssp EEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHH
T ss_pred eeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeecccccccccccchhhhhhhhhh
Confidence 99964 8999999999999999999999999999999984 333333221 111 11 11
Q ss_pred HHHHHHHHHcCccEEEeccCccccc----CCCCCc--cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFR--ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~----~~~~g~--ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++....+...+++++.+........ .+..++ .....++.+++.+++||+++||+ +++.++++|+.+.||.|.+
T Consensus 257 l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~ 335 (380)
T d1q45a_ 257 LNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NKELGMQAVQQGDADLVSY 335 (380)
T ss_dssp HHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred hhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-CHHHHHHHHHcCCccchhh
Confidence 2233334557788887754322110 111111 12345677888899999999998 6999999999988999999
Q ss_pred ehHHhhCCccchhhhhh
Q 013813 316 AESLLENPALFAGFRTA 332 (436)
Q Consensus 316 GRgal~nP~lf~~i~~~ 332 (436)
||+++.||+|.++++.+
T Consensus 336 gR~liaDPdlv~K~~~g 352 (380)
T d1q45a_ 336 GRLFIANPDLVSRFKID 352 (380)
T ss_dssp SHHHHHCTTHHHHHHTT
T ss_pred hHHHHHCccHHHHHhcC
Confidence 99999999999998754
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.1e-16 Score=158.25 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=126.8
Q ss_pred cCCCCCEEEEecCCC-------HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHH-------
Q 013813 154 CKEDRPLFVQFCAND-------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK------- 219 (436)
Q Consensus 154 ~~~e~plivQL~g~d-------~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~a------- 219 (436)
...+.|+++++.++. .+++..+.+.++.++|++|||++||+.. |...+.+.+.+..++.+
T Consensus 130 ~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~~~ad~iElNiScPN~~------g~~~~~~~~~l~~~~~~~~~~~~~ 203 (336)
T d1f76a_ 130 AHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIKNKQND 203 (336)
T ss_dssp CCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEEeccCCcchHHHHHHHHHHHHHhhcccceeeecccchhhh------cccccccchhhccchhhhhhhhhh
Confidence 356789999999875 5667777788888999999999999852 22233444444443333
Q ss_pred --HhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc-----------ccCCCCCc----cCHHHHHHHH
Q 013813 220 --LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-----------EKDGKKFR----ADWNAIKAVK 282 (436)
Q Consensus 220 --v~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~-----------~~~~~~g~----ad~~~i~~ik 282 (436)
.+....+||.+|+....+..+..+.++.+.+.|++.++....+.. +..+.+|+ ..++.+++++
T Consensus 204 ~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~ 283 (336)
T d1f76a_ 204 LQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLS 283 (336)
T ss_dssp HHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHH
T ss_pred hhhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 233457899999766556668888999999999999987443211 11122222 2456678888
Q ss_pred hhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH-hhCCccchhhhh
Q 013813 283 NAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 331 (436)
Q Consensus 283 ~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga-l~nP~lf~~i~~ 331 (436)
+.+ ++|||+.|||.|.+|+.+++.. ||++|+||+++ +.+|.++.++..
T Consensus 284 ~~~~~~ipIIG~GGI~s~~Da~e~i~a-GAsaVQv~Tal~~~Gp~ii~~I~~ 334 (336)
T d1f76a_ 284 LELNGRLPIIGVGGIDSVIAAREKIAA-GASLVQIYSGFIFKGPPLIKEIVT 334 (336)
T ss_dssp HHHTTSSCEEEESSCCSHHHHHHHHHH-TCSEEEESHHHHHHCHHHHHHHHH
T ss_pred HHcCCCCeEEEECCCCCHHHHHHHHHc-CCcHHHHHHHHHhcChHHHHHHHh
Confidence 776 7999999999999999999997 99999999996 689999998753
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.7e-16 Score=158.63 Aligned_cols=265 Identities=17% Similarity=0.127 Sum_probs=159.0
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHHHH--HHhCCCcEEEccCCCCCcHHHHHH
Q 013813 44 DDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAHW--TKLGRPKLIVAPMVDNSELPFRML 121 (436)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lg~~~i~lAPM~gvtd~~fR~l 121 (436)
...|+.++.| .+=+||+.++|.+..+ ....+..++.+|++. +++ ..-|-.+...+. +
T Consensus 47 ~~~L~v~~~G------------l~~~nPi~lAsG~~~~-~~~i~~~~~~G~G~vv~kTi-----t~~~~~gn~~pr---~ 105 (367)
T d1d3ga_ 47 SDMLEVRVLG------------HKFRNPVGIAAGFDKH-GEAVDGLYKMGFGFVEIGSV-----TPKPQEGNPRPR---V 105 (367)
T ss_dssp CGGGCEEETT------------EEESSSEEECTTSSTT-SSSHHHHHHHTCSEEEEEEE-----CSSCBCCSCSCC---E
T ss_pred CCCCceEECC------------EecCCCcEeCcCCCCC-HHHHHHHhhcCCcEEeeccc-----cccccccCCchh---h
Confidence 5678999999 8999999998754322 233444444444432 222 123333333221 1
Q ss_pred HHH-hCCCeEEeCcccchhh---ccChhhh-hhhhhccCCCCCEEEEecCCC-----HHHHHHHHHHHcCCCcEEEEecC
Q 013813 122 CRR-YGAEAAYTPMLHSRIF---TESEKYR-NEEFATCKEDRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLG 191 (436)
Q Consensus 122 ~~~-~Ga~l~~Temisa~~l---~~~~~~~-~~~~~~~~~e~plivQL~g~d-----~e~~~~AA~~v~~g~D~IdLN~G 191 (436)
.+. .+..+....-+..... ..+.... ...-.....+.|+++++.++. .+++..+.+.++.++|+++||++
T Consensus 106 ~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiS 185 (367)
T d1d3ga_ 106 FRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVS 185 (367)
T ss_dssp EEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESC
T ss_pred hhhccccccccccCcCCcchHHHHHHHHHHhhhcccccccCceEEEEeccccccHHHHHHHHHHHHHhhhcccccccccc
Confidence 111 1112233322222211 1110000 000111235679999999863 35666666777889999999999
Q ss_pred CCchhhhcC-cccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc-----
Q 013813 192 CPQRIARRG-NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----- 265 (436)
Q Consensus 192 CP~~~~~~~-~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~----- 265 (436)
||+....++ .....+......+.+....++...++||.+|+....+..+..++++.+.++|+++|++...+...
T Consensus 186 cPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~ 265 (367)
T d1d3ga_ 186 SPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQ 265 (367)
T ss_dssp CTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCC
T ss_pred cccccccccccccchhhhHHHHHHHhhhhcccccCCccccccCcccchhhhhhhHHHHHhhhhheeeccccccccccccc
Confidence 999632111 11111111111222222223334578999998776667788899999999999999885443211
Q ss_pred ------cCCCCC----ccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH-hhCCccchhhh
Q 013813 266 ------KDGKKF----RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFR 330 (436)
Q Consensus 266 ------~~~~~g----~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga-l~nP~lf~~i~ 330 (436)
..+.+| +.....++.+++.+ ++|||++|||.|++|+.+++.. |||.|+||+++ +.+|.++.++.
T Consensus 266 ~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~a-GAs~VQi~Ta~~~~Gp~ii~~I~ 342 (367)
T d1d3ga_ 266 GALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRA-GASLVQLYTALTFWGPPVVGKVK 342 (367)
T ss_dssp CTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHH-TCSEEEESHHHHHHCTHHHHHHH
T ss_pred ccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHc-CCCHHHhhHHHHhcCcHHHHHHH
Confidence 011112 23456677777765 6999999999999999999997 99999999996 68999998765
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.71 E-value=2e-16 Score=154.63 Aligned_cols=170 Identities=16% Similarity=0.220 Sum_probs=124.0
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHH----HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE
Q 013813 155 KEDRPLFVQFCANDPEILLNAARR----VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~~----v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV 230 (436)
..+.|+++++.|.+.+++.+.++. .++++|+||||++||+... +..+..+++.+.++++++++.+++|+.+
T Consensus 89 ~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~~-----~~~~~~~~~~~~~i~~~v~~~~~~pi~v 163 (312)
T d2b4ga1 89 YSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVPG-----KPQVGYDFDTTRTYLQKVSEAYGLPFGV 163 (312)
T ss_dssp TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTT-----CCCGGGCHHHHHHHHHHHHHHHCSCEEE
T ss_pred ccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcCc-----chhhhccHHHHHHHHHHhhcccccccee
Confidence 356899999999998888777753 3457999999999998521 2345678999999999999999999999
Q ss_pred EeccCCChhhHHHHHHHHHHcC-ccEEEeccCcc-----------------cccCCCCCcc----CHHHHHHHHhhC-CC
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTR-----------------DEKDGKKFRA----DWNAIKAVKNAL-RI 287 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG-~d~I~VHgRt~-----------------~~~~~~~g~a----d~~~i~~ik~~~-~i 287 (436)
|+-...+..+....+..+.+.+ ++.+....... .+..+.+|++ .++.+..+++.+ +.
T Consensus 164 Kl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~~~ 243 (312)
T d2b4ga1 164 KMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDK 243 (312)
T ss_dssp EECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCTTS
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcCCC
Confidence 9766555444444445554444 44443321100 0012233332 467777777765 67
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHh-hCCccchhhh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLL-ENPALFAGFR 330 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal-~nP~lf~~i~ 330 (436)
||+++|||.|++|+.+++.. ||+.|+++++++ ..|.++.++.
T Consensus 244 ~Iig~GGI~s~~Da~e~i~a-GAs~Vqv~Tal~~~Gp~~i~~i~ 286 (312)
T d2b4ga1 244 LVFGCGGVYSGEEAFLHILA-GASMVQVGTALHDEGPIIFARLN 286 (312)
T ss_dssp EEEEESSCCSHHHHHHHHHH-TEEEEEESHHHHHHCTTHHHHHH
T ss_pred ceeecCCcCCHHHHHHHHHc-CCChheeehhhHhcCcHHHHHHH
Confidence 89999999999999999997 999999999975 5699998765
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.67 E-value=8.3e-16 Score=155.99 Aligned_cols=167 Identities=17% Similarity=0.170 Sum_probs=127.0
Q ss_pred CCCEEEEecCCC-----HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-------
Q 013813 157 DRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL------- 224 (436)
Q Consensus 157 e~plivQL~g~d-----~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~------- 224 (436)
..++.+++..+. .+++..+.+.+.+++|+++||.+||+.. |..-+++++.+.++++++++..
T Consensus 148 ~~i~gi~~~~~~~~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~------glr~~~~~~~L~~ll~~v~~~~~~~~~~~ 221 (409)
T d1tv5a1 148 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNN 221 (409)
T ss_dssp TCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHHHC---
T ss_pred ccccccccccccchhHHHHHHHHHHHHHhhcccceeecccccccc------ccccccCHHHHHHHHHHHHHHHHhhhccc
Confidence 344556665542 2444444456667899999999999962 4445678999999999886532
Q ss_pred --------------------------------------------CccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc
Q 013813 225 --------------------------------------------NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG 260 (436)
Q Consensus 225 --------------------------------------------~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg 260 (436)
..||.||+....+.++..++++.+.+.|+|+|++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~N 301 (409)
T d1tv5a1 222 IMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISN 301 (409)
T ss_dssp -----------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ccccccccccchhhhhhccccccccccccccchhhhhhccccccCCceEEEeCCCCCchhhHHHHHHHHhccccceeccc
Confidence 238999987766777889999999999999999976
Q ss_pred Ccccc---------cCCCCCc----cCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH-hhCCc
Q 013813 261 RTRDE---------KDGKKFR----ADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPA 324 (436)
Q Consensus 261 Rt~~~---------~~~~~g~----ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga-l~nP~ 324 (436)
.+... ..+.+|+ .....++++++.+ ++|||++|||.|++||.+++.. ||+.|+||+|+ +..|.
T Consensus 302 t~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~A-GAs~VQv~T~li~~Gp~ 380 (409)
T d1tv5a1 302 TTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEA-GASVCQLYSCLVFNGMK 380 (409)
T ss_dssp CBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHT-TEEEEEESHHHHHHGGG
T ss_pred ccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHc-CCCHHhhhhHHHhcChH
Confidence 54321 1122222 3567788888887 4999999999999999999997 99999999997 56699
Q ss_pred cchhhh
Q 013813 325 LFAGFR 330 (436)
Q Consensus 325 lf~~i~ 330 (436)
++.++.
T Consensus 381 ~v~~I~ 386 (409)
T d1tv5a1 381 SAVQIK 386 (409)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998775
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.21 E-value=4.2e-10 Score=109.41 Aligned_cols=205 Identities=16% Similarity=0.144 Sum_probs=118.9
Q ss_pred CCcEEEccCCCCCc-------HHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCC-HHHHH
Q 013813 102 RPKLIVAPMVDNSE-------LPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAND-PEILL 173 (436)
Q Consensus 102 ~~~i~lAPM~gvtd-------~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d-~e~~~ 173 (436)
+.||++|||.+.+. ...-+.+.+.|.-.+.+++-+.... ..................+++++.... .+...
T Consensus 35 ~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (329)
T d1p0ka_ 35 SSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKD-PSERLSYEIVRKENPNGLIFANLGSEATAAQAK 113 (329)
T ss_dssp SCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTC-HHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHH
T ss_pred CCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchh-HHHHhhhhhHhhhCCcceEEEeeccchhHHHHH
Confidence 45899999977652 2333445566665555544322111 000111111222234556666665544 33332
Q ss_pred HHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-CChhhHHHHHHHHHHc
Q 013813 174 NAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDA 251 (436)
Q Consensus 174 ~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-~~~~d~~~~ak~le~a 251 (436)
+.++ .+++++.+|..||+......+ ..+...+.+.++++++..+.|+.+|.=.. .+ .+.++.+.++
T Consensus 114 ---~~~~~~g~~ai~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~----~~~a~~~~~~ 181 (329)
T d1p0ka_ 114 ---EAVEMIGANALQIHLNVIQEIVMPEG-----DRSFSGALKRIEQICSRVSVPVIVKEVGFGMS----KASAGKLYEA 181 (329)
T ss_dssp ---HHHHHTTCSEEEEEECTTTTC-------------CTTHHHHHHHHHHHCSSCEEEEEESSCCC----HHHHHHHHHH
T ss_pred ---HHHHHcCCCEEEecccccchhhhccc-----cccccchHHHHHHHHHHcCCCcEEEecCCcch----HHHHHHHHhc
Confidence 3333 488999999999985443332 12233455667788888889999995322 23 2345567789
Q ss_pred CccEEEeccC---ccccc-----------CCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 252 GCSLLAVHGR---TRDEK-----------DGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 252 G~d~I~VHgR---t~~~~-----------~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
|+|+|.|.+. +.... ....+.+....+.++.... ++|||+.|||++..|+.++|.. |||+||+|
T Consensus 182 GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KAlal-GAdaV~iG 260 (329)
T d1p0ka_ 182 GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIAL-GASCTGMA 260 (329)
T ss_dssp TCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEEC
T ss_pred CCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHHHHHHc-CCCchhcc
Confidence 9999998432 21100 0011123344455555543 7999999999999999999986 99999999
Q ss_pred hHHh
Q 013813 317 ESLL 320 (436)
Q Consensus 317 Rgal 320 (436)
|.++
T Consensus 261 r~~l 264 (329)
T d1p0ka_ 261 GHFL 264 (329)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9765
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.19 E-value=2.8e-11 Score=110.45 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=63.8
Q ss_pred HHHHHHHHcCccEEEeccCcccc--cCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDE--KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~--~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
+.+..+.+.|+|+|.++++.... ........+|+.+.++++.+++||+++|||.|.+|+.++++. |||+||||+++
T Consensus 130 ~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~-GAdgV~iGsAi- 207 (222)
T d1y0ea_ 130 EEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDL-GVHCSVVGGAI- 207 (222)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHT-TCSEEEECHHH-
T ss_pred HHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEchhh-
Confidence 33566789999999775443221 112222456899999999999999999999999999999985 99999999965
Q ss_pred hCCccch
Q 013813 321 ENPALFA 327 (436)
Q Consensus 321 ~nP~lf~ 327 (436)
.+|+.+.
T Consensus 208 ~rp~~~~ 214 (222)
T d1y0ea_ 208 TRPKEIT 214 (222)
T ss_dssp HCHHHHH
T ss_pred cCHHHHH
Confidence 5777653
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.11 E-value=1.9e-10 Score=105.62 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=62.3
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+.++.+.++|+|+|.++++...+.........+. +..++...++||+++|||+|++|+.++++. |||+||||+++. +
T Consensus 141 ~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ipvia~GGI~t~~d~~~al~~-GAd~V~vGsAi~-~ 217 (230)
T d1yxya1 141 DEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVA-LIEALCKAGIAVIAEGKIHSPEEAKKINDL-GVAGIVVGGAIT-R 217 (230)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHH-HHHHHHHTTCCEEEESCCCSHHHHHHHHTT-CCSEEEECHHHH-C
T ss_pred HHHHHHHhcCCCEEEeecccccccccccchHHHH-HHHHHhcCCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEChhhc-C
Confidence 4467788999999999988776544333344454 556666789999999999999999999985 999999999764 5
Q ss_pred Cc
Q 013813 323 PA 324 (436)
Q Consensus 323 P~ 324 (436)
|.
T Consensus 218 p~ 219 (230)
T d1yxya1 218 PK 219 (230)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=99.06 E-value=1.4e-09 Score=104.20 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=117.4
Q ss_pred CCcEEEccCCCCCcHHHH------HHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHH-----
Q 013813 102 RPKLIVAPMVDNSELPFR------MLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPE----- 170 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR------~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e----- 170 (436)
+.||++|||.+.+..+.. +.+.+.|...+..+.-.. .......... .+.....+.++.+|+......
T Consensus 36 ~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (310)
T d1vcfa1 36 KAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL-LERPEALRSF-RVRKVAPKALLIANLGLAQLRRYGRD 113 (310)
T ss_dssp SSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH-HHCTTTHHHH-CCTTTCSSSCEEEEEEGGGGGTCCHH
T ss_pred CCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhc-chhhhhhccc-chHHhcCCcceeeeecccchhhhhHH
Confidence 568999999887654432 345566654443332111 1111111111 122334567888998876433
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED 250 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~ 250 (436)
...++.+.. +++++.+|..||......+.. ......++... ....+.|+.+|.-.+.. ..+.++.+.+
T Consensus 114 ~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~p~~~k~v~~~~---~~e~a~~~~~ 181 (310)
T d1vcfa1 114 DLLRLVEML--EADALAFHVNPLQEAVQRGDT------DFRGLVERLAE-LLPLPFPVMVKEVGHGL---SREAALALRD 181 (310)
T ss_dssp HHHHHHHHH--TCSEEEEECCHHHHHHTTSCC------CCTTHHHHHHH-HCSCSSCEEEECSSSCC---CHHHHHHHTT
T ss_pred HHHHHHHhc--CCCeeccccccchhhhccccc------ccccHHHHHHH-HhhccCCceeeeecCcc---cHHHHHHHHH
Confidence 333332222 578899999988754433211 11112233333 33457899999533221 1345778889
Q ss_pred cCccEEEeccCcccc-------cC---------CCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 251 AGCSLLAVHGRTRDE-------KD---------GKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 251 aG~d~I~VHgRt~~~-------~~---------~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+|++.|.|.++-..+ .. ...+....+.+..+++. .++|||+.|||++..|+.++|.. |||+|
T Consensus 182 aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~KALal-GAdaV 260 (310)
T d1vcfa1 182 LPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALAL-GADLL 260 (310)
T ss_dssp SCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHH-TCSEE
T ss_pred cCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHHHHHHHh-CCCEe
Confidence 999999985432110 00 00112223455566555 37999999999999999999986 99999
Q ss_pred eeehHHhh
Q 013813 314 LSAESLLE 321 (436)
Q Consensus 314 mIGRgal~ 321 (436)
||||+++.
T Consensus 261 ~iGr~~l~ 268 (310)
T d1vcfa1 261 AVARPLLR 268 (310)
T ss_dssp EECGGGHH
T ss_pred eEhHHHHH
Confidence 99998764
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=6.3e-09 Score=102.36 Aligned_cols=202 Identities=16% Similarity=0.145 Sum_probs=127.2
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCH-HHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDP-EILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~-e~~~~ 174 (436)
+.||+++||.+.+ +...-+.++++|.....+.+-+. ..+. +.....+.+...|+..... +...+
T Consensus 69 ~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~-----~~e~----v~~~~~~~~~~~ql~~~~~~~~~~~ 139 (349)
T d1tb3a1 69 SAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASY-----SLED----IVAAAPEGFRWFQLYMKSDWDFNKQ 139 (349)
T ss_dssp SSSEEECCCSCGGGTCTTTHHHHHHHHHHHTCCEEECTTCSS-----CHHH----HHHHSTTCCEEEECCCCSCTTHHHH
T ss_pred cceEEEcchhcccccccchhhHHHHhhhhcccceeecccccc-----cchh----hhhhccCCCeeeeeecccCHHHHHH
Confidence 5689999999754 45666777778776655443211 1111 1111346788999987654 34444
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhhc---Cccc----------------------ccccCChHHHHHHHHHHhcccCcc
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IARR---GNYG----------------------AFLMDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~~---~~~G----------------------s~Ll~~p~~v~eIv~av~~~~~iP 227 (436)
..+.++ .|+..+-+....|.. +..+ .++. ..-..++...-+-+.++++..+.|
T Consensus 140 ~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~p 219 (349)
T d1tb3a1 140 MVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLP 219 (349)
T ss_dssp HHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHHHHHHTTCCSC
T ss_pred HHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCHHHHHHHHHhcCCC
Confidence 445554 488888777665541 1100 0000 000001111235677888889999
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l 305 (436)
+.+|--. +.+ -+..+.++|+|+|.|.+.-..+... .+.-.+.+.++++.+ ++|||+.|||++..|+.++|
T Consensus 220 ii~Kgi~--~~~----da~~a~~~G~d~i~vsnhggr~~d~--~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KAL 291 (349)
T d1tb3a1 220 IILKGIL--TKE----DAELAMKHNVQGIVVSNHGGRQLDE--VSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKAL 291 (349)
T ss_dssp EEEEEEC--SHH----HHHHHHHTTCSEEEECCGGGTSSCS--BCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH
T ss_pred cccchhh--hhH----HHHHHHHhhccceeeeccccccccc--cccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHH
Confidence 9999433 222 3566789999999984332222112 244567788888765 68999999999999999999
Q ss_pred HhcCcceeeeehHHhh
Q 013813 306 EETGCEGVLSAESLLE 321 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~ 321 (436)
.. |||+|+|||++|.
T Consensus 292 AL-GA~~V~igrp~L~ 306 (349)
T d1tb3a1 292 AL-GARCIFLGRPILW 306 (349)
T ss_dssp HT-TCSCEEESHHHHH
T ss_pred Hc-CCCEEEEChHHHH
Confidence 97 9999999999874
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.93 E-value=1.9e-09 Score=105.18 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=117.0
Q ss_pred CCCEEEEecCC--CHHH--------HHHHHHHHcCCCcEEEEecC---CCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 157 DRPLFVQFCAN--DPEI--------LLNAARRVEPYCDYVDINLG---CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 157 e~plivQL~g~--d~e~--------~~~AA~~v~~g~D~IdLN~G---CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
+..+=+|++|. +.++ +.+|.+++..|+|-|-||-. .|..... =+.+..+|.++.++++.....
T Consensus 93 ~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~~p~~~~e----~~~~~~n~~li~~i~~~fGsq 168 (323)
T d1jvna1 93 TVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYE----LGNRGDGTSPIETISKAYGAQ 168 (323)
T ss_dssp TCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH----TTSCCCSCSHHHHHHHHHCGG
T ss_pred ccceeEEEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhhChHHHHH----HHhhcccchhHHHHHHHhCCc
Confidence 44455777775 3322 56777888999999999832 1111000 011235777888888887543
Q ss_pred -cCccEEEEec-------------------------------c-CCC---hhhHHHHHHHHHHcCccEEEeccCcccccC
Q 013813 224 -LNVPVSCKIR-------------------------------V-FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 267 (436)
Q Consensus 224 -~~iPVsVKiR-------------------------------l-g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~ 267 (436)
+-+-+-+|-. . |+. .-+..++++.+++.|+..|.++...++++.
T Consensus 169 ~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDGt~ 248 (323)
T d1jvna1 169 AVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSN 248 (323)
T ss_dssp GEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTC
T ss_pred eEEEEEEEEeccccccccccccccccccccCCCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEeecccccc
Confidence 2222222211 0 111 126789999999999999999999998765
Q ss_pred CCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 268 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 268 ~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
. .+|+++++++++.+++|||++||+.+.+|+.+++..++++||++|+.++.+-.-+.
T Consensus 249 ~---G~D~el~~~i~~~~~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~~~si~ 305 (323)
T d1jvna1 249 S---GYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVN 305 (323)
T ss_dssp S---CCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHH
T ss_pred c---ccchhHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcCCCCHH
Confidence 4 58999999999999999999999999999999999889999999999876444333
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=98.92 E-value=1.1e-08 Score=100.11 Aligned_cols=194 Identities=18% Similarity=0.183 Sum_probs=122.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
+-||+.|||..+++..+-....++|.-.++.-..+....... ....+ ....++.+.+ |-+++.+..+..++++
T Consensus 37 ~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r~~~~e~~~~~----i~~vk--~~~~~v~~~v-gv~~~~~e~~~~li~a 109 (330)
T d1vrda1 37 NIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQARQ----VSIVK--KTRLLVGAAV-GTSPETMERVEKLVKA 109 (330)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHHHH----HHHHH--TCCBCCEEEE-CSSTTHHHHHHHHHHT
T ss_pred CCCEEeCCCCCcCCHHHHHHHHHCCCeEEeecccchhhhHHH----HHHHh--hhccEEEEEE-ecCHHHHHHHHHHHHC
Confidence 349999999999999887777777663343322211111110 01111 2233455555 4455666666677888
Q ss_pred CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc
Q 013813 182 YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG 260 (436)
Q Consensus 182 g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg 260 (436)
|+|.|-|..+ . ..++.+.+.++.+++.. ++||.+.-= -+.+.++.|.++|+|.|.| |
T Consensus 110 gvd~ivId~A--------~-------G~~~~~~~~ik~ik~~~~~~~viaGnV------~t~~~a~~l~~~GaD~v~V-G 167 (330)
T d1vrda1 110 GVDVIVIDTA--------H-------GHSRRVIETLEMIKADYPDLPVVAGNV------ATPEGTEALIKAGADAVKV-G 167 (330)
T ss_dssp TCSEEEECCS--------C-------CSSHHHHHHHHHHHHHCTTSCEEEEEE------CSHHHHHHHHHTTCSEEEE-C
T ss_pred CCCEEEEecC--------C-------CCchhHHHHHHHHHHhCCCCCEEeech------hHHHHHHHHHHcCCCEEee-c
Confidence 9998766421 1 13455667777777654 688888721 1234577788999999988 2
Q ss_pred Cccc----cc-CCCCCccCHHHHH---HHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 261 RTRD----EK-DGKKFRADWNAIK---AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 261 Rt~~----~~-~~~~g~ad~~~i~---~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.... .+ ..+.+.+.+..+. .+++..++|||+.|||.+..|+.++|.. |||+||+|+-+..-.+-
T Consensus 168 ig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~-GAd~Vm~Gs~fa~~~E~ 239 (330)
T d1vrda1 168 VGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAA-GAESVMVGSIFAGTEEA 239 (330)
T ss_dssp SSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHT-TCSEEEESHHHHTBTTS
T ss_pred cccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCcccCCchheeeec-cCceeeecchheeeccc
Confidence 2111 00 0111233444444 4455678999999999999999999996 99999999988775553
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.85 E-value=2.2e-08 Score=94.02 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=113.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc----
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV---- 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl---- 234 (436)
+-+|+.|. .....++-+.+..|++-|-|| +.+.++|+++.++.+...... -.-+.+|.+.
T Consensus 75 ~pi~vgGG-Irs~e~~~~ll~~Ga~kVii~--------------s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~ 139 (251)
T d1ka9f_ 75 IPLTVGGG-VRSLEDARKLLLSGADKVSVN--------------SAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPE 139 (251)
T ss_dssp SCEEEESS-CCSHHHHHHHHHHTCSEEEEC--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEE
T ss_pred cchheecc-ccCHHHHHHHHHcCCCEEEEC--------------chhhhCHHHHHHHHHhhcccccccccchhhcccceE
Confidence 44666553 333445556677899988776 556789999999999885443 2233344322
Q ss_pred ----CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 235 ----FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 235 ----g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
+|. .-+..++++.+++.|+..|.++.-.++++.. .+|++.++++++..++|++++|||.+.+|+.++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~---G~d~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~~ 216 (251)
T d1ka9f_ 140 VHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKE---GYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQA 216 (251)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCS---CCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHT
T ss_pred EEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccC---CcchhHHHHHHhhcceeEEEecCCCCHHHHHHHHHC
Confidence 332 1267789999999999999999888876544 478999999999999999999999999999999985
Q ss_pred cCcceeeeehHHhhCCccchhh
Q 013813 308 TGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 308 tGaDgVmIGRgal~nP~lf~~i 329 (436)
|++||++|++++.+-.-+.++
T Consensus 217 -g~~gviig~al~~g~~~~~~~ 237 (251)
T d1ka9f_ 217 -GAEAALAASVFHFGEIPIPKL 237 (251)
T ss_dssp -TCSEEEESHHHHTTSSCHHHH
T ss_pred -CCCEEEEhHHHHcCCCCHHHH
Confidence 999999999987655444433
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.82 E-value=6.1e-09 Score=97.12 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=108.1
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl----- 234 (436)
+=+|+.|. ...+.++.+++..|+|-|-+| +.+.++|+++.++.+.....+ -|++..+-
T Consensus 75 ~pi~vGGG-Irs~~~~~~ll~~Ga~kVvi~--------------s~~~~~~~~~~~~~~~~g~~~--vv~~d~~~~~~~~ 137 (239)
T d1vzwa1 75 IKVELSGG-IRDDDTLAAALATGCTRVNLG--------------TAALETPEWVAKVIAEHGDKI--AVGLDVRGTTLRG 137 (239)
T ss_dssp SEEEEESS-CCSHHHHHHHHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGE--EEEEEEETTEECC
T ss_pred cceEeecc-cccchhhhhhhccccccchhh--------------HHhhhccccchhhhccCCcee--eeeeccceeeecC
Confidence 44777664 333455566778899988876 456788999999999887653 33333333
Q ss_pred -CC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHH--HHhcC
Q 013813 235 -FP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC--LEETG 309 (436)
Q Consensus 235 -g~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~--l~~tG 309 (436)
|+ ...+..++.+.+.+.|+..|.++.-.++++.. .+|++.++.+.+..++||+++|||.+.+|++++ +...|
T Consensus 138 ~g~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~---G~d~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g 214 (239)
T d1vzwa1 138 RGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQ---GPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAG 214 (239)
T ss_dssp SSSCCCCCBHHHHHHHHHHTTCCCEEEEEC----------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGT
T ss_pred ccceeeccccchhhhhhhhccccEEEEEeecccceec---CCcchhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCC
Confidence 22 22355678888999999999999888876544 479999999999999999999999999999987 44569
Q ss_pred cceeeeehHHhhCCccchh
Q 013813 310 CEGVLSAESLLENPALFAG 328 (436)
Q Consensus 310 aDgVmIGRgal~nP~lf~~ 328 (436)
++||.+|++++.+--=+.+
T Consensus 215 ~~gvivg~al~~g~i~~~e 233 (239)
T d1vzwa1 215 VEGAIVGKALYAKAFTLEE 233 (239)
T ss_dssp EEEEEECHHHHTTSSCHHH
T ss_pred ccEeeEhHHHHCCCCCHHH
Confidence 9999999998876544443
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.80 E-value=4.6e-08 Score=97.22 Aligned_cols=200 Identities=16% Similarity=0.091 Sum_probs=120.3
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhh----hhhcc--CCCCCEEEEecCCCHHHHHHH
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNE----EFATC--KEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~----~~~~~--~~e~plivQL~g~d~e~~~~A 175 (436)
+-||+.|||.++++..+-....++|.=.+..-..+.+.........+. .+... .....+.+.+. -..++...+
T Consensus 46 ~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg-~~~~~~~~~ 124 (378)
T d1jr1a1 46 KTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIG-THEDDKYRL 124 (378)
T ss_dssp SSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEEC-SSTHHHHHH
T ss_pred CCCEEECCCCCcCCHHHHHHHHHCCCeeEEcCCCCHHHHHHHHheehhhhhCcccccccccCEEEEEEec-cCHHHHHHH
Confidence 459999999999999998877777753333222222111110000000 00000 11222344443 334555555
Q ss_pred HHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCcc
Q 013813 176 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 176 A~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d 254 (436)
..++++|+|.|-+...-++ .+.+.+.++.+++.. ++||.+.- . -+.+-++.|.++|+|
T Consensus 125 ~~l~~agv~vi~id~a~g~---------------~~~~~~~i~~ik~~~~~~~iIaGn-----V-aT~e~a~~L~~aGAD 183 (378)
T d1jr1a1 125 DLLALAGVDVVVLDSSQGN---------------SIFQINMIKYMKEKYPNLQVIGGN-----V-VTAAQAKNLIDAGVD 183 (378)
T ss_dssp HHHHHHTCCEEEECCSSCC---------------SHHHHHHHHHHHHHSTTCEEEEEE-----E-CSHHHHHHHHHHTCS
T ss_pred HHHHhhccceEeeeccCcc---------------chhhHHHHHHHHHHCCCCceeecc-----c-ccHHHHHHHHHhCCC
Confidence 5566779999888754222 245666777777654 67776651 1 123457778899999
Q ss_pred EEEeccCccccc----CCCCCccCHHHHHH---HHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 255 LLAVHGRTRDEK----DGKKFRADWNAIKA---VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 255 ~I~VHgRt~~~~----~~~~g~ad~~~i~~---ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.|.|-......- ..+.|.+.+..+.. +++..++|||+.|||.+..|+.++|.. |||+||+|+.+..-.+
T Consensus 184 ~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~-GAd~VMmGs~fAgt~E 259 (378)
T d1jr1a1 184 ALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALAL-GASTVMMGSLLAATTE 259 (378)
T ss_dssp EEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTBTT
T ss_pred EEeeccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEe-ecceeeecceeeeeec
Confidence 998843322110 00112344444444 445568999999999999999999986 9999999998765444
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.74 E-value=2.8e-08 Score=93.46 Aligned_cols=144 Identities=24% Similarity=0.264 Sum_probs=107.9
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEecc------
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV------ 234 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRl------ 234 (436)
+|++|. ...+.++-+++..|++-|-+| +.+..+|+++.++.+..... +-+.+.+|..-
T Consensus 79 i~~gGG-Ir~~e~~~~ll~~G~~kVii~--------------s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~ 143 (252)
T d1h5ya_ 79 VLVGGG-VRSLEDATTLFRAGADKVSVN--------------TAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVY 143 (252)
T ss_dssp EEEESS-CCSHHHHHHHHHHTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEE
T ss_pred ceeecc-cchhhhhhhHhhcCCcEEEec--------------ccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEE
Confidence 555553 222334445566799988765 55678899999999988543 33344444221
Q ss_pred --CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 235 --FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 235 --g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tG 309 (436)
+|. .-+..++++.+++.|+..|.++...++++.. .+|++.++++++..++||+++|||.+.+|++++.+ .|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~---G~d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~~-~g 219 (252)
T d1h5ya_ 144 VKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGL---GYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAA-AG 219 (252)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCS---CCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TT
T ss_pred EeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccC---CcCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CC
Confidence 232 1256789999999999999999888876543 47999999999999999999999999999999776 59
Q ss_pred cceeeeehHHhhCCc
Q 013813 310 CEGVLSAESLLENPA 324 (436)
Q Consensus 310 aDgVmIGRgal~nP~ 324 (436)
++||.+|++++.+--
T Consensus 220 ~~gv~~gs~l~~~~~ 234 (252)
T d1h5ya_ 220 ADAVLAASLFHFRVL 234 (252)
T ss_dssp CSEEEESHHHHTTSS
T ss_pred CCEEEEhhHHHcCCC
Confidence 999999998875443
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.73 E-value=2.8e-08 Score=93.39 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=110.6
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEec-------
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR------- 233 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiR------- 233 (436)
+|++| ....+.++.+.+..|++-|-|| +.+.++|+++.++++.+.... -..+.++..
T Consensus 77 i~vgG-GIr~~e~i~~~l~~Ga~kviig--------------s~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~ 141 (253)
T d1thfd_ 77 FTVGG-GIHDFETASELILRGADKVSIN--------------TAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVF 141 (253)
T ss_dssp EEEES-SCCSHHHHHHHHHTTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred ceeec-ccccchhhhhHHhcCCCEEEEC--------------hHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeee
Confidence 56644 3444556666788899988775 567789999999999985442 222222210
Q ss_pred c-CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 234 V-FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 234 l-g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tG 309 (436)
. +|. ..+..++++.+++.|+..|.++.-.++++.. ..|++.++.+++..++||+++|||.+.+|+.++++. |
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~---G~d~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~~-g 217 (253)
T d1thfd_ 142 TYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLA-G 217 (253)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCS---CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHT-T
T ss_pred eeecccccchhHHHHHHHHHhccCCEEEEEEecccCccC---CccccccccccccccceEEEecCCCCHHHHHHHHHC-C
Confidence 0 121 2356788999999999999999888876544 479999999999999999999999999999999875 9
Q ss_pred cceeeeehHHhhCCccch
Q 013813 310 CEGVLSAESLLENPALFA 327 (436)
Q Consensus 310 aDgVmIGRgal~nP~lf~ 327 (436)
+++|.+|++++.+---+.
T Consensus 218 ~~gvivgsal~~~~~~~~ 235 (253)
T d1thfd_ 218 ADAALAASVFHFREIDVR 235 (253)
T ss_dssp CSEEEESHHHHTTCSCHH
T ss_pred CCEEEEchHHHcCCCCHH
Confidence 999999999876544333
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.68 E-value=3.3e-07 Score=89.25 Aligned_cols=198 Identities=16% Similarity=0.095 Sum_probs=125.1
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
+.||+++||.+.+ +....+.+.++|.....+.+- ...+ ..... ........|....+.......
T Consensus 69 s~Pi~Iapmtgg~~~~~~~n~~lA~aA~~~~i~~~~gs~s-~~~~----~e~~~-----~~~~~~~~~~~~~~~~~~~~l 138 (353)
T d1p4ca_ 69 SMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTAS-NMSI----EDLAR-----QCDGDLWFQLYVIHREIAQGM 138 (353)
T ss_dssp SSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTC-SSCH----HHHHH-----HCCSCEEEEECCSSHHHHHHH
T ss_pred cCceeeccccccccccchhhHHHHHHHHHhhccccccccc-cccc----hhHHH-----hcCCceeeeeccccHHHHHHh
Confidence 4689999999865 456667777888766554331 1111 11111 123566777777777766655
Q ss_pred HHHHc-CCCcEEEEecCCCch-h----hhc-----------------------Cc--ccccc---cCChHHHHHHHHHHh
Q 013813 176 ARRVE-PYCDYVDINLGCPQR-I----ARR-----------------------GN--YGAFL---MDNLPLVKSLVEKLA 221 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~-~----~~~-----------------------~~--~Gs~L---l~~p~~v~eIv~av~ 221 (436)
.+..+ .+++.+.++..-|.. . .+. .. .+... .-++....+-++.++
T Consensus 139 ~~~~~~~g~~~l~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 218 (353)
T d1p4ca_ 139 VLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLR 218 (353)
T ss_dssp HHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHH
T ss_pred HHHHHHcCCcceeeeccccccCcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCCCCCHHHHHHHH
Confidence 55554 478888887654321 0 000 00 00000 011223445667777
Q ss_pred cccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec--c-CcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCH
Q 013813 222 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--G-RTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 298 (436)
Q Consensus 222 ~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH--g-Rt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~ 298 (436)
+..+.|+.+|-- .+.+ -+..+.+.|++.+.+. + |..+ ..+..++.+.+++...++|||+.|||++.
T Consensus 219 ~~~~~~i~~kgv--~~~~----~~~~a~~~g~~~~~~s~~gg~~~~-----~~~~~~~~l~~i~~~~~~~viasGGIR~G 287 (353)
T d1p4ca_ 219 DLWPHKLLVKGL--LSAE----DADRCIAEGADGVILSNHGGRQLD-----CAISPMEVLAQSVAKTGKPVLIDSGFRRG 287 (353)
T ss_dssp HHCCSEEEEEEE--CCHH----HHHHHHHTTCSEEEECCGGGTSCT-----TCCCGGGTHHHHHHHHCSCEEECSSCCSH
T ss_pred hccccchhhhcc--hhhh----hHHHHHhcCCchhhhccccccccc-----ccccchhcccchhcccccceeecCCcCch
Confidence 778889999932 2323 3566778999998773 2 2222 12445666778887889999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhh
Q 013813 299 EDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~ 321 (436)
-|+.++|.. |||+|++||.+|.
T Consensus 288 ~Dv~KALaL-GAd~vgigrp~L~ 309 (353)
T d1p4ca_ 288 SDIVKALAL-GAEAVLLGRATLY 309 (353)
T ss_dssp HHHHHHHHT-TCSCEEESHHHHH
T ss_pred HHHHHHHHc-CCCEEEEcHHHHH
Confidence 999999997 9999999998775
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.66 E-value=1.5e-07 Score=93.06 Aligned_cols=195 Identities=16% Similarity=0.143 Sum_probs=118.7
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCC-EEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRP-LFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~p-livQL~g~d~e~~~~AA~~v~ 180 (436)
+-||+.|||-.+++..+-....++|.=.+.--..+.... ...... ... ..++. +.+.+ |-.++.+..+..+++
T Consensus 44 ~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~e~---~~~~~~-~~~-~~~~~~v~aav-Gv~~~~~er~~~l~~ 117 (365)
T d1zfja1 44 NIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITEQ---AEEVRK-VKR-SEGRLLVAAAV-GVTSDTFERAEALFE 117 (365)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHH---HHHHHH-HHH-HTSCBCCEEEE-CSSTTHHHHHHHHHH
T ss_pred CCCEEECCCCCcCCHHHHHHHHHCCCceEEcCccCHHHH---HHHhhh-hhh-ccCceEEEEEe-ccCchHHHHHHHHHH
Confidence 459999999999999887777777653332211111110 011111 111 12222 33443 445566777777788
Q ss_pred CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 181 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 181 ~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
.|+|.|-|... .+ ....+.+.++.+++.. +++|.+. +. -+.+-++.|.++|+|.|.|-
T Consensus 118 agvd~ivID~A-------~G--------~s~~~~~~i~~ik~~~~~~~iIaG-----NV-~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 118 AGADAIVIDTA-------HG--------HSAGVLRKIAEIRAHFPNRTLIAG-----NI-ATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp HTCSEEEECCS-------CT--------TCHHHHHHHHHHHHHCSSSCEEEE-----EE-CSHHHHHHHHHTTCSEEEEC
T ss_pred cCCCEEEEECC-------cc--------cccchhHHHHHHHhhCCCcceeec-----cc-ccHHHHHHHHhcCCceEEee
Confidence 89998765421 11 2345566777777655 6777665 11 12345667789999999884
Q ss_pred cCcc---ccc-CCCCCccCHHHHHHH---HhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 260 GRTR---DEK-DGKKFRADWNAIKAV---KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 260 gRt~---~~~-~~~~g~ad~~~i~~i---k~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.... ..+ ..+-|-+.+..+.++ ++..++|||+-|||.+..|+.++|.. |||+||+|.-+-.-.+
T Consensus 177 iG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~-GAd~VMlG~~lAg~~E 247 (365)
T d1zfja1 177 IGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAA-GGNAVMLGSMFAGTDE 247 (365)
T ss_dssp SSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTBSS
T ss_pred ecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhc-cCCEEEecchhccccC
Confidence 2211 100 112223445555444 44568999999999999999999986 9999999987755444
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.63 E-value=1.1e-06 Score=86.04 Aligned_cols=201 Identities=19% Similarity=0.193 Sum_probs=123.5
Q ss_pred CCcEEEccCCCC------CcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHH-HH
Q 013813 102 RPKLIVAPMVDN------SELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEIL-LN 174 (436)
Q Consensus 102 ~~~i~lAPM~gv------td~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~-~~ 174 (436)
+.||+++||.+. .+....+.+.+.|.....+-+.+. .+ .... . ..+.+...|+........ ..
T Consensus 70 ~~P~~IspMtgg~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~-s~----~~~~---~--~~~~~~~~~~~~~~~~~~~~~ 139 (359)
T d1goxa_ 70 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATS-SV----EEVA---S--TGPGIRFFQLYVYKDRNVVAQ 139 (359)
T ss_dssp SSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSS-CH----HHHH---T--TCCCCEEEEECCBSSHHHHHH
T ss_pred CCceeeccccccccCCCchHHHhhhhHHhhCCcccccccccc-cc----hhhH---H--hcCCCcccccccchhHHHHHH
Confidence 568999999985 345566677777776655443321 11 1111 1 234678899987654433 33
Q ss_pred HHHHH-cCCCcEEEEecCCCchh----hhcCccccc-----------ccC------------------ChHHHHHHHHHH
Q 013813 175 AARRV-EPYCDYVDINLGCPQRI----ARRGNYGAF-----------LMD------------------NLPLVKSLVEKL 220 (436)
Q Consensus 175 AA~~v-~~g~D~IdLN~GCP~~~----~~~~~~Gs~-----------Ll~------------------~p~~v~eIv~av 220 (436)
.++.+ ..+++.+-++...|... ..+.++... ... ++....+-++.+
T Consensus 140 l~~~~~~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 219 (359)
T d1goxa_ 140 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWL 219 (359)
T ss_dssp HHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHH
T ss_pred HHHHHHHhhcccccccccchhhhhhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHHHHHHH
Confidence 34444 45888888887655421 111100000 000 011112336677
Q ss_pred hcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCH
Q 013813 221 ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHM 298 (436)
Q Consensus 221 ~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~ 298 (436)
++..+.|+.+| .....++ +..+.+.|++.+.+...-..+.. .++.-.+.+..+++.+ ++|||+.|||++.
T Consensus 220 ~~~~~~~~~~k--g~~~~~d----a~~a~~~g~~~~~vsnhggr~ld--~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G 291 (359)
T d1goxa_ 220 QTITSLPILVK--GVITAED----ARLAVQHGAAGIIVSNHGARQLD--YVPATIMALEEVVKAAQGRIPVFLDGGVRRG 291 (359)
T ss_dssp HHHCCSCEEEE--CCCSHHH----HHHHHHTTCSEEEECCGGGTSST--TCCCHHHHHHHHHHHTTTSSCEEEESSCCSH
T ss_pred Hhhcccceeee--cccchHH----HHHHHHccccceecccccccccc--cccchhhhchhhhhccCCccceeeccCcCcH
Confidence 77778999999 3233333 55677999999988322111111 1234456777777765 6999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhh
Q 013813 299 EDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~ 321 (436)
-|+.++|.. |||+|.+||.+|.
T Consensus 292 ~Di~KALaL-GAd~vgigrp~L~ 313 (359)
T d1goxa_ 292 TDVFKALAL-GAAGVFIGRPVVF 313 (359)
T ss_dssp HHHHHHHHH-TCSEEEECHHHHH
T ss_pred HHHHHHHHc-CCCEEEEcHHHHH
Confidence 999999997 9999999999875
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=5.2e-08 Score=90.79 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=105.0
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------C
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------F 235 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------g 235 (436)
+|++|.= ....++-++++.|+|.|-+| +.+.++|.++.++.+ .... +.|++-++- +
T Consensus 76 l~~gGGI-~s~~~~~~~~~~Ga~kVvi~--------------s~~~~~~~~~~~~~~-~~~~--~~v~iD~~~~~~~~~g 137 (241)
T d1qo2a_ 76 IQIGGGI-RSLDYAEKLRKLGYRRQIVS--------------SKVLEDPSFLKSLRE-IDVE--PVFSLDTRGGRVAFKG 137 (241)
T ss_dssp EEEESSC-CSHHHHHHHHHTTCCEEEEC--------------HHHHHCTTHHHHHHT-TTCE--EEEEEEEETTEECCTT
T ss_pred hhhhhhh-hhhhhhhhccccccceEecC--------------cccccCchhhhhhcc-cccc--eeeecccccccccccC
Confidence 5776642 33445666778899999876 345667776665433 2222 234443332 2
Q ss_pred CC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh-----
Q 013813 236 PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE----- 307 (436)
Q Consensus 236 ~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~----- 307 (436)
|. ..+..++++.+++.|+..|.++.-.++++.. .+|++.++.+++.+++||+++|||.+.+|++++.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~---G~d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~ 214 (241)
T d1qo2a_ 138 WLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQ---EHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETN 214 (241)
T ss_dssp CSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTC---CCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTT
T ss_pred cccceeeehhHHHHHhhccccceEEEeehhhhhhcc---ccchhhhhhhhccCCceEEEECCCCCHHHHHHHHHcccccc
Confidence 21 2367789999999999999999988876654 479999999999999999999999999999998763
Q ss_pred cCcceeeeehHHhhCCccch
Q 013813 308 TGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 308 tGaDgVmIGRgal~nP~lf~ 327 (436)
.|++||.+|++++.+---+.
T Consensus 215 ~~~~gvivG~al~~g~l~~~ 234 (241)
T d1qo2a_ 215 GLLKGVIVGRAFLEGILTVE 234 (241)
T ss_dssp TSEEEEEECHHHHTTSSCHH
T ss_pred CCEeeEEEHHHHHCCCCCHH
Confidence 36999999999876543333
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=98.61 E-value=2.6e-07 Score=92.01 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
|-.++...++..+++.|+|.|=|-.. . | ..+.+.++++.+++.. ++||.+. +. -+.+-
T Consensus 147 g~~~~~~~ra~~L~~aG~D~ivID~A--------h--G-----~s~~~~~~i~~ik~~~~~v~vIaG-----NV-~T~e~ 205 (388)
T d1eepa_ 147 SIDIDTIERVEELVKAHVDILVIDSA--------H--G-----HSTRIIELIKKIKTKYPNLDLIAG-----NI-VTKEA 205 (388)
T ss_dssp CSCTTHHHHHHHHHHTTCSEEEECCS--------C--C-----SSHHHHHHHHHHHHHCTTCEEEEE-----EE-CSHHH
T ss_pred CCCHHHHHHHHHHHhhccceeeeecc--------c--c-----chHHHHHHHHHHHHHCCCCceeec-----cc-cCHHH
Confidence 33455667777778889998877521 1 1 2355677888887665 7888777 21 12345
Q ss_pred HHHHHHcCccEEEeccC------cccccCCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgR------t~~~~~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.|.++|+|.|.|--. |+.. .+-|.+.+..+..+.+ ...+|||+-|||.+.-|+.++|.. |||+||+
T Consensus 206 a~~L~~~GaD~VkVGiGpGs~CtTr~~--~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~-GAd~VMl 282 (388)
T d1eepa_ 206 ALDLISVGADCLKVGIGPGSICTTRIV--AGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAA-GADSVMI 282 (388)
T ss_dssp HHHHHTTTCSEEEECSSCSTTSHHHHH--HCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHH-TCSEEEE
T ss_pred HHHHHhcCCCeeeeccccccccccccc--cccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEEe-ccceeec
Confidence 66778999999988322 1111 1122344555555544 458999999999999999999986 9999999
Q ss_pred ehHHhhCCc
Q 013813 316 AESLLENPA 324 (436)
Q Consensus 316 GRgal~nP~ 324 (436)
|+.+-.-.+
T Consensus 283 G~~lAg~~E 291 (388)
T d1eepa_ 283 GNLFAGTKE 291 (388)
T ss_dssp CHHHHTBTT
T ss_pred chhhhcccC
Confidence 988765443
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=5.3e-07 Score=90.25 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=96.9
Q ss_pred CCCCEEEEecCCC-HHHHHHHHHHHcC-CCcEEEEecCCCchhh-------------------------hcCccccccc-
Q 013813 156 EDRPLFVQFCAND-PEILLNAARRVEP-YCDYVDINLGCPQRIA-------------------------RRGNYGAFLM- 207 (436)
Q Consensus 156 ~e~plivQL~g~d-~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~-------------------------~~~~~Gs~Ll- 207 (436)
...+...|+..+. .+......+.++. |++++-++...|..-. ...+.+..+.
T Consensus 148 ~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (414)
T d1kbia1 148 DKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSK 227 (414)
T ss_dssp SSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBT
T ss_pred CccchhhcccccccHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhcccccccccHHHHHHH
Confidence 3456789988765 4444444455654 8888877766654100 0000111111
Q ss_pred -CChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh--
Q 013813 208 -DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-- 284 (436)
Q Consensus 208 -~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-- 284 (436)
-++.+.-+.+++++...+.|+.+|--. ..+ -+..+.++|++.+.+.+....+.... ....| .+..+.+.
T Consensus 228 ~~~~~l~~~~i~~i~~~~~~~~i~kgi~--~~~----da~~~~~~G~~~i~vsnhggr~~d~~-~~~~~-~l~~i~~~~~ 299 (414)
T d1kbia1 228 FIDPSLTWKDIEELKKKTKLPIVIKGVQ--RTE----DVIKAAEIGVSGVVLSNHGGRQLDFS-RAPIE-VLAETMPILE 299 (414)
T ss_dssp TBCTTCCHHHHHHHHHHCSSCEEEEEEC--SHH----HHHHHHHTTCSEEEECCTTTTSSTTC-CCHHH-HHHHHHHHHH
T ss_pred hcccCCCHHHHHHHhccCCceEEeeccc--hhH----HHHHHHhcCCcceeeccccccccccc-ccccc-chhhhhhhhh
Confidence 112233356778888889999999432 222 35567789999998843322222111 12223 34444322
Q ss_pred -----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 285 -----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 285 -----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
.++|||+.|||++.-|+.++|.. |||+|+|||.+|.
T Consensus 300 ~~~v~~~~~viadGGIR~G~DVaKALAL-GAdaVgigrp~L~ 340 (414)
T d1kbia1 300 QRNLKDKLEVFVDGGVRRGTDVLKALCL-GAKGVGLGRPFLY 340 (414)
T ss_dssp TTTCBTTBEEEEESSCCSHHHHHHHHHH-TCSEEEECHHHHH
T ss_pred hhccCCceeEEecCCcCcHHHHHHHHHc-CCCEEEEcHHHHH
Confidence 25999999999999999999997 9999999998875
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.51 E-value=2.7e-07 Score=86.51 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=101.4
Q ss_pred CEEEEecCC--CHHHHHHHHHHHcCCCcEEEEec--CCCc--hhhhcCccccccc--CChHHHHHHHHHHhcccCccEEE
Q 013813 159 PLFVQFCAN--DPEILLNAARRVEPYCDYVDINL--GCPQ--RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 159 plivQL~g~--d~e~~~~AA~~v~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~~~iPVsV 230 (436)
-++.=+.+. +.+...+.++.+..|+|.|||-+ .-|. +.+.....--+|. -+.+.+.++++.+++..++|+.+
T Consensus 6 ali~y~taG~P~~~~s~~~l~~l~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivl 85 (248)
T d1geqa_ 6 SLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVL 85 (248)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHGGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEE
T ss_pred ceEEEEcCcCCCHHHHHHHHHHHHcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEE
Confidence 355445554 56788888887777999999975 4454 1111111111221 25688889999999888889865
Q ss_pred EeccCC-ChhhHHHHHHHHHHcCccEEEe-------------------------ccCcc-c-----------c------c
Q 013813 231 KIRVFP-NLQDTIKYAKMLEDAGCSLLAV-------------------------HGRTR-D-----------E------K 266 (436)
Q Consensus 231 KiRlg~-~~~d~~~~ak~le~aG~d~I~V-------------------------HgRt~-~-----------~------~ 266 (436)
=.-... -.....+|++.+.++|++++++ -.-+. + + .
T Consensus 86 m~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~ 165 (248)
T d1geqa_ 86 MTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSL 165 (248)
T ss_dssp EECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECC
T ss_pred EeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEEec
Confidence 421100 0011235566666666666655 11110 0 0 0
Q ss_pred CCCCC-----c-cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 267 DGKKF-----R-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 267 ~~~~g-----~-ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
.+-+| + .--+.++++|+.+++||+..-||++++|+.++++. +||||.||++++.
T Consensus 166 ~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~-~ADGvIVGSaiv~ 225 (248)
T d1geqa_ 166 YGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKE-GANGVVVGSALVK 225 (248)
T ss_dssp C-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHT-TCSEEEECHHHHH
T ss_pred ccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhc-CCCEEEECHHHHH
Confidence 11111 0 11467889999999999999999999999999986 8999999999864
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.44 E-value=7e-07 Score=84.49 Aligned_cols=163 Identities=11% Similarity=0.120 Sum_probs=102.8
Q ss_pred CCCEEEEecCC--CHHHHHHHHHHH-cCCCcEEEEec--CCCch---hhhcCccccccc--CChHHHHHHHHHHhccc-C
Q 013813 157 DRPLFVQFCAN--DPEILLNAARRV-EPYCDYVDINL--GCPQR---IARRGNYGAFLM--DNLPLVKSLVEKLALNL-N 225 (436)
Q Consensus 157 e~plivQL~g~--d~e~~~~AA~~v-~~g~D~IdLN~--GCP~~---~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~~-~ 225 (436)
...+|.=+.+. |.+...++++.+ +.|+|.|||-+ .-|.. ...+- .--+|. -+.+.+.++++.+++.. .
T Consensus 16 ~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a-~~~al~~G~~~~~~~~~~~~~r~~~~~ 94 (267)
T d1qopa_ 16 EGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNA-NLRAFAAGVTPAQCFEMLAIIREKHPT 94 (267)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHH-HHHHHHTTCCHHHHHHHHHHHHHHCSS
T ss_pred CceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhh-hhhcccccchhhhhhhhhhhhcccccc
Confidence 34455555554 567778888765 56999999984 45551 11110 111111 25677888888888764 6
Q ss_pred ccEEEEeccCCCh-hhHHHHHHHHHHcCccEEEecc-------------------------Cc-c-----------cc--
Q 013813 226 VPVSCKIRVFPNL-QDTIKYAKMLEDAGCSLLAVHG-------------------------RT-R-----------DE-- 265 (436)
Q Consensus 226 iPVsVKiRlg~~~-~d~~~~ak~le~aG~d~I~VHg-------------------------Rt-~-----------~~-- 265 (436)
+|+.+=.-...-. -...+|++.+.++|+++++|.. -| . .+
T Consensus 95 ~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFi 174 (267)
T d1qopa_ 95 IPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYT 174 (267)
T ss_dssp SCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCE
T ss_pred cceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhh
Confidence 8886652110000 0124567777777777777610 00 0 00
Q ss_pred ----cCCCCC------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 266 ----KDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 266 ----~~~~~g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
..+-+| ..--+.++++++..++||+...||++++|+.+.++. +||||+||++++.
T Consensus 175 Y~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~-~ADGvIVGSAivk 239 (267)
T d1qopa_ 175 YLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRA-GAAGAISGSAIVK 239 (267)
T ss_dssp EEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHT-TCSEEEECHHHHH
T ss_pred hhhcccccCCcccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHHhc-CCCEEEECHHHHH
Confidence 011111 112477999999999999999999999999998885 9999999999876
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=98.41 E-value=8.2e-07 Score=87.51 Aligned_cols=186 Identities=17% Similarity=0.095 Sum_probs=107.7
Q ss_pred CcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCC
Q 013813 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPY 182 (436)
Q Consensus 103 ~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g 182 (436)
-||+-|||-.|++..+-....++|.=.+..-..+.+... ... .............+.-.+ ....+-.+++.+
T Consensus 51 iPIIsAnMDTVt~~~mA~~la~~GglgvihR~~~ie~~~---~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~L~~ag 122 (362)
T d1pvna1 51 IPLVSAIMQSVSGEKMAIALAREGGISFIFGSQSIESQA---AMV---HAVKNFRYLVGAGINTRD--FRERVPALVEAG 122 (362)
T ss_dssp SSEEECSCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH---HHH---HHHHTCCCCCEEEECSSS--HHHHHHHHHHHT
T ss_pred CcEEecCCCCcCCHHHHHHHHHCCCEEEEeecCCHHHHH---HHh---hhhhhcccccccccchhh--hHHHHHHHhhcC
Confidence 489999999999998866666676533332222211110 000 011111222233333333 333444456667
Q ss_pred CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc
Q 013813 183 CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG 260 (436)
Q Consensus 183 ~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg 260 (436)
+|.|=|... .++. +.+.+.++.+++.. .+||.+. +.- +.+.++.|.++|+|.|-|--
T Consensus 123 ~d~i~IDvA--------hG~~-------~~v~~~i~~ir~~~~~~~~IiAG-----NVa-T~e~~~~L~~aGaD~vkVGI 181 (362)
T d1pvna1 123 ADVLCIDSS--------DGFS-------EWQKITIGWIREKYGDKVKVGAG-----NIV-DGEGFRYLADAGADFIKIGI 181 (362)
T ss_dssp CSEEEECCS--------CCCB-------HHHHHHHHHHHHHHGGGSCEEEE-----EEC-SHHHHHHHHHHTCSEEEECS
T ss_pred ceEEeechh--------ccch-------hHHHHHHHHHHHhhccceeeecc-----ccc-CHHHHHHHHHhCCcEEEecc
Confidence 777665521 1222 34556666665433 4778777 211 22446677889999998831
Q ss_pred ------CcccccCCCCCccCHHHHHHHHhh---------CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 261 ------RTRDEKDGKKFRADWNAIKAVKNA---------LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 261 ------Rt~~~~~~~~g~ad~~~i~~ik~~---------~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
-|+.. .+-|-+.+..|.++++. .++|||+-|||++..|+.++|.. |||+||+|.-+-
T Consensus 182 G~Gs~CTTr~~--tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~-GAd~VM~G~~lA 253 (362)
T d1pvna1 182 GGGSICITREQ--KGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAM-GADFIMLGRYFA 253 (362)
T ss_dssp SCSTTBCHHHH--TCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHT-TCSEEEESHHHH
T ss_pred cccccccchhh--hccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEE-eccceeehhhhh
Confidence 12211 11223455566555432 36999999999999999999986 999999997664
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.38 E-value=1.9e-06 Score=81.22 Aligned_cols=163 Identities=14% Similarity=0.126 Sum_probs=106.2
Q ss_pred CCEEEEecCC--CHHHHHHHHHHH-cCCCcEEEEe--cCCCch--hhhcCccccccc--CChHHHHHHHHHHhcccCccE
Q 013813 158 RPLFVQFCAN--DPEILLNAARRV-EPYCDYVDIN--LGCPQR--IARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPV 228 (436)
Q Consensus 158 ~plivQL~g~--d~e~~~~AA~~v-~~g~D~IdLN--~GCP~~--~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~~~iPV 228 (436)
.-++.=+.+. +.+.+.++++.+ +.|+|.|||- +..|.. .+.....--+|. -+.+.+.++++.+++...+|+
T Consensus 17 ~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ 96 (261)
T d1rd5a_ 17 TAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPV 96 (261)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCE
T ss_pred CeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCce
Confidence 3355555554 678889999765 5689999998 567761 111111111222 256788899999998888888
Q ss_pred EEEecc--------------C--------CChhhHHHHHHHHHHcCccEEEeccC-cccc-----------------cCC
Q 013813 229 SCKIRV--------------F--------PNLQDTIKYAKMLEDAGCSLLAVHGR-TRDE-----------------KDG 268 (436)
Q Consensus 229 sVKiRl--------------g--------~~~~d~~~~ak~le~aG~d~I~VHgR-t~~~-----------------~~~ 268 (436)
.+=.-. | ...++..++.+.+.+.|.+.|-+..- |.+. ..+
T Consensus 97 ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~G 176 (261)
T d1rd5a_ 97 VLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNG 176 (261)
T ss_dssp EEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSC
T ss_pred eeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccC
Confidence 654211 1 12345566667777777776655221 1100 011
Q ss_pred CCC-----c-cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 269 KKF-----R-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 269 ~~g-----~-ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
-+| . ..-++++++++..++||+..-||.+++|++++.+. |||||+||.+++.
T Consensus 177 vTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~-gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 177 VTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQW-GADGVIIGSAMVR 234 (261)
T ss_dssp CBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHT-TCSEEEECHHHHH
T ss_pred cccccccchhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhc-CCCEEEECHHHHH
Confidence 111 1 11367889999999999999999999999999885 8999999999865
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=98.31 E-value=5.2e-06 Score=76.42 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=94.5
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC-CChhhHHHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKM 247 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg-~~~~d~~~~ak~ 247 (436)
....++...++.|+|.||+=+ ++|...-.+.+.+.+-++++++.+ +.++-|-+-.+ .+.++....++.
T Consensus 71 ~K~~E~~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~ 140 (225)
T d1mzha_ 71 VKVKEAVEAVRDGAQELDIVW----------NLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEI 140 (225)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEee----------chhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCCHHHHHHHHHH
Confidence 344556667889999999964 255555567888888888887776 44444433333 355677888999
Q ss_pred HHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 248 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 248 le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+.++|+|+|--.-. + .++.+..+.++.+++.+ ++.|-++|||+|.+++.++++. |++-+....+
T Consensus 141 a~~aGadfiKTSTG----~--~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~-Ga~RiGtSs~ 206 (225)
T d1mzha_ 141 CIEAGADFIKTSTG----F--APRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEA-GADRIGTSSG 206 (225)
T ss_dssp HHHHTCSEEECCCS----C--SSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHT-TCSEEEESCH
T ss_pred HHHcccceEeecCC----C--CCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHh-chhheecCcH
Confidence 99999999943222 1 12245667788887765 5899999999999999999997 9996554443
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.30 E-value=1.8e-06 Score=85.22 Aligned_cols=193 Identities=15% Similarity=0.109 Sum_probs=113.4
Q ss_pred CcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhh--hhh--hccCCCCCEEEEecCCCHHHHHHHHHH
Q 013813 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRN--EEF--ATCKEDRPLFVQFCANDPEILLNAARR 178 (436)
Q Consensus 103 ~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~--~~~--~~~~~e~plivQL~g~d~e~~~~AA~~ 178 (436)
-||+-|||-.|++..+-....++|.=.+..-..+.+.....-.... ... ...+....+.+...- .++++.++..+
T Consensus 46 iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~-~~~~~~r~~~l 124 (368)
T d2cu0a1 46 IPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAV-SPFDIKRAIEL 124 (368)
T ss_dssp SSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEE-CTTCHHHHHHH
T ss_pred CCEEeCCCCCcCCHHHHHHHHHCCCeeEecccCCHHHHHHHHHhhhhhhhccccccccCccEEEEecc-ChHHHHHHHHH
Confidence 4899999999999988776677775333322222111100000000 000 011122334433322 34566777777
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
++.|+|.|-|... .+ ..+.+.+.++.+++..++||.+.=- -+.+- + +...|+|+|-|
T Consensus 125 ~~aGvd~ivID~A-------~G--------h~~~~i~~lK~ir~~~~~~vIaGNV--aT~e~----~--~~l~gaD~VkV 181 (368)
T d2cu0a1 125 DKAGVDVIVVDTA-------HA--------HNLKAIKSMKEMRQKVDADFIVGNI--ANPKA----V--DDLTFADAVKV 181 (368)
T ss_dssp HHTTCSEEEEECS-------CC--------CCHHHHHHHHHHHHTCCSEEEEEEE--CCHHH----H--TTCTTSSEEEE
T ss_pred HHcCCCEEEecCc-------cc--------chhhhhhhhhhhhhhcccceeeccc--cCHHH----H--HhhhcCcceee
Confidence 8889999877632 11 1234566778888888888876511 12222 2 23468999877
Q ss_pred cc--C-ccccc-CCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 259 HG--R-TRDEK-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 259 Hg--R-t~~~~-~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
-- . .+..+ ..+-|.+.+..+.++.+ ..++|||+.|||.+..|+.++|.. |||+||+|..+-
T Consensus 182 GIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~-GAd~VMlG~~lA 249 (368)
T d2cu0a1 182 GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAA-GADAVMLGNLLA 249 (368)
T ss_dssp CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHT-TCSEEEESTTTT
T ss_pred cccCcccccchhhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeee-ccceeeccchhc
Confidence 21 1 11110 11223455666666554 358999999999999999999986 999999997653
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=98.23 E-value=9.2e-06 Score=74.02 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=94.6
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C-CChhhHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKM 247 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g-~~~~d~~~~ak~ 247 (436)
...++...++.|+|.||+=+ ++|..+-.+.+.+.+-++++++.++- ..+|+=+ + .+.++....++.
T Consensus 72 k~~e~~~ai~~GA~EiD~V~----------n~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~ 140 (211)
T d1ub3a_ 72 KALEAALACARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEA 140 (211)
T ss_dssp HHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEee----------ccchhhcCCHHHHHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHH
Confidence 34455566788999999864 26766667899999989998887752 3455423 2 355778888999
Q ss_pred HHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 248 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 248 le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+.++|+|+|--.-.. .++.+..+.++.+++.+ ++.|-++|||+|.+++.++++. |++-+...+|
T Consensus 141 a~~aGadfiKTSTG~------~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~a-Ga~riGtSs~ 206 (211)
T d1ub3a_ 141 AIRGGADFLKTSTGF------GPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKA-GASRLGTSSG 206 (211)
T ss_dssp HHHHTCSEEECCCSS------SSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHT-TCSEEEETTH
T ss_pred HHHhccceEEecCCC------CCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHH-hhhHhccCcH
Confidence 999999999443211 11245677777777765 5889999999999999999997 9987654443
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=98.18 E-value=7.6e-06 Score=77.27 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=99.8
Q ss_pred CEEEEecCC--CHHHHHHHHHHHcCCCcEEEEec--CCCc--hhhhcCccccccc--CChHHHHHHHHHHhcccCccEEE
Q 013813 159 PLFVQFCAN--DPEILLNAARRVEPYCDYVDINL--GCPQ--RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 159 plivQL~g~--d~e~~~~AA~~v~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~~~iPVsV 230 (436)
-|+.=+.+. +.+.+.++++.+..|+|.|||-+ .-|. +.+.....--+|. -+.+.+.++++.+++..++|+.+
T Consensus 17 ali~yitaG~P~~~~~~~~l~~l~~gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivl 96 (271)
T d1ujpa_ 17 ALIPYLTAGFPSREGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFL 96 (271)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEE
T ss_pred eEEEEEeCcCCCHHHHHHHHHHHHcCCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEE
Confidence 355555554 56788888887777999999985 4454 1111111111222 26788899999999888888876
Q ss_pred EeccCCC-hhhHHHHHHHHHHcCccEEEecc--------------------------Cccc-----------c------c
Q 013813 231 KIRVFPN-LQDTIKYAKMLEDAGCSLLAVHG--------------------------RTRD-----------E------K 266 (436)
Q Consensus 231 KiRlg~~-~~d~~~~ak~le~aG~d~I~VHg--------------------------Rt~~-----------~------~ 266 (436)
=.-...- .....+|++.+.++|+|++++.. -|.+ + .
T Consensus 97 m~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~ 176 (271)
T d1ujpa_ 97 MTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSV 176 (271)
T ss_dssp ECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC
T ss_pred EeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchhhhhcc
Confidence 5221000 01124567777777777776611 1100 0 0
Q ss_pred CCCCC------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 267 DGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 267 ~~~~g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
.+-+| ..--+.++++|+..++||...=||++++++.. + . +||||+||++++.
T Consensus 177 ~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~-~-~-~ADGvIVGSAiV~ 234 (271)
T d1ujpa_ 177 TGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQ-A-A-VADGVVVGSALVR 234 (271)
T ss_dssp ------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHH-H-T-TSSEEEECHHHHH
T ss_pred cCccCccccchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHH-h-C-CCCEEEEcHHHHH
Confidence 11111 11246789999999999999999999999976 3 3 8999999999864
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.15 E-value=1.5e-06 Score=81.22 Aligned_cols=90 Identities=19% Similarity=0.320 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
..++.++|+.+++.|++.|++-.-.+.. .....+++.+.++.+...+|+...|||++.+++++++.. ||+-|.+|+
T Consensus 29 ~gdP~~~a~~~~~~g~dei~ivDld~~~---~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~-Ga~kviigs 104 (253)
T d1thfd_ 29 SGDPVELGKFYSEIGIDELVFLDITASV---EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILR-GADKVSINT 104 (253)
T ss_dssp TTCHHHHHHHHHHTTCCEEEEEESSCSS---SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHT-TCSEEEESH
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecccc---cCcccHHHHHHHHHhccCccceeecccccchhhhhHHhc-CCCEEEECh
Confidence 3578899999999999999886543321 112457889999999999999999999999999999996 999999999
Q ss_pred HHhhCCccchhhhh
Q 013813 318 SLLENPALFAGFRT 331 (436)
Q Consensus 318 gal~nP~lf~~i~~ 331 (436)
.++.||.++.++..
T Consensus 105 ~~~~n~~~l~~~~~ 118 (253)
T d1thfd_ 105 AAVENPSLITQIAQ 118 (253)
T ss_dssp HHHHCTHHHHHHHH
T ss_pred HHhhChHHHHHHHH
Confidence 99999999888753
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.14 E-value=1.2e-06 Score=84.99 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHH-----------HHHHHH
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED-----------VQKCLE 306 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~ed-----------a~~~l~ 306 (436)
..++++.|+.+++.|||.|++-.-.+..........+++.|+++.+.+.+||.+.|||+|.+| |+++++
T Consensus 47 iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~ 126 (323)
T d1jvna1 47 LGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 126 (323)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHH
Confidence 358899999999999999998544332111111134688899999999999999999999654 788898
Q ss_pred hcCcceeeeehHHhhCCccchhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i 329 (436)
. |||-|.||++++.||.++.++
T Consensus 127 ~-GadKVvI~T~ai~~p~~~~e~ 148 (323)
T d1jvna1 127 S-GADKVSIGTDAVYAAEKYYEL 148 (323)
T ss_dssp H-TCSEEEECHHHHHHHHHHHHT
T ss_pred c-CCCeEEechHHhhChHHHHHH
Confidence 6 999999999999877766543
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.11 E-value=2.2e-06 Score=80.17 Aligned_cols=89 Identities=27% Similarity=0.385 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.|+|..-..... ....+++.++++.+.+.+|+.+.|||++.+++++++.. ||+-|.+|+.
T Consensus 32 ~dP~~~a~~~~~~gadei~ivDl~~~~~---~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~-G~~kVii~s~ 107 (252)
T d1h5ya_ 32 GDPVEMAVRYEEEGADEIAILDITAAPE---GRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRA-GADKVSVNTA 107 (252)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCTT---THHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHH-TCSEEEESHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccc---ccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhc-CCcEEEeccc
Confidence 3678899999999999998876554321 12467889999999999999999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 108 ~~~~~~~~~~~~~ 120 (252)
T d1h5ya_ 108 AVRNPQLVALLAR 120 (252)
T ss_dssp HHHCTHHHHHHHH
T ss_pred ccCCcchHHHHHH
Confidence 9999999987753
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.10 E-value=2.1e-05 Score=73.19 Aligned_cols=142 Identities=13% Similarity=0.204 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------------
Q 013813 167 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------ 234 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------------ 234 (436)
.||.+++ +..+.|+++|-+..- ...|||.+ + -+..+++.+++||-.|==+
T Consensus 63 ~d~~~~a---~~~~~gA~aiSVLTd-------~~~F~Gs~----~----dl~~v~~~~~~PiLrKDFIid~~QI~ea~~~ 124 (247)
T d1a53a_ 63 RDPIEYS---KFMERYAVGLSILTE-------EKYFNGSY----E----TLRKIASSVSIPILMKDFIVKESQIDDAYNL 124 (247)
T ss_dssp CCHHHHH---HHHTTTCSEEEEECC-------CTTTCCCH----H----HHHHHHHHCCSCEEEESCCCSHHHHHHHHHH
T ss_pred cCHHHHH---HHHHhCCCeEEEecC-------ccccccch----H----HHHHHHhccccceeecccccChHHHHHHHHh
Confidence 4565543 556778999988732 22356654 2 3445566778999988211
Q ss_pred C----------CChhhHHHHHHHHHHcCccEE-EeccCcc--------------cccCCCCCccCHHHHHHHHhhC--CC
Q 013813 235 F----------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RI 287 (436)
Q Consensus 235 g----------~~~~d~~~~ak~le~aG~d~I-~VHgRt~--------------~~~~~~~g~ad~~~i~~ik~~~--~i 287 (436)
| .+.++..++.+.+.+.|.+.+ -||...- ..+.-.+...|.+...++.+.+ ++
T Consensus 125 GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~~a~iIGINnRnL~t~~vd~~~~~~L~~~ip~~~ 204 (247)
T d1a53a_ 125 GADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALRIGARFIGINSRDLETLEINKENQRKLISMIPSNV 204 (247)
T ss_dssp TCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHTTCSEEEEESBCTTTCCBCHHHHHHHHHHSCTTS
T ss_pred hcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhCCCCeEeeeccChhhhhhhhhHHHHHHhhCCCCC
Confidence 1 112233344444444444333 2332110 0011122256777777777766 78
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
.+|+-|||.+.+|++++.+. |+|+|.||.+++.+|+...
T Consensus 205 ~~IaESGI~t~~dv~~l~~~-G~davLIGeaLmk~~d~~k 243 (247)
T d1a53a_ 205 VKVAESGISERNEIEELRKL-GVNAFLIGSSLMRNPEKIK 243 (247)
T ss_dssp EEEEESCCCCHHHHHHHHHT-TCCEEEECHHHHHCTTHHH
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCEEEECHHHcCCCchhh
Confidence 99999999999999998775 9999999999999997543
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=98.10 E-value=2.2e-05 Score=73.22 Aligned_cols=129 Identities=18% Similarity=0.180 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccC-CChhhHHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF-PNLQDTIKYAKML 248 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg-~~~~d~~~~ak~l 248 (436)
...++...++.|+|.||+=+ ++|.....+.+.+.+-++++++.++ .++-|=+-.+ .+.++....++.+
T Consensus 105 K~~Ea~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~~a~~ia 174 (251)
T d1o0ya_ 105 KAHEAIFAVESGADEIDMVI----------NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVIS 174 (251)
T ss_dssp HHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEe----------ccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHHHHHHHH
Confidence 34455566788999999864 2566666788999988888888773 4443333222 3456777888999
Q ss_pred HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 249 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.++|+|+|--.-.. .++.+..+.++.+++.+ .+.|-++|||+|.+++.++++. |++-+...
T Consensus 175 ~~aGadfvKTSTGf------~~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~a-Ga~riGtS 237 (251)
T d1o0ya_ 175 KLAGAHFVKTSTGF------GTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMY-GADRIGTS 237 (251)
T ss_dssp HHTTCSEEECCCSS------SSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEES
T ss_pred HHhCcceeeccCCC------CCCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHH-hhHHhCCC
Confidence 99999998442221 12246667777777755 5889999999999999999997 99975433
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.09 E-value=2.4e-06 Score=79.73 Aligned_cols=90 Identities=21% Similarity=0.333 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
..+++++|+.+.+.|++.|++..-..... ....+++.++.+.+.+.+|+.+.|||++.+++++++.. ||+-|.+|+
T Consensus 29 ~gdP~~~a~~~~~~g~dei~iiDl~~~~~---~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~-Ga~kVii~s 104 (251)
T d1ka9f_ 29 AGDPVEAARAYDEAGADELVFLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLS-GADKVSVNS 104 (251)
T ss_dssp TTCHHHHHHHHHHHTCSCEEEEECCSSTT---CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHH-TCSEEEECH
T ss_pred CCCHHHHHHHHHHcCCCEEEEEecccccc---cchhHHHHHHHHHhccCcchheeccccCHHHHHHHHHc-CCCEEEECc
Confidence 35788999999999999998865443311 11457888999999999999999999999999999996 999999999
Q ss_pred HHhhCCccchhhhh
Q 013813 318 SLLENPALFAGFRT 331 (436)
Q Consensus 318 gal~nP~lf~~i~~ 331 (436)
.++.||.++.++..
T Consensus 105 ~~~~n~~~i~~~~~ 118 (251)
T d1ka9f_ 105 AAVRRPELIRELAD 118 (251)
T ss_dssp HHHHCTHHHHHHHH
T ss_pred hhhhCHHHHHHHHH
Confidence 99999999987653
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.02 E-value=6.2e-05 Score=69.10 Aligned_cols=144 Identities=17% Similarity=0.253 Sum_probs=104.0
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHcC--CCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 157 DRPLFVQFCA-NDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 157 e~plivQL~g-~d~e~~~~AA~~v~~--g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
+..+..+=.| .+.++....|++..+ +-+.|-|-. |-+ -.|+-|+....+-.+.+.+. ++-|..-+
T Consensus 64 ~~~lLPNTAGc~tA~EAvr~A~lARE~~~t~~IKLEVi~D~----------~~L~PD~~etl~Aae~Lv~e-GF~VlpY~ 132 (251)
T d1xm3a_ 64 KYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCS----------RSLLPDPVETLKASEQLLEE-GFIVLPYT 132 (251)
T ss_dssp GSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCT----------TTCCBCHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ceEEccchHHHhhHHHHHHHHHHHHHhcCCceEEEEEecCC----------CCcCCCHHHHHHHHHHHHhC-CcEEEEec
Confidence 3445666555 578999999988754 457777763 222 24777776666666655433 45555553
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
. +| ..+|+.|++.||..|---|-... .+.|..+...++.|.+..++|||.-+||.++.|+..+++. |||+
T Consensus 133 ~-----~D-~v~ak~Le~~Gc~avMPlgsPIG---Sg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMEl-G~da 202 (251)
T d1xm3a_ 133 S-----DD-VVLARKLEELGVHAIMPGASPIG---SGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMEL-GADG 202 (251)
T ss_dssp C-----SC-HHHHHHHHHHTCSCBEECSSSTT---CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHT-TCSE
T ss_pred C-----CC-HHHHHHHHHcCChhHHHhhhhhh---cCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHHc-cCCE
Confidence 2 23 34799999999998866554332 2334667788999999999999999999999999999997 9999
Q ss_pred eeeehHHhh
Q 013813 313 VLSAESLLE 321 (436)
Q Consensus 313 VmIGRgal~ 321 (436)
|++.++.-.
T Consensus 203 VLvNTAIA~ 211 (251)
T d1xm3a_ 203 VLLNTAVSG 211 (251)
T ss_dssp EEESHHHHT
T ss_pred EEechhhhc
Confidence 999988743
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.96 E-value=7.2e-06 Score=75.17 Aligned_cols=110 Identities=22% Similarity=0.398 Sum_probs=79.3
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec-----------------------
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH----------------------- 259 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH----------------------- 259 (436)
|-+=|.+|..+.+|++.+ ++||..|.|+|... -++.|++.|+|++.=.
T Consensus 40 GvaRm~dp~~i~ei~~~v----sipvmak~righ~~-----eaqiLe~~~vd~ideseVLTpad~~~hi~k~~fkvpfVc 110 (254)
T d1znna1 40 GVARMADPTVIEEVMNAV----SIPVMAKVRIGHYV-----EARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVC 110 (254)
T ss_dssp CCCCCCCHHHHHHHHHHC----SSCEEEEEETTCHH-----HHHHHHHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEE
T ss_pred CcccCCCHHHHHHHHHhc----ccccccccCCCchH-----HHHhHHhhCCCcccHhHhcccccHHHhhcccceeeeeeC
Confidence 778889999988887664 79999999998632 2678888888887530
Q ss_pred -c-----------------CcccccC--------------------------------CCCCccCHHHHHHHHhh--CCC
Q 013813 260 -G-----------------RTRDEKD--------------------------------GKKFRADWNAIKAVKNA--LRI 287 (436)
Q Consensus 260 -g-----------------Rt~~~~~--------------------------------~~~g~ad~~~i~~ik~~--~~i 287 (436)
. ||..... .....+.++++.++++. +.+
T Consensus 111 g~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v 190 (254)
T d1znna1 111 GCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPV 190 (254)
T ss_dssp EESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSS
T ss_pred CCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCc
Confidence 0 1100000 00002345666677653 678
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
|+++.|||.|+.|+..+++. |||||.+|+|+..-
T Consensus 191 ~~~~~~Gi~tpadaa~~Mel-G~dgV~v~s~I~~s 224 (254)
T d1znna1 191 VNFAAGGVTTPADAALMMHL-GADGVFVGSGIFKS 224 (254)
T ss_dssp EEEEESSCCSHHHHHHHHHT-TCSEEEECGGGGGS
T ss_pred eEEecCCCCChhhHHHHHHc-CCCEEEEcchhhcC
Confidence 99999999999999999997 99999999987553
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.93 E-value=5.4e-05 Score=71.25 Aligned_cols=140 Identities=17% Similarity=0.201 Sum_probs=105.9
Q ss_pred CCHHHHHHHHH-HHcCCCcEEEEecCCCchh--------hhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC
Q 013813 167 NDPEILLNAAR-RVEPYCDYVDINLGCPQRI--------ARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 235 (436)
Q Consensus 167 ~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~--------~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg 235 (436)
.+|+++++.|+ .++.||++|-++.+++... ..+...|-...++.+.-.+.|+++|+.+ ++.+.+....+
T Consensus 25 ~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG~~~~l~vDan~~ 104 (278)
T d2gl5a1 25 VTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSL 104 (278)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHHhccccceeeccccc
Confidence 57999999886 4577999999997764321 1111112222334566677888888887 57788887778
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.++++.+++.+++.++.+| ++... +-+++..+++++.+++||.+.-.+.+.+++.++++...+|.+++
T Consensus 105 ~~~~~Ai~~~~~L~~~~l~wi-------EePi~---~~d~~~~~~L~~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~ 174 (278)
T d2gl5a1 105 LGTNSAIQFAKAIEKYRIFLY-------EEPIH---PLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQP 174 (278)
T ss_dssp SCHHHHHHHHHHHGGGCEEEE-------ECSSC---SSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred ccchhhHHHHHHhccccccee-------ccccc---ccchhhhhhhccccccceecccccCChHHHhhhhccccceeEee
Confidence 999999999999999998776 11111 34788899999999999999889999999999999888888875
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
-
T Consensus 175 d 175 (278)
T d2gl5a1 175 D 175 (278)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.89 E-value=8.3e-06 Score=75.26 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+++++|+.+.+.|++.|+|-.-.+.. +. ..+++.++.+.+.+.+||.+.|||++.++++++++. |++-|.+|+.
T Consensus 31 ~dP~~~a~~~~~~ga~~l~i~DLd~~~--~~--~~~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~~-Ga~kVvi~s~ 105 (239)
T d1vzwa1 31 GSPLEAALAWQRSGAEWLHLVDLDAAF--GT--GDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALAT-GCTRVNLGTA 105 (239)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEEHHHHH--TS--CCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHT-TCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecccc--cc--cchHHHHHHHHhhcCcceEeecccccchhhhhhhcc-ccccchhhHH
Confidence 478899999999999999886443321 11 357899999999999999999999999999999996 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 106 ~~~~~~~~~~~~~ 118 (239)
T d1vzwa1 106 ALETPEWVAKVIA 118 (239)
T ss_dssp HHHCHHHHHHHHH
T ss_pred hhhccccchhhhc
Confidence 9999999987653
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=97.87 E-value=2.5e-05 Score=82.70 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=78.1
Q ss_pred CChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC------CCCccCHH-HHH
Q 013813 208 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWN-AIK 279 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~------~~g~ad~~-~i~ 279 (436)
..++-+.+.|..+++.. +.||.||+-.+.... .++..+.++|+|+|+|.|.....-.. ..| .-|. .+.
T Consensus 553 ~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~---~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~G-lP~~~~l~ 628 (771)
T d1ea0a2 553 YSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIG---TIAAGVAKANADIILISGNSGGTGASPQTSIKFAG-LPWEMGLS 628 (771)
T ss_dssp SSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHH---HHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSC-CCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHH---HHHHHHHhcCCCEEEEecCCCccccccHHHhhcCC-cCHHHHHH
Confidence 45788899999999876 899999986554433 45566678999999998765431100 001 1122 233
Q ss_pred HHHhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 280 AVKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 280 ~ik~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++.+.+ +|.+++.||+.|+.|+.+++.. |||+|.+||++|-
T Consensus 629 ~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aL-GAD~v~~gt~~m~ 676 (771)
T d1ea0a2 629 EVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAML-GAEEFGIGTASLI 676 (771)
T ss_dssp HHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHT-TCSEEECCHHHHH
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHh-CCCchHHhHHHHH
Confidence 333322 5999999999999999999986 9999999999864
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.85 E-value=8.2e-05 Score=68.56 Aligned_cols=132 Identities=13% Similarity=0.038 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-CChhhHHHHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKML 248 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-~~~~d~~~~ak~l 248 (436)
....++...++.|+|.||+=+- +|+......+.+.++++.++ ..+.++-|-+-.+ .+.++....++.+
T Consensus 89 ~k~~E~~~Ai~~GAdEID~Vin----------~~~~~~~~~~ev~~~~~~~~-~~g~~lKVIlEt~~L~~~~i~~a~~~a 157 (234)
T d1n7ka_ 89 VKLVEAQTVLEAGATELDVVPH----------LSLGPEAVYREVSGIVKLAK-SYGAVVKVILEAPLWDDKTLSLLVDSS 157 (234)
T ss_dssp HHHHHHHHHHHHTCCEEEECCC----------GGGCHHHHHHHHHHHHHHHH-HTTCEEEEECCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEec----------hhhhhhhhHHHHHHHHHHHh-ccCceEEEEEeccccchHHHHHHHHHH
Confidence 3444555667889999998531 23333334466777776554 3456655554443 3556777888889
Q ss_pred HHcCccEEEeccCcccccCCCCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 249 EDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.++|+|+|--. .++....+ +.+...+.+.....++.|-++|||+|.+|+.++++. |++-+....
T Consensus 158 ~~aGadFVKTS----TG~~~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~a-Ga~rIGtSs 222 (234)
T d1n7ka_ 158 RRAGADIVKTS----TGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGA-GADIIGTSS 222 (234)
T ss_dssp HHTTCSEEESC----CSSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHT-TCSEEEETT
T ss_pred HHhhhhheeec----ccccCCCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHc-cCceeecch
Confidence 99999999432 11111100 122222333333347899999999999999999996 999654433
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=97.85 E-value=0.00018 Score=66.07 Aligned_cols=140 Identities=15% Similarity=0.173 Sum_probs=106.2
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 157 DRPLFVQFCAND-PEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 157 e~plivQL~g~d-~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
..|+...+...+ ++++.++++.++ .||..+-+.+|- .+++.=.+.|+++++.+ ++.+.|..
T Consensus 5 ~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~---------------~~~~~D~~~v~~ir~~~g~~~~l~vDa 69 (244)
T d2chra1 5 AIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGF---------------RSPQDDLIHMEALSNSLGSKAYLRVDV 69 (244)
T ss_dssp EEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSS---------------SCHHHHHHHHHHHHHHTTTTSEEEEEC
T ss_pred cEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCC---------------CCHHHHHHHHHHHHHhcCCCceEEEeC
Confidence 346766776655 566778877765 499999997642 12333345667777776 47788887
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.-+|+.++++++++.+++.++.+| ++.-. +-|++.++++++.+++||.+.-.+.+.+++.++++...+|.
T Consensus 70 N~~~~~~~A~~~~~~l~~~~i~~i-------EeP~~---~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~ 139 (244)
T d2chra1 70 NQAWDEQVASVYIPELEALGVELI-------EQPVG---RENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDV 139 (244)
T ss_dssp TTCCCTHHHHHHHHHHHTTTCCEE-------ECCSC---SSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSE
T ss_pred CCCcchHHHHHHHHHHhhhhHHHH-------hhhhh---hccchhhhhhccceeeeeeecccccccchhhhhhhcceeEE
Confidence 778999999999999999998775 21111 34788899999999999999999999999999999878999
Q ss_pred eeeehHHhh
Q 013813 313 VLSAESLLE 321 (436)
Q Consensus 313 VmIGRgal~ 321 (436)
|++.-.-++
T Consensus 140 v~~d~~~~G 148 (244)
T d2chra1 140 FSLKLCNMG 148 (244)
T ss_dssp ECCCHHHHT
T ss_pred Eeecccccc
Confidence 987754443
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=3.1e-05 Score=72.18 Aligned_cols=138 Identities=18% Similarity=0.155 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEe--ccC-CChhhHH-HH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI--RVF-PNLQDTI-KY 244 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKi--Rlg-~~~~d~~-~~ 244 (436)
....++...++.|+|.||+=+ .||...-.+.+.+.+-++++++.+ ...+.+|+ -.+ .+.++.+ ..
T Consensus 85 ~K~~E~~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a 154 (250)
T d1p1xa_ 85 IALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKA 154 (250)
T ss_dssp HHHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEee----------cchhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHH
Confidence 344455567788999999864 255555567788888787777654 23445554 322 1234444 45
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
++.+.++|+|+|--.-.. ..+.+..+.+..+++.+ ++.|-++|||+|++++.++++. |++-+ |-
T Consensus 155 ~~ia~~aGadFvKTSTG~------~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~-ga~~i--G~ 225 (250)
T d1p1xa_ 155 SEISIKAGADFIKTSTGK------VAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI-ADELF--GA 225 (250)
T ss_dssp HHHHHHTTCSEEECCCSC------SSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHH-HHHHH--CT
T ss_pred HHHHHHcCcCeEEecCCc------CCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHH-HHHHh--Cc
Confidence 688899999999432211 11134444444443322 5889999999999999999986 66643 44
Q ss_pred HHhhCCccch
Q 013813 318 SLLENPALFA 327 (436)
Q Consensus 318 gal~nP~lf~ 327 (436)
..+ +|..|+
T Consensus 226 ~~~-~~~~fR 234 (250)
T d1p1xa_ 226 DWA-DARHYR 234 (250)
T ss_dssp TSC-STTTBC
T ss_pred ccc-ccCcee
Confidence 443 677775
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.77 E-value=0.00062 Score=62.62 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=100.8
Q ss_pred CCEEEEecC-CCHHHHHHHHHHHcC-C--CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 158 RPLFVQFCA-NDPEILLNAARRVEP-Y--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g-~d~e~~~~AA~~v~~-g--~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
..+..+-.| .++++..++|++..+ + -+.|.|..- .+ --.|+.|+-...+..+.+.+. ++-|..-+
T Consensus 66 ~~~LPNTAGc~taeeAv~~A~larE~~~~~~~iKLEVi-------~d--~~~L~Pd~~etl~Aa~~Lv~e-gF~Vlpy~- 134 (243)
T d1wv2a_ 66 YTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVL-------AD--QKTLFPNVVETLKAAEQLVKD-GFDVMVYT- 134 (243)
T ss_dssp SEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCB-------SC--TTTCCBCHHHHHHHHHHHHTT-TCEEEEEE-
T ss_pred eeecccccccccHHHHHHHHHHHHHHhCCCceEEEeee-------cc--ccccCCcHHHHHHHHHHhhcC-ceEEEecc-
Confidence 334566555 578999999988755 3 378888741 11 124667776666666665432 44444442
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
. +| .-+++.+++.|+..+---|-... ...|-.+...++.+++..++|||.-+||.++.|+..+++. |||||
T Consensus 135 -~---~D-~v~ak~le~~Gc~~vMplgsPIG---sg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMEl-G~dgV 205 (243)
T d1wv2a_ 135 -S---DD-PIIARQLAEIGCIAVMPLAGLIG---SGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMEL-GCEAV 205 (243)
T ss_dssp -C---SC-HHHHHHHHHSCCSEEEECSSSTT---CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHH-TCSEE
T ss_pred -C---CC-HHHHhHHHHcCceeeeecccccc---cccccccHHHHHhccccCCcceEeecccCCHHHHHHHHHc-cCCEE
Confidence 1 22 34689999999998855443322 2234566777888888999999999999999999999997 99999
Q ss_pred eeehHHhh
Q 013813 314 LSAESLLE 321 (436)
Q Consensus 314 mIGRgal~ 321 (436)
.+++|...
T Consensus 206 LvnsaIa~ 213 (243)
T d1wv2a_ 206 LMNTAIAH 213 (243)
T ss_dssp EESHHHHT
T ss_pred EechHhhc
Confidence 99998744
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=97.75 E-value=0.00036 Score=63.80 Aligned_cols=135 Identities=13% Similarity=0.171 Sum_probs=102.1
Q ss_pred CCCEEEEecCCCHHHH-HHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 157 DRPLFVQFCANDPEIL-LNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 157 e~plivQL~g~d~e~~-~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
..|+...++..+++.. +++.+.++ .|+..+-|-+|-+ +++.-.+.++++++.+ ++.+.|..
T Consensus 5 ~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~---------------~~~~Di~~i~~ir~~~g~~~~l~vDa 69 (242)
T d1muca1 5 SLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGAN---------------PVEQDLKHVVTIKRELGDSASVRVDV 69 (242)
T ss_dssp EEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEEC
T ss_pred eEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCC---------------CHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 3567777877776655 56667675 5999999987521 2233334455555554 46788887
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.-+++.++++++++.+++.|+.+| ++... +-|++..+++++.+++||.+...+.+.+++.++++...+|.
T Consensus 70 N~~~~~~~A~~~~~~l~~~~i~~i-------EeP~~---~~d~~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~~~d~ 139 (242)
T d1muca1 70 NQYWDESQAIRACQVLGDNGIDLI-------EQPIS---RINRGGQVRLNQRTPAPIMADESIESVEDAFSLAADGAASI 139 (242)
T ss_dssp TTCBCHHHHHHHHHHHHHTTCCCE-------ECCBC---TTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSE
T ss_pred CCCCcHHHHHHHHHHhhhhhHHHh-------hcchh---hhhhhhhhhhhhhhhheeecccccccccchhhhhhcccccc
Confidence 778999999999999999998876 22111 35788899999999999999999999999999999877898
Q ss_pred eeee
Q 013813 313 VLSA 316 (436)
Q Consensus 313 VmIG 316 (436)
+++-
T Consensus 140 ~~~d 143 (242)
T d1muca1 140 FALK 143 (242)
T ss_dssp EEEC
T ss_pred cccc
Confidence 8875
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.74 E-value=0.00037 Score=63.99 Aligned_cols=136 Identities=12% Similarity=0.146 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
.+|+++++.|+. ++.||..+-+..|.|... ++ .+++.-.+.|+++++.+ ++.+.|....+++.+++++
T Consensus 22 ~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~-----~~----~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~ 92 (255)
T d1rvka1 22 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS-----WA----PDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA 92 (255)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST-----TC----CCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc-----cc----cCHHHHHHHHHHHHHHcCCccceecccccccccchhhh
Confidence 468999988865 466999999998865421 12 34566667777888776 4677788777899999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHH-HHHHHHHhcCcceeeeehHHhh
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME-DVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~e-da~~~l~~tGaDgVmIGRgal~ 321 (436)
+++.+++.++.+|- +... +-|++..+++++.+++||.+...+.+.. +...+++...+|.+++--+.++
T Consensus 93 ~~~~l~~~~l~~iE-------eP~~---~~d~~~~~~l~~~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~d~~~~G 161 (255)
T d1rvka1 93 LGRGLEKLGFDWIE-------EPMD---EQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVG 161 (255)
T ss_dssp HHHHHHTTTCSEEE-------CCSC---TTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHT
T ss_pred hhhhcccchhhhhc-------CCcc---cccHHHHHHHHHhcccceeehhhcccchhhhhhhhhhchhhhccccccccc
Confidence 99999999998872 1111 3478889999999999999999999875 6788888888998887644433
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=97.70 E-value=0.00042 Score=63.34 Aligned_cols=137 Identities=13% Similarity=0.192 Sum_probs=102.0
Q ss_pred CCCEEEEecCCCH-HHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEe
Q 013813 157 DRPLFVQFCANDP-EILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 232 (436)
Q Consensus 157 e~plivQL~g~d~-e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKi 232 (436)
..|+...+++.++ +++.++++.+. .|+..+-|-.|- ++++.-.+.++++++.+ ++.+.+-.
T Consensus 5 ~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~---------------~~~~~Di~~v~~ir~~~g~~~~l~vDa 69 (243)
T d1nu5a1 5 SIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA---------------RTPAQDLEHIRSIVKAVGDRASVRVDV 69 (243)
T ss_dssp EEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGCEEEEEC
T ss_pred ceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCC---------------CCHHHHHHHHHHHHHHhCcccceEEEC
Confidence 4567777776655 45555666664 599999887541 23444445555665555 36677776
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.-+++.++++++++.+++.++.++ ++... +.+++..+++++..++||.+.-.+.+.+++..+++...+|.
T Consensus 70 N~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~~~d~ 139 (243)
T d1nu5a1 70 NQGWDEQTASIWIPRLEEAGVELV-------EQPVP---RANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDA 139 (243)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCCEE-------ECCSC---TTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred CCCccchhHHHHHHHhcchhhhhh-------hhhhh---hccccccccchhccccccccccccccchhhhhccccccccc
Confidence 678999999999999999998877 21111 34788899999999999999999999999999999877899
Q ss_pred eeeehH
Q 013813 313 VLSAES 318 (436)
Q Consensus 313 VmIGRg 318 (436)
|++--+
T Consensus 140 ~~~d~~ 145 (243)
T d1nu5a1 140 FSLKLC 145 (243)
T ss_dssp EEECHH
T ss_pred cccccc
Confidence 987643
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.68 E-value=3.7e-05 Score=69.25 Aligned_cols=79 Identities=15% Similarity=0.325 Sum_probs=60.8
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.+...|+|++.+..-..........+..|+.++++++..++||++-||| +.+++.++++. |++||.+.++++..++
T Consensus 112 ~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI-~~~ni~~~~~~-Ga~gvAvis~I~~~~d 189 (206)
T d1xi3a_ 112 ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGI-NKDNAREVLKT-GVDGIAVISAVMGAED 189 (206)
T ss_dssp HHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSC-CTTTHHHHHTT-TCSEEEESHHHHTSSS
T ss_pred HHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHh-CCCEEEEhHHHHCCCC
Confidence 455677899999997654332211223567999999999999999999999 56889888875 9999999999988665
Q ss_pred c
Q 013813 325 L 325 (436)
Q Consensus 325 l 325 (436)
.
T Consensus 190 p 190 (206)
T d1xi3a_ 190 V 190 (206)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=97.66 E-value=0.00011 Score=77.86 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=77.8
Q ss_pred CChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC------CCCCccCHHH-HH
Q 013813 208 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNA-IK 279 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~------~~~g~ad~~~-i~ 279 (436)
..++-+.++|..+++.. +.||.||+-...... .++..+.++|+|+|+|.|.....-. ..-| .-|++ +.
T Consensus 580 ysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~---~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~G-lP~~~gl~ 655 (809)
T d1ofda2 580 YSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIG---TIAAGVAKANADIIQISGHDGGTGASPLSSIKHAG-SPWELGVT 655 (809)
T ss_dssp SSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHH---HHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBC-CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeecChH---HHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCC-ccHHHHHH
Confidence 35788899999998866 789999976544333 3455556799999999876543110 0001 11221 23
Q ss_pred HHHhh-----C--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 280 AVKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 280 ~ik~~-----~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.+. + +|.+++.||+.|+.|+..++.. |||+|.+||++|----
T Consensus 656 ~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aL-GAD~v~~gt~~l~alG 706 (809)
T d1ofda2 656 EVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALM-GAEEYGFGSIAMIAEG 706 (809)
T ss_dssp HHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHT-TCSEEECSHHHHHHTT
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHh-CCCchhHhHHHHHHHH
Confidence 33222 2 5899999999999999999986 9999999999875443
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=97.51 E-value=0.0019 Score=58.18 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=100.4
Q ss_pred CEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC
Q 013813 159 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 235 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg 235 (436)
|+..-+...+|+++.+.|+ .++.|++.+-+.+|.+ +.+.-.+.++++++.+ ++.+.+-..-+
T Consensus 6 ~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~---------------~~~~d~~~i~~ir~~~g~~~~i~vD~N~~ 70 (234)
T d1jpma1 6 ETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQG 70 (234)
T ss_dssp EBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTTC
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCC---------------CHHHHHHHHHHHHHHcCchhhhhhhcccc
Confidence 3445566788999988885 5567999999987632 2333345555666555 45666666668
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++.++++.+++.+.+..-+ ++.. .+-|++..+++++..++||.+...+.+..+..++++...+|.|++
T Consensus 71 ~~~~~a~~~~~~le~~~~~i~~~-----EeP~---~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~ 142 (234)
T d1jpma1 71 WRPKEAVTAIRKMEDAGLGIELV-----EQPV---HKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINI 142 (234)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEE-----ECCS---CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCSEEEE
T ss_pred cchHHHHHHHHHHHhccCceeee-----cCCc---cccCHHHHHHhhccccceeecccccccchhhhhhhccCCcCeEEE
Confidence 88899999999999876553322 1111 134789999999999999999999999999999999877999987
Q ss_pred eh
Q 013813 316 AE 317 (436)
Q Consensus 316 GR 317 (436)
--
T Consensus 143 d~ 144 (234)
T d1jpma1 143 KL 144 (234)
T ss_dssp CH
T ss_pred ee
Confidence 53
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=97.49 E-value=0.001 Score=60.74 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
|.+++++++.++ .++.||..+-+..|. .+.+.-.+.|+++++.+ ++.+.+....+++.++++
T Consensus 18 ~~~~~~~~~~~~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai 82 (247)
T d1tzza1 18 GKGLSMLRGEMRGYLDRGYNVVKMKIGG---------------APIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI 82 (247)
T ss_dssp --CHHHHHHHHHHHHTTTCSEEEEECSS---------------SCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCC---------------CCHHHHHHHHHHHHHhccCCceEEecccccccchhHH
Confidence 468999988885 556799999998652 13455566677777765 466777777789999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
++++.+++.++.+|- +... +-|++..+++++.+++||.+.-.+.+..++.++++.
T Consensus 83 ~~~~~l~~~~i~wiE-------eP~~---~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~ 137 (247)
T d1tzza1 83 AYAKMLRDYPLFWYE-------EVGD---PLDYALQAALAEFYPGPMATGENLFSHQDARNLLRY 137 (247)
T ss_dssp HHHHHHTTSCCSEEE-------CCSC---TTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhc-------cccc---cccchhhhhhhhccccccccchhhhhhHHHHHHHHc
Confidence 999999999988772 1111 347888999999999999999999999999999986
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.49 E-value=0.00075 Score=60.57 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=94.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCch-hh----h--c---CcccccccCChHHHHHHHHHHhcccCc
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR-IA----R--R---GNYGAFLMDNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~-~~----~--~---~~~Gs~Ll~~p~~v~eIv~av~~~~~i 226 (436)
.|++.=|.+.++++....++.+ +.|+..|||.+-+|.. .+ + . -..|+.-..+++.+.+.+++=.
T Consensus 9 ~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa----- 83 (202)
T d1wa3a1 9 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGA----- 83 (202)
T ss_dssp HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTC-----
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcc-----
Confidence 5788789999999999999765 5589999999998874 11 1 1 1135555566777766665522
Q ss_pred cEEEEeccCCCh-----------------hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCc
Q 013813 227 PVSCKIRVFPNL-----------------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 227 PVsVKiRlg~~~-----------------~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iP 288 (436)
.+.| ..+.+. ..+-+ +..+.++|++.+-++.-... |+ .+++.++.-. ++|
T Consensus 84 ~fiv--sP~~~~~v~~~~~~~~i~~iPGv~TpsE-i~~A~~~G~~~lK~fPa~~~------G~---~~lk~l~~p~p~i~ 151 (202)
T d1wa3a1 84 EFIV--SPHLDEEISQFCKEKGVFYMPGVMTPTE-LVKAMKLGHTILKLFPGEVV------GP---QFVKAMKGPFPNVK 151 (202)
T ss_dssp SEEE--CSSCCHHHHHHHHHHTCEEECEECSHHH-HHHHHHTTCCEEEETTHHHH------HH---HHHHHHHTTCTTCE
T ss_pred cEEe--CCCCcHHHHHHHHhcCCceeCCcCcHHH-HHHHHHCCCCEEEecchhhc------CH---HHHHHHhCcccCCc
Confidence 2221 112110 11112 12234677777766543211 11 5677777654 799
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++..||| +.+++.++++. |+.+|.+|+.++.
T Consensus 152 ~iptGGI-~~~n~~~~l~a-ga~avg~Gs~l~~ 182 (202)
T d1wa3a1 152 FVPTGGV-NLDNVCEWFKA-GVLAVGVGSALVK 182 (202)
T ss_dssp EEEBSSC-CTTTHHHHHHH-TCSCEEECHHHHC
T ss_pred EEeeCCC-CHHHHHHHHHC-CCeEEEEchhhcC
Confidence 9999999 68999999986 9999999987764
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.43 E-value=8.6e-05 Score=68.35 Aligned_cols=87 Identities=15% Similarity=0.326 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+.+.|++.++|-.-..... + .+.+...+..+++ ..+|+...|||+|.++++++++. |+|-|.+++.
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~~-~--~~~~~~~~~~~~~-~~~pl~~gGGI~s~~~~~~~~~~-Ga~kVvi~s~ 104 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAIE-N--SGENLPVLEKLSE-FAEHIQIGGGIRSLDYAEKLRKL-GYRRQIVSSK 104 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHH-C--CCTTHHHHHHGGG-GGGGEEEESSCCSHHHHHHHHHT-TCCEEEECHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccc-c--CCcchhheehhcc-cccchhhhhhhhhhhhhhhcccc-ccceEecCcc
Confidence 5788999999999999998854332211 1 1344455555554 45899999999999999999986 9999999999
Q ss_pred HhhCCccchhhh
Q 013813 319 LLENPALFAGFR 330 (436)
Q Consensus 319 al~nP~lf~~i~ 330 (436)
++.||.+...+.
T Consensus 105 ~~~~~~~~~~~~ 116 (241)
T d1qo2a_ 105 VLEDPSFLKSLR 116 (241)
T ss_dssp HHHCTTHHHHHH
T ss_pred cccCchhhhhhc
Confidence 999999887654
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.39 E-value=0.00035 Score=63.44 Aligned_cols=150 Identities=19% Similarity=0.349 Sum_probs=98.8
Q ss_pred CEEEEecCCCHHHHHHHHHHHc-CCCcEEEE--ecC--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 159 PLFVQFCANDPEILLNAARRVE-PYCDYVDI--NLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~-~g~D~IdL--N~G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
.++.+|...|...+.+..+.++ .|+|.|-+ --| +|.- .+| + +.++.+++.+.+|+-|-+=
T Consensus 3 kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~-----s~g------~----~~i~~i~~~t~~~~dvHLM 67 (217)
T d2flia1 3 KIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNI-----SFG------A----DVVASMRKHSKLVFDCHLM 67 (217)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB-----CBC------H----HHHHHHHTTCCSEEEEEEE
T ss_pred EEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCcc-----ccC------H----HHHHHHHhcCCCceEeEEE
Confidence 3678889999999998887765 57886544 333 4431 122 2 3566777777888888743
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc-------------------------------------------cCCCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKK 270 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-------------------------------------------~~~~~ 270 (436)
. .++..+++.+.++|++.|++|.-+... ..++.
T Consensus 68 v----~~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~ 143 (217)
T d2flia1 68 V----VDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFG 143 (217)
T ss_dssp S----SSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCS
T ss_pred e----cCHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCccc
Confidence 3 233345667777888888887432100 01122
Q ss_pred C----ccCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 271 F----RADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 271 g----~ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
| +..++-++++++. .+++|..-|||+ .+.+..+.+. |||.+++|++++.++++-..+
T Consensus 144 Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~a-Gad~~V~Gsaif~~~d~~~~i 209 (217)
T d2flia1 144 GQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEA-GANVFVAGSYLFKASDLVSQV 209 (217)
T ss_dssp SCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHH-TCCEEEESHHHHTSSCHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHC-CCCEEEEchHHhCCCCHHHHH
Confidence 2 2235556666543 468999999997 5788888876 999999999999888765543
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.00079 Score=62.39 Aligned_cols=143 Identities=15% Similarity=0.242 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------------
Q 013813 167 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------ 234 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------------ 234 (436)
.+|.+ +++..+.|+++|-+... ...|||.+. . ++.+++.+++||-.|==+
T Consensus 68 ~~p~~---~a~~~~~gA~aiSVLTe-------~~~F~Gs~~----~----l~~v~~~~~~PiLrKDFIid~~QI~ear~~ 129 (254)
T d1piia2 68 FDPAR---IAAIYKHYASAISVLTD-------EKYFQGSFN----F----LPIVSQIAPQPILCKDFIIDPYQIYLARYY 129 (254)
T ss_dssp CCHHH---HHHHHTTTCSEEEEECC-------STTTCCCTT----H----HHHHHHHCCSCEEEESCCCSHHHHHHHHHT
T ss_pred chhHH---HHHHHHhccCceEEecc-------cccCCCCHH----H----HHHHHhccccccchhcccCcHHHHHHHHhh
Confidence 34544 34566778999988742 234666652 2 345566778999888211
Q ss_pred C----------CChhhHHHHHHHHHHcCccEE-EeccCcc--------------cccCCCCCccCHHHHHHHHhhC--CC
Q 013813 235 F----------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RI 287 (436)
Q Consensus 235 g----------~~~~d~~~~ak~le~aG~d~I-~VHgRt~--------------~~~~~~~g~ad~~~i~~ik~~~--~i 287 (436)
| .+.++..++.+.+.+.|.+.+ -||...- ..+.-.+...|.+...++...+ +.
T Consensus 130 GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRnL~tf~vd~~~t~~L~~~ip~~~ 209 (254)
T d1piia2 130 QADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNV 209 (254)
T ss_dssp TCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHHHCTTS
T ss_pred ccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHhhcccccCccccchhhhhhhhHHHHHHHHhCCCCC
Confidence 1 122334455555555555543 3443210 0001112246777777777665 67
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.+++-+||.+.+|+.. +.. |+|+|.||.+++..|+.-..+
T Consensus 210 ~~VsESGI~~~~d~~~-l~~-g~davLiGeslm~~~dp~~~l 249 (254)
T d1piia2 210 TVISESGINTYAQVRE-LSH-FANGFLIGSALMAHDDLHAAV 249 (254)
T ss_dssp EEEEESCCCCHHHHHH-HTT-TCSEEEECHHHHTCSCHHHHH
T ss_pred EEEEcCCCCCHHHHHH-HHc-CCCEEEEChHHhCCCCHHHHH
Confidence 8999999999999976 465 899999999999988865433
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.30 E-value=0.0022 Score=58.42 Aligned_cols=120 Identities=14% Similarity=0.184 Sum_probs=76.5
Q ss_pred HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C-CChhhHHHHHHHHHHcCc
Q 013813 177 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 177 ~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g-~~~~d~~~~ak~le~aG~ 253 (436)
+.+.+|+|.||+=+ ++|..+-.+.+.+.+-+.++++.++ +..+|+=+ + .+.++....++.+.++|+
T Consensus 74 ~a~~~GAdEID~Vi----------n~~~~~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGa 142 (226)
T d1vcva1 74 SRLAEVADEIDVVA----------PIGLVKSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGA 142 (226)
T ss_dssp HHHTTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCeeEEEe----------cHHHHhCCCHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCc
Confidence 45667999999863 1455555677888877778877763 33455433 2 355677778888999999
Q ss_pred cEEEe-ccCcccc---cCCCCCccCHH---HHHHHHhhC--CCcEEEccCCCCHHHHHHHHHh
Q 013813 254 SLLAV-HGRTRDE---KDGKKFRADWN---AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 254 d~I~V-HgRt~~~---~~~~~g~ad~~---~i~~ik~~~--~iPVianGGI~s~eda~~~l~~ 307 (436)
|+|-- +|-.... ..+.+..+..+ .++++.+.. ++-|=++|||+|.+++.++++.
T Consensus 143 dFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a 205 (226)
T d1vcva1 143 HFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp SEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred ceeeecccccCCcccccccCcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHh
Confidence 99943 3321100 00011123333 444444432 6889999999999999999975
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=97.27 E-value=0.00048 Score=64.07 Aligned_cols=136 Identities=14% Similarity=0.199 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHH---HHHhccc-CccEEEEeccC-CChhhHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV---EKLALNL-NVPVSCKIRVF-PNLQDTIKYA 245 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv---~av~~~~-~iPVsVKiRlg-~~~~d~~~~a 245 (436)
...++...++.|+|.||+=+ ++|..+-.+.+.+.+.+ ..+++.+ +.++-|=+-.+ .+.++.+..+
T Consensus 87 K~~Ea~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~e~~~~i~~~~~~~~~~~lKVIlEt~~L~~~e~i~~~ 156 (256)
T d2a4aa1 87 VLNDTEKALDDGADEIDLVI----------NYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKT 156 (256)
T ss_dssp HHHHHHHHHHHTCSEEEEEC----------CHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEec----------cHHHHhcCcHHHHHHHHHHHHHHHhhccCCeeEeeehhhhcCcHHHHHHH
Confidence 34455566788999999853 14444444556666554 4444444 34443333322 2234444444
Q ss_pred H-HHHHcCccEEE-eccCcccccCCCCCccCHHHHHHHHhh------------CCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 246 K-MLEDAGCSLLA-VHGRTRDEKDGKKFRADWNAIKAVKNA------------LRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 246 k-~le~aG~d~I~-VHgRt~~~~~~~~g~ad~~~i~~ik~~------------~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
. .+.++|+|+|- -+|... +.+..+.+..+++. -++.|=++|||+|.+++.+++.. |++
T Consensus 157 ~~~~~~aGadFVKTSTG~~~-------~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~-g~~ 228 (256)
T d2a4aa1 157 TLAVLNGNADFIKTSTGKVQ-------INATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILL-ARR 228 (256)
T ss_dssp HHHHHTTTCSEEECCCSCSS-------CCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHH-HHH
T ss_pred HHHHHhcccHHHHhccCCCC-------CCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHH-HHH
Confidence 4 45789999992 233211 12333333333221 36889999999999999999986 777
Q ss_pred eeeeehHHhhCCccch
Q 013813 312 GVLSAESLLENPALFA 327 (436)
Q Consensus 312 gVmIGRgal~nP~lf~ 327 (436)
.+ |-..+ +|..|+
T Consensus 229 ~l--G~~~~-~~~~fR 241 (256)
T d2a4aa1 229 FL--SSLAC-HPDNFR 241 (256)
T ss_dssp HT--C-------CCEE
T ss_pred hc--ccccc-cCCcee
Confidence 54 33322 666664
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=97.15 E-value=0.0013 Score=60.89 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=35.6
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
++.+|+.+||.+.+|+.. ++. |+|+|.||.++|.+|+.-..+
T Consensus 208 ~~i~IsESGI~~~~dv~~-l~~-g~davLIGesLm~~~d~~~~l 249 (254)
T d1vc4a_ 208 GGVLVAESGYSRKEELKA-LEG-LFDAVLIGTSLMRAPDLEAAL 249 (254)
T ss_dssp CSEEEEESCCCSHHHHHT-TTT-TCSEEEECHHHHTSSCHHHHH
T ss_pred CCEEEEccCCCCHHHHHH-HHc-CCCEEEEChhhcCCCCHHHHH
Confidence 678999999999999866 565 999999999999988865433
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=97.13 E-value=0.0023 Score=58.53 Aligned_cols=125 Identities=10% Similarity=0.119 Sum_probs=93.0
Q ss_pred CCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~ 242 (436)
|.+++++.+-| +.++.|+..+-+..|.+ ++.-.+.++++++.+ ++.+.|...-+++.++++
T Consensus 13 ~~s~ee~~~~a~~~~~~Gf~~~KikvG~~----------------~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~ 76 (252)
T d1yeya1 13 GYSDEKLVRLAKEAVADGFRTIKLKVGAN----------------VQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAI 76 (252)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCCC----------------HHHHHHHHHHHHHHhCCCceEeeccccCcchHHHH
Confidence 55677787766 45677999999987632 344455667777765 467778877789999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+++.+++.++.+|- ++. . +.|+....++++. .++||.+.=.+.+..++.++++...+|.+++-
T Consensus 77 ~~~~~l~~~~~~~iE------eP~-~---~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~d 141 (252)
T d1yeya1 77 DWMRQLAEFDIAWIE------EPT-S---PDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQID 141 (252)
T ss_dssp HHHHTTGGGCCSCEE------CCS-C---TTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred HHHHhhhhcCceeec------CCc-c---hhhHHHHHHHhhccCCCceeccccccchhhhhhHhhccccceeccc
Confidence 999999999988772 111 1 3567777676665 58999999999999999999998778988753
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=97.05 E-value=0.0076 Score=53.99 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=95.0
Q ss_pred cCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhH
Q 013813 165 CANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDT 241 (436)
Q Consensus 165 ~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~ 241 (436)
...+++.+.+-+ +.++.|+..+-|..|-+ +.+.-.+.|+++++.+ ++.+.|-..-+++.+++
T Consensus 9 ~~d~~~~~~e~~~~~~~~G~~~~KikvG~~---------------~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A 73 (227)
T d2mnra1 9 SLDGVKLATERAVTAAELGFRAVKTKIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAA 73 (227)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCCEEEEccCCC---------------CHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHH
Confidence 344566666555 44567999999986522 2333345556666655 56777877778999999
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.++++.+++.|+.+| ++... +-+++..+++++.+++||.+.-.+.+.++...+++...+|.+++-
T Consensus 74 ~~~~~~l~~~~~~~i-------EeP~~---~~~~~~~~~l~~~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~d 138 (227)
T d2mnra1 74 IKRSQALQQEGVTWI-------EEPTL---QHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPD 138 (227)
T ss_dssp HHHHHHHHHHTCSEE-------ECCSC---TTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred HHHHHHhhhchhhhh-------cCccc---ccchhhhHHHHHHcCCccccCceeEeechhhhhHhcCceeeeecc
Confidence 999999999998887 21111 347888999999999999999999999999999999888888763
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.93 E-value=0.001 Score=60.48 Aligned_cols=80 Identities=16% Similarity=0.312 Sum_probs=57.9
Q ss_pred HHHHHHcCccEEEeccCccccc-CCCCCccCHHHHHHHHh-hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~-~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++.+.+.|+|+|.+..-..... .+......++.++.+++ .+++||++-||| +.+++.++++. |++||.+.++++..
T Consensus 128 ~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~~~-Ga~giAvis~I~~a 205 (226)
T d2tpsa_ 128 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVIQA-GADGVSMISAISQA 205 (226)
T ss_dssp HHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHHHT-TCSEEEESHHHHTS
T ss_pred HHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHHHh-CCCEEEEhHHhhcC
Confidence 4456678999998866533221 11111234677777765 579999999999 67999998875 99999999999986
Q ss_pred Cccc
Q 013813 323 PALF 326 (436)
Q Consensus 323 P~lf 326 (436)
++..
T Consensus 206 ~dp~ 209 (226)
T d2tpsa_ 206 EDPE 209 (226)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 6643
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=96.87 E-value=0.013 Score=52.67 Aligned_cols=133 Identities=13% Similarity=0.136 Sum_probs=98.3
Q ss_pred CCCEEEEec-CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DRPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~-g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
..|+..+++ +.+++++.+.++ .++.||..+-|..| | ..|.+.+..|-+++.. +..+.+-...
T Consensus 4 ~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg-~-------------~~Di~~i~~ir~~~g~--~~~l~vDaN~ 67 (242)
T d1sjda1 4 SVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE-P-------------GWDVEPVRAVRERFGD--DVLLQVDANT 67 (242)
T ss_dssp EEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB-T-------------TBSHHHHHHHHHHHCT--TSEEEEECTT
T ss_pred eeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECC-c-------------hhHHHHHHHHHHHhCC--CeeEeecccc
Confidence 356777776 468999988775 45679999998764 1 1344444444333322 4677777777
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++++++ +++.++.+|- +.-. +.|+...+++++..++||.+.-.+.+..+..++++...+|.++
T Consensus 68 ~~~~~~a~~~~~-l~~~~~~~iE-------eP~~---~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~ 136 (242)
T d1sjda1 68 AYTLGDAPQLAR-LDPFGLLLIE-------QPLE---EEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVN 136 (242)
T ss_dssp CCCGGGHHHHHT-TGGGCCSEEE-------CCSC---TTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred ccchhhhhHHhh-hhhhhhHHHH-------hhhh---hhhHHHHHHHHhccCcccccccccccchhhhhhhhcCccCEEE
Confidence 889999999887 8889888762 1111 3578889999999999999999999999999999986799988
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 137 ~d 138 (242)
T d1sjda1 137 IK 138 (242)
T ss_dssp EC
T ss_pred ec
Confidence 73
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=96.85 E-value=0.0049 Score=56.12 Aligned_cols=154 Identities=16% Similarity=0.285 Sum_probs=99.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHH-cCCCcEE--EEecC--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE
Q 013813 156 EDRPLFVQFCANDPEILLNAARRV-EPYCDYV--DINLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v-~~g~D~I--dLN~G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV 230 (436)
.+--+..+|.+.|...+.+..+.+ +.|+|.| |+--| ||.. .+| + ++++.+++.+++|+.|
T Consensus 9 ~~~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-----t~~------~----~~v~~i~~~t~~~~dv 73 (230)
T d1rpxa_ 9 SDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI-----TIG------P----LVVDSLRPITDLPLDV 73 (230)
T ss_dssp TSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-----CCC------H----HHHHHHGGGCCSCEEE
T ss_pred CCeEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCcc-----ccC------h----HHHhhhhhccCceeee
Confidence 445688999999999999999877 4578864 44333 4542 122 2 4566667667777766
Q ss_pred EeccCCChhhHHHHHHHHHHcCccEEEeccCccc----------------------------c-----------------
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD----------------------------E----------------- 265 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~----------------------------~----------------- 265 (436)
=+=. .++..++..+.++|++.|++|.-... .
T Consensus 74 HLMv----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~VllM~V 149 (230)
T d1rpxa_ 74 HLMI----VEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSV 149 (230)
T ss_dssp EEES----SSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESS
T ss_pred eeee----cchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEEEEEEe
Confidence 5322 34455666677777777777643100 0
Q ss_pred cCCCCC----ccCHHHHHHHHh-----hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 266 KDGKKF----RADWNAIKAVKN-----ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 266 ~~~~~g----~ad~~~i~~ik~-----~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
..|+.| +.-++-|+++++ ..++.|..-|||+. +.+..+.+. |||.+++|++++.+++.-..++
T Consensus 150 ~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~-Gad~~V~GS~if~~~d~~~~i~ 221 (230)
T d1rpxa_ 150 NPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEA-GANALVAGSAVFGAPDYAEAIK 221 (230)
T ss_dssp CTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHH-TCCEEEESHHHHTSSCHHHHHH
T ss_pred cCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHc-CCCEEEEChHHHCCCCHHHHHH
Confidence 012222 112444555433 24788999999985 678888875 9999999999999888655443
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=96.76 E-value=0.0076 Score=54.48 Aligned_cols=130 Identities=15% Similarity=0.234 Sum_probs=95.6
Q ss_pred CCEEEEec-CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 158 RPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~-g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
-|+...++ ..+++++.+.++ .++.|+..+-+-.|- + .| .+.++++++.+ ++.+.+-..-
T Consensus 5 i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~-------~-------~D----~~~v~~ir~~~~~~~l~vDaN~ 66 (244)
T d1wufa1 5 IKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP-------N-------KD----IQFVEAVRKSFPKLSLMADANS 66 (244)
T ss_dssp EEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT-------T-------BS----HHHHHHHHTTCTTSEEEEECTT
T ss_pred EEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC-------c-------HH----HHHHHHHHHhccchhhhhhhhc
Confidence 45666664 358999888775 456699999987652 0 23 24566777766 3455555555
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.+++. +++.+++.++.+| ++... +-|++..+++++.+++||.+...+.++.++.++++...+|.|+
T Consensus 67 ~~~~~~a~-~~~~l~~~~~~wi-------EeP~~---~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~ 135 (244)
T d1wufa1 67 AYNREDFL-LLKELDQYDLEMI-------EQPFG---TKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAIN 135 (244)
T ss_dssp CCCGGGHH-HHHTTGGGTCSEE-------ECCSC---SSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEE
T ss_pred cccchhhh-hhhcccccchhhh-------cCccc---ccchhhhhccccccccccccCccccchhhhhhhccccccceee
Confidence 78888886 5577889988776 22111 3468889999999999999999999999999999987789988
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 136 ~d 137 (244)
T d1wufa1 136 LK 137 (244)
T ss_dssp EC
T ss_pred cc
Confidence 65
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=96.75 E-value=0.014 Score=53.11 Aligned_cols=134 Identities=10% Similarity=0.189 Sum_probs=95.1
Q ss_pred CCEEEEecC--CCHH---HHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEE
Q 013813 158 RPLFVQFCA--NDPE---ILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS 229 (436)
Q Consensus 158 ~plivQL~g--~d~e---~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVs 229 (436)
.|+-..+.+ ..++ ++++-+ ..++.||..+-+.+| | .+++.-.+.|+++++.+ ++.+.
T Consensus 6 ip~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg-----------~----~~~~~di~~v~avr~~~G~~~~l~ 70 (256)
T d2gdqa1 6 IPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIG-----------G----TSFKEDVRHINALQHTAGSSITMI 70 (256)
T ss_dssp EEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECS-----------S----SCHHHHHHHHHHHHHHHCTTSEEE
T ss_pred EEeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-----------C----CCHHHHHHHHHHHHHHcCCCeEEe
Confidence 455555543 2333 333333 345679999999764 1 12344455667777765 57888
Q ss_pred EEeccCCChhhHHHHHHHHHHc-CccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 230 CKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 230 VKiRlg~~~~d~~~~ak~le~a-G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t 308 (436)
|....+++.++++++++.+++. ++.+| ++.-. +-|++..+++++.+++||.+.=.+.+.+++.++++..
T Consensus 71 vDan~~~~~~~A~~~~~~l~~~~~i~~~-------EeP~~---~~d~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~ 140 (256)
T d2gdqa1 71 LDANQSYDAAAAFKWERYFSEWTNIGWL-------EEPLP---FDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQR 140 (256)
T ss_dssp EECTTCCCHHHHHTTHHHHTTCSCEEEE-------ECCSC---SSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTT
T ss_pred eccccCCCHHHHHHHHHHHhhcCceeEe-------ccccc---cchHHHHHHHhhcccceeecCccccchhhHHHHHHhh
Confidence 8888889999999999999884 66655 11111 3478889999999999998888899999999999988
Q ss_pred Ccceeeee
Q 013813 309 GCEGVLSA 316 (436)
Q Consensus 309 GaDgVmIG 316 (436)
.+|.|++-
T Consensus 141 a~di~~~d 148 (256)
T d2gdqa1 141 CLDIIQPD 148 (256)
T ss_dssp CCSEECCC
T ss_pred cceeeecc
Confidence 88888754
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0042 Score=54.11 Aligned_cols=144 Identities=14% Similarity=0.102 Sum_probs=84.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~ 238 (436)
|+|.+=-.+.++..+.++.+.++.|.+++++ |.- .. +| ++ +++.+++.. +.++....-+...
T Consensus 4 l~vAlD~~~~~~~~~~~~~~~~~vdiikig~--~~~--~~--~G------~~----~i~~l~~~~~~~~i~~d~k~~d~- 66 (213)
T d1q6oa_ 4 LQVALDNQTMDSAYETTRLIAEEVDIIEVGT--ILC--VG--EG------VR----AVRDLKALYPHKIVLADAKIADA- 66 (213)
T ss_dssp EEEEECCSSHHHHHHHHHHHGGGCSEEEECH--HHH--HH--HC------TH----HHHHHHHHCTTSEEEEEEEECSC-
T ss_pred EEEEecCCCHHHHHHHHHhcCCCccEEEeCe--ecc--cc--CC------HH----HHHHHHHhcccccceeEEeeccc-
Confidence 3444445677888888888888899999984 221 11 23 23 344444433 4555544323322
Q ss_pred hhHHHHHHHHHHcCccEEEeccCccccc---------------------------------CC-------------CCC-
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------------------------DG-------------KKF- 271 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~---------------------------------~~-------------~~g- 271 (436)
. ..+++.+.++|+|.+++|+-..... .+ ..+
T Consensus 67 ~--~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 144 (213)
T d1q6oa_ 67 G--KILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGV 144 (213)
T ss_dssp H--HHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTTC
T ss_pred h--HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHHHHHHhHHHHHHHHHhcccCcCCe
Confidence 2 2245667788999999986421000 00 000
Q ss_pred ccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 272 RADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 272 ~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
......+.++++. .++++...||+. .+++.++++. |+|.+++||+++...+
T Consensus 145 ~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~~~~~~~~~-Gad~iVVGr~I~~a~d 197 (213)
T d1q6oa_ 145 AWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGI-PIHVFIAGRSIRDAAS 197 (213)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTS-CCSEEEESHHHHTSSC
T ss_pred eCCHHHHHHHHHhhccCceEecCCCcC-cCCHHHHHHc-CCCEEEEChhhcCCCC
Confidence 1112223344332 468888888885 7888888875 9999999999876443
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.63 E-value=0.037 Score=48.66 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=84.9
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhH
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDT 241 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~ 241 (436)
+-|=-.+.++..+.++.+.+++++|+++. |.- .. +| ++ .++++++..+.+|..-+.+.+-....
T Consensus 4 vALD~~~~~~a~~~~~~l~~~v~~iKvG~--~l~--~~--~G------~~----~i~~l~~~~~~~if~DlK~~Di~~t~ 67 (206)
T d2czda1 4 LALDVYEGERAIKIAKSVKDYISMIKVNW--PLI--LG--SG------VD----IIRRLKEETGVEIIADLKLADIPNTN 67 (206)
T ss_dssp EECCCCSHHHHHHHHHHHGGGCSEEEEEH--HHH--HH--HC------TT----HHHHHHHHHCCEEEEEEEECSCHHHH
T ss_pred EEeCCCCHHHHHHHHHHhCCcccEEEECH--HHH--hh--cC------HH----HHHHHHHhcCCeEEEEeeeeeecccc
Confidence 33334567777777777778899999984 211 11 23 22 34455555578877766565322223
Q ss_pred HHHHHHHHHcCccEEEeccCccccc---------------CCCC---------------------------CccCHHHHH
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKK---------------------------FRADWNAIK 279 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~---------------~~~~---------------------------g~ad~~~i~ 279 (436)
...++.+.++|+|.+|||+...... .... +....+.+.
T Consensus 68 ~~~~~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~ 147 (206)
T d2czda1 68 RLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIG 147 (206)
T ss_dssp HHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSSTHHHH
T ss_pred hheehhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccHHHHHHHHHHHhcccccccccccCchhhh
Confidence 4567888889999999987432100 0000 011223345
Q ss_pred HHHhhC--CCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 280 AVKNAL--RIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 280 ~ik~~~--~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.+++.. ++.++ .+||.. ..+..++++. |+|.+++||+++.-++-
T Consensus 148 ~~r~~~~~~~~i~-~pGI~~~~~~~~~ai~~-Gad~iVvGR~I~~a~dP 194 (206)
T d2czda1 148 YIRDRLKEGIKIL-APGIGAQGGKAKDAVKA-GADYIIVGRAIYNAPNP 194 (206)
T ss_dssp HHHHHSCTTCEEE-ECCCCSSTTHHHHHHHH-TCSEEEECHHHHTSSSH
T ss_pred hhhhhhcccceEE-CCCccccCCCHHHHHHh-CCCEEEEChhhccCCCH
Confidence 555544 23444 444432 2456667775 99999999999875544
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=96.59 E-value=0.059 Score=49.87 Aligned_cols=212 Identities=13% Similarity=0.075 Sum_probs=121.2
Q ss_pred HHHHHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccc-h--hhcc-----Chhhhhh-hhhccCCCCCEEE
Q 013813 92 RAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHS-R--IFTE-----SEKYRNE-EFATCKEDRPLFV 162 (436)
Q Consensus 92 ~~~~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa-~--~l~~-----~~~~~~~-~~~~~~~e~pliv 162 (436)
++-.|++.+-++.+++.| ++=|.-=-+++.+.|.+.+||--... . ++-. ....... .--....+.|+++
T Consensus 4 k~~~lr~l~~~~~~~~~p--~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~ 81 (275)
T d1s2wa_ 4 KTTQLKQMLNSKDLEFIM--EAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILL 81 (275)
T ss_dssp HHHHHHHHHHSSSCEEEE--EECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEE
T ss_pred HHHHHHHHHhCCCCEEee--cCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeE
Confidence 344466666667778877 66676666778888999888653221 1 1111 0000000 0001245789998
Q ss_pred EecC--CCHHHHHHHHHHH-cCCCcEEEEecC-CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc----
Q 013813 163 QFCA--NDPEILLNAARRV-EPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---- 234 (436)
Q Consensus 163 QL~g--~d~e~~~~AA~~v-~~g~D~IdLN~G-CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl---- 234 (436)
=+=. .++....+.++.+ +.|+.+|.|.-. .|.+.....+....+....+.+..+..++....+.++.+=-|.
T Consensus 82 D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~ 161 (275)
T d1s2wa_ 82 DADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFI 161 (275)
T ss_dssp ECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTT
T ss_pred ecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhh
Confidence 7632 3688888888655 569999999852 3322111111112233333445555555544444454444444
Q ss_pred -CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh--hCCCcEEEccC---CCCHHHHHHHHHhc
Q 013813 235 -FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLANGN---VRHMEDVQKCLEET 308 (436)
Q Consensus 235 -g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~--~~~iPVianGG---I~s~eda~~~l~~t 308 (436)
+...+++++=++...++|+|.|-+++.+... +.+..+.. ...+|+.+|.+ -.+. .++-+ -
T Consensus 162 ~~~gl~eai~R~~aY~eAGAD~vf~~~~~~~~----------~~~~~~~~~~~~~~pl~~~~~~~~~~~~---~eL~~-l 227 (275)
T d1s2wa_ 162 AGWGLDEALKRAEAYRNAGADAILMHSKKADP----------SDIEAFMKAWNNQGPVVIVPTKYYKTPT---DHFRD-M 227 (275)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEECCCSSSS----------HHHHHHHHHHTTCSCEEECCSTTTTSCH---HHHHH-H
T ss_pred hcCCHHHHHHHHHHHHhcCCCeeeeccccCcH----------HHHHHHHHhhcCCCCEEEecccccccHH---HHHHH-c
Confidence 2457889988999999999999999875431 23333333 35788888753 3343 34333 4
Q ss_pred CcceeeeehHH
Q 013813 309 GCEGVLSAESL 319 (436)
Q Consensus 309 GaDgVmIGRga 319 (436)
|+..|..|-.+
T Consensus 228 Gv~~v~~g~~~ 238 (275)
T d1s2wa_ 228 GVSMVIWANHN 238 (275)
T ss_dssp TCCEEEECSHH
T ss_pred CCCEEEEchHH
Confidence 99999988554
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=96.53 E-value=0.0052 Score=55.27 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHH----HHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI----KAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i----~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.+.+.+.|.+-+...-+........+.+.+ +.+++. .++||++.|||.+.+++..+++. |+|||.||++.
T Consensus 129 ~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~-g~dGvLVGsAs 207 (224)
T d1hg3a_ 129 SAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIEL-GTVGVLLASGV 207 (224)
T ss_dssp HHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEESHHH
T ss_pred HHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhC-CCCEEEEccee
Confidence 4556677777776643322111111112223333 333332 37999999999999999999886 99999999999
Q ss_pred hhCCccchhhh
Q 013813 320 LENPALFAGFR 330 (436)
Q Consensus 320 l~nP~lf~~i~ 330 (436)
+.-++..+.++
T Consensus 208 l~a~d~~~~~~ 218 (224)
T d1hg3a_ 208 TKAKDPEKAIW 218 (224)
T ss_dssp HTCSSHHHHHH
T ss_pred ecCcCHHHHHH
Confidence 98777665443
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=96.51 E-value=0.0084 Score=54.03 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHH----HHHHHhh-CC
Q 013813 212 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA----IKAVKNA-LR 286 (436)
Q Consensus 212 ~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~----i~~ik~~-~~ 286 (436)
.+.+.++..++. ++.+.+-+ |.. ++ ++...+.+.+.|.+-+.-.-+......+.+.+. ++.+++. .+
T Consensus 102 e~~~~~~~~~~~-gl~~ivcv--ge~-~~----~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~ 173 (226)
T d1w0ma_ 102 DLARLVAKAKSL-GLDVVVCA--PDP-RT----SLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPE 173 (226)
T ss_dssp HHHHHHHHHHHT-TCEEEEEE--SSH-HH----HHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHc-CCEEEEec--Cch-HH----hhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCC
Confidence 355555555433 55554542 332 22 344556788888775543322111101222232 3334443 37
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+||++.|||.+.+++..+++. |+|||.||++.+.-++.|..+.
T Consensus 174 i~vlygGgV~~~n~~~~~~~~-g~dGvLVGsA~l~a~d~~~~i~ 216 (226)
T d1w0ma_ 174 VSVITGAGIESGDDVAAALRL-GTRGVLLASAAVKAKDPYAKIV 216 (226)
T ss_dssp SEEEEESSCCSHHHHHHHHHT-TCSEEEECHHHHTCSSHHHHHH
T ss_pred ceEEEecCcCChHHHHHHhcC-CCCEEEechheecCCCHHHHHH
Confidence 999999999999999999886 9999999999998888777554
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.49 E-value=0.011 Score=53.32 Aligned_cols=130 Identities=14% Similarity=0.184 Sum_probs=93.2
Q ss_pred CCEEEEec-CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 158 RPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~-g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
.|+...++ ..+++.+.+.++ .++.|++.+-+-.| | + .|.+.+. ++++.+ ++.+.|-...
T Consensus 5 v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg-~---------~----~D~~~v~----~ir~~~~d~~l~vD~n~ 66 (243)
T d1r0ma1 5 VEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK-P---------G----WDVQPVR----ATREAFPDIRLTVDANS 66 (243)
T ss_dssp EEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T---------T----BSHHHHH----HHHHHCTTSCEEEECTT
T ss_pred EEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcC-c---------c----hhHHHHH----HHHHhccCceEEEeccc
Confidence 34556654 467888877775 55779999988654 1 1 2444444 445444 4566677666
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++..++..+ +.+++.++.+| ++.-. +.||+..+++++.+++||.+.-.+.+..++.++++...+|.|+
T Consensus 67 ~~~~~~a~~~-~~l~~~~~~~i-------EeP~~---~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~ 135 (243)
T d1r0ma1 67 AYTLADAGRL-RQLDEYDLTYI-------EQPLA---WDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVIN 135 (243)
T ss_dssp CCCGGGHHHH-HTTGGGCCSCE-------ECCSC---TTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEE
T ss_pred cCchHHHHHh-hhhhhccchhh-------hhhcc---ccchHHHHHHhhcCCcccccccchhhhhhhhhhhhccccccee
Confidence 7888888775 67788887765 11111 3478889999999999999999999999999999987899887
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 136 ~d 137 (243)
T d1r0ma1 136 LK 137 (243)
T ss_dssp EC
T ss_pred cc
Confidence 64
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=96.46 E-value=0.017 Score=52.99 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=100.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
.+.|+.--=|--|+-++.+|. ..|+|+|=|-..| + +.+.+.++++... ..++-+.|-+.
T Consensus 100 ~~~PiLrKDFIid~~QI~ea~---~~GADaiLLI~~~--------------L-~~~~l~~l~~~a~-~lgle~LvEvh-- 158 (251)
T d1i4na_ 100 TCRPILAKDFYIDTVQVKLAS---SVGADAILIIARI--------------L-TAEQIKEIYEAAE-ELGMDSLVEVH-- 158 (251)
T ss_dssp CCSCEEEECCCCSTHHHHHHH---HTTCSEEEEEGGG--------------S-CHHHHHHHHHHHH-TTTCEEEEEEC--
T ss_pred ccCchhhhhhhhCHHHHHHHH---hhccceEEeeccc--------------c-cHHHHHHHHHHHH-HhCCeeecccC--
Confidence 457877766666777766654 3589999998532 2 3456777777653 56777777753
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+..++-+.+...|++.|-|-.|.-... ..|.+...++...+ +..+|+-+||.+++|++. ++. |+|+|
T Consensus 159 ----~~~El~~al~~~~a~iiGINnRdL~t~-----~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~-l~~-G~dav 227 (251)
T d1i4na_ 159 ----SREDLEKVFSVIRPKIIGINTRDLDTF-----EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKD-LRG-KVNAV 227 (251)
T ss_dssp ----SHHHHHHHHTTCCCSEEEEECBCTTTC-----CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHH-HTT-TCSEE
T ss_pred ----CHHHHHHHhcccccceeeeeecchhcc-----chhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHH-HHh-CCCEE
Confidence 223444555667899999988865422 45666667777665 688999999999999976 454 99999
Q ss_pred eeehHHhhCCccch
Q 013813 314 LSAESLLENPALFA 327 (436)
Q Consensus 314 mIGRgal~nP~lf~ 327 (436)
.||.++|..+..-.
T Consensus 228 LIG~sLm~~~~p~~ 241 (251)
T d1i4na_ 228 LVGTSIMKAENPRR 241 (251)
T ss_dssp EECHHHHHCSSHHH
T ss_pred EEChHHhCCCCHHH
Confidence 99999999776443
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.41 E-value=0.018 Score=51.78 Aligned_cols=148 Identities=7% Similarity=0.102 Sum_probs=96.7
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
.+.|+-+-|+..+|+.+... .+..|+|.|-+|.-+- ...+.+++..+++. ++-+.+-+...
T Consensus 58 ~~~~~dvHLMv~~p~~~i~~--~~~~g~~~I~~H~E~~----------------~~~~~~~i~~i~~~-g~~~Glal~p~ 118 (220)
T d1h1ya_ 58 TKAYLDCHLMVTNPSDYVEP--LAKAGASGFTFHIEVS----------------RDNWQELIQSIKAK-GMRPGVSLRPG 118 (220)
T ss_dssp CCSEEEEEEESSCGGGGHHH--HHHHTCSEEEEEGGGC----------------TTTHHHHHHHHHHT-TCEEEEEECTT
T ss_pred cchhhhhHHHhcchhhhhHH--hhhcccceeeeccccc----------------chhHHHHHHHHHHc-CCCcceeeccc
Confidence 56788999999999987654 4567899999996410 01234556665443 44555555565
Q ss_pred CChhhHHHHHHHHHHc-CccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 236 PNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 236 ~~~~d~~~~ak~le~a-G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
...+....+.. .. -+|.+.+..-..........+.-++-|+++++. .+++|..-|||+. +.+..+.+. |||.+
T Consensus 119 t~~~~~~~~l~---~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~-~~i~~l~~a-Gad~~ 193 (220)
T d1h1ya_ 119 TPVEEVFPLVE---AENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASA-GANCI 193 (220)
T ss_dssp SCGGGGHHHHH---SSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHH-TCCEE
T ss_pred cchhHHHHHHh---cccccceEEEEecCCCCcccccchhhhHHHHHHHhcCCCceEEEEecCCH-HHHHHHHHC-CCCEE
Confidence 55555444432 32 368787754432211111113346778888775 4799999999986 678887775 99999
Q ss_pred eeehHHhhCCccch
Q 013813 314 LSAESLLENPALFA 327 (436)
Q Consensus 314 mIGRgal~nP~lf~ 327 (436)
++|++++.++..-.
T Consensus 194 V~GS~if~~~d~~~ 207 (220)
T d1h1ya_ 194 VAGSSIFGAAEPGE 207 (220)
T ss_dssp EESHHHHTSSCHHH
T ss_pred EECHHHHCCCCHHH
Confidence 99999988776543
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.26 E-value=0.045 Score=48.34 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=57.8
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 239 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~ 239 (436)
+++-|=..+.++..+.+..+.++.+.|++++ |.- .+ +| + +.++++++..+.+|..-+.+.+-..
T Consensus 5 i~lAlD~~~~~~a~~l~~~~~~~v~~iKig~--~l~--~~--~G------~----~~v~~l~~~~~~~i~~D~K~~DIg~ 68 (212)
T d1km4a_ 5 LILAMDLMNRDDALRVTGEVREYIDTVKIGY--PLV--LS--EG------M----DIIAEFRKRFGCRIIADFAVADIPE 68 (212)
T ss_dssp EEEEECCSSHHHHHHHHHHHTTTCSEEEEEH--HHH--HH--HC------T----HHHHHHHHHHCCEEEEEEEECSCHH
T ss_pred eEEEecCCCHHHHHHHHHHhCCCCcEEEECH--HHH--Hh--cC------H----HHHHHHHHhcccceehhhhhhcccc
Confidence 6666666778888888888888899999984 221 11 23 2 2445566666778776555653222
Q ss_pred hHHHHHHHHHHcCccEEEeccCc
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRT 262 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt 262 (436)
.....++.+.++|+|.+|||+-.
T Consensus 69 t~~~~~~~~~~~gad~~TVh~~~ 91 (212)
T d1km4a_ 69 TNEKICRATFKAGADAIIVHGFP 91 (212)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHhHhhhccccccEEEEeccC
Confidence 33456777888999999999754
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=96.23 E-value=0.0088 Score=53.94 Aligned_cols=150 Identities=17% Similarity=0.275 Sum_probs=90.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHc-CCCcEE--EEecC--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 159 PLFVQFCANDPEILLNAARRVE-PYCDYV--DINLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~-~g~D~I--dLN~G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
-+..+|...|...+.+..+.++ .|+|.| ||--| +|.. .+| + ++++.++..+++|+-|=+=
T Consensus 4 ~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-----t~~------~----~~~~~i~~~t~~~~dvHLM 68 (221)
T d1tqja_ 4 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI-----TIG------P----LIVDAIRPLTKKTLDVHLM 68 (221)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB-----CBC------H----HHHHHHGGGCCSEEEEEEE
T ss_pred EEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCcc-----ccC------c----HhHHhhhhccCcceeeeEE
Confidence 4678899999999999888774 578864 44434 3331 122 2 3566677666676665532
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccC----------------------------cccc-----------------cCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGR----------------------------TRDE-----------------KDG 268 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgR----------------------------t~~~-----------------~~~ 268 (436)
. .++..+++.+.++|++.|++|.- |.-. ..+
T Consensus 69 v----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~V~pG 144 (221)
T d1tqja_ 69 I----VEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPG 144 (221)
T ss_dssp S----SSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC-
T ss_pred E----eCHHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEEecCC
Confidence 2 12233455555666666666532 1100 011
Q ss_pred CCC----ccCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 269 KKF----RADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 269 ~~g----~ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+.| +.-++-++++++. .++.|..-|||+. +.+..+.+. |||.+++|++++.+++.-..+
T Consensus 145 ~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~-Gad~~V~GS~if~~~d~~~~i 212 (221)
T d1tqja_ 145 FGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEA-GANAIVAGSAVFNAPNYAEAI 212 (221)
T ss_dssp ---CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHH-TCCEEEESHHHHTSSCHHHHH
T ss_pred CCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHc-CCCEEEEChHHhCCCCHHHHH
Confidence 111 1224555555442 4688999999985 577777775 999999999999888754433
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.10 E-value=0.028 Score=50.30 Aligned_cols=132 Identities=17% Similarity=0.253 Sum_probs=92.3
Q ss_pred CCEEEEec-CCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 158 RPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~-g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
.|+.+.++ +.+++++++.++ .++.|+..+-|..| | ..|.+.+. ++++.+ ++.+.|-...
T Consensus 5 ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg-~-------------~~D~~~v~----~ir~~~~d~~l~vDaN~ 66 (241)
T d1wuea1 5 IPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-P-------------GYDVEPVA----LIRQHFPNLPLMVDANS 66 (241)
T ss_dssp EECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSHHHHH----HHHHHCTTSCEEEECTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcC-c-------------cHHHHHHH----HHHHhccccceeecccc
Confidence 45556653 357777776664 56779999998765 1 13444444 444443 4666676666
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.+++..+.+ +.+.++.+| ++.-. .-+++..+++++..++||.+.-.+.+.+++..+++...+|.|+
T Consensus 67 ~~~~~~a~~~~~-~~~~~i~~i-------EeP~~---~~~~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~ 135 (241)
T d1wuea1 67 AYTLADLPQLQR-LDHYQLAMI-------EQPFA---ADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSIN 135 (241)
T ss_dssp CCCGGGHHHHHG-GGGSCCSCE-------ECCSC---TTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEE
T ss_pred cCCHHHhhhhhh-hhhhhhhhh-------cCccc---ccchhhhhhhhcccccccccCcccccchhhhhhhhhhhhhhhc
Confidence 788888877644 566776654 21111 2467889999999999999999999999999999987799998
Q ss_pred eehH
Q 013813 315 SAES 318 (436)
Q Consensus 315 IGRg 318 (436)
+--+
T Consensus 136 ~d~~ 139 (241)
T d1wuea1 136 LKIP 139 (241)
T ss_dssp ECHH
T ss_pred cccc
Confidence 7643
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=96.03 E-value=0.04 Score=50.68 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=84.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+++|=+|. ..|-...-..+.-.++++.+.+.+ ++||.+-+- +.+..+++++
T Consensus 22 D~~~~~~~i~~l~~~Gv~gl~~~G----------~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~~i~~ 90 (292)
T d1xkya1 22 DFAKTTKLVNYLIDNGTTAIVVGG----------TTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHASIDL 90 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECe----------EccchhhCCHHHHHHHHHHHHHHhCCCceEEEecC-cccHHHHHHH
Confidence 56677777764 467999999883 344444445566666666665554 578888742 2456889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE-c-----cCCCCHHHHHHHHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-N-----GNVRHMEDVQKCLEE 307 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia-n-----GGI~s~eda~~~l~~ 307 (436)
++.++++|+|++.+..-... ..+...-+++.+.+.+.+++||+. | |.-.+.+.+.++.+.
T Consensus 91 a~~a~~~Gad~ilv~pP~~~---~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~~ 156 (292)
T d1xkya1 91 TKKATEVGVDAVMLVAPYYN---KPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEI 156 (292)
T ss_dssp HHHHHHTTCSEEEEECCCSS---CCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTS
T ss_pred HHHHHHcCCCEEEECCCCCC---CCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhccC
Confidence 99999999999988643211 111122356778888888999875 2 445677777776543
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.036 Score=52.13 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHH-cC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAARRV-EP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA~~v-~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~ 243 (436)
-+|+.+++-|+.+ +. ||..+-|-.|- ..++.-.+.|+++++.+ +..+.|-..-+++.+++++
T Consensus 46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~ 110 (309)
T d1jdfa1 46 MTPDAVVRLAEAAYEKYGFNDFKLKGGV---------------LAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIK 110 (309)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSS---------------SCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEECCC---------------CCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHH
Confidence 4688888888654 44 99999887541 13444556677777766 4566666666788999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+++.++ .++.+|- ++..........+..+++++.+++||.++-.+.+..++.++++...+|.++.
T Consensus 111 ~~~~le-~~l~w~E------EPv~~~d~~~~~~~l~~lr~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~ 175 (309)
T d1jdfa1 111 IGKYLK-GSLAYAE------DPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLA 175 (309)
T ss_dssp HHHHTT-TTCSCEE------SCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHHHHHHHHHTCCSEEBC
T ss_pred HHHHHh-hcchhhh------hhcccCcchhhHHHHHHhhcccccceecCcccchhhhhhhhhhhccceeeec
Confidence 999886 4666651 1110000012356788999999999999999999999999999877886654
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.061 Score=49.42 Aligned_cols=126 Identities=15% Similarity=0.088 Sum_probs=84.7
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++ +++.|+++|=++. ..|-...-..+.=.++++.+.+.+ ++||.+-+- ..+..+++++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~v~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~st~~ai~~ 88 (295)
T d1o5ka_ 20 DLESYERLVRYQLENGVNALIVLG----------TTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEKTLKL 88 (295)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------eccchhhCCHHHHHHHhhhhccccccCCceEeecc-cccHHHHHHH
Confidence 5566777775 4567999988872 234333334444456666665554 588988842 2456789999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE------ccCCCCHHHHHHHHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA------NGNVRHMEDVQKCLEE 307 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia------nGGI~s~eda~~~l~~ 307 (436)
++.++++|+|++.+....... .+...-+++.+.|.+.+++||+. .|.-.+.+.+.++++.
T Consensus 89 a~~A~~~Gad~v~v~pP~y~~---~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~ 154 (295)
T d1o5ka_ 89 VKQAEKLGANGVLVVTPYYNK---PTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAAD 154 (295)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhh
Confidence 999999999999987643211 11112256778888888999864 2667788888887764
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.87 E-value=0.055 Score=50.02 Aligned_cols=133 Identities=17% Similarity=0.084 Sum_probs=84.2
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++ .++.|+++|=++. ..|-...-..+.-.++++.+.+.+ .+|+.+-+ .+.+.++++++
T Consensus 26 D~~~l~~~i~~li~~Gv~Gi~v~G----------~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~-~~~s~~~~i~~ 94 (296)
T d1xxxa1 26 DTATAARLANHLVDQGCDGLVVSG----------TTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA-GTYDTAHSIRL 94 (296)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS----------TTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEEC-CCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------eccchhhCCHHHHHHHHHHHHHHhccccceEecc-ccchhHHHHHH
Confidence 4566666665 4577999998873 234333334444455666655544 47888774 23467899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc------cCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN------GNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian------GGI~s~eda~~~l~~tGaDgVm 314 (436)
++.+++.|+|++.+..-.... .+...-+++.++|.+.+++||+.- |-..+++.++++.+...+-++-
T Consensus 95 a~~a~~~Gad~v~i~~P~~~~---~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~~p~i~giK 167 (296)
T d1xxxa1 95 AKACAAEGAHGLLVVTPYYSK---PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVK 167 (296)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHhcCCeEEEEeccCCC---CCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHhcCCCCeeeec
Confidence 999999999999886543221 111122466788888889998752 4446777777766543444443
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.07 Score=47.71 Aligned_cols=88 Identities=13% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+.|++|-|=-.+.+++.+.++.+.+..++|.++. |.- .. +| .++++.+++ .+.+|+.-+-+.+
T Consensus 3 ~~~iivALD~~~~~eal~i~~~l~~~i~~iKiG~--~l~--~~--~G----------~~~i~~l~~-~~~~if~D~K~~D 65 (231)
T d1eixa_ 3 NSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGK--EMF--TL--FG----------PQFVRELQQ-RGFDIFLDLKFHD 65 (231)
T ss_dssp CCCEEEEECCSSHHHHHHHHTTSCTTTCEEEEEH--HHH--HH--HH----------HHHHHHHHH-TTCCEEEEEEECS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhCCcceEEEECH--HHH--hh--cC----------HHHHHHHHh-cCchhhHhhHhhc
Confidence 5788988877778777777776666789999973 321 00 22 345556654 4667776655544
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccC
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgR 261 (436)
-.......++.+.+.|+++++||+-
T Consensus 66 I~nt~~~~~~~~~~~~~~~~tvh~~ 90 (231)
T d1eixa_ 66 IPNTAAHAVAAAADLGVWMVNVHAS 90 (231)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBGG
T ss_pred CcHHHHHHHHhhhcccceEEEEecc
Confidence 3233345567788889999999964
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.02 Score=51.66 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=39.6
Q ss_pred CHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 274 DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 274 d~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
+-+.+..+++.. ++|++..+||+|+++++++. . +||||++|.++..++
T Consensus 168 ~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~-~ADgVVVGSAiv~~i 216 (229)
T d1viza_ 168 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-E-HADVIVVGNAVYEDF 216 (229)
T ss_dssp CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-T-TCSEEEECTHHHHCH
T ss_pred cchhHHHHHhhccCcceEEEcccCCHHHHHHHH-c-CCCEEEECHHHHhhH
Confidence 346677777665 69999999999999999976 4 899999999987654
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=95.73 E-value=0.055 Score=48.31 Aligned_cols=129 Identities=9% Similarity=0.130 Sum_probs=80.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
.+++.=|.+.++++..+.++.+ +.|+..|||-+-.|.. .++++.+++.. ++-|.+. .=
T Consensus 14 ~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a------------------~~~I~~l~~~~p~~~vGaG--TV 73 (212)
T d1vhca_ 14 LKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAA------------------ADAIRLLRANRPDFLIAAG--TV 73 (212)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTH------------------HHHHHHHHHHCTTCEEEEE--SC
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------HHHHHHHHhcCCCceEeee--ec
Confidence 5688888999999999999865 6689999999755431 23444444333 2223322 11
Q ss_pred CChhhHHHHHHHHHHcCccEE-----------------------------------------EeccCcccccCCCCCccC
Q 013813 236 PNLQDTIKYAKMLEDAGCSLL-----------------------------------------AVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I-----------------------------------------~VHgRt~~~~~~~~g~ad 274 (436)
.+.+ -++.+.++|++++ -+..-.. .+ -
T Consensus 74 ~~~~----~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~------~g--G 141 (212)
T d1vhca_ 74 LTAE----QVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEA------SG--G 141 (212)
T ss_dssp CSHH----HHHHHHHHTCSEEECSSCCHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTT------TT--H
T ss_pred ccHH----HHHHHHhhCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEEccccc------cc--h
Confidence 1111 1333344455444 3322110 00 1
Q ss_pred HHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 275 WNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 275 ~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
..+++.++.- .+++++..|||. .+++.++|+. |+.++.+|..+.
T Consensus 142 ~~~lkal~~p~p~~~~~ptGGV~-~~N~~~yl~~-g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 142 VKMIKALLGPYAQLQIMPTGGIG-LHNIRDYLAI-PNIVACGGSWFV 186 (212)
T ss_dssp HHHHHHHHTTTTTCEEEEBSSCC-TTTHHHHHTS-TTBCCEEECGGG
T ss_pred HHHHHHHhccccCCeEEecCCCC-HHHHHHHHhC-CCEEEEEChhhC
Confidence 3667777764 379999999996 5899999986 888888886554
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=95.72 E-value=0.14 Score=46.97 Aligned_cols=168 Identities=19% Similarity=0.232 Sum_probs=102.5
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCcccchhhccC---h----h---hhhhhhhccCCCCCEEEEe-c---CCCHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTES---E----K---YRNEEFATCKEDRPLFVQF-C---ANDPEILLNA 175 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~---~----~---~~~~~~~~~~~e~plivQL-~---g~d~e~~~~A 175 (436)
|...-|.+|-.++.+.|.|++...--....+... . . +-...+.......-+++-+ + ....++..++
T Consensus 19 ~lTayd~~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a 98 (260)
T d1o66a_ 19 MLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAA 98 (260)
T ss_dssp EEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHH
T ss_pred EEeCCCHHHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHH
Confidence 5567889999999999999877542111001000 0 0 0001122223333445554 2 3456777777
Q ss_pred HH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC--------------C--Ch
Q 013813 176 AR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--------------P--NL 238 (436)
Q Consensus 176 A~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg--------------~--~~ 238 (436)
++ +++.|+|+|-|-.|.- ..++++++.+ .++||.-=+-+- . +.
T Consensus 99 ~~~~~~~gadavk~eg~~~-------------------~~~~i~~l~~-~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e~ 158 (260)
T d1o66a_ 99 AAELMAAGAHMVKLEGGVW-------------------MAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGRGGKA 158 (260)
T ss_dssp HHHHHHTTCSEEEEECSGG-------------------GHHHHHHHHH-TTCCEEEEEESCGGGTTC-----------CH
T ss_pred HHHHHHhhhhhccccchhh-------------------hhHHHHHHHH-cCCeeEeecccccchheecCcceeccccchh
Confidence 75 4567999999984321 2344555543 378888765441 1 22
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee-eeh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL-SAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm-IGR 317 (436)
...++-|+.++++||..|.+-+.. -+..++|.+.+++|+|+-|.= .+|||-+ +.-
T Consensus 159 ~~l~~~a~~le~AGa~~ivlE~Vp------------~~va~~It~~~~iptIgIGaG------------~~cDGQvLv~~ 214 (260)
T d1o66a_ 159 QALLNDAKAHDDAGAAVVLMECVL------------AELAKKVTETVSCPTIGIGAG------------ADCDGQVLVMH 214 (260)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC------------HHHHHHHHHHCSSCEEEESSC------------SCSSEEEECHH
T ss_pred HHHHHHHHHHHHhhhhehhhhhcc------------HHHHHHHHhhhcceeeeccCC------------CCCCeeEEehH
Confidence 346677899999999999886442 256788999999999988842 3688844 444
Q ss_pred HHhh
Q 013813 318 SLLE 321 (436)
Q Consensus 318 gal~ 321 (436)
-+|+
T Consensus 215 DllG 218 (260)
T d1o66a_ 215 DMLG 218 (260)
T ss_dssp HHTT
T ss_pred HhhC
Confidence 4555
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=95.72 E-value=0.021 Score=50.51 Aligned_cols=141 Identities=17% Similarity=0.185 Sum_probs=86.4
Q ss_pred EEecCCC-HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhh
Q 013813 162 VQFCAND-PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD 240 (436)
Q Consensus 162 vQL~g~d-~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d 240 (436)
|.|||-. +++...+ .+.|+|+|-+.+ .|.. .| .=+++.+.+|++.+.... ..|.+-...+.+
T Consensus 4 IKICGit~~~da~~~---~~~gad~iGfI~-~~~S--pR-------~Vs~~~a~~i~~~~~~~~---~~V~V~v~~~~~- 66 (205)
T d1nsja_ 4 VKICGITNLEDALFS---VESGADAVGFVF-YPKS--KR-------YISPEDARRISVELPPFV---FRVGVFVNEEPE- 66 (205)
T ss_dssp EEECCCCSHHHHHHH---HHHTCSEEEEEC-CTTC--TT-------BCCHHHHHHHHHHSCSSS---EEEEEESSCCHH-
T ss_pred EEEcCCCcHHHHHHH---HhCCCCEEeEec-cCCC--CC-------ccCHHHHHHHHhhhcccc---eeeccccccHHH-
Confidence 6788854 4443333 245899999987 4431 11 114677788877765332 223222323333
Q ss_pred HHHHHHHHHHcCccEEEeccCcc-----------------------------------------cccCCCCC-ccCHHHH
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTR-----------------------------------------DEKDGKKF-RADWNAI 278 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~-----------------------------------------~~~~~~~g-~ad~~~i 278 (436)
++.+.++..+.+.+.+||-.. ....+++| ..||+.+
T Consensus 67 --~i~~~~~~~~~~~vQlhg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~ 144 (205)
T d1nsja_ 67 --KILDVASYVQLNAVQLHGEEPIELCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLI 144 (205)
T ss_dssp --HHHHHHHHHTCSEEEECSCCCHHHHHHHHTTSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGT
T ss_pred --HHHhhhhhccccchhccchhhHHHHhhcccceeeeeeccccchHHHHHHhhcccceeeeccccccCCCCCcccchhhc
Confidence 344555677888888887431 00112222 4689887
Q ss_pred HHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 279 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 279 ~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
+.++.. ..|++..|||. ++.+.++++..+..||=+.+|.=..|
T Consensus 145 ~~~~~~-~~~~~LAGGl~-~~Nv~~ai~~~~p~gvDvsSgvE~~~ 187 (205)
T d1nsja_ 145 LPYRDR-FRYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGVEAFP 187 (205)
T ss_dssp GGGGGG-SSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGEEET
T ss_pred ccchhc-ccceeeecCCC-HHHHHHHHHHhCCCEEEEcCcccCCC
Confidence 776553 35899999997 68898888877899998888774333
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.52 E-value=0.1 Score=46.55 Aligned_cols=154 Identities=9% Similarity=0.068 Sum_probs=95.1
Q ss_pred hhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE
Q 013813 151 FATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 151 ~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV 230 (436)
+....++.|+=+.|+..+|+.+.+.. ...+++.|-++.. ..+.....++++.+++. ++-+.+
T Consensus 55 i~~~~~~~~~dvHLMv~~P~~~i~~~--~~~~~~~i~~~~~---------------~~~~~~~~~~i~~i~~~-g~~~Gi 116 (221)
T d1tqxa_ 55 LKKYTKSIFFDVHLMVEYPEKYVPLL--KTSNQLTFHFEAL---------------NEDTERCIQLAKEIRDN-NLWCGI 116 (221)
T ss_dssp HGGGCSSCEEEEEEESSCGGGGGGGC--TTSSEEEEEGGGG---------------TTCHHHHHHHHHHHHTT-TCEEEE
T ss_pred hhhcCCchhhhhhHHhhhhhhhhhhh--hhcCceeEEeehh---------------ccccchhhHHHHHHHhc-CCeEEE
Confidence 33334567899999999998766422 2334443333321 12344556667776644 555555
Q ss_pred EeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tG 309 (436)
-+....+.+... ..+....+|.|.+.+.........-.+.-++-|+++++. .++.|..-|||+ .+.+..+.+. |
T Consensus 117 al~p~t~~~~~~---~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn-~~~i~~l~~a-G 191 (221)
T d1tqxa_ 117 SIKPKTDVQKLV---PILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISASH-G 191 (221)
T ss_dssp EECTTSCGGGGH---HHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHHH-T
T ss_pred eeccccccccch---hhcccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEEEcccC-HHhHHHHHHc-C
Confidence 555554444433 233445688887655433211111113456778888776 368899999997 4788888876 9
Q ss_pred cceeeeehHHhhCCccch
Q 013813 310 CEGVLSAESLLENPALFA 327 (436)
Q Consensus 310 aDgVmIGRgal~nP~lf~ 327 (436)
||.+++|++++.+++.-.
T Consensus 192 ad~iV~GS~if~~~d~~~ 209 (221)
T d1tqxa_ 192 ANIIVAGTSIFNAEDPKY 209 (221)
T ss_dssp CCEEEESHHHHTCSSHHH
T ss_pred CCEEEEChHHHCCCCHHH
Confidence 999999999988776533
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=95.47 E-value=0.052 Score=48.46 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=72.9
Q ss_pred HHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 214 ~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
.++++.+++. ++..=+|. .+.+++..+++.+.+.|+..|-|.-|+.. .++.|+.+++...=-+++.|
T Consensus 5 ~~~~~~l~~~---~iipvlr~-~~~~~~~~~~~al~~~Gi~~iEitl~~~~---------a~~~I~~l~~~~p~~~vGaG 71 (212)
T d1vhca_ 5 QQIIEKLREL---KIVPVIAL-DNADDILPLADTLAKNGLSVAEITFRSEA---------AADAIRLLRANRPDFLIAAG 71 (212)
T ss_dssp HHHHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTSTT---------HHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHC---CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHhcCCCceEeee
Confidence 3555665543 34334444 45689999999999999999999888632 36889988876543689999
Q ss_pred CCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 294 NVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 294 GI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
-|.|.++++++.+. ||+.++.= --|+.++....
T Consensus 72 TV~~~~~~~~a~~a-Ga~FivSP---~~~~~v~~~a~ 104 (212)
T d1vhca_ 72 TVLTAEQVVLAKSS-GADFVVTP---GLNPKIVKLCQ 104 (212)
T ss_dssp SCCSHHHHHHHHHH-TCSEEECS---SCCHHHHHHHH
T ss_pred ecccHHHHHHHHhh-CCcEEECC---CCCHHHHHHHH
Confidence 99999999999987 99998732 14555554443
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.02 Score=50.60 Aligned_cols=128 Identities=11% Similarity=0.098 Sum_probs=87.9
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
..+..+.|.-.+|+++++-|+ .++.||..+-|-.|=. . -.+.++++++.+ ++.+.+-..-
T Consensus 5 ~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~~--------------~----d~~~i~~ir~~~~d~~l~vDaN~ 66 (208)
T d1jpdx1 5 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--------------L----ISERMVAIRTAVPDATLIVDANE 66 (208)
T ss_dssp EEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS--------------C----HHHHHHHHHHHCTTSEEEEECTT
T ss_pred ceeeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCCC--------------c----HHHHHHHHHHhccccEEEEeccc
Confidence 344557777889999988885 5577999999875410 1 234556666665 4566666666
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+|+.++++.+++.+++.++.+|- ++.. ..|++..+++++ .+||.+.-++.+..+++++. ..+|.++
T Consensus 67 ~~s~~~A~~~~~~l~~~~l~~iE------eP~~----~~d~~~~~~l~~--~~pi~~~E~~~~~~~~~~l~--~~~d~~~ 132 (208)
T d1jpdx1 67 SWRAEGLAARCQLLADLGVAMLE------QPLP----AQDDAALENFIH--PLPICADESCHTRSNLKALK--GRYEMVN 132 (208)
T ss_dssp CCCSTTHHHHHHHHHHTTCCEEE------CCSC----TTSCGGGGSSCC--SSCEEESTTCSSGGGHHHHB--TTBSEEE
T ss_pred ccchhHHHHHHHHHHhccccccC------ccCC----ccCHHHHHhhhc--ccceecCCCcCCHHHHHHHh--hccCEEE
Confidence 78889999999999999988872 1100 123333344433 68999999999999998863 3577766
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 133 ~d 134 (208)
T d1jpdx1 133 IK 134 (208)
T ss_dssp EC
T ss_pred eC
Confidence 54
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.37 E-value=0.0083 Score=54.16 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=38.0
Q ss_pred CHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 274 DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 274 d~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+.+.+..+++.+ ++||+..+||+|+++++++.+ +||||+||.++..
T Consensus 174 ~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~--~ADgvIVGSaive 220 (231)
T d2f6ua1 174 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR--YADTIIVGNVIYE 220 (231)
T ss_dssp CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH--HSSEEEECHHHHH
T ss_pred hhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh--cCCEEEEChHHhc
Confidence 446666676665 699999999999999999775 6999999998754
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=95.33 E-value=0.083 Score=48.24 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=94.1
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHH-Hc----CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE
Q 013813 155 KEDRPLFVQFCANDPEILLNAARR-VE----PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 229 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~~-v~----~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs 229 (436)
....|+.-|.+++..+....++.. ++ .++..+..++| ..|..+...++.+.+-|++++...+.-+.
T Consensus 4 ~~~VP~~g~~g~~~~~~~e~mI~~~a~~~~~~~~~~lk~kvG---------~~g~~~~e~~~~~~~rI~~~r~~~G~~~~ 74 (251)
T d1kkoa1 4 PEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLG---------FKGEKLREYVRWLSDRILSLRSSPRYHPT 74 (251)
T ss_dssp CCCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCCCCCC---------TTSHHHHHHHHHHHHHHHHHCSSTTCCCE
T ss_pred CCCcccccccCCCcccchHHHHHhhhHHHHHHHHHHHHHHhC---------CCCCCcHHHHHHHHHHHHHHHhCcCCCcc
Confidence 345788888888887754444421 11 12333333322 22444544566666777777777754444
Q ss_pred EEecc--------CCChhhHHHHHHHHHHcCccEE-EeccCcccccC-CCCCccCHHHHHHHHhh-----CCCcEEEccC
Q 013813 230 CKIRV--------FPNLQDTIKYAKMLEDAGCSLL-AVHGRTRDEKD-GKKFRADWNAIKAVKNA-----LRIPVLANGN 294 (436)
Q Consensus 230 VKiRl--------g~~~~d~~~~ak~le~aG~d~I-~VHgRt~~~~~-~~~g~ad~~~i~~ik~~-----~~iPVianGG 294 (436)
+.+-. +++.+++.++.+.+.+.+.++- .| ++.. ....+.||+..+++++. .++||.+.=.
T Consensus 75 i~iD~~~~~~~~~~~~~~~ai~~l~~L~~~~~~~~l~I-----EqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~ 149 (251)
T d1kkoa1 75 LHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEW 149 (251)
T ss_dssp EEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTT
T ss_pred eeeccccccccccCCCHHHHHHHHHHHHHhcCCCceee-----cCCcccccchHHHHHHHHHHHHHhccCCCceEeccce
Confidence 44432 5788888999999988876652 22 2111 11113467777777665 4699999999
Q ss_pred CCCHHHHHHHHHhcCcceeeee
Q 013813 295 VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIG 316 (436)
+.|.+|++++++...||.|.+=
T Consensus 150 ~~t~~d~~~~i~~~a~d~v~iK 171 (251)
T d1kkoa1 150 CNTYQDIVDFTDAGSCHMVQIK 171 (251)
T ss_dssp CCSHHHHHHHHHTTCCSEEEEC
T ss_pred eCCHHHHHHHHHhCCccceecc
Confidence 9999999999998889999865
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.21 E-value=0.06 Score=48.16 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=67.0
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
||.-=+|. .+.+++.++++.+.+.|+..|-|.-|+. ..++.|+.+++...=-+++.|.|.+.++++++++
T Consensus 18 ~iipvl~~-~~~~~a~~~~~al~~~Gi~~iEitl~~p---------~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~ 87 (216)
T d1mxsa_ 18 RILPVITI-AREEDILPLADALAAGGIRTLEVTLRSQ---------HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEA 87 (216)
T ss_dssp SEEEEECC-SCGGGHHHHHHHHHHTTCCEEEEESSST---------HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHH
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHh
Confidence 34444444 3568999999999999999999988863 2368899988875436899999999999999999
Q ss_pred hcCcceeeeehHHhhCCccchhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i 329 (436)
. ||+.++.= + .|+.+....
T Consensus 88 a-Ga~FivsP-~--~~~~v~~~a 106 (216)
T d1mxsa_ 88 A-GAQFVVTP-G--ITEDILEAG 106 (216)
T ss_dssp H-TCSSEECS-S--CCHHHHHHH
T ss_pred C-CCCEEECC-C--CcHHHHHHH
Confidence 7 99987631 1 445555433
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.18 Score=46.26 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=102.1
Q ss_pred HHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeC----ccc---chhhccChhh---hhhhhhccCCCCCEEEEec-C
Q 013813 98 TKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTP----MLH---SRIFTESEKY---RNEEFATCKEDRPLFVQFC-A 166 (436)
Q Consensus 98 ~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Te----mis---a~~l~~~~~~---~~~~~~~~~~e~plivQL~-g 166 (436)
+..|+ ||+ |...-|.+|-.++.+.|+|++... |+. ...+.-.-.. -...+....+..-+++-+- +
T Consensus 11 K~~g~-ki~---~lTayD~~~A~~~~~agvDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~ 86 (262)
T d1m3ua_ 11 KQEKK-RFA---TITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFM 86 (262)
T ss_dssp HHHTC-CEE---EEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTT
T ss_pred HhCCC-cEE---EEEcCCHHHHHHHHHCCCCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeEeccccc
Confidence 43444 454 678889999999999999987644 110 0000000000 0001111112222222221 1
Q ss_pred --CCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc---------
Q 013813 167 --NDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--------- 234 (436)
Q Consensus 167 --~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--------- 234 (436)
.+.++..++| ++++.|+|.|-|-.| . ...++++.+.+. ++||.-=+-+
T Consensus 87 sy~~~~~a~~~a~~l~~~GAdaVKlEgg------------~-------~~~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~G 146 (262)
T d1m3ua_ 87 AYATPEQAFENAATVMRAGANMVKIEGG------------E-------WLVETVQMLTER-AVPVCGHLGLTPQSVNIFG 146 (262)
T ss_dssp SSSSHHHHHHHHHHHHHTTCSEEECCCS------------G-------GGHHHHHHHHHT-TCCEEEEEESCGGGHHHHT
T ss_pred cchhhHHHHHHHHHHHhcCCcEEEeccc------------h-------hHHHHHHHHHHc-CCeEEeehhhchhhhhhcC
Confidence 2334444444 566889999988732 1 123456665533 7899877654
Q ss_pred -----CCChh---hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 235 -----FPNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 235 -----g~~~~---d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
|.+.+ ..++.|+.++++||..|.+-+.. -+..++|.+.++||+|+-|.=
T Consensus 147 G~r~qGkt~~ea~~l~~~a~~le~AGaf~ivlE~vp------------~~va~~It~~~~IPtIGIGAG----------- 203 (262)
T d1m3ua_ 147 GYKVQGRGDEAGDQLLSDALALEAAGAQLLVLECVP------------VELAKRITEALAIPVIGIGAG----------- 203 (262)
T ss_dssp SSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEESCC------------HHHHHHHHHHCSSCEEEESSC-----------
T ss_pred CccccCccHHHHHHHHHHHHHHHhhcceEEEEeccc------------HHHHHHHHhhhcceeEeeccc-----------
Confidence 23333 34667889999999999886442 256788999999999988842
Q ss_pred hcCcceee-eehHHhh
Q 013813 307 ETGCEGVL-SAESLLE 321 (436)
Q Consensus 307 ~tGaDgVm-IGRgal~ 321 (436)
.+|||-+ +.--+|+
T Consensus 204 -~~cDGQvlv~~DilG 218 (262)
T d1m3ua_ 204 -NVTDGQILVMHDAFG 218 (262)
T ss_dssp -TTSSEEEECHHHHTT
T ss_pred -CCCcceEEehhHhhC
Confidence 3688844 4444555
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=0.048 Score=47.90 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=86.1
Q ss_pred EecCC-CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhH
Q 013813 163 QFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDT 241 (436)
Q Consensus 163 QL~g~-d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~ 241 (436)
-|||- +++++..|+ +.|+|+|-+++ +|.. .|. =+++.+.+|++.+. ..+|.|= ...+ .
T Consensus 4 KICGIt~~~d~~~~~---~~gaD~iGfif-~~~S--pR~-------Vs~~~a~~i~~~~~---~~~V~Vf--v~~~---~ 62 (198)
T d1piia1 4 KVCGLTRGQDAKAAY---DAGAIYGGLIF-VATS--PRC-------VNVEQAQEVMAAAP---LQYVGVF--RNHD---I 62 (198)
T ss_dssp EECCCCSHHHHHHHH---HHTCSEEEEEC-CTTC--TTB-------CCHHHHHHHHHHCC---CEEEEEE--SSCC---H
T ss_pred eEcCCCcHHHHHHHH---hCCCCEEEEEc-cCCC--CCC-------cCHHHHHHhhhhcc---cccceee--eccc---h
Confidence 46663 455544444 34899999998 4421 111 15788888877653 1233332 2233 3
Q ss_pred HHHHHHHHHcCccEEEeccCcc----------------------------------------cccCCCCC-ccCHHHHHH
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTR----------------------------------------DEKDGKKF-RADWNAIKA 280 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~----------------------------------------~~~~~~~g-~ad~~~i~~ 280 (436)
.++.+.++..+.+.|.+||... +...+++| ..||+.+.
T Consensus 63 ~~i~~~~~~~~~d~iQlHG~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~~- 141 (198)
T d1piia1 63 ADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLN- 141 (198)
T ss_dssp HHHHHHHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGGT-
T ss_pred hhHHHhhhcccccceeecCCccHHHHHHHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeehhhhc-
Confidence 3455677788999999998531 00112222 36898643
Q ss_pred HHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 281 ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.....|++..||| +++.+.++++ ++..||=+.+|.=.+|-
T Consensus 142 --~~~~~~~~LAGGl-~~~Nv~~a~~-~~p~gvDvsSGvE~~pG 181 (198)
T d1piia1 142 --GQSLGNVLLAGGL-GADNCVEAAQ-TGCAGLDFNSAVESQPG 181 (198)
T ss_dssp --TSCCTTEEEESSC-CTTTHHHHHT-TCCSEEEECGGGEEETT
T ss_pred --ccccceeEEecCC-CHHHHHHHHh-cCCCEEEeCCcccCCCC
Confidence 3445799999999 6899999885 69999999988766554
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.03 E-value=0.16 Score=47.09 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccccc----CCCCCccCH----HHHHH
Q 013813 210 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRADW----NAIKA 280 (436)
Q Consensus 210 p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~----~~~~g~ad~----~~i~~ 280 (436)
++...+-++.++... ..++.+.+..+.+.++..++++.+++.|+|+|.++--..... .+.....+. +.++.
T Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~ 165 (312)
T d1gtea2 86 AAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRW 165 (312)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHH
Confidence 344555555555444 557777777788888889999999999999998863221110 011111233 34556
Q ss_pred HHhhCCCcEE--EccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 281 VKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 281 ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+++.+++||+ ...++.+..++.+.+++.|+|+|.+.-
T Consensus 166 v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n 204 (312)
T d1gtea2 166 VRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATN 204 (312)
T ss_dssp HHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECC
T ss_pred HhhccCCceeecccccchhHHHHHHHHHHhcccceEEEe
Confidence 6777799988 466788888888888778999997753
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=95.03 E-value=0.086 Score=50.19 Aligned_cols=135 Identities=17% Similarity=0.263 Sum_probs=91.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+.|++.-+. ++++...+++. +|.+.| |+.++++.+++.++- .+++||.+|--...
T Consensus 158 glpvvTdV~--~~~~~~~~~e~----~DilQI--------------~A~~~~n~~LL~~~g-----~t~kpV~lKkG~~~ 212 (338)
T d1vr6a1 158 GMYVVTEAL--GEDDLPKVAEY----ADIIQI--------------GARNAQNFRLLSKAG-----SYNKPVLLKRGFMN 212 (338)
T ss_dssp TCEEEEECS--SGGGHHHHHHH----CSEEEE--------------CGGGTTCHHHHHHHH-----TTCSCEEEECCTTC
T ss_pred CceeEEecc--chhhhhhhhce----eeeEEe--------------chhhccCHHHHHHhh-----ccCCcEEecCcccc
Confidence 567776653 44444444432 466554 688999988776543 35899999965567
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHHHHhhCCCcEEEc----cCCCCH--HHHHHHHHhcC
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLAN----GNVRHM--EDVQKCLEETG 309 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ik~~~~iPVian----GGI~s~--eda~~~l~~tG 309 (436)
+.++....++.+.+.|-..|.+.-|-.....++. ...|+..+..+++...+|||.. ||-+.. .-++..+. .|
T Consensus 213 s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~~lPVi~DpsHs~G~r~~v~~larAAvA-~G 291 (338)
T d1vr6a1 213 TIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIA-VG 291 (338)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHH-HT
T ss_pred chhhhhhhHHHHHhcCCccceeeeccccccccccccchhhcccceeeccccCceeeCCCCCCCchhHHHHHHHHHHH-hC
Confidence 8888888899999999988887655422111221 2468888999998889999973 554443 22344555 49
Q ss_pred cceeeeeh
Q 013813 310 CEGVLSAE 317 (436)
Q Consensus 310 aDgVmIGR 317 (436)
|||+||=.
T Consensus 292 adGl~iE~ 299 (338)
T d1vr6a1 292 AHGIIVEV 299 (338)
T ss_dssp CSEEEEEB
T ss_pred CCEEEEEe
Confidence 99999873
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.02 E-value=0.16 Score=47.13 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=97.7
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHH-HcCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARR-VEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~-v~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP 227 (436)
-.++||+--+. |-+|+++++++.. +..|.|.|-= |++.|. -+-+.++.+.+.+.++...+.++..
T Consensus 16 v~~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~--------~~p~~eRv~~~~~a~~~a~~~TG~~ 87 (283)
T d1ykwa1 16 AHGRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVT--------WSSIEERAAHLGKARRKAEAETGEP 87 (283)
T ss_dssp CCSSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBT--------TBCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCC--------CccHHHHHHHHHHHHHHHHHHhCCe
Confidence 35899999986 6679999999965 4567898753 333211 1112234455555555555566644
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc------------CC
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG------------NV 295 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG------------GI 295 (436)
+..=..+..+.++..+-++.+.+.|++.+.|-.-+ +-|..+..+++..++||.+-. ||
T Consensus 88 ~lya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~a~~~l~~~~~lpi~~H~a~~g~~~r~~~~Gi 157 (283)
T d1ykwa1 88 KIYLANITDEVDSLMEKHDVAVRNGANALLINALP----------VGLSAVRMLSNYTQVPLIGHFPFIASFSRMEKYGI 157 (283)
T ss_dssp CEEEEECCCCGGGHHHHHHHHHHHTCCEEEEEHHH----------HCHHHHHHHHHHCSSCEEEECTTTHHHHCSTTSEE
T ss_pred eEEeeecCCCHHHHHHHHHHHHHhCCCEEEEeccc----------chHHHHHHHHhhcCCCeEeeeccceeeccCcCCCc
Confidence 44445565677888888999999999988765322 236778888888899999842 45
Q ss_pred CCHHHHHHHHHhcCcceeeee
Q 013813 296 RHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIG 316 (436)
+..-.-++.+..|+|.|.++
T Consensus 158 -s~~vl~KL~RLaGaD~ih~~ 177 (283)
T d1ykwa1 158 -HSKVMTKLQRLAGLDAVIMP 177 (283)
T ss_dssp -CHHHHHHHHHHHTCSEEEEE
T ss_pred -cHHHHHHHHHHcCCCceeec
Confidence 44556677777899999987
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.13 Score=45.73 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=80.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
..|++.=|.+.++++....++.+ +.|+..|||-+--|. ..+.++.+++.. ++-|.+. .
T Consensus 14 ~~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~------------------a~~~I~~l~~~~p~~~vGaG--T 73 (213)
T d1wbha1 14 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTEC------------------AVDAIRAIAKEVPEAIVGAG--T 73 (213)
T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTT------------------HHHHHHHHHHHCTTSEEEEE--S
T ss_pred hCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh------------------HHHHHHHHHHHCCCCeeecc--c
Confidence 36898889999999999999765 568999999975553 233333333332 2222222 1
Q ss_pred CCChhhHHHHHHHHHHcCccEE-----------------------------------------EeccCcccccCCCCCcc
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLL-----------------------------------------AVHGRTRDEKDGKKFRA 273 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I-----------------------------------------~VHgRt~~~~~~~~g~a 273 (436)
=.+.+ -++.+.++|++++ -+..-.. .|+
T Consensus 74 V~~~~----~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~------~Gg- 142 (213)
T d1wbha1 74 VLNPQ----QLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEA------NGG- 142 (213)
T ss_dssp CCSHH----HHHHHHHHTCSCEEESSCCHHHHHHHHHSSSCEEEEESSHHHHHHHHHTTCCEEEETTTTT------TTH-
T ss_pred cccHH----HHHHHHHCCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccchh------cCh-
Confidence 11111 1233334444443 3322111 011
Q ss_pred CHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 274 DWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 274 d~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
..+++.++.- .+++++..|||. .+++.++++. |+.++.+|+.+.
T Consensus 143 -~~~lkal~~p~p~~~~~ptGGV~-~~n~~~yl~~-g~v~~~~Gs~l~ 187 (213)
T d1wbha1 143 -VKALQAIAGPFSQVRFCPTGGIS-PANYRDYLAL-KSVLCIGGSWLV 187 (213)
T ss_dssp -HHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHTS-TTBSCEEEGGGS
T ss_pred -HHHHHHhcCcccCCceeeeCCCC-HHHHHHHHhC-CCEEEEEChhhC
Confidence 3567777765 489999999998 5899999986 899998886544
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=94.93 E-value=0.11 Score=48.28 Aligned_cols=128 Identities=18% Similarity=0.169 Sum_probs=73.6
Q ss_pred HcCCCcEEEEecCC--CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----CC--C-hhhHHHHHHHH
Q 013813 179 VEPYCDYVDINLGC--PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-----FP--N-LQDTIKYAKML 248 (436)
Q Consensus 179 v~~g~D~IdLN~GC--P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-----g~--~-~~d~~~~ak~l 248 (436)
+..|+|+|-+.+-. .... ....+.+.++.++++ ..++|+.+=+=. .. + .+.....++.+
T Consensus 116 ~~~GadaVk~lv~~~~d~~~----------e~~~~~~~~l~~~c~-~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~ 184 (291)
T d1to3a_ 116 KRDGAKALKLLVLWRSDEDA----------QQRLNMVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKEL 184 (291)
T ss_dssp HHTTCCEEEEEEEECTTSCH----------HHHHHHHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHH
T ss_pred HhccCceEEEEEeeCCcccH----------HHHHHHHHHHHHHHH-HcCCcceEEEEecCCCcccccchHHHHHHHHHHH
Confidence 45588888876531 1110 011233455555543 558898875422 11 1 12345678888
Q ss_pred HHcCccEEEeccCcccccCCCCCccCHH---HHHHHHhhCCCc-EEEccCCCCHHHHHHHHH---hcCcceeeeehHHhh
Q 013813 249 EDAGCSLLAVHGRTRDEKDGKKFRADWN---AIKAVKNALRIP-VLANGNVRHMEDVQKCLE---ETGCEGVLSAESLLE 321 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~~~g~ad~~---~i~~ik~~~~iP-VianGGI~s~eda~~~l~---~tGaDgVmIGRgal~ 321 (436)
.+.|+|.+-+---... ....|+ ...++.....+| |+..||. +.++..+.++ ..||.|+.+||.+..
T Consensus 185 ~e~GaDi~K~~~p~~~------~~~~~~~~~~~~~~~~~~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~ 257 (291)
T d1to3a_ 185 GDSGADLYKVEMPLYG------KGARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWS 257 (291)
T ss_dssp TTSSCSEEEECCGGGG------CSCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHG
T ss_pred HhcCCcEEEEecCCCc------hhhhHHHHHHHHHHhhcCCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhh
Confidence 8999998865311100 012333 344555566899 6677776 4455555443 259999999999998
Q ss_pred CCc
Q 013813 322 NPA 324 (436)
Q Consensus 322 nP~ 324 (436)
+|-
T Consensus 258 ~~~ 260 (291)
T d1to3a_ 258 SVI 260 (291)
T ss_dssp GGT
T ss_pred Ccc
Confidence 863
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.086 Score=49.10 Aligned_cols=208 Identities=14% Similarity=0.121 Sum_probs=118.5
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeC-c-ccch--hhccChhh-hhhhh-----hccCCCCCEEEEe
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTP-M-LHSR--IFTESEKY-RNEEF-----ATCKEDRPLFVQF 164 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Te-m-isa~--~l~~~~~~-~~~~~-----~~~~~e~plivQL 164 (436)
.|++.+-.+.++++| |+-|.-=-+++.+.|.+.+||- . +++. ++-..... ....+ -....+.|+++=+
T Consensus 7 ~lr~ll~~~~~~~~~--~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~ 84 (289)
T d1muma_ 7 AFRAALTKENPLQIV--GTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDA 84 (289)
T ss_dssp HHHHHHHHCSSEEEE--ECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHhCCCCEEee--cCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeecc
Confidence 356555544455555 4445444468888999888764 2 2221 22111100 00000 0112468999886
Q ss_pred c---CCCHHHHHHHHHHH-cCCCcEEEEecC-CCchhhhcCccccc-ccCChHHHHHHHHHHhcccCccEEEEeccC---
Q 013813 165 C---ANDPEILLNAARRV-EPYCDYVDINLG-CPQRIARRGNYGAF-LMDNLPLVKSLVEKLALNLNVPVSCKIRVF--- 235 (436)
Q Consensus 165 ~---g~d~e~~~~AA~~v-~~g~D~IdLN~G-CP~~~~~~~~~Gs~-Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg--- 235 (436)
= |+.+....+.++.+ +.|+.+|.|--. -|. +.+.+++. +....+.+.+|-.++....+..+.+=-|..
T Consensus 85 d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk---~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~ 161 (289)
T d1muma_ 85 DIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAK---RCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALA 161 (289)
T ss_dssp TTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCS---STTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHH
T ss_pred cccccccchHHHHHHHHHHHCCCCEEEecCccccc---ccccccccceecHHHHHHHHHHHHHhcCCcchhheecccccc
Confidence 4 56688888888765 559999999743 111 11223333 333334444444433332233344444553
Q ss_pred -CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE---ccCCCCHHHHHHHHHhcCcc
Q 013813 236 -PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA---NGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 236 -~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia---nGGI~s~eda~~~l~~tGaD 311 (436)
...+++++=++...++|+|.|-+++.. +.+.++++++.+++|+.+ .||-...-++.++-+ -|+.
T Consensus 162 ~~g~~eAi~R~~aY~eAGAD~vf~~~~~-----------~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~eL~~-~Gv~ 229 (289)
T d1muma_ 162 VEGLDAAIERAQAYVEAGAEMLFPEAIT-----------ELAMYRQFADAVQVPILANITEFGATPLFTTDELRS-AHVA 229 (289)
T ss_dssp HHCHHHHHHHHHHHHHTTCSEEEETTCC-----------CHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHH-TTCS
T ss_pred ccCHHHHHHHHHHhhhcCCcEEEecCCC-----------CHHHHHHHHHhcCCCEEEeecCcCCCccchHHHHHH-hccc
Confidence 246788888889999999999887653 346788888888888754 344332223344444 4999
Q ss_pred eeeeehHH
Q 013813 312 GVLSAESL 319 (436)
Q Consensus 312 gVmIGRga 319 (436)
.|..|-.+
T Consensus 230 ~v~~~~~~ 237 (289)
T d1muma_ 230 MALYPLSA 237 (289)
T ss_dssp EEEESSHH
T ss_pred eEEechHH
Confidence 99888554
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.065 Score=47.83 Aligned_cols=90 Identities=24% Similarity=0.317 Sum_probs=69.0
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
||.-=+|. .+.+++..+++.+.+.|+..|-|.-|+.. .++.|+.+++...=-+++.|-|.|.++++++++
T Consensus 16 ~iipvlr~-~~~~~a~~~~~al~~~Gi~~iEitl~tp~---------a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~ 85 (213)
T d1wbha1 16 PVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRTEC---------AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTE 85 (213)
T ss_dssp SEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCSTT---------HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHH
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHHHCCCCeeeccccccHHHHHHHHH
Confidence 55555555 46789999999999999999999887632 368899998875335899999999999999999
Q ss_pred hcCcceeeeehHHhhCCccchhhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
. ||+.++.= + -||.+.+...
T Consensus 86 a-Ga~FivSP-~--~~~~v~~~a~ 105 (213)
T d1wbha1 86 A-GAQFAISP-G--LTEPLLKAAT 105 (213)
T ss_dssp H-TCSCEEES-S--CCHHHHHHHH
T ss_pred C-CCcEEECC-C--CCHHHHHHHH
Confidence 7 99988742 1 4455554433
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=94.49 E-value=0.08 Score=48.69 Aligned_cols=109 Identities=11% Similarity=0.078 Sum_probs=69.9
Q ss_pred CHHHHHHHHHH-HcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAARR-VEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
|.+.+.+-++. ++. |+++|=+|. ..|-...-..+.-.++++.+.+.+ ++||.+-+- +.+..++++
T Consensus 22 D~~~l~~~i~~li~~~Gv~gi~v~G----------ttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~~ie 90 (293)
T d1f74a_ 22 NEKGLRQIIRHNIDKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKEAVE 90 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECc----------cCcchhhCCHHHHhhhhheeeccccCccccccccc-cccHHHHHH
Confidence 56777777764 555 899998872 244444445555566666655544 578888742 356789999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 290 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi 290 (436)
+++.++++|+|+|.+....... .+..--.++...+.+.+++||+
T Consensus 91 la~~a~~~Gad~i~~~pP~~~~---~s~~~~~~~~~~v~~~~~~pi~ 134 (293)
T d1f74a_ 91 LGKYATELGYDCLSAVTPFYYK---FSFPEIKHYYDTIIAETGSNMI 134 (293)
T ss_dssp HHHHHHHHTCSEEECCCCCSSC---CCHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHcCCCEeeccCccccc---cchHHHHHHHhcccccCCceEE
Confidence 9999999999999775443211 0001113455566666677765
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=94.36 E-value=0.49 Score=42.60 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=75.5
Q ss_pred HHcCCCcEEEEe--cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-C------CChhhHHHHHHHH
Q 013813 178 RVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-F------PNLQDTIKYAKML 248 (436)
Q Consensus 178 ~v~~g~D~IdLN--~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-g------~~~~d~~~~ak~l 248 (436)
.+.-|+|+|-++ .|++... +..+.+.++++++. ..++|+.+=.-. + .+.+.....++.+
T Consensus 99 a~rlGadaV~~~v~~g~~~e~-----------~~l~~~~~v~~e~~-~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria 166 (251)
T d1ojxa_ 99 AVSLGASAVGYTIYPGSGFEW-----------KMFEELARIKRDAV-KFDLPLVVWSYPRGGKVVNETAPEIVAYAARIA 166 (251)
T ss_dssp HHHTTCSEEEEEECTTSTTHH-----------HHHHHHHHHHHHHH-HHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHH
T ss_pred HHhchhceEEEEEeCCCCchH-----------HHHHHHHHHHHHHH-HcCCeEEEEEeecCCccccCCCHHHHHHHHHHH
Confidence 345688876554 5655421 12345566666644 448998766532 1 1223344557888
Q ss_pred HHcCccEEEeccCcccccCCCCCccCHHHHHHHH-hhCCCcEEEccCCC--CHHHHHHHHHh---cCcceeeeehHHhhC
Q 013813 249 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK-NALRIPVLANGNVR--HMEDVQKCLEE---TGCEGVLSAESLLEN 322 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik-~~~~iPVianGGI~--s~eda~~~l~~---tGaDgVmIGRgal~n 322 (436)
.+.|+|.|-+- + +-+.+...++. ....+||+..||-. +.+++.+.++. .||.||.+||.+...
T Consensus 167 ~ElGaDivK~~---------~--p~~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~ 235 (251)
T d1ojxa_ 167 LELGADAMKIK---------Y--TGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR 235 (251)
T ss_dssp HHHTCSEEEEC---------C--CSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred HHhCCCEEEec---------C--CCcHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCc
Confidence 99999998552 2 12234445544 45578888777754 56766554332 499999999999765
Q ss_pred Cc
Q 013813 323 PA 324 (436)
Q Consensus 323 P~ 324 (436)
+.
T Consensus 236 ~~ 237 (251)
T d1ojxa_ 236 RD 237 (251)
T ss_dssp TT
T ss_pred Cc
Confidence 54
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=94.05 E-value=0.062 Score=49.14 Aligned_cols=144 Identities=14% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHc----CCCcEEEEecCCCchhhhcCcccccccCChHHHH---HHHHHHhcccCccE
Q 013813 157 DRPLFVQFCANDPEILLNAAR-RVE----PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK---SLVEKLALNLNVPV 228 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~-~v~----~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~---eIv~av~~~~~iPV 228 (436)
..|+..|.++.......+++. .++ .++..|.+- .|.....+.+.+. +-|++++...+.-+
T Consensus 6 ~VPiy~~~G~~~~~~~d~~i~k~~~~~~~~~~~~vK~K------------~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~ 73 (253)
T d1kcza1 6 AVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEK------------LGLKGEKLLEYVKWLRDRIIKLRVREDYAP 73 (253)
T ss_dssp CCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCC------------CCTTSHHHHHHHHHHHHHHHHHCSSTTCCC
T ss_pred CCCeeeccCCcccccHHHHHHHHhhhhhhhhhhhhchh------------cCCCccccHHHHHHHHHHHHHHhcccccCc
Confidence 468888888887665555442 221 234444333 3333333344444 44445555554333
Q ss_pred EEEec--------cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCC-CCccCHHHHHHHHhh-----CCCcEEEccC
Q 013813 229 SCKIR--------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNA-----LRIPVLANGN 294 (436)
Q Consensus 229 sVKiR--------lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~-~g~ad~~~i~~ik~~-----~~iPVianGG 294 (436)
.+.+- .+|+.++++++++.|++.+..+... .++.... ..+.+++..+++++. .++||++.=.
T Consensus 74 ~l~iD~~~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~----iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~ 149 (253)
T d1kcza1 74 IFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLR----IEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEW 149 (253)
T ss_dssp EEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEE----EECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred eeeehhhhccCccCCCCHHHHHHHHHHHHHhcCCCCce----EecCCCCccHhhHHHHHHHHHHHHhccCCccceecccc
Confidence 33332 2688899999999999887765211 1211110 001123556666654 4689999889
Q ss_pred CCCHHHHHHHHHhcCcceeeee
Q 013813 295 VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIG 316 (436)
+.+++|+.++++...||.|.+=
T Consensus 150 ~~~~~d~~~~i~~~a~d~v~iK 171 (253)
T d1kcza1 150 CNTVEDVKFFTDNKAGHMVQIK 171 (253)
T ss_dssp CCSHHHHHHHHHTTCSSEEEEC
T ss_pred ccCHHHHHHHHHhCCcCeeecc
Confidence 9999999999998778988764
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.94 E-value=0.073 Score=51.47 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHhcccCccEEEEe---------ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHH
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKI---------RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKi---------Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~ 279 (436)
.++...+-++.+++....|+..+. .++.. ++..+.++.+.++|++.|+++.-.... ..-.+.++
T Consensus 80 ~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~-~~~~~~~~~l~~agv~vi~id~a~g~~------~~~~~~i~ 152 (378)
T d1jr1a1 80 TPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTH-EDDKYRLDLLALAGVDVVVLDSSQGNS------IFQINMIK 152 (378)
T ss_dssp CHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSS-THHHHHHHHHHHHTCCEEEECCSSCCS------HHHHHHHH
T ss_pred CHHHHHHHHheehhhhhCcccccccccCEEEEEEeccC-HHHHHHHHHHHhhccceEeeeccCccc------hhhHHHHH
Confidence 456666667777766555543321 12333 345566788899999999997553321 11246677
Q ss_pred HHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 280 AVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 280 ~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+++.. ++|| ..|+|.|++.++.+++. |||+|-+|-|
T Consensus 153 ~ik~~~~~~~i-IaGnVaT~e~a~~L~~a-GAD~VkVGiG 190 (378)
T d1jr1a1 153 YMKEKYPNLQV-IGGNVVTAAQAKNLIDA-GVDALRVGMG 190 (378)
T ss_dssp HHHHHSTTCEE-EEEEECSHHHHHHHHHH-TCSEEEECSS
T ss_pred HHHHHCCCCce-eecccccHHHHHHHHHh-CCCEEeeccc
Confidence 777765 5555 58999999999998875 9999988754
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.86 E-value=0.54 Score=42.88 Aligned_cols=178 Identities=16% Similarity=0.176 Sum_probs=101.1
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeC----cccc---hhhccChh---hhhhhhhccCCCCCEEEEe-
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTP----MLHS---RIFTESEK---YRNEEFATCKEDRPLFVQF- 164 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Te----misa---~~l~~~~~---~~~~~~~~~~~e~plivQL- 164 (436)
-++.-|+ ||. |...-|.+|-+++.+.|+|++... |+.- ..+.-... +-...+.......-+++-+
T Consensus 11 ~~K~~g~-ki~---~lTaYD~~~A~~~~~agiDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmP 86 (262)
T d1oy0a_ 11 RWKADGH-KWA---MLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLP 86 (262)
T ss_dssp HHHHHTC-CEE---EEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECC
T ss_pred HHHhCCC-cEE---EEeCCCHHHHHHHHHcCCCEEEEcCchhhhhcCCCCcceeeHHHHHHHHHHHHhccccceeEecch
Confidence 3444555 343 566679999999999999987643 2210 00000000 0001122223334445554
Q ss_pred cC---CCHHHHHHHH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC----
Q 013813 165 CA---NDPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---- 235 (436)
Q Consensus 165 ~g---~d~e~~~~AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg---- 235 (436)
++ .++++..+.| +.+. .|+|+|-|-.| . ...++|+.+.+. ++||.-=+.+.
T Consensus 87 f~s~~~s~~~a~~nA~r~~~~~ga~avkleg~------------~-------~~~~~I~~L~~~-gIPV~gHiGLtPQ~~ 146 (262)
T d1oy0a_ 87 FGSYEAGPTAALAAATRFLKDGGAHAVKLEGG------------E-------RVAEQIACLTAA-GIPVMAHIGFTPQSV 146 (262)
T ss_dssp TTSSTTCHHHHHHHHHHHHHTTCCSEEEEEBS------------G-------GGHHHHHHHHHH-TCCEEEEEECCC---
T ss_pred hhhcccchHHHHHHHHHHHhccccceeeechh------------h-------hhHHHHHHHHhc-CCceEEeeeecceee
Confidence 22 3456555544 6674 58999999832 1 123444444332 67877665442
Q ss_pred ----------CCh--hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHH
Q 013813 236 ----------PNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 236 ----------~~~--~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~ 303 (436)
.+. ...++-|+.++++|+..|.+-... .+..++|.+.++||+|+-|.=
T Consensus 147 ~~~Gg~r~~Gk~~~~~~l~~da~~le~AGa~~ivlE~Vp------------~~la~~It~~~~IPtIGIGAG-------- 206 (262)
T d1oy0a_ 147 NTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMVP------------AELATQITGKLTIPTVGIGAG-------- 206 (262)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTCSEEEEESCC------------HHHHHHHHHHCSSCEEEESSC--------
T ss_pred eecCccceeccchhhhHhHHHHHHHHhCCcEEEeccccc------------HhHHHHHHhhCCceEEEeccC--------
Confidence 121 123444788999999999886432 366789999999999988832
Q ss_pred HHHhcCcceee-eehHHhh
Q 013813 304 CLEETGCEGVL-SAESLLE 321 (436)
Q Consensus 304 ~l~~tGaDgVm-IGRgal~ 321 (436)
.+|||-+ +---+|+
T Consensus 207 ----~~cDGQvLV~~DiLG 221 (262)
T d1oy0a_ 207 ----PNCDGQVLVWQDMAG 221 (262)
T ss_dssp ----SCSSEEEECHHHHTT
T ss_pred ----CCCCeeEEeHHhhhC
Confidence 3688844 3333444
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.14 Score=46.96 Aligned_cols=125 Identities=13% Similarity=-0.010 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++.+ +.|+++|=++. ..|-...-..+.=.++++.+.+.+ .+||.+-+- ..+..+++++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gl~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~-~~s~~~~i~~ 88 (292)
T d2a6na1 20 CRASLKKLIDYHVASGTSAIVSVG----------TTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEAISL 88 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------eccchhhCCHHHHHHHhhhhhhhccccceeEeecc-cchHHHHHHH
Confidence 567777777654 66999998883 234333333444455555554444 478888742 3456889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 306 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~ 306 (436)
++.++++|+|++.+..-... ..+...-+++.+.+.+.+++||+ +| |--.+++.+.++.+
T Consensus 89 ~~~a~~~Gad~~~~~pP~~~---~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~ 153 (292)
T d2a6na1 89 TQRFNDSGIVGCLTVTPYYN---RPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAK 153 (292)
T ss_dssp HHTTTTSSCCEEEEECCCSS---CCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred hccHHhcCCcceeccCCCCC---CCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHhc
Confidence 99999999999988653221 11111225677888888899975 43 33467777777544
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.79 E-value=0.063 Score=50.98 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CC
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 287 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~i 287 (436)
+++...+.++.+++. ..++.+=+... .+..+.++.+.++|+|.|+|..-.. +. ..-.+.++.+++.. ++
T Consensus 71 ~~e~~~~~i~~vk~~-~~~v~~~vgv~---~~~~e~~~~li~agvd~ivId~A~G-----~~-~~~~~~ik~ik~~~~~~ 140 (330)
T d1vrda1 71 TPDEQARQVSIVKKT-RLLVGAAVGTS---PETMERVEKLVKAGVDVIVIDTAHG-----HS-RRVIETLEMIKADYPDL 140 (330)
T ss_dssp CHHHHHHHHHHHHTC-CBCCEEEECSS---TTHHHHHHHHHHTTCSEEEECCSCC-----SS-HHHHHHHHHHHHHCTTS
T ss_pred chhhhHHHHHHHhhh-ccEEEEEEecC---HHHHHHHHHHHHCCCCEEEEecCCC-----Cc-hhHHHHHHHHHHhCCCC
Confidence 466666666776543 33333333232 2345677888899999998842211 10 11246677777764 56
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
| +..|+|.|.+.++.+++. |||+|-+|-
T Consensus 141 ~-viaGnV~t~~~a~~l~~~-GaD~v~VGi 168 (330)
T d1vrda1 141 P-VVAGNVATPEGTEALIKA-GADAVKVGV 168 (330)
T ss_dssp C-EEEEEECSHHHHHHHHHT-TCSEEEECS
T ss_pred C-EEeechhHHHHHHHHHHc-CCCEEeecc
Confidence 5 556889999999998875 999998874
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.25 Score=45.19 Aligned_cols=135 Identities=11% Similarity=0.131 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++.+ +.|+++|=++. ..|-+..-..+.-.++++.+.+.+ .+|+.+-+- +.+..+++++
T Consensus 21 D~~~l~~~i~~l~~~Gv~gi~~~G----------~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~~s~~~~i~~ 89 (295)
T d1hl2a_ 21 DKASLRRLVQFNIQQGIDGLYVGG----------STGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG-CVSTAESQQL 89 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------EccchhhCCHHHHHHHHhhhHHhhccccceeeccc-cchhhHHHHH
Confidence 566777777654 56999998883 345454455666667777666555 478888742 3467889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh-hCCCcEEE------ccCCCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPVLA------NGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~-~~~iPVia------nGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.++++|+|++.+....... .+..--.++..++.+ ..++|++. .|---+++.+.++.+..++-++=.+
T Consensus 90 a~~a~~~Gad~~~v~~p~~~~---~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~~pnvvgiK~~ 165 (295)
T d1hl2a_ 90 AASAKRYGFDAVSAVTPFYYP---FSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVTLPGVGALKQT 165 (295)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEEC
T ss_pred HHHHHhcCCceeeeeeccccC---CChHHHHHHHHHHhcccCcCcccccccccccccccccccccccccCcchhhhccc
Confidence 999999999999887554321 100111333444444 34667664 3334566777776544344444333
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=93.64 E-value=1.7 Score=38.92 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=89.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
..++|.|.|.+.+++.+.++.+ ..++|.||+=+.+=.. ..+.+.+.++++.+++.+ ++|+.+=+|..
T Consensus 16 pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~-----------~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~ 84 (252)
T d1gqna_ 16 PKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMD-----------IASTQSVLTAARVIRDAMPDIPLLFTFRSA 84 (252)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSC-----------TTCHHHHHHHHHHHHHHCTTSCEEEECCBG
T ss_pred CEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccc-----------cCCHHHHHHHHHHHHHhcCCCCEEEEEech
Confidence 3477999999999998777666 4589999998642100 135678889999998876 58999988872
Q ss_pred -------CChhhHHHHHHHHHHcC-ccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc----CCCCHHHHHH
Q 013813 236 -------PNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQK 303 (436)
Q Consensus 236 -------~~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG----GI~s~eda~~ 303 (436)
.+.++-.++.+.+.+.| +++|.|--.... .....+....+..++.||++= +-.+.+++.+
T Consensus 85 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~--------~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~ 156 (252)
T d1gqna_ 85 KEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGD--------ADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVS 156 (252)
T ss_dssp GGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCH--------HHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHH
T ss_pred hhCCCCCCCHHHHHHHHHHHHHcCCCceEeccccccH--------HHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHH
Confidence 13345567777788888 799988533221 011112222334567777653 3334456655
Q ss_pred HHH---hcCcceeeee
Q 013813 304 CLE---ETGCEGVLSA 316 (436)
Q Consensus 304 ~l~---~tGaDgVmIG 316 (436)
.++ ..|||.|=++
T Consensus 157 ~~~~m~~~gaDivKia 172 (252)
T d1gqna_ 157 RLRKMQALGADIPKIA 172 (252)
T ss_dssp HHHHHHHTTCSEEEEE
T ss_pred HHHHHHHhCCCeEEEE
Confidence 443 3578866444
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=93.62 E-value=0.047 Score=53.04 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.+..+.++.|.++|+|.|+|..-.... ..-.+.++.+++.. ++|| ..|+|.|++.++.+++. |||+|-+|-
T Consensus 150 ~~~~~ra~~L~~aG~D~ivID~AhG~s------~~~~~~i~~ik~~~~~v~v-IaGNV~T~e~a~~L~~~-GaD~VkVGi 221 (388)
T d1eepa_ 150 IDTIERVEELVKAHVDILVIDSAHGHS------TRIIELIKKIKTKYPNLDL-IAGNIVTKEAALDLISV-GADCLKVGI 221 (388)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCCSS------HHHHHHHHHHHHHCTTCEE-EEEEECSHHHHHHHHTT-TCSEEEECS
T ss_pred HHHHHHHHHHHhhccceeeeeccccch------HHHHHHHHHHHHHCCCCce-eeccccCHHHHHHHHhc-CCCeeeecc
Confidence 455677888999999999995322111 12257788888764 6665 67899999999998875 999998884
Q ss_pred H
Q 013813 318 S 318 (436)
Q Consensus 318 g 318 (436)
|
T Consensus 222 G 222 (388)
T d1eepa_ 222 G 222 (388)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=93.53 E-value=0.78 Score=42.23 Aligned_cols=110 Identities=24% Similarity=0.266 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHHhcccCccEEEEecc-CC------------ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRV-FP------------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 275 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRl-g~------------~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~ 275 (436)
+-+..+++++..+. .+++|-.=+-. +. ...++.+..+.+++.|+|.|.|.-.+..+.+......|+
T Consensus 112 Ni~~t~~vv~~ah~-~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~ 190 (284)
T d1gvfa_ 112 NVKLVKSVVDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDF 190 (284)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCH
T ss_pred HHHHHHHHHHHHHh-hccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCceeeccCCCCcccc
Confidence 44555666665543 35665554322 10 012334444556689999998855555444433445789
Q ss_pred HHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHHh
Q 013813 276 NAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 276 ~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRgal 320 (436)
+.+++|++.+++|++.-||=..+ ++++++++ .|+.-|=|++.+-
T Consensus 191 ~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai~-~Gi~KiNi~T~l~ 235 (284)
T d1gvfa_ 191 QRLAEIREVVDVPLVLHGASDVPDEFVRRTIE-LGVTKVNVATELK 235 (284)
T ss_dssp HHHHHHHHHCCSCEEECCCTTCCHHHHHHHHH-TTEEEEEECHHHH
T ss_pred chhhhhhccccCCeEeeCCCCCCHHHHHHHHH-cCeEEEEechHHH
Confidence 99999999999999988875544 55666676 4888888887653
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=93.49 E-value=0.22 Score=43.33 Aligned_cols=138 Identities=17% Similarity=0.080 Sum_probs=82.7
Q ss_pred EEecCC-CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhh
Q 013813 162 VQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD 240 (436)
Q Consensus 162 vQL~g~-d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d 240 (436)
|-|||- ++++...| ++.|+|+|-+++--.++. . =+++.+.+|++.+...+ .+|.|= ...+
T Consensus 3 iKICGit~~ed~~~~---~~~gad~iGfif~~~SpR---~-------vs~~~a~~i~~~~~~~~-~~V~Vf--~~~~--- 63 (200)
T d1v5xa_ 3 VKICGITRLEDALLA---EALGAFALGFVLAPGSRR---R-------IAPEAARAIGEALGPFV-VRVGVF--RDQP--- 63 (200)
T ss_dssp EEECCCCCHHHHHHH---HHHTCSEEEEECCTTCTT---B-------CCHHHHHHHHHHSCSSS-EEEEEE--SSCC---
T ss_pred EEEcCCCcHHHHHHH---HhCCCCEEEEEcCCCCCC---C-------cCHHHHHHHHHhhcCce-eeeeee--eech---
Confidence 567885 44543333 334889999998322221 1 14777888887765432 233333 2223
Q ss_pred HHHHHHHHHHcCccEEEeccCccc-------------------------------------cc-CCCCCccCHHHHHHHH
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRD-------------------------------------EK-DGKKFRADWNAIKAVK 282 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~-------------------------------------~~-~~~~g~ad~~~i~~ik 282 (436)
..++.+.++..|.+.|.+||.... .. .+..+..+|++...+.
T Consensus 64 ~~~i~~~~~~~~~d~vQlHg~e~~~~~~~l~~~~~iik~~~~~~~~~~~~~~~~~~~~L~D~~~~g~g~~~~~~~~~~~~ 143 (200)
T d1v5xa_ 64 PEEVLRLMEEARLQVAQLHGEEPPEWAEAVGRFYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAWAKPLL 143 (200)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCCHHHHHHHTTTSCEEEEEECSSSCCGGGGGSSCSEEEEECSSTTSCCCCCGGGGHHHH
T ss_pred hhhhhhhhcccccccccccccCCHHHHHHHhhccccceeeccCchhhHHHhhcchhheeecccccCcccccchHHHhhhh
Confidence 234556677889999999875420 00 1111234555444433
Q ss_pred hhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 283 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 283 ~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
. ...|++..|||. ++.+.++++ .+..||=+.+|.=.
T Consensus 144 ~-~~~~~~LAGGl~-~~Nv~~~~~-~~p~gvDvsSGvE~ 179 (200)
T d1v5xa_ 144 A-TGRRVILAGGIA-PENLEEVLA-LRPYALDLASGVEE 179 (200)
T ss_dssp H-TTSCEEECSSCC-STTHHHHHH-HCCSEEEESGGGEE
T ss_pred h-ccCceEecCCCC-HHHHHHHHh-cCCCEEEEcCceEC
Confidence 3 357999999998 566888886 58999988877743
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=93.39 E-value=0.1 Score=46.02 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=65.9
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l 305 (436)
|+..=+|. .+.+++..+++.+.+.|+..|-|.-|+.. .++.|+++++. ..--+++.|-|.|.+++++++
T Consensus 10 ~iipvlr~-~~~~~a~~~~~al~~~Gi~~iEitlr~p~---------a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~ 79 (202)
T d1wa3a1 10 KIVAVLRA-NSVEEAKEKALAVFEGGVHLIEITFTVPD---------ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAV 79 (202)
T ss_dssp CEEEEECC-SSHHHHHHHHHHHHHTTCCEEEEETTSTT---------HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHH
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHcCCCEEEEecCCcc---------HHHHHHHHHHhcCCCcEEEecccccHHHHHHHH
Confidence 34433554 45789999999999999999999877632 25778877653 244579999999999999999
Q ss_pred HhcCcceeeeehHHhhCCccchhhh
Q 013813 306 EETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+. ||+.++. . -.||++.....
T Consensus 80 ~a-Ga~fivs--P-~~~~~v~~~~~ 100 (202)
T d1wa3a1 80 ES-GAEFIVS--P-HLDEEISQFCK 100 (202)
T ss_dssp HH-TCSEEEC--S-SCCHHHHHHHH
T ss_pred hh-cccEEeC--C-CCcHHHHHHHH
Confidence 97 9998861 1 23455655443
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=93.21 E-value=0.16 Score=46.36 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=48.0
Q ss_pred CCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHH
Q 013813 167 NDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 245 (436)
Q Consensus 167 ~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~a 245 (436)
.|++...+-| +.+++|+|.||||.| .......+.+..++..+++.+++|++|..+- .+.+
T Consensus 22 ~d~~~~~~~A~~m~~~GAdiIDIg~g------------~~~~~e~e~~~~vi~~l~~~~~vpiSIDT~~-------~~v~ 82 (262)
T d1f6ya_ 22 RDPAPVQEWARRQEEGGARALDLNVG------------PAVQDKVSAMEWLVEVTQEVSNLTLCLDSTN-------IKAI 82 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECSC-------HHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCC------------CCCCCHHHHHHHHHHHHHHhhcCCccccCCc-------cHHH
Confidence 4777777766 466789999999843 3444556778888888888889999998532 2233
Q ss_pred HHHHH--cCccEE
Q 013813 246 KMLED--AGCSLL 256 (436)
Q Consensus 246 k~le~--aG~d~I 256 (436)
+...+ .|++.|
T Consensus 83 ~aal~~~~Ga~iI 95 (262)
T d1f6ya_ 83 EAGLKKCKNRAMI 95 (262)
T ss_dssp HHHHHHCSSCEEE
T ss_pred HHHHHhhccccee
Confidence 33333 577766
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=3 Score=37.48 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=96.7
Q ss_pred HHHHHHHHH---hCCCeEEeCcccchhhccChhhhhh----hhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEE
Q 013813 116 LPFRMLCRR---YGAEAAYTPMLHSRIFTESEKYRNE----EFATCKEDRPLFVQFCANDPEILLNAARRVEP-YCDYVD 187 (436)
Q Consensus 116 ~~fR~l~~~---~Ga~l~~Temisa~~l~~~~~~~~~----~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D~Id 187 (436)
..||.+++. .|++.++.-..+.+...-+...+.. ..+......|+++.+.+.+.++..+-++.++. |+|++-
T Consensus 23 ~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~ 102 (295)
T d1hl2a_ 23 ASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVS 102 (295)
T ss_dssp HHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCceee
Confidence 556665543 4887655444343332222222221 12234566799999999999999999988865 999988
Q ss_pred EecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEEEEe---ccCCChhhHHHHHHHHHHc-CccEEEeccCc
Q 013813 188 INLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKI---RVFPNLQDTIKYAKMLEDA-GCSLLAVHGRT 262 (436)
Q Consensus 188 LN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVsVKi---Rlg~~~~d~~~~ak~le~a-G~d~I~VHgRt 262 (436)
+-. |... ....+.+.+-..++.+ ..+.|+.+-- +.|.+.. .++...+.+. .+-+|-
T Consensus 103 v~~--p~~~----------~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~--~~~l~~L~~~pnvvgiK----- 163 (295)
T d1hl2a_ 103 AVT--PFYY----------PFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLT--LDQINTLVTLPGVGALK----- 163 (295)
T ss_dssp EEC--CCSS----------CCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCC--HHHHHHHHTSTTEEEEE-----
T ss_pred eee--cccc----------CCChHHHHHHHHHHhcccCcCcccccccccccccccc--cccccccccCcchhhhc-----
Confidence 862 3210 1123334444444333 3366877753 2232211 2333344332 222221
Q ss_pred ccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 263 RDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 263 ~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
. . ..|+..+.+++... ++. +..|+-. .+...+.. |++|++.|-+.+. |.++.++-
T Consensus 164 -~---~---~~~~~~~~~~~~~~~~~~-v~~g~~~---~~~~~~~~-G~~G~is~~~n~~-p~~~~~i~ 219 (295)
T d1hl2a_ 164 -Q---T---SGDLYQMEQIRREHPDLV-LYNGYDE---IFASGLLA-GADGGIGSTYNIM-GWRYQGIV 219 (295)
T ss_dssp -E---C---CCCHHHHHHHHHHCTTCE-EEECCGG---GHHHHHHH-TCCEEEETTHHHH-HHHHHHHH
T ss_pred -c---c---cccHHHHHHHhhcCCCce-EecccHH---HHhhhhcc-CCCceeccchhcc-chhhHHHH
Confidence 1 1 12444455555544 444 4444322 23445554 9999999987544 77666554
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.03 E-value=0.42 Score=43.59 Aligned_cols=109 Identities=17% Similarity=-0.016 Sum_probs=70.1
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
|.+.+.+-++. ++.|+++|=++. ..|-+..-+.+.=.++++.+.+.. .++.+-+ .+.+..+++++++
T Consensus 18 D~~~~~~~i~~l~~~Gv~gi~~~G----------ttGE~~~Ls~~Er~~~~~~~~~~~-~~~i~gv-~~~st~~~i~~a~ 85 (293)
T d1w3ia_ 18 DKEKLKIHAENLIRKGIDKLFVNG----------TTGLGPSLSPEEKLENLKAVYDVT-NKIIFQV-GGLNLDDAIRLAK 85 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHTTC-SCEEEEC-CCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------echhhhhCCHHHHHHHHHHHHhhc-ccccccc-ccchhhhhhhhhh
Confidence 56777777765 467999998873 234444445555577888776654 4555543 2346788999999
Q ss_pred HHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 290 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi 290 (436)
.+++.|++++.++.-..-.. .+...-+++.+.|.+.+++||+
T Consensus 86 ~a~~~Ga~~~~~~~P~~~~~--~~~~~i~~~f~~Ia~a~~~pi~ 127 (293)
T d1w3ia_ 86 LSKDFDIVGIASYAPYYYPR--MSEKHLVKYFKTLCEVSPHPVY 127 (293)
T ss_dssp HGGGSCCSEEEEECCCSCSS--CCHHHHHHHHHHHHHHCSSCEE
T ss_pred hhhhhccccccccccchhcc--chHHHHHHHHHHHHHhhcccee
Confidence 99999999998764321100 0001123566777777777765
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=92.93 E-value=0.26 Score=44.87 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+..++|+..++.|+++|.|.-- +.+ + .-+++.+..+++.+++||..--=|-++.++.+.... |||+|.+--+
T Consensus 65 ~dp~~~A~~y~~~GA~aiSVLTe---~~~-F--~Gs~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~~-GADaVLLIaa 137 (254)
T d1vc4a_ 65 VDPVEAALAYARGGARAVSVLTE---PHR-F--GGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAF-GASAALLIVA 137 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECC---CSS-S--CCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHT-TCSEEEEEHH
T ss_pred CCHHHHHHHHHhcCCceEEEEcC---ccc-c--cccHHHHHHHHHHcCCCcccCCccccHHHHHHHHhc-cchHHHHHHH
Confidence 36788999999999999988632 111 2 235788999999999999999999999999998875 9999998866
Q ss_pred Hhh
Q 013813 319 LLE 321 (436)
Q Consensus 319 al~ 321 (436)
++.
T Consensus 138 ll~ 140 (254)
T d1vc4a_ 138 LLG 140 (254)
T ss_dssp HHG
T ss_pred HHH
Confidence 654
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.63 E-value=0.076 Score=51.13 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+..+.++.+.++|+|.|+|..-.. +. ..-.+.++++++.. ++||| .|+|.|++.++.+++. |||+|-+|-
T Consensus 107 ~~~er~~~l~~agvd~ivID~A~G-----~s-~~~~~~i~~ik~~~~~~~iI-aGNV~T~e~a~~L~~a-GaD~VkVGi 177 (365)
T d1zfja1 107 DTFERAEALFEAGADAIVIDTAHG-----HS-AGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDA-GVDVVKVGI 177 (365)
T ss_dssp THHHHHHHHHHHTCSEEEECCSCT-----TC-HHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHT-TCSEEEECS
T ss_pred hHHHHHHHHHHcCCCEEEEECCcc-----cc-cchhHHHHHHHhhCCCccee-ecccccHHHHHHHHhc-CCceEEeee
Confidence 345678888899999998852211 10 11245677887765 67776 7999999999998875 999998884
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=92.59 E-value=1.2 Score=41.34 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHHhcccCccEEEEecc-C-C-C----------hhhHHHHHHHHHHcCccEEEeccCcccccCCCC--Ccc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRV-F-P-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK--FRA 273 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRl-g-~-~----------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~--g~a 273 (436)
+.+..+++++..+. .+++|-.=+-. | . + ..++.+..+.+++.|+|.+.+.-.+..+.|..+ ...
T Consensus 111 Ni~~Tk~vv~~Ah~-~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l 189 (305)
T d1rvga_ 111 NVRETRRVVEAAHA-VGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFI 189 (305)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCC
T ss_pred HHHHHHHHHHHhch-hceeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccc
Confidence 45566677766543 36666555422 1 0 0 113344444456899999987444443333222 237
Q ss_pred CHHHHHHHHhhCCCcEEEccCC----------------------CCHHHHHHHHHhcCcceeeeehHH
Q 013813 274 DWNAIKAVKNALRIPVLANGNV----------------------RHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 274 d~~~i~~ik~~~~iPVianGGI----------------------~s~eda~~~l~~tGaDgVmIGRga 319 (436)
|++.+++|++.+++|++.-||= .+.++++++++. |+.-|=|++.+
T Consensus 190 ~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~-GV~KiNi~T~l 256 (305)
T d1rvga_ 190 DHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISL-GIAKINTDTDL 256 (305)
T ss_dssp CHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHT-TEEEEEECHHH
T ss_pred hHHHHHHHHhccCCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHc-CeEEEEeChHH
Confidence 8999999999999999998863 235777777764 77767666533
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=92.26 E-value=0.57 Score=43.67 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=94.3
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHH-HcCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARR-VEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~-v~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP 227 (436)
-.++||+..+. |-+++++++.+.. +..|+|.|-= |+.-|. -+-+.++.+.+.+.++...+.++..
T Consensus 16 v~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~la~~~--------~~p~~eRv~~~~~a~~~a~~~TG~~ 87 (307)
T d1geha1 16 IKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPW--------YNRFEERAEIMAKIIDKVENETGEK 87 (307)
T ss_dssp CCSSCEEEECCSSCSSCCHHHHHHHHHHHHHTTCCEEECCTTCCCCT--------TSCHHHHHHHHHHHHHHHHHHTCSC
T ss_pred CCCCceEEeeeCCcCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCC--------CCcHHHHHHHHHHHHHHHHHHhCCe
Confidence 36899999885 6679999999965 4567888743 222111 1122334455556666666667766
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHH---hhCCCcEEEc------------
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK---NALRIPVLAN------------ 292 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik---~~~~iPVian------------ 292 (436)
...=..+..+.++..+-++.+.++|+..+-|-.-+ +-|..+..++ +..++||.+-
T Consensus 88 ~lYa~NiT~~~~em~~ra~~a~~~G~~~vmi~~~~----------~G~~al~~lr~~~~~~~lpIh~H~A~~ga~~~~~~ 157 (307)
T d1geha1 88 KTWFANITADLLEMEQRLEVLADLGLKHAMVDVVI----------TGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPY 157 (307)
T ss_dssp CEEECBCCSSHHHHHHHHHHHHHHTCCEEEEEHHH----------HCHHHHHHHHHHHHHTTCEEEEECTTGGGTSSCTT
T ss_pred eEEEEEccCChHHHHHHHHHHHHcCCCEEEEeccc----------cchHHHHHHHHhhccCCeEEEeccccceeeecCcc
Confidence 66556676677888888999999999998664322 1244454444 4567888752
Q ss_pred cCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
-||. ..-..++++..|+|.+.++.
T Consensus 158 ~Gis-~~vl~kl~Rl~GaD~ih~~~ 181 (307)
T d1geha1 158 HGIS-MFVLAKLYRLIGIDQLHVGT 181 (307)
T ss_dssp SEEC-HHHHHHHHHHHTCSEEECCC
T ss_pred CCcc-HHHHHHHHHHhCcCceeccc
Confidence 3553 45566777778999988864
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=91.11 E-value=1.8 Score=38.86 Aligned_cols=131 Identities=20% Similarity=0.185 Sum_probs=80.0
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--CC---
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--FP--- 236 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g~--- 236 (436)
+-+|..++++...| .+.|+|-|||+-.- ..| .|--.+.++..+ ++.+++||.|=||. |.
T Consensus 3 lEvcv~s~~~a~~A---~~~GAdRIELc~~l-----~~G----GlTPS~g~i~~~----~~~~~iPv~vMIRPR~GdF~Y 66 (247)
T d1twda_ 3 LEICCYSMECALTA---QQNGADRVELCAAP-----KEG----GLTPSLGVLKSV----RQRVTIPVHPIIRPRGGDFCY 66 (247)
T ss_dssp EEEEESSHHHHHHH---HHTTCSEEEECBCG-----GGT----CBCCCHHHHHHH----HHHCCSCEEEBCCSSSSCSCC
T ss_pred EEEEeCCHHHHHHH---HHcCCCEEEEcCCc-----ccC----CCCCCHHHHHHH----HHhcCCCeEEEEecCCCCCCC
Confidence 44566666654443 45699999997210 111 233444555444 44568999999986 21
Q ss_pred Chh---hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccC---CCCHHHHHHHHHhcC
Q 013813 237 NLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---VRHMEDVQKCLEETG 309 (436)
Q Consensus 237 ~~~---d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGG---I~s~eda~~~l~~tG 309 (436)
+.. ...+-++.+.++|+++|.+-.=+.+ +..|.+.++++.+.. ++|+...=- +.++.++.+.|...|
T Consensus 67 s~~E~~~M~~di~~~k~~G~dGvV~G~L~~d------g~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG 140 (247)
T d1twda_ 67 SDGEFAAILEDVRTVRELGFPGLVTGVLDVD------GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELG 140 (247)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEECCBCTT------SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEEECCC------CCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcC
Confidence 222 2344567788999999987554433 257888888877654 577765433 345666655555567
Q ss_pred cceee
Q 013813 310 CEGVL 314 (436)
Q Consensus 310 aDgVm 314 (436)
++.|.
T Consensus 141 ~~rIL 145 (247)
T d1twda_ 141 IARVL 145 (247)
T ss_dssp CCEEE
T ss_pred CCeEe
Confidence 77775
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=90.87 E-value=0.43 Score=44.18 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=59.2
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC----CCCCccCHHHHHHHHhhCCCcEEE--ccCCCCH
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD----GKKFRADWNAIKAVKNALRIPVLA--NGNVRHM 298 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~----~~~g~ad~~~i~~ik~~~~iPVia--nGGI~s~ 298 (436)
.....+...... ......+..+..|.+.+.+|.-...... .......|+.++++++..+.|++. .|.+.++
T Consensus 96 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~ 172 (329)
T d1p0ka_ 96 NGLIFANLGSEA---TAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSK 172 (329)
T ss_dssp SSCEEEEEETTC---CHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCH
T ss_pred cceEEEeeccch---hHHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchH
Confidence 344445433322 2334556778899999988754332111 111133478899999998888875 8899999
Q ss_pred HHHHHHHHhcCcceeeee
Q 013813 299 EDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIG 316 (436)
+++.++.+. |+|+|.++
T Consensus 173 ~~a~~~~~~-GaD~i~v~ 189 (329)
T d1p0ka_ 173 ASAGKLYEA-GAAAVDIG 189 (329)
T ss_dssp HHHHHHHHH-TCSEEEEE
T ss_pred HHHHHHHhc-CCCEEEEc
Confidence 999999886 99999984
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=90.87 E-value=0.47 Score=42.04 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=76.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
.|++.=|.+.++++..+.++.+ +.|+..||+-+-.|. ..++++.+++.. ++-|.+. .=
T Consensus 17 ~~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~------------------a~~~i~~l~~~~p~~~vGaG--TV 76 (216)
T d1mxsa_ 17 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQH------------------GLKAIQVLREQRPELCVGAG--TV 76 (216)
T ss_dssp HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTH------------------HHHHHHHHHHHCTTSEEEEE--CC
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh------------------HHHHHHHHHHhCCCcceeee--ee
Confidence 4688889999999999999865 568999999975554 223444444433 2333332 11
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCc--------------------ccc-----cCCCC----CccC----HHHHHHHH
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRT--------------------RDE-----KDGKK----FRAD----WNAIKAVK 282 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt--------------------~~~-----~~~~~----g~ad----~~~i~~ik 282 (436)
.+.+ -++.+.++|++++.--+-. ..+ ..+.. .|++ ..+++.++
T Consensus 77 ~~~~----~~~~a~~aGa~FivsP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~~g~~~ikal~ 152 (216)
T d1mxsa_ 77 LDRS----MFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFG 152 (216)
T ss_dssp CSHH----HHHHHHHHTCSSEECSSCCHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEEEETTHHHHTHHHHHHHHH
T ss_pred ecHH----HHHHHHhCCCCEEECCCCcHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccccccccHHHHHHHh
Confidence 1111 1333444444444221000 000 00000 0221 35677777
Q ss_pred hh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 283 NA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 283 ~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
.- .+++++..|||. .+++.++|+. |+-++..|..+
T Consensus 153 ~p~p~~~fiptGGV~-~~n~~~yl~~-~~v~avggs~l 188 (216)
T d1mxsa_ 153 GPFGDIRFCPTGGVN-PANVRNYMAL-PNVMCVGTTWM 188 (216)
T ss_dssp TTTTTCEEEEBSSCC-TTTHHHHHHS-TTBCCEEECTT
T ss_pred cccccCceeccCCCC-HHHHHHHHhc-CCeEEEEcccc
Confidence 64 379999999997 5899999987 55555556433
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=90.77 E-value=0.63 Score=42.90 Aligned_cols=164 Identities=12% Similarity=0.164 Sum_probs=90.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.|+++ .+..|+-. |++++ .||+.|=+- .++-.. .-|+--.=+-..+.+.+.++.|.+.+++||++-.-.
T Consensus 15 ~~~~~~-~~~~D~~s----A~~~e~~Gf~a~~~sg~~~sa~---~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~ 86 (289)
T d1muma_ 15 ENPLQI-VGTINANH----ALLAQRAGYQAIYLSGGGVAAG---SLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADI 86 (289)
T ss_dssp CSSEEE-EECSSHHH----HHHHHHTTCSCEEECHHHHHHT---TSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTT
T ss_pred CCCEEe-ecCCCHHH----HHHHHHcCCCEEEhhHHHHHHH---ccCCCCCCCCChHHHHHHHHHHhcccCCCeeecccc
Confidence 344444 55566543 34554 488888664 111110 001110001245677788888888899999999888
Q ss_pred CCC--hhhHHHHHHHHHHcCccEEEeccCcccccCC---CCCccC-HHHHHHHHhhC------CCcEEEccCCCC---HH
Q 013813 235 FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG---KKFRAD-WNAIKAVKNAL------RIPVLANGNVRH---ME 299 (436)
Q Consensus 235 g~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~---~~g~ad-~~~i~~ik~~~------~iPVianGGI~s---~e 299 (436)
|.. ..++...++.++++|+.+|+|-..+...+.+ .+.-.. -+.+.+|+... ++-|++==+-.. .+
T Consensus 87 GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~ 166 (289)
T d1muma_ 87 GFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLD 166 (289)
T ss_dssp CSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHH
T ss_pred cccccchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHH
Confidence 653 4688889999999999999996543221111 111111 24556655432 344555444432 33
Q ss_pred HHHHH---HHhcCcceeeeehHHhhCCccchhhh
Q 013813 300 DVQKC---LEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 300 da~~~---l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
++.+- ..+.|||+|++- + +.++..++++.
T Consensus 167 eAi~R~~aY~eAGAD~vf~~-~-~~~~~~~~~~~ 198 (289)
T d1muma_ 167 AAIERAQAYVEAGAEMLFPE-A-ITELAMYRQFA 198 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEET-T-CCCHHHHHHHH
T ss_pred HHHHHHHHhhhcCCcEEEec-C-CCCHHHHHHHH
Confidence 33321 123599999873 2 23444444433
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=90.75 E-value=0.27 Score=44.85 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=58.4
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGa 310 (436)
.|.+...+.++.+.+.|+++|.+.|-+.+... .+..--...++.+.+.+ ++||++.-+-.+.+++.++ .++.|+
T Consensus 21 iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~-Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Ga 99 (292)
T d1xkya1 21 IDFAKTTKLVNYLIDNGTTAIVVGGTTGESPT-LTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGV 99 (292)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECeEccchhh-CCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCC
Confidence 35667788899999999999999888766421 11111134445555543 6898877666666666544 334699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+.-..+..|.
T Consensus 100 d~ilv~pP~~~~~s 113 (292)
T d1xkya1 100 DAVMLVAPYYNKPS 113 (292)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999877655553
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=90.62 E-value=0.55 Score=42.73 Aligned_cols=137 Identities=12% Similarity=0.220 Sum_probs=80.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHh---cccCccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA---LNLNVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~---~~~~iPVsVKiRl 234 (436)
..+++=| |..-+....-.++++.|.|.+-|||.- | +.+...++++.++ +..+.+|.+-..+
T Consensus 21 TKIIaTi-GPas~~~~~l~~li~aGvdv~RiN~SH----------g-----~~e~~~~~i~~iR~~~~~~g~~v~i~~d~ 84 (258)
T d1pkla2 21 ARIICTI-GPSTQSVEALKGLIQSGMSVARMNFSH----------G-----SHEYHQTTINNVRQAAAELGVNIAIALDT 84 (258)
T ss_dssp SEEEEEC-CGGGCSHHHHHHHHHHTEEEEEEETTS----------S-----CHHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEee-CCCcCCHHHHHHHHHcCCCEEEEECCC----------C-----CHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 3466666 433333333445677899999999841 2 2344455554444 4557776665544
Q ss_pred -CC---ChhhHHHHHHHHHHcCccEEEecc-CcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHH---HH
Q 013813 235 -FP---NLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQ---KC 304 (436)
Q Consensus 235 -g~---~~~d~~~~ak~le~aG~d~I~VHg-Rt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~---~~ 304 (436)
|+ +..+..+ .+...+.|+|+|.+.- |+ ..|...++.+.... ++.||+ -|.+.+.+. +.
T Consensus 85 ~gp~~~t~kd~~d-i~~a~~~~vD~ialSFVrs---------~~Dv~~ir~~l~~~~~~~~iia--KIE~~~al~nldeI 152 (258)
T d1pkla2 85 KGPPAVSAKDRVD-LQFGVEQGVDMIFASFIRS---------AEQVGDVRKALGPKGRDIMIIC--KIENHQGVQNIDSI 152 (258)
T ss_dssp CCCCSSCHHHHHH-HHHHHHHTCSEEEETTCCS---------HHHHHHHHHHHCGGGTTSEEEE--EECSHHHHHTHHHH
T ss_pred cccccccccHHHH-HHHHHhcCCCeEEEeCCCC---------HHHHHHHHHHHHHcCCCCceEE--EecCchhhhhhhhH
Confidence 32 2223322 4556688999998852 22 23445555554332 455555 666665554 55
Q ss_pred HHhcCcceeeeehHHhhCCc
Q 013813 305 LEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 305 l~~tGaDgVmIGRgal~nP~ 324 (436)
++. +|||||+||=|+---
T Consensus 153 ~~~--sDgImIaRGDLg~ei 170 (258)
T d1pkla2 153 IEE--SDGIMVARGDLGVEI 170 (258)
T ss_dssp HHH--SSEEEECHHHHTTTS
T ss_pred Hhh--CCeeeEechhhhhhc
Confidence 665 999999999876433
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=89.43 E-value=1.7 Score=39.46 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=84.0
Q ss_pred ecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccc-cccCChHHHHHHHHHHhcccCccEEEEeccCC-Chhh
Q 013813 164 FCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGA-FLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQD 240 (436)
Q Consensus 164 L~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs-~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d 240 (436)
.+..|+-. |++++. ||++|=+-- ......-||.- .+ -..+.+.+.++.|.+.+++||++-+-.|. +..+
T Consensus 21 p~~~Da~S----Ar~~e~aGf~a~~~ss---~~~aas~G~pD~~~-lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~ 92 (275)
T d1s2wa_ 21 MEAHNGLS----ARIVQEAGFKGIWGSG---LSVSAQLGVRDSNE-ASWTQVVEVLEFMSDASDVPILLDADTGYGNFNN 92 (275)
T ss_dssp EEECSHHH----HHHHHHHTCSCEEECC---HHHHHTC----------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHH
T ss_pred ecCcCHHH----HHHHHHcCCCEEEhhH---HHHHHHcCCCCCCc-cchhhHHHHHHhhhcccCCceeEecccccccchH
Confidence 45556433 344443 888877651 11111111211 12 24566778888888899999999998876 4567
Q ss_pred HHHHHHHHHHcCccEEEeccCccccc----CCCC-CccC-HHHHHHHHhh------CCCcEEEccCCC----CHHHHHHH
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEK----DGKK-FRAD-WNAIKAVKNA------LRIPVLANGNVR----HMEDVQKC 304 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~----~~~~-g~ad-~~~i~~ik~~------~~iPVianGGI~----s~eda~~~ 304 (436)
..+.++.++++|+.+|++-..+...+ .+.. ...+ -+.+.+++.. .++-|++--+-. ..+++.+-
T Consensus 93 v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R 172 (275)
T d1s2wa_ 93 ARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKR 172 (275)
T ss_dssp HHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHH
Confidence 77889999999999999965442211 1110 0122 1223333322 245566655532 35555432
Q ss_pred H---HhcCcceeeeehHHhhCCccc
Q 013813 305 L---EETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 305 l---~~tGaDgVmIGRgal~nP~lf 326 (436)
. .+.|||+|++ -+.-.++.+.
T Consensus 173 ~~aY~eAGAD~vf~-~~~~~~~~~~ 196 (275)
T d1s2wa_ 173 AEAYRNAGADAILM-HSKKADPSDI 196 (275)
T ss_dssp HHHHHHTTCSEEEE-CCCSSSSHHH
T ss_pred HHHHHhcCCCeeee-ccccCcHHHH
Confidence 2 2349999997 2333444443
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=89.29 E-value=1.1 Score=42.09 Aligned_cols=145 Identities=13% Similarity=0.087 Sum_probs=91.2
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHH-HcCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARR-VEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~-v~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP 227 (436)
-.+|||+.-+. |-+|+++++.+.. +..|+|.|-= |+..|. -+-+.++.+.+.+.++...+.++..
T Consensus 14 v~~RPLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~--------~~p~~eRv~~~~~av~~a~~eTG~~ 85 (325)
T d1wdda1 14 KYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQP--------FMRWRDRFVFCAEAIYKSQAETGEI 85 (325)
T ss_dssp CCSSCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBT--------TBCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCC--------CcchHHHHHHHHHHHHHHHHhhCCc
Confidence 46899998885 6679999999964 4567888754 332211 0112233444555555555556654
Q ss_pred EEEEecc-CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh---hCCCcEEE------------
Q 013813 228 VSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLA------------ 291 (436)
Q Consensus 228 VsVKiRl-g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~---~~~iPVia------------ 291 (436)
...=..+ +.+.++..+-++.+.++|++.+.+-.-+ .-|..+..+++ ..++||.+
T Consensus 86 k~y~~nit~~~~~em~~ra~~a~e~G~~~~mi~~~~----------~G~~a~~~l~~~~~~~~l~ih~Hra~~ga~tr~~ 155 (325)
T d1wdda1 86 KGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLT----------GGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQK 155 (325)
T ss_dssp CEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEHHH----------HCHHHHHHHHHHHHHHTCEEEEECTTHHHHHSCS
T ss_pred eeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeccc----------ccHHHHHHHHHhhhhcCceeecccccccccccCC
Confidence 4444334 3456777788888999999988663221 12444444443 45788877
Q ss_pred ccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 292 NGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 292 nGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+.||. ..-..++++..|+|.+.+|..
T Consensus 156 ~~Gis-~~vl~kl~RLaGaD~ih~~~~ 181 (325)
T d1wdda1 156 NHGMH-FRVLAKALRMSGGDHIHAGTV 181 (325)
T ss_dssp SSEEC-HHHHHHHHHHHCCSEEECCCS
T ss_pred CCCcc-HHHHHHHHHHcCCCccccCcc
Confidence 66774 556778888889999987753
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.22 E-value=0.49 Score=43.17 Aligned_cols=87 Identities=22% Similarity=0.336 Sum_probs=57.0
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGaD 311 (436)
|.+...+.++.+.+.|+++|.+.|-+.+... .+..--.+.++.+.+.+ ++||++.-+=.+.+++.++. ++.|+|
T Consensus 26 D~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~-Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad 104 (296)
T d1xxxa1 26 DTATAARLANHLVDQGCDGLVVSGTTGESPT-TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 104 (296)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTTTT-SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchhh-CCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCC
Confidence 5567778899999999999999887765321 11111123334444443 58887666666666666544 335999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+.-..+..|.
T Consensus 105 ~v~i~~P~~~~~~ 117 (296)
T d1xxxa1 105 GLLVVTPYYSKPP 117 (296)
T ss_dssp EEEEECCCSSCCC
T ss_pred eEEEEeccCCCCC
Confidence 9999988777664
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=89.19 E-value=1.4 Score=38.95 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=50.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 239 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~ 239 (436)
+||-|=-.+.+++.+.++.+..+.+++.+++ |.- .. +| + ++++++++ .+.+++.-.-+. |..
T Consensus 6 ~IvALD~~~~~~al~i~~~~~~~i~~iKvG~--~l~--~~--~G------~----~~i~~l~~-~~~~IflD~K~~-DIg 67 (237)
T d1dbta_ 6 PIIALDFASAEETLAFLAPFQQEPLFVKVGM--ELF--YQ--EG------P----SIVKQLKE-RNCELFLDLKLH-DIP 67 (237)
T ss_dssp CEEECCCSSHHHHHHHTGGGTTSCCEEEECH--HHH--HH--HT------H----HHHHHHHH-TTCEEEEEEEEC-SCH
T ss_pred eEEEeccCCHHHHHHHHHHcCCcccEEEECH--HHH--hh--cC------H----HHHHHHHh-cchheehhhhhc-cCc
Confidence 3566666667777766666667788998884 221 11 12 2 33445554 356777654454 333
Q ss_pred hH-HHHHHHHHHcCccEEEeccC
Q 013813 240 DT-IKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 240 d~-~~~ak~le~aG~d~I~VHgR 261 (436)
.+ ...++.+.+.|+|.+++|+-
T Consensus 68 nTv~~~~~~~~~~~~d~vtvh~~ 90 (237)
T d1dbta_ 68 TTVNKAMKRLASLGVDLVNVHAA 90 (237)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEGG
T ss_pred hHHHHHHHhhhccccceEEeecc
Confidence 33 34455667789999999963
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=89.17 E-value=0.39 Score=43.70 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=58.0
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHH---hcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLE---ETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~---~tGa 310 (436)
.|.+...+.++.+.+.|+++|.+-|-+.+...- +..--.+.++.+.+.. ++||++..|=.+.+++.++.+ +.|+
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~L-s~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Ga 97 (295)
T d1o5ka_ 19 LDLESYERLVRYQLENGVNALIVLGTTGESPTV-NEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGA 97 (295)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGC-CHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECeeccchhhC-CHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCC
Confidence 355667788898989999999998887654211 1111123333444433 689988777777777665543 3599
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+.-..+..|.
T Consensus 98 d~v~v~pP~y~~~s 111 (295)
T d1o5ka_ 98 NGVLVVTPYYNKPT 111 (295)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEEeCCCCCCCC
Confidence 99999877665554
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.94 E-value=1.5 Score=40.32 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=92.9
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v-~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP 227 (436)
-.++||+.-+. |-+|+++++.+..+ ..|+|.|-= |+..|. -+-+.++.+.+.+.++...+.++..
T Consensus 16 v~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~--------~~p~~eRv~~~~~a~~~a~~~tG~~ 87 (291)
T d2d69a1 16 VKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFP--------FNRFEERVRKLYRVRDRVEAETGET 87 (291)
T ss_dssp CCSSCEEEECCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSCBT--------TBCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCceEEeeeCCcCCCCHHHHHHHHHHHHccCCceecCCccCCCCC--------CCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 46899999885 66799999999654 557888752 221111 1122334455566666666666766
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHH---hhCCCcEEEc------------
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK---NALRIPVLAN------------ 292 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik---~~~~iPVian------------ 292 (436)
+..=..+..+.++..+-++.+.++|+..+-|-.-+. -|..+..++ +...+||.+-
T Consensus 88 ~~Ya~Nit~~~~~m~~ra~~~~~~G~~~vmi~~~~~----------G~~al~~l~~~~~~~~l~ih~Hra~~g~~~r~~~ 157 (291)
T d2d69a1 88 KEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVA----------GWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPR 157 (291)
T ss_dssp CEEECBCCSSHHHHHHHHHHHHHHTCCEEEEEHHHH----------CHHHHHHHHHHHHHHTCEEEEECTTTHHHHSCTT
T ss_pred eEEEEeccCCHHHHHHHHHHHHHcCCCEEEeccccc----------chHHHHHHHHhhccccceeeecccccceeccCCC
Confidence 666666666778888889999999999886643221 244444444 3445776653
Q ss_pred cCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.|| +..-..++.+..|+|.+.++.
T Consensus 158 ~Gi-s~~v~~kL~RLaGaD~ih~~~ 181 (291)
T d2d69a1 158 HGI-TMLALAKAARMIGVDQIHTGT 181 (291)
T ss_dssp SEE-CHHHHHHHHHHHTCSEEECCC
T ss_pred Ccc-cHHHHHHHHHHcCCCeeecCC
Confidence 245 455566777778999998774
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.62 E-value=1.1 Score=40.70 Aligned_cols=53 Identities=30% Similarity=0.481 Sum_probs=40.5
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
|.+...+-| +.+++|+|.||||+|-|. ....+.+..+++.+...+++|+++..
T Consensus 38 d~d~~~~~A~~qv~~GA~iLDIn~~~~~------------~~e~~~m~~li~~l~~~~d~PlsIDT 91 (260)
T d3bofa1 38 NEEIVIKEAKTQVEKGAEVLDVNFGIES------------QIDVRYVEKIVQTLPYVSNVPLSLDI 91 (260)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEECSSGG------------GSCHHHHHHHHHHHHHHTCSCEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCch------------hhhHHHHHHHHHHHHhcCCCCccccC
Confidence 344455544 567889999999987432 34578899999999999999999983
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=1.7 Score=38.97 Aligned_cols=117 Identities=17% Similarity=0.245 Sum_probs=69.1
Q ss_pred HHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHh---cccCccEEEEecc-CCC--hhhHHHHHHHHH
Q 013813 176 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA---LNLNVPVSCKIRV-FPN--LQDTIKYAKMLE 249 (436)
Q Consensus 176 A~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~---~~~~iPVsVKiRl-g~~--~~d~~~~ak~le 249 (436)
.+++..|+|.+-|||.- | +.+...++++.++ +..+.++.+-.-+ |+. ..|. +..+...
T Consensus 21 ~~li~aGvdv~RlN~SH----------g-----~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~-~~i~~a~ 84 (246)
T d1e0ta2 21 AKMLDAGMNVMRLNFSH----------G-----DYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDK-QDLIFGC 84 (246)
T ss_dssp HHHHHHTEEEEEEETTS----------S-----CHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHH-HHHHHHH
T ss_pred HHHHHCCCCEEEEECCC----------C-----CHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcc-hhhhHHH
Confidence 35667799999999841 1 2344444444444 4456777766555 332 2232 3345567
Q ss_pred HcCccEEEecc-CcccccCCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHH---HHHHHhcCcceeeeehHHhh
Q 013813 250 DAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDV---QKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 250 ~aG~d~I~VHg-Rt~~~~~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda---~~~l~~tGaDgVmIGRgal~ 321 (436)
+.|+|+|.+.- |.. -|...++++.+.. +++||+ -|.+.+.+ .+.++. +|||||+||=|+
T Consensus 85 ~~~vD~ialSFVr~~---------~Dv~~~r~~l~~~~~~~~~iia--KIE~~~al~nldeIi~~--sDgImIaRGDLg 150 (246)
T d1e0ta2 85 EQGVDFVAASFIRKR---------SDVIEIREHLKAHGGENIHIIS--KIENQEGLNNFDEILEA--SDGIMVARGDLG 150 (246)
T ss_dssp HHTCSEEEESSCCSH---------HHHHHHHHHHHTTTCTTCEEEE--EECSHHHHHTHHHHHHH--SSEEEEEHHHHH
T ss_pred HcCCCEEEEcCCCCH---------HHHHHHHHHHHHhCCCCceEEE--EecchhhhhchHHHHhh--cceEEEEccchh
Confidence 89999998853 322 2444444443322 344544 45555444 456665 999999999776
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.76 E-value=0.29 Score=46.90 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=47.1
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+.+..+.++|+|.|+|..-.... ..-.+.++++++..++|||+ |+|.|++.+.. ..|||+|-+|
T Consensus 119 ~r~~~l~~aGvd~ivID~A~Gh~------~~~i~~lK~ir~~~~~~vIa-GNVaT~e~~~~---l~gaD~VkVG 182 (368)
T d2cu0a1 119 KRAIELDKAGVDVIVVDTAHAHN------LKAIKSMKEMRQKVDADFIV-GNIANPKAVDD---LTFADAVKVG 182 (368)
T ss_dssp HHHHHHHHTTCSEEEEECSCCCC------HHHHHHHHHHHHTCCSEEEE-EEECCHHHHTT---CTTSSEEEEC
T ss_pred HHHHHHHHcCCCEEEecCcccch------hhhhhhhhhhhhhcccceee-ccccCHHHHHh---hhcCcceeec
Confidence 44667789999999885432211 11246688888888999887 99999998754 3589998877
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=87.57 E-value=0.84 Score=43.35 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--C
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 286 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~ 286 (436)
+++...+.+..+.... ..+..- . ...+..+.++.+.++|++.|++....... ..-.+.++.+++.. +
T Consensus 84 ~ie~~~~~~~~~~~~~-~~~~~~--~--~~~~~~~~~~~L~~ag~d~i~IDvAhG~~------~~v~~~i~~ir~~~~~~ 152 (362)
T d1pvna1 84 SIESQAAMVHAVKNFR-YLVGAG--I--NTRDFRERVPALVEAGADVLCIDSSDGFS------EWQKITIGWIREKYGDK 152 (362)
T ss_dssp CHHHHHHHHHHHHTCC-CCCEEE--E--CSSSHHHHHHHHHHHTCSEEEECCSCCCB------HHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHhhhhhhcc-cccccc--c--chhhhHHHHHHHhhcCceEEeechhccch------hHHHHHHHHHHHhhccc
Confidence 4555555555554432 112221 1 12345567888999999999884332211 11235677775533 4
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+||+ .|+|.|++.++.+++. |+|+|-+|=|
T Consensus 153 ~~Ii-AGNVaT~e~~~~L~~a-GaD~vkVGIG 182 (362)
T d1pvna1 153 VKVG-AGNIVDGEGFRYLADA-GADFIKIGIG 182 (362)
T ss_dssp SCEE-EEEECSHHHHHHHHHH-TCSEEEECSS
T ss_pred eeee-cccccCHHHHHHHHHh-CCcEEEeccc
Confidence 6654 6899999999999876 9999998854
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.91 E-value=0.98 Score=41.14 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=74.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc----cCccEEEEecc
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN----LNVPVSCKIRV 234 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~----~~iPVsVKiRl 234 (436)
.+++=|+ ..-++...-.++++.|.|.+-|||.- | +.+...++++.+|+. .+.||.+-+.+
T Consensus 22 KIIaTiG-Pas~~~e~l~~li~aG~dv~RlN~SH----------g-----~~~~h~~~i~~iR~~~e~~~G~~v~i~~dl 85 (265)
T d1a3xa2 22 SIIGTIG-PKTNNPETLVALRKAGLNIVRMNFSH----------G-----SYEYHKSVIDNARKSEELYPGRPLAIALDT 85 (265)
T ss_dssp EEEEECC-TTTCSHHHHHHHHHHTEEEEEEETTS----------C-----CHHHHHHHHHHHHHHHHHCCCSCCBCEEEC
T ss_pred eEEEeeC-CCCCCHHHHHHHHHcCCCEEEEECCC----------C-----CHHHHHHHHHHHHHHhhhccCCceeeeccc
Confidence 4666664 33333333345667899999999841 2 234455555555432 25555544333
Q ss_pred -CC--ChhhHHHHHHHHHHcCccEEEecc-CcccccCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHH---HHHHH
Q 013813 235 -FP--NLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMED---VQKCL 305 (436)
Q Consensus 235 -g~--~~~d~~~~ak~le~aG~d~I~VHg-Rt~~~~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~ed---a~~~l 305 (436)
++ +..|.. -.+.+.+.|+|+|.+.- |. ..|...++.+... .+++||+ -|.+.+. +.+.+
T Consensus 86 ~~p~ltekD~~-di~~a~~~~vD~ialSFVrs---------~~Di~~~r~~l~~~~~~~~Iia--KIE~~~al~NldeIi 153 (265)
T d1a3xa2 86 KGPALSEKDKE-DLRFGVKNGVHMVFASFIRT---------ANDVLTIREVLGEQGKDVKIIV--KIENQQGVNNFDEIL 153 (265)
T ss_dssp CCCSSCHHHHH-HHHHHHHTTCCEECCTTCCS---------HHHHHHHHHHHCGGGTTSCCEE--EECSHHHHTTHHHHH
T ss_pred cchhcccchHH-HHHHhhhcccceEeeccCCC---------HHHHHHHHHHHHHhcCCCeEEe--eccchHHHhChHHHH
Confidence 22 223332 24556789999997752 22 2345555554432 2455554 3444333 33556
Q ss_pred HhcCcceeeeehHHhh
Q 013813 306 EETGCEGVLSAESLLE 321 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~ 321 (436)
+. +|||||+||=|+
T Consensus 154 ~~--sDgimIaRGDLg 167 (265)
T d1a3xa2 154 KV--TDGVMVARGDLG 167 (265)
T ss_dssp HH--CSEEEEEHHHHH
T ss_pred hh--cceeEEEccchh
Confidence 65 999999999765
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=86.75 E-value=0.69 Score=41.99 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=59.9
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHh---cCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEE---TGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~---tGaD 311 (436)
|.+...+.++.+.+.|+++|.+.|-+.+... .+..--.+.++.+.+.+ ++||++..+=.+.+++.++.+. .|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~-Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad 98 (292)
T d2a6na1 20 CRASLKKLIDYHVASGTSAIVSVGTTGESAT-LNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchhh-CCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCc
Confidence 5566778889999999999999888765421 11010123344444443 5899988888888888877654 5999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
++|+.-..+..+.
T Consensus 99 ~~~~~pP~~~~~~ 111 (292)
T d2a6na1 99 GCLTVTPYYNRPS 111 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred ceeccCCCCCCCC
Confidence 9999977665543
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.15 E-value=0.7 Score=39.27 Aligned_cols=89 Identities=9% Similarity=0.134 Sum_probs=56.6
Q ss_pred HHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEE
Q 013813 213 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVL 290 (436)
Q Consensus 213 v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVi 290 (436)
+.+.++.+++.. ..++.|-.+ ..+-++.+.++|+|.|-+-.-+.++. -+.++.++.. ..+.+.
T Consensus 66 i~~~i~~~k~~~~~~~I~VEv~-------s~~q~~~a~~~~~diImLDN~sp~~~--------k~~v~~~~~~~~~i~lE 130 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEVEVD-------SLEQLDAVLPEKPELILLDNFAVWQT--------QTAVQRRDSRAPTVMLE 130 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEEEES-------SHHHHHHHGGGCCSEEEEETCCHHHH--------HHHHHHHHHHCTTCEEE
T ss_pred hhhhhhhhhhhcCCCceEEEec-------cHHHhhhhhhcCCcEEEecCcChHhH--------HHHHHHhhccCCeeEEE
Confidence 355666666544 455666532 23445667789999997753332210 1334444433 357888
Q ss_pred EccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 291 ANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 291 anGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
++||| +.+.+.++.. +|+|.+.+|.-
T Consensus 131 aSGgI-~~~ni~~ya~-~GvD~IS~gal 156 (169)
T d1qpoa1 131 SSGGL-SLQTAATYAE-TGVDYLAVGAL 156 (169)
T ss_dssp EESSC-CTTTHHHHHH-TTCSEEECGGG
T ss_pred EeCCC-CHHHHHHHHH-cCCCEEECCcc
Confidence 99999 4788888777 69999999943
|
| >d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Homocysteine S-methyltransferase family: Homocysteine S-methyltransferase domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.88 E-value=4.6 Score=36.25 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=74.6
Q ss_pred HhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCC------HHHHHHHHHHHc-CCCcEEEEecCCCchh
Q 013813 124 RYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAND------PEILLNAARRVE-PYCDYVDINLGCPQRI 196 (436)
Q Consensus 124 ~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d------~e~~~~AA~~v~-~g~D~IdLN~GCP~~~ 196 (436)
+.|+|+++-|++.+-.-. +.....++......++++++...+ ...+.+++..+. .+.|.+-+||.++.
T Consensus 137 ~~gvD~i~~ET~~~~~E~---~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~inc~~~~-- 211 (300)
T d3bofa2 137 EEGVDGIIFETFSDILEL---KAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINCSLGP-- 211 (300)
T ss_dssp HTTCSEEEEEEECCHHHH---HHHHHHHHHHCSSSCEEEEECCCTTSCCTTCCCHHHHHHHHHTSSCSEEEEESSSCH--
T ss_pred hcCcceeeeeeeecHHHH---HHHHHhHHhhccccceEEEEEecCCCCcccccchhHHHhhhcccccchHhhcccccc--
Confidence 448999999998652100 000011111123456666665331 133455554444 47899999986533
Q ss_pred hhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC------------ChhhHHHHHHHHHHcCccEEEeccCccc
Q 013813 197 ARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP------------NLQDTIKYAKMLEDAGCSLLAVHGRTRD 264 (436)
Q Consensus 197 ~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~------------~~~d~~~~ak~le~aG~d~I~VHgRt~~ 264 (436)
..+..+++.++...+.|+.++=..|. +.++..++++.+.+.|+..| |.-+.
T Consensus 212 --------------~~~~~~~~~~~~~~~~~~~vypN~g~~~~~~~~~~~~~~p~~f~~~~~~w~~~Ga~iI---GGCCg 274 (300)
T d3bofa2 212 --------------EEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYELGVNIF---GGCCG 274 (300)
T ss_dssp --------------HHHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEECCCCHHHHHTTHHHHHHTTCSEE---CCCTT
T ss_pred --------------cchhhhhhhhhccccccccccCCCCCCEeCCCcccCCCCHHHHHHHHHHHHHCCCCEE---EEcCC
Confidence 33455666666677888888754431 23445556777888998754 55443
Q ss_pred ccCCCCCccCHHHHHHHHhhC
Q 013813 265 EKDGKKFRADWNAIKAVKNAL 285 (436)
Q Consensus 265 ~~~~~~g~ad~~~i~~ik~~~ 285 (436)
. ++ +.|+.+++.+
T Consensus 275 t-----~P---~hI~~l~~~l 287 (300)
T d3bofa2 275 T-----TP---EHVKLFRKVL 287 (300)
T ss_dssp C-----CH---HHHHHHHHHH
T ss_pred C-----CH---HHHHHHHHHH
Confidence 1 13 5566666654
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=85.52 E-value=0.52 Score=44.54 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=69.7
Q ss_pred CChhhHHHHHHHHHHcCccEEEe---ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
++.+.+.+.|+.+.+.|++.+.- -.||......+.|.--+++++++++..++||+. +|.+.+++..+.+. +|.
T Consensus 105 ES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g~~gL~~l~~~k~~~glpvvT--dV~~~~~~~~~~e~--~Di 180 (338)
T d1vr6a1 105 EGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVT--EALGEDDLPKVAEY--ADI 180 (338)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEE--ECSSGGGHHHHHHH--CSE
T ss_pred CCHHHHHHHHHHHHHhCccccccceecccccccccccchHHHHHHHHHHHhhcCceeEE--eccchhhhhhhhce--eee
Confidence 45567788999999999887642 235443222222333478889999999999987 79999999998875 999
Q ss_pred eeeehHHhhCCccchhhh
Q 013813 313 VLSAESLLENPALFAGFR 330 (436)
Q Consensus 313 VmIGRgal~nP~lf~~i~ 330 (436)
++||--++.|..|...+.
T Consensus 181 lQI~A~~~~n~~LL~~~g 198 (338)
T d1vr6a1 181 IQIGARNAQNFRLLSKAG 198 (338)
T ss_dssp EEECGGGTTCHHHHHHHH
T ss_pred EEechhhccCHHHHHHhh
Confidence 999999999999988664
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.32 E-value=1.7 Score=40.51 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=60.1
Q ss_pred CccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc-------Cccc---------------------cc-------CCC
Q 013813 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRD---------------------EK-------DGK 269 (436)
Q Consensus 225 ~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg-------Rt~~---------------------~~-------~~~ 269 (436)
+.+....+-...+.....++++.++++|+..+.+.. |.++ .. ...
T Consensus 121 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T d1tb3a1 121 EGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFP 200 (349)
T ss_dssp TCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC------------
T ss_pred CCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhcccccccccccc
Confidence 345555544444555667777888888887775521 0000 00 000
Q ss_pred CCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 270 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 270 ~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.....|+.+..+++..+.|++.- ||.+.+|+..+.+. |+|++.+.
T Consensus 201 ~~~~~~~~i~~l~~~~~~pii~K-gi~~~~da~~a~~~-G~d~i~vs 245 (349)
T d1tb3a1 201 KASFCWNDLSLLQSITRLPIILK-GILTKEDAELAMKH-NVQGIVVS 245 (349)
T ss_dssp -CCCCHHHHHHHHTTCCSCEEEE-EECSHHHHHHHHHT-TCSEEEEC
T ss_pred CCCCCHHHHHHHHHhcCCCcccc-hhhhhHHHHHHHHh-hccceeee
Confidence 11347999999999999998875 67889999999986 99999986
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=85.28 E-value=12 Score=33.16 Aligned_cols=149 Identities=12% Similarity=0.075 Sum_probs=88.4
Q ss_pred ccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEE
Q 013813 153 TCKEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 231 (436)
Q Consensus 153 ~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVK 231 (436)
......|+++.+.+.+.++..+.++.+++ |+|+|-+ ..|.- ..-..+.+.+-.+.+.+.+++|+.+=
T Consensus 69 ~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~--~pP~~----------~~~s~~~~~~~~~~v~~~~~~pi~iY 136 (293)
T d1f74a_ 69 EAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSA--VTPFY----------YKFSFPEIKHYYDTIIAETGSNMIVY 136 (293)
T ss_dssp HHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEC--CCCCS----------SCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cccCccccccccccccHHHHHHHHHHHHHcCCCEeec--cCccc----------cccchHHHHHHHhcccccCCceEEEE
Confidence 34566799999999999999998887765 9999744 33331 11134455666677777778999875
Q ss_pred eccCC-ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcC
Q 013813 232 IRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 232 iRlg~-~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tG 309 (436)
--... ...-..++.+.+.+.. ..+.+ +. . ..|+..+.++++.. +..| ..|+=. .+...+.. |
T Consensus 137 n~P~~tg~~l~~~~l~~L~~~~-~v~gi----K~---~---~~~~~~~~~~~~~~~~~~v-~~g~~~---~~~~~~~~-G 200 (293)
T d1f74a_ 137 SIPFLTGVNMGIEQFGELYKNP-KVLGV----KF---T---AGDFYLLERLKKAYPNHLI-WAGFDE---MMLPAASL-G 200 (293)
T ss_dssp CCSSCSCHHHHHHHHHHHHTST-TEEEE----EE---C---CSCHHHHHHHHHHCTTSEE-EECCGG---GHHHHHHT-T
T ss_pred eeccceeccccchhhhhhhhcc-ccccc----cc---C---CCCHHHHHHHhhcCCCeEE-EeCccc---ccchhhhC-C
Confidence 32211 1222234444444432 12211 11 1 23566677777654 4444 444322 24445654 9
Q ss_pred cceeeeehHHhhCCccchhhh
Q 013813 310 CEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 310 aDgVmIGRgal~nP~lf~~i~ 330 (436)
++|.+.|-+.+. |.++.++-
T Consensus 201 ~~G~i~~~~n~~-P~~~~~~~ 220 (293)
T d1f74a_ 201 VDGAIGSTFNVN-GVRARQIF 220 (293)
T ss_dssp CCEEEESTHHHH-HHHHHHHH
T ss_pred Ccccccccchhc-chHHHHHH
Confidence 999999987754 77766554
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.76 E-value=2.8 Score=35.84 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=81.8
Q ss_pred ecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-----C
Q 013813 164 FCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-----N 237 (436)
Q Consensus 164 L~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-----~ 237 (436)
+.+.+++.+.+.|+.+.. |+.+|.+|.. +.++++++.++.|+........ .
T Consensus 27 ~~~~~~~~v~~~A~a~~~~Ga~~i~~~~~-----------------------~~~~~ir~~~~~~~~~~~~~~~~~~~~~ 83 (230)
T d1yxya1 27 LYSETGGIMPLMAKAAQEAGAVGIRANSV-----------------------RDIKEIQAITDLPIIGIIKKDYPPQEPF 83 (230)
T ss_dssp TCCTTCCSHHHHHHHHHHHTCSEEEEESH-----------------------HHHHHHHTTCCSCEEEECBCCCTTSCCC
T ss_pred ccCCChHHHHHHHHHHHHCCCeEEEecCh-----------------------hhHHHHHhhhhcchhhhhcccCCcceee
Confidence 456677777777776554 8999988721 3356778888888876654421 1
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.....+....+..+|+|.+.++......... ..-|+.++.++......+ ..+++.|.++++.+.+. |+|.+.++
T Consensus 84 ~~~~~~~~~~~~~~gad~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-v~~~v~t~~~a~~a~~~-Gad~i~~~ 157 (230)
T d1yxya1 84 ITATMTEVDQLAALNIAVIAMDCTKRDRHDG---LDIASFIRQVKEKYPNQL-LMADISTFDEGLVAHQA-GIDFVGTT 157 (230)
T ss_dssp BSCSHHHHHHHHTTTCSEEEEECCSSCCTTC---CCHHHHHHHHHHHCTTCE-EEEECSSHHHHHHHHHT-TCSEEECT
T ss_pred echhHHHHHHHHhcCCCEEEEecccccccch---hhHHHHHHHHHhcCCCce-EecCCCCHHHHHHHHhc-CCCEEEee
Confidence 1222345667778899999876544322111 223677777777654433 33479999999999886 99998764
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=84.23 E-value=6.2 Score=35.77 Aligned_cols=135 Identities=10% Similarity=0.174 Sum_probs=75.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc---c------CccE
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN---L------NVPV 228 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~---~------~iPV 228 (436)
..+++=| |..-+....-.++++.|.|.+-|||.- | +.+...++++.+++. . -.|+
T Consensus 33 TKIIaTi-GPas~~~e~l~~Li~aGvnv~RiN~SH----------g-----~~e~h~~~i~~iR~~~~~~~~~~il~~~~ 96 (282)
T d2g50a2 33 TGIICTI-GPASRSVETLKEMIKSGMNVARMNFSH----------G-----THEYHAETIKNVRTATESFASDPILYRPV 96 (282)
T ss_dssp SEEEEEC-STTTCSHHHHHHHHHHTCCEEEEETTS----------S-----CHHHHHHHHHHHHHHHHTTTTCTTTCCCC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHcCCCEEEEeCCC----------C-----CHHHHHHHHHHHHHHHHHhCCCceecccc
Confidence 3466666 544444444456777899999999841 2 244445555555433 1 2355
Q ss_pred EEEeccC---CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCH---HH
Q 013813 229 SCKIRVF---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHM---ED 300 (436)
Q Consensus 229 sVKiRlg---~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~---ed 300 (436)
.+..-.. .+..+..+ .+...+.|+|+|.+.--.. .-|...++.+.+.. +++|++ -|.+. ++
T Consensus 97 ~I~~d~~~~~l~~~di~d-i~~a~~~~vD~ialSFVrs--------~~DI~~~r~~l~~~g~~~~Iia--KIE~~~al~N 165 (282)
T d2g50a2 97 AVALDTKGPAVSEKDIQD-LKFGVEQDVDMVFASFIRK--------AADVHEVRKILGEKGKNIKIIS--KIENHEGVRR 165 (282)
T ss_dssp EEEEECCCCSSCHHHHHH-HHHHHHTTCSEEEETTCCS--------HHHHHHHHHHHTTTTTTSEEEE--EECSHHHHHT
T ss_pred ccccccccccccchHHHH-HHHhhhccccceeecccCC--------HHHHHHHHHHHHHcCCCceEEE--eecchhhhhc
Confidence 5554432 22233333 4566789999998853211 22444455544432 456665 23333 33
Q ss_pred HHHHHHhcCcceeeeehHHhh
Q 013813 301 VQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 301 a~~~l~~tGaDgVmIGRgal~ 321 (436)
+.+.++. +|||||+||=|+
T Consensus 166 ldeIi~~--sDgIMIaRGDLg 184 (282)
T d2g50a2 166 FDEILEA--SDGIMVARGDLG 184 (282)
T ss_dssp HHHHHHH--SSEEEEEHHHHH
T ss_pred chhhccc--cceeeeeccccc
Confidence 3455665 899999999775
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=84.12 E-value=3.1 Score=35.01 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=45.3
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++.+.++|+|.|-+-.-+ .+.+++..+.+ ++.+.++|||+ .+.+.++.+ +|+|.+.+|.-...-
T Consensus 92 ~~~a~~~g~diImLDN~~------------pe~~~~av~~i~~~~~lEaSGgI~-~~ni~~ya~-~GVD~IS~galt~~a 157 (167)
T d1qapa1 92 LDDALKAGADIIMLDNFN------------TDQMREAVKRVNGQARLEVSGNVT-AETLREFAE-TGVDFISVGALTKHV 157 (167)
T ss_dssp HHHHHHTTCSEEEESSCC------------HHHHHHHHHTTCTTCCEEECCCSC-HHHHHHHHH-TTCSEEECSHHHHEE
T ss_pred HHHHHhcCCcEEEecCCC------------HHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHH-cCCCEEECCcccCCC
Confidence 444567899998774332 23444444443 57889999996 788888876 699999998554443
Q ss_pred Cc
Q 013813 323 PA 324 (436)
Q Consensus 323 P~ 324 (436)
|+
T Consensus 158 ~~ 159 (167)
T d1qapa1 158 RA 159 (167)
T ss_dssp EC
T ss_pred Cc
Confidence 43
|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: KguE-like domain: Hypothetical protein PA2260 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.91 E-value=5.3 Score=34.56 Aligned_cols=128 Identities=9% Similarity=0.030 Sum_probs=72.4
Q ss_pred CCEEEEecCCCHHHHHH-----HHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE--
Q 013813 158 RPLFVQFCANDPEILLN-----AARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS-- 229 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~-----AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs-- 229 (436)
.|+.||+.+-..+...+ ..+.++ .|+|+|||-..+ ... -.+++.+.+.++. .++.+.
T Consensus 2 ~p~~i~l~~fg~~~v~~~~~~~~l~~~a~~G~dgIEi~~~~----------~~~-~~~~~~l~~~~~~----~GL~i~~~ 66 (250)
T d1yx1a1 2 HPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREEL----------FAG-PPDTEALTAAIQL----QGLECVFS 66 (250)
T ss_dssp CCEEEEGGGGCHHHHHHHCGGGGHHHHHHHTCSEEEEEGGG----------CSS-CCCHHHHHHHHHH----TTCEEEEE
T ss_pred CCEEEEhhhcccccccccCHHHHHHHHHHhCCCEEEEeccc----------CCC-cchHHHHHHHHHH----cCCEEEEe
Confidence 48999999877555432 134444 499999995210 000 1233444443333 344443
Q ss_pred ----EEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC----CCCHHHH
Q 013813 230 ----CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRHMEDV 301 (436)
Q Consensus 230 ----VKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG----I~s~eda 301 (436)
.....+...++....++.+.+.|+..|.++...... ..+++.+....+..++.+..--. +.+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v~~~~g~~~~------~~~l~~l~~~a~~~Gv~l~iE~h~~~~~~~~~~~ 140 (250)
T d1yx1a1 67 SPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLPE------QPDLAALGRRLARHGLQLLVENDQTPQGGRIEVL 140 (250)
T ss_dssp EEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEEECCCS------SCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHH
T ss_pred cccccccCchhhHHHHHHHHHHHHHhCCCEEEEeecccch------hHHHHHHHHHHHHcCCEEEEEeCCCcccCCHHHH
Confidence 222223334566677777889999999987543221 24577777777777877654432 2345555
Q ss_pred HHHHH
Q 013813 302 QKCLE 306 (436)
Q Consensus 302 ~~~l~ 306 (436)
..++.
T Consensus 141 ~~~~~ 145 (250)
T d1yx1a1 141 ERFFR 145 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=83.77 E-value=2 Score=38.41 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=43.7
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR 296 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~ 296 (436)
|.+.-+.+++|+.++++|+|+||||.|.-. . .+..+-+..+++.+++|+=..|...
T Consensus 20 g~~~Pd~~~~a~~~~~~GadgITvH~R~Dr----R--HI~~~Dv~~l~~~~~~~lNlE~a~~ 75 (242)
T d1m5wa_ 20 GTAYPDPVQAAFIAEQAGADGITVHLREDR----R--HITDRDVRILRQTLDTRMNLEMAVT 75 (242)
T ss_dssp SCCCSCHHHHHHHHHTTTCSEEEEECCTTC----S--SSCHHHHHHHHHHCSSEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHcCCCeEEeCCCCCc----c--ccchHHHHHHHHHhhcccccccccc
Confidence 445568899999999999999999999632 1 3455667888888888887777664
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.75 E-value=7.3 Score=30.03 Aligned_cols=91 Identities=9% Similarity=0.068 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
|-..+.+++..+-+..|.-|..= .+.+++ .+.+.+.-.|.|.+--...+ . --++.++.+++..++|
T Consensus 10 Dd~~~~~~l~~~L~~~g~~v~~a----~~~~~a---l~~l~~~~~dlii~D~~mp~----~---~G~~~~~~~r~~~~~p 75 (121)
T d1xhfa1 10 DELVTRNTLKSIFEAEGYDVFEA----TDGAEM---HQILSEYDINLVIMDINLPG----K---NGLLLARELREQANVA 75 (121)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEEE----SSHHHH---HHHHHHSCCSEEEECSSCSS----S---CHHHHHHHHHHHCCCE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEE----CChHHH---HHHHHhcCCCEEEeecccCC----c---cCcHHHHHHHhcCCCc
Confidence 33444555555444455433322 233444 44555677887776533221 1 1268889999888999
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVm 314 (436)
||.-.|-.+.++..++++. ||+..+
T Consensus 76 ii~lt~~~~~~~~~~a~~~-Ga~dyl 100 (121)
T d1xhfa1 76 LMFLTGRDNEVDKILGLEI-GADDYI 100 (121)
T ss_dssp EEEEESCCSHHHHHHHHHH-TCSEEE
T ss_pred EEEEECCCCHHHHHHHHHc-CCCEEE
Confidence 9999999999999999987 888754
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=83.41 E-value=17 Score=33.40 Aligned_cols=204 Identities=15% Similarity=0.078 Sum_probs=115.3
Q ss_pred CcEE---EccCCCCCcHHHHHHHHHh---CCCeEE-eCcccchhhccChhhhhh---hh----hccCCCCCEEEEecCCC
Q 013813 103 PKLI---VAPMVDNSELPFRMLCRRY---GAEAAY-TPMLHSRIFTESEKYRNE---EF----ATCKEDRPLFVQFCAND 168 (436)
Q Consensus 103 ~~i~---lAPM~gvtd~~fR~l~~~~---Ga~l~~-Temisa~~l~~~~~~~~~---~~----~~~~~e~plivQL~g~d 168 (436)
-||+ +=|.+|.|-..|..+|.++ |.|++- -|.+....+..-.+.... .+ ...-...-..+++.+.+
T Consensus 17 RPLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~~av~~a~~eTG~~k~y~~nit~~~ 96 (325)
T d1wdda1 17 RPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGT 96 (325)
T ss_dssp SCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSS
T ss_pred CCeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHHHHHHHHHHhhCCceeEEeccCCCC
Confidence 3554 4588999999999999887 678754 555555444322211110 01 11112244678998889
Q ss_pred HHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-------Ch-h
Q 013813 169 PEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-------NL-Q 239 (436)
Q Consensus 169 ~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-------~~-~ 239 (436)
++++.+-++.+ +.|++++-+|... +| ..-+..+.+.. +..++|+.. .|.+. +. -
T Consensus 97 ~~em~~ra~~a~e~G~~~~mi~~~~---------~G------~~a~~~l~~~~-~~~~l~ih~-Hra~~ga~tr~~~~Gi 159 (325)
T d1wdda1 97 CEEMIKRAVFARELGVPIVMHDYLT---------GG------FTANTSLAHYC-RDNGLLLHI-HRAMHAVIDRQKNHGM 159 (325)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEHHH---------HC------HHHHHHHHHHH-HHHTCEEEE-ECTTHHHHHSCSSSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccc---------cc------HHHHHHHHHhh-hhcCceeec-ccccccccccCCCCCc
Confidence 99998888766 4599999998421 12 11122222221 123677766 34431 10 1
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh----------------C---CCcEEEccCCCCHHH
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA----------------L---RIPVLANGNVRHMED 300 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~----------------~---~iPVianGGI~s~ed 300 (436)
...-+.+.+.=+|+|.+++..-. .+.......-.+.+..++.. . .+--+.+||+. +..
T Consensus 160 s~~vl~kl~RLaGaD~ih~~~~~--Gk~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~q~~~~~k~~~Pv~sGG~~-~g~ 236 (325)
T d1wdda1 160 HFRVLAKALRMSGGDHIHAGTVV--GKLEGEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIH-VWH 236 (325)
T ss_dssp CHHHHHHHHHHHCCSEEECCCSS--SSBCCCHHHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCCEEEEESSCC-GGG
T ss_pred cHHHHHHHHHHcCCCccccCccc--cCcCCCHHHHHHHHHHHHhhhcccccccCccccCcccCCCCeeeecCCCCC-HhH
Confidence 23346788888999999875432 11111000011222233221 0 12234567765 677
Q ss_pred HHHHHHhcCccee-eeehHHhhCCccc
Q 013813 301 VQKCLEETGCEGV-LSAESLLENPALF 326 (436)
Q Consensus 301 a~~~l~~tGaDgV-mIGRgal~nP~lf 326 (436)
+..+++..|-|.| ++|-|++..|+=.
T Consensus 237 vp~~~~~~G~D~il~~GGGi~gHP~G~ 263 (325)
T d1wdda1 237 MPALTEIFGDDSVLQFGGGTLGHPWGN 263 (325)
T ss_dssp HHHHHHHHCSSSEEECSHHHHTSTTCH
T ss_pred HHHHHHhcCCcEEEEcCcceecCCCcc
Confidence 7788888888864 5688999999843
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=83.23 E-value=7.5 Score=35.20 Aligned_cols=203 Identities=16% Similarity=0.160 Sum_probs=116.4
Q ss_pred HHHHhC--CCcE---EEccCCCCCcHHHHHHHHHh---CCCeEE-eCcccchhhccChhhh-------hhhhhccCCCCC
Q 013813 96 HWTKLG--RPKL---IVAPMVDNSELPFRMLCRRY---GAEAAY-TPMLHSRIFTESEKYR-------NEEFATCKEDRP 159 (436)
Q Consensus 96 ~~~~lg--~~~i---~lAPM~gvtd~~fR~l~~~~---Ga~l~~-Temisa~~l~~~~~~~-------~~~~~~~~~e~p 159 (436)
.|+.+| .-|+ ++=|.+|.|-..|..+|.++ |.|++- -|.+....+..-.+.. ...-...-+..-
T Consensus 10 ~R~~lgv~~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~~TG~~~l 89 (283)
T d1ykwa1 10 LRDILNAHGRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKI 89 (283)
T ss_dssp HHHHHTCCSSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCE
T ss_pred HHHHhCCCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHHHHHHHHHHHhCCeeE
Confidence 556665 2344 45688999999999999887 668754 5555544443222111 000111122344
Q ss_pred EEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC--
Q 013813 160 LFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-- 236 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-- 236 (436)
..++|. .+++++.+-++.+ +.|++++=+|.. -+| ...++.+++..++|+..= |.+.
T Consensus 90 ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~---------~~G----------~~a~~~l~~~~~lpi~~H-~a~~g~ 148 (283)
T d1ykwa1 90 YLANIT-DEVDSLMEKHDVAVRNGANALLINAL---------PVG----------LSAVRMLSNYTQVPLIGH-FPFIAS 148 (283)
T ss_dssp EEEECC-CCGGGHHHHHHHHHHHTCCEEEEEHH---------HHC----------HHHHHHHHHHCSSCEEEE-CTTTHH
T ss_pred EeeecC-CCHHHHHHHHHHHHHhCCCEEEEecc---------cch----------HHHHHHHHhhcCCCeEee-ecccee
Confidence 668886 4778887777665 458899888841 012 123445555567787654 2221
Q ss_pred -------ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHH
Q 013813 237 -------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 237 -------~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~ 304 (436)
.+ ...-+++...=+|+|.|++.+-. .+...+..--++....+.+. .-+||+ +||+. +..+..+
T Consensus 149 ~~r~~~~Gi-s~~vl~KL~RLaGaD~ih~~~~g--g~~~~~~e~~~~~~~~~~~~~~~~k~~~Pv~-sGG~~-~~~vp~~ 223 (283)
T d1ykwa1 149 FSRMEKYGI-HSKVMTKLQRLAGLDAVIMPGFG--DRVMTPEEEVLENVIECTKPMGRIKPCLPVP-GGSDS-ALTLQTV 223 (283)
T ss_dssp HHCSTTSEE-CHHHHHHHHHHHTCSEEEEECSS--TTSSSCHHHHHHHHHHHHSCCTTCCCCEEEE-ECSBC-TTTHHHH
T ss_pred eccCcCCCc-cHHHHHHHHHHcCCCceeecCCc--ccccCchHHHHHHHHHhcCcccccCCceeec-cCCcc-hhhhHHH
Confidence 01 23347888888999999875321 11111100011222222221 125664 67765 6778888
Q ss_pred HHhcC-cceee-eehHHhhCCc
Q 013813 305 LEETG-CEGVL-SAESLLENPA 324 (436)
Q Consensus 305 l~~tG-aDgVm-IGRgal~nP~ 324 (436)
++..| .|.+. +|-|++..|+
T Consensus 224 ~~~~G~~Dvil~aGGGi~gHP~ 245 (283)
T d1ykwa1 224 YEKVGNVDFGFVPGRGVFGHPM 245 (283)
T ss_dssp HHHHCSSCSEECBSSSSSSCTT
T ss_pred HHhcCCceEEEecCcccccCCC
Confidence 88888 47654 7889999998
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=82.42 E-value=1.6 Score=39.39 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=62.2
Q ss_pred HHHHHHHHhcccCccEEEEeccC-CChhhHHHHHHHHHHcCccEEEeccCccccc---------------CCCCCccCHH
Q 013813 213 VKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWN 276 (436)
Q Consensus 213 v~eIv~av~~~~~iPVsVKiRlg-~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~---------------~~~~g~ad~~ 276 (436)
+.+.++.+++.-..-+..=+-.| ++.+.+.++++.+.++|+|.|-+-=-..++. .+.+..--++
T Consensus 4 i~~~f~~~~~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~ 83 (261)
T d1rd5a_ 4 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLE 83 (261)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhh
Confidence 34555666554333344444444 5788899999999999999998832222211 1111111256
Q ss_pred HHHHHHhhCCCcEEEccCCCCHHH--HHHHHHhcCcceeee
Q 013813 277 AIKAVKNALRIPVLANGNVRHMED--VQKCLEETGCEGVLS 315 (436)
Q Consensus 277 ~i~~ik~~~~iPVianGGI~s~ed--a~~~l~~tGaDgVmI 315 (436)
.++++++..++|++.-+-.+..-. ++++ .+.|+|||+|
T Consensus 84 ~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~-~~~GvdG~Ii 123 (261)
T d1rd5a_ 84 MLREVTPELSCPVVLLSYYKPIMFRSLAKM-KEAGVHGLIV 123 (261)
T ss_dssp HHHHHGGGCSSCEEEECCSHHHHSCCTHHH-HHTTCCEEEC
T ss_pred hhhcccccccCceeeeeeecchhhHHHHHH-HhcCceeeee
Confidence 677788778899988876544322 2333 3459999986
|
| >d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Leishmania mexicana [TaxId: 5665]
Probab=82.09 E-value=0.33 Score=43.99 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=35.4
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
++||++.|.|. ++.+.+++...++||+.||++.|. +. |.++
T Consensus 204 ~i~ilYGGSV~-~~N~~~i~~~~~vdG~LVG~ASl~-~~-F~~I 244 (249)
T d1n55a_ 204 KLRILYGGSVN-AANAATLYAKPDINGFLVGGASLK-PE-FRDI 244 (249)
T ss_dssp HCEEEEESSCC-TTTHHHHHTSTTCCEEEESGGGGS-TT-HHHH
T ss_pred cccEEEcCCCC-HhHHHHHhcCCCCCeEEeehhhcC-HH-HHHH
Confidence 48999999997 588889998889999999999995 87 7654
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.86 E-value=7.8 Score=29.62 Aligned_cols=91 Identities=11% Similarity=0.106 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
|-..+.+++..+-+..+.-|..= .+..+++ +.+++...|.|.+--.-.+ .--++.++++++..++|
T Consensus 8 Dd~~~~~~l~~~L~~~g~~v~~a----~~~~eal---~~~~~~~~dlillD~~mp~-------~~G~~~~~~i~~~~~~p 73 (117)
T d2a9pa1 8 DEKPISDIIKFNMTKEGYEVVTA----FNGREAL---EQFEAEQPDIIILDLMLPE-------IDGLEVAKTIRKTSSVP 73 (117)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEE----SSHHHHH---HHHHHHCCSEEEECSSCSS-------SCHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEE----CCHHHHH---HHHHhcCCCEEEeccccCC-------CCccHHHHHHHhCCCCC
Confidence 33445555555444445544322 2334444 4455667887766432211 12268899999888899
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVm 314 (436)
||.--+-.+.++..++++. ||+..+
T Consensus 74 vI~lt~~~~~~~~~~a~~~-Ga~d~l 98 (117)
T d2a9pa1 74 ILMLSAKDSEFDKVIGLEL-GADDYV 98 (117)
T ss_dssp EEEEESCCSHHHHHHHHHH-TCSEEE
T ss_pred EEEEecCCCHHHHHHHHHc-CCCEEE
Confidence 9998889999999999986 888653
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=81.66 E-value=4.7 Score=34.68 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=59.7
Q ss_pred HHHHHHHHhccc-CccEEEEeccCC-ChhhHHHHHHHHHHcCccEEEeccCcccccCCC----------CCccCHHHHHH
Q 013813 213 VKSLVEKLALNL-NVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK----------KFRADWNAIKA 280 (436)
Q Consensus 213 v~eIv~av~~~~-~iPVsVKiRlg~-~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~----------~g~ad~~~i~~ 280 (436)
+.++.+.+...+ ++||++-+- |. +..+....++.++++|+.+|.+-.+... ..+. ....+.+++-.
T Consensus 73 ~~~~a~~i~~~v~~iPviaD~d-G~g~~~nv~rtv~~~~~aG~agI~~~pk~g~-~~g~~~~~~e~a~~~~~~~~d~lii 150 (197)
T d2p10a1 73 VVDMAREVLPVVRHTPVLAGVN-GTDPFMVMSTFLRELKEIGFAGVQNFPTVGL-IDGLFRQNLEETGMSYAQEVEMIAE 150 (197)
T ss_dssp HHHHHHHHGGGCSSSCEEEEEC-TTCTTCCHHHHHHHHHHHTCCEEEECSCGGG-CCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCceEEecC-CCCcchhHHHHHHHHHHcCCeEEeccccccC-ccchhhhhHHHHHHHhccCccHHHH
Confidence 445555555544 799999987 54 4567788899999999999987544221 0000 00011122222
Q ss_pred HHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 281 ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+. +-. +..|=-...+.++.+.+. |||.|.+
T Consensus 151 ARt--da~-~~~g~~~Ai~Ra~ay~eA-GAD~i~~ 181 (197)
T d2p10a1 151 AHK--LDL-LTTPYVFSPEDAVAMAKA-GADILVC 181 (197)
T ss_dssp HHH--TTC-EECCEECSHHHHHHHHHH-TCSEEEE
T ss_pred HHH--hhh-hhccHHHHHHHHHHHHHc-CCCEEEE
Confidence 222 222 235666889999999887 9999987
|
| >d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Thermotoga maritima [TaxId: 2336]
Probab=80.75 E-value=9.1 Score=32.73 Aligned_cols=128 Identities=10% Similarity=0.121 Sum_probs=69.5
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 157 DRPLFVQFCAND-PEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d-~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.+++.=+=-+| |.....+++.+.. |+|.+.+|.-| + .+-+.+.++ ..+.-+..-.-+
T Consensus 46 ~~~IflDlK~~DIpnTv~~~v~~~~~~g~d~itvH~~~-----------G-----~~~l~~a~~----~~~~~~l~Vt~L 105 (198)
T d1vqta1 46 NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCA-----------G-----YESVERALS----ATDKHVFVVVKL 105 (198)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGG-----------C-----HHHHHHHHH----HCSSEEEEECCC
T ss_pred CCcEEEEehhcCccHHHHHHHHHHhhccccEEEEEccC-----------c-----hhhhhHhhh----hccccceeEEEe
Confidence 456666665555 6777778777765 68999999532 2 122233332 333322222222
Q ss_pred ---CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC------------CHH
Q 013813 235 ---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR------------HME 299 (436)
Q Consensus 235 ---g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~------------s~e 299 (436)
....++..+.+..+.+.|++.++.. - ....+++...-.++ .=||+ ++
T Consensus 106 tS~~~~~~~~~~~~~~l~~~g~~~vv~~-~---------------~~~~~~~~~~~~ii-tPGIr~~~~~dDQkr~~t~- 167 (198)
T d1vqta1 106 TSMEGSLEDYMDRIEKLNKLGCDFVLPG-P---------------WAKALREKIKGKIL-VPGIRMEVKADDQKDVVTL- 167 (198)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTCEEECCH-H---------------HHHHHTTTCCSCEE-ECCBC---------CCBCH-
T ss_pred eccccchHHHHHHHHHHHHhccCccccc-c---------------hhhhhhhhcccccc-ccccccCCCCCCcccccCH-
Confidence 2234556666777888999876421 1 11233333322222 22332 22
Q ss_pred HHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 300 DVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 300 da~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
+.++. |||.++|||+++..++-.
T Consensus 168 ---~ai~~-GAd~iVVGR~It~s~dp~ 190 (198)
T d1vqta1 168 ---EEMKG-IANFAVLGREIYLSENPR 190 (198)
T ss_dssp ---HHHTT-TCSEEEESHHHHTSSCHH
T ss_pred ---HHHHc-CCCEEEECCcccCCCCHH
Confidence 23454 999999999998865543
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.37 E-value=11 Score=33.52 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=84.0
Q ss_pred cCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC---CChhhH
Q 013813 165 CANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---PNLQDT 241 (436)
Q Consensus 165 ~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg---~~~~d~ 241 (436)
-|-.+..+....+.+.++.|.+-+- +|.+.+-..+.+++.++-.+++ ++++...=-+. ..-...
T Consensus 21 kGlgl~~leD~Le~ag~yID~~K~g------------~Gt~~l~p~~~l~eKI~l~~~~-~V~v~~GGtlfE~a~~qg~~ 87 (251)
T d1qwga_ 21 KGLPPKFVEDYLKVCGDYIDFVKFG------------WGTSAVIDRDVVKEKINYYKDW-GIKVYPGGTLFEYAYSKGKF 87 (251)
T ss_dssp SSCCHHHHHHHHHHHGGGCSEEEEC------------TTGGGGSCHHHHHHHHHHHHTT-TCEEEECHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHhhhhheeEEEec------------CceeeecCHHHHHHHHHHHHHc-CCeEeCCcHHHHHHHHcCCH
Confidence 4566777777777777888998886 5666666778888888887755 66665441110 000124
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhhCCCcEEEccCCC--------CHHH----HHHHHHhc
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLANGNVR--------HMED----VQKCLEET 308 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~~~iPVianGGI~--------s~ed----a~~~l~~t 308 (436)
.++.+.+.+.|.+.|-|...+.+-. .-++ ++|+.+++. ++-|+.-=|.. ++++ +++.|+.
T Consensus 88 ~~y~~~~~~lGf~~iEiSdg~~~i~-----~~~~~~~I~~~~~~-G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~Lea- 160 (251)
T d1qwga_ 88 DEFLNECEKLGFEAVEISDGSSDIS-----LEERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA- 160 (251)
T ss_dssp HHHHHHHHHHTCCEEEECCSSSCCC-----HHHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCC-----HHHHHHHHHHHHhC-CCEEeecccCCCCCCccccCHHHHHHHHHHHHHC-
Confidence 5678888999999999987765310 1122 445555543 45555444444 3343 6667876
Q ss_pred Ccceeee
Q 013813 309 GCEGVLS 315 (436)
Q Consensus 309 GaDgVmI 315 (436)
||+.||+
T Consensus 161 GA~~Vii 167 (251)
T d1qwga_ 161 GADYVII 167 (251)
T ss_dssp TCSEEEE
T ss_pred CCceeEe
Confidence 9999998
|