Citrus Sinensis ID: 013831

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
Protein Sequence
MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQRRGSAAFG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEcccccEEEEccccccccEEccEEEcccccccEEEEEEEEEEcccccccccccccccEEEEEEccccccccccccccccEEEcccccEEEcccccccccccccccEEEEEEEcccccccEEEEEEccccccccccccccccccccccccHHccccccccEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHcccccEEEEccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccccHHHccccccccccccccccccccEEEEccccccccEEEccccccccccccccHHHHHHcccccccccccEEEEEEEEEEEccccccccccccccEEEEEEEcccccccccccccccccccccccEcccccccccccccccccEEEEEEEcccccEEEEEEEEccccccEEEEEccccccccccccccHHHHcccccccEEEEEcEEEEEEcccccccccccccEEEEccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEccHHHHHHHccccccEccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHcHcccccEEEEEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
matakrelelpdgdkpesvvkkakvddpvsdssasgprsqkqrvvlnpadcdldfdiednglkssglhqegfaycwsgaranvginggkycfgckivstqpvdmedtppdqqhvcrvgtsrgddpvgklgeteqsfgfggtgkfshggnflnfgekfgvgDTIICAIdleskplatigfakngkwlgtakqfdagsnglgvvdsavkerqcesavfphiLLKNVVVVMQFSVeqglipvegYKSWVSAlddgnsvlgptfcnmkdCEVMMMvglpasgkttwAEKWvkdhpekrYILLGTNLILEQmkvpgllrkhnYSERFQCLMGRANAIFDVLLSrasrtprnfiidqTNVFKSARKRKLRLFVNFRKIAVvvfpkpedlkIRSVKRFKEMGKEVPADAVNNMLANyvlpvnkdtpgsdelfdqrrgsaafg
Flexible Loop (DISEMBL)
matakrelelpdgdkpesvvkkakvddpvsdssasgprsqkqrvVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAsrtprnfiidqtnvfksarKRKLRLFVnfrkiavvvfpkpedlkirSVKRFKEMGKEVPADAVNNMLANYVLPVNkdtpgsdelfdqrrgsaafg
Low Complexity Region (SEG)
MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSfgfggtgkfshggnfLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQRRGSAAFG
Disordered region (IsUnstruct)
********************************************VLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVST************************************FGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV*********************
Disordered Region (DISOPRED)
*****************************************QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVS**************************LPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP*********ERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPED*****************ADAVNNMLANYVLPVNKDTPGSDELFDQRRGS****
Disordered Region (DISEMBL)
*****************************************QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQRRGSAAFG
Disordered Region (DISPRO)
***************************************QKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNK*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQRRGSAAFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	435	2.2.26 [Sep-21-2011]
Q8VDM6	859	Heterogeneous nuclear rib	yes	no	0.811	0.410	0.402	2e-68
Q9BUJ2	856	Heterogeneous nuclear rib	no	no	0.811	0.412	0.4	3e-68
Q00839	825	Heterogeneous nuclear rib	no	no	0.813	0.429	0.360	1e-53
Q8VEK3	800	Heterogeneous nuclear rib	no	no	0.813	0.442	0.357	3e-53
Q00PI9	745	Heterogeneous nuclear rib	no	no	0.783	0.457	0.349	2e-50
Q1KMD3	747	Heterogeneous nuclear rib	no	no	0.783	0.456	0.347	2e-49
Q55CP6	765	Probable ATP-dependent RN	yes	no	0.365	0.207	0.260	2e-09
Q5XH91	740	ATP-dependent RNA helicas	no	no	0.397	0.233	0.320	4e-07
A2VD92	740	ATP-dependent RNA helicas	N/A	no	0.397	0.233	0.316	4e-06
Q0IIK5	740	ATP-dependent RNA helicas	no	no	0.363	0.213	0.310	2e-05

>sp|Q8VDM6|HNRL1_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus musculus GN=Hnrnpul1 PE=1 SV=1

 Score =  260 bits (664), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 211/375 (56%), Gaps = 22/375 (5%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPV- 102
           V ++  +CDL F +  +      L  EGFAY WSGARA+ G+  G+ CF  KI     V 
Sbjct: 212 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVK 271

Query: 103 DMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
            +  T PD  HV R+G S  D    +LGE   S+G+GGTGK S    F N+G+KF   D 
Sbjct: 272 HLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDV 329

Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
           I C  D E      + F KNGKW+G A  F      LG             A++PH+L+K
Sbjct: 330 IGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALGG-----------QALYPHVLVK 376

Query: 223 NVVVVMQFSVEQ----GLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASG 278
           N  V   F         ++P   +   +   +     +GP   +  +CE++MMVGLPA+G
Sbjct: 377 NCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTIGPK--SKAECEILMMVGLPAAG 434

Query: 279 KTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS 338
           KTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+ 
Sbjct: 435 KTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQ 494

Query: 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEV 398
            A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R+VKR  E GK+V
Sbjct: 495 IAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTVKRTDEEGKDV 554

Query: 399 PADAVNNMLANYVLP 413
           P  AV  M AN+ LP
Sbjct: 555 PDHAVLEMKANFTLP 569

Acts as a basic transcriptional regulator. Represses basic transcription driven by several virus and cellular promoters. When associated with BRD7, activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Plays also a role in mRNA processing and transport. Binds avidly to poly(G) and poly(C) RNA homopolymers in vitro.
Mus musculus (taxid: 10090)

>sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens GN=HNRNPUL1 PE=1 SV=2

 Score =  259 bits (662), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 211/375 (56%), Gaps = 22/375 (5%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPV- 102
           V ++  +CDL F +  +      L  EGFAY WSGARA+ G+  G+ CF  KI     V 
Sbjct: 211 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVK 270

Query: 103 DMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
            +  T PD  HV R+G S  D    +LGE   S+G+GGTGK S    F N+G+KF   D 
Sbjct: 271 HLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDV 328

Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
           I C  D E      + F KNGKW+G A  F      LG             A++PH+L+K
Sbjct: 329 IGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALGG-----------QALYPHVLVK 375

Query: 223 NVVVVMQFSVEQ----GLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASG 278
           N  V   F         ++P   +   +   +     +GP   +  +CE++MMVGLPA+G
Sbjct: 376 NCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPK--SKAECEILMMVGLPAAG 433

Query: 279 KTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS 338
           KTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+ 
Sbjct: 434 KTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQ 493

Query: 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEV 398
            A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+V
Sbjct: 494 IAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDV 553

Query: 399 PADAVNNMLANYVLP 413
           P  AV  M AN+ LP
Sbjct: 554 PDHAVLEMKANFTLP 568

Acts as a basic transcriptional regulator. Represses basic transcription driven by several virus and cellular promoters. When associated with BRD7, activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Plays also a role in mRNA processing and transport. Binds avidly to poly(G) and poly(C) RNA homopolymers in vitro.

Homo sapiens (taxid: 9606)

>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 195/372 (52%), Gaps = 18/372 (4%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           V L+  +CDL F I  + L +S L  E FA+ W+G RA+ G++ GK CF  K+    PV 
Sbjct: 288 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 347

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T     H  R+G S     +  LGE E S+G+   G  +      ++GEKF   D I
Sbjct: 348 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 406

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C  + ES  +  + +AKNG+ LG A +               KE      +FPH+L  N
Sbjct: 407 TCFANFESDEV-ELSYAKNGQDLGVAFKIS-------------KEVLAGRPLFPHVLCHN 452

Query: 224 VVVVMQF-SVEQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
             V   F   E+   P+    +++  +   + V GP      KDCEV+MM+GLP +GKTT
Sbjct: 453 CAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 512

Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
           W  K   ++P K Y +LGTN I+++M V G  ++   + +   L+ RA       +  A+
Sbjct: 513 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 571

Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
           R  RNFI+DQTNV  +A++RK+ LF  F++ AVVV PK ED K R+ K+ +  GK++P  
Sbjct: 572 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 631

Query: 402 AVNNMLANYVLP 413
           AV  M  N+ LP
Sbjct: 632 AVLKMKGNFTLP 643

Component of the CRD-mediated complex that promotes MYC mRNA stabilization. Binds to pre-mRNA. Has high affinity for scaffold-attached region (SAR) DNA. Binds to double- and single-stranded DNA and RNA.

Homo sapiens (taxid: 9606)

>sp|Q8VEK3|HNRPU_MOUSE Heterogeneous nuclear ribonucleoprotein U OS=Mus musculus GN=Hnrnpu PE=1 SV=1

 Score =  209 bits (533), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 196/372 (52%), Gaps = 18/372 (4%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           V L+  +CDL F I  + L +S L  E FA+ W+G RA+ G++ GK CF  K+    PV 
Sbjct: 264 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 323

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T     H  R+G S     +  LGE E S+G+   G  +      ++GEKF   D I
Sbjct: 324 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 382

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C  + E+  +  + +AKNG+ LG A +               KE   +  +FPH+L  N
Sbjct: 383 TCFANFETDEV-ELSYAKNGQDLGVAFKIS-------------KEVLADRPLFPHVLCHN 428

Query: 224 VVVVMQF-SVEQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
             V   F   E+   P+    +++  +   + V GP      KDCEV+MM+GLP +GKTT
Sbjct: 429 CAVEFNFGQKEKPYFPIPEDCTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 488

Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
           W  K   ++P K Y +LGTN I+++M V G  ++   + +   L+ RA       +  A+
Sbjct: 489 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 547

Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
           R  RNFI+DQTNV  +A++RK+ LF  F++ AVVV PK ED K R+ K+ +  GK++P  
Sbjct: 548 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 607

Query: 402 AVNNMLANYVLP 413
           AV  M  N+ LP
Sbjct: 608 AVLKMKGNFTLP 619

Component of the CRD-mediated complex that promotes MYC mRNA stabilization. Binds to pre-mRNA. Has high affinity for scaffold-attached region (SAR) DNA. Binds to double- and single-stranded DNA and RNA.

Mus musculus (taxid: 10090)

>sp|Q00PI9|HNRL2_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Mus musculus GN=Hnrnpul2 PE=1 SV=2

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 191/383 (49%), Gaps = 42/383 (10%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           V L+    DL F I  +      L  E F   WSGAR+  G+  GK CF  K+    P+ 
Sbjct: 244 VNLDTYTSDLHFQISKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMK 303

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T   +  + RVG S  D    +LGE E S+GF G G  +  G F  FG+ FG  D I
Sbjct: 304 EGCT---EVSLLRVGWSV-DFSCSQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVI 359

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C  + E++ +  + F+KNG+ LG A +               KE   + A+ PH+L KN
Sbjct: 360 GCFANFETEEV-ELSFSKNGEDLGVAFRIS-------------KESLADRALLPHVLCKN 405

Query: 224 VVVVMQFSVEQG-------------LIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMM 270
            VV + F  ++               +PVE         +   + + P    +++CEV++
Sbjct: 406 CVVELNFGQKEEPFFPPPEEFVFIHAVPVE---------ERVRTAVPPK--TIEECEVIL 454

Query: 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330
           MVGLP SGKT WA K+ KD+PE+RY +LG   +L QM++ GL       +    L+ +A+
Sbjct: 455 MVGLPGSGKTQWALKYAKDNPERRYNVLGAETVLTQMRMKGLEEPEMDPKSRDLLVQQAS 514

Query: 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKR 390
                L+  ASR+ RNFI+DQ NV+ S ++RKL LF  F +  VVV P  ED K R   R
Sbjct: 515 QCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKRRLELR 574

Query: 391 FKEMGKEVPADAVNNMLANYVLP 413
            +  G +VP   +  M AN+ LP
Sbjct: 575 KEVEGDDVPESIMLEMKANFSLP 597

Mus musculus (taxid: 10090)

>sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo sapiens GN=HNRNPUL2 PE=1 SV=1

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 192/383 (50%), Gaps = 42/383 (10%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           V L+    DL F +  +      L  E F   WSGAR+  G+  GK CF  K+    P+ 
Sbjct: 246 VNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMK 305

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T   +  + RVG S  D    +LGE E S+GF G G  +  G F  FG+ FG  D I
Sbjct: 306 EGCT---EVSLLRVGWSV-DFSRPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVI 361

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C  + E++ +  + F+KNG+ LG A           +   ++ +R    A+ PH+L KN
Sbjct: 362 GCFANFETEEV-ELSFSKNGEDLGVA---------FWISKDSLADR----ALLPHVLCKN 407

Query: 224 VVVVMQFSVEQG-------------LIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMM 270
            VV + F  ++               +PVE         +   + + P    +++CEV++
Sbjct: 408 CVVELNFGQKEEPFFPPPEEFVFIHAVPVE---------ERVRTAVPPK--TIEECEVIL 456

Query: 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330
           MVGLP SGKT WA K+ K++PEKRY +LG   +L QM++ GL       +    L+ +A+
Sbjct: 457 MVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQAS 516

Query: 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKR 390
                L+  ASRT RNFI+DQ NV+ S ++RKL LF  F +  VVV P  ED K R   R
Sbjct: 517 QCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELR 576

Query: 391 FKEMGKEVPADAVNNMLANYVLP 413
            +  G +VP   +  M AN+ LP
Sbjct: 577 KEVEGDDVPESIMLEMKANFSLP 599

Homo sapiens (taxid: 9606)

>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=Dictyostelium discoideum GN=ddx1 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 33/192 (17%)

Query: 52  DLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQ 111
           +LD    D  +   GL  +  +  W G +A  GI+ GK+ +             ++    
Sbjct: 102 ELDQIDRDKNMAVDGLICQSRSSDWCGIKATKGISSGKFYY-------------ESIVRD 148

Query: 112 QHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLES 171
           + +CR+G +        +G  + S+G+GGTGK SH   F+++G+ FG  D I C I+ + 
Sbjct: 149 EGLCRIGFALKKSS-RNIGTDKFSWGYGGTGKKSHESKFIDYGKPFGNNDVIGCYINFDE 207

Query: 172 KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFS 231
           +    IGF KNG+  G A  F++ +                   +P ++LKN  +   F 
Sbjct: 208 E---IIGFTKNGQDFGEAFTFNSKA----------------GIFYPALVLKNAEMEFNFG 248

Query: 232 VEQGLIPVEGYK 243
            +     ++GYK
Sbjct: 249 SKPMKHDLKGYK 260

Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis GN=ddx1 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 94/212 (44%), Gaps = 39/212 (18%)

Query: 46  LNPADCDLDFDIEDNGL--KSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           +NP D    F I  +GL  +S  + +      W G R+  G+N GKY +           
Sbjct: 93  MNPYDRGSSFAIGSDGLCCQSREIKE------WHGCRSTRGVNKGKYYY----------- 135

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
             +     Q +CRVG S     +  LG  +  FGFGGTGK SH   F N+GE+F + DTI
Sbjct: 136 --EVSCHDQGLCRVGWSTLQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTI 192

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C ID+++    T+ ++KNGK LG A Q  A                   AVF   +LKN
Sbjct: 193 GCYIDIDN---GTVKYSKNGKDLGLAFQIPAHLKN--------------QAVFASCVLKN 235

Query: 224 VVVVMQFSVEQGLIPVEGYKSWVSALDDGNSV 255
             +   F  E    P +     +S   DG+ V
Sbjct: 236 AELKFNFGEEDFKFPPKDGFVALSKAPDGHVV 267

Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity. Acts as a positive regulator of transcription. May be involved in 3'-end cleavage and polyadenylation of pre-mRNAs. Binds DNA and RNA.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus laevis GN=ddx1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 39/212 (18%)

Query: 46  LNPADCDLDFDIEDNGL--KSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           +NP D    F I  +GL  +S  + +      W G R+  G+N GKY +           
Sbjct: 93  MNPYDRGSAFAIGSDGLCCQSREIKE------WHGCRSTRGVNKGKYYY----------- 135

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
             +     Q +CRVG S     +  LG  +  FGFGGTGK SH   F N+GE+F + DTI
Sbjct: 136 --EVSCHDQGLCRVGWSTLSASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTI 192

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C +D+++   + + F+KNGK LG A Q          + S +K +    A F   +LKN
Sbjct: 193 GCYLDIDN---SIVKFSKNGKDLGLAFQ----------IPSHMKNQ----AFFTSCVLKN 235

Query: 224 VVVVMQFSVEQGLIPVEGYKSWVSALDDGNSV 255
             +   F  E    P +     +S   DG+ V
Sbjct: 236 AELKFNFGEEDFKFPPKDGFVALSKAPDGHVV 267

Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity. Acts as a positive regulator of transcription. May be involved in 3'-end cleavage and polyadenylation of pre-mRNAs. Binds DNA and RNA.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus GN=DDX1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 35/193 (18%)

Query: 46  LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
           +NP D    F I  +GL      Q      W G RA  G+  GK+ +             
Sbjct: 93  MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATKGLTKGKHYY------------- 135

Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
           +     Q +CRVG S     +  LG  +  FGFGGTGK SH   F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSSMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194

Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
            +D++      + F+KNGK LG A +              +       A+FP  +LKN  
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFE--------------IPPHMKNQALFPACVLKNAE 237

Query: 226 VVMQFSVEQGLIP 238
           +   F  E+   P
Sbjct: 238 LKFNFGEEEFKFP 250

Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity. Possesses ATPase activity on various RNA, but not DNA polynucleotides. May play a role in RNA clearance at DNA double-strand breaks (DSBs), thereby facilitating the template-guided repair of transcriptionally active regions of the genome. Together with RELA, acts as a coactivator to enhance NF-kappa-B-mediated transcriptional activation. Acts as a positive transcriptional regulator of cyclin CCND2 expression. Binds to the cyclin CCND2 promoter region. Associates with chromatin at the NF-kappa-B promoter region via association with RELA. Binds to poly(A) RNA. May be involved in 3'-end cleavage and polyadenylation of pre-mRNAs.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
302144182	703	unnamed protein product [Vitis vinifera]	0.960	0.594	0.714	0.0
359495485	590	PREDICTED: heterogeneous nuclear ribonuc	0.960	0.708	0.714	0.0
147827160	1021	hypothetical protein VITISV_016567 [Viti	0.960	0.409	0.714	0.0
359495491	514	PREDICTED: heterogeneous nuclear ribonuc	0.960	0.813	0.714	0.0
302144178	1459	unnamed protein product [Vitis vinifera]	0.924	0.275	0.693	1e-173
449457692	595	PREDICTED: heterogeneous nuclear ribonuc	0.891	0.652	0.716	1e-171
449488411	595	PREDICTED: heterogeneous nuclear ribonuc	0.960	0.702	0.667	1e-170
356557660	517	PREDICTED: heterogeneous nuclear ribonuc	0.880	0.740	0.710	1e-163
90265186	717	H0410G08.12 [Oryza sativa Indica Group]	0.898	0.545	0.683	1e-162
222629633	717	hypothetical protein OsJ_16318 [Oryza sa	0.898	0.545	0.681	1e-160

>gi|302144182|emb|CBI23309.3| unnamed protein product [Vitis vinifera]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/427 (71%), Positives = 355/427 (83%), Gaps = 9/427 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 1   MASIKRQLSEPE--EPESKKPKAVLSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 51

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 52  GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 111

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 112 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 171

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG  GLGVVDS +++   ESA+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 172 KNGKWLGVAKEFDAGVKGLGVVDSPMRQLHWESALFPHVLLKNVMVQVQFSTEEGLVPEE 231

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 232 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 291

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 292 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 351

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPG 420
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKEVPADAVN M+ANYVLP +KD PG
Sbjct: 352 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKEVPADAVNEMIANYVLPRSKDMPG 411

Query: 421 SDELFDQ 427
           SDE FDQ
Sbjct: 412 SDEDFDQ 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495485|ref|XP_002271342.2| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Vitis vinifera]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/427 (71%), Positives = 355/427 (83%), Gaps = 9/427 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 148 MASIKRQLSEPE--EPESKKPKAALSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 198

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 199 GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 258

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 259 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 318

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG  GLGVVDS +++   ESA+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 319 KNGKWLGVAKEFDAGVKGLGVVDSPMRQLHWESALFPHVLLKNVMVQVQFSTEEGLVPEE 378

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 379 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 438

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 439 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 498

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPG 420
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKEVPADAVN M+ANYVLP +KD PG
Sbjct: 499 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKEVPADAVNEMIANYVLPGSKDMPG 558

Query: 421 SDELFDQ 427
           SDE FDQ
Sbjct: 559 SDEDFDQ 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147827160|emb|CAN66470.1| hypothetical protein VITISV_016567 [Vitis vinifera]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/427 (71%), Positives = 355/427 (83%), Gaps = 9/427 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 168 MASIKRQLSEPE--EPESKKPKAALSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 218

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 219 GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 278

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 279 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 338

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG  GLGVVDS +++   ESA+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 339 KNGKWLGVAKEFDAGVKGLGVVDSPMRQLHWESALFPHVLLKNVMVQVQFSTEEGLVPEE 398

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 399 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 458

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 459 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 518

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPG 420
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKEVPADAVN M+ANYVLP +KD PG
Sbjct: 519 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKEVPADAVNEMIANYVLPGSKDMPG 578

Query: 421 SDELFDQ 427
           SDE FDQ
Sbjct: 579 SDEDFDQ 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495491|ref|XP_003635003.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Vitis vinifera]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/427 (71%), Positives = 355/427 (83%), Gaps = 9/427 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 1   MASIKRQLSEPE--EPESKKPKAVLSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 51

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 52  GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 111

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 112 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 171

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG  GLGVVDS +++   ESA+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 172 KNGKWLGVAKEFDAGVKGLGVVDSPMRQLHWESALFPHVLLKNVMVQVQFSTEEGLVPEE 231

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 232 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 291

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 292 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 351

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPG 420
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKEVPADAVN M+ANYVLP +KD PG
Sbjct: 352 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKEVPADAVNEMIANYVLPRSKDMPG 411

Query: 421 SDELFDQ 427
           SDE FDQ
Sbjct: 412 SDEDFDQ 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144178|emb|CBI23305.3| unnamed protein product [Vitis vinifera]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/427 (69%), Positives = 343/427 (80%), Gaps = 25/427 (5%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 9   MASIKRQLSEPE--EPESKKPKAALSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 59

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 60  GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 119

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 120 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 179

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG                  A+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 180 KNGKWLGVAKEFDAGVK----------------ALFPHVLLKNVMVQVQFSTEEGLVPEE 223

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 224 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 283

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 284 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 343

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPG 420
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKEVPADAVN M+ANYVLP +KD PG
Sbjct: 344 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKEVPADAVNEMIANYVLPGSKDMPG 403

Query: 421 SDELFDQ 427
           SDE FDQ
Sbjct: 404 SDEDFDQ 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457692|ref|XP_004146582.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Cucumis sativus]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 278/388 (71%), Positives = 334/388 (86%)

Query: 40  QKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVST 99
           ++Q VVLNPADCDLDF+I+ +GL+ S L+++GFAYCWSGAR  VGI GGKYCFGCKI+S 
Sbjct: 31  KQQPVVLNPADCDLDFEIKSDGLQGSALYEKGFAYCWSGARTTVGITGGKYCFGCKIISL 90

Query: 100 QPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGV 159
           QPV+M DT PDQQH+CRVG SRGD PVG LGET QSFGFGGTGKFS+ G F ++GEKFG 
Sbjct: 91  QPVEMSDTAPDQQHLCRVGISRGDSPVGNLGETIQSFGFGGTGKFSNAGKFSDYGEKFGF 150

Query: 160 GDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHI 219
           GD+I+CA++LESKPLA+IGF+KNGKWLGT+ QFDAG  GLGVVDS +++ + ESA FPH+
Sbjct: 151 GDSIVCAVNLESKPLASIGFSKNGKWLGTSIQFDAGPRGLGVVDSPLRKCRWESAFFPHV 210

Query: 220 LLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGK 279
           LLKNV V +QFS+E+GL+P EG+K W  ALDD N++LGPTF N++DCEVMMMVGLPASGK
Sbjct: 211 LLKNVEVQLQFSIEEGLVPEEGFKPWACALDDNNALLGPTFNNVRDCEVMMMVGLPASGK 270

Query: 280 TTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR 339
           +TWA+KW  DHPEKR ILLGTNLIL+QMK+PGLLRKHNY ERF  LM +A  IF++LLSR
Sbjct: 271 STWAKKWADDHPEKRQILLGTNLILDQMKLPGLLRKHNYGERFDRLMDQATEIFNILLSR 330

Query: 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVP 399
           A+  PRN+IIDQTNV+K ARKRKL+ F +F+KIAVVVFPKPE+L+ RS +RF+EMGKEVP
Sbjct: 331 AAAVPRNYIIDQTNVYKHARKRKLKPFADFQKIAVVVFPKPEELQRRSAERFREMGKEVP 390

Query: 400 ADAVNNMLANYVLPVNKDTPGSDELFDQ 427
           ADAVN MLANY+LP +KD PGS E FD+
Sbjct: 391 ADAVNKMLANYILPTSKDIPGSGEYFDE 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488411|ref|XP_004158025.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Cucumis sativus]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/427 (66%), Positives = 348/427 (81%), Gaps = 9/427 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ +  L+  D +  E   K A+V D            ++Q V+LNPADCDLDF+I+ +
Sbjct: 1   MASKRHRLQEDDYEAKEP--KNARVSDAFE-------FKKQQPVMLNPADCDLDFEIKSD 51

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S L+++GFAYCWSGAR  VGI GGKYCFGCKI+S QPV+M DT PDQQH+CRVG S
Sbjct: 52  GLQGSALYEKGFAYCWSGARTTVGITGGKYCFGCKIISLQPVEMSDTAPDQQHLCRVGIS 111

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGD P+G LGET QSFGFGGTGKFS+ G F ++GEKFG GD+I+CA++LESKPLA+IGF+
Sbjct: 112 RGDSPLGNLGETIQSFGFGGTGKFSNAGKFSDYGEKFGFGDSIVCAVNLESKPLASIGFS 171

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLGT+ QFDAG  GLGVVDS +++ + ESA FPH+LLKNV V +QFS+E+GL+P E
Sbjct: 172 KNGKWLGTSIQFDAGPRGLGVVDSPLRKCRWESAFFPHVLLKNVEVQLQFSIEEGLVPEE 231

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           G+K W  ALDD N++LGPTF N++DCEVMMMVGLPASGK+TWA+KW  DHPEKR ILLGT
Sbjct: 232 GFKPWACALDDNNALLGPTFNNVRDCEVMMMVGLPASGKSTWAKKWADDHPEKRQILLGT 291

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NLIL+QMK+PGLLRKHNY ERF  LM +A  IF++LLSRA+  PRN+IIDQTNV+K ARK
Sbjct: 292 NLILDQMKLPGLLRKHNYGERFDRLMDQATEIFNILLSRAAAVPRNYIIDQTNVYKHARK 351

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPG 420
           RKL+ F +F+KIAVVVFPKPE+L+ RS +RF+EMGKEVPADAVN MLANY+LP +KD PG
Sbjct: 352 RKLKPFADFQKIAVVVFPKPEELQRRSAERFREMGKEVPADAVNKMLANYILPTSKDIPG 411

Query: 421 SDELFDQ 427
           S E FD+
Sbjct: 412 SGEYFDE 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557660|ref|XP_003547133.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Glycine max]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/387 (71%), Positives = 323/387 (83%), Gaps = 4/387 (1%)

Query: 43  RVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPV 102
           RV LNPADCDLDF I+ NG    GLH+EGFAYCWSGARANVGI  G+YCF CK+VS Q V
Sbjct: 37  RVFLNPADCDLDFHIDGNGHVGYGLHEEGFAYCWSGARANVGITRGRYCFACKVVSAQTV 96

Query: 103 DMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
           +M+DT P+QQH+CR+G SRGD+ VG LGE+ QSFG+GGTGKFS+ G FL+FG+KFGVGDT
Sbjct: 97  NMQDTAPEQQHICRLGISRGDNAVGNLGESRQSFGYGGTGKFSNCGRFLDFGDKFGVGDT 156

Query: 163 IICAIDL--ESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
           I+C +DL  ES+PLA+IGF+KNGKWLG A QFDA    LGVVDS     Q  SA+FPH+L
Sbjct: 157 IVCCVDLDLESRPLASIGFSKNGKWLGAATQFDAAR--LGVVDSPPGNLQWTSALFPHVL 214

Query: 221 LKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKT 280
           LKNVVV MQFSV+ GL+P +G+K W SA++DGN V+GP+F   +DCEV+MMVGLPASGKT
Sbjct: 215 LKNVVVQMQFSVKDGLVPEDGFKPWASAMEDGNIVMGPSFSEPRDCEVIMMVGLPASGKT 274

Query: 281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
           TWAEKWVKDHPEKRY+LLGTN IL+QMKVPGLLR++NY ERF  LM RA  IF++LLSRA
Sbjct: 275 TWAEKWVKDHPEKRYVLLGTNSILDQMKVPGLLRRNNYGERFDLLMDRATRIFNILLSRA 334

Query: 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPA 400
           +  PRN+IIDQTNV+KSARKRKL  F +++KIAVVVFPKP++LKIRS KRF EMGKEVP 
Sbjct: 335 ANIPRNYIIDQTNVYKSARKRKLEPFADYQKIAVVVFPKPDELKIRSDKRFTEMGKEVPP 394

Query: 401 DAVNNMLANYVLPVNKDTPGSDELFDQ 427
           DAVN M+ANYVLP +KD P SDE FDQ
Sbjct: 395 DAVNKMIANYVLPKSKDMPRSDEFFDQ 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265186|emb|CAH67657.1| H0410G08.12 [Oryza sativa Indica Group]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/392 (68%), Positives = 316/392 (80%), Gaps = 1/392 (0%)

Query: 37  PRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGG-KYCFGCK 95
           P  Q  RV LNPADCDLDFD+   GL+   LH  GFAYCWSGARA VG+ GG KYCFGCK
Sbjct: 28  PEPQPARVGLNPADCDLDFDVGGGGLRGEALHDGGFAYCWSGARATVGVRGGGKYCFGCK 87

Query: 96  IVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGE 155
           +V+ Q V+MEDT  DQQH+CRVG SRG DPVG LGET  SFGFGGTGKFSH G F+ +G 
Sbjct: 88  VVAEQAVEMEDTAADQQHLCRVGVSRGGDPVGALGETGHSFGFGGTGKFSHQGKFVEYGV 147

Query: 156 KFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAV 215
           KFGVGDT++CA+DL+SKPLA+IGF++NG+WLG AK FDA   GLG+V+S V   Q ESA+
Sbjct: 148 KFGVGDTVVCAVDLDSKPLASIGFSRNGEWLGIAKHFDASDKGLGLVESPVSSMQWESAI 207

Query: 216 FPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLP 275
           FPH+LLKNVVV MQFS E GL  V+GY+ W SA  DGN+V GP F   K+CE+MMMVGLP
Sbjct: 208 FPHVLLKNVVVEMQFSKEDGLQLVDGYEPWPSACVDGNAVSGPVFAEQKECEIMMMVGLP 267

Query: 276 ASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDV 335
           ASGK+TWAEKW+K+H EKR+ILLGTNL L QMKVPGLLRK+NY ERF+ LM RA  IF+ 
Sbjct: 268 ASGKSTWAEKWIKEHKEKRFILLGTNLALVQMKVPGLLRKNNYGERFERLMDRATMIFNT 327

Query: 336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMG 395
           LL+RA++ PRN+IIDQTNV+K+AR RKLR F N+RK AVVVFP P +LK+R+ KRFKEMG
Sbjct: 328 LLTRAAKIPRNYIIDQTNVYKNARSRKLRPFANYRKTAVVVFPSPSELKVRAAKRFKEMG 387

Query: 396 KEVPADAVNNMLANYVLPVNKDTPGSDELFDQ 427
           K+VPADAVN M AN+VLP++KD P S E FD+
Sbjct: 388 KDVPADAVNEMTANFVLPLSKDMPDSKEPFDE 419

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629633|gb|EEE61765.1| hypothetical protein OsJ_16318 [Oryza sativa Japonica Group]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/392 (68%), Positives = 315/392 (80%), Gaps = 1/392 (0%)

Query: 37  PRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGG-KYCFGCK 95
           P  Q  RV LNPADCDLDFD+   GL+   LH  GFAYCWSGARA VG+ GG KYCFGCK
Sbjct: 28  PEPQPARVGLNPADCDLDFDVGGGGLRGEALHDGGFAYCWSGARATVGVRGGGKYCFGCK 87

Query: 96  IVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGE 155
           +V+ Q V+MEDT  DQQH+CRVG SRG DPVG LGET  SFGFGGTGKFSH G F+ +G 
Sbjct: 88  VVAEQAVEMEDTAADQQHLCRVGVSRGGDPVGALGETGHSFGFGGTGKFSHQGKFVEYGV 147

Query: 156 KFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAV 215
           KFGVGDT++CA+DL+SKPLA+IGF++NG+WLG AK FDA   GLG+V+S V   Q ESA+
Sbjct: 148 KFGVGDTVVCAVDLDSKPLASIGFSRNGEWLGIAKHFDASDKGLGLVESPVSSMQWESAI 207

Query: 216 FPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLP 275
           FPH+LLKNVVV MQFS E GL  V+GY+ W SA  DGN+V GP F   K+CE+MMMVGLP
Sbjct: 208 FPHVLLKNVVVEMQFSKEDGLQLVDGYELWPSACVDGNAVSGPVFAEQKECEIMMMVGLP 267

Query: 276 ASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDV 335
           ASGK+TWAEK +K+H EKR+ILLGTNL L QMKVPGLLRK+NY ERF+ LM RA  IF+ 
Sbjct: 268 ASGKSTWAEKCIKEHKEKRFILLGTNLALVQMKVPGLLRKNNYGERFERLMDRATMIFNT 327

Query: 336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMG 395
           LL+RA++ PRN+IIDQTNV+K+AR RKLR F N+RK AVVVFP P +LK+R+ KRFKEMG
Sbjct: 328 LLTRAAKIPRNYIIDQTNVYKNARSRKLRPFANYRKTAVVVFPSPSELKVRAAKRFKEMG 387

Query: 396 KEVPADAVNNMLANYVLPVNKDTPGSDELFDQ 427
           K+VPADAVN M AN+VLP++KD P S E FD+
Sbjct: 388 KDVPADAVNEMTANFVLPLSKDMPDSKEPFDE 419

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
ZFIN|ZDB-GENE-040426-2432	784	hnrnpul1 "heterogeneous nuclea	0.811	0.450	0.409	2.1e-61
UNIPROTKB|J9JHA9	756	HNRNPUL1 "Uncharacterized prot	0.809	0.465	0.390	9.3e-59
UNIPROTKB|B7Z4B8	767	HNRNPUL1 "cDNA FLJ56481, highl	0.809	0.458	0.390	9.3e-59
UNIPROTKB|E2RNY1	856	HNRNPUL1 "Uncharacterized prot	0.809	0.411	0.390	1.1e-58
UNIPROTKB|Q9BUJ2	856	HNRNPUL1 "Heterogeneous nuclea	0.809	0.411	0.390	1.1e-58
UNIPROTKB|A4FUC2	858	HNRNPUL1 "Uncharacterized prot	0.809	0.410	0.390	1.1e-58
MGI|MGI:2443517	859	Hnrnpul1 "heterogeneous nuclea	0.809	0.409	0.393	1.1e-58
RGD|1307456	859	Hnrnpul1 "heterogeneous nuclea	0.809	0.409	0.390	2e-58
ZFIN|ZDB-GENE-030131-6422	796	hnrnpub "heterogeneous nuclear	0.820	0.448	0.344	1.4e-51
UNIPROTKB|F1Q3W0	783	HNRNPU "Uncharacterized protei	0.811	0.450	0.359	3.7e-51

ZFIN|ZDB-GENE-040426-2432 hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like 1" [Danio rerio (taxid:7955)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 153/374 (40%), Positives = 210/374 (56%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
             V ++  + DL F +  +      L  EGFAY WSGARA  G+N G+ C+  K+     V 
Sbjct:   201 VAIDTYNSDLHFKVSPDHCSGYPLTIEGFAYLWSGARATYGVNKGRVCYELKVKEYISVK 260

Query:   104 -MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDT 162
              +  + PD  HV RVG S  D    +LGE   S                ++GEKFG GD 
Sbjct:   261 HLPSSEPDP-HVVRVGWSL-DSCSTQLGEEAFSYGYGGTGKKSTNYKFGDYGEKFGEGDI 318

Query:   163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
             I C ID +S     + F+KNGKWL  A +               KE     A+FPH+L+K
Sbjct:   319 IGCYIDFDSHEQVEMAFSKNGKWLDVAFRVS-------------KEELAGQALFPHVLVK 365

Query:   223 NVVVVMQFSV-EQGLIPV-EGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPASGK 279
             N  V   F   E+   P+ +GY S++  +   N V G    + K DC+V+MMVGLPA GK
Sbjct:   366 NCAVEFNFGQREEPYFPLPDGY-SFIGDVSLENRVRGTVGPSSKSDCQVLMMVGLPACGK 424

Query:   280 TTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR 339
             TTWA K  + +P+KR+ +LGTN I+E+MKV GL R+ NY+ R+  L+ +A    + LL  
Sbjct:   425 TTWAAKHAEMNPDKRFNILGTNAIMEKMKVMGLRRQRNYAGRWDILIQQATQCLNRLLQI 484

Query:   340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVP 399
             AS   RN+I+DQTNV+ SA++RK+R F  F + AVV+ P+ EDLK R  K+ ++ GK+VP
Sbjct:   485 ASHKKRNYILDQTNVYGSAQRRKMRPFEGFHRKAVVICPRDEDLKERRCKQAED-GKDVP 543

Query:   400 ADAVNNMLANYVLP 413
               AV  M AN+VLP
Sbjct:   544 DQAVLEMKANFVLP 557

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|J9JHA9 HNRNPUL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 147/376 (39%), Positives = 206/376 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   111 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 168

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   169 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 226

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   227 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 273

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   274 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 332

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   333 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 392

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   393 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 452

Query:   398 VPADAVNNMLANYVLP 413
             VP  AV  M AN+ LP
Sbjct:   453 VPDHAVLEMKANFTLP 468

GO:0009615 "response to virus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|B7Z4B8 HNRNPUL1 "cDNA FLJ56481, highly similar to Heterogeneous nuclear ribonucleoprotein U-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 147/376 (39%), Positives = 206/376 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   122 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 179

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   180 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 237

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   238 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 284

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   285 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 343

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   344 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 403

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   404 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 463

Query:   398 VPADAVNNMLANYVLP 413
             VP  AV  M AN+ LP
Sbjct:   464 VPDHAVLEMKANFTLP 479

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E2RNY1 HNRNPUL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 603 (217.3 bits), Expect = 1.1e-58, P = 1.1e-58
 Identities = 147/376 (39%), Positives = 206/376 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   211 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 268

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   269 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 326

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   327 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 373

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   374 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 432

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   433 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 492

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   493 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 552

Query:   398 VPADAVNNMLANYVLP 413
             VP  AV  M AN+ LP
Sbjct:   553 VPDHAVLEMKANFTLP 568

GO:0019899 "enzyme binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9BUJ2 HNRNPUL1 "Heterogeneous nuclear ribonucleoprotein U-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 603 (217.3 bits), Expect = 1.1e-58, P = 1.1e-58
 Identities = 147/376 (39%), Positives = 206/376 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   211 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 268

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   269 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 326

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   327 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 373

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   374 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 432

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   433 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 492

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   493 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 552

Query:   398 VPADAVNNMLANYVLP 413
             VP  AV  M AN+ LP
Sbjct:   553 VPDHAVLEMKANFTLP 568

GO:0009615 "response to virus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006396 "RNA processing" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A4FUC2 HNRNPUL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 603 (217.3 bits), Expect = 1.1e-58, P = 1.1e-58
 Identities = 147/376 (39%), Positives = 206/376 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   212 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 269

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   270 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 327

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   328 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 374

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   375 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 433

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   434 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 493

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   494 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 553

Query:   398 VPADAVNNMLANYVLP 413
             VP  AV  M AN+ LP
Sbjct:   554 VPDHAVLEMKANFTLP 569

GO:0019899 "enzyme binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:2443517 Hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like 1" [Mus musculus (taxid:10090)]

 Score = 603 (217.3 bits), Expect = 1.1e-58, P = 1.1e-58
 Identities = 148/376 (39%), Positives = 206/376 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   212 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 269

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   270 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 327

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   328 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 374

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   375 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAA 433

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   434 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 493

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R+VKR  E GK+
Sbjct:   494 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTVKRTDEEGKD 553

Query:   398 VPADAVNNMLANYVLP 413
             VP  AV  M AN+ LP
Sbjct:   554 VPDHAVLEMKANFTLP 569

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1307456 Hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 601 (216.6 bits), Expect = 2.0e-58, P = 2.0e-58
 Identities = 147/376 (39%), Positives = 206/376 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   212 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 269

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   270 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 327

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   328 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 374

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   375 VKNCAVEFNFGQRAEPYCSILPGF-TFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAA 433

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   434 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 493

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   494 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 553

Query:   398 VPADAVNNMLANYVLP 413
             VP  AV  M AN+ LP
Sbjct:   554 VPDHAVLEMKANFTLP 569

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

ZFIN|ZDB-GENE-030131-6422 hnrnpub "heterogeneous nuclear ribonucleoprotein Ub" [Danio rerio (taxid:7955)]

 Score = 517 (187.1 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
 Identities = 130/377 (34%), Positives = 194/377 (51%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
             V L+P +CDL F +  N   +S L  E FA+ W+G RA+ G+N GK CF  K+    P+ 
Sbjct:   205 VCLDPYNCDLHFKVSRNRYSASSLTMESFAHLWAGGRASYGVNKGKVCFEMKVTEKTPIK 264

Query:   104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
               ++     H   +G S  +  +  LGE E S                ++GE F   D I
Sbjct:   265 HLNSKIMDFHDVHIGWSLANGCLS-LGEEEFSYSYSDKGKKASNCVTEDYGEGFDENDVI 323

Query:   164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
              C I+ E+  +  I F+KNG             N LGV     KE   + A+FPH+L  N
Sbjct:   324 GCFINFEADEVE-ISFSKNG-------------NDLGVAFKVNKESLADRALFPHVLCHN 369

Query:   224 VVVVMQFSV-EQGLIP-VEGYKSWVSALDDGNSVLGPTF-CNMKDCEVMMMVGLPASGKT 280
               V   F   E    P +E + +++  +     + GP      KDCEV++MVGLP SGKT
Sbjct:   370 CTVEFNFGQNETPFFPKLEDF-TFMQQIPLEERIRGPKGPVAKKDCEVIVMVGLPGSGKT 428

Query:   281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
             TW  K V+++P K Y +L TN +LE++ +  + R++    +   +  R       L+  A
Sbjct:   429 TWVVKHVEENPGK-YNILSTNTVLEKLMINSVKRQNKDITKLMAISQRVPFYLGKLIEIA 487

Query:   341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPA 400
             +R  R++I+DQTNV  +A++RK+ LF  F++ AVVVFP  E+LK R+ K+ +  GK++P 
Sbjct:   488 ARKKRHYILDQTNVSSAAQRRKMCLFAGFQRKAVVVFPTDENLKERAQKKAEADGKDIPE 547

Query:   401 DAVNNMLANYVLPVNKD 417
              A+  M A Y LP   D
Sbjct:   548 HALLKMKALYTLPEQGD 564

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1Q3W0 HNRNPU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 516 (186.7 bits), Expect = 3.7e-51, Sum P(2) = 3.7e-51
 Identities = 134/373 (35%), Positives = 192/373 (51%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
             V L+  +CDL F I  + L +S L  E FA+ W+G RA+ G++ GK CF  K+    PV 
Sbjct:   246 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 305

Query:   104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
                T     H  R+G S     +  LGE E S                ++GEKF   D I
Sbjct:   306 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 364

Query:   164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
              C  + ES  +  + +AKNG+ LG A +               KE      +FPH+L  N
Sbjct:   365 TCFANFESDEVE-LSYAKNGQDLGVAFKIS-------------KEILAGRPLFPHVLCHN 410

Query:   224 VVVVMQFSV-EQGLIPV-EGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKT 280
               V   F   E+   P+ E Y +++  +   + V GP      KDCEV+MM+GLP +GKT
Sbjct:   411 CAVEFNFGQKEKPYFPIPEDY-TFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKT 469

Query:   281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
             TW  K   ++P K Y +LGTN I+++M V G  ++   + +   L+ RA       +  A
Sbjct:   470 TWVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIA 528

Query:   341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPA 400
             +R  RNFI+DQTNV  +A++RK+ LF  F++ AVVV PK ED K R+ K+ +  GK++P 
Sbjct:   529 ARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPE 588

Query:   401 DAVNNMLANYVLP 413
              AV  M  N+ LP
Sbjct:   589 HAVLKMKGNFTLP 601

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009742001 SubName- Full=Chromosome undetermined scaffold_247, whole genome shotgun sequence; (489 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	435
cd12884	176	cd12884, SPRY_hnRNP, SPRY domain in heterogeneous	3e-67
cd12873	155	cd12873, SPRY_DDX1, SPRY domain associated with DE	9e-33
pfam13671	143	pfam13671, AAA_33, AAA domain	6e-27
cd11709	118	cd11709, SPRY, SPRY domain	5e-11
cd12872	149	cd12872, SPRY_Ash2, SPRY domain in Ash2	1e-10
pfam00622	125	pfam00622, SPRY, SPRY domain	1e-10
smart00449	122	smart00449, SPRY, Domain in SPla and the RYanodine	2e-08
cd12885	132	cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi	3e-08
cd12876	187	cd12876, SPRY_SOCS3, SPRY domain in the suppressor	7e-08
TIGR03574	249	TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, a	4e-07
COG4639	168	COG4639, COG4639, Predicted kinase [General functi	2e-06
cd12875	171	cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and	4e-06
cd12886	128	cd12886, SPRY_like, SPRY domain-like in bacteria	1e-04
cd12907	175	cd12907, SPRY_Fbox, SPRY domain in the F-box famil	2e-04
cd12909	153	cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin	3e-04
cd12906	174	cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppre	8e-04
cd12882	128	cd12882, SPRY_RNF123, SPRY domain at N-terminus of	0.001
pfam06414	191	pfam06414, Zeta_toxin, Zeta toxin	0.002
cd12878	133	cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryano	0.004

>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1

 Score =  211 bits (540), Expect = 3e-67
 Identities = 80/188 (42%), Positives = 100/188 (53%), Gaps = 16/188 (8%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           VVL+  + DL   I  +GL +  L  EGFAY W+GARA  G+  GK CF  K++   PV 
Sbjct: 1   VVLDWYNSDLHLKISKDGLSAEPLTDEGFAYLWAGARATYGVRKGKVCFEVKVLENLPVK 60

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T     HV RVG S     + +LGE + S+G+G TGK S  G F ++GE FG GD I
Sbjct: 61  HLPTEETDPHVVRVGWSVDSSSL-QLGEEKLSYGYGSTGKKSTNGKFEDYGEPFGEGDVI 119

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C +DLES+P   I F KNGK LG A + D    G               A+FPHIL KN
Sbjct: 120 GCYLDLESEP-VEISFTKNGKDLGVAFRIDKELEG--------------KALFPHILTKN 164

Query: 224 VVVVMQFS 231
             V + F 
Sbjct: 165 CAVEVNFG 172

This domain, consisting of the distinct N-terminal PRY subdomain followed by the SPRY subdomain, is found at the C-terminus of heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1 (also known as HNRPUL1 ) which is a major constituent of nuclear matrix or scaffold and binds directly to DNA sequences through the N-terminal acidic region named serum amyloid P (SAP). Its function is specifically modulated by E1B-55kDa in adenovirus-infected cells. HNRPUL1 also participates in ATR protein kinase signaling pathways during adenovirus infection. Two transcript variants encoding different isoforms have been found for this gene. When associated with bromodomain-containing protein 7 (BRD7), it activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Length = 176

>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1

 Score =  120 bits (304), Expect = 9e-33
 Identities = 62/188 (32%), Positives = 80/188 (42%), Gaps = 40/188 (21%)

Query: 46  LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGING-GKYCFGCKIVSTQPVDM 104
           ++P D D    I  +GL      Q      W G RA  G+ G GKY +   +        
Sbjct: 1   MSPYDRDAALAISPDGLLC----QSREEKGWQGCRATKGVKGKGKYYYEVTVTD------ 50

Query: 105 EDTPPDQQHVCRVG--TSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
                  + +CRVG  T         LG  +  FG+GGTGK SHG  F ++GE FG GD 
Sbjct: 51  -------EGLCRVGWSTEDASL---DLGTDKFGFGYGGTGKKSHGRQFEDYGEPFGKGDV 100

Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
           I C +DL++    TI F+KNGK LG A                        A+FP + LK
Sbjct: 101 IGCLLDLDN---GTISFSKNGKDLGVAFDIPPKLRN--------------QALFPAVCLK 143

Query: 223 NVVVVMQF 230
           N  V   F
Sbjct: 144 NAEVEFNF 151

This SPRY domain is associated with the DEAD box gene, DDX1, an RNA-dependent ATPase involved in HIV-1 Rev function and virus replication. It is suggested that DDX1 acts as a cellular cofactor by promoting oligomerization of Rev on the Rev response element (RRE). DDX1 RNA is overexpressed in breast cancer, data showing a strong and independent association between poor prognosis and deregulation of the DEAD box protein DDX1, thus potentially serving as an effective prognostic biomarker for early recurrence in primary breast cancer. DDX1 also interacts with RelA and enhances nuclear factor kappaB-mediated transcription. DEAD-box proteins are associated with all levels of RNA metabolism and function, and have been implicated in translation initiation, transcription, RNA splicing, ribosome assembly, RNA transport, and RNA decay. Length = 155

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score =  104 bits (262), Expect = 6e-27
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG 327
           +++MVGLP SGK+T+A + ++   E   ++L ++ + ++++  G      Y+     +  
Sbjct: 1   LILMVGLPGSGKSTFARRLLR---ELGAVVLSSDTLRKRLRGDGPPDISYYARASGRVYQ 57

Query: 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV--NFRKIAVVVFPKPEDLKI 385
           R   +    L       R  I+D TN+ +  R R + L          V +    E L+ 
Sbjct: 58  RLLELAREALRA----GRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRE 113

Query: 386 RSVKRFKEMG--KEVPADAVNNMLANYVLP 413
           R+ +R +  G   +VP   ++ MLA +  P
Sbjct: 114 RNAQRERSGGDPSDVPEAVLDRMLARFEPP 143

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|240451 cd11709, SPRY, SPRY domain

 Score = 59.4 bits (144), Expect = 5e-11
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 18/115 (15%)

Query: 88  GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD---DPVGKLGETEQSFGFGGTGKF 144
           GK+ +  ++ S     +           +VG +      D    +G+ E S+GF G+   
Sbjct: 1   GKWYYEVRVDSGNGGLI-----------QVGWATKSFSLDGERGVGDDEGSWGFDGSRLR 49

Query: 145 S-HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNG 198
             HGG+    G  +  GD + C +DL++    T+ F+ NG  LG A +      G
Sbjct: 50  KGHGGSSEPGGRPWKSGDVVGCLLDLDAG---TLSFSLNGVDLGVAFENLFRKGG 101

SPRY domains, first identified in the SP1A kinase of Dictyostelium and rabbit Ryanodine receptor (hence the name), are homologous to B30.2. SPRY domains have been identified in at least 11 protein families, covering a wide range of functions, including regulation of cytokine signaling (SOCS), RNA metabolism (DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha), intracellular calcium release (ryanodine receptors or RyR) and regulatory and developmental processes (HERC1 and Ash2L). B30.2 also contains residues in the N-terminus that form a distinct PRY domain structure; i.e. B30.2 domain consists of PRY and SPRY subdomains. B30.2 domains comprise the C-terminus of three protein families: BTNs (receptor glycoproteins of immunoglobulin superfamily); several TRIM proteins (composed of RING/B-box/coiled-coil or RBCC core); Stonutoxin (secreted poisonous protein of the stonefish Synanceia horrida). While SPRY domains are evolutionarily ancient, B30.2 domains are a more recent adaptation where the SPRY/PRY combination is a possible component of immune defense. Mutations found in the SPRY-containing proteins have shown to cause Mediterranean fever and Opitz syndrome. Length = 118

>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 38/120 (31%), Positives = 48/120 (40%), Gaps = 23/120 (19%)

Query: 76  WSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRG----DDPVGKLGE 131
           +  ARAN G+  GK+ F  KI+             +    RVG SR       PVG    
Sbjct: 16  YRMARANHGVREGKWYFEVKILE---------GGGETGHVRVGWSRREASLQAPVGY--- 63

Query: 132 TEQSFGFGG-TGKFSHGGNFLNFGEK-FGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
            + S+ +    G+  H      +GE  F  GD I C I L       I F KNGK  G A
Sbjct: 64  DKYSYAYRDKDGEKFHLSRGKPYGEPGFKEGDVIGCLITLPK-----IEFFKNGKSQGVA 118

This SPRY domain is found at the C-terminus of Ash2 (absent, small, or homeotic discs 2) -like proteins, core components of all mixed-lineage leukemia (MLL) family histone methyltransferases. Ash2 is a member of the trithorax group of transcriptional regulators of the Hox genes. Recent studies show that the SPRY domain of Ash2 mediates the interaction with RbBP5 and has an important role in regulating the methyltransferase activity of MLL complexes. In yeast, Ash2 is involved in histone methylation and is required for the earliest stages of embryogenesis. Length = 149

>gnl|CDD|216029 pfam00622, SPRY, SPRY domain

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 33/147 (22%)

Query: 88  GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVG--TSRGDDPVGKL-GETEQSFGFGGTGKF 144
           GK+ F         V+++          RVG  T     P  +L G+ E S+G+ G+G  
Sbjct: 2   GKHYFE--------VEVDTGGGGH---VRVGWATKSVKKPGFRLLGDDEGSWGYDGSGGS 50

Query: 145 S-HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVD 203
             H G    +G KF  GD I C +DLE      I F KNGK LG     +    G     
Sbjct: 51  KYHNGESEPYGLKFQEGDVIGCFLDLEEG---EISFTKNGKDLGGYTFRNVEFGG----- 102

Query: 204 SAVKERQCESAVFPHILLKNVVVVMQF 230
                      ++P + L +    +QF
Sbjct: 103 ----------PLYPAVSLGSTGEAVQF 119

SPRY Domain is named from SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. Length = 125

>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 38/141 (26%), Positives = 53/141 (37%), Gaps = 36/141 (25%)

Query: 88  GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGK---LGETEQSFGFGGT-GK 143
           G++ F  +I                   RVG +    P G    LGE + S+G+ G  GK
Sbjct: 2   GRHYFEVEIGDG-------------GHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGK 48

Query: 144 FSHGGNFLNFGEKFGV-GDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVV 202
             H      +G      GD I C +DLE+    TI F KNGK+L             G+ 
Sbjct: 49  KYHNSTGPEYGLPLQEPGDVIGCFLDLEAG---TISFYKNGKYLH------------GLA 93

Query: 203 DSAVKERQCESAVFPHILLKN 223
              VK       ++P   L +
Sbjct: 94  FFDVK---FSGPLYPAFSLGS 111

Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. Length = 122

>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 110 DQQHVCRVG-TSRGDDPVGKLGETEQSFGF-GGTGKFSHGGNFL-NFGEKFGVGDTIICA 166
            ++ +  +G  + G       G  + S+G+ G  G+   GG    N+G  FG GD + C 
Sbjct: 26  GEKGIVSIGFCTSGFPLNRMPGWEDGSYGYHGDDGRVYLGGGEGENYGPPFGTGDVVGCG 85

Query: 167 IDLESKPLATIGFAKNGKWLGTAKQF 192
           I+ ++     I F KNG+ LGTA + 
Sbjct: 86  INFKTG---EIFFTKNGELLGTAFEN 108

This family includes SPRY domains found in Ran binding proteins (RBP or RanBPM) 9 and 10, SSH4 (suppressor of SHR3 null mutation protein 4), SPRY domain-containing protein 3 (SPRYD3) as well as HECT, a C-terminal catalytic domain of a subclass of ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as androgen receptor (AR) coactivators. Both consist of the N-terminal proline- and glutamine-rich regions, the SPRY domain, and LisH-CTLH and CRA motifs. The SPRY domain in SSH4 may be involved in cargo recognition, either directly or by combination with other adaptors, possibly leading to a higher selectivity. SPRYD3 is highly expressed in most tissues in humans, possibly involved in important cellular processes. HECT E3 mediates the direct transfer of ubiquitin from E2 to substrate. Length = 132

>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine signaling 3 (SOCS3) family

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTII-CAIDLESKPLATIGFAKNGKWLG 187
           LG  E+S+G    G   H G    + EKFG   TII   +D+ S    T+ F KNGK LG
Sbjct: 84  LGLDEESWGLSYKGLLWHNGESRPYTEKFGNQGTIIGVHLDMWS---GTLTFYKNGKPLG 140

Query: 188 TA 189
            A
Sbjct: 141 VA 142

The SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. All four SPSB proteins interact with c-Met, the hepatocyte growth factor receptor, but SOCS3 regulates cellular response to a variety of cytokines such as leukemia inhibitory factor (LIF) and interleukin 6. SOCS3, along with SOCS1, are expressed by immune cells and cells of the central nervous system (CNS) and have the potential to impact immune processes within the CNS. In non-small cell lung cancer (NSCLC), SOCS3 is silenced and proline-rich tyrosine kinase 2 (Pyk2) is over-expressed; it has been suggested that SOCS3 could be an effective way to prevent the progression of NSCLC due to its role in regulating Pyk2 expression. Length = 187

>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 23/162 (14%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCL 325
           ++++ GLP  GK+T++++  K   EK    I+LGT+LI E   V        + E+++  
Sbjct: 1   LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV--------WKEKYEEF 52

Query: 326 MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLK 384
                     L+  A +   + I+D TN + S R+  + +   + K  ++++ K P D  
Sbjct: 53  ---IRDSTLYLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTL 109

Query: 385 IRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFD 426
           +R   R  E G+++P + + +M   +      D PG+   +D
Sbjct: 110 LR---RNIERGEKIPNEVIKDMYEKF------DEPGTKYSWD 142

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity [Protein synthesis, tRNA aminoacylation]. Length = 249

>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction only]

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 21/144 (14%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG 327
           ++++ G   SGK+T+A++    +            +L    +  LL      E  Q    
Sbjct: 4   LVVLRGASGSGKSTFAKENFLQNY-----------VLSLDDLRLLLGVSASKENSQ---K 49

Query: 328 RANAIFDVLLSRASRTPRN---FIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDL 383
               ++D+L  +  +  R     IID TN+ +  R++ + L   +  KI  +VF  P +L
Sbjct: 50  NDELVWDILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLEL 109

Query: 384 KIRSVKRFKEMGKEVPADAVNNML 407
               + R K   ++VP + +  ML
Sbjct: 110 ---CLARNKLRERQVPEEVIPRML 130

Length = 168

>gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of cytokine signaling (SOCS) proteins

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 30/157 (19%)

Query: 47  NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
           NPADC  +  I+++GL     H+   A      R  +G + G + +  K    Q      
Sbjct: 4   NPADCSKNIYIKEDGLT---FHRRPVAQSTDAIRGKIGYSRGLHAWEVKWEGRQ------ 54

Query: 107 TPPDQQHVCRVGTSRGDDPVGK------LGETEQSFGFG-GTGKFSHGGNFL-------N 152
               +     VG +  D P+        LG   +S+G+   T K  H G  +       +
Sbjct: 55  ----RGSHAVVGVATKDAPLQCDGYVALLGSDSESWGWDLSTNKLYHDGKVVIGSYPAGS 110

Query: 153 FGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
             E + V D ++  +D+E     T+ F  NG++LG A
Sbjct: 111 ATENYSVPDRVLVILDMEDG---TLAFEANGEYLGVA 144

This family consists of the SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) as well as F-box protein 45 (Fbxo45), a novel synaptic E3 and ubiquitin ligase. The SPSB protein is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. SPSB1, SPSB2, and SPSB4 interact with prostate apoptosis response protein 4 (Par-4) and are negative regulators that recruit the ECS E3 ubiquitin ligase complex to polyubiquitinate inducible nitric-oxide synthase (iNOS), resulting in its proteasomal degradation. Fbxo45 is related to this family; it is located N-terminal to the SPRY domain, and known to induce the degradation of a synaptic vesicle-priming factor, Munc13-1, via the SPRY domain, thus playing an important role in the regulation of neurotransmission by modulating Munc13-1 at the synapse. Suppressor of cytokine signaling (SOCS) proteins negatively regulate signaling from JAK-associated cytokine receptor complexes, and play key roles in the regulation of immune homeostasis. Length = 171

>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 117 VGTSRGDDPVGK-LGETEQSFGFGGT----GKFSHGGNFLNFGEKFGVGDTIICAIDLES 171
           +G +     +   LG    S+G+         +S G    +FG  F  GD I  A+DL++
Sbjct: 20  IGVAPAAVTLNNGLGIELSSYGYSLGVSSGNTYSGGSTVASFGAGFTAGDVIGVALDLDA 79

Query: 172 KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDS 204
                I F KNG W G+      G+N       
Sbjct: 80  G---KIWFYKNGVWQGSG-SPAPGTNPAFAGTQ 108

This family contains SPRY-like domains that are found only in bacterial and are mostly uncharacterized. SPRY domains, first identified in the SP1A kinase of Dictyostelium and rabbit Ryanodine receptor (hence the name), are homologous to B30.2. SPRY domains have been identified in at least 11 eukaryotic protein families, covering a wide range of functions, including regulation of cytokine signaling (SOCS), RNA metabolism (DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha), intracellular calcium release (ryanodine receptors or RyR) and regulatory and developmental processes (HERC1 and Ash2L). Length = 128

>gnl|CDD|240487 cd12907, SPRY_Fbox, SPRY domain in the F-box family Fbxo45

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 30/156 (19%)

Query: 47  NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
           NP DC  +  I+ NG     LH+   A    GAR  +G + G++ +  ++    P+    
Sbjct: 4   NPNDCSRNVYIKPNGFT---LHRNPVAQSTDGARGKIGFSSGRHAW--EVWWEGPLGT-- 56

Query: 107 TPPDQQHVCRVGTSRGDDP------VGKLGETEQSFGFGGT-GKFSHGG----NF--LNF 153
                  V  VG +  + P      V  LG  +QS+G+        H G    N+   N 
Sbjct: 57  -------VAVVGIATKEAPLQCHGYVALLGSDDQSWGWNLVDNHLLHNGDVQGNYPQCNN 109

Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
             K+ VG+ I   +D+E   LA   F +  ++LG A
Sbjct: 110 APKYQVGERIRVILDMEDNTLA---FERGYEFLGVA 142

Fbxo45 is a novel synaptic E3 and ubiquitin ligase, related to the suppressor of cytokine signaling (SOCS) proteins and located N-terminal to a SPRY (SPla and the ryanodine receptor) domain. Fbxo45 induces the degradation of a synaptic vesicle-priming factor, Munc13-1, via the SPRY domain, thus playing an important role in the regulation of neurotransmission by modulating Munc13-1 at the synapse. F-box motifs are found in proteins that function as the substrate recognition component of SCF E3 complexes. Length = 175

>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 117 VGTSRGDDPVGKL-GETEQSFGF-GGTGKFSHG-GNFLNFGEKFGVGDTIICAIDLESKP 173
           +G S     + +L G  + S+G+ G  G      G    +G  F  GD I C I+     
Sbjct: 53  IGLSTKGVNLNRLPGWEKHSWGYHGDDGHSFSSSGTGKPYGPTFTTGDVIGCGINFVDN- 111

Query: 174 LATIGFAKNGKWLGTA 189
             TI + KNG  LGTA
Sbjct: 112 --TIFYTKNGVNLGTA 125

This family includes SPRY domain in Ran binding protein (RBP or RanBPM) 9 and 10, and similar proteins. RanBP9 (also known as RanBPM), a binding partner of Ran, is a small Ras-like GTPase that exerts multiple functions via interactions with various proteins. RanBP9 and RanBP10 also act as androgen receptor (AR) coactivators. Both consist of the N-terminal proline- and glutamine-rich regions, the SPRY domain, and LisH-CTLH and CRA motifs. SPRY domain of RanBPM forms a complex with CD39, a prototypic member of the NTPDase family, thus down-regulating activity substantially. RanBP10 enhances the transcriptional activity of AR in a ligand-dependent manner and exhibits a protein expression pattern different from RanBPM in various cell lines. RanBP10 is highly expressed in AR-positive prostate cancer LNCaP cells, while RanBPM is abundant in WI-38 and MCF-7 cells. Length = 153

>gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4)

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 33/160 (20%)

Query: 47  NPADCDLDFDI-EDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
           NP D  L+  + ED+ L     H+   A    G R  VG + G + +  +I    P    
Sbjct: 4   NPEDRSLNIFVKEDDPLT---FHRHPVAQSTDGIRGKVGYSRGLHVW--EI--NWPTRQR 56

Query: 106 DTPPDQQHVCRVGTSRGDDPV------GKLGETEQSFGFG-GTGKFSHGGN--------- 149
            T     H   VG +  + P+        +G  E+S+G+  G  K  H            
Sbjct: 57  GT-----HAV-VGVATAEAPLHCVGYQSLVGSNEESWGWDLGRNKLYHDSKNNPGVTYPA 110

Query: 150 FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
           FL   E F V D  +  +D++     T+ F  +G++LG A
Sbjct: 111 FLKPDENFVVPDKFLVVLDMDE---GTLSFVVDGQYLGVA 147

The SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. All four SPSB proteins interact with c-Met, the hepatocyte growth factor receptor, but only SPSB1, SPSB2, and SPSB4 interact with prostate apoptosis response protein 4 (Par-4). They are negative regulators that recruit the ECS E3 ubiquitin ligase complex to polyubiquitinate inducible nitric-oxide synthase (iNOS), resulting in its proteasomal degradation, thus contributing to protection against the cytotoxic effect of iNOS in activated macrophages. It has been shown that SPSB1 and SPSB4 induce the degradation of iNOS more strongly than SPSB2. The Drosophila melanogaster SPSB1 homolog, GUSTAVUS, interacts with the DEAD box RNA helicase Vasa. Suppressor of cytokine signaling (SOCS) proteins negatively regulate signaling from JAK-associated cytokine receptor complexes, and play key roles in the regulation of immune homeostasis. Length = 174

>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger protein 123

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 25/127 (19%)

Query: 79  ARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQ-----HVCRVGTSRGDDPVGKLGETE 133
            RAN  +  GK+ +   +  T+ +         Q       CR     G      +G+T 
Sbjct: 2   IRANACVYKGKWMYEVTL-GTKGI--------MQIGWATISCRFTQEEG------VGDTP 46

Query: 134 QSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFD 193
            S+ + G        +   +GE +  GD I C IDL+     TI F +NG+ LG A  FD
Sbjct: 47  DSYAYDGNRVRKWNVSTQKYGEPWVAGDVIGCCIDLDEG---TISFYRNGRSLGVA--FD 101

Query: 194 AGSNGLG 200
               G G
Sbjct: 102 NVRRGPG 108

This SPRY domain is found at the N-terminus of RING finger protein 123 domain (also known as E3 ubiquitin-protein ligase RNF123). The ring finger domain motif is present in a variety of functionally distinct proteins and known to be involved in protein-protein and protein-DNA interactions. RNF123 displays E3 ubiquitin ligase activity toward the cyclin-dependent kinase inhibitor p27 (Kip1). Length = 128

>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 21/154 (13%)

Query: 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM-KVPGLLRKHN--YSERFQCLMG 327
           + G P +GKT  A   +++      + +  + +         L +      SE  Q    
Sbjct: 17  LGGQPGAGKTELARALLEELGGGNVVRIDPDELRTYHPDYDELQKADPKDASELTQPDAS 76

Query: 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARK-----RKLRLFVNFRKIAVVVFPKPED 382
           R     + L+  A     N I++ T   +S        RKL+    +     VV   PE 
Sbjct: 77  R---WVEKLIDYAIERGYNIILEGT--LRSPDVARKLARKLKA-AGYEVEVYVVAVPPEL 130

Query: 383 LKIRSVKRFKEMG-------KEVPADAVNNMLAN 409
             +  + R++E         KEV   A N +  +
Sbjct: 131 SWLGVLDRYEEELAAGRRVPKEVHDAAYNGLPES 164

This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid. Length = 191

>gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 116 RVGTSRGDDPVGK-LGETEQSFGFGG--TGKFSHGGNFLNFGEKFGVGDTIICAIDLESK 172
           RVG +R        LG  + S+ F G    K+  G     FG+++  GD + C +DL  +
Sbjct: 29  RVGWARPGFRPDLELGSDDLSYAFDGFLARKWHQGSES--FGKQWQPGDVVGCMLDLVDR 86

Query: 173 PLATIGFAKNGKWL 186
              TI F  NG+ L
Sbjct: 87  ---TISFTLNGELL 97

This SPRY domain (SPRY2) is the second of three structural repeats in all three isoforms of the ryanodine receptor (RyR), which are the major Ca2+ release channels in the membranes of sarcoplasmic reticulum (SR). There are three RyR genes in mammals; the skeletal RyR1, the cardiac RyR2 and the brain RyR3. The three SPRY domains are located in the N-terminal part of the cytoplasmic region of the RyRs, The SPRY2 domain has been shown to bind to the dihydropryidine receptor (DHPR) II-III loop and the ASI region of RyR1. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	435
KOG0349	725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	100.0
KOG2626	544	consensus Histone H3 (Lys4) methyltransferase comp	99.96
PF00622	124	SPRY: SPRY domain; InterPro: IPR003877 The SPRY do	99.86
smart00449	122	SPRY Domain in SPla and the RYanodine Receptor. Do	99.86
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.85
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.82
KOG2242	558	consensus Scaffold/matrix specific factor hnRNP-U/	99.8
COG4639	168	Predicted kinase [General function prediction only	99.78
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.75
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.75
KOG4030	197	consensus Uncharacterized conserved protein, conta	99.72
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.7
PHA02530	300	pseT polynucleotide kinase; Provisional	99.69
KOG2243	5019	consensus Ca2+ release channel (ryanodine receptor	99.69
KOG3953	242	consensus SOCS box protein SSB-1, contains SPRY do	99.67
COG0645	170	Predicted kinase [General function prediction only	99.66
PRK06762	166	hypothetical protein; Provisional	99.61
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.59
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.52
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.48
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.44
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.43
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.42
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.37
KOG3062	281	consensus RNA polymerase II elongator associated p	99.32
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.3
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.3
KOG2243	5019	consensus Ca2+ release channel (ryanodine receptor	99.23
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.2
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.2
KOG4367	699	consensus Predicted Zn-finger protein [Function un	99.19
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.19
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	99.15
PRK14527	191	adenylate kinase; Provisional	99.12
PRK11545	163	gntK gluconate kinase 1; Provisional	99.1
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.09
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.08
PRK14531	183	adenylate kinase; Provisional	99.07
PRK09825	176	idnK D-gluconate kinase; Provisional	99.06
PRK14532	188	adenylate kinase; Provisional	99.05
PRK00889	175	adenylylsulfate kinase; Provisional	99.03
PRK12337	475	2-phosphoglycerate kinase; Provisional	99.01
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.98
PLN02200	234	adenylate kinase family protein	98.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.97
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.96
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.95
KOG4622	291	consensus Predicted nucleotide kinase [General fun	98.94
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.93
PRK05541	176	adenylylsulfate kinase; Provisional	98.91
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.91
PRK01184	184	hypothetical protein; Provisional	98.87
PRK12338	319	hypothetical protein; Provisional	98.85
PRK03846	198	adenylylsulfate kinase; Provisional	98.81
PRK00279	215	adk adenylate kinase; Reviewed	98.8
KOG1477	469	consensus SPRY domain-containing proteins [General	98.78
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	98.77
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.76
PRK14530	215	adenylate kinase; Provisional	98.74
PRK02496	184	adk adenylate kinase; Provisional	98.7
PRK00625	173	shikimate kinase; Provisional	98.69
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.68
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.68
PRK13946	184	shikimate kinase; Provisional	98.67
PRK14737	186	gmk guanylate kinase; Provisional	98.67
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.65
PRK00131	175	aroK shikimate kinase; Reviewed	98.62
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.61
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.61
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	98.61
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.59
PLN02674	244	adenylate kinase	98.57
PRK14528	186	adenylate kinase; Provisional	98.56
PRK07261	171	topology modulation protein; Provisional	98.53
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.53
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.53
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.52
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.52
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.5
PRK03839	180	putative kinase; Provisional	98.49
PRK13808	333	adenylate kinase; Provisional	98.47
PRK06217	183	hypothetical protein; Validated	98.47
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.47
PRK04040	188	adenylate kinase; Provisional	98.46
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.45
PRK14738	206	gmk guanylate kinase; Provisional	98.45
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.44
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.44
PRK14529	223	adenylate kinase; Provisional	98.43
PRK13947	171	shikimate kinase; Provisional	98.42
PRK13948	182	shikimate kinase; Provisional	98.41
PRK08118	167	topology modulation protein; Reviewed	98.39
PTZ00088	229	adenylate kinase 1; Provisional	98.39
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.39
PRK04182	180	cytidylate kinase; Provisional	98.39
PRK13949	169	shikimate kinase; Provisional	98.37
PRK06547	172	hypothetical protein; Provisional	98.36
PRK05057	172	aroK shikimate kinase I; Reviewed	98.33
PRK00300	205	gmk guanylate kinase; Provisional	98.32
PRK14526	211	adenylate kinase; Provisional	98.3
PLN02459	261	probable adenylate kinase	98.29
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.27
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.27
PRK06696	223	uridine kinase; Validated	98.26
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.26
PRK08356	195	hypothetical protein; Provisional	98.25
PRK13973	213	thymidylate kinase; Provisional	98.23
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.18
PRK00698	205	tmk thymidylate kinase; Validated	98.18
PRK08233	182	hypothetical protein; Provisional	98.17
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.17
PRK03731	171	aroL shikimate kinase II; Reviewed	98.16
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.14
PLN02772	398	guanylate kinase	98.13
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.13
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.12
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.1
PTZ00301	210	uridine kinase; Provisional	98.08
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.08
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	98.06
PRK05480	209	uridine/cytidine kinase; Provisional	98.06
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.05
PRK06761	282	hypothetical protein; Provisional	98.03
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.03
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.02
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.02
PRK14734	200	coaE dephospho-CoA kinase; Provisional	97.99
PLN02422	232	dephospho-CoA kinase	97.99
PRK13975	196	thymidylate kinase; Provisional	97.97
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.94
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.94
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.91
PLN02199	303	shikimate kinase	97.87
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.86
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.85
PLN02924	220	thymidylate kinase	97.83
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.8
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.79
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.79
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.78
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.75
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.74
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.72
PTZ00451	244	dephospho-CoA kinase; Provisional	97.72
PLN02842	505	nucleotide kinase	97.67
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.65
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.62
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.62
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.62
PLN02165	334	adenylate isopentenyltransferase	97.62
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.61
PRK07667	193	uridine kinase; Provisional	97.6
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.59
COG3709	192	Uncharacterized component of phosphonate metabolis	97.58
PRK13974	212	thymidylate kinase; Provisional	97.53
PF00004	132	AAA: ATPase family associated with various cellula	97.51
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	97.51
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	97.5
PLN02318	656	phosphoribulokinase/uridine kinase	97.48
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.47
PLN02348	395	phosphoribulokinase	97.42
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.4
PRK05439	311	pantothenate kinase; Provisional	97.4
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.38
PRK09087	226	hypothetical protein; Validated	97.37
PRK13976	209	thymidylate kinase; Provisional	97.31
PRK07933	213	thymidylate kinase; Validated	97.31
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.3
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.25
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.25
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.25
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	97.22
PRK08084	235	DNA replication initiation factor; Provisional	97.2
PRK07429	327	phosphoribulokinase; Provisional	97.19
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.15
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.13
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.08
PHA00729	226	NTP-binding motif containing protein	97.05
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.04
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.03
PRK06893	229	DNA replication initiation factor; Validated	97.02
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	97.02
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	97.01
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.99
TIGR00959	428	ffh signal recognition particle protein. This mode	96.99
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	96.98
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.98
PRK10867	433	signal recognition particle protein; Provisional	96.95
PRK00023	225	cmk cytidylate kinase; Provisional	96.93
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.92
KOG1477	469	consensus SPRY domain-containing proteins [General	96.9
smart00382	148	AAA ATPases associated with a variety of cellular	96.9
PHA03132	580	thymidine kinase; Provisional	96.9
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.88
PRK06620	214	hypothetical protein; Validated	96.87
PRK05642	234	DNA replication initiation factor; Validated	96.86
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.85
PRK00149	450	dnaA chromosomal replication initiation protein; R	96.83
PRK14974	336	cell division protein FtsY; Provisional	96.81
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.8
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.8
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.79
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.78
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.73
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	96.69
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.68
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.67
PRK10416	318	signal recognition particle-docking protein FtsY;	96.65
PLN03025	319	replication factor C subunit; Provisional	96.63
PF13245	76	AAA_19: Part of AAA domain	96.62
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.6
PRK08727	233	hypothetical protein; Validated	96.58
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.58
CHL00181	287	cbbX CbbX; Provisional	96.57
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.56
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.55
PF13173	128	AAA_14: AAA domain	96.53
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.53
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.51
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	96.51
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.5
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.47
cd03246	173	ABCC_Protease_Secretion This family represents the	96.47
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	96.41
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.38
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.36
KOG3308	225	consensus Uncharacterized protein of the uridine k	96.36
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.35
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.34
PRK08116	268	hypothetical protein; Validated	96.32
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.31
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.29
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.26
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.25
PRK12422	445	chromosomal replication initiation protein; Provis	96.24
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.24
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.17
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.15
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.14
PRK15453	290	phosphoribulokinase; Provisional	96.11
PRK12377	248	putative replication protein; Provisional	96.11
PRK13695	174	putative NTPase; Provisional	96.08
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.08
PLN02840	421	tRNA dimethylallyltransferase	95.99
PRK12402	337	replication factor C small subunit 2; Reviewed	95.98
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.94
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.92
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.92
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.89
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.88
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.88
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	95.83
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.83
PLN02748	468	tRNA dimethylallyltransferase	95.83
PF05729	166	NACHT: NACHT domain	95.82
COG3911	183	Predicted ATPase [General function prediction only	95.8
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.78
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.78
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.75
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	95.74
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.74
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.73
COG2256	436	MGS1 ATPase related to the helicase subunit of the	95.72
PRK03992	389	proteasome-activating nucleotidase; Provisional	95.71
PRK13342	413	recombination factor protein RarA; Reviewed	95.71
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	95.71
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.7
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	95.67
PHA02544	316	44 clamp loader, small subunit; Provisional	95.67
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.67
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	95.67
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.67
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.66
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	95.62
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.62
PRK07952	244	DNA replication protein DnaC; Validated	95.61
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.6
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	95.6
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.59
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.59
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.58
COG1660	286	Predicted P-loop-containing kinase [General functi	95.57
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.55
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	95.54
PRK09183	259	transposase/IS protein; Provisional	95.54
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	95.52
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.51
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	95.51
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.49
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.48
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	95.48
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.47
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	95.47
KOG1969	877	consensus DNA replication checkpoint protein CHL12	95.44
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	95.44
PTZ00202	550	tuzin; Provisional	95.42
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.41
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	95.39
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	95.39
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.37
PLN02796	347	D-glycerate 3-kinase	95.37
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	95.36
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	95.35
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	95.35
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	95.35
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	95.34
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	95.34
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.33
PRK04195	482	replication factor C large subunit; Provisional	95.31
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	95.27
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.27
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	95.26
COG1855	604	ATPase (PilT family) [General function prediction	95.21
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.19
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.17
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.16
PRK13341	725	recombination factor protein RarA/unknown domain f	95.16
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.16
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	95.14
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.14
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	95.13
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	95.12
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	95.12
cd03116	159	MobB Molybdenum is an essential trace element in t	95.11
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.1
PHA02244	383	ATPase-like protein	95.1
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.09
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	95.09
PLN03046	460	D-glycerate 3-kinase; Provisional	95.08
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.07
CHL00195	489	ycf46 Ycf46; Provisional	95.07
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	95.07
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.06
PRK06921	266	hypothetical protein; Provisional	95.04
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.02
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	95.0
PF13479	213	AAA_24: AAA domain	94.98
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	94.97
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	94.96
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	94.94
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	94.91
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	94.89
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	94.88
PRK14087	450	dnaA chromosomal replication initiation protein; P	94.85
PRK13764	602	ATPase; Provisional	94.84
cd03112	158	CobW_like The function of this protein family is u	94.84
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	94.84
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	94.82
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	94.81
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	94.81
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	94.8
PRK08181	269	transposase; Validated	94.8
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	94.77
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	94.76
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	94.75
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	94.75
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	94.74
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	94.72
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.72
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	94.7
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.69
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.67
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	94.67
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	94.66
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	94.65
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	94.63
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	94.62
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	94.61
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.61
TIGR00101	199	ureG urease accessory protein UreG. This model rep	94.59
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	94.58
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	94.56
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.54
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	94.51
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	94.5
KOG1533	290	consensus Predicted GTPase [General function predi	94.5
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	94.49
PRK08533	230	flagellar accessory protein FlaH; Reviewed	94.46
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	94.44
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	94.42
PRK06835	329	DNA replication protein DnaC; Validated	94.41
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	94.41
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	94.4
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	94.35
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	94.34
PRK15455	644	PrkA family serine protein kinase; Provisional	94.29
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	94.29
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	94.28
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	94.28
PRK13768	253	GTPase; Provisional	94.28
PF13555	62	AAA_29: P-loop containing region of AAA domain	94.27
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	94.22
CHL00176	638	ftsH cell division protein; Validated	94.2
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	94.19
PRK05636	505	replicative DNA helicase; Provisional	94.17
COG0630	312	VirB11 Type IV secretory pathway, VirB11 component	94.16
TIGR02237	209	recomb_radB DNA repair and recombination protein R	94.16
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	94.15
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	94.12
cd01394	218	radB RadB. The archaeal protein radB shares simila	94.09
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	94.09
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	94.09
cd03114	148	ArgK-like The function of this protein family is u	94.08
KOG0054	1381	consensus Multidrug resistance-associated protein/	94.08
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	94.04
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	94.02
PF07726	131	AAA_3: ATPase family associated with various cellu	94.01
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	93.98
cd02034	116	CooC The accessory protein CooC, which contains a	93.97
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	93.95
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	93.95
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	93.94
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	93.94
PHA02624	647	large T antigen; Provisional	93.93
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	93.9
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	93.9
PRK05973	237	replicative DNA helicase; Provisional	93.89
CHL00095	821	clpC Clp protease ATP binding subunit	93.89
PRK08939	306	primosomal protein DnaI; Reviewed	93.88
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	93.87
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	93.86
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	93.85
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	93.85
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	93.82
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	93.82
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	93.79
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	93.76
PRK04296	190	thymidine kinase; Provisional	93.73
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	93.73
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	93.73
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	93.71
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	93.69
PRK08760	476	replicative DNA helicase; Provisional	93.67
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	93.67
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	93.67
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	93.65
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	93.65
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	93.65
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	93.64
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	93.62
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	93.61
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	93.61
COG5324	758	Uncharacterized conserved protein [Function unknow	93.59
TIGR00665	434	DnaB replicative DNA helicase. This model describe	93.59
cd03269	210	ABC_putative_ATPase This subfamily is involved in	93.58
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	93.56
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	93.56
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	93.56
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	93.52
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	93.51
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	93.51
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	93.5
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	93.49
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	93.48
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.48
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	93.47
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	93.46
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	93.45
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	93.45
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.45
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	93.44
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	93.43
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	93.41
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	93.41
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	93.4
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	93.37
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	93.37
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	93.36
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	93.34
cd03234	226	ABCG_White The White subfamily represents ABC tran	93.34
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	93.33
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	93.32
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	93.31
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	93.29
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	93.29
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	93.28
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	93.28
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	93.28
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	93.27
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.26
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	93.26
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	93.26
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	93.25
PLN03130	1622	ABC transporter C family member; Provisional	93.24
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	93.24
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	93.24
PRK13851	344	type IV secretion system protein VirB11; Provision	93.23
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	93.2
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	93.2
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	93.2
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	93.18
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	93.17
PRK09165	497	replicative DNA helicase; Provisional	93.15
PRK08506	472	replicative DNA helicase; Provisional	93.15
PRK06851	367	hypothetical protein; Provisional	93.15
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	93.15
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	93.14
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	93.14
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	93.13
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	93.1

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]

Probab=100.00  E-value=1.9e-36  Score=296.37  Aligned_cols=174  Identities=34%  Similarity=0.583  Sum_probs=157.8

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceee-CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN-GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS  120 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~-~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s  120 (435)
                      ..|+||++|++..+.|++|||.|++..    -+.|-+||||.|+. .|||||||+|.+             .|.||||||
T Consensus        87 ~~w~mn~~Drg~alaI~~dGL~CqSre----~KeWhGcRaT~Gl~gkGK~YyEvtitd-------------~GLCRVGWs  149 (725)
T KOG0349|consen   87 REWKMNKQDRGLALAIDEDGLACQSRE----KKEWHGCRATAGLYGKGKYYYEVTITD-------------KGLCRVGWS  149 (725)
T ss_pred             cccccCccccCceeeEcCCccccchhH----HhhhhccccccccccCceEEEEEEecc-------------Cceeeechh
Confidence            449999999999999999999998754    58899999999999 899999999985             599999999


Q ss_pred             cCCCCCCCCCCCCcceEEecCCceEeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCCcc
Q 013831          121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLG  200 (435)
Q Consensus       121 ~~~~~~~~lG~d~~S~gy~~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~l~  200 (435)
                      |.++ +.-+|.+..+|||+++|++.+|.++.+||++|+..|||||+||+++   .+|.|+|||+.||.||++++.++   
T Consensus       150 T~qa-sLdlGt~~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~---~~v~fsKNG~~lg~AF~ip~~~k---  222 (725)
T KOG0349|consen  150 TLQA-SLDLGTGLDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDS---RTVWFSKNGEQLGAAFSIPVKYK---  222 (725)
T ss_pred             hccc-ccccCccccccccCccCccccccccccccCcccccceeeEEEeccC---ceEEEecCccccceeEEcChhhc---
Confidence            9763 6789999999999999999999999999999999999999999999   89999999999999999876543   


Q ss_pred             ccccccccccCCCceeeEEEEcCeEEEEEccCCC-CCCCccccchhhhhcc
Q 013831          201 VVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQ-GLIPVEGYKSWVSALD  250 (435)
Q Consensus       201 ~~~~~~~g~~~~~~lfP~v~l~~~~v~~nFG~~~-~~~p~~g~~p~~~~~~  250 (435)
                                 +..|||||.++|+++.+|||.++ +|||-+||....+|.+
T Consensus       223 -----------n~~lfPAvvlkNael~fNFG~~~FKfpPgngFva~s~Ap~  262 (725)
T KOG0349|consen  223 -----------NSNLFPAVVLKNAELSFNFGSQPFKFPPGNGFVAVSDAPN  262 (725)
T ss_pred             -----------ccccchheeeccceEEEecCCCccccCCCCceEEeecCCc
Confidence                       67899999999999999999976 6777789988776553

>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=4.1e-30  Score=258.07  Aligned_cols=166  Identities=25%  Similarity=0.320  Sum_probs=146.9

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR  121 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~  121 (435)
                      ..|.|++.|++.+|.||+|.|+++.      .+++++|||+|||.+|.|||||+|++.          .++.++|+||++
T Consensus       291 ~tv~l~~hdrA~ql~Is~drlt~tg------eKGy~MvRAshgv~~G~WYFEI~vd~~----------pd~~a~RlGwsq  354 (544)
T KOG2626|consen  291 DTVNLSWHDRAEQLKISEDRLTATG------EKGYRMVRASHGVLEGAWYFEIKVDEM----------PDDAAIRLGWSQ  354 (544)
T ss_pred             hhhhhhhhcccccccccccceeeec------ccceeeeeecccccccceeEEEEeecC----------CCccceeeeccc
Confidence            4799999999999999999999987      589999999999999999999999874          157899999999


Q ss_pred             CCCC-CCCCCCCCcceEEe-cCCceEeCCCcccCCCCCCCCCEEEEEEecCC----------------------------
Q 013831          122 GDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLES----------------------------  171 (435)
Q Consensus       122 ~~~~-~~~lG~d~~S~gy~-~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~----------------------------  171 (435)
                      .... ..+||.|++||||+ ..|.++|.+....|-..|+.||||||+|+++.                            
T Consensus       355 ~~g~LqApvGYdkfsY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~  434 (544)
T KOG2626|consen  355 LYGNLQAPVGYDKFSYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFED  434 (544)
T ss_pred             cccccccccccccccccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEc
Confidence            7754 78999999999996 57999999999999999999999999999986                            


Q ss_pred             -------------CCceeEEEEeCccceeecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEccCCCCCC
Q 013831          172 -------------KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLI  237 (435)
Q Consensus       172 -------------~p~~~i~ft~NG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~~~~~  237 (435)
                                   .|...|.|+|||+.+|+||+.   ..             ..+.|||+||+. .|.+.+|||+.+.++
T Consensus       435 ~d~v~k~~k~l~~~pgS~I~f~KNG~~qG~Ay~n---i~-------------~~G~YyPaIS~yks~tv~~nfGP~F~~~  498 (544)
T KOG2626|consen  435 PDNVAKIEKTLKIKPGSEIEFFKNGVSQGVAYEN---IY-------------KAGAYYPAISIYKSCTVKFNFGPQFRYP  498 (544)
T ss_pred             cchhhhhhhccccCCCceEEEeecccchhhhhhh---hh-------------ccccccceeeecccceEEEeccccccCC
Confidence                         134678999999999999972   10             136899999998 899999999999887


Q ss_pred             Cc
Q 013831          238 PV  239 (435)
Q Consensus       238 p~  239 (435)
                      |-
T Consensus       499 p~  500 (544)
T KOG2626|consen  499 PC  500 (544)
T ss_pred             cc
Confidence            63

>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function

Probab=99.86  E-value=5.3e-21  Score=163.51  Aligned_cols=116  Identities=29%  Similarity=0.469  Sum_probs=98.2

Q ss_pred             CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----CCCCCCCCCcceEEecCC-ceEeCCCcccCCCCCCC-C
Q 013831           87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----PVGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-G  160 (435)
Q Consensus        87 ~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~----~~~~lG~d~~S~gy~~~G-~~~~~~~~~~yg~~f~~-g  160 (435)
                      +|+|||||+|...             ..++|||++...    ....+|++..||+|+..+ .++++.....++.+++. |
T Consensus         1 sG~~YwEV~v~~~-------------~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (124)
T PF00622_consen    1 SGKHYWEVEVDSG-------------GSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPG   67 (124)
T ss_dssp             SSEEEEEEEETGG-------------CTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTT
T ss_pred             CcCEEEEEEEecC-------------cCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCC
Confidence            5999999999864             339999999775    256889999999999877 88899888999999998 9


Q ss_pred             CEEEEEEecCCCCceeEEEEeCcccee-ecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEccCCC
Q 013831          161 DTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQ  234 (435)
Q Consensus       161 DvIGc~ld~~~~p~~~i~ft~NG~~lg-~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~~  234 (435)
                      |||||+||++.   ++|+|++||+.++ .+|+. .+               ...+|||+|++. ++.+.+|||++|
T Consensus        68 dvIG~~lD~~~---g~l~F~~ng~~~~~~~f~~-~~---------------~~~~l~P~v~~~~~~~~~~n~g~~~  124 (124)
T PF00622_consen   68 DVIGCGLDLDN---GELSFYKNGKFLGIYAFTD-ID---------------FSEPLYPAVSLGGGQSVELNFGQRP  124 (124)
T ss_dssp             SEEEEEEETTT---TEEEEEETTEEEEEEEEES-CT---------------TSSSBEEEEEEESTSEEEEEEEC--
T ss_pred             cEEEEEEeecc---cEEEEEECCccceeEEEEC-CC---------------CCCcEEEEEEecCCCEEEEEeCCCC
Confidence            99999999998   8999999999999 77751 11               146999999999 899999999975

Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....

>smart00449 SPRY Domain in SPla and the RYanodine Receptor

Probab=99.86  E-value=9e-21  Score=162.06  Aligned_cols=114  Identities=33%  Similarity=0.528  Sum_probs=97.2

Q ss_pred             CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCC---CCCCCCCCcceEEecCC-ceEeCCCcccCCCCCCC-CC
Q 013831           87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP---VGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-GD  161 (435)
Q Consensus        87 ~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~~---~~~lG~d~~S~gy~~~G-~~~~~~~~~~yg~~f~~-gD  161 (435)
                      +|+|||||+|.+             .+.++|||++...+   ...+|++.+||+|+.++ .++++.....|+.++.. ||
T Consensus         1 sG~~YwEV~v~~-------------~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd   67 (122)
T smart00449        1 SGRHYFEVEIFD-------------GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGD   67 (122)
T ss_pred             CCcEEEEEEEcC-------------CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCC
Confidence            589999999984             47899999997654   56899999999998765 78888777789999997 99


Q ss_pred             EEEEEEecCCCCceeEEEEeCccce-eecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEccC
Q 013831          162 TIICAIDLESKPLATIGFAKNGKWL-GTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSV  232 (435)
Q Consensus       162 vIGc~ld~~~~p~~~i~ft~NG~~l-g~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~  232 (435)
                      +|||+||++.   ++|+|++||+.+ +.+|.. ..               ...++||++++. ...+.+|||+
T Consensus        68 ~iGv~lD~~~---g~l~F~~ng~~~~~~~f~~-~~---------------~~~~l~P~~~~~~~~~~~~n~g~  121 (122)
T smart00449       68 VIGCFLDLEA---GTISFYKNGKYLHGLAFFD-VK---------------FSGPLYPAVSLGSGCSVRLNFGP  121 (122)
T ss_pred             EEEEEEECCC---CEEEEEECCCEeeeEEEec-cC---------------CCCcEeeEEEcCCCCEEEEEecC
Confidence            9999999998   899999999999 788851 11               246999999998 4589999997

Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.85  E-value=3.5e-20  Score=162.40  Aligned_cols=139  Identities=27%  Similarity=0.420  Sum_probs=102.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v  347 (435)
                      ||+|+|+|||||||||+.|++.++   +.+|+.|.++..+..........+..    ..+.+.+.+...+..+++.|.++
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g~~~   73 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRRRLAGEDPPSPSDYIE----AEERAYQILNAAIRKALRNGNSV   73 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHHHHCCSSSGCCCCCHH----HHHHHHHHHHHHHHHHHHTT-EE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHHHHcccccccchhHHH----HHHHHHHHHHHHHHHHHHcCCCc
Confidence            799999999999999999999987   78999999988764211111111122    22233334455666777999999


Q ss_pred             EEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCC--CCcHHHHHHHHhcccCC
Q 013831          348 IIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGK--EVPADAVNNMLANYVLP  413 (435)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~--~vp~~vi~~m~~~fe~P  413 (435)
                      |||+||+.++.|..+.+.+..++ .+.+|+|.++ +++.+|+..|....++  .++.+++.+|++.||+|
T Consensus        74 vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~p  143 (143)
T PF13671_consen   74 VVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARFEPP  143 (143)
T ss_dssp             EEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHHH--
T ss_pred             eeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhhccC
Confidence            99999999999998888877777 7888999987 8999999999765432  48999999999999987

...

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.82  E-value=3.6e-19  Score=186.15  Aligned_cols=137  Identities=20%  Similarity=0.223  Sum_probs=112.8

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ...++||+|+|+|||||||||++++...+   +++||.|.+-                .|+.+..        .++.+++
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g---~~~vn~D~lg----------------~~~~~~~--------~a~~~L~  418 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAG---YKHVNADTLG----------------STQNCLT--------ACERALD  418 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcC---CeEECcHHHH----------------HHHHHHH--------HHHHHHh
Confidence            35689999999999999999999998865   8899998641                1222222        3456679


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcC--CCCcHHHHHHHHhcccCCCCCCC
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMG--KEVPADAVNNMLANYVLPVNKDT  418 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~--~~vp~~vi~~m~~~fe~P~~~~~  418 (435)
                      +|++||||+||++++.|++++++++.++ .+.+++|++| ++|++||..|.....  ..+|++++..|.++|++|+.   
T Consensus       419 ~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~---  495 (526)
T TIGR01663       419 QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPAL---  495 (526)
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCc---
Confidence            9999999999999999999888888876 7888999998 899999999965322  35789999999999999986   


Q ss_pred             CCCCcccceecccc
Q 013831          419 PGSDELFDQRRGSA  432 (435)
Q Consensus       419 ~~~~e~Fd~i~~~~  432 (435)
                         .|||+.|..+-
T Consensus       496 ---~EGF~~I~~v~  506 (526)
T TIGR01663       496 ---AEGFIAIHEIN  506 (526)
T ss_pred             ---ccCceEEEEEe
Confidence               99999997653

Note that the EC number for the kinase function is: 2.7.1.78

>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]

Probab=99.80  E-value=7.9e-22  Score=206.55  Aligned_cols=368  Identities=33%  Similarity=0.469  Sum_probs=277.9

Q ss_pred             CCCCCCCCCCCeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCC
Q 013831           32 SSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQ  111 (435)
Q Consensus        32 ~~~~~~~~~~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~  111 (435)
                      ..-..+++ +..++.|..+|+.+ ....+..+....+.+.+...|.+.|+.++...+...||-++.+.....+......+
T Consensus        27 ~~~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  104 (558)
T KOG2242|consen   27 AEEDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSRGEVCFEMRINEPEEVPHFQPLEPD  104 (558)
T ss_pred             cccccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecCCcchhhcccccccccCCCCccccc
Confidence            34455677 88899999999999 88888877777777778889999999999999988888888766544433333455


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCcceEEecCCceEeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeeccc
Q 013831          112 QHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQ  191 (435)
Q Consensus       112 ~~~~rvG~s~~~~~~~~lG~d~~S~gy~~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~  191 (435)
                      ....+++|+.... -..++++..+|+|...+.+.++.....|++.|...|+|||.+++.......+.|.+||+.++.+|-
T Consensus       105 ~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~~  183 (558)
T KOG2242|consen  105 PHDVRIGWSLDSI-RTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESFL  183 (558)
T ss_pred             cccccccccchhh-hhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccccccCcchhhhccchhhhhhc
Confidence            6788999997542 457899999999999999999999999999999999999999987533357899999999999996


Q ss_pred             ccCCCCCccccccccccccCCCceeeEEEEcCeEEEEEccCCC-CCCCccccchhhhhccCCCcccccccC-CCCcceEE
Q 013831          192 FDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQ-GLIPVEGYKSWVSALDDGNSVLGPTFC-NMKDCEVM  269 (435)
Q Consensus       192 ~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~~~~v~~nFG~~~-~~~p~~g~~p~~~~~~~~~~~~~p~~~-~~~~~~li  269 (435)
                      ++...             .....++|++.-+++.|..|||+.. .+.+..-...+..++.....+..|.++ ...+|.++
T Consensus       184 l~~~~-------------~~~~~~~p~vl~~~~~ve~~f~~~~ag~~~v~~~~~~i~~~~~~~~~~~~~~p~~~~~c~~~  250 (558)
T KOG2242|consen  184 LSKED-------------LGGQALYPHVLRKNCAVEGNFGQKAAGYEPVKEEYTFIQNYPLEERLRGPVGPETKKECEVF  250 (558)
T ss_pred             chhhh-------------ccCcccCcccccCcceeccccccccccccccchhhhhhhhcchhhcccCCCCccccccchhh
Confidence            54321             2355799999999999999999975 343333233345555544455566654 56789999


Q ss_pred             EEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHH-HHhcCCCeEE
Q 013831          270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS-RASRTPRNFI  348 (435)
Q Consensus       270 im~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~-~al~~g~~vI  348 (435)
                      +|+|+||+||++|+-..+.+.+.+..-+.+.-.++..++..|......+...+...++++..|+..++. .++...++.|
T Consensus       251 ~~~g~~~~g~~~~~le~~~q~~~~~~~i~g~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~r~~~  330 (558)
T KOG2242|consen  251 MMRGLPGAGKTSWALEPAAQNPEKGGNILGGNTIMPKMRVVGLEEQTNDAFSRGYLIQQAGQCLNKLPRDIFLRKKRNYI  330 (558)
T ss_pred             hcccccccccchhhhhhhhhCccccCCccccccccCCcCcccchhhhhccccccchhhccccccccchhhhhhhhhhhhh
Confidence            999999999999999999887765434444444555554444321112222334455566666666665 6788999999


Q ss_pred             EeCCCcCHHHHHHHHHHHhcCCcEEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          349 IDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       349 lD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                      +|.+|++...+.+.+..+..+.++..+.+++.+.+..|...|......++++.++..|...+..|..
T Consensus       331 ~d~~~~s~~~~~r~~~~~~~~~~~~p~~~~~~~d~~s~~~v~~~~~~~d~~~~~~~e~~~~~~~~~~  397 (558)
T KOG2242|consen  331 LDQTNLSSSAQRRKMGLFSQFSRKAPVVCPAFEDLKSRTIVRTEVEGKDVGETAVLEMNANFTLPGV  397 (558)
T ss_pred             hhccccchhhceecccccccccccCCCcCCchhhhccccceEeeeecccCCcceEEEEeeeeccCch
Confidence            9999999998887777777777888889999999999998887666677877777777777776654

>COG4639 Predicted kinase [General function prediction only]

Probab=99.78  E-value=3.6e-18  Score=148.51  Aligned_cols=128  Identities=24%  Similarity=0.319  Sum_probs=97.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc-CCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      ..|++|+|+|||||||||+++.....     +|+.|+++..++. .+.   ......|+.+.+    .+...++..+++|
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~~~~-----~lsld~~r~~lg~~~~~---e~sqk~~~~~~~----~l~~~l~qrl~~G   69 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFLQNY-----VLSLDDLRLLLGVSASK---ENSQKNDELVWD----ILYKQLEQRLRRG   69 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCCCcc-----eecHHHHHHHhhhchhh---hhccccHHHHHH----HHHHHHHHHHHcC
Confidence            46899999999999999999877643     6788998876642 221   111222222222    2223455567999


Q ss_pred             CeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLAN  409 (435)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~  409 (435)
                      +..|||+||+.++.|++++.++..|+ ...+|+|++| ++|.+||+.|    .+.||++||.+|...
T Consensus        70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~----~Rqv~~~VI~r~~r~  132 (168)
T COG4639          70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR----ERQVPEEVIPRMLRE  132 (168)
T ss_pred             CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc----chhCCHHHHHHHHHH
Confidence            99999999999999999988888887 5556888888 9999999977    567999999999876

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.75  E-value=1.1e-17  Score=151.60  Aligned_cols=138  Identities=20%  Similarity=0.287  Sum_probs=100.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEeccHHHHHHhccCCCccCCCChHHHHH-HHHHHHHHHHHHHHHHhc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLILEQMKVPGLLRKHNYSERFQC-LMGRANAIFDVLLSRASR  342 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~ll~~al~  342 (435)
                      +.+||+.|+|||||||+|+.|++.+..+.  .++++.|..+--  +.    +. +.+.|++ +.+.-.+...+++..|++
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i--~~----DE-slpi~ke~yres~~ks~~rlldSalk   73 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGI--LW----DE-SLPILKEVYRESFLKSVERLLDSALK   73 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhe--ec----cc-ccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            35899999999999999999998775432  345555543211  11    11 1122222 222111222236666665


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                       ..-||+|+||++.++|+++....+++. ..++|++.+| +.|++||..|    +...|++++++|+.+||.|..
T Consensus        74 -n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er----gepip~Evl~qly~RfEePn~  143 (261)
T COG4088          74 -NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER----GEPIPEEVLRQLYDRFEEPNP  143 (261)
T ss_pred             -ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC----CCCCCHHHHHHHHHhhcCCCC
Confidence             889999999999999999887777766 8999999987 9999999777    788999999999999998865

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.75  E-value=1.6e-17  Score=161.06  Aligned_cols=138  Identities=22%  Similarity=0.292  Sum_probs=90.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      +-||+|||+|||||||+|++|.+.+.  +..+++++.|.+.-.   ..   .|.....+    +.++..++..+++++..
T Consensus         1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~---~~---~y~~~~~E----k~~R~~l~s~v~r~ls~   70 (270)
T PF08433_consen    1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID---RN---DYADSKKE----KEARGSLKSAVERALSK   70 (270)
T ss_dssp             E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T---TS---SS--GGGH----HHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc---hh---hhhchhhh----HHHHHHHHHHHHHhhcc
Confidence            35899999999999999999987643  234678886665411   11   11111212    23334566677888888


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                      ...||+|++|+.+++|.+++++++.++ .+++|+|.++ +.|++||.+|..  ...+++++|.+|..+||.|..
T Consensus        71 ~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~--~~~~~~e~i~~m~~RfE~P~~  142 (270)
T PF08433_consen   71 DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE--PERYPEETIDDMIQRFEEPDP  142 (270)
T ss_dssp             -SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT---S--S-HHHHHHHHHH---TTS
T ss_pred             CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC--CCCCCHHHHHHHHHHhcCCCC
Confidence            999999999999999999999988887 8899999998 999999999942  334999999999999999975

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]

Probab=99.72  E-value=2.5e-16  Score=134.91  Aligned_cols=166  Identities=23%  Similarity=0.284  Sum_probs=134.0

Q ss_pred             CCCCCCCC-CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCC
Q 013831           34 ASGPRSQK-QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQ  112 (435)
Q Consensus        34 ~~~~~~~~-~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~  112 (435)
                      .+-++++. ..|.||.....+++.|-+.++++++         .+++.|+.++...|-||||+|.+             .
T Consensus        18 ~s~~rl~e~P~V~LD~~hMG~dVvilk~g~RicG---------tGG~lAtaPlvQnKsYFevkiQ~-------------t   75 (197)
T KOG4030|consen   18 ASYPRLNEVPTVRLDVGHMGKDVVILKEGERICG---------TGGALATAPLVQNKSYFEVKIQQ-------------T   75 (197)
T ss_pred             ccchhhhcCCcEEeehhccCCcEEEEecCcEEec---------cCceeeeeeeecccceEEEEEee-------------c
Confidence            34445554 7899999999999999999999874         47899999999999999999985             5


Q ss_pred             CcEEEEEecCCCC--CCCCCCCCcceEEecCCceEeCCCcc---cCCCCCCCCCEEEEEEecCCCCceeEEEEeCcccee
Q 013831          113 HVCRVGTSRGDDP--VGKLGETEQSFGFGGTGKFSHGGNFL---NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG  187 (435)
Q Consensus       113 ~~~rvG~s~~~~~--~~~lG~d~~S~gy~~~G~~~~~~~~~---~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg  187 (435)
                      |.+.||.++++++  ..+.|.|.+||+.+++|...||....   +-..--.+|||||+..|.     .++.|+.||+.+-
T Consensus        76 G~WgiGlat~q~~l~~~p~g~d~~sw~~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayDH-----VELnfY~NGKn~e  150 (197)
T KOG4030|consen   76 GTWGIGLATKQSPLDKVPGGCDEKSWGIRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYDH-----VELNFYVNGKNVE  150 (197)
T ss_pred             ceeeeeeeeccCccccCCCCCcceeEEEccCCchhcccHHHhcCccccCCccCcEEEEEeee-----EEEEEEEcCceec
Confidence            8999999998765  45789999999999999999987643   112224899999999986     4789999999998


Q ss_pred             ecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEccCCCCCCCccccchh
Q 013831          188 TAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVEGYKSW  245 (435)
Q Consensus       188 ~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~~~~~p~~g~~p~  245 (435)
                      ..++.                  ..+++||.|.+. ++.+.+.|-. +..-||+||..+
T Consensus       151 ~p~~g------------------vRG~vyPvvYVddsAILD~~f~n-F~h~PPpGFe~I  190 (197)
T KOG4030|consen  151 DPITG------------------VRGPVYPVVYVDDSAILDLKFKN-FTHAPPPGFEEI  190 (197)
T ss_pred             ccccc------------------cccceeeEEEeCCceEEEEEecc-cccCCCCChhhe
Confidence            87751                  156999999998 6667777733 455677887654

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.70  E-value=2.5e-16  Score=151.60  Aligned_cols=133  Identities=24%  Similarity=0.513  Sum_probs=102.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      ||+|+|+|||||||+|+.+++.+.  +..+++++.|.+++.+..        +...++..   +......+++.++..+.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~--------~~~~~e~~---~~~~~~~~i~~~l~~~~   69 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV--------WKEKYEEF---IRDSTLYLIKTALKNKY   69 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH--------hhHHhHHH---HHHHHHHHHHHHHhCCC
Confidence            589999999999999999998763  234778888888765421        11112211   22233446677788999


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                      .||+|++|+...+|..+++.+..++ .+++|+|.+| +++++|+..|    +..+|++++.+|..+|+.|..
T Consensus        70 ~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R----~~~~~~~~i~~l~~r~e~p~~  137 (249)
T TIGR03574        70 SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER----GEKIPNEVIKDMYEKFDEPGT  137 (249)
T ss_pred             eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC----CCCCCHHHHHHHHHhhCCCCC
Confidence            9999999999999998777777766 7888999987 9999999988    456889999999999998864

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.69  E-value=4.3e-16  Score=153.69  Aligned_cols=140  Identities=22%  Similarity=0.360  Sum_probs=103.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      +.+|+|+|+|||||||+|+.+++.+++  +..|+.|.++..+...+....+.|....+..   ........+..++..|.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~--~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~g~   76 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPK--AVNVNRDDLRQSLFGHGEWGEYKFTKEKEDL---VTKAQEAAALAALKSGK   76 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCC--CEEEeccHHHHHhcCCCcccccccChHHHHH---HHHHHHHHHHHHHHcCC
Confidence            479999999999999999999999842  7889999988764211111112232211111   12233345566678899


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCC
Q 013831          346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP  413 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P  413 (435)
                      +||||+|+.++.+|..+.++++.++ .+.+|++.++ +++++|+.+|   +++.+|++++++|+++++.+
T Consensus        77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~  143 (300)
T PHA02530         77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR---GERAVPEDVLRSMFKQMKEY  143 (300)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHh
Confidence            9999999999999997666666665 6777888887 8999999999   36789999999998888744

>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]

Probab=99.69  E-value=5.8e-17  Score=172.88  Aligned_cols=148  Identities=27%  Similarity=0.426  Sum_probs=118.9

Q ss_pred             eeeEee--cceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC-CCCCCCCCCcceEEecC-CceEeCCCcc
Q 013831           76 WSGARA--NVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD-PVGKLGETEQSFGFGGT-GKFSHGGNFL  151 (435)
Q Consensus        76 ~~~~ra--~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~-~~~~lG~d~~S~gy~~~-G~~~~~~~~~  151 (435)
                      ++-.|+  +|+|..|+||||.....             .|.+||||+...| ++..+|.|...|+|++. ++.+| ....
T Consensus      1092 ~r~fr~eksyavkagkwyfefe~vt-------------~gdmrvgwarpgc~pd~elgadd~af~fdg~k~qrwh-qg~~ 1157 (5019)
T KOG2243|consen 1092 FRFFRAEKSYAVKAGKWYFEFETVT-------------AGDMRVGWARPGCQPDQELGADDQAFAFDGFKAQRWH-QGNE 1157 (5019)
T ss_pred             eEEEeeehhheeeccceEEEEEEee-------------ccceeecccCCCCCcchhhCCccceeeeccchhhhhh-cccc
Confidence            444454  58899999999999884             5899999999876 47899999999999875 44444 4456


Q ss_pred             cCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEc
Q 013831          152 NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQF  230 (435)
Q Consensus       152 ~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nF  230 (435)
                      .||..|+.||||||+||++.   .+|.||+||+.|-..     ....|++++.|+     ++.|.|.+++. ...-++||
T Consensus      1158 ~~grswq~gdvvgcmi~l~d---~sm~ftlngeili~~-----~gselaf~d~di-----~~gfipic~lg~aqigrmn~ 1224 (5019)
T KOG2243|consen 1158 HFGRSWQAGDVVGCMIDLDD---ASMIFTLNGEILIDD-----KGSELAFADFDI-----EDGFIPICCLGLAQIGRMNF 1224 (5019)
T ss_pred             ccccccCCCCeEEEEEeccc---ceEEEEEcCeEEEcC-----CCCeeeeccccc-----cCCceeeeehhhHhhccccc
Confidence            89999999999999999998   799999999988643     223466777775     57899999998 66679999


Q ss_pred             cCCC---C----CCCccccchhhhhcc
Q 013831          231 SVEQ---G----LIPVEGYKSWVSALD  250 (435)
Q Consensus       231 G~~~---~----~~p~~g~~p~~~~~~  250 (435)
                      |...   +    |-.++||.||+-++.
T Consensus      1225 g~d~st~k~~ticglqeg~epfavn~n 1251 (5019)
T KOG2243|consen 1225 GKDASTFKFFTICGLQEGFEPFAVNMN 1251 (5019)
T ss_pred             CCcccceeeeeeecccccCccceeccc
Confidence            9863   2    456899999987654

>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]

Probab=99.67  E-value=8.3e-16  Score=140.88  Aligned_cols=166  Identities=22%  Similarity=0.321  Sum_probs=132.7

Q ss_pred             CCCCCCeEEeCcCCCCCCeEEcCCC-ceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcE
Q 013831           37 PRSQKQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVC  115 (435)
Q Consensus        37 ~~~~~~~v~l~~~d~~~~l~is~d~-l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~  115 (435)
                      ..+.+..+.||+.|++.++.+-.++ ++.+-+..   +....++|+..+...|..+|||.+...+          .+.+.
T Consensus        20 ~~~~~~~~~w~~~drs~nv~vk~~~~~tfhrhpv---aqstd~~rGk~g~~~g~h~w~i~w~~r~----------~GT~a   86 (242)
T KOG3953|consen   20 ALGVQAQHGWSPSDRSLNVFVKLPDGLTFHRHPV---AQSTDGIRGKRGYSRGRHAWEIAWPNRQ----------RGTHA   86 (242)
T ss_pred             chhhHHhhccCcccccceeEEecCCcceEEecCC---ccccccccceeeeccCceEEEEEecCCc----------cCCcc
Confidence            3455556999999999999998876 77654322   3458999999999999999999998743          23456


Q ss_pred             EEEEecCCCC------CCCCCCCCcceEEe-cCCceEeCCCc-ccC-----CCCCCCCCEEEEEEecCCCCceeEEEEeC
Q 013831          116 RVGTSRGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF-LNF-----GEKFGVGDTIICAIDLESKPLATIGFAKN  182 (435)
Q Consensus       116 rvG~s~~~~~------~~~lG~d~~S~gy~-~~G~~~~~~~~-~~y-----g~~f~~gDvIGc~ld~~~~p~~~i~ft~N  182 (435)
                      -||.+|..++      ...||++.+|||++ +....+|++.. ..|     .+.|..+|.|.|.||++.   +++.|.+|
T Consensus        87 vVGIaTk~Aplha~gy~aLlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~e---gtl~F~~~  163 (242)
T KOG3953|consen   87 VVGIATKVAPLHAVGYTALLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIE---GTLSFAAD  163 (242)
T ss_pred             eEEEEcccCchhhhHHHHHhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeecc---ceEEEEEC
Confidence            6888887764      46899999999998 45678888732 122     467999999999999999   89999999


Q ss_pred             ccceeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEccCCCC
Q 013831          183 GKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQG  235 (435)
Q Consensus       183 G~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nFG~~~~  235 (435)
                      |++||+||+.   +              .+..|||+||..  ++++++-+=..+.
T Consensus       164 ~e~LGvAFRg---L--------------~~~~LYP~Vsav~g~~Evtm~Ylg~~~  201 (242)
T KOG3953|consen  164 GEYLGVAFRG---L--------------KDKKLYPAVSAVWGHCEVTMKYLGTLD  201 (242)
T ss_pred             CeEEeeeecC---C--------------CCCcceeeeeehhcceeEEEEEeCCcC
Confidence            9999999972   2              267999999986  8999998866554

>COG0645 Predicted kinase [General function prediction only]

Probab=99.66  E-value=4.3e-15  Score=131.72  Aligned_cols=155  Identities=17%  Similarity=0.099  Sum_probs=115.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccC---CCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRK---HNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ++++|+|+|||||||+|+.+.+.++   +++|.+|.+|+.|.-.+..+.   ..|++.   +.+.....+....+.++..
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lg---A~~lrsD~irk~L~g~p~~~r~~~g~ys~~---~~~~vy~~l~~~A~l~l~~   75 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLG---AIRLRSDVIRKRLFGVPEETRGPAGLYSPA---ATAAVYDELLGRAELLLSS   75 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcC---ceEEehHHHHHHhcCCcccccCCCCCCcHH---HHHHHHHHHHHHHHHHHhC
Confidence            6899999999999999999999998   789999999998742111111   124432   2222233344455666899


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCCCCCCCC
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGS  421 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~~~~~~~  421 (435)
                      |.+||+|+|+..+.+|..+...++.-+ .+.+|.|+.| +++..|+..|.. ...+-.-.+++.+...++..+..+.++.
T Consensus        76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~-d~sDA~~~il~~q~~~~~~~~~~~~~~~  154 (170)
T COG0645          76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG-DASDATFDILRVQLAEDEPWTEWETADT  154 (170)
T ss_pred             CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC-CcccchHHHHHHHHhhhCCcccccchhh
Confidence            999999999999999998666666655 7788899988 899999999952 1233346788888899988877777777


Q ss_pred             Cccccee
Q 013831          422 DELFDQR  428 (435)
Q Consensus       422 ~e~Fd~i  428 (435)
                      ..-|+..
T Consensus       155 ~~~~~~~  161 (170)
T COG0645         155 DTARTRD  161 (170)
T ss_pred             ccccccc
Confidence            7776654

>PRK06762 hypothetical protein; Provisional

Probab=99.61  E-value=2.9e-15  Score=134.98  Aligned_cols=134  Identities=16%  Similarity=0.125  Sum_probs=96.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      +.+|+|+|+|||||||+|+.+++.++. .+++++.|.++..+.  +...... ...++.        +..++..+++.|.
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~-~~~~i~~D~~r~~l~--~~~~~~~-~~~~~~--------~~~~~~~~~~~g~   69 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGR-GTLLVSQDVVRRDML--RVKDGPG-NLSIDL--------IEQLVRYGLGHCE   69 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEecHHHHHHHhc--cccCCCC-CcCHHH--------HHHHHHHHHhCCC
Confidence            579999999999999999999998852 377889999887652  1110000 011111        1223444567899


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHh-cCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831          346 NFIIDQTNVFKSARKRKLRLFV-NFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV  414 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~-~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~  414 (435)
                      +||+|.++....+|.. ++.++ .++ ++.+|++++| +++++|+.+|..  .+..+++.++++++.++.+.
T Consensus        70 ~vild~~~~~~~~~~~-~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~~~~~~  138 (166)
T PRK06762         70 FVILEGILNSDRYGPM-LKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNPHDTLG  138 (166)
T ss_pred             EEEEchhhccHhHHHH-HHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhhcCCcC
Confidence            9999999877776764 55444 444 6788999987 999999999953  45678999999998887553

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.59  E-value=2.2e-14  Score=126.95  Aligned_cols=134  Identities=16%  Similarity=0.217  Sum_probs=92.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc----cCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK----VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~----~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ||+|+|+|||||||+|+.+++.++   +..++.|.++....    ..|..........|.   .....   ......+..
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~l~~~   71 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG---APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWL---QALTD---ALLAKLASA   71 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC---CEEEeCcccccHHHHHHHHcCCCCCccchhhHH---HHHHH---HHHHHHHhC
Confidence            589999999999999999999875   56788898765311    123211000012221   11111   112122257


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                      +.+||+|+++.....|+. ++.++ ++ .+.+|+|.++ +++.+|+..|.   ++..+.+.+..+.+.|++|+.
T Consensus        72 ~~~vVid~~~~~~~~r~~-~~~~~-~~~~~~~v~l~~~~~~~~~R~~~R~---~~~~~~~~~~~~~~~~~~p~~  140 (150)
T cd02021          72 GEGVVVACSALKRIYRDI-LRGGA-ANPRVRFVHLDGPREVLAERLAARK---GHFMPADLLDSQFETLEPPGE  140 (150)
T ss_pred             CCCEEEEeccccHHHHHH-HHhcC-CCCCEEEEEEECCHHHHHHHHHhcc---cCCCCHHHHHHHHHHhcCCCC
Confidence            889999999999888875 44443 33 6788899887 89999999994   455779999999999999986

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.52  E-value=2.4e-13  Score=135.49  Aligned_cols=144  Identities=16%  Similarity=0.201  Sum_probs=98.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHH-------------
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANA-------------  331 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~-------------  331 (435)
                      +.+++|+|||||||+++.+...+.   +..+.+++.|+++......+.. ...-...|....+...+             
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~-~~~~~~~~k~~R~~i~~~le~~v~a~~~g~   79 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQ-SREIPSQWKQFRQELLKYLEHFLVAVINGS   79 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhc-CCCcHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            468999999999999999886542   2336678888765211100000 00011122111111111             


Q ss_pred             -----------------------------------HHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEE
Q 013831          332 -----------------------------------IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVV  375 (435)
Q Consensus       332 -----------------------------------~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv  375 (435)
                                                         ....++..++.++..||||++|+.+.+|.+++++++.++ .+++|
T Consensus        80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V  159 (340)
T TIGR03575        80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL  159 (340)
T ss_pred             cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence                                               112233334456678999999999999999888888876 88999


Q ss_pred             EECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCCC
Q 013831          376 VFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNK  416 (435)
Q Consensus       376 ~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~~  416 (435)
                      +|++| +++++||.+|    +..+|+++++.|..+||.|...
T Consensus       160 ~ld~ple~~l~RN~~R----~~~v~devie~m~~r~E~P~~~  197 (340)
T TIGR03575       160 FLDCPVESCLLRNKQR----PVPLPDETIQLMGRKIEKPNPE  197 (340)
T ss_pred             EEeCCHHHHHHHHhcC----CCCCCHHHHHHHHHHhcCCCCC
Confidence            99998 9999999999    4679999999999999999853

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.48  E-value=9.2e-13  Score=123.84  Aligned_cols=145  Identities=19%  Similarity=0.210  Sum_probs=93.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCC---hHHHHHHH-HHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNY---SERFQCLM-GRANAIFDVLLS  338 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~---~~~~~~~~-~~~~~~~~~ll~  338 (435)
                      ..-+|+||||||+|||++|++|++.+.  +-+..+++....|+++..... ....|   .....++. +.+..++..++.
T Consensus        11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~-~~~ff~p~n~~~~~~R~~~a~~~l~dl~~   89 (222)
T PF01591_consen   11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQ-DAEFFDPDNEEAKKLREQIAKEALEDLIE   89 (222)
T ss_dssp             --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S--GGGGSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccccc-ccccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999998753  223567777788887642110 01112   22222233 346678888888


Q ss_pred             HHh-cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC---hHHHHHHHHHhhhhc----CCCCcHHHHHHHHhcc
Q 013831          339 RAS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK---PEDLKIRSVKRFKEM----GKEVPADAVNNMLANY  410 (435)
Q Consensus       339 ~al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~---~ee~~~R~~~R~~~~----~~~vp~~vi~~m~~~f  410 (435)
                      ... +.|...|+|+||.+++.|+.+++.+...+ +.++++++   +++++++|..+....    .+..++++++++++++
T Consensus        90 ~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~-~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~RI  168 (222)
T PF01591_consen   90 WLQEEGGQVAIFDATNSTRERRKMLVERFKEHG-IKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKRI  168 (222)
T ss_dssp             HHHTS--SEEEEES---SHHHHHHHHHHHHHTT--EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHHH
T ss_pred             HHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHH
Confidence            877 68899999999999999999888888765 55555543   368888888876544    2345678888887765


Q ss_pred             c
Q 013831          411 V  411 (435)
Q Consensus       411 e  411 (435)
                      +
T Consensus       169 ~  169 (222)
T PF01591_consen  169 E  169 (222)
T ss_dssp             H
T ss_pred             H
Confidence            4

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.44  E-value=1.9e-12  Score=117.88  Aligned_cols=123  Identities=15%  Similarity=0.143  Sum_probs=80.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-c-CCCChH---HH-HHHHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-R-KHNYSE---RF-QCLMGRANAIFDVLLSR  339 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-~-~~~~~~---~~-~~~~~~~~~~~~~ll~~  339 (435)
                      .++|+|+|+|||||||+|+.+++..+. .+++++.|.++..+...... . ...+.+   .+ +.........+...+..
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~   80 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA   80 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence            368999999999999999999988753 26788899887654210000 0 000101   00 11222333344456667


Q ss_pred             HhcCCCeEEEeCCCc-CHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          340 ASRTPRNFIIDQTNV-FKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       340 al~~g~~vIlD~Tn~-~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ++++|.+||+|+++. ....|. .++.+.. .++.+|+|.++ +++.+|+.+|.
T Consensus        81 ~l~~G~~VIvD~~~~~~~~~r~-~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R~  132 (175)
T cd00227          81 MARAGANVIADDVFLGRAALQD-CWRSFVG-LDVLWVGVRCPGEVAEGRETARG  132 (175)
T ss_pred             HHhCCCcEEEeeeccCCHHHHH-HHHHhcC-CCEEEEEEECCHHHHHHHHHhcC
Confidence            789999999999988 455554 3554433 25778888876 89999999983

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.43  E-value=1.4e-13  Score=128.03  Aligned_cols=142  Identities=19%  Similarity=0.209  Sum_probs=86.0

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ...+.+++|.|.|||||||++..+...+....+++|+.|.++..+...-.+...............+......+++.++.
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~   91 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIE   91 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999998872234889999998654310000000000000122333355556678888899


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhc------CCCCcHHHHH
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEM------GKEVPADAVN  404 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~------~~~vp~~vi~  404 (435)
                      .+.++|+|.|+..++.-.++++.++..+ .+.++++.++ +..+.|+..|..++      ++.||.+.+.
T Consensus        92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~~~  161 (199)
T PF06414_consen   92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEKHD  161 (199)
T ss_dssp             CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCCCH
T ss_pred             cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHHHH
Confidence            9999999999988877776788888755 7777788776 88899999998777      7888854433

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.42  E-value=2.9e-12  Score=115.01  Aligned_cols=129  Identities=19%  Similarity=0.238  Sum_probs=87.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-----HhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-----QMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-----~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      |+|+|+|||||||+|+.++..++   ...++.|.+..     .+ ..|..  ......+... ..    +...+..++..
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~---~~~v~~D~~~~~~~~~~~-~~~~~--~~~~~~~~~~-~~----~~~~~~~~l~~   69 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG---AKFIEGDDLHPAANIEKM-SAGIP--LNDDDRWPWL-QN----LNDASTAAAAK   69 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC---CeEEeCccccChHHHHHH-HcCCC--CChhhHHHHH-HH----HHHHHHHHHhc
Confidence            57899999999999999999986   56788888632     11 12211  0111111111 11    11233334567


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                      |.++|||+|++.+..|.. ++   .++ .+.+++|.++ +++.+|++.|.   ++.++.+.++.++..++.|..
T Consensus        70 ~~~~Vi~~t~~~~~~r~~-~~---~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~~  136 (163)
T TIGR01313        70 NKVGIITCSALKRHYRDI-LR---EAEPNLHFIYLSGDKDVILERMKARK---GHFMKADMLESQFAALEEPLA  136 (163)
T ss_pred             CCCEEEEecccHHHHHHH-HH---hcCCCEEEEEEeCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCCC
Confidence            778899999988777764 33   333 6778888876 89999999994   345678889999988888864

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.37  E-value=1.9e-11  Score=113.44  Aligned_cols=129  Identities=15%  Similarity=0.182  Sum_probs=85.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc-CCC---ccCCCChHHH---------------HHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGL---LRKHNYSERF---------------QCL  325 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~-~G~---~~~~~~~~~~---------------~~~  325 (435)
                      ++.+|+++|+|||||||+|+.++..++-  ..++++|.+|+.++- .+.   +....| ..|               ...
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~--~~~~~~D~~r~~~r~~~~~~p~l~~s~~-~a~~~~~~~~~~~~~~~y~~q   78 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAI--DIVLSGDYLREFLRPYVDDEPVLAKSVY-DAWEFYGSMTDENIVKGYLDQ   78 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC--eEEehhHHHHHHHHHhcCCCCCcccccH-HHHHHcCCcchhHHHHHHHHH
Confidence            3579999999999999999999999763  357888999888752 111   000000 111               111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHhhhhcCCCCcH
Q 013831          326 MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKRFKEMGKEVPA  400 (435)
Q Consensus       326 ~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~  400 (435)
                      .+.....+..+++.++..|.+||+|++++.+..+...    .... .+.++++++++++++|...|....++..|.
T Consensus        79 ~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~----~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~  150 (197)
T PRK12339         79 ARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN----RTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPG  150 (197)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH----HhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcH
Confidence            1222334666777889999999999999999876531    1112 233345566688999999997655555664

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=99.32  E-value=7.2e-12  Score=115.19  Aligned_cols=141  Identities=18%  Similarity=0.189  Sum_probs=101.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCC---ccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~---~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      -||++||+|.|||||.|+.|...+..   |..+.+..|+.   ++   ..+...|...  ...+.++..++..+++-+.+
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des---lg---~~~ns~y~~s--~~EK~lRg~L~S~v~R~Lsk   73 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES---LG---IEKNSNYGDS--QAEKALRGKLRSAVDRSLSK   73 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh---cC---CCCccccccc--HHHHHHHHHHHHHHHhhccc
Confidence            58999999999999999998766542   32455555542   33   2122233221  11222334456677788899


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                      +..||+|+-|+.+..|.+++...+... .+++|++..| |.|.+.|..|...+...-++++++.+..+||.|.-
T Consensus        74 ~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEeP~s  147 (281)
T KOG3062|consen   74 GDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEEPNS  147 (281)
T ss_pred             CcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhCCCc
Confidence            999999999999999998877776655 7888998888 88999998885443334679999999999998853

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.30  E-value=2.4e-11  Score=107.82  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=75.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHhcCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      +|+|+|+|||||||+|+.+++.+.  +..++.++.|.+++.+.  +..   .+.+. ....+..    +...+...+++|
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~--~~~---~~~~~~~~~~~~~----~~~~a~~l~~~G   71 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLN--KDL---GFSREDREENIRR----IAEVAKLLADAG   71 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhh--hcc---CCCcchHHHHHHH----HHHHHHHHHhCC
Confidence            588999999999999999998763  22367788898887653  111   12111 1111111    112333445789


Q ss_pred             CeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 013831          345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~  389 (435)
                      .+||+|+|+..+..|..+ +.+.....+.+|+|.+| +++.+|+.+
T Consensus        72 ~~VIid~~~~~~~~R~~~-~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          72 LIVIAAFISPYREDREAA-RKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             CEEEEccCCCCHHHHHHH-HHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence            999999999999998864 44443337888999987 889888654

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=4.1e-11  Score=104.29  Aligned_cols=141  Identities=19%  Similarity=0.241  Sum_probs=103.9

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-----HHHhccCCCccCCCChHHHHHHHHHHHHHHHHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-----LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL  337 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-----r~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll  337 (435)
                      .+-.-+|++.|..||||||+++.+.+++.   +-.+..|++     +++|+ .|.+  -+..++|.++......     +
T Consensus         9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~---~~F~dgDd~Hp~~NveKM~-~Gip--LnD~DR~pWL~~i~~~-----~   77 (191)
T KOG3354|consen    9 GPFKYVIVVMGVSGSGKSTIGKALSEELG---LKFIDGDDLHPPANVEKMT-QGIP--LNDDDRWPWLKKIAVE-----L   77 (191)
T ss_pred             CCCceeEEEEecCCCChhhHHHHHHHHhC---CcccccccCCCHHHHHHHh-cCCC--CCcccccHHHHHHHHH-----H
Confidence            34345899999999999999999999987   444555543     67775 3432  1345677777664432     2


Q ss_pred             HHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-----C--cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831          338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-----R--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLAN  409 (435)
Q Consensus       338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-----~--~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~  409 (435)
                      ..++..|.-|||-.+.+.+.+|+-+-..+..+     .  .+.+|++... |++.+|+.+|.   +|..|.+.++.+++-
T Consensus        78 ~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~~lleSQf~~  154 (191)
T KOG3354|consen   78 RKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK---GHFMPADLLESQFAT  154 (191)
T ss_pred             HHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc---cccCCHHHHHHHHHh
Confidence            33345899999999999999998543333322     1  3567888887 99999999994   799999999999999


Q ss_pred             ccCCCCCC
Q 013831          410 YVLPVNKD  417 (435)
Q Consensus       410 fe~P~~~~  417 (435)
                      +|+|+..+
T Consensus       155 LE~p~~~e  162 (191)
T KOG3354|consen  155 LEAPDADE  162 (191)
T ss_pred             ccCCCCCc
Confidence            99998744

>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]

Probab=99.23  E-value=4e-12  Score=136.79  Aligned_cols=151  Identities=25%  Similarity=0.355  Sum_probs=112.1

Q ss_pred             cceeeEeec--ceeeCC-----EEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----C-------CCCCCCCCcc
Q 013831           74 YCWSGARAN--VGINGG-----KYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----P-------VGKLGETEQS  135 (435)
Q Consensus        74 ~~~~~~ra~--~gv~~G-----~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~----~-------~~~lG~d~~S  135 (435)
                      ...+++|.|  .||..|     +||||..|....|..     ..+..++||||+..+.    +       ...+|+|-+|
T Consensus       656 n~vss~rpniflgvaegsaqykkwy~el~id~~dpf~-----tae~thlrvgwass~gyap~pggge~wggngvgddl~s  730 (5019)
T KOG2243|consen  656 NDVSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPFL-----TAEATHLRVGWASSEGYAPCPGGGEEWGGNGVGDDLFS  730 (5019)
T ss_pred             hhhhhcCCceeEeeccchHHHHHHHHHHhhhcCCcce-----ecccceeeeeeeccCCCCCCCCCcccccCCCccchhhh
Confidence            356788888  466665     899999998754421     1246799999987542    2       4589999999


Q ss_pred             eEEecC----CceEeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCCccccccccccccC
Q 013831          136 FGFGGT----GKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQC  211 (435)
Q Consensus       136 ~gy~~~----G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~l~~~~~~~~g~~~  211 (435)
                      |||++-    |.+. +....+--.-....|||.|++|+-.   ..|+|..||+.+.-.|+...                .
T Consensus       731 ygfdglhlwsg~i~-r~vas~nqhllrsddvisccldl~~---psisfringqpvqgmfenfn----------------~  790 (5019)
T KOG2243|consen  731 YGFDGLHLWSGCIA-RAVASPNQHLLRSDDVISCCLDLGA---PSISFRINGQPVQGMFENFN----------------I  790 (5019)
T ss_pred             cCCCcchhhcccch-hhhcChhhhhhcccchhhhhhhcCC---CceEEEECCccchhHHhcCC----------------C
Confidence            999762    3321 1111222334788999999999987   68999999999877776321                2


Q ss_pred             CCceeeEEEEc-CeEEEEEccCC---CCCCCccccchhhhhc
Q 013831          212 ESAVFPHILLK-NVVVVMQFSVE---QGLIPVEGYKSWVSAL  249 (435)
Q Consensus       212 ~~~lfP~v~l~-~~~v~~nFG~~---~~~~p~~g~~p~~~~~  249 (435)
                      .+-|||.+|+. +..|++-.|.+   +++.||+||.|...+.
T Consensus       791 dglffpv~sfsagikvrfllggrhgefkflpp~gyapcyea~  832 (5019)
T KOG2243|consen  791 DGLFFPVMSFSAGIKVRFLLGGRHGEFKFLPPPGYAPCYEAL  832 (5019)
T ss_pred             cceeeeeEeeccCeEEEEEecccccceeecCCCCCccHHHHh
Confidence            57899999998 89999999985   5788999999987654

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.20  E-value=2.6e-10  Score=104.16  Aligned_cols=117  Identities=25%  Similarity=0.313  Sum_probs=72.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR  342 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~  342 (435)
                      +|+|+|+|||||||+|+.+++.++   +.+||. |.+++++. .+.    ......+.+...    ....+..++..++.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~lr~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~   72 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLLRAEIK-SGS----ENGELIESMIKNGKIVPSEVTVKLLKNAIQ   72 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC---CeEEECChHHHHHHh-cCC----hHHHHHHHHHHCCCcCCHHHHHHHHHHHHh
Confidence            589999999999999999999987   778887 55565543 111    011111111100    00112233333332


Q ss_pred             --CCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhhh
Q 013831          343 --TPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                        .++.+|||....+..++..+.+.+... ..-.+++++.+ +++++|+..|..
T Consensus        73 ~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~  126 (183)
T TIGR01359        73 ADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ  126 (183)
T ss_pred             ccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence              267899999888887777544444332 22246788887 889999999853

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.20  E-value=2e-10  Score=105.39  Aligned_cols=114  Identities=19%  Similarity=0.157  Sum_probs=77.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al  341 (435)
                      .+.+|+|+|+|||||||+|+.+...+..  ..++.++.|.++..+.  +.   ..|... ....+..    +..+....+
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~--~~---~~~~~~~~~~~~~~----~~~~~~~~~   87 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN--KD---LGFSEEDRKENIRR----IGEVAKLFV   87 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc--cc---cCCCHHHHHHHHHH----HHHHHHHHH
Confidence            4689999999999999999999987532  2267888899887653  21   122221 1111111    122334456


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~  388 (435)
                      ++|.+||+|+++..+.+|..+...+... .+.+|+++++ +++.+|+.
T Consensus        88 ~~G~~VI~d~~~~~~~~r~~~~~~~~~~-~~~~v~l~~~~e~~~~R~~  134 (184)
T TIGR00455        88 RNGIIVITSFISPYRADRQMVRELIEKG-EFIEVFVDCPLEVCEQRDP  134 (184)
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHhCcCC-CeEEEEEeCCHHHHHHhCc
Confidence            8999999999999999887643333332 5778999987 88888854

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=99.19  E-value=2.4e-10  Score=112.87  Aligned_cols=154  Identities=14%  Similarity=0.176  Sum_probs=116.9

Q ss_pred             EEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCC
Q 013831           44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD  123 (435)
Q Consensus        44 v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~  123 (435)
                      ++|++--+...+.+|.+.+++++-     +..++.|.+..++..|.+||||+|....          ....+-||++...
T Consensus       535 fqlt~spsqrdmilsnecatlsgs-----sleyrtilgsiafskgvhywevtidrhd----------gnsdivigvaqpa  599 (699)
T KOG4367|consen  535 FQLTPSPSQRDMILSNECATLSGS-----SLEYRTILGSIAFSKGVHYWEVTIDRHD----------GNSDIVIGVAQPA  599 (699)
T ss_pred             eeccCCchhhceeeecccceeccc-----ccchheeeeecccccceeEEEEEEeccC----------CCCCceEEecchh
Confidence            344555566679999998887653     4789999999999999999999999642          2356789999854


Q ss_pred             C-CCCCCCCCCcceEEecCCc--eE-eCCCccc-CCCCCCCCCEEEEEEecCCCCceeEEEEeCcccee-ecccccCCCC
Q 013831          124 D-PVGKLGETEQSFGFGGTGK--FS-HGGNFLN-FGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSN  197 (435)
Q Consensus       124 ~-~~~~lG~d~~S~gy~~~G~--~~-~~~~~~~-yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg-~af~~~~~~~  197 (435)
                      - .+..+|-|.++|..-.+|.  ++ ||....+ .--..+.|-|||+.||++.   ++|.|+.|.+..+ +||.   ++ 
T Consensus       600 vnrnvmlgkdlhgwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdr---gtmeytvndrqddsmaft---nm-  672 (699)
T KOG4367|consen  600 VNRNVMLGKDLHGWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDR---GTMEYTVNDRQDDSMAFT---NM-  672 (699)
T ss_pred             hhhceeecccccceeEEEcCcceeEEeccccccccccccccccEEEEEEeccC---CceEEEeccccCCceeee---cc-
Confidence            2 2678999999999755554  43 4443322 2235789999999999998   8999999998654 5664   21 


Q ss_pred             CccccccccccccCCCceeeEEEEc-CeEEEEEccCC
Q 013831          198 GLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVE  233 (435)
Q Consensus       198 ~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~  233 (435)
                                    .+-|||++++. |..+.+.-|-.
T Consensus       673 --------------rglyypafsvnanssitvhtgls  695 (699)
T KOG4367|consen  673 --------------RGLYYPAFSVNANSSITVHTGLS  695 (699)
T ss_pred             --------------cceeeeeeEeccCceEEEecCCC
Confidence                          46799999998 89999988753

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.19  E-value=1.5e-10  Score=103.00  Aligned_cols=111  Identities=20%  Similarity=0.207  Sum_probs=72.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCCh--HHHHHHHHHHHHHHHHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYS--ERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      +.+|+|+|+|||||||+|+.+.+.+.  +...+.|..|.+|..+.  .   +..|.  .+++.+. +    +..+.....
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~--~---dl~fs~~dR~e~~r-r----~~~~A~ll~   71 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN--A---DLGFSKEDREENIR-R----IAEVAKLLA   71 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT--T---T--SSHHHHHHHHH-H----HHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC--C---CCCCCHHHHHHHHH-H----HHHHHHHHH
Confidence            57899999999999999999987653  23478899998876542  1   22232  2222222 2    223444556


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~  387 (435)
                      ++|..||++....+++.|...-+.+... ++..||+.+| ++|.+|.
T Consensus        72 ~~G~ivIva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   72 DQGIIVIVAFISPYREDREWARELIPNE-RFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             HTTSEEEEE----SHHHHHHHHHHHHTT-EEEEEEEES-HHHHHHHT
T ss_pred             hCCCeEEEeeccCchHHHHHHHHhCCcC-ceEEEEeCCCHHHHHHhC
Confidence            8999999999999999999644444432 6777899998 9999885

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.15  E-value=6e-10  Score=97.70  Aligned_cols=132  Identities=16%  Similarity=0.116  Sum_probs=95.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      +.+.||.|+.||||||+.......+.. ..+++++|+|-.+..  ..      .+. ...++ |.+.....+..+++.++
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~i~--p~------~p~-~~~i~-A~r~ai~~i~~~I~~~~   70 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQIS--PD------NPT-SAAIQ-AARVAIDRIARLIDLGR   70 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhhcC--CC------Cch-HHHHH-HHHHHHHHHHHHHHcCC
Confidence            578899999999999997776654432 478999999865532  11      111 11222 22333445667789999


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831          346 NFIIDQTNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLAN  409 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~  409 (435)
                      +++.+.|...++.++ .++.++..+   ...+++++..|-..+|.+.|...+||++|++++++-+.+
T Consensus        71 ~F~~ETtLS~~s~~~-~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~r  136 (187)
T COG4185          71 PFIAETTLSGPSILE-LIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRR  136 (187)
T ss_pred             CcceEEeeccchHHH-HHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence            999999988888777 477666533   233456677789999999999999999999999887654

>PRK14527 adenylate kinase; Provisional

Probab=99.12  E-value=8.9e-10  Score=101.72  Aligned_cols=140  Identities=24%  Similarity=0.315  Sum_probs=82.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a  340 (435)
                      ++++|+++|+|||||||+|+.+++.++   +.+++.+++.+.....+.    ........+...    ....+..++...
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~---~~~is~gd~~r~~~~~~~----~~~~~~~~~~~~g~~~p~~~~~~l~~~~   77 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELG---LKKLSTGDILRDHVARGT----ELGQRAKPIMEAGDLVPDELILALIRDE   77 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC---CCCCCccHHHHHHHhcCc----HHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            468999999999999999999999887   677888665443211111    011111111110    011122233333


Q ss_pred             hcC--CCeEEEeCCCcCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHhhhhcC-CCCcHHHHHHHHhccc
Q 013831          341 SRT--PRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRFKEMG-KEVPADAVNNMLANYV  411 (435)
Q Consensus       341 l~~--g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~~-ee~~~R~~~R~~~~~-~~vp~~vi~~m~~~fe  411 (435)
                      +.+  +..+|||...-+..++..+-..+...+ . ..+++++++ +++++|+..|....+ .+..++++.+..+.|.
T Consensus        78 l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~  154 (191)
T PRK14527         78 LAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYR  154 (191)
T ss_pred             HhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHH
Confidence            332  457999986666777664333444443 3 356788887 899999999853322 2334666666555543

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.10  E-value=1.3e-09  Score=98.12  Aligned_cols=126  Identities=13%  Similarity=0.164  Sum_probs=80.6

Q ss_pred             EccCCCChhHHHHHHHhhCCCccEEEeccHHHH-----HHhccCCCccCCCChH--HHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-----EQMKVPGLLRKHNYSE--RFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       272 ~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir-----~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      +|+|||||||+++.++..++   .+.|+.|.+.     .++ ..|.    .++.  .+....... ..   ....+...+
T Consensus         1 ~G~sGsGKSTla~~la~~l~---~~~~~~d~~~~~~~~~~~-~~g~----~~~~~~~~~~~~~~~-~~---~~~~~~~~~   68 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKM-ASGE----PLNDDDRKPWLQALN-DA---AFAMQRTNK   68 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC---CeEEeCccCCchhhhccc-cCCC----CCChhhHHHHHHHHH-HH---HHHHHHcCC
Confidence            59999999999999999986   5677777641     111 1232    1222  111111111 11   111122455


Q ss_pred             CeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCCCC
Q 013831          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKD  417 (435)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~~~  417 (435)
                      ..||+ .|++.+.+|..    ++... .+.+|+|.++ +++.+|+..|..   +.-+.+++..+++.+++|...+
T Consensus        69 ~~viv-~s~~~~~~r~~----~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~---~~a~~~vl~~Q~~~~ep~~~~e  135 (163)
T PRK11545         69 VSLIV-CSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFETLQEPGADE  135 (163)
T ss_pred             ceEEE-EecchHHHHHH----HHccCCCEEEEEEECCHHHHHHHHHhccC---CCCCHHHHHHHHHHcCCCCCCC
Confidence            56666 89997777653    33333 7889999987 899999999953   3357899999999999886533

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.09  E-value=1.7e-09  Score=93.82  Aligned_cols=127  Identities=19%  Similarity=0.229  Sum_probs=92.9

Q ss_pred             EccCCCChhHHHHHHHhhCCCccEEEeccHHH-----HHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831          272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-----LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (435)
Q Consensus       272 ~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-----r~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~  346 (435)
                      .|..||||||+++.++..+.   +..+..|++     +++|. .|.+-  +...+|-++....     ..+....+.+..
T Consensus         1 MGVsG~GKStvg~~lA~~lg---~~fidGDdlHp~aNi~KM~-~GiPL--~DdDR~pWL~~l~-----~~~~~~~~~~~~   69 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLG---AKFIDGDDLHPPANIEKMS-AGIPL--NDDDRWPWLEALG-----DAAASLAQKNKH   69 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcC---CceecccccCCHHHHHHHh-CCCCC--CcchhhHHHHHHH-----HHHHHhhcCCCc
Confidence            48999999999999999987   445555543     56775 45321  2345555554322     123333467777


Q ss_pred             EEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                      +||-.+-+.+++|+. ++...  ..+.+||+..+ +.+++|.+.|.   +|..|.+.++.+++.+|.|..
T Consensus        70 ~vi~CSALKr~YRD~-LR~~~--~~~~Fv~L~g~~~~i~~Rm~~R~---gHFM~~~ll~SQfa~LE~P~~  133 (161)
T COG3265          70 VVIACSALKRSYRDL-LREAN--PGLRFVYLDGDFDLILERMKARK---GHFMPASLLDSQFATLEEPGA  133 (161)
T ss_pred             eEEecHHHHHHHHHH-HhccC--CCeEEEEecCCHHHHHHHHHhcc---cCCCCHHHHHHHHHHhcCCCC
Confidence            888888899998886 33222  26899999886 89999999994   899999999999999999975

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.08  E-value=1.3e-09  Score=98.98  Aligned_cols=121  Identities=23%  Similarity=0.308  Sum_probs=75.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCcc---CCCCh---HHHHHHHHHHHHHHHHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR---KHNYS---ERFQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~---~~~~~---~~~~~~~~~~~~~~~~ll~~a  340 (435)
                      ++|+|-|.|.|||||+|+.|...++. .|++++.|.+++.|. .+...   ...+.   +............+...+...
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~-p~~~l~~D~f~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~   79 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPE-PWLHLSVDTFVDMMP-PGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAM   79 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS--EEEEEHHHHHHHS--GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcC-CeEEEecChHHhhcC-cccccCCccccccccCCchhHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999874 589999999988653 11100   00011   001122233333455566677


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHH-HHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKL-RLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~-~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ++.|.+||+|.....+..-...+ +.+..+ ++.+|-+.+| +++.+|...|
T Consensus        80 a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~-~vl~VgV~Cpleil~~RE~~R  130 (174)
T PF07931_consen   80 ARAGNNVIVDDVFLGPRWLQDCLRRLLAGL-PVLFVGVRCPLEILERRERAR  130 (174)
T ss_dssp             HHTT-EEEEEE--TTTHHHHHHHHHHHTTS--EEEEEEE--HHHHHHHHHHH
T ss_pred             HhCCCCEEEecCccCcHHHHHHHHHHhCCC-ceEEEEEECCHHHHHHHHHhc
Confidence            79999999999888776522334 445544 6777666666 8999999999

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK14531 adenylate kinase; Provisional

Probab=99.07  E-value=2.2e-09  Score=98.50  Aligned_cols=132  Identities=20%  Similarity=0.293  Sum_probs=77.2

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR  342 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~  342 (435)
                      -|+++|+|||||||+++.+++.++   +.+||. |.+|.++. .+.    ........++..    ....+..++...+.
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd~lr~~~~-~~~----~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~   75 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGDLLRSEVA-AGS----ALGQEAEAVMNRGELVSDALVLAIVESQLK   75 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCeEecccHHHHHHh-cCC----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            488899999999999999999987   667887 55555542 111    011110111000    00111122222222


Q ss_pred             --CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcc
Q 013831          343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANY  410 (435)
Q Consensus       343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~f  410 (435)
                        .+..+|||....+..++..+-..+...+ .+ .+++++++ +++.+|+..|.+   .+-.++++.+-.+.|
T Consensus        76 ~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r---~dD~~e~i~~Rl~~y  145 (183)
T PRK14531         76 ALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR---ADDNEAVIRNRLEVY  145 (183)
T ss_pred             hccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC---CCCCHHHHHHHHHHH
Confidence              3567999999888887775443444443 33 46788887 889999998842   233455554444443

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.06  E-value=3.5e-09  Score=96.69  Aligned_cols=133  Identities=15%  Similarity=0.196  Sum_probs=84.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH-----HHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-----EQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir-----~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~a  340 (435)
                      .++++++|++||||||+++.++..+.   ...++.|.+.     +++. .|..........|-..+.   .....++   
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~---~~~i~gd~~~~~~~~r~~~-~g~~~~~~~~~~~~~~~~---~~~~~~~---   72 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFS---AKFIDGDDLHPAKNIDKMS-QGIPLTDEDRLPWLERLN---DASYSLY---   72 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC---CEEECCcccCCHhHHHHHh-cCCCCCcccchHHHHHHH---HHHHHHH---
Confidence            46899999999999999999998876   3567766531     1221 222100000001211111   1111121   


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCCC
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNK  416 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~~  416 (435)
                      ......+|+ +|++.+..|...    .+.. .+.+|+|+++ +++++|+.+|.   ++..+.+++..+++.+++|...
T Consensus        73 ~~~~~g~iv-~s~~~~~~R~~~----r~~~~~~~~v~l~a~~~~l~~Rl~~R~---~~~~~~~vl~~Q~~~~e~~~~~  142 (176)
T PRK09825         73 KKNETGFIV-CSSLKKQYRDIL----RKSSPNVHFLWLDGDYETILARMQRRA---GHFMPPDLLQSQFDALERPCAD  142 (176)
T ss_pred             hcCCCEEEE-EEecCHHHHHHH----HhhCCCEEEEEEeCCHHHHHHHHhccc---CCCCCHHHHHHHHHHcCCCCCC
Confidence            112334455 888988777742    3333 6889999987 89999999994   4668999999999999988653

>PRK14532 adenylate kinase; Provisional

Probab=99.05  E-value=3e-09  Score=97.80  Aligned_cols=114  Identities=25%  Similarity=0.320  Sum_probs=71.2

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHH--------HHHHHHHHHHHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSR  339 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~  339 (435)
                      |+|+|+|||||||+|+++++.++   +.+|++|+++++ +. .|..    .......+.        +.....+...+. 
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~-~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-   73 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIA-SGSE----LGQRVKGIMDRGELVSDEIVIALIEERLP-   73 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHH-cCCH----HHHHHHHHHHCCCccCHHHHHHHHHHHHh-
Confidence            78899999999999999999987   788898655443 32 1210    000000100        111111222221 


Q ss_pred             HhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhh
Q 013831          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ....+..+|||...-+..++..+.+.+...+ .. .+++|+.| +++.+|+..|.
T Consensus        74 ~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~  128 (188)
T PRK14532         74 EAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF  128 (188)
T ss_pred             CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence            1235778999998888888776444554443 33 57788887 78999999884

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.03  E-value=2.9e-09  Score=96.81  Aligned_cols=111  Identities=18%  Similarity=0.254  Sum_probs=71.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ..++|+|+|+|||||||+|+.++..+..  ..+..++.|.++..+. .+.    .+.. ..+.......    .+.....
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~-~~~----~~~~~~r~~~~~~~~----~~a~~~~   73 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS-KGL----GFSKEDRDTNIRRIG----FVANLLT   73 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh-cCC----CCChhhHHHHHHHHH----HHHHHHH
Confidence            4689999999999999999999887632  2366789998876653 121    1111 1111111111    1222234


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~  387 (435)
                      ..|.+||+|+++.....|+. ++...  ..+.+|+++++ +++.+|+
T Consensus        74 ~~g~~vi~~~~~~~~~~~~~-l~~~~--~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         74 RHGVIVLVSAISPYRETREE-VRANI--GNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             hCCCEEEEecCCCCHHHHHH-HHhhc--CCeEEEEEcCCHHHHHHhC
Confidence            67999999999887766664 32222  25778999987 8888885

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=99.01  E-value=6.6e-09  Score=106.70  Aligned_cols=125  Identities=10%  Similarity=0.122  Sum_probs=86.1

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc--CCCccCCCC---hHHH----------------
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV--PGLLRKHNY---SERF----------------  322 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~--~G~~~~~~~---~~~~----------------  322 (435)
                      +.+.+|+++|+||+||||+|.+++..++-  ..+|++|.+|+.|+-  ........+   -..|                
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~--~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~  330 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGI--TRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTR  330 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCC--cEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccch
Confidence            35899999999999999999999999873  237899999886641  111000000   0011                


Q ss_pred             ----HHHHHHHHHH---HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-c-E-EEEEECChHHHHHHHHHhhh
Q 013831          323 ----QCLMGRANAI---FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-K-I-AVVVFPKPEDLKIRSVKRFK  392 (435)
Q Consensus       323 ----~~~~~~~~~~---~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~-~vv~l~~~ee~~~R~~~R~~  392 (435)
                          .-..++|...   +..+++++++.|.+||||..|+.+.....    ....+ . + .+++|++.+++++|...|.+
T Consensus       331 ~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~----~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~  406 (475)
T PRK12337        331 AEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH----PYQAGALVVPMLVTLPDEALHRRRFELRDR  406 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH----HHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence                1122344444   77889999999999999999999987653    11222 2 2 34677878999999999976


Q ss_pred             hc
Q 013831          393 EM  394 (435)
Q Consensus       393 ~~  394 (435)
                      ..
T Consensus       407 ~~  408 (475)
T PRK12337        407 ET  408 (475)
T ss_pred             hc
Confidence            43

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.98  E-value=5e-09  Score=111.90  Aligned_cols=115  Identities=16%  Similarity=0.209  Sum_probs=82.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC---ccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~---~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~a  340 (435)
                      ...+|+|+|+|||||||+|+.+++.+..   ..+..++.|.+|..|.  |.   ..|... .+.....+    ..+....
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~--ge---~~f~~~er~~~~~~l----~~~a~~v  461 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS--SE---LGFSKEDRDLNILRI----GFVASEI  461 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc--CC---CCCCHHHHHHHHHHH----HHHHHHH
Confidence            4679999999999999999999988752   1257889999877653  32   234332 12222211    1123344


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~  388 (435)
                      ++.|..||+|.|+.....|....+.++..+.+.+|+|+++ +++.+|+.
T Consensus       462 ~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        462 TKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             HhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc
Confidence            6889999999999999999987777766555677899987 88988863

>PLN02200 adenylate kinase family protein

Probab=98.97  E-value=1.3e-08  Score=97.09  Aligned_cols=119  Identities=18%  Similarity=0.229  Sum_probs=69.9

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH-HHHHHhccCCCccCCCChHHHHHHH--------HHHHHH
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN-LILEQMKVPGLLRKHNYSERFQCLM--------GRANAI  332 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D-~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~  332 (435)
                      ..+.+.+|+++|+|||||||+|+++++.++   +.+|+.+ .+|+.+.. ..    ..........        +.....
T Consensus        39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i~~-~s----~~~~~i~~~~~~G~~vp~e~~~~~  110 (234)
T PLN02200         39 KEKTPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREIAS-NS----EHGAMILNTIKEGKIVPSEVTVKL  110 (234)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHHhc-cC----hhHHHHHHHHHcCCCCcHHHHHHH
Confidence            345578999999999999999999999887   6778884 45554421 10    0000000000        111111


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +...+..  ..+..+|||....+..++.. +..+.+...-.+++++++ +++++|+..|.
T Consensus       111 l~~~l~~--~~~~~~ILDG~Prt~~q~~~-l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~  167 (234)
T PLN02200        111 IQKEMES--SDNNKFLIDGFPRTEENRIA-FERIIGAEPNVVLFFDCPEEEMVKRVLNRN  167 (234)
T ss_pred             HHHHHhc--CCCCeEEecCCcccHHHHHH-HHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence            2222211  23467999997666555543 333333223356778876 88999999884

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.97  E-value=1.3e-08  Score=93.01  Aligned_cols=115  Identities=24%  Similarity=0.336  Sum_probs=69.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHH--------HHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIFDV  335 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~  335 (435)
                      ++.+|+++|+|||||||+|+.+++.++   +.+++++++.++ +. .+..    .........        ......+..
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~   73 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAEVA-SGSE----RGKQLQAIMESGDLVPLDTVLDLLKD   73 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHh-cCCH----HHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence            468999999999999999999999886   667888665433 21 1110    000000000        011122222


Q ss_pred             HHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhh
Q 013831          336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      .+..++..+..||+|...-+..+..    .+.. .. ...+++++++ +.+.+|+..|.
T Consensus        74 ~~~~~~~~~~~~i~dg~~~~~~q~~----~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~  128 (188)
T TIGR01360        74 AMVAALGTSKGFLIDGYPREVKQGE----EFERRIGPPTLVLYFDCSEDTMVKRLLKRA  128 (188)
T ss_pred             HHHcccCcCCeEEEeCCCCCHHHHH----HHHHcCCCCCEEEEEECCHHHHHHHHHccc
Confidence            3333456788999999754433222    2322 22 3457788887 88999999885

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.96  E-value=1.3e-08  Score=91.00  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=78.3

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCCh--HHHHHHHHHHHHHHHHHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYS--ERFQCLMGRANAIFDVLLS  338 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~ll~  338 (435)
                      .+.+.+|++.||+||||||+|..+.+.+.  +....+|.-|.+|.-+.     ++..|.  ++.+.+...+     ....
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-----~dLgFs~edR~eniRRva-----evAk   89 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-----RDLGFSREDRIENIRRVA-----EVAK   89 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-----CCCCCChHHHHHHHHHHH-----HHHH
Confidence            34568999999999999999999987754  23467899999886543     222332  2223222222     1233


Q ss_pred             HHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831          339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (435)
Q Consensus       339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~  387 (435)
                      ...++|-.||+-....+++.|+..-+.+.. +++.-||+++| ++|.+|.
T Consensus        90 ll~daG~iviva~ISP~r~~R~~aR~~~~~-~~FiEVyV~~pl~vce~RD  138 (197)
T COG0529          90 LLADAGLIVIVAFISPYREDRQMARELLGE-GEFIEVYVDTPLEVCERRD  138 (197)
T ss_pred             HHHHCCeEEEEEeeCccHHHHHHHHHHhCc-CceEEEEeCCCHHHHHhcC
Confidence            345889999999988888888864333333 35666899998 9999885

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.95  E-value=7.5e-09  Score=112.50  Aligned_cols=113  Identities=16%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al  341 (435)
                      .+.+|+|+|+|||||||+|+.+++.+.  +..++.|+.|.+|..+.  +.   ..|.+. ....++.+    ..+....+
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~--~~---~~~~~~~r~~~~~~l----~~~a~~~~  529 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN--RD---LGFSDADRVENIRRV----AEVARLMA  529 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC--CC---CCCCHHHHHHHHHHH----HHHHHHHH
Confidence            478999999999999999999988752  23478899999886542  21   123322 12222221    12333445


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~  387 (435)
                      ++|.+||+|+++..+..|.. ++.+.....+.+|+|+++ +++++|+
T Consensus       530 ~~G~~Vivda~~~~~~~R~~-~r~l~~~~~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        530 DAGLIVLVSFISPFREEREL-ARALHGEGEFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             hCCCEEEEECCCCCHHHHHH-HHHhcccCCeEEEEECCCHHHHHhhC
Confidence            88999999999999999875 443332225788999987 8888885

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=98.94  E-value=1.6e-09  Score=97.77  Aligned_cols=143  Identities=15%  Similarity=0.278  Sum_probs=92.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCc---cEEEeccHHHH-HHhccCCCccCCCCh---HHHHHHHHHHHHHHHH----
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEK---RYILLGTNLIL-EQMKVPGLLRKHNYS---ERFQCLMGRANAIFDV----  335 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~---~~~~ls~D~ir-~~~~~~G~~~~~~~~---~~~~~~~~~~~~~~~~----  335 (435)
                      .++.++|+|+||||||.+.+...+...   ..++++.|+++ ++.. ..   +..+.   .+++..++.+-....+    
T Consensus         2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTp-Sa---D~a~keqRgr~~~~iEk~ISaiqedtdw   77 (291)
T KOG4622|consen    2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATP-SA---DKAAKEQRGRFECHIEKCISAIQEDTDW   77 (291)
T ss_pred             ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCc-ch---hhhHHHHhchHHHHHHHHHHHHhcccCC
Confidence            367899999999999999987665432   24566777765 2211 11   11121   1223333322111000    


Q ss_pred             --HHHHHh-----cC-CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHH
Q 013831          336 --LLSRAS-----RT-PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNN  405 (435)
Q Consensus       336 --ll~~al-----~~-g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~  405 (435)
                        .+.+..     .. ...+++|+.++.+++|.++.+.++..+ .+-+||+.+. .+++++|..|.  +...++.+++++
T Consensus        78 ppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rs--da~k~~~dtiRk  155 (291)
T KOG4622|consen   78 PPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRS--DAEKQKNDTIRK  155 (291)
T ss_pred             CchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccc--cchhCccHHHHH
Confidence              000111     12 347888999999999998666666666 5677888775 89999999994  345789999999


Q ss_pred             HHhcccCCCC
Q 013831          406 MLANYVLPVN  415 (435)
Q Consensus       406 m~~~fe~P~~  415 (435)
                      |.+++|.|..
T Consensus       156 i~EklE~PD~  165 (291)
T KOG4622|consen  156 IFEKLEDPDE  165 (291)
T ss_pred             HHHhccCccH
Confidence            9999999964

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.93  E-value=2.8e-08  Score=91.39  Aligned_cols=116  Identities=22%  Similarity=0.220  Sum_probs=69.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc--
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR--  342 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~--  342 (435)
                      |+++|+|||||||+|+.+++.++   +.+|+.|++.++..-.+.    ............    -...+..++..++.  
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~   74 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEIASGT----ELGKKAKEYIDSGKLVPDEIVIKLLKERLKKP   74 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHHhcCC----hHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Confidence            78999999999999999999986   678888766443210110    001100011100    00122234444443  


Q ss_pred             -CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831          343 -TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       343 -~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                       .++.+|||....+..+...+.+.+.... ...+|++.++ +++++|+..|.
T Consensus        75 ~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~  126 (194)
T cd01428          75 DCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR  126 (194)
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence             3678999997666665554333333222 4456788887 88999999985

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.91  E-value=1.9e-08  Score=91.52  Aligned_cols=113  Identities=21%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      .+.+|+++|+|||||||+|+.++..+.  ...++.++.|.+++.+...|    +......+.    +. ....+.+...+
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~----~~~~~~~~~----~~-~~~~l~~~l~~   76 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYG----YDKQSRIEM----AL-KRAKLAKFLAD   76 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCC----CCHHHHHHH----HH-HHHHHHHHHHh
Confidence            467999999999999999999987764  12366778888876543222    111111111    11 11112222346


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~  389 (435)
                      .|.+||+|.++.....+.. .+...  ....+|+|+++ +++.+|+.+
T Consensus        77 ~g~~VI~~~~~~~~~~~~~-~~~~~--~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         77 QGMIVIVTTISMFDEIYAY-NRKHL--PNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             CCCEEEEEeCCcHHHHHHH-HHhhc--CCeEEEEEeCCHHHHHHhchh
Confidence            8899999999875444432 22111  13457888876 899999754

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.91  E-value=2.3e-08  Score=109.15  Aligned_cols=144  Identities=22%  Similarity=0.169  Sum_probs=90.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCcc-CCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ..+++|+|+||+||||+|++|++.+.  +-...+++.+.+++++.-.+... ........  ..+.+..+++.+....+.
T Consensus       215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~--e~~~~~~~~~d~~~~v~~  292 (664)
T PTZ00322        215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEV--EFRIAKAIAHDMTTFICK  292 (664)
T ss_pred             ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHH--HHHHHHHHHHHHHHHHhc
Confidence            56899999999999999999998863  11245666788887763111100 11111111  112233333334445566


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCCc---EEEEEEC---ChHHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRK---IAVVVFP---KPEDLKIRSVKRFKEMGKEVPADAVNNMLANYV  411 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~---~~vv~l~---~~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe  411 (435)
                      .|..+|+|+||.+...|..+++.+++.+.   ..+|+++   ++++.+++|..|........+++++.++++.++
T Consensus       293 ~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~  367 (664)
T PTZ00322        293 TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIE  367 (664)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            78899999999999999888888886431   2344443   346667888877554444456677777776665

>PRK01184 hypothetical protein; Provisional

Probab=98.87  E-value=5.7e-08  Score=88.92  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=64.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHHHhccCCCcc-CCCChHHHHHHHHH-HHHHHHHHHHHHh-
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLR-KHNYSERFQCLMGR-ANAIFDVLLSRAS-  341 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~~~~~~G~~~-~~~~~~~~~~~~~~-~~~~~~~ll~~al-  341 (435)
                      +.+|+|+|+|||||||+++ ++++++   +.++++ |.+|+.+...+... ...+...-....+. ....+..++...+ 
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~~~~~g---~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~   76 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-IAREMG---IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR   76 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHHcC---CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            3589999999999999987 677765   667776 55566542122110 00011100011111 0011111111112 


Q ss_pred             -cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                       ..+..||+|.+ ....+... ++.... ....+|++.++ +++.+|+..|.
T Consensus        77 ~~~~~~vvidg~-r~~~e~~~-~~~~~~-~~~~~i~v~~~~~~~~~Rl~~R~  125 (184)
T PRK01184         77 EKGDEVVVIDGV-RGDAEVEY-FRKEFP-EDFILIAIHAPPEVRFERLKKRG  125 (184)
T ss_pred             hcCCCcEEEeCC-CCHHHHHH-HHHhCC-cccEEEEEECCHHHHHHHHHHcC
Confidence             24678999997 44444432 222211 14567788887 88999999884

>PRK12338 hypothetical protein; Provisional

Probab=98.85  E-value=4.5e-08  Score=96.73  Aligned_cols=123  Identities=19%  Similarity=0.218  Sum_probs=79.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccC-CC-c----cCCCChHHHH---------------
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP-GL-L----RKHNYSERFQ---------------  323 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~-G~-~----~~~~~~~~~~---------------  323 (435)
                      .+.+|+++|+|||||||+|+.++..++-  ..++++|.+|+.++-. +. +    ....| ..|.               
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~--~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy-~a~~~l~~~~~~~~~~~~i   79 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNI--KHLIETDFIREVVRGIIGKEYAPALHKSSY-NAYTALRDKENFKNNEELI   79 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCC--eEEccChHHHHHHcCCCCcccCchhhcccH-HHHhhcCCcccccchHHHH
Confidence            3679999999999999999999999873  2345889998876521 11 0    00011 1121               


Q ss_pred             --HH---HHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhhh
Q 013831          324 --CL---MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFK  392 (435)
Q Consensus       324 --~~---~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-~ee~~~R~~~R~~  392 (435)
                        -.   .+.+...+..+++++++.|.++||+..++.+.....  ..+.....+.++++.+ .++.++|...|.+
T Consensus        80 ~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~--~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~  152 (319)
T PRK12338         80 CAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI--EQFEENASIHFFILSADEEVHKERFVKRAM  152 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh--hhhcccCceEEEEEECCHHHHHHHHHHhhh
Confidence              01   122333455677888899999999999999876553  1111212455444434 4889999999864

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.81  E-value=5.6e-08  Score=90.31  Aligned_cols=113  Identities=15%  Similarity=0.084  Sum_probs=74.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      .+.+|.|+|+|||||||+|+.+...+.  +...+.|+.|.++..+.  +.. .+..... ...+..    +..+....+.
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~--~~~-~~~~~~~-~~~~~~----l~~~a~~~~~   94 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC--SDL-GFSDADR-KENIRR----VGEVAKLMVD   94 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh--hcC-CcCcccH-HHHHHH----HHHHHHHHhh
Confidence            478999999999999999999988653  22367888888775532  110 1111111 111111    2223344567


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHH
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIR  386 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R  386 (435)
                      .|.+||.+..+..+++|..+...+... .+.+|+|+++ +++.+|
T Consensus        95 ~G~~VI~~~~~~~~~~R~~~r~~l~~~-~~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         95 AGLVVLTAFISPHRAERQMVRERLGEG-EFIEVFVDTPLAICEAR  138 (198)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHcccC-CEEEEEEcCCHHHHHhc
Confidence            899999888888889998755554432 4667899987 888888

>PRK00279 adk adenylate kinase; Reviewed

Probab=98.80  E-value=7.5e-08  Score=90.57  Aligned_cols=115  Identities=19%  Similarity=0.226  Sum_probs=66.4

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-  342 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~-  342 (435)
                      |+++|+|||||||+|+.+++.++   +.+|+.+++ ++.+. .+.    ........+...    -...+..++...+. 
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~~---~~~is~~dl~r~~~~-~~~----~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~   74 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYG---IPHISTGDMLRAAVK-AGT----ELGKEAKSYMDAGELVPDEIVIGLVKERLAQ   74 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CcEEECCccHHHHHh-ccc----hHHHHHHHHHHcCCcCCHHHHHHHHHHHHhc
Confidence            78899999999999999999987   678887554 44332 111    001100001000    00111223322222 


Q ss_pred             --CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhh
Q 013831          343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R~  391 (435)
                        .+..+|||...-+..+...+-+.+...+ .. .+|+|+++ +++++|+..|.
T Consensus        75 ~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~  128 (215)
T PRK00279         75 PDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR  128 (215)
T ss_pred             cCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence              2347999996555555443323334443 33 57788887 78999999984

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.78  E-value=1.4e-08  Score=105.21  Aligned_cols=159  Identities=21%  Similarity=0.194  Sum_probs=116.8

Q ss_pred             eEEeCcCCCCC-CeEEcCCCceEeecCCCCcccceeeEeecceee--CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 013831           43 RVVLNPADCDL-DFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN--GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT  119 (435)
Q Consensus        43 ~v~l~~~d~~~-~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~--~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~  119 (435)
                      ..+||+.+..- ..+++.|...+...........-+.+-|+..+.  .|.||||+.|.+.+          ..+.+.||.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g----------~~~~i~i~~  100 (469)
T KOG1477|consen   31 PCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYG----------IEGRIKIGF  100 (469)
T ss_pred             cceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhh----------hhhceEEEE
Confidence            67899877644 455666666554433333344556666666666  47999999999653          468899999


Q ss_pred             ecCCCC-CCCCCCCCcceEEec-CCceEeCC--CcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCC
Q 013831          120 SRGDDP-VGKLGETEQSFGFGG-TGKFSHGG--NFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAG  195 (435)
Q Consensus       120 s~~~~~-~~~lG~d~~S~gy~~-~G~~~~~~--~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~  195 (435)
                      ...... ....|+..+||+|++ +|.+.+.+  ....|+++|+.||.|||.++...   .+|+|++||..+|.+++.   
T Consensus       101 ~~~~~~~~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~---q~i~~t~~g~~~~~~~~~---  174 (469)
T KOG1477|consen  101 LIDSFSIIESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEIT---QEIFFTKNGTEVGEIIKP---  174 (469)
T ss_pred             EecccccccccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhh---heeeeccCcccccccccc---
Confidence            886554 678899999999986 46665523  34689999999999999999987   699999999999999862   


Q ss_pred             CCCccccccccccccCCCceeeE----EEE-c-CeEEEEEccC
Q 013831          196 SNGLGVVDSAVKERQCESAVFPH----ILL-K-NVVVVMQFSV  232 (435)
Q Consensus       196 ~~~l~~~~~~~~g~~~~~~lfP~----v~l-~-~~~v~~nFG~  232 (435)
                      +               ...++|.    +.+ . +..|.+|||.
T Consensus       175 ~---------------~~~~~~~~~n~~~~~s~~~~I~~~~g~  202 (469)
T KOG1477|consen  175 L---------------SPDLLEENGNLAWLFSPNEEVEVNFGL  202 (469)
T ss_pred             c---------------cccccccccceeeEeccCceeeeeecC
Confidence            1               2234444    444 3 8999999994

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=98.77  E-value=8.1e-09  Score=101.94  Aligned_cols=133  Identities=23%  Similarity=0.220  Sum_probs=94.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      .++|+|+|.|||||||+++.+...+.   +.+++.|.       .|.         |+.+...+        ..++..+.
T Consensus       269 ~eiV~~vgfp~sGks~f~a~~~~~~~---y~~vn~d~-------lg~---------~~~C~~~~--------~e~l~~~~  321 (422)
T KOG2134|consen  269 GEIVVAVGFPGSGKSTFAAKRVVPNG---YKIVNADT-------LGT---------PQNCLLAN--------AEALKHGK  321 (422)
T ss_pred             CcEEEEEecCCCCcchhhhhhcccCc---eeEeeccc-------CCC---------chhhHHHH--------HHHhhccc
Confidence            49999999999999999999988776   78887764       233         23333322        34568999


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcC--CCCcHHHHHHHHhcccCCCCCCCCCC
Q 013831          346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMG--KEVPADAVNNMLANYVLPVNKDTPGS  421 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~--~~vp~~vi~~m~~~fe~P~~~~~~~~  421 (435)
                      .||+|+||.+...|+.++....... .+..+.+.++ +..+.-+..|.....  ..+++-++..++.+|+.|++      
T Consensus       322 sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~~~~~~~dm~~~~~k~kf~~ptl------  395 (422)
T KOG2134|consen  322 SVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDSVKDSGSDMVFNSEKSKFQKPTL------  395 (422)
T ss_pred             EEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccccchhhccchhcccccceeehhhccccCchH------
Confidence            9999999999999998766555543 3444444555 444445555654332  24556777778899999997      


Q ss_pred             Ccccceeccc
Q 013831          422 DELFDQRRGS  431 (435)
Q Consensus       422 ~e~Fd~i~~~  431 (435)
                      +|+|..|.-.
T Consensus       396 ~egft~i~ev  405 (422)
T KOG2134|consen  396 DEGFTNILEV  405 (422)
T ss_pred             hhhhhhhhcc
Confidence            8888887654

>TIGR01351 adk adenylate kinases

Probab=98.76  E-value=8.9e-08  Score=89.74  Aligned_cols=114  Identities=22%  Similarity=0.280  Sum_probs=65.7

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-  342 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~-  342 (435)
                      |+++|+|||||||+|+.+++.++   +.+|+++++ |+.+. .+.    .....-..+.+.    -...+..++...+. 
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g---~~~is~gdllr~~~~-~~~----~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~   73 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG---LPHISTGDLLRAEIK-AGT----PLGKKAKEYMEKGELVPDEIVNQLVKERLTQ   73 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CCeeehhHHHHHhhc-ccc----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence            68899999999999999999887   678888554 44432 110    000000000000    00111223333322 


Q ss_pred             ---CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          343 ---TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       343 ---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                         .++.+|||...-+..+... +..........+|+|+.+ +.+++|+..|.
T Consensus        74 ~~~~~~~~ilDGfPrt~~Qa~~-l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~  125 (210)
T TIGR01351        74 NQDNENGFILDGFPRTLSQAEA-LDALLKEKIDAVIELDVPDEELVERLSGRR  125 (210)
T ss_pred             CcccCCcEEEeCCCCCHHHHHH-HHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence               2678999996556555543 332221123457788887 78999999884

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14530 adenylate kinase; Provisional

Probab=98.74  E-value=1.6e-07  Score=88.32  Aligned_cols=117  Identities=16%  Similarity=0.165  Sum_probs=66.2

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR  342 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~  342 (435)
                      .|+++|+|||||||+|+.+++.++   +.+|+++++.++ ...........+... ......    -......++..++.
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~~~~~~~~~~~~~~~~-~~~~~~g~~~~d~~~~~~l~~~l~   80 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRANKQMDISDMDTEYDTP-GEYMDAGELVPDAVVNEIVEEALS   80 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHhccCCcccccchHHHH-HHHHHcCCCCCHHHHHHHHHHHHh
Confidence            478899999999999999999987   667777665443 210000000001100 001100    01123344545555


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ....+|||....+..+.. .++.+.  ..-.+|+++.+ +.+++|+..|.
T Consensus        81 ~~~~~IldG~pr~~~q~~-~l~~~~--~~d~vI~Ld~~~~~l~~Rl~~R~  127 (215)
T PRK14530         81 DADGFVLDGYPRNLEQAE-YLESIT--DLDVVLYLDVSEEELVDRLTGRR  127 (215)
T ss_pred             cCCCEEEcCCCCCHHHHH-HHHHhc--CCCEEEEEeCCHHHHHHHHhCCC
Confidence            566899998444444333 233222  23347788887 88899998873

>PRK02496 adk adenylate kinase; Provisional

Probab=98.70  E-value=1.3e-07  Score=86.67  Aligned_cols=132  Identities=18%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHHHHHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSRA  340 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~a  340 (435)
                      +++.|+|||||||+|+.+++.++   +.+++.+++.++....+.    .....-....        +.....+...+.. 
T Consensus         4 i~i~G~pGsGKst~a~~la~~~~---~~~i~~~~~~~~~~~~~~----~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~-   75 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHLH---IPHISTGDILRQAIKEQT----PLGIKAQGYMDKGELVPDQLVLDLVQERLQQ-   75 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CcEEEhHHHHHHHHhccC----hhHHHHHHHHHCCCccCHHHHHHHHHHHHhC-
Confidence            78899999999999999999886   567777665443211111    0000000000        0111111122211 


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYV  411 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe  411 (435)
                      ......+|||..--+..+...+-+.+...+  ...+++++.+ +.+.+|+..|.+   .+-+++.+++..+.|.
T Consensus        76 ~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~---~dd~~~~~~~r~~~y~  146 (184)
T PRK02496         76 PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR---KDDTEEVIRRRLEVYR  146 (184)
T ss_pred             cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC---CCCCHHHHHHHHHHHH
Confidence            123457999985444444332222233332  3456788876 889999999832   2345667776666554

>PRK00625 shikimate kinase; Provisional

Probab=98.69  E-value=2e-07  Score=84.85  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      .|+|+|.|||||||+++.+++.+.   +..++.|.+.++
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D~~I~~   37 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS---LPFFDTDDLIVS   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCEEEhhHHHHH
Confidence            389999999999999999999886   667888876554

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.68  E-value=3.5e-07  Score=80.75  Aligned_cols=107  Identities=19%  Similarity=0.200  Sum_probs=59.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTPRNF  347 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~~g~~v  347 (435)
                      |+|+|+|||||||+|+.+++.++   +..++.|.++.+..  |..-...+.. .++......    .+++..++..+ ++
T Consensus         2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~e----~~~~~~~~~~~-~~   71 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLDELIEQRA--GMSIPEIFAEEGEEGFRELE----REVLLLLLTKE-NA   71 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHHc--CCCHHHHHHHHCHHHHHHHH----HHHHHHHhccC-Cc
Confidence            68999999999999999999986   66788888766542  2100000000 011111111    11333333444 44


Q ss_pred             EEeCCC---cCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          348 IIDQTN---VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       348 IlD~Tn---~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ||+...   .....    .+.+..  ...+||+.+| +++++|+.+|.
T Consensus        72 vi~~g~~~i~~~~~----~~~~~~--~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          72 VIATGGGAVLREEN----RRLLLE--NGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             EEECCCCccCcHHH----HHHHHc--CCeEEEEeCCHHHHHHHhccCC
Confidence            444322   22222    122222  3457788887 78889998874

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.68  E-value=1.5e-07  Score=85.20  Aligned_cols=134  Identities=16%  Similarity=0.236  Sum_probs=79.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHH------HH----
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGR------AN----  330 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~------~~----  330 (435)
                      ...+++++|++|+||||+++.|.+..+ . .++||...  +..+ .|..  .+|.|  ...++.++++      |.    
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l-~~SVS~TT--R~pR-~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gn   77 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK-L-RFSVSATT--RKPR-PGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGN   77 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC-e-EEEEEecc--CCCC-CCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCC
Confidence            367999999999999999999998873 2 44555443  2322 2321  12333  2334433322      00    


Q ss_pred             --HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831          331 --AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNM  406 (435)
Q Consensus       331 --~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m  406 (435)
                        -.....++.++..|++||+|-.--  ..++    .-..+.....||+.+|  +++.+|+..|    +.+..+.+-++|
T Consensus        78 yYGT~~~~ve~~~~~G~~vildId~q--Ga~q----vk~~~p~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl  147 (191)
T COG0194          78 YYGTSREPVEQALAEGKDVILDIDVQ--GALQ----VKKKMPNAVSIFILPPSLEELERRLKGR----GTDSEEVIARRL  147 (191)
T ss_pred             cccCcHHHHHHHHhcCCeEEEEEehH--HHHH----HHHhCCCeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHH
Confidence              022345667789999999998622  1111    1123445555566443  8999999999    666666666666


Q ss_pred             Hh-cccCC
Q 013831          407 LA-NYVLP  413 (435)
Q Consensus       407 ~~-~fe~P  413 (435)
                      .+ +-|+-
T Consensus       148 ~~a~~Ei~  155 (191)
T COG0194         148 ENAKKEIS  155 (191)
T ss_pred             HHHHHHHH
Confidence            43 34443

>PRK13946 shikimate kinase; Provisional

Probab=98.67  E-value=3.7e-07  Score=83.81  Aligned_cols=130  Identities=12%  Similarity=0.108  Sum_probs=77.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHH--HHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF--QCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ...|+|+|+|||||||+++.+++.++   +..+++|.++.++.  |..-. .+...+  ....    .....++..++..
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg---~~~id~D~~~~~~~--g~~~~-e~~~~~ge~~~~----~~e~~~l~~l~~~   79 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLG---LPFLDADTEIERAA--RMTIA-EIFAAYGEPEFR----DLERRVIARLLKG   79 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC---CCeECcCHHHHHHh--CCCHH-HHHHHHCHHHHH----HHHHHHHHHHHhc
Confidence            45799999999999999999999986   56788898766542  32100 000111  1111    1122344444556


Q ss_pred             CCeEEEeC--CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhc--CCCCcHHHHHHHHhccc
Q 013831          344 PRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEM--GKEVPADAVNNMLANYV  411 (435)
Q Consensus       344 g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~--~~~vp~~vi~~m~~~fe  411 (435)
                      +..||...  +.+.+..|+. +   ...  ..+|+|+.| +++.+|+..|....  ...-+.+.++++.++.+
T Consensus        80 ~~~Vi~~ggg~~~~~~~r~~-l---~~~--~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~  146 (184)
T PRK13946         80 GPLVLATGGGAFMNEETRAA-I---AEK--GISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERY  146 (184)
T ss_pred             CCeEEECCCCCcCCHHHHHH-H---HcC--CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHH
Confidence            65666653  5666665553 2   222  245788887 88999998873210  01234577777766554

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.67  E-value=1.2e-07  Score=87.26  Aligned_cols=128  Identities=16%  Similarity=0.331  Sum_probs=67.0

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHH-----------
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGR-----------  328 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~-----------  328 (435)
                      ..+.+|+|+|+|||||||+++.|.+.++.. +..++.-  -+..+ .|..  .+|.|  .+.++..++.           
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~T--TR~~r-~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g   77 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCT--TRAPR-PGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHD   77 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCcc--CCCCC-CCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECC
Confidence            357899999999999999999999887642 1122111  01111 1111  01211  1222222110           


Q ss_pred             -HHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECC--hHHHHHHHHHhhhhcCCCCcHHHH
Q 013831          329 -ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPK--PEDLKIRSVKRFKEMGKEVPADAV  403 (435)
Q Consensus       329 -~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~--~ee~~~R~~~R~~~~~~~vp~~vi  403 (435)
                       ..-.-.+.++.+++.|+.+|+|-. .  ..    ++.++. +. .+.+|++.+  .+++++|+.+|    +.. +++.+
T Consensus        78 ~~YGt~~~~i~~~~~~g~~~i~d~~-~--~g----~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~-s~e~i  145 (186)
T PRK14737         78 NYYGTPKAFIEDAFKEGRSAIMDID-V--QG----AKIIKEKFPERIVTIFIEPPSEEEWEERLIHR----GTD-SEESI  145 (186)
T ss_pred             eeecCcHHHHHHHHHcCCeEEEEcC-H--HH----HHHHHHhCCCCeEEEEEECCCHHHHHHHHHhc----CCC-CHHHH
Confidence             000112235556789999999974 2  11    222232 43 334556643  38899999888    433 44444


Q ss_pred             HHHH
Q 013831          404 NNML  407 (435)
Q Consensus       404 ~~m~  407 (435)
                      +++.
T Consensus       146 ~~Rl  149 (186)
T PRK14737        146 EKRI  149 (186)
T ss_pred             HHHH
Confidence            4443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.65  E-value=6.7e-08  Score=81.93  Aligned_cols=34  Identities=24%  Similarity=0.490  Sum_probs=29.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      +|+++|+|||||||+|+.|++.++   +.+++.|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG---FPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC---CeEEEecceE
Confidence            689999999999999999999876   6677788853

...

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.62  E-value=2.7e-07  Score=83.07  Aligned_cols=39  Identities=21%  Similarity=0.358  Sum_probs=33.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +.+|+|+|+|||||||+|+.+++.++   +..++.|.++++.
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d~~~~~~   42 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTDHLIEAR   42 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence            56899999999999999999999986   5567888876653

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.61  E-value=6.3e-07  Score=87.87  Aligned_cols=125  Identities=18%  Similarity=0.218  Sum_probs=81.6

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccC-------CCcc-CCC-C-------hHHHHHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP-------GLLR-KHN-Y-------SERFQCLMG  327 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~-------G~~~-~~~-~-------~~~~~~~~~  327 (435)
                      +.+-+|+++|++||||||+|.+++..++..  .++++|.+|+.|+..       +..+ .|. +       .+.-..+..
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~--~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g  167 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIR--SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYG  167 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCC--EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhh
Confidence            357889999999999999999999998742  478999998776521       1100 000 0       000001222


Q ss_pred             HHH------HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCc-EE-EEEECChHHHHHHHHHhhhh
Q 013831          328 RAN------AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRK-IA-VVVFPKPEDLKIRSVKRFKE  393 (435)
Q Consensus       328 ~~~------~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~-~~-vv~l~~~ee~~~R~~~R~~~  393 (435)
                      ...      ..++..++.++++|.++||...|+.+..-+.   ....+.. +. ++++.+.+.+++|...|.+.
T Consensus       168 ~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~---~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~  238 (301)
T PRK04220        168 FERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKE---KYLENPNVFMFVLTLSDEEAHKARFYARARV  238 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHH---hhhcCCCEEEEEEEECCHHHHHHHHHHHHhh
Confidence            222      2367788899999999999999999975332   1223432 32 34446668899998888653

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.61  E-value=7e-07  Score=79.42  Aligned_cols=138  Identities=17%  Similarity=0.165  Sum_probs=88.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v  347 (435)
                      |++-++.+|+||||+|..|..-.+.  |-++-.|.|      .|.      .+  ...++.+   ++.+   +......|
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg~--wgHvQnDnI------~~k------~~--~~f~~~~---l~~L---~~~~~~vV   58 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFGE--WGHVQNDNI------TGK------RK--PKFIKAV---LELL---AKDTHPVV   58 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcCC--CCccccCCC------CCC------CH--HHHHHHH---HHHH---hhCCCCEE
Confidence            4677899999999999999998874  555655653      121      01  1222221   1111   12567789


Q ss_pred             EEeCCCcCHHHHHHHHHHHhcCC--------c---EEEEEECC-h-----HHHHHHHHHhhhhcCC-----CC-----cH
Q 013831          348 IIDQTNVFKSARKRKLRLFVNFR--------K---IAVVVFPK-P-----EDLKIRSVKRFKEMGK-----EV-----PA  400 (435)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~--------~---~~vv~l~~-~-----ee~~~R~~~R~~~~~~-----~v-----p~  400 (435)
                      |+|-.|....+|++++..+....        .   +++.|+.. +     +.+.+|..+|-.  .|     ..     -.
T Consensus        59 iaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGD--NHQTika~~~~~~~~~  136 (168)
T PF08303_consen   59 IADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGD--NHQTIKADSKDEKKVE  136 (168)
T ss_pred             EEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCc--CcceeecCCCCHHHHH
Confidence            99999999999999888776421        2   24445432 2     345667777721  11     01     14


Q ss_pred             HHHHHHHhcccCCCCCCCCCCCcccceeccc
Q 013831          401 DAVNNMLANYVLPVNKDTPGSDELFDQRRGS  431 (435)
Q Consensus       401 ~vi~~m~~~fe~P~~~~~~~~~e~Fd~i~~~  431 (435)
                      .+|+.+.++||+.....  .++..||.|+.+
T Consensus       137 ~Im~gFi~rfep~~~~~--~pD~~FD~vI~L  165 (168)
T PF08303_consen  137 GIMEGFIKRFEPVDPDR--EPDSGFDHVIDL  165 (168)
T ss_pred             HHHHHHHHhcCCCCCCC--CCccccCEeEeC
Confidence            68888899999876543  357899999876

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=98.61  E-value=8.3e-07  Score=80.02  Aligned_cols=130  Identities=23%  Similarity=0.270  Sum_probs=78.3

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-HhccCCCccCCCChHHHHHHHHHHH-------HHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-QMKVPGLLRKHNYSERFQCLMGRAN-------AIFDV  335 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-~~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~  335 (435)
                      ..+.||++.|.|||||-|...+++..++   |.+||..++.+ +..-.|.       +.+..+.+...       .....
T Consensus         6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~---ftHlSaGdLLR~E~~~~gs-------e~g~~I~~~i~~G~iVP~ei~~~   75 (195)
T KOG3079|consen    6 DKPPIIFVLGGPGSGKGTQCEKIVEKYG---FTHLSAGDLLRAEIASAGS-------ERGALIKEIIKNGDLVPVEITLS   75 (195)
T ss_pred             cCCCEEEEEcCCCCCcchHHHHHHHHcC---ceeecHHHHHHHHHccccC-------hHHHHHHHHHHcCCcCcHHHHHH
Confidence            4578999999999999999999999998   99999976644 3221121       22222222111       23344


Q ss_pred             HHHHHhcCCC---eEEEeCCCcCHHHHHHHHHHHhc-CC--cEEEEEECCh-HHHHHHHHHhhhhcCC-CCcHHHHHHHH
Q 013831          336 LLSRASRTPR---NFIIDQTNVFKSARKRKLRLFVN-FR--KIAVVVFPKP-EDLKIRSVKRFKEMGK-EVPADAVNNML  407 (435)
Q Consensus       336 ll~~al~~g~---~vIlD~Tn~~~~~R~~~~~~~~~-~~--~~~vv~l~~~-ee~~~R~~~R~~~~~~-~vp~~vi~~m~  407 (435)
                      +++.++.+..   .++||.---..++..    .|.. +.  .-.+++++++ +++++|+..|...+.+ +-..+.+++..
T Consensus        76 LL~~am~~~~~~~~fLIDGyPR~~~q~~----~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~  151 (195)
T KOG3079|consen   76 LLEEAMRSSGDSNGFLIDGYPRNVDQLV----EFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRL  151 (195)
T ss_pred             HHHHHHHhcCCCCeEEecCCCCChHHHH----HHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHH
Confidence            5555544322   299999433333322    2322 32  2345788998 8999999999654221 22345555443

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.59  E-value=3.3e-07  Score=82.37  Aligned_cols=146  Identities=16%  Similarity=0.182  Sum_probs=79.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc-cCCCccCCCChHHHHHH---HHHHHHHHHHHHHHHhcC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCL---MGRANAIFDVLLSRASRT  343 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~-~~G~~~~~~~~~~~~~~---~~~~~~~~~~ll~~al~~  343 (435)
                      +|+++|.|||||||+|+.+++.++   +.+++.|.+..++. ..|..     ...+...   .......+...+......
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg---~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~   73 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS---LKLISAGDIFRELAAKMGLD-----LIEFLNYAEENPEIDKKIDRRIHEIALK   73 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CceecHHHHHHHHHHHcCCC-----HHHHHHHHhcCcHHHHHHHHHHHHHHhc
Confidence            689999999999999999999876   66788876554431 12210     0111000   001111222233333335


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHh-------cccCCCC
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLA-------NYVLPVN  415 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~-------~fe~P~~  415 (435)
                      +.++|||..+..      ++  +..... .+|++.+| +.+.+|+.+|.   + .-.+++..++..       .+.... 
T Consensus        74 ~~~~Vi~g~~~~------~~--~~~~~d-~~v~v~a~~~~r~~R~~~R~---~-~s~~~a~~~~~~~d~~~~~~~~~~~-  139 (171)
T TIGR02173        74 EKNVVLESRLAG------WI--VREYAD-VKIWLKAPLEVRARRIAKRE---G-KSLTVARSETIEREESEKRRYLKFY-  139 (171)
T ss_pred             CCCEEEEecccc------ee--ecCCcC-EEEEEECCHHHHHHHHHHcc---C-CCHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            568888886431      11  112223 35677776 78889999883   2 122333332221       122111 


Q ss_pred             CCCCCCCcccceecccccCC
Q 013831          416 KDTPGSDELFDQRRGSAAFG  435 (435)
Q Consensus       416 ~~~~~~~e~Fd~i~~~~~~~  435 (435)
                      .-.......||-++.++.++
T Consensus       140 ~~~~~~~~~ydl~i~t~~~~  159 (171)
T TIGR02173       140 GIDIDDLSIYDLVINTSNWD  159 (171)
T ss_pred             CCCccccccccEEEECCCCC
Confidence            12234568899888888764

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PLN02674 adenylate kinase

Probab=98.57  E-value=1.4e-06  Score=83.47  Aligned_cols=117  Identities=17%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS  341 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al  341 (435)
                      .-|++.|+|||||||.|+.+++.++   +.+||+++++++ +. .+.    ........++..    -......++..++
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~---~~his~GdllR~~i~-~~s----~~g~~i~~~~~~G~lvpd~iv~~lv~~~l  103 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVA-AKT----PLGIKAKEAMDKGELVSDDLVVGIIDEAM  103 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHHHHHHh-ccC----hhhHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence            4478899999999999999999987   788888766443 32 121    111111111110    0011222333333


Q ss_pred             c---CCCeEEEeCCCcCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHhh
Q 013831          342 R---TPRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       342 ~---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      .   .+..+|||.---+..+-..+-..+...+ . -.+++++.+ +++++|+..|.
T Consensus       104 ~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~  159 (244)
T PLN02674        104 KKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW  159 (244)
T ss_pred             hCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence            2   3467999996555444443222333333 3 356788887 78999999883

>PRK14528 adenylate kinase; Provisional

Probab=98.56  E-value=1.2e-06  Score=80.56  Aligned_cols=136  Identities=20%  Similarity=0.189  Sum_probs=72.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH-HHhccCCCccCCCChHHHHHHHH--------HHHHHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLL  337 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir-~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~~ll  337 (435)
                      +-|++.|+|||||||+|+.+++.++   +.+++.+++. ..+. .+.    .....-.....        .....+...+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~-~~~----~~g~~~~~~~~~g~lvp~~~~~~~~~~~l   73 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVK-NQT----AMGIEAKRYMDAGDLVPDSVVIGIIKDRI   73 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhh-cCC----HHHHHHHHHHhCCCccCHHHHHHHHHHHH
Confidence            4588999999999999999998886   5567777664 4332 111    00000000000        0111122222


Q ss_pred             HHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhhhhcCC-CCcHHHHHHHHhccc
Q 013831          338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGK-EVPADAVNNMLANYV  411 (435)
Q Consensus       338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~~~~~~-~vp~~vi~~m~~~fe  411 (435)
                      ... .....+|||.---+..+-..+.+.+...+  .-.+|+++.+ +++.+|+..|....++ +-.++++.+-.+.|.
T Consensus        74 ~~~-~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~  150 (186)
T PRK14528         74 REA-DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYN  150 (186)
T ss_pred             hCc-CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHH
Confidence            111 22356999984333333232222333332  2356788887 8999999998543332 234566666555443

>PRK07261 topology modulation protein; Provisional

Probab=98.53  E-value=1.3e-07  Score=85.92  Aligned_cols=97  Identities=18%  Similarity=0.228  Sum_probs=57.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFI  348 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~vI  348 (435)
                      |+++|.|||||||+|+.+++.++   ...++.|.+.-.   .+ +..    ...+....        .+..++.++. +|
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~~~~~---~~-~~~----~~~~~~~~--------~~~~~~~~~~-wI   62 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHYN---CPVLHLDTLHFQ---PN-WQE----RDDDDMIA--------DISNFLLKHD-WI   62 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC---CCeEecCCEEec---cc-ccc----CCHHHHHH--------HHHHHHhCCC-EE
Confidence            78999999999999999998765   334555643210   11 111    00111211        2333445555 99


Q ss_pred             EeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          349 IDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       349 lD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +|+++....... .+   ..  --.+|+++.| ..|+.|+.+|.
T Consensus        63 idg~~~~~~~~~-~l---~~--ad~vI~Ld~p~~~~~~R~lkR~  100 (171)
T PRK07261         63 IDGNYSWCLYEE-RM---QE--ADQIIFLNFSRFNCLYRAFKRY  100 (171)
T ss_pred             EcCcchhhhHHH-HH---HH--CCEEEEEcCCHHHHHHHHHHHH
Confidence            999865422121 12   11  1246788887 88999998885

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.53  E-value=2.3e-06  Score=78.21  Aligned_cols=114  Identities=24%  Similarity=0.274  Sum_probs=64.7

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHH--------HHHHHHHHHHHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLLSRA  340 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~a  340 (435)
                      |++.|+|||||||+|++|++.++   ..+||++.+.+.-...+.    .....-...++        ....++...+..+
T Consensus         3 iiilG~pGaGK~T~A~~La~~~~---i~hlstgd~~r~~~~~~t----~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~   75 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKLG---LPHLDTGDILRAAIAERT----ELGEEIKKYIDKGELVPDEIVNGLVKERLDEA   75 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CcEEcHhHHhHhhhccCC----hHHHHHHHHHHcCCccchHHHHHHHHHHHHhh
Confidence            78899999999999999999987   789998776443111111    01111011111        1112333344333


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHH-HhcCC-c-EEEEEECCh-HHHHHHHHHhh
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRL-FVNFR-K-IAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~-~~~~~-~-~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      -... .+|+|.---+-. +.+.++. +..++ + -.++.++.+ +.+..|...|.
T Consensus        76 d~~~-~~I~dg~PR~~~-qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~  128 (178)
T COG0563          76 DCKA-GFILDGFPRTLC-QARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR  128 (178)
T ss_pred             cccC-eEEEeCCCCcHH-HHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence            1122 799999533333 3333443 33333 3 345677776 78889998883

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.53  E-value=9e-07  Score=80.56  Aligned_cols=127  Identities=13%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCcc-EEEeccHHHHHHhccCCCccCCCC--hHHHHHHHHHH-----------HHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKR-YILLGTNLILEQMKVPGLLRKHNY--SERFQCLMGRA-----------NAI  332 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~-~~~ls~D~ir~~~~~~G~~~~~~~--~~~~~~~~~~~-----------~~~  332 (435)
                      ++++++|+|||||||+++.++..++... ...+.++.-+. ....|.  .+.+  ...+.......           ..-
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   78 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRP-ASAGGE--NHIALSTEEFDHREDGGAFALSWQAHGLSYG   78 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccC-CCCCCc--cccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence            4789999999999999999988764221 11111111000 000110  0000  01111100000           000


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNM  406 (435)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m  406 (435)
                      ....+..++..|.+||+|..   ...+....+   .+....+|+++++ +++.+|+..|    +...++.+..++
T Consensus        79 ~~~~i~~~~~~g~~vv~~g~---~~~~~~~~~---~~~~~~~i~l~~~~~~~~~Rl~~R----~~~~~~~~~~rl  143 (179)
T TIGR02322        79 IPAEIDQWLEAGDVVVVNGS---RAVLPEARQ---RYPNLLVVNITASPDVLAQRLAAR----GRESREEIEERL  143 (179)
T ss_pred             ChHHHHHHHhcCCEEEEECC---HHHHHHHHH---HCCCcEEEEEECCHHHHHHHHHHc----CCCCHHHHHHHH
Confidence            01123334578899999986   222222111   1235677888876 8999999988    333444444454

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.52  E-value=1.9e-07  Score=81.64  Aligned_cols=142  Identities=13%  Similarity=0.087  Sum_probs=70.2

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v  347 (435)
                      +|+++|+|||||||+|+.+++.++   +..++.|.+..+..  +.      ...+..........+...+... ..+.++
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~---~~~~~~~~i~~e~~--~~------~~~~~~~~~~i~~~l~~~~~~~-~~~~~~   68 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG---LPYLDTGGIRTEEV--GK------LASEVAAIPEVRKALDERQREL-AKKPGI   68 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC---CceeccccCCHHHH--HH------HHHHhcccHhHHHHHHHHHHHH-hhCCCE
Confidence            588999999999999999999876   44566553211100  00      0000000011111222233222 334579


Q ss_pred             EEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCc-HHHHHHHHhcccCCCC--CCCCCCCc
Q 013831          348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVP-ADAVNNMLANYVLPVN--KDTPGSDE  423 (435)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp-~~vi~~m~~~fe~P~~--~~~~~~~e  423 (435)
                      |||......      + .+ . ....+|++.++ +...+|..+|.....+.++ +++...+..+- .+..  --.+-...
T Consensus        69 Vidg~~~~~------~-~~-~-~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~  138 (147)
T cd02020          69 VLEGRDIGT------V-VF-P-DADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERD-ERDSTRYVAPLKLA  138 (147)
T ss_pred             EEEeeeeee------E-Ec-C-CCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HHhhhcccccccCC
Confidence            999864311      1 11 1 12244677665 7888898886543333444 44444443321 1110  01112456


Q ss_pred             ccceeccc
Q 013831          424 LFDQRRGS  431 (435)
Q Consensus       424 ~Fd~i~~~  431 (435)
                      .||-++.+
T Consensus       139 ~~dl~i~~  146 (147)
T cd02020         139 EDAIVIDT  146 (147)
T ss_pred             CCcEEEeC
Confidence            66666554

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.52  E-value=7.9e-07  Score=81.70  Aligned_cols=113  Identities=14%  Similarity=0.217  Sum_probs=60.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCC-CC-hHHHHHHHHH---H-H--------HH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKH-NY-SERFQCLMGR---A-N--------AI  332 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~-~~-~~~~~~~~~~---~-~--------~~  332 (435)
                      ++++++|++||||||+++.++...+.  -+.++...+.+... .+. .++ .+ ...+....+.   + .        ..
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~   78 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPAS-AGS-ENHIALSEQEFFTRAGQNLFALSWHANGLYYGV   78 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccc-hhH-HhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence            58899999999999999999887642  12222111111000 000 001 01 1111111110   0 0        00


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHh
Q 013831          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .+ -++.+++.|.+||+|.+   ...+..   ..+.+. ...+|+++++ +++.+|+..|
T Consensus        79 ~~-~~~~~l~~g~~VI~~G~---~~~~~~---~~~~~~~~~~vi~l~~s~e~l~~RL~~R  131 (186)
T PRK10078         79 GI-EIDLWLHAGFDVLVNGS---RAHLPQ---ARARYQSALLPVCLQVSPEILRQRLENR  131 (186)
T ss_pred             cH-HHHHHHhCCCEEEEeCh---HHHHHH---HHHHcCCCEEEEEEeCCHHHHHHHHHHh
Confidence            11 24556788999999876   222222   122333 5677888887 8999999988

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.50  E-value=3e-06  Score=77.73  Aligned_cols=121  Identities=15%  Similarity=0.081  Sum_probs=61.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCc--cEEEecc-------HHHHHHhccCCCccCCCChHHHHHHHHHH--HHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGT-------NLILEQMKVPGLLRKHNYSERFQCLMGRA--NAIFDVL  336 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~-------D~ir~~~~~~G~~~~~~~~~~~~~~~~~~--~~~~~~l  336 (435)
                      +|++.|++||||||+++.|++.+...  .++.+..       +.+++.+. ...  ..........+.-.+  ...+...
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~r~~~~~~~   78 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLL-DPE--DEKMDPRAELLLFAADRAQHVEEV   78 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHh-ccC--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999876422  1222211       23333221 110  001111111111111  1122334


Q ss_pred             HHHHhcCCCeEEEeCCCcCHHH----H----HHHHHHH---h-cC-CcEEEEEECCh-HHHHHHHHHhh
Q 013831          337 LSRASRTPRNFIIDQTNVFKSA----R----KRKLRLF---V-NF-RKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~~----R----~~~~~~~---~-~~-~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +..++..|..||+|....+.-.    .    ..++..+   . .. ....++++.++ +++++|+.+|.
T Consensus        79 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  147 (200)
T cd01672          79 IKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARG  147 (200)
T ss_pred             HHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            4445678999999943221110    0    1112222   2 11 23457788876 89999999985

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK03839 putative kinase; Provisional

Probab=98.49  E-value=4e-07  Score=83.09  Aligned_cols=99  Identities=15%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v  347 (435)
                      .|+++|+|||||||+++.+++.++   +..++.|.+..+..+ +..    +....+.....    +...+... ..+.++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d~~~~~~~~-~~~----~~~~~~~~~~~----l~~~~~~~-~~~~~v   68 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG---YEYVDLTEFALKKGI-GEE----KDDEMEIDFDK----LAYFIEEE-FKEKNV   68 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEehhhhhhhcCC-ccc----CChhhhcCHHH----HHHHHHHh-ccCCCE
Confidence            488999999999999999999987   667788877654321 111    11111111111    11122111 235679


Q ss_pred             EEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      |+|..+.      .    +.  ..-.+|+++++ +++.+|+..|.
T Consensus        69 IidG~~~------~----l~--~~~~vi~L~~~~~~~~~Rl~~R~  101 (180)
T PRK03839         69 VLDGHLS------H----LL--PVDYVIVLRAHPKIIKERLKERG  101 (180)
T ss_pred             EEEeccc------c----cc--CCCEEEEEECCHHHHHHHHHHcC
Confidence            9998421      0    11  11235678775 89999998873

>PRK13808 adenylate kinase; Provisional

Probab=98.47  E-value=2.5e-06  Score=85.02  Aligned_cols=113  Identities=21%  Similarity=0.252  Sum_probs=63.0

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHH--------HHHHHHHHHHHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSR  339 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~  339 (435)
                      |||.|+|||||||+++.|++.++   +.+|+.+++++. +. .+.    ........++        +....++...+..
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg---l~~is~gdlLR~~i~-~~s----~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~   74 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG---IVQLSTGDMLRAAVA-AGT----PVGLKAKDIMASGGLVPDEVVVGIISDRIEQ   74 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceecccHHHHHHhh-cCC----hhhHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            67899999999999999999987   678888766543 21 111    0000000110        1111112222211


Q ss_pred             HhcCCCeEEEeCCCcCHHHHHHHHH-HHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          340 ASRTPRNFIIDQTNVFKSARKRKLR-LFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      . .....+|||.---+..+-. .+. ++...+  .-.+|+|+.+ +++++|+..|.
T Consensus        75 ~-~~~~G~ILDGFPRt~~QA~-~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~  128 (333)
T PRK13808         75 P-DAANGFILDGFPRTVPQAE-ALDALLKDKQLKLDAVVELRVNEGALLARVETRV  128 (333)
T ss_pred             c-cccCCEEEeCCCCCHHHHH-HHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCc
Confidence            1 2235699998433333333 333 333322  3346788887 89999999873

>PRK06217 hypothetical protein; Validated

Probab=98.47  E-value=1.8e-07  Score=85.67  Aligned_cols=103  Identities=17%  Similarity=0.053  Sum_probs=60.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~  346 (435)
                      .-|+++|.|||||||+|++|++.++   +.+++.|.+...   .+.. ........+...        .++...+..+..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D~~~~~---~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~   66 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLD---IPHLDTDDYFWL---PTDP-PFTTKRPPEERL--------RLLLEDLRPREG   66 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CcEEEcCceeec---cCCC-CccccCCHHHHH--------HHHHHHHhcCCC
Confidence            3489999999999999999999986   557777876432   1110 000000111111        122223345678


Q ss_pred             EEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +|||.... . .+.    .+... .-.+|+++.| +++++|+..|.
T Consensus        67 ~vi~G~~~-~-~~~----~~~~~-~d~~i~Ld~~~~~~~~Rl~~R~  105 (183)
T PRK06217         67 WVLSGSAL-G-WGD----PLEPL-FDLVVFLTIPPELRLERLRLRE  105 (183)
T ss_pred             EEEEccHH-H-HHH----HHHhh-CCEEEEEECCHHHHHHHHHcCc
Confidence            99997532 1 222    12221 1246788887 89999999985

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.47  E-value=2.4e-06  Score=75.54  Aligned_cols=142  Identities=19%  Similarity=0.302  Sum_probs=80.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc-CCCc-cC-CCC---hHHHHHHHHHHHHHHHHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLL-RK-HNY---SERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~-~G~~-~~-~~~---~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      +|.+.|+|||||||+|+.+++.++   +-.+|+-.++++|-. .|.. .+ ..+   .+.+++.+++       .....+
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g---l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~-------rq~e~a   71 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG---LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDR-------RQKELA   71 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC---CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHH-------HHHHHH
Confidence            577899999999999999999988   566777666665531 2220 00 001   2233333332       222223


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHH-------hcccCC
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNML-------ANYVLP  413 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~-------~~fe~P  413 (435)
                      + ..++||+.- +.     -|+  ++.+..+. ||+.+| ++..+|.++|.   +.++ +++...+.       ++|. -
T Consensus        72 ~-~~nvVlegr-LA-----~Wi--~k~~adlk-I~L~Apl~vRa~Ria~RE---gi~~-~~a~~~~~~RE~se~kRY~-~  136 (179)
T COG1102          72 K-EGNVVLEGR-LA-----GWI--VREYADLK-IWLKAPLEVRAERIAKRE---GIDV-DEALAETVEREESEKKRYK-K  136 (179)
T ss_pred             H-cCCeEEhhh-hH-----HHH--hccccceE-EEEeCcHHHHHHHHHHhc---CCCH-HHHHHHHHHHHHHHHHHHH-H
Confidence            4 778999874 31     122  12333455 577777 89999999994   3333 22222221       1221 1


Q ss_pred             CCCCCCCCCcccceecccccC
Q 013831          414 VNKDTPGSDELFDQRRGSAAF  434 (435)
Q Consensus       414 ~~~~~~~~~e~Fd~i~~~~~~  434 (435)
                      ..+-..+....||-|+.++.+
T Consensus       137 ~YgIDidDlSiyDLVinTs~~  157 (179)
T COG1102         137 IYGIDIDDLSIYDLVINTSKW  157 (179)
T ss_pred             HhCCCCccceeeEEEEecccC
Confidence            122233447788888887765

>PRK04040 adenylate kinase; Provisional

Probab=98.46  E-value=1.5e-06  Score=80.16  Aligned_cols=38  Identities=24%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILE  305 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir~  305 (435)
                      +.+|+++|.|||||||+++.+++.++ +  +..++.++++.
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~--~~~~~~g~~~~   40 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKED--YKIVNFGDVML   40 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccC--CeEEecchHHH
Confidence            57899999999999999999999985 3  55666666643

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.45  E-value=1.1e-06  Score=79.95  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=23.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ++|+++|++||||||+++.++...+
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCc
Confidence            6899999999999999999998765

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.45  E-value=9e-07  Score=82.79  Aligned_cols=30  Identities=10%  Similarity=0.106  Sum_probs=25.3

Q ss_pred             CCCCcceEEEEEccCCCChhHHHHHHHhhC
Q 013831          261 CNMKDCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       261 ~~~~~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +.+..+.+|+++|+|||||||+++.|.+..
T Consensus         8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738          8 NKPAKPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            445667899999999999999999997643

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.44  E-value=3.3e-06  Score=76.05  Aligned_cols=106  Identities=19%  Similarity=0.209  Sum_probs=61.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCCh-HHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRASRTPRN  346 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~ll~~al~~g~~  346 (435)
                      =|+|+|+|||||||+.+.+++.+.   +.-+.+|.++++-  .|-.-..-|. .-++...+.    -.+.+...+..+ +
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~Ie~~--~g~sI~eIF~~~GE~~FR~~----E~~vl~~l~~~~-~   73 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEIEKR--TGMSIAEIFEEEGEEGFRRL----ETEVLKELLEED-N   73 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHHHHH--HCcCHHHHHHHHhHHHHHHH----HHHHHHHHhhcC-C
Confidence            378999999999999999999987   5567889876652  2210000011 111111111    112344444555 4


Q ss_pred             EEEeC---CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 013831          347 FIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       347 vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~  389 (435)
                      .||-.   +-.+++.|.    .+++.  -.+||++++ +.+.+|++.
T Consensus        74 ~ViaTGGG~v~~~enr~----~l~~~--g~vv~L~~~~e~l~~Rl~~  114 (172)
T COG0703          74 AVIATGGGAVLSEENRN----LLKKR--GIVVYLDAPFETLYERLQR  114 (172)
T ss_pred             eEEECCCccccCHHHHH----HHHhC--CeEEEEeCCHHHHHHHhcc
Confidence            45543   334444444    23332  367899887 999999983

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.44  E-value=2.9e-06  Score=75.13  Aligned_cols=108  Identities=21%  Similarity=0.214  Sum_probs=59.8

Q ss_pred             EEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-HhccCCCccCCCChHHHHHHHHH-------HHHHHHHHHHHHh-
Q 013831          271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-QMKVPGLLRKHNYSERFQCLMGR-------ANAIFDVLLSRAS-  341 (435)
Q Consensus       271 m~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-~~~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~ll~~al-  341 (435)
                      +.|+|||||||+|+++++.++   +++||..++.+ ++. .+       ++.++.+.+.       -...+..++...+ 
T Consensus         1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~-~~-------s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~   69 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIK-SD-------SELGKQIQEYLDNGELVPDELVIELLKERLE   69 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHH-TT-------SHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHh-hh-------hHHHHHHHHHHHhhccchHHHHHHHHHHHHh
Confidence            589999999999999999987   78888866544 332 11       1111111111       0112222333332 


Q ss_pred             --cCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHH
Q 013831          342 --RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       342 --~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~  389 (435)
                        ...+.+|||.---+..+-..+.+.+....  .-.+|+++.+ +++.+|...
T Consensus        70 ~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   70 QPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             SGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             hhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence              24678999995444443333222222232  3367788887 788888765

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14529 adenylate kinase; Provisional

Probab=98.43  E-value=1.9e-06  Score=81.41  Aligned_cols=115  Identities=17%  Similarity=0.146  Sum_probs=66.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhcC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASRT  343 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~~  343 (435)
                      |+|.|+|||||||.|+.+++.+.   +..+|+.++ |+.+. .+.    ........++..    -......++...+.+
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~---~~~is~gdllr~~i~-~~t----~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~   74 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYD---LAHIESGAIFREHIG-GGT----ELGKKAKEYIDRGDLVPDDITIPMILETLKQ   74 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CCCcccchhhhhhcc-CCC----hHHHHHHHHHhccCcchHHHHHHHHHHHHhc
Confidence            77899999999999999999987   556665444 44321 111    011111111111    001122233333321


Q ss_pred             --CCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          344 --PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       344 --g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                        .+.+|||.---+..+-..+...+...+  .-.+++++.+ +++++|+..|.
T Consensus        75 ~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~  127 (223)
T PRK14529         75 DGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR  127 (223)
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence              567999996555555444333444433  3357788887 88999999883

>PRK13947 shikimate kinase; Provisional

Probab=98.42  E-value=1.1e-06  Score=79.13  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      -|+++|+|||||||+|+.+++.++   +..++.|.+++++
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~~~~~~   39 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDKEIEKM   39 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECchhhhhh
Confidence            389999999999999999999987   5567788776654

>PRK13948 shikimate kinase; Provisional

Probab=98.41  E-value=3e-06  Score=77.75  Aligned_cols=107  Identities=17%  Similarity=0.212  Sum_probs=63.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-cCC--CChH-HHHHHHHHHHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSE-RFQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-~~~--~~~~-~~~~~~~~~~~~~~~ll~~a  340 (435)
                      .+..|+|+|+|||||||+++.+++.++   +..+++|.+++++.  |.. .+.  .+.+ .|..+..       +++..+
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~~~--g~si~~if~~~Ge~~fR~~E~-------~~l~~l   76 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIERVT--GKSIPEIFRHLGEAYFRRCEA-------EVVRRL   76 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHHHH--hCCHHHHHHHhCHHHHHHHHH-------HHHHHH
Confidence            467899999999999999999999887   55678898776642  310 000  0111 1221111       223333


Q ss_pred             hcCCCeEEEe---CCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIID---QTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD---~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +..+.. ||.   .+...+..|+.    +.+.  -.+|++..+ +++.+|+..+
T Consensus        77 ~~~~~~-VIa~GgG~v~~~~n~~~----l~~~--g~vV~L~~~~e~l~~Rl~~~  123 (182)
T PRK13948         77 TRLDYA-VISLGGGTFMHEENRRK----LLSR--GPVVVLWASPETIYERTRPG  123 (182)
T ss_pred             HhcCCe-EEECCCcEEcCHHHHHH----HHcC--CeEEEEECCHHHHHHHhcCC
Confidence            344444 444   45566665553    3332  346678776 8899998543

>PRK08118 topology modulation protein; Reviewed

Probab=98.39  E-value=1.6e-06  Score=78.41  Aligned_cols=98  Identities=15%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v  347 (435)
                      -|+++|+|||||||+|+++++.++   ..+++.|.+...   .| +.   .... +...        .+++.+++ +...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~l~~~---~~-w~---~~~~-~~~~--------~~~~~~~~-~~~w   62 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLN---IPVHHLDALFWK---PN-WE---GVPK-EEQI--------TVQNELVK-EDEW   62 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCceecchhhcc---cC-Cc---CCCH-HHHH--------HHHHHHhc-CCCE
Confidence            478999999999999999999886   445666765422   12 10   0110 1111        12222223 3579


Q ss_pred             EEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhh
Q 013831          348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      |+|.... ... ...+   ..  --.+|+++.| +.|..|+.+|..
T Consensus        63 VidG~~~-~~~-~~~l---~~--~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         63 IIDGNYG-GTM-DIRL---NA--ADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             EEeCCcc-hHH-HHHH---Hh--CCEEEEEeCCHHHHHHHHHHHHH
Confidence            9999633 221 1111   11  2346788887 788889888843

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.39  E-value=3e-06  Score=80.57  Aligned_cols=112  Identities=21%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHH--------HHHHHHHHHHHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSR  339 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~  339 (435)
                      |++.|+|||||||+|+.+++.++   +.+||+|++.++ +...+.     ....-..+.        +.....+...+..
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~~t~-----lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~   80 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKAKTT-----IGKEIQKVVTSGNLVPDNLVIAIVKDEIAK   80 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhcCCh-----HHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence            88899999999999999999987   778888776543 221010     000000000        0111122222222


Q ss_pred             H-hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          340 A-SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       340 a-l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      . ....+.+|||.---+..++.. +..+  .....+++++.+ +++++|+..|.
T Consensus        81 ~~~~~~~g~iLDGfPRt~~Qa~~-l~~~--~~~~~vi~l~~~~~~~~~Rl~~Rr  131 (229)
T PTZ00088         81 VTDDCFKGFILDGFPRNLKQCKE-LGKI--TNIDLFVNIYLPRNILIKKLLGRR  131 (229)
T ss_pred             hccccCceEEEecCCCCHHHHHH-HHhc--CCCCEEEEEeCCHHHHHHHHHcCc
Confidence            1 134567999995444444432 3222  123456788887 78899998883

>smart00072 GuKc Guanylate kinase homologues

Probab=98.39  E-value=1.1e-06  Score=80.62  Aligned_cols=115  Identities=13%  Similarity=0.196  Sum_probs=60.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHHH------------
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGRA------------  329 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~~------------  329 (435)
                      .++|+++|++||||+|+++.|.+..+..-..+++. .- +..+ .|..  .++.|  ...++...+.-            
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~-Tt-R~~r-~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~   78 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSH-TT-RPPR-PGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNY   78 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeee-cC-CCCC-CCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcC
Confidence            46899999999999999999999875311111111 00 1111 1110  01111  12222221110            


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEEC-Ch-HHHHHHHHHh
Q 013831          330 NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFP-KP-EDLKIRSVKR  390 (435)
Q Consensus       330 ~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~-~~-ee~~~R~~~R  390 (435)
                      .......+..+++.|+.+|+|.+ .. .     +..+.. +....+|++. ++ +++.+|+..|
T Consensus        79 YGt~~~~i~~~~~~~~~~ild~~-~~-~-----~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R  135 (184)
T smart00072       79 YGTSKETIRQVAEQGKHCLLDID-PQ-G-----VKQLRKAQLYPIVIFIAPPSSEELERRLRGR  135 (184)
T ss_pred             cccCHHHHHHHHHcCCeEEEEEC-HH-H-----HHHHHHhCCCcEEEEEeCcCHHHHHHHHHhc
Confidence            00112245556688999999986 32 1     122222 2244566774 33 6799999988

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK04182 cytidylate kinase; Provisional

Probab=98.39  E-value=8.8e-07  Score=80.19  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc-cCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~  346 (435)
                      +|+++|.|||||||+|+.+++.++   +..++.|++.+... ..|.... .+. ............+...+......+.+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg---~~~id~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLG---LKHVSAGEIFRELAKERGMSLE-EFN-KYAEEDPEIDKEIDRRQLEIAEKEDN   76 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CcEecHHHHHHHHHHHcCCCHH-HHH-HHhhcCchHHHHHHHHHHHHHhcCCC
Confidence            689999999999999999999887   66787666544321 1221100 000 00000000011122222222224567


Q ss_pred             EEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +|+|.....      ++  +... ...+|++.+| +++.+|+..|.
T Consensus        77 ~Vi~g~~~~------~~--~~~~-~~~~V~l~a~~e~~~~Rl~~r~  113 (180)
T PRK04182         77 VVLEGRLAG------WM--AKDY-ADLKIWLKAPLEVRAERIAERE  113 (180)
T ss_pred             EEEEEeecc------eE--ecCC-CCEEEEEECCHHHHHHHHHhcc
Confidence            888874321      10  1111 2345688887 88999998883

>PRK13949 shikimate kinase; Provisional

Probab=98.37  E-value=4.8e-06  Score=75.47  Aligned_cols=36  Identities=19%  Similarity=0.417  Sum_probs=30.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      =|+++|+|||||||+++.+++.+.   +..+++|.+..+
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i~~   38 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG---LSFIDLDFFIEN   38 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CCeecccHHHHH
Confidence            478999999999999999999987   667888876543

>PRK06547 hypothetical protein; Provisional

Probab=98.36  E-value=1.4e-06  Score=79.25  Aligned_cols=114  Identities=18%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHH---------
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFD---------  334 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~---------  334 (435)
                      ..+.+|++.|+|||||||+|+.+++.++   +..++.|.+....  .+.      ....+.+.+.....-+         
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d~~~~~~--~~~------~~~~~~l~~~~l~~g~~~~~~yd~~   81 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLYPGW--HGL------AAASEHVAEAVLDEGRPGRWRWDWA   81 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeecccceeccc--ccC------ChHHHHHHHHHHhCCCCceecCCCC
Confidence            3467899999999999999999999875   5567777543210  010      0011111111100000         


Q ss_pred             -H-HHH-HHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          335 -V-LLS-RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       335 -~-ll~-~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                       . ... ..+..+.++|++........   ....+.+.+.+.+|++++| +++.+|..+|.
T Consensus        82 ~~~~~~~~~l~~~~vVIvEG~~al~~~---~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd  139 (172)
T PRK06547         82 NNRPGDWVSVEPGRRLIIEGVGSLTAA---NVALASLLGEVLTVWLDGPEALRKERALARD  139 (172)
T ss_pred             CCCCCCcEEeCCCCeEEEEehhhccHH---HHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence             0 000 01224567889997665322   2222333335678899998 89999999993

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.33  E-value=6.7e-06  Score=74.71  Aligned_cols=109  Identities=12%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      ...|+++|++||||||+++.++..+.   +..+++|..++++.  |..-...+.. ...........    ++...... 
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i~~~~--g~~i~~~~~~~g~~~fr~~e~~----~l~~l~~~-   73 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKRT--GADIGWVFDVEGEEGFRDREEK----VINELTEK-   73 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchHHHHh--CcCHhHHHHHhCHHHHHHHHHH----HHHHHHhC-
Confidence            35689999999999999999999876   55677786555432  2100000100 00111111122    33232233 


Q ss_pred             CeEEEeCC---CcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          345 RNFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       345 ~~vIlD~T---n~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ..+|+...   -..+..|.    .+...  -.+|+++.+ +++.+|+..+
T Consensus        74 ~~~vi~~ggg~v~~~~~~~----~l~~~--~~vv~L~~~~e~~~~Ri~~~  117 (172)
T PRK05057         74 QGIVLATGGGSVKSRETRN----RLSAR--GVVVYLETTIEKQLARTQRD  117 (172)
T ss_pred             CCEEEEcCCchhCCHHHHH----HHHhC--CEEEEEeCCHHHHHHHHhCC
Confidence            34555532   23333333    23332  257889887 9999999765

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.32  E-value=5.3e-06  Score=77.09  Aligned_cols=27  Identities=19%  Similarity=0.407  Sum_probs=24.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..++|+++|++||||||+++.++..++
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            467999999999999999999998875

>PRK14526 adenylate kinase; Provisional

Probab=98.30  E-value=1.6e-06  Score=81.36  Aligned_cols=111  Identities=20%  Similarity=0.250  Sum_probs=60.0

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh--
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS--  341 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al--  341 (435)
                      |+++|+|||||||+++.+++.++   +.+++++++ |+.+. .+.    ........+++.    -......++...+  
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~---~~~is~G~llr~~~~-~~t----~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~   74 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN---YYHISTGDLFRENIL-NST----PLGKEIKQIVENGQLVPDSITIKIVEDKINT   74 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceeecChHHHHhcc-cCC----hhhHHHHHHHHcCccCChHHHHHHHHHHHhc
Confidence            67899999999999999998876   567777665 44332 111    000000111100    0011112222222  


Q ss_pred             -cCCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhh
Q 013831          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                       .....+|||.---+..+-    +.+... ....++++..+ +++.+|+..|.
T Consensus        75 ~~~~~g~ilDGfPR~~~Qa----~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~  123 (211)
T PRK14526         75 IKNNDNFILDGFPRNINQA----KALDKFLPNIKIINFLIDEELLIKRLSGRR  123 (211)
T ss_pred             ccccCcEEEECCCCCHHHH----HHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence             235679999743333322    223332 23456667666 88999999884

>PLN02459 probable adenylate kinase

Probab=98.29  E-value=4e-06  Score=80.80  Aligned_cols=111  Identities=21%  Similarity=0.194  Sum_probs=62.4

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-  342 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~-  342 (435)
                      |++.|+|||||||.|+.+++.++   +.+||+.++ |+++. .+.    ........++..    -...+..++...+. 
T Consensus        32 ii~~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~ei~-~~t----~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~  103 (261)
T PLN02459         32 WVFLGCPGVGKGTYASRLSKLLG---VPHIATGDLVREEIK-SSG----PLGAQLKEIVNQGKLVPDEIIFSLLSKRLEA  103 (261)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CcEEeCcHHHHHHHh-ccc----hhHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Confidence            66689999999999999999887   677777554 55442 111    011111111110    00111223322222 


Q ss_pred             ----CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831          343 ----TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       343 ----~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                          ..+.+|||.---+..+ ...+   .... .-.+++++.+ +.+++|+..|.
T Consensus       104 ~~~~~~~g~iLDGFPRt~~Q-a~~L---e~~~~id~Vi~L~v~d~~l~~Rl~gR~  154 (261)
T PLN02459        104 GEEEGESGFILDGFPRTVRQ-AEIL---EGVTDIDLVVNLKLREEVLVEKCLGRR  154 (261)
T ss_pred             ccccCCceEEEeCCCCCHHH-HHHH---HhcCCCCEEEEEECCHHHHHHHhhccc
Confidence                3467999995443332 2223   3322 2356788887 78999999883

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.27  E-value=2e-05  Score=72.56  Aligned_cols=123  Identities=16%  Similarity=0.062  Sum_probs=64.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEec----c---HHHHHHhccCCCccCCCChHHH-HHHHHHH-HHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG----T---NLILEQMKVPGLLRKHNYSERF-QCLMGRA-NAIFD  334 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls----~---D~ir~~~~~~G~~~~~~~~~~~-~~~~~~~-~~~~~  334 (435)
                      ..+|++.|+|||||||+++.|++.+...+  ++.+.    +   +.+++.+ ..+.  .....+.. ..+.... .+.+.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~-~~~~--~~~~~~~~~~~l~~~~r~~~~~   79 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELL-LNEN--DEPLTDKAEALLFAADRHEHLE   79 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHH-cCCC--ccCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999998875322  22221    1   2333321 1111  11122111 1111110 12333


Q ss_pred             HHHHHHhcCCCeEEEeCCCcCHHHH--------HHHHHHHhc-C-C--cEEEEEECCh-HHHHHHHHHhh
Q 013831          335 VLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVN-F-R--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~-~-~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ..+..++..+..||+|....+.-..        ..++..+.. . .  .-.+|++.++ +++++|+..|.
T Consensus        80 ~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~  149 (195)
T TIGR00041        80 DKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG  149 (195)
T ss_pred             HHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            4555667789999999532221100        112332221 1 1  2356788876 88999998884

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.27  E-value=2e-05  Score=74.54  Aligned_cols=127  Identities=17%  Similarity=0.258  Sum_probs=85.9

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc-cCC--C---ccCCCChHHHHH-----------
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPG--L---LRKHNYSERFQC-----------  324 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~-~~G--~---~~~~~~~~~~~~-----------  324 (435)
                      ..+.+.+|++-|.||.||||+|..++.+++=  -.+|++|.||+-|+ +.+  .   +....| .+|+.           
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI--~~visTD~IREvlR~ii~~~l~PtLh~Ssy-~Awkalr~~~~~~pii  161 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGI--RSVISTDSIREVLRKIISPELLPTLHTSSY-DAWKALRDPTDENPII  161 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCC--ceeecchHHHHHHHHhCCHHhcchhhHhHH-HHHHHhcCCCCCcchh
Confidence            4456789999999999999999999999873  25789999988775 222  1   000001 22322           


Q ss_pred             --HHHHH---HHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCc-EEEEEECChHHHHHHHHHhhhhc
Q 013831          325 --LMGRA---NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRK-IAVVVFPKPEDLKIRSVKRFKEM  394 (435)
Q Consensus       325 --~~~~~---~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~-~~vv~l~~~ee~~~R~~~R~~~~  394 (435)
                        ..+++   .--++..+++|+..|.++||...|+-|..-+..  .+ +... ..++++.++++...|...|.+..
T Consensus       162 aGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~--~~-~~n~~~~~l~i~dee~Hr~RF~~R~~~t  234 (299)
T COG2074         162 AGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE--AL-GNNVFMFMLYIADEELHRERFYDRIRYT  234 (299)
T ss_pred             hhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh--hh-ccceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence              11222   234567889999999999999999988764432  12 2222 33456666788999999986543

>PRK06696 uridine kinase; Validated

Probab=98.26  E-value=4.8e-06  Score=78.80  Aligned_cols=40  Identities=23%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI  303 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~i  303 (435)
                      ..+.+|.++|+|||||||+|+.+++.++.  ..+++++.|.+
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf   61 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF   61 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence            35789999999999999999999988742  23667776654

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.26  E-value=9.4e-06  Score=74.72  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +|++.|++||||||+++.|.+.++
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~   24 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLG   24 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998754

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK08356 hypothetical protein; Provisional

Probab=98.25  E-value=1.5e-05  Score=73.87  Aligned_cols=114  Identities=18%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH-HHHHhccCCCccCCCCh-H-HH------HHHHHHHH------
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYS-E-RF------QCLMGRAN------  330 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~-ir~~~~~~G~~~~~~~~-~-~~------~~~~~~~~------  330 (435)
                      ..+|+++|+|||||||+|+.+. +++   +.+|+..+ +++.+...+.  ++.|. . .+      +.+.+...      
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g---~~~is~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~e~g~~~~~~y   78 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKG---FCRVSCSDPLIDLLTHNVS--DYSWVPEVPFKGEPTRENLIELGRYLKEKY   78 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCC---CcEEeCCCccccccccccc--ccccccHHHHhhccccccHHHHHHHHHHhc
Confidence            3578999999999999999995 444   44565543 2221111111  11110 0 00      11111111      


Q ss_pred             --HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          331 --AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       331 --~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                        ..+..++...++....+|||.- -+..+++.    +.... ..+|++.++ +++.+|+..|.
T Consensus        79 G~~~~~~~~~~~~~~~~~ividG~-r~~~q~~~----l~~~~-~~vi~l~~~~~~~~~Rl~~R~  136 (195)
T PRK08356         79 GEDILIRLAVDKKRNCKNIAIDGV-RSRGEVEA----IKRMG-GKVIYVEAKPEIRFERLRRRG  136 (195)
T ss_pred             CcHHHHHHHHHHhccCCeEEEcCc-CCHHHHHH----HHhcC-CEEEEEECCHHHHHHHHHhcC
Confidence              0001122112233447999975 55544442    32322 246677776 88999999884

>PRK13973 thymidylate kinase; Provisional

Probab=98.23  E-value=2.5e-05  Score=73.42  Aligned_cols=123  Identities=17%  Similarity=0.100  Sum_probs=68.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec---------cHHHHHHhccCCCccCCCChHHHHHHHHHHH--HHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG---------TNLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFD  334 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls---------~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~  334 (435)
                      ..+|++-|++||||||.++.+++.+...++.++.         .+.+|+.+. .+.  ...+.+.-+.+.-.+.  ..+.
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~-~~~--~~~~~~~~~~ll~~a~r~~~~~   79 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLL-SGA--AELYGPRMEALLFAAARDDHVE   79 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHc-CCC--ccCCCHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999887433232222         234444432 111  0112222111111111  2334


Q ss_pred             HHHHHHhcCCCeEEEeCCCcCHHHH--------HHHHHHHhc----CC-cEEEEEECCh-HHHHHHHHHhh
Q 013831          335 VLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVN----FR-KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~----~~-~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ..+.-++..|..||.|--..+.-..        ..++..+..    .. .-.++++++| +++++|+.+|.
T Consensus        80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~  150 (213)
T PRK13973         80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRR  150 (213)
T ss_pred             HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            4566678899999999743211111        112232221    11 3456788887 88999999885

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.18  E-value=3.8e-06  Score=77.30  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ||.++|.|||||||+|+.+++.+++  +.+|+.|.+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~--~~~i~~Ddf   34 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPN--CCVIHQDDF   34 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCC--CeEEccccc
Confidence            5789999999999999999998853  667888865

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.18  E-value=3.4e-05  Score=71.41  Aligned_cols=120  Identities=16%  Similarity=0.066  Sum_probs=62.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEec-------cHHHHHHhccCCCccCCCChHHHHHH----HHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLG-------TNLILEQMKVPGLLRKHNYSERFQCL----MGRANAI  332 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls-------~D~ir~~~~~~G~~~~~~~~~~~~~~----~~~~~~~  332 (435)
                      ..+|++.|++||||||+++.|.+.+...  .++...       .+.+++.+.  +...  ...+ +...    ..+ ...
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~--~~~~-~~~~~~~~~~r-~~~   76 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLL--DPNE--EMDD-KTELLLFYAAR-AQH   76 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHh--cccc--CCCH-HHHHHHHHHHH-HHH
Confidence            4689999999999999999998865321  122210       012222211  1000  1111 1111    111 122


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCcCHHHH--------HHHHHHHhc-----CCcEEEEEECCh-HHHHHHHHHhh
Q 013831          333 FDVLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVN-----FRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~-----~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +...+..++.+|..||+|-.-.+.-..        ..++..+..     ...-.+|+++++ +++.+|+.+|.
T Consensus        77 ~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~  149 (205)
T PRK00698         77 LEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARG  149 (205)
T ss_pred             HHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            333455566889999999422111000        112222221     123367788876 89999999984

>PRK08233 hypothetical protein; Provisional

Probab=98.17  E-value=1.6e-05  Score=72.14  Aligned_cols=28  Identities=18%  Similarity=0.380  Sum_probs=24.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK  293 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~  293 (435)
                      ..+|.+.|.|||||||+|+.+++.++..
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~   30 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNS   30 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            5789999999999999999999988643

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.17  E-value=2.4e-05  Score=72.58  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=32.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      .+|.++|.|||||||+++.+.+.++   +.+++.|.+.+++
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g---~~~i~~D~~~~~~   39 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKG---IPILDADIYAREA   39 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhC---CeEeeCcHHHHHH
Confidence            4789999999999999999998755   6788999886553

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.16  E-value=1.7e-05  Score=71.64  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +.|+++|+|||||||+|+.+++.++   +..++.|.++...
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg---~~~~d~D~~~~~~   40 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALG---YRFVDTDQWLQST   40 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC---CCEEEccHHHHHH
Confidence            4588899999999999999999886   5678889887654

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.14  E-value=1.7e-05  Score=69.25  Aligned_cols=112  Identities=18%  Similarity=0.164  Sum_probs=65.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ..+|+|.||+||||||+|-.|.+.+-  ++...+|.-|.+|-     |..++-.|.. ...+-+.+...    .....+.
T Consensus        31 GcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRh-----GLN~DL~F~a~dR~ENIRRige----VaKLFAD  101 (207)
T KOG0635|consen   31 GCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRH-----GLNKDLGFKAEDRNENIRRIGE----VAKLFAD  101 (207)
T ss_pred             CcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccc-----ccccccCcchhhhhhhHHHHHH----HHHHHhc
Confidence            56789999999999999998876543  34467888787653     3322223322 11222222221    2222245


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~  387 (435)
                      .|-.-|-.-...++..|+. -+.+...+.+.-||++.| +.|.+|.
T Consensus       102 ag~iciaSlISPYR~dRda-cRel~~~~~FiEvfmdvpl~vcE~RD  146 (207)
T KOG0635|consen  102 AGVICIASLISPYRKDRDA-CRELLPEGDFIEVFMDVPLEVCEARD  146 (207)
T ss_pred             cceeeeehhcCchhccHHH-HHHhccCCCeEEEEecCcHHHhhccC
Confidence            6655555555556666665 222322235666788988 8888774

>PLN02772 guanylate kinase

Probab=98.13  E-value=2.1e-05  Score=79.72  Aligned_cols=132  Identities=14%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCCh--HHHHHHHHH------------
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNYS--ERFQCLMGR------------  328 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~~--~~~~~~~~~------------  328 (435)
                      ..++++++|++|+||||++++|.+..+..-...++.-  -+..+ .|..  ..|.|.  +.++..++.            
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshT--TR~pR-~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn  210 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHT--TRAPR-EMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGN  210 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhcccccccccccc--CCCCc-ccccCCceEeeCCHHHHHHHHHhCccceeeeecCc
Confidence            3579999999999999999999887653111111110  01111 1110  011111  112111110            


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHH
Q 013831          329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNML  407 (435)
Q Consensus       329 ~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~  407 (435)
                      ..-.-.+.++.++++|+.+|+|-.   ....+.+.+..  ...+.+++++.+ +++.+|+..|    +.. .++.|+++.
T Consensus       211 ~YGTsk~~V~~vl~~Gk~vILdLD---~qGar~Lr~~~--l~~v~IFI~PPSlEeLe~RL~~R----Gte-seE~I~kRL  280 (398)
T PLN02772        211 LYGTSIEAVEVVTDSGKRCILDID---VQGARSVRASS--LEAIFIFICPPSMEELEKRLRAR----GTE-TEEQIQKRL  280 (398)
T ss_pred             cccccHHHHHHHHHhCCcEEEeCC---HHHHHHHHHhc--CCeEEEEEeCCCHHHHHHHHHhc----CCC-CHHHHHHHH
Confidence            000122355566789999999963   33333322211  223455555654 8999999988    433 344444444


Q ss_pred             hc
Q 013831          408 AN  409 (435)
Q Consensus       408 ~~  409 (435)
                      ++
T Consensus       281 ~~  282 (398)
T PLN02772        281 RN  282 (398)
T ss_pred             HH
Confidence            33

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.13  E-value=1.4e-05  Score=73.07  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=30.2

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +|.++|.|||||||+++.+.+ ++   +.+++.|.+.+++
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~   36 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LG---IPVIDADKIAHEV   36 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CC---CCEEecCHHHHhh
Confidence            478999999999999999988 54   6788889876554

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR00235 udk uridine kinase

Probab=98.12  E-value=1.1e-05  Score=75.32  Aligned_cols=41  Identities=20%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ++...+|.++|++||||||+++.++..++.....+++.|..
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~   43 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY   43 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence            34578999999999999999999998776333566777753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00152 dephospho-CoA kinase

Probab=98.10  E-value=3.5e-05  Score=70.83  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +|.++|.+||||||+++.+.+..+   +.+++.|.+.+++
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~---~~~i~~D~~~~~~   37 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYH---FPVIDADKIAHQV   37 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC---CeEEeCCHHHHHH
Confidence            478999999999999999988754   6688889885543

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PTZ00301 uridine kinase; Provisional

Probab=98.08  E-value=1.3e-05  Score=75.21  Aligned_cols=38  Identities=18%  Similarity=0.326  Sum_probs=28.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~i  303 (435)
                      |.||.+.|.|||||||+|+.+.+.+    ....+.+++.|..
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y   44 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY   44 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            6899999999999999999887654    2122446777754

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.08  E-value=3.4e-05  Score=72.15  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      .+.+|-+.|.+||||||+|+++...++.....+|+.|..
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y   45 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY   45 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc
Confidence            467899999999999999999999988555678888865

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=98.06  E-value=4.2e-05  Score=77.79  Aligned_cols=141  Identities=20%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc-----HHHHHHhc-cCCCccCCCCh---HHHHHHHH-HHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-----NLILEQMK-VPGLLRKHNYS---ERFQCLMG-RANAIFD  334 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-----D~ir~~~~-~~G~~~~~~~~---~~~~~~~~-~~~~~~~  334 (435)
                      ...+|+|+|+|++|||.++.++.+.+.   |..+++     -..++... ....  ...|.   ..-..+.+ .+..++.
T Consensus        27 ~~~~ivmvglpA~gKt~is~kl~ryl~---w~~~~tk~fn~g~yrr~~~~~~~s--~~ff~p~n~~~~~lr~~~a~~~l~  101 (438)
T KOG0234|consen   27 SKLVIVMVGLPARGKTYISSKLTRYLN---WLGVNTKVFNVGEYRREAVKKVDS--EPFFLPDNAEASKLRKQLALLALN  101 (438)
T ss_pred             CceEEEEecCCccCcchhhhhHHHHHH---hhccccccccHHHHHHHHhccccc--ccccccCChhhhhhhHHHHHHHhh
Confidence            357999999999999999999998765   333322     34444332 1111  11121   11122223 2334555


Q ss_pred             HHHHHHh-cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC---hHHHHHHHHHhhhhcCC----CCcHHHHHHH
Q 013831          335 VLLSRAS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK---PEDLKIRSVKRFKEMGK----EVPADAVNNM  406 (435)
Q Consensus       335 ~ll~~al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~---~ee~~~R~~~R~~~~~~----~vp~~vi~~m  406 (435)
                      .++.... ..|.++|.|+||.+++.|+.++..+.+-..+.+.+++.   +..++.+|..-....+.    .-.++++..+
T Consensus       102 D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~df  181 (438)
T KOG0234|consen  102 DLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDF  181 (438)
T ss_pred             hHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHH
Confidence            5665554 58899999999999999998777775223445544432   35677777662222221    2236666666


Q ss_pred             Hhcc
Q 013831          407 LANY  410 (435)
Q Consensus       407 ~~~f  410 (435)
                      .++.
T Consensus       182 l~ri  185 (438)
T KOG0234|consen  182 LKRI  185 (438)
T ss_pred             HHHH
Confidence            5543

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.06  E-value=1.7e-05  Score=74.03  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=33.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      .+.+|.++|.|||||||+++.+.+.++...+.+++.|.+
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~   43 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY   43 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence            478999999999999999999999885445677888764

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.05  E-value=4.6e-05  Score=70.58  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=31.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +.+|.++|.+||||||+++.+.+ ++   +.+++.|.+.+++
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~   39 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LG---APVIDADAIAHEV   39 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cC---CEEEEecHHHHHH
Confidence            46899999999999999999987 54   6788889876544

>PRK06761 hypothetical protein; Provisional

Probab=98.03  E-value=2e-05  Score=77.04  Aligned_cols=121  Identities=16%  Similarity=0.160  Sum_probs=70.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEE--e-ccHHHH-HHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYIL--L-GTNLIL-EQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~--l-s~D~ir-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ..+|+++|+|||||||+++.+++.+....+.+  + ..|... ..+  .+.  .......+....+......+.+++.+.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~--~~~~~eer~~~l~~~~~f~~~l~~~~~   78 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGV--ACFTKEEFDRLLSNYPDFKEVLLKNVL   78 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccc--cCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence            36899999999999999999999876432211  1 111100 011  111  111123344444443333344666777


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ..|..||+--.-+...+|+.+-...-...++..++ +.| +.+.+|...|-
T Consensus        79 ~~g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw  128 (282)
T PRK06761         79 KKGDYYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRW  128 (282)
T ss_pred             HcCCeEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHH
Confidence            89999999888787777775332111112455555 666 77888887773

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.03  E-value=4.4e-06  Score=70.99  Aligned_cols=103  Identities=23%  Similarity=0.170  Sum_probs=53.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccC---CCc--cCC-CC-hHHHHHHHHHHHHHHHHHHHHHh
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP---GLL--RKH-NY-SERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~---G~~--~~~-~~-~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      |++.|.|||||||+|+.|.+.+.   ...  .|.+.......   ...  ... .. ...+..+.....    .... ..
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~   70 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG---DII--RDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSII----QAIR-RM   70 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC---HHH--HHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHH----HHHH-HH
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC---cHH--HHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHH----Hhhc-cc
Confidence            68999999999999999999862   111  12222111000   000  000 11 111122222211    1111 34


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEE-EEECCh-HHHHHHHHHhh
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAV-VVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~v-v~l~~~-ee~~~R~~~R~  391 (435)
                      ..+.++|+|......          .... .... |++.++ +++.+|...|.
T Consensus        71 ~~~~~~iid~~~~~~----------~~~~~~~~~~i~L~~~~e~~~~R~~~R~  113 (129)
T PF13238_consen   71 NKGRNIIIDGILSNL----------ELERLFDIKFIFLDCSPEELRKRLKKRG  113 (129)
T ss_dssp             TTTSCEEEEESSEEE----------CETTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred             ccCCcEEEecccchh----------cccccceeeEEEEECCHHHHHHHHHhCC
Confidence            678899999975521          0111 1222 788876 89999999983

...

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.02  E-value=0.00012  Score=69.12  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +|++-|.-||||||+++.|++.+.
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~   24 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLG   24 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            578899999999999999998765

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.02  E-value=2.2e-05  Score=71.91  Aligned_cols=115  Identities=20%  Similarity=0.359  Sum_probs=61.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHHHH-----------
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGRAN-----------  330 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~~~-----------  330 (435)
                      .++|+|+|++||||||+++.|.+.+|..-...++...  +..+ .|..  .+|.|  ...++...+.-.           
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT--R~~r-~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~   78 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT--RPPR-PGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNY   78 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES--S-GG-TTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc--cCCc-ccccCCcceEEEeechhhhhhccccEEEEeeecchh
Confidence            5789999999999999999999988753212222111  1111 1111  11212  122222211100           


Q ss_pred             -HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEE--CChHHHHHHHHHh
Q 013831          331 -AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVF--PKPEDLKIRSVKR  390 (435)
Q Consensus       331 -~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l--~~~ee~~~R~~~R  390 (435)
                       -.....+..+++.|+.+|+|.. .  ..    ++.++... ...+||+  ++++++.+|+.+|
T Consensus        79 YGt~~~~i~~~~~~gk~~il~~~-~--~g----~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r  135 (183)
T PF00625_consen   79 YGTSKSAIDKVLEEGKHCILDVD-P--EG----VKQLKKAGFNPIVIFIKPPSPEVLKRRLRRR  135 (183)
T ss_dssp             EEEEHHHHHHHHHTTTEEEEEET-H--HH----HHHHHHCTTTEEEEEEEESSHHHHHHHHHTT
T ss_pred             hhhccchhhHhhhcCCcEEEEcc-H--HH----HHHHHhcccCceEEEEEccchHHHHHHHhcc
Confidence             0111344556689999999975 2  21    23333323 4555666  3457888888776

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=97.99  E-value=6.9e-05  Score=69.82  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=30.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      .+|.++|.+||||||+++.+.. .+   +.+++.|.+.+++
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g---~~vid~D~i~~~~   38 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EG---FLIVDADQVARDI   38 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC---CeEEeCcHHHHHH
Confidence            5789999999999999999986 44   6789999764443

>PLN02422 dephospho-CoA kinase

Probab=97.99  E-value=0.00011  Score=69.92  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      .+|.++|.+||||||+++.+.+ .+   +.+++.|.+.+++
T Consensus         2 ~~igltG~igsGKstv~~~l~~-~g---~~~idaD~~~~~l   38 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFKS-SG---IPVVDADKVARDV   38 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehhHHHHHH
Confidence            4789999999999999999984 44   6789999875544

>PRK13975 thymidylate kinase; Provisional

Probab=97.97  E-value=0.00036  Score=64.20  Aligned_cols=26  Identities=27%  Similarity=0.366  Sum_probs=23.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      .+|++.|++||||||+|+.+++.+..
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            68999999999999999999998863

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.94  E-value=0.00011  Score=72.18  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=59.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHH-hcC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA-SRT  343 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~a-l~~  343 (435)
                      .+++|+++|++||||||+++.+... +   +..+  |.+              ....+..+.+        ++... ...
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~~~-g---~~~~--d~~--------------~~~L~~~l~~--------~~~~~~~~~   56 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALEDL-G---YYCV--DNL--------------PPSLLPKLVE--------LLAQSGGIR   56 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHc-C---CeEE--CCc--------------CHHHHHHHHH--------HHHhcCCCC
Confidence            4679999999999999999999632 3   4443  210              0111111211        11111 124


Q ss_pred             CCeEEEeCCCcC--HHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 013831          344 PRNFIIDQTNVF--KSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       344 g~~vIlD~Tn~~--~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~  389 (435)
                      .-.|++|.++..  .+.+. .++.++..+ .+.+||++++ +++.+|...
T Consensus        57 ~~av~iD~r~~~~~~~~~~-~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~  105 (288)
T PRK05416         57 KVAVVIDVRSRPFFDDLPE-ALDELRERGIDVRVLFLDASDEVLIRRYSE  105 (288)
T ss_pred             CeEEEEccCchhhHHHHHH-HHHHHHHcCCcEEEEEEECCHHHHHHHHhh
Confidence            458999998652  23333 466666544 6778999987 899999875

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.94  E-value=7.5e-05  Score=74.30  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=30.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      ...|+++|+|||||||+++.+++.++   +..+..|..+.+
T Consensus       133 ~~~I~l~G~~GsGKStvg~~La~~Lg---~~~id~D~~i~~  170 (309)
T PRK08154        133 RRRIALIGLRGAGKSTLGRMLAARLG---VPFVELNREIER  170 (309)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHcC---CCEEeHHHHHHH
Confidence            46799999999999999999999886   445567765544

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.91  E-value=7.8e-05  Score=78.58  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=31.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      |+++|+|||||||+++.+++.+.   +..+++|.++++.
T Consensus         3 I~l~G~~GsGKSTv~~~La~~lg---~~~id~D~~i~~~   38 (488)
T PRK13951          3 IFLVGMMGSGKSTIGKRVSEVLD---LQFIDMDEEIERR   38 (488)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHH
Confidence            78999999999999999998886   6778889887664

>PLN02199 shikimate kinase

Probab=97.87  E-value=8.6e-05  Score=72.62  Aligned_cols=108  Identities=20%  Similarity=0.215  Sum_probs=60.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-cCC--CChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-~~~--~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      .-|+|+|.+||||||+++.+++.+.   +..+++|.+.++.. .|.. .+.  .+..  +...+.    ..+.+..+...
T Consensus       103 ~~I~LIG~~GSGKSTVgr~LA~~Lg---~~fIDtD~lIe~~~-~G~sI~eIf~~~GE--~~FR~~----E~e~L~~L~~~  172 (303)
T PLN02199        103 RSMYLVGMMGSGKTTVGKLMSKVLG---YTFFDCDTLIEQAM-NGTSVAEIFVHHGE--NFFRGK----ETDALKKLSSR  172 (303)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC---CCEEehHHHHHHHh-cCCCHHHHHHHhCH--HHHHHH----HHHHHHHHHhc
Confidence            4688999999999999999999886   67888898776631 1310 000  0111  111111    11223333233


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~  389 (435)
                       ..+||.. -.-.-.+..-++.+..   -.+||++.+ +++.+|+..
T Consensus       173 -~~~VISt-GGG~V~~~~n~~~L~~---G~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        173 -YQVVVST-GGGAVIRPINWKYMHK---GISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             -CCEEEEC-CCcccCCHHHHHHHhC---CeEEEEECCHHHHHHHHhh
Confidence             3555543 2221222222333332   246899887 999999885

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.86  E-value=4.4e-05  Score=69.82  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILE  305 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~  305 (435)
                      +|.++|.|||||||+|+.++..+.  +....+|+.|.+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            578999999999999999998753  22367889898754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.85  E-value=0.00028  Score=75.55  Aligned_cols=112  Identities=12%  Similarity=0.103  Sum_probs=62.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC-ccCCCChH-HHHHHHHHHHHHHHHHHHHHhc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSE-RFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~-~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ....|+|+|.|||||||+++.+++.+.   +-.+++|..+++.  .|. ..+ -|.. -++..++.-    .+.+...+.
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~ie~~--~g~si~e-if~~~Ge~~FR~~E----~~~l~~~~~   74 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEIERE--IGMSIPS-YFEEYGEPAFREVE----ADVVADMLE   74 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHH--HCcCHHH-HHHHHHHHHHHHHH----HHHHHHHHh
Confidence            456799999999999999999999987   5677888766553  231 111 0111 111111111    122322233


Q ss_pred             CCCeEEEeC---CCcCHHHHHHHHHH-HhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          343 TPRNFIIDQ---TNVFKSARKRKLRL-FVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       343 ~g~~vIlD~---Tn~~~~~R~~~~~~-~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .. +.||..   +-..++.|+. +.. +++.  -.+||+..+ +++.+|+..+
T Consensus        75 ~~-~~VIs~GGG~v~~~~n~~~-L~~~~~~~--g~vv~L~~~~~~l~~Rl~~~  123 (542)
T PRK14021         75 DF-DGIFSLGGGAPMTPSTQHA-LASYIAHG--GRVVYLDADPKEAMERANRG  123 (542)
T ss_pred             cC-CeEEECCCchhCCHHHHHH-HHHHHhcC--CEEEEEECCHHHHHHHHhCC
Confidence            33 344532   1234444443 322 2332  257889886 8999998643

>PLN02924 thymidylate kinase

Probab=97.83  E-value=0.00027  Score=66.81  Aligned_cols=119  Identities=17%  Similarity=0.093  Sum_probs=63.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEec-----c---HHHHHHhccCCCccCCCChHH-HHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG-----T---NLILEQMKVPGLLRKHNYSER-FQCLMGRANAIF  333 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls-----~---D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~  333 (435)
                      ...+|++.|++||||||.++.+++.+....  ++.+.     +   ..+++.+.  +. .  ...+. ...+....+...
T Consensus        15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~--~~-~--~~~~~~~~llf~adR~~~   89 (220)
T PLN02924         15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS--NK-S--QLDDRAIHLLFSANRWEK   89 (220)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHh--CC-C--CCCHHHHHHHHHHHHHHH
Confidence            367999999999999999999998775322  12211     1   12333221  11 0  11111 111111111111


Q ss_pred             HHHHHHHhcCCCeEEEeCCCcCHHHH-------HHHHHHHhcC-C-cEEEEEECCh-HHHHHHHH
Q 013831          334 DVLLSRASRTPRNFIIDQTNVFKSAR-------KRKLRLFVNF-R-KIAVVVFPKP-EDLKIRSV  388 (435)
Q Consensus       334 ~~ll~~al~~g~~vIlD~Tn~~~~~R-------~~~~~~~~~~-~-~~~vv~l~~~-ee~~~R~~  388 (435)
                      ...+..+++.|..||+|.-..+.-..       ..++..+... . +-.+++++.+ +++++|..
T Consensus        90 ~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~  154 (220)
T PLN02924         90 RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG  154 (220)
T ss_pred             HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence            23466778999999999865532111       1223333322 1 3356788876 88888854

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.80  E-value=0.00046  Score=60.97  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=78.8

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc----cC--CCccCC---CChHH-----HHHHHH
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK----VP--GLLRKH---NYSER-----FQCLMG  327 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~----~~--G~~~~~---~~~~~-----~~~~~~  327 (435)
                      ...+.++|++-|.|-||||++|..+..-..+ .|..|..|.+.+.+-    ..  |...+.   .....     ...+.+
T Consensus        19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~-pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e   97 (205)
T COG3896          19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAE-PWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILE   97 (205)
T ss_pred             CCCCceEEEecCCCccchhHHHHHHHHHhhc-chhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHH
Confidence            3445799999999999999999999865432 388899998876542    11  210000   00001     122344


Q ss_pred             HHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       328 ~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .+....+..|...+..|.+||.|+.-.++..--.-++.+..+ ++.+|=+.+| |+..+|-.+|
T Consensus        98 ~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~-~v~~VGV~~p~E~~~~Re~rr  160 (205)
T COG3896          98 LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGC-RVWMVGVHVPDEEGARRELRR  160 (205)
T ss_pred             HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCC-ceEEEEeeccHHHHHHHHhhc
Confidence            433334445666678999999999877644333323333332 6777777777 7777776666

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.79  E-value=0.00035  Score=65.41  Aligned_cols=38  Identities=16%  Similarity=0.120  Sum_probs=30.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +.+|.++|.+||||||+++.+.. ++   +.+++.|.+.+++
T Consensus         5 ~~~igitG~igsGKSt~~~~l~~-~g---~~v~d~D~i~~~~   42 (208)
T PRK14731          5 PFLVGVTGGIGSGKSTVCRFLAE-MG---CELFEADRVAKEL   42 (208)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-CC---CeEEeccHHHHHH
Confidence            46788999999999999999986 43   6788888665443

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.79  E-value=0.00012  Score=67.64  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=30.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      ||.++|++||||||+++.+...+++....+++.|.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            5789999999999999999988754447788888754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.78  E-value=8.8e-05  Score=70.14  Aligned_cols=36  Identities=22%  Similarity=0.145  Sum_probs=27.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI  303 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~i  303 (435)
                      +|-++|++||||||+|+.++..+.    +..+.+|+.|..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            467899999999999999987762    234667777754

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.75  E-value=0.00011  Score=64.23  Aligned_cols=102  Identities=25%  Similarity=0.305  Sum_probs=54.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFI  348 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~vI  348 (435)
                      |+++|-||.||||++.++++...- .++-+| |.+++. .+...     |...|+-..-.- ..+...++-++..| ..|
T Consensus        10 ILvtGTPG~GKstl~~~lae~~~~-~~i~is-d~vkEn-~l~~g-----yDE~y~c~i~DE-dkv~D~Le~~m~~G-g~I   79 (176)
T KOG3347|consen   10 ILVTGTPGTGKSTLAERLAEKTGL-EYIEIS-DLVKEN-NLYEG-----YDEEYKCHILDE-DKVLDELEPLMIEG-GNI   79 (176)
T ss_pred             EEEeCCCCCCchhHHHHHHHHhCC-ceEehh-hHHhhh-cchhc-----ccccccCccccH-HHHHHHHHHHHhcC-CcE
Confidence            788999999999999999987762 255554 444433 12211     122221000000 01112334444443 455


Q ss_pred             EeC--CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          349 IDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       349 lD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +|-  +-+.++   +|        --.||++.+| +.+..|++.|.
T Consensus        80 VDyHgCd~Fpe---rw--------fdlVvVLr~~~s~LY~RL~sRg  114 (176)
T KOG3347|consen   80 VDYHGCDFFPE---RW--------FDLVVVLRTPNSVLYDRLKSRG  114 (176)
T ss_pred             EeecccCccch---hh--------eeEEEEEecCchHHHHHHHHcC
Confidence            664  222211   01        1235667888 89999999993

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.74  E-value=0.00048  Score=64.32  Aligned_cols=39  Identities=18%  Similarity=0.114  Sum_probs=31.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +..|.++|.+||||||+++.+.+.++   +.+++.|.+.+++
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~lg---~~vidaD~i~~~l   44 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEKLN---LNVVCADTISREI   44 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHcC---CeEEeccHHHHHH
Confidence            46799999999999999999998765   5578888775544

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.72  E-value=0.00017  Score=66.90  Aligned_cols=36  Identities=11%  Similarity=0.155  Sum_probs=28.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +|.++|.+||||||+++.+.. .+   +.+++.|.+-+++
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g---~~~i~~D~i~~~~   36 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LG---AFGISADRLAKRY   36 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CC---CEEEecchHHHHH
Confidence            578999999999999998865 43   6778888775443

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=97.72  E-value=0.00026  Score=67.86  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      .+|-++|-.||||||+++.+.+.++   +.+++.|.+-+++
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G---~~viDaD~iar~l   39 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHH---IEVIDADLVVREL   39 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CeEEehHHHHHHH
Confidence            5788999999999999999987655   6789999875544

>PLN02842 nucleotide kinase

Probab=97.67  E-value=0.00036  Score=73.19  Aligned_cols=32  Identities=38%  Similarity=0.470  Sum_probs=26.4

Q ss_pred             EEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       270 im~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      |+.|+|||||||.|+.+++.++   +.+|+++++.
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg---~~hIs~gdLL   32 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG---LVHISTGDLL   32 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC---CCEEEccHHH
Confidence            5899999999999999999887   5667665543

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.65  E-value=0.00024  Score=63.81  Aligned_cols=101  Identities=23%  Similarity=0.209  Sum_probs=54.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v  347 (435)
                      +|+++|.||.||||++++|. .++-+ ++.+  .++..+.+.   ...+  .+.++...-... .++..++..+ ...+.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~-~i~l--~el~~e~~~---~~~~--de~r~s~~vD~d-~~~~~le~~~-~~~~~   70 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYK-VIEL--NELAKENGL---YTEY--DELRKSVIVDVD-KLRKRLEELL-REGSG   70 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCc-eeeH--HHHHHhcCC---eecc--CCccceEEeeHH-HHHHHHHHHh-ccCCe
Confidence            58899999999999999999 65521 3444  344454432   1111  111100000000 1112232222 55688


Q ss_pred             EEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHh
Q 013831          348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKR  390 (435)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-~ee~~~R~~~R  390 (435)
                      |+|. |+.        .++..  .=.+|++.+ |+.+.+|++.|
T Consensus        71 Ivd~-H~~--------hl~~~--~dlVvVLR~~p~~L~~RLk~R  103 (180)
T COG1936          71 IVDS-HLS--------HLLPD--CDLVVVLRADPEVLYERLKGR  103 (180)
T ss_pred             Eeec-hhh--------hcCCC--CCEEEEEcCCHHHHHHHHHHc
Confidence            8887 331        11221  123456676 59999999999

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.62  E-value=0.00067  Score=63.18  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=30.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~  305 (435)
                      +.+|-++|-|||||||+|+.+.+ .+   +.+++.|.+.+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G---~~vidaD~v~r   37 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LG---FPVIDADDVAR   37 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cC---CeEEEccHHHH
Confidence            57899999999999999999988 54   67888887755

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.62  E-value=6.6e-05  Score=69.39  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=27.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCcc------EEEeccHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKR------YILLGTNL  302 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~------~~~ls~D~  302 (435)
                      ||-++|+|||||||+|+.+...++...      ...++.|.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~   41 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD   41 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence            688999999999999999998776321      34566654

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.62  E-value=0.00018  Score=62.82  Aligned_cols=24  Identities=17%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +|+++|++||||||+++.+++.++
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            478899999999999999998865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PLN02165 adenylate isopentenyltransferase

Probab=97.62  E-value=0.00036  Score=69.58  Aligned_cols=35  Identities=17%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ..+|+++|++||||||+|..++..++   ..+||.|.+
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~~l~---~eIIsaDs~   77 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLATRFP---SEIINSDKM   77 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHcC---CceecCChh
Confidence            45899999999999999999999987   467888875

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.61  E-value=0.00048  Score=63.90  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ..+|++.|+-|+||||+|+.|++.++.
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~   30 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGF   30 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCC
Confidence            468999999999999999999999884

>PRK07667 uridine kinase; Provisional

Probab=97.60  E-value=0.00096  Score=61.68  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~i  303 (435)
                      ..+|.|+|+|||||||+|+.+.+.+..  ....+++.|.+
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~   56 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY   56 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence            478999999999999999999887532  23667888864

>TIGR00017 cmk cytidylate kinase

Probab=97.59  E-value=0.00087  Score=63.24  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      .+|.+.|++||||||+++.+++.++   +..++++.+.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~---~~~~~~g~~~   37 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLG---YAYLDSGAMY   37 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---CceeeCchHH
Confidence            4788999999999999999999887   5566776554

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.00078  Score=59.82  Aligned_cols=62  Identities=18%  Similarity=0.265  Sum_probs=43.5

Q ss_pred             HHHHhcCCCeEEEeCCCcCHHHHHHHHHHHh-cCCcEEEEEECC-hHHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831          337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFV-NFRKIAVVVFPK-PEDLKIRSVKRFKEMGKEVPADAVNNMLAN  409 (435)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~-~~~~~~vv~l~~-~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~  409 (435)
                      |..-+..|..||+..+      |. .+-.++ .|....+|.+.. |+.+.+|+.+|    |+.-.+++..++...
T Consensus        87 Id~wl~~G~vvl~NgS------Ra-~Lp~arrry~~Llvv~ita~p~VLaqRL~~R----GREs~eeI~aRL~R~  150 (192)
T COG3709          87 IDLWLAAGDVVLVNGS------RA-VLPQARRRYPQLLVVCITASPEVLAQRLAER----GRESREEILARLARA  150 (192)
T ss_pred             HHHHHhCCCEEEEecc------Hh-hhHHHHHhhhcceeEEEecCHHHHHHHHHHh----ccCCHHHHHHHHHhh
Confidence            4445689999998764      22 222232 355677777776 49999999999    777778888888653

>PRK13974 thymidylate kinase; Provisional

Probab=97.53  E-value=0.0017  Score=60.90  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      .++|++.|++||||||.++.+++.++.
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~   29 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPS   29 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            478999999999999999999987753

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.51  E-value=0.00042  Score=58.85  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=27.5

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      |++.|+||+||||+|+.+++.+. ..++.++...+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~-~~~~~i~~~~~   34 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG-FPFIEIDGSEL   34 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT-SEEEEEETTHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc-ccccccccccc
Confidence            68999999999999999999986 33566665554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=97.51  E-value=0.0017  Score=59.35  Aligned_cols=116  Identities=20%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             EccCCCChhHHHHHHHhhCCCccEE-Eecc--------HHHHHHhccCCCccCCCChHH-HHHHHHHHH-HHHHHHHHHH
Q 013831          272 VGLPASGKTTWAEKWVKDHPEKRYI-LLGT--------NLILEQMKVPGLLRKHNYSER-FQCLMGRAN-AIFDVLLSRA  340 (435)
Q Consensus       272 ~GlPGSGKST~A~~l~~~~~~~~~~-~ls~--------D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~-~~~~~ll~~a  340 (435)
                      =|+.||||||.++.+.+.+...... .+..        +.+++.+.  +   .....+. ...+..... ..+...+..+
T Consensus         2 EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~--~---~~~~~~~~~~~l~~a~r~~~~~~~I~~~   76 (186)
T PF02223_consen    2 EGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLR--S---ESELSPEAEALLFAADRAWHLARVIRPA   76 (186)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHH--T---SSTCGHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHh--c---ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4999999999999998876543332 2211        12232221  1   1112221 111111111 2334456677


Q ss_pred             hcCCCeEEEeCCCcCHHHH--------HHHHHHHh-cC---CcEEEEEECC-hHHHHHHHHHhhh
Q 013831          341 SRTPRNFIIDQTNVFKSAR--------KRKLRLFV-NF---RKIAVVVFPK-PEDLKIRSVKRFK  392 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R--------~~~~~~~~-~~---~~~~vv~l~~-~ee~~~R~~~R~~  392 (435)
                      +++|..||+|---.+.-..        ..++..+. ..   .+=.+++++. |+++.+|...|..
T Consensus        77 l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~  141 (186)
T PF02223_consen   77 LKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE  141 (186)
T ss_dssp             HHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred             HcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence            8899999999521111100        01121111 11   2223456666 4999999999954

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=97.50  E-value=0.00053  Score=61.22  Aligned_cols=100  Identities=18%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             CCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC-ccCCCChH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeC-
Q 013831          275 PASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSE-RFQCLMGRANAIFDVLLSRASRTPRNFIIDQ-  351 (435)
Q Consensus       275 PGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~-~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~~g~~vIlD~-  351 (435)
                      |||||||+++.+++.+.   +-.++.|..+.+.  .|. ..+ -+.. -++...+    .-.+++...+... +.||.. 
T Consensus         1 ~GsGKStvg~~lA~~L~---~~fiD~D~~i~~~--~g~si~~-i~~~~G~~~fr~----~E~~~l~~l~~~~-~~VIa~G   69 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLG---RPFIDLDDEIEER--TGMSISE-IFAEEGEEAFRE----LESEALRELLKEN-NCVIACG   69 (158)
T ss_dssp             TTSSHHHHHHHHHHHHT---SEEEEHHHHHHHH--HTSHHHH-HHHHHHHHHHHH----HHHHHHHHHHCSS-SEEEEE-
T ss_pred             CCCcHHHHHHHHHHHhC---CCccccCHHHHHH--hCCcHHH-HHHcCChHHHHH----HHHHHHHHHhccC-cEEEeCC
Confidence            79999999999999987   6778888876553  231 000 0111 0111111    1122344444554 555544 


Q ss_pred             --CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          352 --TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       352 --Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                        +-..++.|+    .++.  .-.+||++.+ +++.+|+..+.
T Consensus        70 GG~~~~~~~~~----~L~~--~g~vI~L~~~~~~l~~Rl~~~~  106 (158)
T PF01202_consen   70 GGIVLKEENRE----LLKE--NGLVIYLDADPEELAERLRARD  106 (158)
T ss_dssp             TTGGGSHHHHH----HHHH--HSEEEEEE--HHHHHHHHHHHC
T ss_pred             CCCcCcHHHHH----HHHh--CCEEEEEeCCHHHHHHHHhCCC
Confidence              334444333    3332  3457888776 89999998874

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.48  E-value=0.0004  Score=73.77  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ...+|.++|++||||||+|+.++..++.  ..+|+.|..
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp~--vgvIsmDdy  100 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMPS--IAVISMDNY  100 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCCC--cEEEEEcce
Confidence            4679999999999999999999988864  456666754

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.47  E-value=0.00045  Score=68.55  Aligned_cols=34  Identities=29%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ..+|+++|++||||||+|..+++.++   ..+||.|.
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~---~~iis~Ds   37 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLN---GEIISADS   37 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCC---CcEEeccc
Confidence            57999999999999999999999987   46788887

>PLN02348 phosphoribulokinase

Probab=97.42  E-value=0.00085  Score=68.23  Aligned_cols=28  Identities=14%  Similarity=0.188  Sum_probs=24.7

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+.||-+.|.|||||||+|++|...++
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999998774

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.40  E-value=0.0023  Score=58.63  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=29.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +|-++|..||||||+++.+.+ ++   +.+++.|.+-.++
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G---~~vidaD~i~~~l   37 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LG---FPVIDADEIAHEL   37 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT----EEEEHHHHHHHC
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CC---CCEECccHHHHHH
Confidence            678999999999999999988 54   7899999876554

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK05439 pantothenate kinase; Provisional

Probab=97.40  E-value=0.00058  Score=67.72  Aligned_cols=42  Identities=21%  Similarity=0.075  Sum_probs=32.5

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHHH
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI  303 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~i  303 (435)
                      ....+.+|.+.|.|||||||+|+.+...+.    +..+.+|+.|.+
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF  127 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF  127 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence            334578999999999999999999987543    234678888865

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.38  E-value=0.00018  Score=55.10  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=24.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      +|+++|.|||||||+++.+.+.+.+.++..++
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~   32 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLD   32 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence            47889999999999999999985222355553

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK09087 hypothetical protein; Validated

Probab=97.37  E-value=0.00051  Score=65.23  Aligned_cols=134  Identities=19%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc--c-CCC--ccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK--V-PGL--LRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~--~-~G~--~~~~~~~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ..++++|.+||||||+++.+++...   +..++.+.+.....  + .+.  +.+..+.. ..      +..+-.++..+.
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~------~~~lf~l~n~~~  114 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSD---ALLIHPNEIGSDAANAAAEGPVLIEDIDAGG-FD------ETGLFHLINSVR  114 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcC---CEEecHHHcchHHHHhhhcCeEEEECCCCCC-CC------HHHHHHHHHHHH
Confidence            4579999999999999999987754   44565543222110  0 000  00000100 00      112334555666


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLANYV  411 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe  411 (435)
                      +.|+.+|+-++...+.... ....++. ...-.++-++.+  ++..+-++++....+-.++++++.-+.+++.
T Consensus       115 ~~g~~ilits~~~p~~~~~-~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~  186 (226)
T PRK09087        115 QAGTSLLMTSRLWPSSWNV-KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME  186 (226)
T ss_pred             hCCCeEEEECCCChHHhcc-ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence            7888888877633222111 1111111 111245566554  3333333333333466789999988887765

>PRK13976 thymidylate kinase; Provisional

Probab=97.31  E-value=0.0046  Score=58.01  Aligned_cols=118  Identities=19%  Similarity=0.109  Sum_probs=61.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCc-c--EEEecc--------HHHHHHhccCCCccCCCChHHHHHHHHHH--HHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEK-R--YILLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRA--NAIFD  334 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~-~--~~~ls~--------D~ir~~~~~~G~~~~~~~~~~~~~~~~~~--~~~~~  334 (435)
                      +|++-|+.||||||.++.+++.+... +  -+++..        ..||+.+  .+.  . ...+.-+.+.=.+  .+.+.
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l--~~~--~-~~~~~~~~llf~a~R~~~~~   76 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLL--LSL--K-NLDKISELLLFIAMRREHFV   76 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHH--cCC--c-CCCHHHHHHHHHHHHHHHHH
Confidence            68899999999999999998776532 1  122221        2233322  110  0 1111111111111  12234


Q ss_pred             HHHHHHhcCCCeEEEeCCCcCHHHHH--------HHHHHHhcC----CcEEEEEECCh-HHHHHHHHHh
Q 013831          335 VLLSRASRTPRNFIIDQTNVFKSARK--------RKLRLFVNF----RKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R~--------~~~~~~~~~----~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ..+.-+++.|..||.|--..+.-..+        .++..+...    .+=.+++++.+ +++++|..+|
T Consensus        77 ~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~  145 (209)
T PRK13976         77 KVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN  145 (209)
T ss_pred             HHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence            45667789999999997433221111        123322221    12345678876 8888887654

>PRK07933 thymidylate kinase; Validated

Probab=97.31  E-value=0.0085  Score=56.33  Aligned_cols=120  Identities=19%  Similarity=0.141  Sum_probs=63.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCcc--EEEec---------cHHHHHHhccCCCccCCCChHH-HHHHH--HHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG---------TNLILEQMKVPGLLRKHNYSER-FQCLM--GRANAIF  333 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls---------~D~ir~~~~~~G~~~~~~~~~~-~~~~~--~~~~~~~  333 (435)
                      +|.+.|+-||||||.++.|.+.+...+  ++.+.         .+.+++.+.  +........+. ...+.  .++. .+
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~--~~~~~~~~~~~~~~llf~a~R~~-~~   78 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALH--GRHGDLADSVYAMATLFALDRAG-AR   78 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHc--CCCCcccCCHHHHHHHHhhhhhh-hH
Confidence            789999999999999999998765321  22111         123443331  21001000111 11111  1111 12


Q ss_pred             HHHHHHHhcCCCeEEEeCCCcCHHH----H---------HHHHHHHhc--CC---cEEEEEECCh-HHHHHHHHHhh
Q 013831          334 DVLLSRASRTPRNFIIDQTNVFKSA----R---------KRKLRLFVN--FR---KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       334 ~~ll~~al~~g~~vIlD~Tn~~~~~----R---------~~~~~~~~~--~~---~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                       ..+.-+++.|..||.|---.+.-.    +         ..++..+..  ..   +-.+++++.+ ++.++|..+|.
T Consensus        79 -~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~  154 (213)
T PRK07933         79 -DELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRA  154 (213)
T ss_pred             -HHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhc
Confidence             235566789999999974332211    1         123333332  11   2356788876 89999998884

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.30  E-value=0.0008  Score=71.03  Aligned_cols=39  Identities=18%  Similarity=0.260  Sum_probs=33.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      ..+|.+.|++||||||+|+.+++.++   +..+++|.+.+.+
T Consensus       284 ~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~~  322 (512)
T PRK13477        284 QPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRAV  322 (512)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehHH
Confidence            57899999999999999999999997   7888887765543

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.25  E-value=0.00091  Score=60.68  Aligned_cols=32  Identities=22%  Similarity=0.423  Sum_probs=25.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ++++.|.|||||||+|.+++..++. .++.|++
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~-~~~~iat   34 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGL-QVLYIAT   34 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCC-CcEeCcC
Confidence            6899999999999999999988653 2455555

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.25  E-value=0.0022  Score=60.82  Aligned_cols=28  Identities=25%  Similarity=0.274  Sum_probs=24.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+.++.+.|++||||||+++.++..++
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4578999999999999999999987765

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.25  E-value=0.003  Score=59.66  Aligned_cols=142  Identities=11%  Similarity=0.047  Sum_probs=67.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ...++++|.||+||||+|+.++...  .+..++.++...+......... ....+-+..+.+-...+..+..++......
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~liiDdi~~l~~~~~~~L~~~~~~~~~~  120 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPE-AELYAVDDVERLDDAQQIALFNLFNRVRAH  120 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhccc-CCEEEEeChhhcCchHHHHHHHHHHHHHHc
Confidence            4578999999999999999998764  2233666766544332210000 000000111111111122333445444455


Q ss_pred             CCe-EEEeCCCcCHHHHHHHHHHHh-cCCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHHHhcc
Q 013831          344 PRN-FIIDQTNVFKSARKRKLRLFV-NFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLANY  410 (435)
Q Consensus       344 g~~-vIlD~Tn~~~~~R~~~~~~~~-~~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m~~~f  410 (435)
                      +.. +|+-.+ ..+.... +...+. .......+.++.+  ++....+.+-..+.+-.++++++..+.+.|
T Consensus       121 ~~~~vl~~~~-~~~~~~~-l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~  189 (227)
T PRK08903        121 GQGALLVAGP-AAPLALP-LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHF  189 (227)
T ss_pred             CCcEEEEeCC-CCHHhCC-CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence            664 555444 3332211 111111 1112245667664  333333333222235668888988888754

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=97.22  E-value=0.0019  Score=66.40  Aligned_cols=37  Identities=14%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      ..|.++|.+||||||+++.|.+ ++   +.+++.|.+..++
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G---~~vidaD~i~~~l   38 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LG---AVVVDADVLAREV   38 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehHHHHHHH
Confidence            4689999999999999999987 44   7789999876553

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.20  E-value=0.004  Score=59.39  Aligned_cols=137  Identities=12%  Similarity=0.034  Sum_probs=68.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH-------HHhc-----cCCCccCCCChHHHHHHHHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL-------EQMK-----VPGLLRKHNYSERFQCLMGRANAI  332 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir-------~~~~-----~~G~~~~~~~~~~~~~~~~~~~~~  332 (435)
                      ..++++|+||+||||+++.++....  +..+..++.+...       +.+.     +..+.......+.|+.       .
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~-------~  118 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEM-------A  118 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHH-------H
Confidence            4689999999999999998775422  2234445544321       1110     0000000000122221       2


Q ss_pred             HHHHHHHHhcCCC-eEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHHHh
Q 013831          333 FDVLLSRASRTPR-NFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLA  408 (435)
Q Consensus       333 ~~~ll~~al~~g~-~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m~~  408 (435)
                      +..++....+.|+ .+|+-.++. +..-......++. ..--.++-+..+  ++.++-++++....+-.++++++.-+.+
T Consensus       119 lf~l~n~~~e~g~~~li~ts~~~-p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~  197 (235)
T PRK08084        119 IFDLYNRILESGRTRLLITGDRP-PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLK  197 (235)
T ss_pred             HHHHHHHHHHcCCCeEEEeCCCC-hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            2234445556665 677766543 3221111122222 111134555443  5555555444444466789999998888


Q ss_pred             ccc
Q 013831          409 NYV  411 (435)
Q Consensus       409 ~fe  411 (435)
                      +++
T Consensus       198 ~~~  200 (235)
T PRK08084        198 RLD  200 (235)
T ss_pred             hhc
Confidence            765

>PRK07429 phosphoribulokinase; Provisional

Probab=97.19  E-value=0.0057  Score=61.27  Aligned_cols=39  Identities=18%  Similarity=0.118  Sum_probs=30.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      .+-+|-++|.+||||||+++.++..++.....+++.|.+
T Consensus         7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~   45 (327)
T PRK07429          7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY   45 (327)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence            467899999999999999999998876433445666654

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.15  E-value=0.0008  Score=62.60  Aligned_cols=155  Identities=14%  Similarity=0.165  Sum_probs=79.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH--HHhcc-CCCccC--C-----CC-hHHH----HHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL--EQMKV-PGLLRK--H-----NY-SERF----QCLMGRAN  330 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir--~~~~~-~G~~~~--~-----~~-~~~~----~~~~~~~~  330 (435)
                      ++|++++|++|+|||.+|-.+++.++   +.+|+.|.+.  .++.+ .|.+..  .     -| ..+.    ....+.+.
T Consensus         1 M~v~~i~GpT~tGKt~~ai~lA~~~g---~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~   77 (233)
T PF01745_consen    1 MKVYLIVGPTGTGKTALAIALAQKTG---APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAH   77 (233)
T ss_dssp             -EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHH
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHhC---CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHH
Confidence            47899999999999999999999987   5677778542  22221 221100  0     01 1100    00111122


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc--CC----cEEEEEECCh--HHHHHHHHHhhhhc--CCCCcH
Q 013831          331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN--FR----KIAVVVFPKP--EDLKIRSVKRFKEM--GKEVPA  400 (435)
Q Consensus       331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~--~~----~~~vv~l~~~--ee~~~R~~~R~~~~--~~~vp~  400 (435)
                      ..+...+.. ...++.+|+....++      ++..+..  |-    ...+.+++.+  +..+.|..+|.++-  ...-..
T Consensus        78 ~~Li~~v~~-~~~~~~~IlEGGSIS------Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~  150 (233)
T PF01745_consen   78 ERLISEVNS-YSAHGGLILEGGSIS------LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGP  150 (233)
T ss_dssp             HHHHHHHHT-TTTSSEEEEEE--HH------HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS-
T ss_pred             HHHHHHHHh-ccccCceEEeCchHH------HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCC
Confidence            222223322 245889999998664      3444432  21    4566666553  67888988887542  223336


Q ss_pred             HHHHHHHhcccCCCCCCCCCCCcccceecc
Q 013831          401 DAVNNMLANYVLPVNKDTPGSDELFDQRRG  430 (435)
Q Consensus       401 ~vi~~m~~~fe~P~~~~~~~~~e~Fd~i~~  430 (435)
                      ..+..+..-|.-|...-......||+.|..
T Consensus       151 Sll~EL~~lW~~p~~r~~ledIdGyr~~i~  180 (233)
T PF01745_consen  151 SLLEELVALWNDPALRPILEDIDGYRYIIR  180 (233)
T ss_dssp             -HHHHHHHHHTSTTHHHHHTTSTTHHHHHH
T ss_pred             cHHHHHHHHHhCccccchHhhhccHHHHHH
Confidence            788888888887765444455666665543

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.13  E-value=0.00096  Score=60.23  Aligned_cols=35  Identities=34%  Similarity=0.461  Sum_probs=27.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~  302 (435)
                      +++++|+|||||||+++.++..+.  +.++.+++.|.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~   38 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT   38 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence            688999999999999999876532  23466777773

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.08  E-value=0.0023  Score=66.11  Aligned_cols=41  Identities=29%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL  304 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir  304 (435)
                      ..+.+|+|+|++||||||.+.+++..+.  ++++.+++.|..|
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R  140 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR  140 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            3478999999999999999999986542  3347788888643

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PHA00729 NTP-binding motif containing protein

Probab=97.05  E-value=0.0055  Score=57.95  Aligned_cols=25  Identities=36%  Similarity=0.420  Sum_probs=22.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ..-|++.|.||+||||+|..++..+
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999875

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.04  E-value=0.012  Score=55.03  Aligned_cols=122  Identities=20%  Similarity=0.181  Sum_probs=66.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccE-EEecc--------HHHHHHhccCCCccCCCChHHHH-HHHHHHH-HHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY-ILLGT--------NLILEQMKVPGLLRKHNYSERFQ-CLMGRAN-AIFD  334 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~-~~ls~--------D~ir~~~~~~G~~~~~~~~~~~~-~~~~~~~-~~~~  334 (435)
                      ..+|.+=|+=||||||.++.+.+.+....+ +++..        ..||+.+ +.+.   ....+.-+ .+....+ +.+.
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~l-l~~~---~~~~~~~e~lLfaadR~~h~~   78 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELL-LNGE---EKLSPKAEALLFAADRAQHLE   78 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHH-cCCc---cCCCHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999887654321 12211        1233222 2221   11112111 1111111 2245


Q ss_pred             HHHHHHhcCCCeEEEeCCCcCHHHHH--------HHHHHHhcC-----CcEEEEEECCh-HHHHHHHHHhh
Q 013831          335 VLLSRASRTPRNFIIDQTNVFKSARK--------RKLRLFVNF-----RKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R~--------~~~~~~~~~-----~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ..+.-++..|..||.|--..+.-.-+        .++..+..+     .+-.+++++.+ ++.++|..+|.
T Consensus        79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~  149 (208)
T COG0125          79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRG  149 (208)
T ss_pred             HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            56777889999999997433222111        122222121     12245678875 99999999984

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.03  E-value=0.0049  Score=60.25  Aligned_cols=36  Identities=11%  Similarity=0.150  Sum_probs=28.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      +|.++|.+||||||+++.++..++.....+++.|.+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence            467899999999999999998876444556666654

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK06893 DNA replication initiation factor; Validated

Probab=97.02  E-value=0.0077  Score=57.23  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..++++|+||+|||++++.++.+
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~   62 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNH   62 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998865

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=97.02  E-value=0.017  Score=53.17  Aligned_cols=113  Identities=19%  Similarity=0.268  Sum_probs=63.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--------------------cC-----CCC-hH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--------------------RK-----HNY-SE  320 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--------------------~~-----~~~-~~  320 (435)
                      .++-+.|-.||||||+++.+. .++   +-+|+.|.+-+++-.+|.+                    +.     .-| ++
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G---~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~   77 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALG---IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDP   77 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcC---CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCH
Confidence            577789999999999999997 444   6688889775544222221                    00     012 11


Q ss_pred             HH-HHHHH-----HHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECChHHHHHHHHHhh
Q 013831          321 RF-QCLMG-----RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKPEDLKIRSVKRF  391 (435)
Q Consensus       321 ~~-~~~~~-----~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~ee~~~R~~~R~  391 (435)
                      .. +.+..     ....++++++...++.-+.+|+|..-+...   .    +.++ +..-+|+|+- ++.++|+.+|+
T Consensus        78 ~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---~----~~~~~~~tvvV~cd~-~~Ql~Rl~~Rd  147 (225)
T KOG3220|consen   78 KKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---K----LLKICHKTVVVTCDE-ELQLERLVERD  147 (225)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---h----HHhheeeEEEEEECc-HHHHHHHHHhc
Confidence            11 11111     122355555555566667888888755322   0    1122 1334456543 45677888884

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=97.01  E-value=0.0042  Score=58.82  Aligned_cols=114  Identities=21%  Similarity=0.249  Sum_probs=66.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS  341 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al  341 (435)
                      ..-++++|.|||||+|+|.++...++   ..+|++-++.+++...+..    .....+..+.+    .....-.+++..+
T Consensus        15 ~~~~v~~G~pg~gkgt~a~~l~~~~~---~~hl~tGdllr~~ia~~te----lg~~~~~~~~~g~lvpDeiv~~~l~~~l   87 (235)
T KOG3078|consen   15 GVRAVLLGAPGSGKGTQAPRLTKNFG---VIHISTGDLLRDEIASGTE----LGKEAKEAIDKGKLVPDEVVVRLLEKRL   87 (235)
T ss_pred             ceEEEEEeCCCCCCCccCHHHHHhcC---CccchhHHHHHHHHhccCc----HHHHHHHHHHhcCcCcHHHHHHHHHhhc
Confidence            34567899999999999999999988   5667775554443334421    11111122211    0111112444444


Q ss_pred             cCC---CeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHh
Q 013831          342 RTP---RNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       342 ~~g---~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ..+   +.+|+|.---+..+...    +.+.+  .-.++.+..| +.+.+|+..|
T Consensus        88 ~~~~~~~~~ildg~Prt~~qa~~----l~~~~~~~d~Vi~l~vp~~~L~~ri~~r  138 (235)
T KOG3078|consen   88 ENPRCQKGFILDGFPRTVQQAEE----LLDRIAQIDLVINLKVPEEVLVDRITGR  138 (235)
T ss_pred             cccccccccccCCCCcchHHHHH----HHHccCCcceEEEecCCHHHHHHHHhcc
Confidence            544   68999984333322221    22322  4467788888 7889999888

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.99  E-value=0.0026  Score=64.88  Aligned_cols=41  Identities=39%  Similarity=0.446  Sum_probs=31.8

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i  303 (435)
                      .+.+.+|+|+||-||||||.+-+|+..+.  ++....++.|..
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~  139 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY  139 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccC
Confidence            34579999999999999999988876543  334667888854

>TIGR00959 ffh signal recognition particle protein

Probab=96.99  E-value=0.0024  Score=66.18  Aligned_cols=40  Identities=38%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNLI  303 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D~i  303 (435)
                      ..+.+++++|+|||||||.|.+++..+   .++++.+++.|..
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~  139 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY  139 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence            347899999999999999998887653   2455778888843

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=96.98  E-value=0.0073  Score=58.80  Aligned_cols=96  Identities=19%  Similarity=0.217  Sum_probs=54.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHH--HhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR--ASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~--al~~  343 (435)
                      +++||+.|++||||||-.+.+. +++   |..+  |.+      +        ..-...+.+        ++..  ....
T Consensus         1 m~~vIiTGlSGaGKs~Al~~lE-D~G---y~cv--DNl------P--------~~Ll~~l~~--------~~~~~~~~~~   52 (284)
T PF03668_consen    1 MELVIITGLSGAGKSTALRALE-DLG---YYCV--DNL------P--------PSLLPQLIE--------LLAQSNSKIE   52 (284)
T ss_pred             CeEEEEeCCCcCCHHHHHHHHH-hcC---eeEE--cCC------c--------HHHHHHHHH--------HHHhcCCCCc
Confidence            5799999999999998877664 344   6665  321      0        000111111        1110  0123


Q ss_pred             CCeEEEeCCCcCHH-HHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 013831          344 PRNFIIDQTNVFKS-ARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       344 g~~vIlD~Tn~~~~-~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~  389 (435)
                      +--+++|.-+..-. .-...+..+.+.+ .+.++|++++ +++++|-++
T Consensus        53 ~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~e  101 (284)
T PF03668_consen   53 KVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSE  101 (284)
T ss_pred             eEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHh
Confidence            45788898543221 1222233333334 7889999996 889888876

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.98  E-value=0.012  Score=63.39  Aligned_cols=143  Identities=11%  Similarity=0.094  Sum_probs=73.2

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhc--c-CCCc-------cCCC--ChHHHHHH--HHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMK--V-PGLL-------RKHN--YSERFQCL--MGRA  329 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~--~-~G~~-------~~~~--~~~~~~~~--~~~~  329 (435)
                      .++|+|.+|+|||+++..++...    ++..++.++.+++...+.  + .+..       +...  .-+..+.+  .+..
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~t  395 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKEST  395 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHH
Confidence            47999999999999999887643    344567787776554432  0 1110       0000  00000000  0011


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHh-cCCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831          330 NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV-NFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNM  406 (435)
Q Consensus       330 ~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~-~~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m  406 (435)
                      +..+-.++......++.+|| .++..+..-..+...+. .+.--.++.+..|  ++.++=++++....+-.++++++.-+
T Consensus       396 qeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yL  474 (617)
T PRK14086        396 QEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFI  474 (617)
T ss_pred             HHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            12233455555677777777 44555543322222222 2222234566554  33333333333334667888888888


Q ss_pred             Hhccc
Q 013831          407 LANYV  411 (435)
Q Consensus       407 ~~~fe  411 (435)
                      ..+++
T Consensus       475 a~r~~  479 (617)
T PRK14086        475 ASRIS  479 (617)
T ss_pred             HHhcc
Confidence            88775

>PRK10867 signal recognition particle protein; Provisional

Probab=96.95  E-value=0.0028  Score=65.81  Aligned_cols=39  Identities=38%  Similarity=0.500  Sum_probs=30.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~i  303 (435)
                      .+.+|+|+|+|||||||++.+++..+.   ++.+.+++.|..
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~  140 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY  140 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            478999999999999998888876431   344778888843

>PRK00023 cmk cytidylate kinase; Provisional

Probab=96.93  E-value=0.005  Score=58.44  Aligned_cols=37  Identities=27%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~  305 (435)
                      ..+|.+.|+|||||||+|+.+++.++   +..++++.+.+
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~---~~~~~~~~~~r   40 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLG---FHYLDTGAMYR   40 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC---CCcccCchhHH
Confidence            36789999999999999999999887   55677776533

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.92  E-value=0.0084  Score=56.26  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=28.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i  303 (435)
                      ...++++|.||+||||+|+.++....  +..++.++.+.+
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~   77 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL   77 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence            56889999999999999999986542  223566665544

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=96.90  E-value=0.00043  Score=72.25  Aligned_cols=52  Identities=31%  Similarity=0.468  Sum_probs=41.5

Q ss_pred             EEec-CCceEeCCC-cccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeeccc
Q 013831          137 GFGG-TGKFSHGGN-FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQ  191 (435)
Q Consensus       137 gy~~-~G~~~~~~~-~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~  191 (435)
                      +|++ +|..+..+. ...||+.|++||+|||.+|...   +..+|++||..+|++|-
T Consensus         2 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~---~~~~~~~~~~~~gi~f~   55 (469)
T KOG1477|consen    2 GYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTIN---GSDFFTKNGPDMGIAFY   55 (469)
T ss_pred             CCcccchhhhhhcccccccCCcCCccccccceEeccC---CceeEEEEcCCcceeee
Confidence            4433 344444332 3579999999999999999998   79999999999999995

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.90  E-value=0.001  Score=56.06  Aligned_cols=37  Identities=32%  Similarity=0.434  Sum_probs=29.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~D~  302 (435)
                      ...++++|+||+||||+++.++..+...  ..+.++.+.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~   40 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED   40 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence            3578999999999999999999887754  366666553

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PHA03132 thymidine kinase; Provisional

Probab=96.90  E-value=0.015  Score=62.13  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=23.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ..+|.+-|.-||||||+++.+.+.+
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~l  281 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGIL  281 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHh
Confidence            5788999999999999999999887

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.88  E-value=0.0018  Score=61.18  Aligned_cols=74  Identities=18%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCcc----CCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR----KHNYSERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~----~~~~~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      +.+++++|.||+||||+|+.+..    + ..+|+.|.....+  .|...    +......|+.+.+...     .++..+
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~----~-~~~~~~d~~~~~l--~g~~~~~v~~~d~~~~~~~~~d~l~-----~~~~~~   79 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG----K-TLVLSFDMSSKVL--IGDENVDIADHDDMPPIQAMVEFYV-----MQNIQA   79 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC----C-CEEEeccccchhc--cCCCCCceeecCCCCCHHHHHHHHH-----HHHhcc
Confidence            56799999999999999998842    1 4677777532222  23211    0111233555544332     223333


Q ss_pred             cCCCeEEEeC
Q 013831          342 RTPRNFIIDQ  351 (435)
Q Consensus       342 ~~g~~vIlD~  351 (435)
                      ..=.+||||.
T Consensus        80 ~~ydtVVIDs   89 (220)
T TIGR01618        80 VKYDNIVIDN   89 (220)
T ss_pred             ccCCEEEEec
Confidence            4456888887

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK06620 hypothetical protein; Validated

Probab=96.87  E-value=0.0076  Score=56.73  Aligned_cols=130  Identities=12%  Similarity=0.209  Sum_probs=66.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC---ccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL---LRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~---~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ..++++|+||+||||+++.++....   ...++.....+.+....+   +.+.   ..|+      ...+-.++..+.+.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~~~~~~~~~~~~~d~lliDdi---~~~~------~~~lf~l~N~~~e~  112 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN---AYIIKDIFFNEEILEKYNAFIIEDI---ENWQ------EPALLHIFNIINEK  112 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC---CEEcchhhhchhHHhcCCEEEEecc---ccch------HHHHHHHHHHHHhc
Confidence            4679999999999999999877654   233332211111100000   0000   1111      01233455555678


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh-HHHHHHHHH-hhhhcCCCCcHHHHHHHHhccc
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP-EDLKIRSVK-RFKEMGKEVPADAVNNMLANYV  411 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~-ee~~~R~~~-R~~~~~~~vp~~vi~~m~~~fe  411 (435)
                      |+.+|+-++-..+.. .  +..+.. .....++-++.| ++.+....+ +....+-.++++++.-+.++++
T Consensus       113 g~~ilits~~~p~~l-~--l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~  180 (214)
T PRK06620        113 QKYLLLTSSDKSRNF-T--LPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLP  180 (214)
T ss_pred             CCEEEEEcCCCcccc-c--hHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Confidence            888888876443321 1  122221 111235566554 333333333 3222355688999888887764

>PRK05642 DNA replication initiation factor; Validated

Probab=96.86  E-value=0.0099  Score=56.68  Aligned_cols=135  Identities=12%  Similarity=0.106  Sum_probs=69.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHHHHHhc-----cC-CC---ccCCC---ChHHHHHHHHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILEQMK-----VP-GL---LRKHN---YSERFQCLMGRANAI  332 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~ir~~~~-----~~-G~---~~~~~---~~~~~~~~~~~~~~~  332 (435)
                      ..++++|.+|+|||++++.++...  .+.+++.++.+.+.....     +. .+   +.+..   -.+.|+       ..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~-------~~  118 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWE-------EA  118 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHH-------HH
Confidence            457899999999999999886432  123467787776543210     00 00   00000   011121       12


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcE---EEEEECC-h-HHHHHHHHHhhhhcCCCCcHHHHHHHH
Q 013831          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKI---AVVVFPK-P-EDLKIRSVKRFKEMGKEVPADAVNNML  407 (435)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~---~vv~l~~-~-ee~~~R~~~R~~~~~~~vp~~vi~~m~  407 (435)
                      +-.++..+...|+.+|+=++.. +..-......+..  +.   .++-++. + ++.++-+++|....+-.++++++.-+.
T Consensus       119 Lf~l~n~~~~~g~~ilits~~~-p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~  195 (234)
T PRK05642        119 LFHLFNRLRDSGRRLLLAASKS-PRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFIL  195 (234)
T ss_pred             HHHHHHHHHhcCCEEEEeCCCC-HHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            3345555567788887777533 3211100111111  22   3344554 3 444444443433335668899998888


Q ss_pred             hccc
Q 013831          408 ANYV  411 (435)
Q Consensus       408 ~~fe  411 (435)
                      .+++
T Consensus       196 ~~~~  199 (234)
T PRK05642        196 TRGT  199 (234)
T ss_pred             HhcC
Confidence            8775

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.85  E-value=0.0024  Score=57.09  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=18.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+++.|++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            689999999999999999988

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=96.83  E-value=0.026  Score=59.08  Aligned_cols=144  Identities=13%  Similarity=0.137  Sum_probs=71.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhc--c-CCCc-------cCCC--ChHHHHHHH--HH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMK--V-PGLL-------RKHN--YSERFQCLM--GR  328 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~--~-~G~~-------~~~~--~~~~~~~~~--~~  328 (435)
                      .-+++.|+||+|||++++.++...    ++..++.++.+.+..++.  + .+..       +...  .-+..+.+.  +.
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~  228 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER  228 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH
Confidence            347899999999999999887653    344466777765543321  0 0000       0000  000001000  00


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHH
Q 013831          329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNN  405 (435)
Q Consensus       329 ~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~  405 (435)
                      .+..+-.++....+.++.+|+-++ ..+..-..+-..+.. +..-.++.++.|  ++..+-++++....+-.++++++..
T Consensus       229 ~~~~l~~~~n~l~~~~~~iiits~-~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~  307 (450)
T PRK00149        229 TQEEFFHTFNALHEAGKQIVLTSD-RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEF  307 (450)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECC-CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            112233344455567777777554 444332211112222 211234566554  4444444444433355688888888


Q ss_pred             HHhccc
Q 013831          406 MLANYV  411 (435)
Q Consensus       406 m~~~fe  411 (435)
                      +.+++.
T Consensus       308 ia~~~~  313 (450)
T PRK00149        308 IAKNIT  313 (450)
T ss_pred             HHcCcC
Confidence            877664

>PRK14974 cell division protein FtsY; Provisional

Probab=96.81  E-value=0.0029  Score=63.57  Aligned_cols=39  Identities=21%  Similarity=0.205  Sum_probs=29.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i  303 (435)
                      .+.+|+++|+||+||||.+.+++..+.  +..+.+++.|..
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~  179 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF  179 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence            478999999999999998887775432  223556777743

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.80  E-value=0.0018  Score=60.12  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~  302 (435)
                      |.+|+|+|++|+||||-+.+++..+.  ++++..++.|.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~   39 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT   39 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence            57999999999999999988875431  44566788874

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.80  E-value=0.0043  Score=56.88  Aligned_cols=139  Identities=15%  Similarity=0.052  Sum_probs=71.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCC-CccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPG-LLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      .+.++++|++||||||+.+.++...+. .+.+.+. |.  .++.+.. ......+........  ....+..++..+++.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie-d~--~E~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~lR~   99 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIE-DT--AELQLPHPNWVRLVTRPGNVEGS--GEVTMADLLRSALRM   99 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC-Cc--cccCCCCCCEEEEEEecCCCCCC--CccCHHHHHHHHhcc
Confidence            578999999999999999999877653 3344442 21  1221110 000000000000000  000122355556677


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYV  411 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe  411 (435)
                      ..++|+=..--.++... .++.+.. +. -+..+...++.+.++|+..+....+...+. +.+.+...+.
T Consensus       100 ~pd~i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~~~~~~~~-~~~~i~~~~d  167 (186)
T cd01130         100 RPDRIIVGEVRGGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPLGRPL-LREQIKEAID  167 (186)
T ss_pred             CCCEEEEEccCcHHHHH-HHHHHhcCCCCceeeecCCCHHHHHHHHHHHHhhcCccHHH-HHHHHHHhCC
Confidence            66666655444555443 4554432 22 344556666778889999886554444444 4444455443

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.79  E-value=0.019  Score=48.60  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ...+++.|.||+||||+++.++...
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999999876

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.78  E-value=0.0041  Score=64.02  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~  308 (435)
                      ..+.|+++|.+||||||+++.|++.++-..+..++.+.+.++++
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~  261 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLG  261 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhc
Confidence            46789999999999999999999986633344566676655543

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.73  E-value=0.037  Score=57.81  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhh----CCCccEEEeccHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQ  306 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~----~~~~~~~~ls~D~ir~~  306 (435)
                      -+++.|.||+|||++++.++..    .++..++.++.+++...
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~  174 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND  174 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            4899999999999999987764    34445667777665444

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=96.69  E-value=0.022  Score=51.14  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=27.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC-CCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH-PEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~-~~~~~~~ls~D~i  303 (435)
                      +++++++|.||+||||+.+...+.+ .   +.+++.-++
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~---~~ivNyG~~   39 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVK---HKIVNYGDL   39 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhh---ceeeeHhHH
Confidence            6899999999999999999888876 3   445555444

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.68  E-value=0.031  Score=57.70  Aligned_cols=144  Identities=15%  Similarity=0.139  Sum_probs=70.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhc--c-CCC-------ccCC--CChHHHHHHH--HH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMK--V-PGL-------LRKH--NYSERFQCLM--GR  328 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~--~-~G~-------~~~~--~~~~~~~~~~--~~  328 (435)
                      ..+++.|.||+|||++++.++.+.    ++..++.++.+.+..++.  + .+.       ++..  ..-+..+.+.  +.
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~  216 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER  216 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence            357899999999999999887543    234566777766543321  0 010       0000  0000000000  01


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHH
Q 013831          329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNN  405 (435)
Q Consensus       329 ~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~  405 (435)
                      .+..+-.++....+.++.+|+-.+ ..+..-..+-..+.. +..-.++.++.|  ++..+-++++....+-.++++++..
T Consensus       217 ~~~~l~~~~n~~~~~~~~iiits~-~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~  295 (405)
T TIGR00362       217 TQEEFFHTFNALHENGKQIVLTSD-RPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEF  295 (405)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEecC-CCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            112233344444566777777543 444432221111221 111134666554  3444334444433456688888888


Q ss_pred             HHhccc
Q 013831          406 MLANYV  411 (435)
Q Consensus       406 m~~~fe  411 (435)
                      +.+++.
T Consensus       296 ia~~~~  301 (405)
T TIGR00362       296 IAKNIR  301 (405)
T ss_pred             HHHhcC
Confidence            877664

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.67  E-value=0.04  Score=53.32  Aligned_cols=23  Identities=39%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .-+++.|+||+||||+|+.+++.
T Consensus        43 ~~vll~GppGtGKTtlA~~ia~~   65 (261)
T TIGR02881        43 LHMIFKGNPGTGKTTVARILGKL   65 (261)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHH
Confidence            44788999999999999999865

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.65  E-value=0.0083  Score=59.94  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i  303 (435)
                      ..+.+++++|+|||||||.+.+++..+.  +.++.+++.|..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            3478999999999999999999986543  234667777753

>PLN03025 replication factor C subunit; Provisional

Probab=96.63  E-value=0.0071  Score=60.37  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++.|+||+||||+|+.+++.+
T Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         37 LILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999875

>PF13245 AAA_19: Part of AAA domain

Probab=96.62  E-value=0.003  Score=49.37  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=16.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWV  287 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~  287 (435)
                      ..++++.|+|||||||.+....
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i   31 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARI   31 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4678889999999996554443

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.60  E-value=0.012  Score=61.10  Aligned_cols=39  Identities=31%  Similarity=0.360  Sum_probs=30.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i  303 (435)
                      .+.+|+|+|+||+||||.+.+++..+.  +....+++.|..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            478999999999999999999986543  234667777753

>PRK08727 hypothetical protein; Validated

Probab=96.58  E-value=0.035  Score=52.86  Aligned_cols=137  Identities=12%  Similarity=0.098  Sum_probs=67.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhc-----cCC--C--ccCCCC---hHHHHHHHHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMK-----VPG--L--LRKHNY---SERFQCLMGRANAI  332 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~-----~~G--~--~~~~~~---~~~~~~~~~~~~~~  332 (435)
                      ..++++|.+|+|||++++.++....  +..++.++.+.....+.     +..  .  +.+..+   .+.++       ..
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~-------~~  114 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDE-------VA  114 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHH-------HH
Confidence            4589999999999999999854421  22345555544322110     000  0  000000   11111       11


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLAN  409 (435)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m~~~  409 (435)
                      +-.++......+..+|+-... .+..-......+.. .....++-++.+  +++.+-+++|....+-.++++++.-+.++
T Consensus       115 lf~l~n~~~~~~~~vI~ts~~-~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~  193 (233)
T PRK08727        115 LFDFHNRARAAGITLLYTARQ-MPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTH  193 (233)
T ss_pred             HHHHHHHHHHcCCeEEEECCC-ChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence            223444444556667776543 33322111222222 111335566654  44444444444333566888888888776


Q ss_pred             cc
Q 013831          410 YV  411 (435)
Q Consensus       410 fe  411 (435)
                      ..
T Consensus       194 ~~  195 (233)
T PRK08727        194 GE  195 (233)
T ss_pred             CC
Confidence            54

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.58  E-value=0.026  Score=59.49  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..++++|+||+||||+|+.+++.+.
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45689999999999999999988754

>CHL00181 cbbX CbbX; Provisional

Probab=96.57  E-value=0.024  Score=55.85  Aligned_cols=38  Identities=24%  Similarity=0.222  Sum_probs=27.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC------CccEEEeccHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLIL  304 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~------~~~~~~ls~D~ir  304 (435)
                      .-+++.|+||+||||+|+.++..+.      ...++.++.+.+.
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~  103 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV  103 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence            4478899999999999999976531      1125667666543

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.036  Score=55.90  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=29.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      +=++|+|+||+|||-+|+.++.+.. ..++.||.-.+
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~-tTFFNVSsstl  281 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECG-TTFFNVSSSTL  281 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhc-CeEEEechhhh
Confidence            4689999999999999999998876 34666766544

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.55  E-value=0.035  Score=50.03  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccH--------HHHHHhcc-CCCccCCCCh-HHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN--------LILEQMKV-PGLLRKHNYS-ERFQCLMGRANAIFD  334 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D--------~ir~~~~~-~G~~~~~~~~-~~~~~~~~~~~~~~~  334 (435)
                      .+++.++|++||||||+.+.++...+. .+-+.++..        .++..+.. ...  ...+. ..++.+...-++..-
T Consensus        28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~--~~~~~~t~~e~lLS~G~~~rl  105 (171)
T cd03228          28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQD--PFLFSGTIRENILSGGQRQRI  105 (171)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCC--chhccchHHHHhhCHHHHHHH
Confidence            578999999999999999999876542 223333321        11122111 111  01111 111211111111111


Q ss_pred             HHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHH
Q 013831          335 VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDL  383 (435)
Q Consensus       335 ~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~  383 (435)
                      .++...+.....+|+|.  ..+++..+..+++.+.... ..+++++.-. +++
T Consensus       106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  158 (171)
T cd03228         106 AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI  158 (171)
T ss_pred             HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence            23334457788999997  5788888888777777643 4555555433 443

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13173 AAA_14: AAA domain

Probab=96.53  E-value=0.018  Score=49.30  Aligned_cols=92  Identities=14%  Similarity=0.235  Sum_probs=51.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      +++++.|+.++||||+++++++.+. ..+++.++-|..+....              . ..+    ..+.+.+.......
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~--------------~-~~~----~~~~~~~~~~~~~~   63 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL--------------A-DPD----LLEYFLELIKPGKK   63 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH--------------h-hhh----hHHHHHHhhccCCc
Confidence            6899999999999999999997754 22355565544322100              0 000    01112222123566


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEEC
Q 013831          346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFP  378 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~  378 (435)
                      .++||.-+..+.... .++.+.+.. ...+++.-
T Consensus        64 ~i~iDEiq~~~~~~~-~lk~l~d~~~~~~ii~tg   96 (128)
T PF13173_consen   64 YIFIDEIQYLPDWED-ALKFLVDNGPNIKIILTG   96 (128)
T ss_pred             EEEEehhhhhccHHH-HHHHHHHhccCceEEEEc
Confidence            899998766665444 345444433 45555443

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.53  E-value=0.0025  Score=62.73  Aligned_cols=40  Identities=23%  Similarity=0.125  Sum_probs=29.7

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNL  302 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~  302 (435)
                      .+.+.+|-++|++||||||+|+.+...+.    ...+.+++.|.
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~  102 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG  102 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence            34578999999999999999988754432    22366777774

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.51  E-value=0.0088  Score=58.02  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=24.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      .-+++.|.||+|||++|+.+++.++ ..++.++
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg-~~~~~i~   53 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRD-RPVMLIN   53 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhC-CCEEEEe
Confidence            3467899999999999999998764 3355553

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=96.51  E-value=0.041  Score=53.07  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=24.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+||++-|.-|||||++|+.+++++.
T Consensus        71 SkvI~VeGnI~sGK~klAKelAe~Lg   96 (393)
T KOG3877|consen   71 SKVIVVEGNIGSGKTKLAKELAEQLG   96 (393)
T ss_pred             ceEEEEeCCcccCchhHHHHHHHHhC
Confidence            58999999999999999999999986

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.50  E-value=0.025  Score=53.36  Aligned_cols=137  Identities=20%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHh----hCCCccEEEeccHHHHHHhc--c-CCC-------ccCC---------CChHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVK----DHPEKRYILLGTNLILEQMK--V-PGL-------LRKH---------NYSERFQ  323 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~----~~~~~~~~~ls~D~ir~~~~--~-~G~-------~~~~---------~~~~~~~  323 (435)
                      ..+++.|.+|+|||++.+.++.    ..++.+++.++.+++.+.+.  + .+.       ++..         ..... .
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~-~  113 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK-Q  113 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH-H
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc-h
Confidence            3468899999999999888764    34566678888766543321  0 010       0000         00110 1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHH---HHHHHHHHHhcCCcEEEEEECCh--HHHHHHHHHhhhhcCCCC
Q 013831          324 CLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKS---ARKRKLRLFVNFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEV  398 (435)
Q Consensus       324 ~~~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~---~R~~~~~~~~~~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~v  398 (435)
                          ..+..+-.++......|+.+|+-....-.+   ...++...+..  . .++-+..|  ++..+=++++....+-.+
T Consensus       114 ----~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~--G-l~~~l~~pd~~~r~~il~~~a~~~~~~l  186 (219)
T PF00308_consen  114 ----RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW--G-LVVELQPPDDEDRRRILQKKAKERGIEL  186 (219)
T ss_dssp             ----HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC--S-EEEEE----HHHHHHHHHHHHHHTT--S
T ss_pred             ----HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh--c-chhhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence                112233445555567777777665221111   11222222221  1 22344443  333333333444446779


Q ss_pred             cHHHHHHHHhccc
Q 013831          399 PADAVNNMLANYV  411 (435)
Q Consensus       399 p~~vi~~m~~~fe  411 (435)
                      |+++++-+.+++.
T Consensus       187 ~~~v~~~l~~~~~  199 (219)
T PF00308_consen  187 PEEVIEYLARRFR  199 (219)
T ss_dssp             -HHHHHHHHHHTT
T ss_pred             cHHHHHHHHHhhc
Confidence            9999999988874

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.47  E-value=0.011  Score=55.85  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=25.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .=+++.|+||.||||+|+-++.+... .+..+|.
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~-~~~~~sg   83 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGV-NFKITSG   83 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT---EEEEEC
T ss_pred             ceEEEECCCccchhHHHHHHHhccCC-CeEeccc
Confidence            35789999999999999999999863 3545543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.47  E-value=0.031  Score=50.49  Aligned_cols=112  Identities=14%  Similarity=0.155  Sum_probs=61.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEecc--------HHHHHHhcc-CCCccCCCCh-HHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT--------NLILEQMKV-PGLLRKHNYS-ERFQCLMGRANAIFD  334 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~--------D~ir~~~~~-~G~~~~~~~~-~~~~~~~~~~~~~~~  334 (435)
                      .+++.++|++||||||+.+.++...+ ..+-+.++.        ..++..+.. ...  ...+. ...+.+...-++..-
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~--~~~~~~tv~~~lLS~G~~qrv  105 (173)
T cd03246          28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQD--DELFSGSIAENILSGGQRQRL  105 (173)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCC--CccccCcHHHHCcCHHHHHHH
Confidence            57899999999999999999987653 222333332        122222211 111  00111 111111110111111


Q ss_pred             HHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECC
Q 013831          335 VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPK  379 (435)
Q Consensus       335 ~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~  379 (435)
                      .++...+.....+|+|-  +.+++..|...++.+....  ..+++++.-
T Consensus       106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh  154 (173)
T cd03246         106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH  154 (173)
T ss_pred             HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            23334457788999997  6788888888777776542  356666544

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=96.41  E-value=0.033  Score=61.24  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=33.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      ..+|.+.|++||||||+|+.+++.++   +..++++.+.+.+
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~---~~~~~~~~~~~~~  480 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALG---YHYLDSGALYRLT  480 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhC---CeEecHHHhhhHH
Confidence            44788899999999999999999987   7789888876654

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.38  E-value=0.017  Score=58.10  Aligned_cols=140  Identities=16%  Similarity=0.143  Sum_probs=74.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc-cEEEeccHHHHHHhccCCCccCCC-ChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLGTNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~-~~~~ls~D~ir~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ...|+++|.+||||||+.+.+....+.. +.+.+  ++. .++.+........ ......  .....-.+..+++.+++.
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti--Ed~-~El~l~~~~n~~~~~~~~~~--~~~~~~~~~~ll~~~LR~  234 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITV--EDA-REIVLSNHPNRVHLLASKGG--QGRAKVTTQDLIEACLRL  234 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe--cCC-CccccccCCCEEEEEecCCC--CCcCcCcHHHHHHHHhcc
Confidence            4578999999999999999999887742 33333  221 1222111000000 000000  000011234467777787


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHH-hccc
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNML-ANYV  411 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~-~~fe  411 (435)
                      .-++|+=.---..+... +++.+..-+  -++.+..+++.+.+.|+.......+..++.+.+.++. ..+.
T Consensus       235 ~PD~IivGEiR~~ea~~-~l~a~~tGh~G~~tTiHa~s~~~ai~Rl~~~~~~~~~~~~~~~~~~~i~~~iD  304 (332)
T PRK13900        235 RPDRIIVGELRGAEAFS-FLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVD  304 (332)
T ss_pred             CCCeEEEEecCCHHHHH-HHHHHHcCCCcEEEEEecCCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCC
Confidence            77655554333444332 444444333  3566777777778889887655445556766665554 4443

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.36  E-value=0.0025  Score=64.24  Aligned_cols=26  Identities=15%  Similarity=0.304  Sum_probs=23.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .++++++|+|||||||+|+.|++.+.
T Consensus        78 r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            58899999999999999999998764

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=96.36  E-value=0.0087  Score=55.10  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      .-||-+.|...|||||+|+.+.+-+++  ..+|+.|++.
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~~--~~lIhqDDFy   40 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFPG--CSLIHQDDFY   40 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHccC--Ceeecccccc
Confidence            346778899999999999999999987  4577888764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.35  E-value=0.045  Score=52.70  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=23.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++++|.||+||||+++.++..+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            45889999999999999999998865

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.34  E-value=0.038  Score=54.60  Aligned_cols=113  Identities=12%  Similarity=0.179  Sum_probs=67.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH--hcc----------CCCccC-CC-ChHHHH----HHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ--MKV----------PGLLRK-HN-YSERFQ----CLMG  327 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~--~~~----------~G~~~~-~~-~~~~~~----~~~~  327 (435)
                      -+||++.|..|||||-+|-.|+.+++   ..+|+.|.+--.  +.+          .|.+.. .. ..+..+    ....
T Consensus         7 ~KVvvI~G~TGsGKSrLaVdLA~rf~---~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~   83 (348)
T KOG1384|consen    7 DKVVVIMGATGAGKSRLAVDLATRFP---GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED   83 (348)
T ss_pred             ceEEEEecCCCCChhhhHHHHHHhCC---ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence            57999999999999999999999988   568888753110  000          010000 00 011111    1112


Q ss_pred             HHHHHHHHHHHHHhcCCC-eEEEeCCCcCHHHHHHHHHHHhc-------------------C-CcEEEEEECCh-HHHHH
Q 013831          328 RANAIFDVLLSRASRTPR-NFIIDQTNVFKSARKRKLRLFVN-------------------F-RKIAVVVFPKP-EDLKI  385 (435)
Q Consensus       328 ~~~~~~~~ll~~al~~g~-~vIlD~Tn~~~~~R~~~~~~~~~-------------------~-~~~~vv~l~~~-ee~~~  385 (435)
                      .+.    ..++...++|+ ++|+=.||.+-..   +   +.+                   . .+.++++++++ .++-+
T Consensus        84 ~a~----~aie~I~~rgk~PIv~GGs~~yi~a---l---~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~  153 (348)
T KOG1384|consen   84 DAS----RAIEEIHSRGKLPIVVGGSNSYLQA---L---LSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFE  153 (348)
T ss_pred             HHH----HHHHHHHhCCCCCEEeCCchhhHHH---H---hhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHH
Confidence            222    24444456666 6777789885321   1   222                   0 13678899887 78999


Q ss_pred             HHHHhh
Q 013831          386 RSVKRF  391 (435)
Q Consensus       386 R~~~R~  391 (435)
                      |+.+|.
T Consensus       154 ~l~~RV  159 (348)
T KOG1384|consen  154 RLDKRV  159 (348)
T ss_pred             HHHHHH
Confidence            999995

>PRK08116 hypothetical protein; Validated

Probab=96.32  E-value=0.034  Score=54.20  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=30.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~  307 (435)
                      .-+++.|.||+|||++|..++..+-  +..++.++..++...+
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i  157 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI  157 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            4589999999999999999887642  3346667766665544

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.31  E-value=0.0026  Score=62.44  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      +|+++|++|||||++|..+++.++   ..+||.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~---~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLN---AEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCC---CcEEEechh
Confidence            589999999999999999999987   457888863

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.29  E-value=0.065  Score=56.20  Aligned_cols=26  Identities=27%  Similarity=0.240  Sum_probs=23.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..++++|+||+||||+|+.+++.+.
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Ln   65 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLN   65 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56789999999999999999998865

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.26  E-value=0.08  Score=48.67  Aligned_cols=56  Identities=21%  Similarity=0.270  Sum_probs=37.3

Q ss_pred             HHHHHh-cCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhh
Q 013831          336 LLSRAS-RTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF  391 (435)
Q Consensus       336 ll~~al-~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~  391 (435)
                      .|.+|+ .+....|-|-  .|+++..-.++|++|.+..  ..+|+.-.-+.++..+..+|.
T Consensus       147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv  207 (223)
T COG2884         147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV  207 (223)
T ss_pred             HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence            344454 4455666664  7999998888899998865  345554444577777776664

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.016  Score=58.31  Aligned_cols=101  Identities=22%  Similarity=0.162  Sum_probs=60.3

Q ss_pred             CCCCcceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEeccHHHH----HHhccCCCccCC----CChHHHHHHHHHHH
Q 013831          261 CNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLIL----EQMKVPGLLRKH----NYSERFQCLMGRAN  330 (435)
Q Consensus       261 ~~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls~D~ir----~~~~~~G~~~~~----~~~~~~~~~~~~~~  330 (435)
                      +.+..+.||+++||-||||||...+++-.+..++  ...+..|.+|    +++..++.-...    .|++.  .....+.
T Consensus        96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~--dpv~ia~  173 (483)
T KOG0780|consen   96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEA--DPVKIAS  173 (483)
T ss_pred             cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEeccccc--chHHHHH
Confidence            3556789999999999999999988887665433  4466777664    344322210011    11111  1222222


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHh
Q 013831          331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV  367 (435)
Q Consensus       331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~  367 (435)
                          +-+++.-+.+.++||-+|.-...+-..+++...
T Consensus       174 ----egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~  206 (483)
T KOG0780|consen  174 ----EGVDRFKKENFDVIIVDTSGRHKQEASLFEEMK  206 (483)
T ss_pred             ----HHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHH
Confidence                345566688888888888776655555555444

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=96.24  E-value=0.074  Score=55.63  Aligned_cols=38  Identities=18%  Similarity=0.263  Sum_probs=27.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL  304 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir  304 (435)
                      .-+++.|.||+|||++++.++....  +..++.++.+.+.
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~  181 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT  181 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence            3467899999999999999886532  3446677776543

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.24  E-value=0.075  Score=47.94  Aligned_cols=113  Identities=14%  Similarity=0.130  Sum_probs=61.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccH-------HHHHHhcc-CCCccCCCCh--HHHHHH-HHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN-------LILEQMKV-PGLLRKHNYS--ERFQCL-MGRANAIF  333 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D-------~ir~~~~~-~G~~~~~~~~--~~~~~~-~~~~~~~~  333 (435)
                      .+++.++|++||||||+.+.++...+ ..+-+.++..       .++..... ....  ..+.  ...+.+ ...-++..
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~--~~~~~~tv~~~~~LS~G~~qr  103 (173)
T cd03230          26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEP--SLYENLTVRENLKLSGGMKQR  103 (173)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCC--ccccCCcHHHHhhcCHHHHHH
Confidence            57899999999999999999987653 2222333221       11111111 1110  0111  111211 10001111


Q ss_pred             HHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 013831          334 DVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP  380 (435)
Q Consensus       334 ~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~  380 (435)
                      -.++...+.....+|+|-  ++++...|...++.+....  ..+++++.-.
T Consensus       104 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~  154 (173)
T cd03230         104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI  154 (173)
T ss_pred             HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            123333456788999996  7788888888888777653  3566666443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.17  E-value=0.026  Score=56.00  Aligned_cols=97  Identities=22%  Similarity=0.162  Sum_probs=57.5

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH----HHhccCCC------cc-CCCChHHHHHHHHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL----EQMKVPGL------LR-KHNYSERFQCLMGRA  329 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir----~~~~~~G~------~~-~~~~~~~~~~~~~~~  329 (435)
                      .+.+-+|+++|..|+||||-+.+++..+.  ++++++...|.+|    ++|.+.|.      .. .+.-.+.        
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA--------  207 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA--------  207 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH--------
Confidence            34589999999999999998888876543  3446666668775    34432221      01 1111111        


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc
Q 013831          330 NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN  368 (435)
Q Consensus       330 ~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~  368 (435)
                       ......++.|..++.+|||=+|--...-...+|..+.+
T Consensus       208 -aVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~K  245 (340)
T COG0552         208 -AVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKK  245 (340)
T ss_pred             -HHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHH
Confidence             11223556666788877776665554444555665543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.15  E-value=0.076  Score=48.40  Aligned_cols=108  Identities=18%  Similarity=0.218  Sum_probs=56.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCc------------cEEEeccHHHHHHhccCCC-ccCC--CChHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK------------RYILLGTNLILEQMKVPGL-LRKH--NYSERFQCLMGRA  329 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~------------~~~~ls~D~ir~~~~~~G~-~~~~--~~~~~~~~~~~~~  329 (435)
                      ..+++.++|++||||||+.+.+....+..            ....+....+.+.+.+... ....  ....  .. .+++
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSg--Gq-~qrl   96 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSG--GE-LQRV   96 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCH--HH-HHHH
Confidence            35789999999999999999886321110            0111111112233322111 1110  0111  00 0111


Q ss_pred             HHHHHHHHHHHhcC--CCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 013831          330 NAIFDVLLSRASRT--PRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP  380 (435)
Q Consensus       330 ~~~~~~ll~~al~~--g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~  380 (435)
                           .+....+..  ...+|+|-  .++++..++.+++.+....  ..+++++.-.
T Consensus        97 -----~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~  148 (176)
T cd03238          97 -----KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN  148 (176)
T ss_pred             -----HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence                 133333456  68899996  7788888887777666532  4566666543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.14  E-value=0.005  Score=53.30  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.9

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ||++|+||+|||++|+.+++.+..
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~   25 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGR   25 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhc
Confidence            689999999999999999988853

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK15453 phosphoribulokinase; Provisional

Probab=96.11  E-value=0.0052  Score=59.94  Aligned_cols=39  Identities=13%  Similarity=0.143  Sum_probs=30.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir  304 (435)
                      ..+|.++|.|||||||+|+.++..+..  ....+++.|...
T Consensus         5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            568999999999999999999875542  235677777653

>PRK12377 putative replication protein; Provisional

Probab=96.11  E-value=0.057  Score=51.98  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=59.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      .-+++.|.||+|||++|..++..+.  +..++.++..+++..+.. .      +... +        ....++ ..+..-
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~-~------~~~~-~--------~~~~~l-~~l~~~  164 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE-S------YDNG-Q--------SGEKFL-QELCKV  164 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH-H------Hhcc-c--------hHHHHH-HHhcCC
Confidence            5689999999999999999886643  233556666666555421 0      0000 0        001122 224677


Q ss_pred             CeEEEeCC---CcCHHHHHHHHHHHhc-CC-cEEEEEECC-h-HHHHHHHHH
Q 013831          345 RNFIIDQT---NVFKSARKRKLRLFVN-FR-KIAVVVFPK-P-EDLKIRSVK  389 (435)
Q Consensus       345 ~~vIlD~T---n~~~~~R~~~~~~~~~-~~-~~~vv~l~~-~-ee~~~R~~~  389 (435)
                      ..+|||+-   ..+......++..+.. |. ...+++... . +++.++...
T Consensus       165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~  216 (248)
T PRK12377        165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGE  216 (248)
T ss_pred             CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhH
Confidence            78999986   3444555544545543 43 344445433 3 666554433

>PRK13695 putative NTPase; Provisional

Probab=96.08  E-value=0.056  Score=48.77  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+++|.||+||||+++.+...+
T Consensus         3 i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          3 IGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999976543

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.08  E-value=0.035  Score=54.52  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=25.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC------CccEEEeccHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLIL  304 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~------~~~~~~ls~D~ir  304 (435)
                      -+++.|+||+||||+|+.+++.+.      ...++.++.+++.
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~  102 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV  102 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence            478899999999999977765432      1126667665554

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PLN02840 tRNA dimethylallyltransferase

Probab=95.99  E-value=0.0066  Score=62.48  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ..+|+++|++||||||+|..|++.++.   .+|+.|.
T Consensus        21 ~~vi~I~GptgsGKTtla~~La~~~~~---~iis~Ds   54 (421)
T PLN02840         21 EKVIVISGPTGAGKSRLALELAKRLNG---EIISADS   54 (421)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHCCC---CeEeccc
Confidence            568999999999999999999999873   4566664

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.98  E-value=0.055  Score=53.91  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.|+||+||||+|+.+++...
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999988753

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.94  E-value=0.0069  Score=52.60  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=24.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+|++.|..||||||+++.+++.++
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999999876

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.92  E-value=0.0069  Score=55.02  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=24.5

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+.++.++|.+||||||+++++...+.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            3467999999999999999999997765

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.92  E-value=0.16  Score=45.97  Aligned_cols=117  Identities=15%  Similarity=0.113  Sum_probs=62.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHH-------HHHHhccCCCccCCCCh-HHHHHHHHH---HHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNL-------ILEQMKVPGLLRKHNYS-ERFQCLMGR---ANAIF  333 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~-------ir~~~~~~G~~~~~~~~-~~~~~~~~~---~~~~~  333 (435)
                      .+++.++|++||||||+.+.++...+ ..+-+.++...       +++.+..... ....+. ..++.+...   -++..
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q-~~~~~~~tv~~~i~~~LS~G~~qr  106 (178)
T cd03247          28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQ-RPYLFDTTLRNNLGRRFSGGERQR  106 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEcc-CCeeecccHHHhhcccCCHHHHHH
Confidence            57899999999999999999987754 22234443211       1222211110 000111 111111000   01111


Q ss_pred             HHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC-cEEEEEECC-hHHH
Q 013831          334 DVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPK-PEDL  383 (435)
Q Consensus       334 ~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~-~ee~  383 (435)
                      -.++...+.....+|+|.  +.++...++..++.+.... ..+++++.. .+.+
T Consensus       107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  160 (178)
T cd03247         107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI  160 (178)
T ss_pred             HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence            123334467888999997  6788888888777776643 455666543 3443

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.89  E-value=0.056  Score=49.11  Aligned_cols=107  Identities=17%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC-CccEEEecc--------HHHHHHhc-------cCCCc---cCC--CChHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT--------NLILEQMK-------VPGLL---RKH--NYSERFQ  323 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~--------D~ir~~~~-------~~G~~---~~~--~~~~~~~  323 (435)
                      ..+++.++|++||||||+.+.++...+ ..+-+.++.        ..++..+.       ..|..   ...  ....-  
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G--  101 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG--  101 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH--
Confidence            368899999999999999999987653 222333321        11111111       01110   000  00000  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECC
Q 013831          324 CLMGRANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPK  379 (435)
Q Consensus       324 ~~~~~~~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~  379 (435)
                          +  +..-.++...+.....+|+|-  .+++...++..++.+..+.   ...++++.-
T Consensus       102 ----~--~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh  156 (180)
T cd03214         102 ----E--RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH  156 (180)
T ss_pred             ----H--HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                0  001113334457888999996  5778888888777776542   345555543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.88  E-value=0.02  Score=55.61  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=57.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ..+|+++|.+||||||+.+.+....+.  .+.+.|  ++-. ++.+.+... .....       .....+..++..+++.
T Consensus        80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti--Edp~-E~~~~~~~q-~~v~~-------~~~~~~~~~l~~~lR~  148 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV--EDPV-EYQIPGINQ-VQVNE-------KAGLTFARGLRAILRQ  148 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE--CCCc-eecCCCceE-EEeCC-------cCCcCHHHHHHHHhcc
Confidence            358999999999999999988776642  233333  2111 122222110 00000       0001233456666777


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHH
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVK  389 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~  389 (435)
                      +-++|+=.---.++.-...++.+..-+ -++.+.-++....+.|+..
T Consensus       149 ~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~ai~Rl~~  195 (264)
T cd01129         149 DPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDAPGAITRLLD  195 (264)
T ss_pred             CCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHHHHHHH
Confidence            766555543334443332344433322 2334455556777888864

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.88  E-value=0.14  Score=46.96  Aligned_cols=113  Identities=12%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccHH----HHHHhcc-CCCccCCCChHHHHHHH------HH--H
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNL----ILEQMKV-PGLLRKHNYSERFQCLM------GR--A  329 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D~----ir~~~~~-~G~~~~~~~~~~~~~~~------~~--~  329 (435)
                      .+++.++|++||||||+.+.++...   +...-+.+....    +++.+.. .....-.......+.+.      +.  -
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgG  112 (192)
T cd03232          33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE  112 (192)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHH
Confidence            5899999999999999999998642   223334443211    2222211 11000000001111111      00  0


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEEC
Q 013831          330 NAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFP  378 (435)
Q Consensus       330 ~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~  378 (435)
                      ++..-.++.+.+.....+|+|-  +.++...+..+++.+.++.  ..+++++.
T Consensus       113 e~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivt  165 (192)
T cd03232         113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI  165 (192)
T ss_pred             HhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence            0111123334456778888886  6677888887777776542  35555553

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.038  Score=57.77  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             cccccccC---CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHH
Q 013831          254 SVLGPTFC---NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN  330 (435)
Q Consensus       254 ~~~~p~~~---~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~  330 (435)
                      +|.+|..-   .-++.+=|+|-|+||.|||-+||++-+.++++.-.+++--+|..++  .|                +..
T Consensus       241 RvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KY--VG----------------eSE  302 (744)
T KOG0741|consen  241 RVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKY--VG----------------ESE  302 (744)
T ss_pred             hcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHh--hc----------------ccH
Confidence            45555542   2345678999999999999999999887765444456555555443  12                222


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831          331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFKEMGKEVPADAVNNMLAN  409 (435)
Q Consensus       331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~  409 (435)
                      ...+.+..           |+   ..+     ++........++|.++- +..|++|=..+   ++..|-+.|+.++..+
T Consensus       303 ~NvR~LFa-----------DA---EeE-----~r~~g~~SgLHIIIFDEiDAICKqRGS~~---g~TGVhD~VVNQLLsK  360 (744)
T KOG0741|consen  303 ENVRKLFA-----------DA---EEE-----QRRLGANSGLHIIIFDEIDAICKQRGSMA---GSTGVHDTVVNQLLSK  360 (744)
T ss_pred             HHHHHHHH-----------hH---HHH-----HHhhCccCCceEEEehhhHHHHHhcCCCC---CCCCccHHHHHHHHHh
Confidence            22333332           11   111     22222222678888865 47888775554   3467889999999887


Q ss_pred             cc
Q 013831          410 YV  411 (435)
Q Consensus       410 fe  411 (435)
                      +.
T Consensus       361 mD  362 (744)
T KOG0741|consen  361 MD  362 (744)
T ss_pred             cc
Confidence            74

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.83  E-value=0.047  Score=54.76  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+.|+++|.||+||||+++.++..++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~  187 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFN  187 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            35789999999999999999998865

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PLN02748 tRNA dimethylallyltransferase

Probab=95.83  E-value=0.0091  Score=62.47  Aligned_cols=35  Identities=20%  Similarity=0.393  Sum_probs=31.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ...+|+++|++||||||+|..++..++   ..+||.|.
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~---~eii~~Ds   55 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFP---VEIINADS   55 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC---eeEEcCch
Confidence            356899999999999999999999987   67889885

>PF05729 NACHT: NACHT domain

Probab=95.82  E-value=0.0059  Score=53.74  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++++.|.||+||||+++.++..+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHH
Confidence            478999999999999999988654

>COG3911 Predicted ATPase [General function prediction only]

Probab=95.80  E-value=0.055  Score=47.68  Aligned_cols=42  Identities=19%  Similarity=0.230  Sum_probs=31.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      ..+++|+.|-||+||||+.+.|++.--. .+....+|.|+++-
T Consensus         8 R~~~fIltGgpGaGKTtLL~aLa~~Gfa-tvee~~r~ii~~es   49 (183)
T COG3911           8 RHKRFILTGGPGAGKTTLLAALARAGFA-TVEEAGRDIIALES   49 (183)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHcCce-eeccchhhHHHHHH
Confidence            3579999999999999999999876431 13456667776653

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.78  E-value=0.0068  Score=56.59  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      ..+++.++|++||||||+.|.+..
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            468999999999999999999875

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.78  E-value=0.12  Score=46.71  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=59.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccH----------HHHHHhcc-CCCccCCCChHHHHHHH---HHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN----------LILEQMKV-PGLLRKHNYSERFQCLM---GRAN  330 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D----------~ir~~~~~-~G~~~~~~~~~~~~~~~---~~~~  330 (435)
                      .+++.++|++||||||+++.++..++. .+-+.+...          .+++.... .............+.+.   ..-+
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~  105 (178)
T cd03229          26 GEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQ  105 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHH
Confidence            578999999999999999999876542 222333211          11111111 11000000001111110   0001


Q ss_pred             HHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECC
Q 013831          331 AIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPK  379 (435)
Q Consensus       331 ~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~  379 (435)
                      +..-.++.+.+...+.+|+|-  ++++...+...++.+....   ..+++++.-
T Consensus       106 ~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH  159 (178)
T cd03229         106 QQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH  159 (178)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            111123334457788999996  7788888888777776542   255655543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.75  E-value=0.032  Score=50.89  Aligned_cols=43  Identities=21%  Similarity=0.382  Sum_probs=30.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHHHHHhc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILEQMK  308 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~ir~~~~  308 (435)
                      .+=+++.|.||+|||++|..++.+.  .+..+..++..++++++.
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~   91 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK   91 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence            3568999999999999998887532  223356677788777764

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.032  Score=54.45  Aligned_cols=37  Identities=14%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      +-|+|-|+||.|||.+|+..+-+-+. .+..+|+.+++
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnS-TFFSvSSSDLv  203 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLV  203 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCC-ceEEeehHHHH
Confidence            46899999999999999999987653 37777765543

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.74  E-value=0.0064  Score=51.70  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +..++++.|.||+||||+++.+++.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999875

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.73  E-value=0.19  Score=43.99  Aligned_cols=97  Identities=13%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      .+++.+.|.+||||||+.+.++...+. ..-+.+...   ..+   +...+  ......   +++     .++...+.+.
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---~~i---~~~~~--lS~G~~---~rv-----~laral~~~p   89 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---VKI---GYFEQ--LSGGEK---MRL-----ALAKLLLENP   89 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---EEE---EEEcc--CCHHHH---HHH-----HHHHHHhcCC
Confidence            578999999999999999999877542 222333210   011   10000  111101   111     1333345778


Q ss_pred             CeEEEeC--CCcCHHHHHHHHHHHhcCCcEEEEEECC
Q 013831          345 RNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPK  379 (435)
Q Consensus       345 ~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~  379 (435)
                      ..+|+|.  .+++...+..+++.++... .+++++.-
T Consensus        90 ~illlDEP~~~LD~~~~~~l~~~l~~~~-~til~~th  125 (144)
T cd03221          90 NLLLLDEPTNHLDLESIEALEEALKEYP-GTVILVSH  125 (144)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHcC-CEEEEEEC
Confidence            8999997  6788888888777777653 45555543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=95.72  E-value=0.053  Score=55.04  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=26.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ..=.|+-|+||+||||+|+-++..... .+..+|.
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~-~f~~~sA   81 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNA-AFEALSA   81 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCC-ceEEecc
Confidence            444678999999999999999987653 3555654

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=95.71  E-value=0.029  Score=57.68  Aligned_cols=38  Identities=18%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      +.-|+++|+||+|||++|+.++..+.. .++.++...+.
T Consensus       165 p~gvLL~GppGtGKT~lAkaia~~~~~-~~i~v~~~~l~  202 (389)
T PRK03992        165 PKGVLLYGPPGTGKTLLAKAVAHETNA-TFIRVVGSELV  202 (389)
T ss_pred             CCceEEECCCCCChHHHHHHHHHHhCC-CEEEeehHHHh
Confidence            456899999999999999999988763 36666554443

>PRK13342 recombination factor protein RarA; Reviewed

Probab=95.71  E-value=0.12  Score=53.67  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=24.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      .-+++.|+||+||||+|+.+++.... .++.++
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~~~-~~~~l~   68 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGATDA-PFEALS   68 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEe
Confidence            35677999999999999999987652 355554

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.043  Score=54.21  Aligned_cols=26  Identities=19%  Similarity=0.446  Sum_probs=23.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .++|++.|+||.|||++.+.++..+.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            57999999999999999999998764

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.70  E-value=0.01  Score=57.92  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=30.4

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~  302 (435)
                      ...+++|+++|+||+||||.+.+++..+.  ++++.+++.|.
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~  110 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT  110 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            34578999999999999999999876542  23466777774

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=95.67  E-value=0.1  Score=50.47  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=26.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--C-CccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~-~~~~~~ls~  300 (435)
                      ..+++++.|.||+||||++..++...  . +..+..+|.
T Consensus        29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~   67 (271)
T cd01122          29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL   67 (271)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence            35799999999999999999886542  1 233556665

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.67  E-value=0.12  Score=51.13  Aligned_cols=27  Identities=22%  Similarity=0.241  Sum_probs=23.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+.+++++|+||+||||+|+.++....
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~   68 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVG   68 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence            356888899999999999999988764

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.67  E-value=0.0077  Score=57.65  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             EEccCCCChhHHHHHHHhhCCC--ccEEEeccH
Q 013831          271 MVGLPASGKTTWAEKWVKDHPE--KRYILLGTN  301 (435)
Q Consensus       271 m~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D  301 (435)
                      ++|+|||||||+++.+.+-+..  ....+||-|
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD   33 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD   33 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence            5899999999999998765442  246667666

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.67  E-value=0.072  Score=53.35  Aligned_cols=93  Identities=19%  Similarity=0.297  Sum_probs=59.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      ++=|+|-|+||.|||-+|+..+.+... .++.+..-++.+++.  |.      ..   +++       +++.+.|-+.--
T Consensus       185 PKGVLLYGPPGTGKTLLAkAVA~~T~A-tFIrvvgSElVqKYi--GE------Ga---RlV-------RelF~lArekaP  245 (406)
T COG1222         185 PKGVLLYGPPGTGKTLLAKAVANQTDA-TFIRVVGSELVQKYI--GE------GA---RLV-------RELFELAREKAP  245 (406)
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCc-eEEEeccHHHHHHHh--cc------ch---HHH-------HHHHHHHhhcCC
Confidence            577899999999999999999988764 377766666666542  31      01   122       223333333333


Q ss_pred             e-EEEe------------CCCcCHHHHHHHHHHHhc---CC---cEEEEEE
Q 013831          346 N-FIID------------QTNVFKSARKRKLRLFVN---FR---KIAVVVF  377 (435)
Q Consensus       346 ~-vIlD------------~Tn~~~~~R~~~~~~~~~---~~---~~~vv~l  377 (435)
                      + +.||            .|.-.++.++.+++++..   |.   .+.||.-
T Consensus       246 sIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A  296 (406)
T COG1222         246 SIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA  296 (406)
T ss_pred             eEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence            3 3333            467788888888998875   32   5666654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.67  E-value=0.054  Score=49.43  Aligned_cols=110  Identities=15%  Similarity=0.033  Sum_probs=61.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHHHHhccCCCccCCC-ChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      .+++.++|++||||||+.+.++...+ ...-+.+...    .+   +...+.. ...-..   +++     .++...+..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----~i---~~~~q~~~LSgGq~---qrv-----~laral~~~   89 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----TP---VYKPQYIDLSGGEL---QRV-----AIAAALLRN   89 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----EE---EEEcccCCCCHHHH---HHH-----HHHHHHhcC
Confidence            57899999999999999999987643 2223333210    01   1000000 111001   111     133334567


Q ss_pred             CCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 013831          344 PRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR  390 (435)
Q Consensus       344 g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~ee~~~R~~~R  390 (435)
                      ...+|+|-  +++++..++..++.+....   ..+++++.-..+..++...|
T Consensus        90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~  141 (177)
T cd03222          90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDR  141 (177)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCE
Confidence            88999997  6788888887777666532   25666665443334444444

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.66  E-value=0.073  Score=53.23  Aligned_cols=113  Identities=17%  Similarity=0.096  Sum_probs=61.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      .-|+++|.+||||||+.+.+....    ++.+.+.+  ++-. ++.+... .......  ...     ..+..+++.+++
T Consensus       145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivti--Ed~~-El~~~~~-n~v~l~~--~~~-----~~~~~lv~~aLR  213 (323)
T PRK13833        145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL--EDTA-EIQCAAE-NAVALHT--SDT-----VDMARLLKSTMR  213 (323)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEe--cCCc-ccccCCC-CEEEecc--CCC-----cCHHHHHHHHhC
Confidence            457899999999999999998764    33344443  2211 2221110 0000000  000     123356777788


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhh
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF  391 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~  391 (435)
                      .+-+.|+=.=--..+... +++.+..-+  -++.+..+++.+..+|+..-.
T Consensus       214 ~~PD~IivGEiRg~ea~~-~l~a~~tGh~G~itTiHA~s~~~a~~Rl~~l~  263 (323)
T PRK13833        214 LRPDRIIVGEVRDGAALT-LLKAWNTGHPGGVTTIHSNTAMSALRRLEQLT  263 (323)
T ss_pred             CCCCEEEEeecCCHHHHH-HHHHHcCCCCceEEEECCCCHHHHHHHHHHHh
Confidence            777666554222333332 444444333  356666677778888987753

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=95.62  E-value=0.052  Score=54.24  Aligned_cols=115  Identities=15%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh----CCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~----~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ...++++|.+||||||+++.++..    .+..+.+.|.  +- .++.+... ....+...  .     ...+..++..++
T Consensus       148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIE--d~-~El~~~~~-~~v~~~~~--~-----~~~~~~ll~~aL  216 (319)
T PRK13894        148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIE--DT-GEIQCAAE-NYVQYHTS--I-----DVNMTALLKTTL  216 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEc--CC-CccccCCC-CEEEEecC--C-----CCCHHHHHHHHh
Confidence            356889999999999999999876    2333444442  11 12221110 00000000  0     012344667777


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhhh
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFK  392 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~~  392 (435)
                      +.+-++|+=.=--..+... +++.+..-+  -++.+.-+++...+.|+..-..
T Consensus       217 R~~PD~IivGEiR~~Ea~~-~l~A~~tGh~G~~tTiHa~s~~~ai~Rl~~l~~  268 (319)
T PRK13894        217 RMRPDRILVGEVRGPEALD-LLMAWNTGHEGGAATLHANNAKAGLDRLKSLIS  268 (319)
T ss_pred             cCCCCEEEEeccCCHHHHH-HHHHHHcCCCceEEEECCCCHHHHHHHHHHHHh
Confidence            8777665554323444333 445444333  3556666777788888877643

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.62  E-value=0.011  Score=53.44  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=24.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ++++.|.|||||||||.+++..... +.+.+.+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~-~~~y~at   32 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGG-PVTYIAT   32 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEc
Confidence            4788999999999999999877543 3555544

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.61  E-value=0.14  Score=49.16  Aligned_cols=41  Identities=20%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~  307 (435)
                      ..+++.|.||+|||++|..++..+.  +..++.++..++...+
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l  142 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM  142 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence            4789999999999999999987652  2345666665555443

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.60  E-value=0.15  Score=55.31  Aligned_cols=28  Identities=21%  Similarity=0.238  Sum_probs=24.3

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .-...+|++|++|.||||+|+.+++.+.
T Consensus        36 RLpHA~LFtGP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323         36 RLHHAYLFTGTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3457889999999999999999998764

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.60  E-value=0.0075  Score=58.42  Aligned_cols=37  Identities=14%  Similarity=0.152  Sum_probs=28.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL  304 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir  304 (435)
                      +|.++|.+||||||+++++.+.+..  ..+.+|+.|...
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yy   39 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFH   39 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence            4788999999999999998876542  236678877653

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.59  E-value=0.17  Score=45.27  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHH-----HHHhc-cCCCccCCCChHHHHHHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI-----LEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLLS  338 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~i-----r~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~  338 (435)
                      .+++.++|++||||||+.+.++...+. .+-+.+....+     .+... ..+...  ....-..   +++     .++.
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~--qLS~G~~---qrl-----~lar   95 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY--QLSVGER---QMV-----EIAR   95 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE--ecCHHHH---HHH-----HHHH
Confidence            578999999999999999999876542 22233322110     00000 001000  0111000   111     1333


Q ss_pred             HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 013831          339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP  380 (435)
Q Consensus       339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~  380 (435)
                      ..+.....+|+|-  .+++...++..++.++.+.  ..+++++.-.
T Consensus        96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  141 (163)
T cd03216          96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR  141 (163)
T ss_pred             HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3457778999997  5688888888888777652  4566666443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.59  E-value=0.048  Score=52.88  Aligned_cols=127  Identities=19%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ...|+++|.+||||||+.+.+....+..  +.+.+. |.  .++.+.+... ...... ...     ..+.+++..+++.
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE-d~--~E~~l~~~~~-~~~~~~-~~~-----~~~~~~l~~~LR~  196 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE-DP--PELRLPGPNQ-IQIQTR-RDE-----ISYEDLLKSALRQ  196 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE-SS--S-S--SCSSE-EEEEEE-TTT-----BSHHHHHHHHTTS
T ss_pred             ceEEEEECCCccccchHHHHHhhhccccccceEEec-cc--cceeecccce-EEEEee-cCc-----ccHHHHHHHHhcC
Confidence            5789999999999999999999887654  334442 21  1222222100 000000 000     0122355566777


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHH
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNML  407 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~  407 (435)
                      +-++|+=.---..+.-. .++.+..-+.  ++-+.-.++.+..+|+..-    ...++.+.+..+.
T Consensus       197 ~pD~iiigEiR~~e~~~-~~~a~~tGh~~~~tT~Ha~s~~~~i~Rl~~l----~~~~~~~~l~~~l  257 (270)
T PF00437_consen  197 DPDVIIIGEIRDPEAAE-AIQAANTGHLGSLTTLHANSAEDAIERLADL----GMEMDPESLRSRL  257 (270)
T ss_dssp             --SEEEESCE-SCHHHH-HHHHHHTT-EEEEEEEE-SSHHHHHHHHHHH----CCTSCHHHHHHHH
T ss_pred             CCCcccccccCCHhHHH-HHHhhccCCceeeeeeecCCHHHHHHHHHHH----hcccCHHHHHHHH
Confidence            66555544222222222 2443333333  4456666678888898765    2226666555553

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.58  E-value=0.14  Score=48.61  Aligned_cols=36  Identities=17%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--C-CccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~-~~~~~~ls~  300 (435)
                      ..++++++|.||+|||||+..++...  . +..+..+|.
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~   50 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL   50 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence            35899999999999999998876432  1 233566664

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=95.57  E-value=0.15  Score=49.01  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=53.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      +.+||+.|++||||||-++.+. .++   |..+  |.    |  +-        .-+.+..+.+    .  ........-
T Consensus         1 m~lvIVTGlSGAGKsvAl~~lE-DlG---yycv--DN----L--Pp--------~Llp~~~~~~----~--~~~~~~~kv   54 (286)
T COG1660           1 MRLVIVTGLSGAGKSVALRVLE-DLG---YYCV--DN----L--PP--------QLLPKLADLM----L--TLESRITKV   54 (286)
T ss_pred             CcEEEEecCCCCcHHHHHHHHH-hcC---eeee--cC----C--CH--------HHHHHHHHHH----h--hcccCCceE
Confidence            3689999999999988777664 444   6555  32    1  00        0011111110    0  101112444


Q ss_pred             eEEEeCCCcC-HHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHH
Q 013831          346 NFIIDQTNVF-KSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       346 ~vIlD~Tn~~-~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~  389 (435)
                      -|++|--+.. .+.-...+..++..+  .+.++|+++. +++++|-+.
T Consensus        55 Av~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~e  102 (286)
T COG1660          55 AVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSE  102 (286)
T ss_pred             EEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhh
Confidence            7888985441 111222333444442  4788999986 889998866

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.55  E-value=0.17  Score=46.05  Aligned_cols=115  Identities=23%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEecc-H--------HHHHHhcc-CCCcc-CCCC--hHHHHHHHH---H
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT-N--------LILEQMKV-PGLLR-KHNY--SERFQCLMG---R  328 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~-D--------~ir~~~~~-~G~~~-~~~~--~~~~~~~~~---~  328 (435)
                      .+++.++|.+||||||+.+.++...+ ..+-+.+.. +        ..++.+.. ..... ...+  ....+.+.-   .
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~L  105 (182)
T cd03215          26 GEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL  105 (182)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhc
Confidence            57889999999999999999997654 222233322 1        11111111 11000 0001  111121110   0


Q ss_pred             --HHHHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 013831          329 --ANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP  380 (435)
Q Consensus       329 --~~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~  380 (435)
                        -++..-.++...+.....+|+|-  +++++..|+..++.+....  ..+++++.-.
T Consensus       106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  163 (182)
T cd03215         106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE  163 (182)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence              00111123333456778999996  7788888888877776542  3566555433

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=95.54  E-value=0.047  Score=56.24  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=26.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ++-+++.|+||+|||++|+.++..... .++.+..
T Consensus       179 pkgvLL~GppGTGKT~LAkalA~~l~~-~fi~i~~  212 (398)
T PTZ00454        179 PRGVLLYGPPGTGKTMLAKAVAHHTTA-TFIRVVG  212 (398)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCC-CEEEEeh
Confidence            567889999999999999999988753 2555543

>PRK09183 transposase/IS protein; Provisional

Probab=95.54  E-value=0.15  Score=49.52  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=20.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .+.++++|+||+||||+|..++..
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            356889999999999999998643

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=95.52  E-value=0.19  Score=49.53  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..++++|+||+||||+|+.++..+.
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~   55 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMG   55 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            34578999999999999999998875

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.51  E-value=0.01  Score=55.09  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=21.2

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +|+++|++||||||+++.++...+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999998877654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=95.51  E-value=0.16  Score=57.02  Aligned_cols=27  Identities=19%  Similarity=0.164  Sum_probs=23.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -...+|+.|++|+||||+|+.+++.+.
T Consensus        36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764         36 INHAYLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            356789999999999999999998764

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.49  E-value=0.051  Score=55.64  Aligned_cols=39  Identities=21%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i  303 (435)
                      .+.+|+++|++|+||||.+.+|+..+.  ++.+..++.|..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~  280 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS  280 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence            357899999999999999999986542  233556777753

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.48  E-value=0.0093  Score=53.17  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=21.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      =|++.|.||+||||++.+++..+..
T Consensus         7 ki~ITG~PGvGKtTl~~ki~e~L~~   31 (179)
T COG1618           7 KIFITGRPGVGKTTLVLKIAEKLRE   31 (179)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHh
Confidence            3788999999999999999876543

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=95.48  E-value=0.061  Score=58.21  Aligned_cols=108  Identities=15%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc--------HHHHHHhcc--------CCCccCC------CChHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT--------NLILEQMKV--------PGLLRKH------NYSERFQ  323 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~--------D~ir~~~~~--------~G~~~~~------~~~~~~~  323 (435)
                      .+.+.++|.+||||||+++-+...+|..+-+.++.        +.+|+....        .|..++.      .+++  +
T Consensus       376 G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~--e  453 (588)
T PRK11174        376 GQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASD--E  453 (588)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCH--H
Confidence            57889999999999999999998776544455543        344444331        1222210      1111  2


Q ss_pred             HHHHHHHH-HHHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831          324 CLMGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVN-FRKIAVVVF  377 (435)
Q Consensus       324 ~~~~~~~~-~~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~-~~~~~vv~l  377 (435)
                      ++.+.++. .+.+.+ ..+..|.+.++.  ..|++..+|++ +..++. +.+..++.+
T Consensus       454 ei~~al~~a~l~~~i-~~lp~G~dT~vge~G~~LSGGQrQR-ialARAll~~~~IliL  509 (588)
T PRK11174        454 QLQQALENAWVSEFL-PLLPQGLDTPIGDQAAGLSVGQAQR-LALARALLQPCQLLLL  509 (588)
T ss_pred             HHHHHHHHhCHHHHH-HhcccccccccccCCCCCCHHHHHH-HHHHHHHhcCCCEEEE
Confidence            23222221 233344 234567766553  37888888887 666655 334455555

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.47  E-value=0.15  Score=48.75  Aligned_cols=25  Identities=28%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      =++++|.+||||||++..+...+..
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~   39 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRH   39 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcc
Confidence            4678999999999999999877653

This is thought to be an ATPase involved in viral DNA packaging [].

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=95.47  E-value=0.24  Score=45.16  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=24.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ||-+.+..|||++|+|+++++.++   +..++.+.+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg---~~~~d~~ii   33 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLG---YPYYDREII   33 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT-----EE-HHHH
T ss_pred             CEEECCCCCCChHHHHHHHHHHcC---CccCCHHHH
Confidence            577889999999999999999998   666776444

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.44  E-value=0.013  Score=63.17  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .+..++.+|||+||.||||+|+-++++-+-. ++-|+.
T Consensus       323 RP~kKilLL~GppGlGKTTLAHViAkqaGYs-VvEINA  359 (877)
T KOG1969|consen  323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYS-VVEINA  359 (877)
T ss_pred             CCccceEEeecCCCCChhHHHHHHHHhcCce-EEEecc
Confidence            3457899999999999999999999887622 344444

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=95.44  E-value=0.019  Score=52.20  Aligned_cols=31  Identities=26%  Similarity=0.527  Sum_probs=23.5

Q ss_pred             EEEEEccCCCChhHHHHHHH-hhCCCccEEEe
Q 013831          268 VMMMVGLPASGKTTWAEKWV-KDHPEKRYILL  298 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~-~~~~~~~~~~l  298 (435)
                      ++++.|..||||||+.+++. ....+.++.+|
T Consensus         2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI   33 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVI   33 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEE
Confidence            68999999999999999999 44444444333

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PTZ00202 tuzin; Provisional

Probab=95.42  E-value=0.16  Score=52.66  Aligned_cols=27  Identities=15%  Similarity=0.357  Sum_probs=24.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+.+++++|.+|+||||+++.+....+
T Consensus       285 ~privvLtG~~G~GKTTLlR~~~~~l~  311 (550)
T PTZ00202        285 HPRIVVFTGFRGCGKSSLCRSAVRKEG  311 (550)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhcCC
Confidence            356999999999999999999998776

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.41  E-value=0.011  Score=51.63  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=24.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      +++++|.||+||||++..++....  +...+.++.+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e   36 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE   36 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            478999999999999999977643  2234555543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.39  E-value=0.15  Score=57.10  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=24.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+..+|++|+||+||||+|+.+++.+.
T Consensus        37 l~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         37 LHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            457789999999999999999998875

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=95.39  E-value=0.072  Score=53.96  Aligned_cols=43  Identities=19%  Similarity=0.111  Sum_probs=34.5

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~  305 (435)
                      +-+-+..+++.|+||.|||.+|+.+++++.. .++.++.-++..
T Consensus       144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~-~~i~vsa~eL~s  186 (413)
T PLN00020        144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGI-EPIVMSAGELES  186 (413)
T ss_pred             CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-CeEEEEHHHhhc
Confidence            3345789999999999999999999999864 377887766543

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.37  E-value=0.014  Score=57.39  Aligned_cols=38  Identities=29%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNL  302 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~  302 (435)
                      ...+|+++|++|+||||.+.+++..+    ....+.+|+.|.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            46799999999999999999987654    224466777775

>PLN02796 D-glycerate 3-kinase

Probab=95.37  E-value=0.016  Score=58.13  Aligned_cols=39  Identities=21%  Similarity=0.011  Sum_probs=29.6

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEeccHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNL  302 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~D~  302 (435)
                      +.+-+|-++|.+||||||+++.+...+...  ....|+.|.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd  138 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD  138 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence            357889999999999999999998876531  244565554

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=95.36  E-value=0.063  Score=54.60  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=26.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ++-+++.|+||+||||+|+.++..+... ++.++.
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~-~~~v~~  189 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNAT-FIRVVG  189 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCC-EEecch
Confidence            4558999999999999999999987632 555443

Many proteins may score above the trusted cutoff because an internal

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=95.35  E-value=0.039  Score=58.51  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=29.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      ++=+++.|+||+|||++|+.++.... ..++.++...+.
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~-~~~~~i~~~~~~  125 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAG-VPFFSISGSDFV  125 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcC-CCeeeccHHHHH
Confidence            34589999999999999999998865 336666655543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=95.35  E-value=0.069  Score=51.59  Aligned_cols=40  Identities=18%  Similarity=0.336  Sum_probs=29.1

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL  302 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~  302 (435)
                      ...+.+|+++|..|||||||.++|...+..  .+-.+|+.|-
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDP   57 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDP   57 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCH
Confidence            345788999999999999999998754322  1235667774

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=95.35  E-value=0.064  Score=53.43  Aligned_cols=113  Identities=17%  Similarity=0.107  Sum_probs=60.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhcC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      .-|.+.||+|+||||+.-.+.+.+.  +.....|..|.||.-+.     .+-.|.+ ..++-+.++..    .....+..
T Consensus        51 ctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~-----knlgfs~edreenirriae----vaklfada  121 (627)
T KOG4238|consen   51 CTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLN-----KNLGFSPEDREENIRRIAE----VAKLFADA  121 (627)
T ss_pred             eeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhh-----hccCCCchhHHHHHHHHHH----HHHHHhcC
Confidence            3468899999999999877766542  12256677788876432     1112322 22333332221    22222456


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcC-C-cEEEEEECCh-HHHHHHHHH
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNF-R-KIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~-~-~~~vv~l~~~-ee~~~R~~~  389 (435)
                      |-.-|-.....+.+.|.. -+.+.+. . .+.-|+++++ +.|.+|.-+
T Consensus       122 glvcitsfispf~~dr~~-arkihe~~~l~f~ev~v~a~l~vceqrd~k  169 (627)
T KOG4238|consen  122 GLVCITSFISPFAKDREN-ARKIHESAGLPFFEVFVDAPLNVCEQRDVK  169 (627)
T ss_pred             CceeeehhcChhhhhhhh-hhhhhcccCCceEEEEecCchhhhhhcChH
Confidence            654444433333344443 2233332 2 4555788888 899888644

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=95.34  E-value=0.023  Score=53.58  Aligned_cols=37  Identities=24%  Similarity=0.283  Sum_probs=26.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccE-EEeccHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRY-ILLGTNLILEQM  307 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~-~~ls~D~ir~~~  307 (435)
                      +|.++|.|||||||+|+.+.+....  + +.+ .|.|++.+
T Consensus         2 iI~i~G~~gsGKstva~~~~~~g~~--~~~~~-~d~ik~~l   39 (227)
T PHA02575          2 LIAISGKKRSGKDTVADFIIENYNA--VKYQL-ADPIKEIL   39 (227)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhcCCc--EEEeh-hHHHHHHH
Confidence            7899999999999999999766431  3 333 36666544

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=95.34  E-value=0.15  Score=56.11  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=23.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -...+|++|.+|+||||+|+.+++.+.
T Consensus        37 L~HAyLFtGPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003         37 LHHAYLFTGTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            356889999999999999999998764

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.33  E-value=0.019  Score=49.15  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=24.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ...+|+|.|.-|||||||+|.+++.+.
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            358999999999999999999999886

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK04195 replication factor C large subunit; Provisional

Probab=95.31  E-value=0.084  Score=55.85  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=26.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      ...+++.|+||+||||+|+.++++++- .++.++
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~-~~ieln   71 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGW-EVIELN   71 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCC-CEEEEc
Confidence            568899999999999999999998752 244554

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=95.27  E-value=0.12  Score=49.04  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .=+++.|+||.||||-+..|++++
T Consensus        49 P~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   49 PNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CceEeeCCCCCchhhHHHHHHHHH
Confidence            346789999999999999888775

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.27  E-value=0.11  Score=51.51  Aligned_cols=114  Identities=17%  Similarity=0.111  Sum_probs=61.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ..++++|.+||||||+++.++...+    ..+.+.+  ++. .++.+.+. ....+... +..     ..+..++..+++
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti--Ed~-~El~~~~~-~~v~~~~~-~~~-----~~~~~~l~~aLR  202 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII--EDT-RELQCAAP-NVVQLRTS-DDA-----ISMTRLLKATLR  202 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE--CCc-hhhcCCCC-CEEEEEec-CCC-----CCHHHHHHHHhc
Confidence            4678999999999999999987753    3344444  222 22322111 00000000 000     023456777788


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhh
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF  391 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~  391 (435)
                      .+-++|+=.---..+. ..+++.+..-+  -++.+..+++.+.+.|+..-.
T Consensus       203 ~~pD~iivGEiR~~ea-~~~l~a~~tGh~G~~tTiHa~~~~~ai~Rl~~l~  252 (299)
T TIGR02782       203 LRPDRIIVGEVRGGEA-LDLLKAWNTGHPGGIATIHANNAKAALDRLEQLI  252 (299)
T ss_pred             CCCCEEEEeccCCHHH-HHHHHHHHcCCCCeEEeeccCCHHHHHHHHHHHH
Confidence            7776655443234443 22344444323  355566666778888887653

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=95.26  E-value=0.02  Score=53.48  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      -+|-+=||.||||||+|+.+++.++   +..|++-.+.+.
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg---~~yldTGamYRa   41 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLG---FHYLDTGAMYRA   41 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhC---CCeecccHHHHH
Confidence            4566779999999999999999998   788888766444

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.21  E-value=0.013  Score=60.13  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=22.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+=|++.|+||+||||||+.++.-+.
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHHH
Confidence            56789999999999999999987543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.19  E-value=0.15  Score=51.16  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +.++++++|++||||||+-+.++--
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999999854

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.17  E-value=0.015  Score=48.39  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.0

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~  291 (435)
                      |+++|.+|+||||+.++++....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS-
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            68999999999999999987653

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.16  E-value=0.085  Score=58.77  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=29.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ++-+++.|+||+||||+|+.++...+. .++.++...+
T Consensus       212 ~~giLL~GppGtGKT~laraia~~~~~-~~i~i~~~~i  248 (733)
T TIGR01243       212 PKGVLLYGPPGTGKTLLAKAVANEAGA-YFISINGPEI  248 (733)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHhCC-eEEEEecHHH
Confidence            467899999999999999999988763 3566655443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=95.16  E-value=0.2  Score=55.52  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+++.|+||+||||+|+.+++...
T Consensus        54 slLL~GPpGtGKTTLA~aIA~~~~   77 (725)
T PRK13341         54 SLILYGPPGVGKTTLARIIANHTR   77 (725)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            468899999999999999998764

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.16  E-value=0.018  Score=57.76  Aligned_cols=38  Identities=18%  Similarity=0.293  Sum_probs=28.4

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ..+.+|-++|+|||||||++..+...+.  +.++.+|+.|
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D   93 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD   93 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence            3578999999999999999998765543  2335566655

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=95.14  E-value=0.058  Score=56.21  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=26.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      ++-+++.|+||+|||++|+.++..+... ++.+.
T Consensus       217 p~gVLL~GPPGTGKT~LAraIA~el~~~-fi~V~  249 (438)
T PTZ00361        217 PKGVILYGPPGTGKTLLAKAVANETSAT-FLRVV  249 (438)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCC-EEEEe
Confidence            4568899999999999999999987633 44443

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.14  E-value=0.2  Score=52.87  Aligned_cols=25  Identities=28%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +.-++++|+||+||||.|+.+++.+
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~L   59 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCL   59 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHH
Confidence            5678999999999999999998754

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=95.13  E-value=0.02  Score=64.25  Aligned_cols=39  Identities=15%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~  308 (435)
                      .+|.+-|+|||||||+|+.+++.++   +..|+++.+.+.+.
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~---~~~~~~g~~yRa~a   73 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLG---AQCLNTGSFYRAFT   73 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHH
Confidence            4788899999999999999999998   67899998877653

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=95.12  E-value=0.1  Score=53.28  Aligned_cols=117  Identities=13%  Similarity=0.058  Sum_probs=55.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      -+++++|++||||||+.+.+....    +..+.+.|- |-+  ++.+.+. .......+.+ +-... ..+..++..+++
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiE-dp~--E~~~~~~-~~~~~~~q~e-vg~~~-~~~~~~l~~aLR  223 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYE-DPI--EYILGSP-DDLLPPAQSQ-IGRDV-DSFANGIRLALR  223 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe-cCc--hhccCCC-ceeecccccc-cCCCc-cCHHHHHHHhhc
Confidence            478999999999999999987654    223344441 221  1111111 0000000000 00000 123346666778


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHH
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVK  389 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~  389 (435)
                      ..-++|+=.=--..+.-...++.+..-+ -+..+.-++..+.+.|+..
T Consensus       224 ~~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s~~~ai~Rl~~  271 (372)
T TIGR02525       224 RAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQ  271 (372)
T ss_pred             cCCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHHH
Confidence            7776666553234433222233332222 2333444555677777765

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=95.12  E-value=0.016  Score=54.06  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      =++|.|+||+|||++|+++..-+|.
T Consensus        24 ~lLl~GppGtGKTmlA~~l~~lLP~   48 (206)
T PF01078_consen   24 HLLLIGPPGTGKTMLARRLPSLLPP   48 (206)
T ss_dssp             -EEEES-CCCTHHHHHHHHHHCS--
T ss_pred             CeEEECCCCCCHHHHHHHHHHhCCC
Confidence            4789999999999999999988874

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=95.11  E-value=0.016  Score=51.90  Aligned_cols=26  Identities=38%  Similarity=0.477  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +.++.++|.+||||||+++++...+.
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999998765

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.10  E-value=0.02  Score=47.83  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWV  287 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~  287 (435)
                      .+++.+.|++||||||+++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            5889999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PHA02244 ATPase-like protein

Probab=95.10  E-value=0.043  Score=55.66  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      |+|.|+||+||||+|+.++..+. ..++.++
T Consensus       122 VLL~GppGtGKTtLA~aLA~~lg-~pfv~In  151 (383)
T PHA02244        122 VFLKGGAGSGKNHIAEQIAEALD-LDFYFMN  151 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-CCEEEEe
Confidence            67899999999999999998765 3366665

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.09  E-value=0.016  Score=52.08  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=18.3

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+.+++++|.||+||||+.+.+.....
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3468999999999999999998876543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=95.09  E-value=0.35  Score=53.87  Aligned_cols=22  Identities=36%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      ++++|+||+|||++|+.++...
T Consensus       206 ~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       206 PLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             eEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999998764

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.08  E-value=0.021  Score=58.62  Aligned_cols=38  Identities=16%  Similarity=-0.025  Sum_probs=28.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~  302 (435)
                      .+-||-++|.+||||||+++.+...+.  +.....|+.|.
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD  250 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD  250 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence            578899999999999999999976553  22355666664

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.07  E-value=0.1  Score=55.77  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=59.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEecc-------HHHHHHhcc--------CCCccCC-CC-hH--HHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT-------NLILEQMKV--------PGLLRKH-NY-SE--RFQCL  325 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~-------D~ir~~~~~--------~G~~~~~-~~-~~--~~~~~  325 (435)
                      .+.+.++|++||||||+++-+...++ ..+-+.++.       +.+|+....        .|..++. .+ .+  .-+++
T Consensus       361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i  440 (529)
T TIGR02868       361 GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEEL  440 (529)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHH
Confidence            57889999999999999999987654 233444443       122222221        1111110 01 00  01222


Q ss_pred             HHHHHH-HHHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhcC-CcEEEEEEC
Q 013831          326 MGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVFP  378 (435)
Q Consensus       326 ~~~~~~-~~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~  378 (435)
                      .+.++. .+.+.+. .+..|.+..+.  ..|++..+|++ +..++.. .+..++.++
T Consensus       441 ~~al~~a~l~~~i~-~lp~GldT~ige~G~~LSGGQrQR-iaiARall~~~~iliLD  495 (529)
T TIGR02868       441 WAALERVGLADWLR-SLPDGLDTVLGEGGARLSGGERQR-LALARALLADAPILLLD  495 (529)
T ss_pred             HHHHHHcCCHHHHH-hCcccccchhccccCcCCHHHHHH-HHHHHHHhcCCCEEEEe
Confidence            222221 1223332 24567766665  37899999997 6666653 455565663

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>CHL00195 ycf46 Ycf46; Provisional

Probab=95.07  E-value=0.044  Score=57.94  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=28.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ++-|+|.|+||+|||++|+.++.+... .++.++...
T Consensus       259 pkGILL~GPpGTGKTllAkaiA~e~~~-~~~~l~~~~  294 (489)
T CHL00195        259 PRGLLLVGIQGTGKSLTAKAIANDWQL-PLLRLDVGK  294 (489)
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCC-CEEEEEhHH
Confidence            567899999999999999999998753 356665443

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.07  E-value=0.25  Score=52.59  Aligned_cols=27  Identities=22%  Similarity=0.080  Sum_probs=23.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+.+++++|+||+||||+|+.+++.+.
T Consensus        35 l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         35 LGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            357789999999999999999988753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.06  E-value=0.096  Score=47.30  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=22.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+.+.+.|++|+||||+-+.++.--
T Consensus        29 Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhcc
Confidence            5788999999999999999998753

>PRK06921 hypothetical protein; Provisional

Probab=95.04  E-value=0.32  Score=47.32  Aligned_cols=40  Identities=15%  Similarity=0.115  Sum_probs=27.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC---ccEEEeccHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILE  305 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~---~~~~~ls~D~ir~  305 (435)
                      ..-+++.|.||+|||++|..++..+..   ..++.++...++.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~  159 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG  159 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence            456899999999999999999876432   2344555444333

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.02  E-value=0.015  Score=52.65  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |++.|.||+||||+.+++.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            6899999999999999988776

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=95.00  E-value=0.014  Score=64.67  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=29.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      +|.+.|+|||||||+|+.+++.++   +..+++..+.+.
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~---~~~~~~g~~~r~   38 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLG---YAYLDTGAMYRA   38 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEeecCcEeHH
Confidence            688999999999999999999987   566666555443

>PF13479 AAA_24: AAA domain

Probab=94.98  E-value=0.049  Score=51.10  Aligned_cols=30  Identities=33%  Similarity=0.517  Sum_probs=24.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      +.-+++.|.||+||||+|..+    +.  .++|++|
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~----~k--~l~id~E   32 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL----PK--PLFIDTE   32 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC----CC--eEEEEeC
Confidence            456889999999999999998    32  5677665

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=94.97  E-value=0.051  Score=59.97  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEE--------eccHHHHHHhcc-C-------CCccCC----CChHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYIL--------LGTNLILEQMKV-P-------GLLRKH----NYSERFQC  324 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~--------ls~D~ir~~~~~-~-------G~~~~~----~~~~~~~~  324 (435)
                      .+.|.++|.+||||||+++-+..-+.. .+-+.        ++.+.+|+.++. .       |..++.    ......++
T Consensus       499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~  578 (709)
T COG2274         499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEE  578 (709)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHH
Confidence            577899999999999999999876532 11222        333566776652 1       222211    00111233


Q ss_pred             HHHHHHHH-HHHHHHHHhcCCCeEEE--eCCCcCHHHHHHHHHHHhcC-CcEEEEEE
Q 013831          325 LMGRANAI-FDVLLSRASRTPRNFII--DQTNVFKSARKRKLRLFVNF-RKIAVVVF  377 (435)
Q Consensus       325 ~~~~~~~~-~~~ll~~al~~g~~vIl--D~Tn~~~~~R~~~~~~~~~~-~~~~vv~l  377 (435)
                      +++.|+.+ .+..+ ..+-.|.+.+|  .+.|++-.+|++ +..++.. .+-.++.+
T Consensus       579 i~~A~~~ag~~~fI-~~lP~gy~t~v~E~G~~LSGGQrQr-lalARaLl~~P~ILlL  633 (709)
T COG2274         579 IIEAAQLAGAHEFI-ENLPMGYDTPVGEGGANLSGGQRQR-LALARALLSKPKILLL  633 (709)
T ss_pred             HHHHHHHhCcHHHH-HhcccccccccccCCCCCCHHHHHH-HHHHHHhccCCCEEEE
Confidence            44433321 12222 33456766555  347888888886 5666553 34445555

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=94.96  E-value=0.37  Score=44.31  Aligned_cols=112  Identities=12%  Similarity=0.093  Sum_probs=60.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC--C-CccEEEeccH-----HHHHHhccCCCccCCCCh--HHHHHHH------HH-
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGTN-----LILEQMKVPGLLRKHNYS--ERFQCLM------GR-  328 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~--~-~~~~~~ls~D-----~ir~~~~~~G~~~~~~~~--~~~~~~~------~~-  328 (435)
                      .+++.++|++||||||+.+.++...  + ..+-+.++..     .++..+..... ....+.  ..++.+.      .. 
T Consensus        35 Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q-~~~~~~~~t~~~~i~~~~~~~~LS  113 (194)
T cd03213          35 GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQ-DDILHPTLTVRETLMFAAKLRGLS  113 (194)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccC-cccCCCCCcHHHHHHHHHHhccCC
Confidence            5789999999999999999998875  3 2233333221     12222221110 001111  1111111      00 


Q ss_pred             -HHHHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEEC
Q 013831          329 -ANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFP  378 (435)
Q Consensus       329 -~~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~  378 (435)
                       -++..-.++.+.+.....+|+|.  +.++...|+..++.+....  ..+++++.
T Consensus       114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s  168 (194)
T cd03213         114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSI  168 (194)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence             00111123334456778899996  6788888888777776542  34555553

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=94.94  E-value=0.31  Score=51.83  Aligned_cols=27  Identities=26%  Similarity=0.203  Sum_probs=23.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+..++++|+||+||||+|+.+++.+.
T Consensus        42 i~~a~Lf~Gp~G~GKTT~ArilAk~Ln   68 (507)
T PRK06645         42 LAGGYLLTGIRGVGKTTSARIIAKAVN   68 (507)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            356789999999999999999998764

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.91  E-value=0.03  Score=57.76  Aligned_cols=38  Identities=32%  Similarity=0.262  Sum_probs=29.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D~i  303 (435)
                      ..+++++|++||||||.+.+++...   .+..+.+++.|..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~  263 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY  263 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence            5789999999999999999998643   2334667777763

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=94.89  E-value=0.015  Score=48.29  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=19.4

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |++.|.||.|||++|+.|++.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999988664

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.88  E-value=0.025  Score=57.56  Aligned_cols=39  Identities=26%  Similarity=0.259  Sum_probs=29.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~i  303 (435)
                      +..+++++|++|+||||.+.+++..+    +.+.+..++.|..
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~  178 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY  178 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            35799999999999999999998642    2234556777764

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=94.85  E-value=0.27  Score=51.61  Aligned_cols=39  Identities=10%  Similarity=0.129  Sum_probs=29.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhh----CCCccEEEeccHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQ  306 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~----~~~~~~~~ls~D~ir~~  306 (435)
                      -+++.|.+|+|||++++.++..    .++..++.++.+++...
T Consensus       143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~  185 (450)
T PRK14087        143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK  185 (450)
T ss_pred             ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            3689999999999999988763    34455677877766544

>PRK13764 ATPase; Provisional

Probab=94.84  E-value=0.085  Score=56.97  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ...|+++|+|||||||+++.++...+.
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~  283 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYAD  283 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            456899999999999999999877653

>cd03112 CobW_like The function of this protein family is unkown

Probab=94.84  E-value=0.032  Score=49.78  Aligned_cols=25  Identities=24%  Similarity=0.423  Sum_probs=21.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      +++++|.+||||||+.+.+.+...+
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~~~   26 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQHG   26 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhcccC
Confidence            6789999999999999999877543

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=94.84  E-value=0.057  Score=60.16  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=29.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      +.-+++.|+||+|||++|+.++.+.. ..++.++..++.
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~-~~fi~v~~~~l~  524 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESG-ANFIAVRGPEIL  524 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcC-CCEEEEehHHHh
Confidence            34578999999999999999998876 346677655443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=94.82  E-value=0.024  Score=50.26  Aligned_cols=24  Identities=21%  Similarity=0.273  Sum_probs=21.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .-++++|.+|+||||+|..+.+..
T Consensus        15 ~gvLi~G~sG~GKStlal~L~~~g   38 (149)
T cd01918          15 IGVLITGPSGIGKSELALELIKRG   38 (149)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            568999999999999999988763

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.81  E-value=0.32  Score=52.26  Aligned_cols=39  Identities=15%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~  305 (435)
                      ++=|++-|+||+||||+|+.++.+.. .+++.+.--+++.
T Consensus       468 pkGVLlyGPPGC~KT~lAkalAne~~-~nFlsvkgpEL~s  506 (693)
T KOG0730|consen  468 PKGVLLYGPPGCGKTLLAKALANEAG-MNFLSVKGPELFS  506 (693)
T ss_pred             CceEEEECCCCcchHHHHHHHhhhhc-CCeeeccCHHHHH
Confidence            68899999999999999999998765 3466665544443

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=94.81  E-value=0.27  Score=46.38  Aligned_cols=37  Identities=11%  Similarity=0.118  Sum_probs=29.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ..-++++|+.|+||+|+..++.+++++.--..+|.+.
T Consensus        37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~tt   73 (231)
T KOG0707|consen   37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTT   73 (231)
T ss_pred             CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCC
Confidence            4778999999999999999999999863334555543

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=94.80  E-value=0.17  Score=50.24  Aligned_cols=138  Identities=19%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCC-CccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPG-LLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ...++++|.+||||||+.+.+....+. .+.+.+  ++. .++.+.. ..-...+...-+.   ...-.+.+++..+++.
T Consensus       144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i--ed~-~El~~~~~~~~~l~~~~~~~~---~~~~~~~~~l~~~Lr~  217 (308)
T TIGR02788       144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI--EDT-REIFLPHPNYVHLFYSKGGQG---LAKVTPKDLLQSCLRM  217 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHccCCccccEEEE--cCc-cccCCCCCCEEEEEecCCCCC---cCccCHHHHHHHHhcC
Confidence            468999999999999999999988763 234444  322 2222111 0000000000000   0001122345555565


Q ss_pred             C-CeEEEeCCCcCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHhhh--hcCCCCcHHHHHHHH-hccc
Q 013831          344 P-RNFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRFK--EMGKEVPADAVNNML-ANYV  411 (435)
Q Consensus       344 g-~~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~~ee~~~R~~~R~~--~~~~~vp~~vi~~m~-~~fe  411 (435)
                      . ..+|+|-.- ..+.. .+++.+..-+.  +..+.-.+......|+.....  ..+...|.+++.++. +.+.
T Consensus       218 ~pd~ii~gE~r-~~e~~-~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~~~i~~~~d  289 (308)
T TIGR02788       218 RPDRIILGELR-GDEAF-DFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIVKLVREVID  289 (308)
T ss_pred             CCCeEEEeccC-CHHHH-HHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHHHHHHHhCC
Confidence            4 456666643 33332 23444433222  233333445666888876643  123456777776553 3444

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK08181 transposase; Validated

Probab=94.80  E-value=0.2  Score=48.91  Aligned_cols=41  Identities=17%  Similarity=0.266  Sum_probs=28.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~ir~~~  307 (435)
                      +-++++|+||+|||++|..++...  .+..++.++..+++..+
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            448999999999999999987532  22335556666665554

>TIGR00750 lao LAO/AO transport system ATPase

Probab=94.77  E-value=0.028  Score=55.65  Aligned_cols=38  Identities=16%  Similarity=0.264  Sum_probs=28.2

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ....+|.++|+|||||||++..+...+.  +..+.+|+.|
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D   71 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD   71 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            3578999999999999999999876532  2235566555

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=0.11  Score=55.31  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=31.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~  305 (435)
                      ++=|++.|+||+|||.+|+.++.++. -.++.|+.-+|.-
T Consensus       223 prGvLlHGPPGCGKT~lA~AiAgel~-vPf~~isApeivS  261 (802)
T KOG0733|consen  223 PRGVLLHGPPGCGKTSLANAIAGELG-VPFLSISAPEIVS  261 (802)
T ss_pred             CCceeeeCCCCccHHHHHHHHhhhcC-CceEeecchhhhc
Confidence            46689999999999999999999875 3377888776643

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=94.75  E-value=0.018  Score=54.21  Aligned_cols=21  Identities=43%  Similarity=0.764  Sum_probs=19.5

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |++.|.|||||||++++++..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~   21 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKD   21 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHh
Confidence            578999999999999999988

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=94.75  E-value=0.056  Score=52.19  Aligned_cols=38  Identities=21%  Similarity=0.436  Sum_probs=27.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      +...++++.|.||||||+|+.+++.+.-  +...+.++++
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~   60 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE   60 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            3468999999999999999999875421  2335566665

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=94.74  E-value=0.066  Score=57.70  Aligned_cols=110  Identities=15%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEe--------ccHHHHHHhcc--------CCCccCC-CCh-H--HHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL--------GTNLILEQMKV--------PGLLRKH-NYS-E--RFQC  324 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~l--------s~D~ir~~~~~--------~G~~~~~-~~~-~--~~~~  324 (435)
                      .+.+.++|.+||||||+++-+.+-++. .+-+.+        +.+.+|+.+..        .|..++. .+. +  .-++
T Consensus       355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~ee  434 (567)
T COG1132         355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEE  434 (567)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHH
Confidence            567789999999999999999987653 223333        23345555441        1111110 011 0  1133


Q ss_pred             HHHHHHHH-HHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhcC-CcEEEEEE
Q 013831          325 LMGRANAI-FDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVF  377 (435)
Q Consensus       325 ~~~~~~~~-~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~-~~~~vv~l  377 (435)
                      +.+.++.+ +.+.++. +.+|.+.++.  ..+++..+|++ +..++.. .+-.++.+
T Consensus       435 i~~a~k~a~~~d~I~~-lp~g~dt~vge~G~~LSgGQrQr-laiARall~~~~ILIL  489 (567)
T COG1132         435 IEEALKLANAHEFIAN-LPDGYDTIVGERGVNLSGGQRQR-LAIARALLRNPPILIL  489 (567)
T ss_pred             HHHHHHHhChHHHHHh-CcccccceecCCCccCCHHHHHH-HHHHHHHhcCCCEEEE
Confidence            44433332 3444433 3568888887  47899999987 6666653 33344444

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=94.72  E-value=0.023  Score=49.83  Aligned_cols=24  Identities=38%  Similarity=0.486  Sum_probs=21.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +|++||..+|||||+++.|...+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            689999999999999999987654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.72  E-value=0.027  Score=52.49  Aligned_cols=30  Identities=30%  Similarity=0.408  Sum_probs=25.5

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +.+...+|.++|.+|||||||.++++..+.
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            445688999999999999999999987743

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.70  E-value=0.11  Score=55.46  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      +.=|+|||+||+|||-+|+..+.+.. .+++.|-
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag-~NFisVK  577 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAG-ANFISVK  577 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhcc-CceEeec
Confidence            46689999999999999999998865 3366653

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.69  E-value=0.024  Score=55.84  Aligned_cols=27  Identities=26%  Similarity=0.430  Sum_probs=23.5

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+.+++++.||+||||||++|.+.+-.
T Consensus        52 ~~GeIfViMGLSGSGKSTLvR~~NrLi   78 (386)
T COG4175          52 EEGEIFVIMGLSGSGKSTLVRLLNRLI   78 (386)
T ss_pred             cCCeEEEEEecCCCCHHHHHHHHhccC
Confidence            457899999999999999999987654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.67  E-value=0.025  Score=58.01  Aligned_cols=39  Identities=21%  Similarity=0.163  Sum_probs=30.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC------CccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~------~~~~~~ls~D~i  303 (435)
                      .+.+|+++|++|+||||.+.+++..+.      ++.+.+++.|..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~  217 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY  217 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence            467999999999999999999986542      344667777753

>cd04163 Era Era subfamily

Probab=94.67  E-value=0.026  Score=49.05  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +..|+++|.|||||||++..+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467899999999999999998754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03689 pup_AAA proteasome ATPase

Probab=94.66  E-value=0.083  Score=56.03  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=22.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +.=++|.|+||+|||++|+.++..+.
T Consensus       216 p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       216 PKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             CcceEEECCCCCcHHHHHHHHHHhhc
Confidence            34589999999999999999998864

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=94.65  E-value=0.027  Score=51.02  Aligned_cols=33  Identities=21%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT  300 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~  300 (435)
                      ++++.|.||+|||+++.+++...  .+..+..++.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~   35 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL   35 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            36899999999999999876532  2234666665

A related protein is found in archaea.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.63  E-value=0.15  Score=56.48  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=30.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir  304 (435)
                      .++|+|+|+.|+||||.+.+++..+    +.+.+.+++.|..|
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R  227 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR  227 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence            5799999999999999999998654    22345677777654

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=94.62  E-value=0.042  Score=53.99  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=27.6

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEec
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG  299 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls  299 (435)
                      ....++-++|.|||||||+.+++...+.. .+..+|.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~  138 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIE  138 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEEC
Confidence            34789999999999999999999887542 2344443

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=94.61  E-value=0.032  Score=55.14  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      +.+|+++|+.|||||-+|-.|+++++   ..+||.|.+
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~---~eIIs~DSm   37 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLG---GEIISLDSM   37 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcC---CcEEecchh
Confidence            67999999999999999999999998   578888864

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.61  E-value=0.023  Score=48.85  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=26.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls  299 (435)
                      .+++.++|.+||||||+.+.++...+ ..+.+.++
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~   45 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILIN   45 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEET
T ss_pred             CCEEEEEccCCCccccceeeecccccccccccccc
Confidence            57899999999999999999987764 22344444

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00101 ureG urease accessory protein UreG

Probab=94.59  E-value=0.043  Score=50.98  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=21.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+.++|.+||||||+.+++...++
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4678899999999999999987754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.58  E-value=0.25  Score=52.94  Aligned_cols=27  Identities=22%  Similarity=0.174  Sum_probs=23.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+..+|++|+||+||||+|+.+++.+.
T Consensus        37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~   63 (546)
T PRK14957         37 VHHAYLFTGTRGVGKTTLGRLLAKCLN   63 (546)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356789999999999999999998654

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=94.56  E-value=0.61  Score=46.83  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..++++|+||+||||+|+.+++.+.
T Consensus        36 ~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        36 AHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            56889999999999999999987753

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.54  E-value=0.022  Score=50.81  Aligned_cols=24  Identities=46%  Similarity=0.548  Sum_probs=21.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ++.++|.+||||||+++++...+.
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~   24 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALK   24 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999988754

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=94.51  E-value=0.31  Score=49.26  Aligned_cols=26  Identities=19%  Similarity=0.242  Sum_probs=22.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++++|++||||||+.+.+....+
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            47899999999999999999887554

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.50  E-value=0.74  Score=49.80  Aligned_cols=27  Identities=19%  Similarity=0.164  Sum_probs=23.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+..++++|++|+||||+|+.+++.+.
T Consensus        34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   60 (584)
T PRK14952         34 INHAYLFSGPRGCGKTSSARILARSLN   60 (584)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            467889999999999999999998754

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=94.50  E-value=0.02  Score=54.02  Aligned_cols=32  Identities=19%  Similarity=0.415  Sum_probs=20.8

Q ss_pred             EEEEccCCCChhHHHHHH---HhhCCCccEEEeccH
Q 013831          269 MMMVGLPASGKTTWAEKW---VKDHPEKRYILLGTN  301 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l---~~~~~~~~~~~ls~D  301 (435)
                      -+++|+|||||||+....   .+..+ .++.+++-|
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~g-r~~~vVNLD   39 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIG-RPVAVVNLD   39 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhC-CceEEEecC
Confidence            367899999999997544   33332 224555555

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=94.49  E-value=0.034  Score=55.53  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=25.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      -|++.|+||+||||+|+.+++.++.. ++.++-
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l~~~-~~rV~~   97 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARLNWP-CVRVNL   97 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHHCCC-eEEEEe
Confidence            48899999999999999999987632 444433

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=94.46  E-value=0.038  Score=52.58  Aligned_cols=36  Identities=11%  Similarity=0.205  Sum_probs=25.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ..++++.|.||+||||+|.+++...  ++.....++++
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            5699999999999999987765432  23335555553

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=94.44  E-value=0.037  Score=54.69  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=29.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      .++|+++|+.|||||.+|-.+++.+    ..+||.|..
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~~----~eIIsaDS~   37 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKGK----AEIINVDSI   37 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC----CcEEeccHH
Confidence            4699999999999999999999984    268888864

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=94.42  E-value=0.031  Score=46.66  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |++.|.||+||||+.+.+...
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            678999999999999999964

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK06835 DNA replication protein DnaC; Validated

Probab=94.41  E-value=0.48  Score=47.59  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=30.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~  307 (435)
                      .-+++.|.||+|||++|..++..+-  +..++.++.+++...+
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l  226 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL  226 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence            5689999999999999999887642  2346667776665554

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=94.41  E-value=0.46  Score=53.82  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.9

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      ++++|.||+||||+|+.++...
T Consensus       211 ~lLvG~pGvGKTal~~~La~~i  232 (852)
T TIGR03345       211 PILTGEAGVGKTAVVEGLALRI  232 (852)
T ss_pred             eeEECCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999865

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=94.40  E-value=0.03  Score=57.66  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=25.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~l  298 (435)
                      +.-|+|.|+||+||||+|+.+++.+.. .++.+
T Consensus        47 p~~ILLiGppG~GKT~lAraLA~~l~~-~fi~v   78 (441)
T TIGR00390        47 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKV   78 (441)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC-eEEEe
Confidence            356899999999999999999998752 24444

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=94.35  E-value=0.037  Score=57.03  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=26.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      +.-|+|+|+||+||||+|+.+++.+. ..++.++.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~-~~fi~vD~   83 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLAN-APFIKVEA   83 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC-Chheeecc
Confidence            35689999999999999999998875 23555543

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=0.067  Score=57.88  Aligned_cols=43  Identities=16%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      -+..+++++|+||.|||++++.+++.++. .|+++|---+|++-
T Consensus       348 ~kGpILcLVGPPGVGKTSLgkSIA~al~R-kfvR~sLGGvrDEA  390 (782)
T COG0466         348 LKGPILCLVGPPGVGKTSLGKSIAKALGR-KFVRISLGGVRDEA  390 (782)
T ss_pred             CCCcEEEEECCCCCCchhHHHHHHHHhCC-CEEEEecCccccHH
Confidence            34579999999999999999999999874 48888875555543

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=94.29  E-value=0.031  Score=59.59  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++++|+||+||||+|+.+++.+.
T Consensus       103 ~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        103 KQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHH
Confidence            46999999999999999999987654

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=94.29  E-value=0.039  Score=56.26  Aligned_cols=29  Identities=28%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK  293 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~  293 (435)
                      .+.+|.++|++||||||+++++.+.+..+
T Consensus         4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~   32 (369)
T PRK14490          4 HPFEIAFCGYSGSGKTTLITALVRRLSER   32 (369)
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence            46789999999999999999999887643

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=94.28  E-value=0.65  Score=50.22  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..+++.|+||+||||+|+.+++.+.
T Consensus        38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~   63 (605)
T PRK05896         38 THAYIFSGPRGIGKTSIAKIFAKAIN   63 (605)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhc
Confidence            56789999999999999999998753

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=94.28  E-value=0.093  Score=55.11  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=22.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +-++.++|+||.||||+++.+.+...
T Consensus        69 PfIvavvGPpGtGKsTLirSlVrr~t   94 (1077)
T COG5192          69 PFIVAVVGPPGTGKSTLIRSLVRRFT   94 (1077)
T ss_pred             CeEEEeecCCCCChhHHHHHHHHHHH
Confidence            56777999999999999999988764

>PRK13768 GTPase; Provisional

Probab=94.28  E-value=0.04  Score=53.22  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=26.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      +.++++.|++||||||++..++..+.  ++++.+++.|
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D   39 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD   39 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence            46889999999999999888875432  2346666555

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=94.27  E-value=0.043  Score=41.06  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=18.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~  288 (435)
                      .+.++.|..||||||+...+.-
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999877653

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=94.22  E-value=0.043  Score=58.38  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=24.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ...+++|+|+||+||||.++.+++++.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHhC
Confidence            356999999999999999999999875

>CHL00176 ftsH cell division protein; Validated

Probab=94.20  E-value=0.13  Score=56.12  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=28.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ++-+++.|+||+|||++|+.++.+.. ..++.++...+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~-~p~i~is~s~f  252 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAE-VPFFSISGSEF  252 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC-CCeeeccHHHH
Confidence            45589999999999999999998764 33666665544

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=94.19  E-value=0.098  Score=57.78  Aligned_cols=111  Identities=19%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEe--------ccHHHHHHhcc--------CCCccCC-CC-hH-HHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL--------GTNLILEQMKV--------PGLLRKH-NY-SE-RFQCL  325 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~l--------s~D~ir~~~~~--------~G~~~~~-~~-~~-~~~~~  325 (435)
                      .+.+.++|.+||||||+++-++..++ ..+-+.+        +.+.+|+.+..        .|..++. .+ .+ .-+++
T Consensus       479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i  558 (686)
T TIGR03797       479 GEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEA  558 (686)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHH
Confidence            57789999999999999999987653 2223333        33455555431        1211110 00 00 01222


Q ss_pred             HHHHHH-HHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhc-CCcEEEEEEC
Q 013831          326 MGRANA-IFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVN-FRKIAVVVFP  378 (435)
Q Consensus       326 ~~~~~~-~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~-~~~~~vv~l~  378 (435)
                      .+.++. .+.+.+ ..+..|.+.++..  .|++..+|++ +..++. +.+..++.++
T Consensus       559 ~~al~~a~l~~~i-~~lp~G~dt~ige~G~~LSGGQrQR-ialARAll~~p~iLiLD  613 (686)
T TIGR03797       559 WEAARMAGLAEDI-RAMPMGMHTVISEGGGTLSGGQRQR-LLIARALVRKPRILLFD  613 (686)
T ss_pred             HHHHHHcCcHHHH-HhccccccccccCCCCCCCHHHHHH-HHHHHHHhcCCCEEEEe
Confidence            222221 122333 2245676655543  6788888887 666665 3445555553

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK05636 replicative DNA helicase; Provisional

Probab=94.17  E-value=0.46  Score=50.53  Aligned_cols=25  Identities=20%  Similarity=0.498  Sum_probs=21.4

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      ....++++.|-||+||||||-.++.
T Consensus       263 ~~G~Liiiaarpg~GKT~~al~~a~  287 (505)
T PRK05636        263 RGGQMIIVAARPGVGKSTLALDFMR  287 (505)
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHH
Confidence            3468999999999999999887764

>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.16  E-value=0.12  Score=51.58  Aligned_cols=118  Identities=19%  Similarity=0.150  Sum_probs=66.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccC-CCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVP-GLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      .+=|++||.+||||||+...+....|. .+.+.+  ++.. ++.+. ..+-.....+....   .....+..++..|++.
T Consensus       143 ~~siii~G~t~sGKTt~lnall~~Ip~~~rivtI--Edt~-E~~~~~~n~~~l~~r~~~~~---~~~v~~~dll~aalR~  216 (312)
T COG0630         143 RKSIIICGGTASGKTTLLNALLDFIPPEERIVTI--EDTP-ELKLPHENWVQLVTREGESG---SSEVSLEDLLRAALRQ  216 (312)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEE--eccc-cccCCCCCEEEEEecCCCCC---ccccCHHHHHHHHHhc
Confidence            356889999999999999999887763 223333  3322 22222 11100000000000   1112334577888899


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHh
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKR  390 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~R  390 (435)
                      +-+.||.+.--..+... .++....-+ .+..+...+++...+|+...
T Consensus       217 rPd~IivgEvrg~e~~~-~~~a~~tGh~~isT~ha~s~~~~~~rl~~~  263 (312)
T COG0630         217 RPDYIIVGELRGREAFV-LFQAMQTGHGTISTIHADSPELVLDRLTEL  263 (312)
T ss_pred             CCCeEEEeeeecHHHHH-HHHHHhcCCCceeEEecCCHHHHHHHHhhc
Confidence            99988888744443333 344444333 45555666678888898875

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=94.16  E-value=0.045  Score=50.81  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=27.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ...++.++|+|||||||++.+++...  .+...+.++++
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            46899999999999999999887532  12335666664

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=94.15  E-value=0.034  Score=49.93  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+++++...
T Consensus         4 v~l~G~~g~GKTtl~~~~~~~   24 (180)
T cd04137           4 IAVLGSRSVGKSSLTVQFVEG   24 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999999854

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=94.12  E-value=0.45  Score=49.92  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..+++.|+||+||||+|+.+++.+.
T Consensus        39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~   64 (451)
T PRK06305         39 AHAYLFSGIRGTGKTTLARIFAKALN   64 (451)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            57789999999999999999988753

>cd01394 radB RadB

Probab=94.09  E-value=0.046  Score=51.11  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=27.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ...++++.|.|||||||++..++....  +...+.++++
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            468999999999999999999885531  2235566554

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd00154 Rab Rab family

Probab=94.09  E-value=0.038  Score=47.61  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.|||||||+..++...
T Consensus         3 i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999754

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.09  E-value=0.62  Score=50.79  Aligned_cols=27  Identities=26%  Similarity=0.170  Sum_probs=24.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+..++++|+||.||||+|+.+++.+.
T Consensus        36 l~HAyLF~GPpGvGKTTlAriLAK~Ln   62 (702)
T PRK14960         36 LHHAYLFTGTRGVGKTTIARILAKCLN   62 (702)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            357899999999999999999998764

>cd03114 ArgK-like The function of this protein family is unkown

Probab=94.08  E-value=0.044  Score=48.42  Aligned_cols=34  Identities=26%  Similarity=0.487  Sum_probs=25.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ++.++|.+||||||++..++..+  .+.++.++..|
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D   36 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID   36 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence            36789999999999999987654  12345666555

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.08  E-value=0.21  Score=58.52  Aligned_cols=112  Identities=16%  Similarity=0.233  Sum_probs=63.3

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHH--HHHhc-cCCCccC-----CCC-hHHHHHHHHHHHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI--LEQMK-VPGLLRK-----HNY-SERFQCLMGRANAIF  333 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~i--r~~~~-~~G~~~~-----~~~-~~~~~~~~~~~~~~~  333 (435)
                      +..+++.+||..|||||++...+..+++. .+.+.++....  =++-. .+|..++     ..| .++|++.++.|  ++
T Consensus       545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC--~L  622 (1381)
T KOG0054|consen  545 KKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKAC--AL  622 (1381)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHc--cC
Confidence            34689999999999999999999988763 11222222100  00000 1233222     123 34456666655  24


Q ss_pred             HHHHHHHhcCCCe-EEEeC-CCcCHHHHHHHHHHHhc-CCcEEEEEECC
Q 013831          334 DVLLSRASRTPRN-FIIDQ-TNVFKSARKRKLRLFVN-FRKIAVVVFPK  379 (435)
Q Consensus       334 ~~ll~~al~~g~~-vIlD~-Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~  379 (435)
                      ++-++. +-.|.. .|=|. .|++-.+|+| +.+++. |++..++.+++
T Consensus       623 ~~Dle~-Lp~GD~TeIGErGinLSGGQKqR-IsLARAVY~~adIYLLDD  669 (1381)
T KOG0054|consen  623 KKDLEI-LPFGDLTEIGERGINLSGGQKQR-ISLARAVYQDADIYLLDD  669 (1381)
T ss_pred             HhHHhh-cCCCCcceecCCccCCcHhHHHH-HHHHHHHhccCCEEEEcC
Confidence            444443 344543 33343 6788888887 777776 65556666654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=94.04  E-value=0.039  Score=48.46  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +=||++|..||||||+++.|...
T Consensus         2 krimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCC
Confidence            44799999999999999999764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=94.02  E-value=0.058  Score=52.23  Aligned_cols=37  Identities=14%  Similarity=0.330  Sum_probs=27.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ...+++++|.||+||||++.+++...  .+...+.++.+
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            46799999999999999999886531  22335566654

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=94.01  E-value=0.039  Score=47.57  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      +++-|.||.||||+|+.+++....
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~   25 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGL   25 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT-
T ss_pred             EeeECCCccHHHHHHHHHHHHcCC
Confidence            688999999999999999998874

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.98  E-value=0.68  Score=49.37  Aligned_cols=27  Identities=22%  Similarity=0.154  Sum_probs=23.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+..++++|+||.||||+|+.+++.+.
T Consensus        37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (509)
T PRK14958         37 LHHAYLFTGTRGVGKTTISRILAKCLN   63 (509)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence            356789999999999999999998764

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=93.97  E-value=0.047  Score=46.20  Aligned_cols=33  Identities=21%  Similarity=0.258  Sum_probs=25.2

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      |++.|.+|+||||++..++..+.  +.++.++..|
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D   36 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD   36 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            68999999999999988876432  3346667766

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=93.95  E-value=0.35  Score=50.60  Aligned_cols=110  Identities=20%  Similarity=0.205  Sum_probs=60.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHH----HHhc-cCCCccC--CC-----------Ch--HHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLIL----EQMK-VPGLLRK--HN-----------YS--ERFQC  324 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir----~~~~-~~G~~~~--~~-----------~~--~~~~~  324 (435)
                      .+.+-++|++||||||+||.+..-.+ ....++|..-+++    ++++ +.|-+.+  ..           |.  ..-++
T Consensus       362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~k  441 (580)
T COG4618         362 GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK  441 (580)
T ss_pred             CceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHH
Confidence            46788999999999999999986543 2346777554443    3443 1222110  01           11  01133


Q ss_pred             HHHHHHHH-HHHHHHHHhcCCCeEEE-e-CCCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831          325 LMGRANAI-FDVLLSRASRTPRNFII-D-QTNVFKSARKRKLRLFVN-FRKIAVVVF  377 (435)
Q Consensus       325 ~~~~~~~~-~~~ll~~al~~g~~vIl-D-~Tn~~~~~R~~~~~~~~~-~~~~~vv~l  377 (435)
                      +++.++.. .++++ ..+.+|++..| | ...++..+|++ +-+.+. |++-.+|++
T Consensus       442 IieAA~lAgvHelI-l~lP~GYdT~iG~~G~~LSgGQRQR-IaLARAlYG~P~lvVL  496 (580)
T COG4618         442 VIEAARLAGVHELI-LRLPQGYDTRIGEGGATLSGGQRQR-IALARALYGDPFLVVL  496 (580)
T ss_pred             HHHHHHHcChHHHH-HhCcCCccCccCCCCCCCCchHHHH-HHHHHHHcCCCcEEEe
Confidence            44433321 12232 23467775444 3 25577777776 666665 565566666

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=93.95  E-value=0.38  Score=52.70  Aligned_cols=28  Identities=25%  Similarity=0.254  Sum_probs=24.3

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .-+..+|++|+||+||||+|+.+++.+.
T Consensus        36 rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln   63 (709)
T PRK08691         36 RLHHAYLLTGTRGVGKTTIARILAKSLN   63 (709)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3467899999999999999999998764

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=93.94  E-value=0.046  Score=56.56  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=24.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      .-++++|+||+||||+|+.+++.+.. .++.++
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~-pf~~id  140 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDV-PFAIAD  140 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCC-Cceecc
Confidence            34789999999999999999987642 244443

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=93.94  E-value=0.055  Score=51.61  Aligned_cols=37  Identities=16%  Similarity=0.390  Sum_probs=27.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ...++++.|.|||||||+|.+++.+.  .+...+.++.+
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e   58 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE   58 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence            36799999999999999998876432  23335566653

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PHA02624 large T antigen; Provisional

Probab=93.93  E-value=0.07  Score=57.17  Aligned_cols=35  Identities=23%  Similarity=0.158  Sum_probs=28.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      +...++++.|+||||||||+..+++.+.++ .+.++
T Consensus       429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~-vlsVN  463 (647)
T PHA02624        429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGK-SLNVN  463 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCe-EEEee
Confidence            456799999999999999999999999764 33344

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=93.90  E-value=0.54  Score=51.33  Aligned_cols=27  Identities=26%  Similarity=0.198  Sum_probs=23.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -...+|++|.||+||||+|+.+++.+.
T Consensus        37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~   63 (647)
T PRK07994         37 LHHAYLFSGTRGVGKTTIARLLAKGLN   63 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            356689999999999999999998765

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=93.90  E-value=0.042  Score=46.94  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+++|.|||||||+...+....
T Consensus         4 i~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         4 IVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999998654

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK05973 replicative DNA helicase; Provisional

Probab=93.89  E-value=0.057  Score=51.61  Aligned_cols=44  Identities=9%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc----HHHHHHhc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT----NLILEQMK  308 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~----D~ir~~~~  308 (435)
                      ...++++.|.||+||||++-.++...  .+...+.+|.    +.++++|.
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~  112 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLR  112 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence            46799999999999999998876532  1233555554    35555554

>CHL00095 clpC Clp protease ATP binding subunit

Probab=93.89  E-value=0.24  Score=55.98  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =++++|+||.|||++|+.++...
T Consensus       202 n~lL~G~pGvGKTal~~~la~~i  224 (821)
T CHL00095        202 NPILIGEPGVGKTAIAEGLAQRI  224 (821)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            35799999999999999998764

>PRK08939 primosomal protein DnaI; Reviewed

Probab=93.88  E-value=0.51  Score=46.93  Aligned_cols=104  Identities=11%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhcc-CCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKV-PGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ..-+++.|.||+|||++|..++..+-  +..+..+....+...+.. .+       ..           .+.+.++ .++
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~-------~~-----------~~~~~l~-~l~  216 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSIS-------DG-----------SVKEKID-AVK  216 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHh-------cC-----------cHHHHHH-Hhc
Confidence            45689999999999999999987653  222445555555554420 00       00           0111222 236


Q ss_pred             CCCeEEEeCC---CcCHHHHHHHHHHHhc--C-CcEEEEEECC-h-HHHHHHHH
Q 013831          343 TPRNFIIDQT---NVFKSARKRKLRLFVN--F-RKIAVVVFPK-P-EDLKIRSV  388 (435)
Q Consensus       343 ~g~~vIlD~T---n~~~~~R~~~~~~~~~--~-~~~~vv~l~~-~-ee~~~R~~  388 (435)
                      .-..+|||+-   ..+...|..++..+-.  + .....++... + +++.++..
T Consensus       217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~  270 (306)
T PRK08939        217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA  270 (306)
T ss_pred             CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence            6778999984   3667777666665532  2 2444444433 4 77777663

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.87  E-value=1.1  Score=48.57  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..+|+.|+||+||||+|+.+++.+.
T Consensus        38 ~ha~Lf~GPpG~GKTtiArilAk~L~   63 (624)
T PRK14959         38 APAYLFSGTRGVGKTTIARIFAKALN   63 (624)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcc
Confidence            56799999999999999999998764

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=93.86  E-value=0.044  Score=48.22  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+++++...
T Consensus         3 i~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=93.85  E-value=0.046  Score=47.65  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+++|.||+||||++.++....
T Consensus         4 i~iiG~~~vGKTsl~~~~~~~~   25 (162)
T cd04138           4 LVVVGAGGVGKSALTIQLIQNH   25 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6788999999999999998643

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=93.85  E-value=0.049  Score=55.50  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=30.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLI  303 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~i  303 (435)
                      ...++++++|++|+||||.+.+++..+  .+.++..++.|..
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty  245 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF  245 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence            347899999999999999999988644  2234667888854

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=93.82  E-value=1.3  Score=40.36  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=22.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +..+++.|+||.||||+|+.+++.+
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~~l   38 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAKAL   38 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999999998775

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=93.82  E-value=0.049  Score=50.90  Aligned_cols=26  Identities=27%  Similarity=0.220  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++..++
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            57899999999999999999987754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=93.79  E-value=0.21  Score=55.39  Aligned_cols=110  Identities=15%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec--------cHHHHHHhcc--------CCCccCC-C-ChH--HHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG--------TNLILEQMKV--------PGLLRKH-N-YSE--RFQC  324 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls--------~D~ir~~~~~--------~G~~~~~-~-~~~--~~~~  324 (435)
                      .+.+.++|.+||||||+++-++..++ ..+-+.++        .+.+|+.++.        .|..++. . ..+  .-++
T Consensus       505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~  584 (710)
T TIGR03796       505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDAD  584 (710)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHH
Confidence            57889999999999999999987754 23344443        2344544431        1221110 0 000  0122


Q ss_pred             HHHHHHH-HHHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhcC-CcEEEEEE
Q 013831          325 LMGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVF  377 (435)
Q Consensus       325 ~~~~~~~-~~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~-~~~~vv~l  377 (435)
                      +.+.++. .+.+.+. .+..|.+.++.  ..|++..+|++ +..++.. ++..++.+
T Consensus       585 i~~al~~~~l~~~i~-~lp~gl~t~i~e~G~~LSGGQrQR-iaLARall~~p~iliL  639 (710)
T TIGR03796       585 LVRACKDAAIHDVIT-SRPGGYDAELAEGGANLSGGQRQR-LEIARALVRNPSILIL  639 (710)
T ss_pred             HHHHHHHhCCHHHHH-hCcCcccceeccCCCCCCHHHHHH-HHHHHHHhhCCCEEEE
Confidence            2222221 1223332 24567666554  37888888887 6666653 34555555

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=93.76  E-value=0.053  Score=52.67  Aligned_cols=26  Identities=35%  Similarity=0.564  Sum_probs=23.4

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ....+|.++|.+|+||||+|+.++..
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            45789999999999999999998866

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK04296 thymidine kinase; Provisional

Probab=93.73  E-value=0.054  Score=49.88  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=25.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls  299 (435)
                      ..+++++|.||+||||.+..++.+.  .++.++++.
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k   37 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK   37 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3688999999999999998887654  234455563

>cd00876 Ras Ras family

Probab=93.73  E-value=0.047  Score=47.48  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.|||||||+..++...
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999754

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=93.73  E-value=0.046  Score=53.45  Aligned_cols=26  Identities=38%  Similarity=0.549  Sum_probs=23.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +++|.++|.+||||||++.+|+..+.
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L~   26 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRLS   26 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999988765

>smart00175 RAB Rab subfamily of small GTPases

Probab=93.71  E-value=0.046  Score=47.88  Aligned_cols=21  Identities=14%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.|||||||+++++...
T Consensus         3 v~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            688999999999999999754

Rab GTPases are implicated in vesicle trafficking.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=93.69  E-value=0.73  Score=50.06  Aligned_cols=28  Identities=25%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .-+.-+|++|++|.||||+|+.+++.+.
T Consensus        44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~   71 (598)
T PRK09111         44 RIAQAFMLTGVRGVGKTTTARILARALN   71 (598)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence            3456789999999999999999998764

>PRK08760 replicative DNA helicase; Provisional

Probab=93.67  E-value=0.56  Score=49.55  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=27.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D  301 (435)
                      ...++++.|-||.||||||-.++...   .+..+..+|.+
T Consensus       228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE  267 (476)
T PRK08760        228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME  267 (476)
T ss_pred             CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence            36899999999999999998887532   12335566653

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=93.67  E-value=0.32  Score=43.48  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=24.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      -.+.|.+.|.--|||||++++++...+.
T Consensus         7 F~K~VailG~ESsGKStLv~kLA~~fnt   34 (187)
T COG3172           7 FVKTVAILGGESSGKSTLVNKLANIFNT   34 (187)
T ss_pred             hheeeeeecCcccChHHHHHHHHHHhCC
Confidence            4678899999999999999999988763

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.67  E-value=0.054  Score=51.13  Aligned_cols=25  Identities=32%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..+++.+.|+.||||||+|..++-.
T Consensus        29 ~GEvhaiMGPNGsGKSTLa~~i~G~   53 (251)
T COG0396          29 EGEVHAIMGPNGSGKSTLAYTIMGH   53 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999999864

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=93.65  E-value=0.055  Score=50.38  Aligned_cols=26  Identities=27%  Similarity=0.380  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++..++
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999998753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=93.65  E-value=0.19  Score=53.23  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=27.1

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~l  298 (435)
                      ..+..+++.|+||+|||.+|+.++.+... +++.+
T Consensus       274 ~~~~giLl~GpPGtGKT~lAkava~~~~~-~fi~v  307 (494)
T COG0464         274 RPPKGVLLYGPPGTGKTLLAKAVALESRS-RFISV  307 (494)
T ss_pred             CCCCeeEEECCCCCCHHHHHHHHHhhCCC-eEEEe
Confidence            44668999999999999999999996652 25544

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.65  E-value=0.057  Score=49.70  Aligned_cols=26  Identities=12%  Similarity=0.132  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|.+||||||+.+.++...+
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         26 SAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999987653

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=93.64  E-value=0.63  Score=48.30  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=26.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~  300 (435)
                      ..+++++.|.||+||||||-.++...   .+..+..+|.
T Consensus       193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl  231 (421)
T TIGR03600       193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL  231 (421)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            36899999999999999999887432   1334556664

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=93.62  E-value=0.05  Score=47.55  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+++++...
T Consensus         3 i~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           3 VIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=93.61  E-value=0.053  Score=50.36  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~  288 (435)
                      .++++++|++||||||+.+.+..
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            38999999999999999998863

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.61  E-value=0.059  Score=50.08  Aligned_cols=27  Identities=26%  Similarity=0.215  Sum_probs=23.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+++.++...+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            358899999999999999999987643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG5324 Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=0.74  Score=47.78  Aligned_cols=145  Identities=16%  Similarity=0.145  Sum_probs=83.3

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ..++..+++-+..-|+||||.|+.|.+...   |-++-.|.+      .|-     -.+   +....       .++...
T Consensus       370 ~~~e~tll~pia~igcgktt~ak~l~~lf~---w~~vqnd~l------sgk-----~~~---k~~~k-------ai~~~~  425 (758)
T COG5324         370 CGKEFTLLVPIATIGCGKTTVAKILEKLFG---WPVVQNDNL------SGK-----GGP---KRFAK-------AIIEEF  425 (758)
T ss_pred             ccceeEEEEEEEEeccCcccHHHHHHHHcC---CcccccCCC------CCC-----Cch---hHHHH-------HHHHHh
Confidence            345667888889999999999999988775   656555542      231     011   11111       222233


Q ss_pred             cCCC-eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEEC---C---hHHHHHHHHHhhhhcC-CCCc------HHHHHHH
Q 013831          342 RTPR-NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFP---K---PEDLKIRSVKRFKEMG-KEVP------ADAVNNM  406 (435)
Q Consensus       342 ~~g~-~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~---~---~ee~~~R~~~R~~~~~-~~vp------~~vi~~m  406 (435)
                      +.|. .|++|..|.-..+|..+-..+-.+- .+.+|-+|   +   |+-.++|..+|-.... -.++      ..++..+
T Consensus       426 r~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f  505 (758)
T COG5324         426 RNGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTF  505 (758)
T ss_pred             ccCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHH
Confidence            5665 6777878877777765322222222 34555442   2   4667889888832110 1122      3567777


Q ss_pred             HhcccCCCCCCCCCCCcccceecccc
Q 013831          407 LANYVLPVNKDTPGSDELFDQRRGSA  432 (435)
Q Consensus       407 ~~~fe~P~~~~~~~~~e~Fd~i~~~~  432 (435)
                      ++++.+-..  .-..+.-||.|+.+-
T Consensus       506 ~k~ykp~~~--~~~~d~~~d~~ield  529 (758)
T COG5324         506 YKQYKPFDA--GNKHDANYDDIIELD  529 (758)
T ss_pred             HHhcCCCCC--CCCccccccceeecc
Confidence            888875543  233456678777553

>TIGR00665 DnaB replicative DNA helicase

Probab=93.59  E-value=0.92  Score=47.20  Aligned_cols=37  Identities=16%  Similarity=0.346  Sum_probs=26.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D  301 (435)
                      ...++++.|.||+|||||+..++...   .+..+..+|.+
T Consensus       194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE  233 (434)
T TIGR00665       194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE  233 (434)
T ss_pred             CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence            36899999999999999998876531   22335556553

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=93.58  E-value=0.059  Score=50.10  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++..++
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999997653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=93.56  E-value=0.042  Score=43.38  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ++++.|.+|+||||++..++..+.
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~   24 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALA   24 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999887653

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=93.56  E-value=0.059  Score=50.44  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+++.++|++||||||+.+.++...
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            5789999999999999999998764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=93.56  E-value=0.057  Score=50.41  Aligned_cols=26  Identities=23%  Similarity=0.380  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999987653

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=93.52  E-value=0.06  Score=49.23  Aligned_cols=26  Identities=23%  Similarity=0.216  Sum_probs=22.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999987643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd01862 Rab7 Rab7 subfamily

Probab=93.51  E-value=0.052  Score=48.03  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+++++...
T Consensus         3 i~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            688999999999999999754

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=93.51  E-value=0.13  Score=57.03  Aligned_cols=110  Identities=20%  Similarity=0.247  Sum_probs=57.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEecc--------HHHHHHhcc--------CCCccCC-CCh-H--HHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT--------NLILEQMKV--------PGLLRKH-NYS-E--RFQC  324 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~--------D~ir~~~~~--------~G~~~~~-~~~-~--~~~~  324 (435)
                      .+.+.++|++||||||+++-+...++. .+-+.++.        +.+++.+..        .|..++. .+. +  .-++
T Consensus       507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~  586 (711)
T TIGR00958       507 GEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEE  586 (711)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHH
Confidence            578999999999999999999987642 23344432        334444331        1111110 000 0  0112


Q ss_pred             HHHHHHH-HHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831          325 LMGRANA-IFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVN-FRKIAVVVF  377 (435)
Q Consensus       325 ~~~~~~~-~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~-~~~~~vv~l  377 (435)
                      +.+.++. .+.+.++ .+..|.+..+..  .+++..+|++ +..++. +++..++.+
T Consensus       587 i~~al~~a~l~~~i~-~lp~GldT~ige~G~~LSGGQkQR-lalARALl~~p~ILIL  641 (711)
T TIGR00958       587 IMAAAKAANAHDFIM-EFPNGYDTEVGEKGSQLSGGQKQR-IAIARALVRKPRVLIL  641 (711)
T ss_pred             HHHHHHHcCCHHHHH-hCCCccCCcccCCCCcCCHHHHHH-HHHHHHHhcCCCEEEE
Confidence            2222211 1222332 245676666654  6788888886 666655 334455555

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=93.50  E-value=0.06  Score=50.16  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=22.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+++.++|++||||||+++.++...
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5789999999999999999998765

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=93.49  E-value=0.062  Score=50.07  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=23.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+.+.++...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            357899999999999999999987643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=93.48  E-value=0.055  Score=47.37  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||++.++...
T Consensus         4 i~i~G~~~vGKTsl~~~~~~~   24 (163)
T cd04136           4 VVVLGSGGVGKSALTVQFVQG   24 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999998854

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.48  E-value=0.061  Score=50.85  Aligned_cols=26  Identities=19%  Similarity=0.196  Sum_probs=23.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++..++
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          31 GEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999987754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=93.47  E-value=0.06  Score=51.22  Aligned_cols=26  Identities=19%  Similarity=0.210  Sum_probs=23.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++..++
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        28 GEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            57899999999999999999987653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=93.46  E-value=0.064  Score=50.22  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          26 GEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            58999999999999999999986543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=93.45  E-value=0.059  Score=56.05  Aligned_cols=38  Identities=26%  Similarity=0.261  Sum_probs=29.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~i  303 (435)
                      .++++++|++|+||||.+.+++..+    .+.++..|+.|..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~  262 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY  262 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence            4689999999999999998887543    2345777888864

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.45  E-value=0.3  Score=47.25  Aligned_cols=103  Identities=19%  Similarity=0.251  Sum_probs=57.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEecc--------HHH----HHHhccCCCcc----CCC--C-hHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT--------NLI----LEQMKVPGLLR----KHN--Y-SERFQC  324 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~--------D~i----r~~~~~~G~~~----~~~--~-~~~~~~  324 (435)
                      +.+.+-++|-+||||||+++.+..-.+. .+-+.+.-        +..    .+.+...|...    .|.  + +.+.+ 
T Consensus        38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ-  116 (268)
T COG4608          38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ-  116 (268)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh-
Confidence            4688999999999999999999876541 22333332        111    11121233211    111  1 11111 


Q ss_pred             HHHHHHHHHHHHHHHHh-cCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEE
Q 013831          325 LMGRANAIFDVLLSRAS-RTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVF  377 (435)
Q Consensus       325 ~~~~~~~~~~~ll~~al-~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l  377 (435)
                               +-.+.+|+ -+...+|.|-  ++++.+.|.+.+.++.+.+   .+.++|+
T Consensus       117 ---------Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI  166 (268)
T COG4608         117 ---------RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI  166 (268)
T ss_pred             ---------hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE
Confidence                     11233443 4566777775  6788888888888777542   3444444

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.45  E-value=0.062  Score=50.94  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+++.++..++
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          26 GEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999997653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=93.44  E-value=0.053  Score=54.30  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ...+++.|+||+||||+|+.++..+.
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~   76 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMG   76 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhC
Confidence            34678999999999999999998876

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=93.43  E-value=0.06  Score=50.98  Aligned_cols=26  Identities=23%  Similarity=0.133  Sum_probs=23.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          26 GEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            57899999999999999999987643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=93.41  E-value=0.058  Score=47.30  Aligned_cols=21  Identities=14%  Similarity=0.403  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||++.++...
T Consensus         3 i~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999865

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=93.41  E-value=0.073  Score=50.09  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=28.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ...++++.|.||+||||++..++...  .+...+.++++
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            46899999999999999999987532  12346667665

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=93.40  E-value=0.066  Score=49.85  Aligned_cols=26  Identities=23%  Similarity=0.220  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++..++
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          26 GEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999997653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=93.37  E-value=0.06  Score=50.15  Aligned_cols=35  Identities=20%  Similarity=0.141  Sum_probs=26.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls  299 (435)
                      ..+++.++|++||||||+.+.++...+ ..+-+.++
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~   59 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF   59 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEEC
Confidence            368899999999999999999987643 23334443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=93.37  E-value=0.068  Score=53.68  Aligned_cols=27  Identities=19%  Similarity=0.347  Sum_probs=24.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +.+|+++.|++|+||||+++.|.+.+.
T Consensus        87 ~krIl~L~GPvg~GKSsl~~~Lk~~le  113 (358)
T PF08298_consen   87 RKRILLLLGPVGGGKSSLAELLKRGLE  113 (358)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            468999999999999999999987765

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=93.36  E-value=0.064  Score=50.27  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+++.++|++||||||+.+.++...
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            5789999999999999999998754

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=93.34  E-value=0.093  Score=49.47  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=26.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh--CCCccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD--HPEKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~--~~~~~~~~ls~  300 (435)
                      ...++++.|.||+||||++..++..  .++...+.++.
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~   56 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT   56 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence            3689999999999999999887532  22334555554

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=93.34  E-value=0.07  Score=50.27  Aligned_cols=26  Identities=31%  Similarity=0.349  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+++.++..++
T Consensus        33 Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          33 GQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCccC
Confidence            58899999999999999999987654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd04177 RSR1 RSR1 subgroup

Probab=93.33  E-value=0.06  Score=47.86  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+++++...
T Consensus         4 i~liG~~~~GKTsli~~~~~~   24 (168)
T cd04177           4 IVVLGAGGVGKSALTVQFVQN   24 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=93.32  E-value=0.27  Score=53.94  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=28.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      =++++|+||+||||+|+.++.+.+. .++.++...+.
T Consensus       187 gill~G~~G~GKt~~~~~~a~~~~~-~f~~is~~~~~  222 (644)
T PRK10733        187 GVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSDFV  222 (644)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHcCC-CEEEEehHHhH
Confidence            3899999999999999999988753 36677665543

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=93.31  E-value=0.063  Score=51.68  Aligned_cols=37  Identities=24%  Similarity=0.472  Sum_probs=24.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ...+|=++|+||+||||+...+...+.  ++++-+|..|
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD   66 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD   66 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence            467889999999999999988876542  3334455545

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.29  E-value=0.21  Score=49.09  Aligned_cols=84  Identities=20%  Similarity=0.150  Sum_probs=42.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      .-+|++.|+.||||||-...+....+. +...+|...+=++-+  +-.  +...-.  ++-+..-...+...+..|+++.
T Consensus       125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~v--h~s--kkslI~--QREvG~dT~sF~~aLraALReD  198 (353)
T COG2805         125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYV--HES--KKSLIN--QREVGRDTLSFANALRAALRED  198 (353)
T ss_pred             CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhh--hcc--hHhhhh--HHHhcccHHHHHHHHHHHhhcC
Confidence            468999999999999977666554321 113344332211111  000  000000  1111112234556677778888


Q ss_pred             CeEEEeCCCcC
Q 013831          345 RNFIIDQTNVF  355 (435)
Q Consensus       345 ~~vIlD~Tn~~  355 (435)
                      -+||+=.---+
T Consensus       199 PDVIlvGEmRD  209 (353)
T COG2805         199 PDVILVGEMRD  209 (353)
T ss_pred             CCEEEEecccc
Confidence            88888764333

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=93.29  E-value=0.22  Score=47.94  Aligned_cols=104  Identities=17%  Similarity=0.238  Sum_probs=56.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccH----HHHHHhc--cCCCc----cCCCC-hHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN----LILEQMK--VPGLL----RKHNY-SERFQCLMGRANA  331 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D----~ir~~~~--~~G~~----~~~~~-~~~~~~~~~~~~~  331 (435)
                      ..|+++.|.||+|||+||-.++...   .+..+..+|.+    .+..++-  ..+..    +.... ...|+++.+    
T Consensus        19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~----   94 (259)
T PF03796_consen   19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQA----   94 (259)
T ss_dssp             T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHH----
T ss_pred             CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHH----
Confidence            5799999999999999998887532   12346677763    3333321  12221    01111 122222221    


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEEC
Q 013831          332 IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFP  378 (435)
Q Consensus       332 ~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~  378 (435)
                          ... .+.....+|.|....+...-...++.++.. ..+.+|+++
T Consensus        95 ----~~~-~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID  137 (259)
T PF03796_consen   95 ----AAE-KLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID  137 (259)
T ss_dssp             ----HHH-HHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred             ----HHH-HHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence                111 123444777777777777766666666543 466666663

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=93.28  E-value=0.071  Score=49.74  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=23.6

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .. +++.++|++||||||+.+.++...+
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence            35 8999999999999999999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=93.28  E-value=0.5  Score=52.26  Aligned_cols=108  Identities=16%  Similarity=0.188  Sum_probs=57.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec--------cHHHHHHhcc--------CCCccC------CCChHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG--------TNLILEQMKV--------PGLLRK------HNYSERF  322 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls--------~D~ir~~~~~--------~G~~~~------~~~~~~~  322 (435)
                      .+.+.++|.+||||||+++-++..++ ..+-+.++        .+.+|+.+..        .|..++      ..++.  
T Consensus       491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~--  568 (694)
T TIGR03375       491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADD--  568 (694)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCH--
Confidence            57889999999999999999987654 22334443        2344444331        111111      01111  


Q ss_pred             HHHHHHHHH-HHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcC-CcEEEEEE
Q 013831          323 QCLMGRANA-IFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNF-RKIAVVVF  377 (435)
Q Consensus       323 ~~~~~~~~~-~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~-~~~~vv~l  377 (435)
                      +++.+.++. .+.+.+ ..+..|.+..+..  .|++..+|++ +..++.. .+..++.+
T Consensus       569 ~~i~~a~~~~~l~~~i-~~lp~gl~T~i~e~G~~LSgGQrQR-lalARall~~p~iliL  625 (694)
T TIGR03375       569 EEILRAAELAGVTEFV-RRHPDGLDMQIGERGRSLSGGQRQA-VALARALLRDPPILLL  625 (694)
T ss_pred             HHHHHHHHHcChHHHH-HhCcccccceecCCCCCCCHHHHHH-HHHHHHHhcCCCEEEE
Confidence            222222221 123333 2345676666644  6788888886 6655543 34445555

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd00157 Rho Rho (Ras homology) family

Probab=93.28  E-value=0.062  Score=47.46  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||++.++...
T Consensus         3 i~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           3 IVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999865

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.27  E-value=0.068  Score=49.51  Aligned_cols=26  Identities=27%  Similarity=0.279  Sum_probs=23.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999987643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.26  E-value=0.07  Score=49.61  Aligned_cols=26  Identities=27%  Similarity=0.265  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        26 G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          26 GEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999987653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=93.26  E-value=0.067  Score=50.45  Aligned_cols=26  Identities=31%  Similarity=0.330  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|.+||||||+++.++..++
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        26 GEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            58899999999999999999987653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=93.26  E-value=0.07  Score=49.35  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999997654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=93.25  E-value=0.071  Score=49.93  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999987654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PLN03130 ABC transporter C family member; Provisional

Probab=93.24  E-value=0.22  Score=60.28  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..++++++|..||||||+++.+...++
T Consensus       642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~  668 (1622)
T PLN03130        642 VGSLVAIVGSTGEGKTSLISAMLGELP  668 (1622)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhc
Confidence            368899999999999999999998764

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=93.24  E-value=0.073  Score=50.27  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..+++.++|.|||||||++..++..
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999743

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=93.24  E-value=0.06  Score=47.11  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||++.++...
T Consensus         2 i~i~G~~~~GKTsl~~~~~~~   22 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHA   22 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC
Confidence            678999999999999999765

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=93.23  E-value=0.06  Score=54.38  Aligned_cols=139  Identities=19%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCcc-CCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ...|+++|.+||||||+++.++...+. .+.+.+  ++. .++.+..... ...+..  +. .......+..++..+++.
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivti--Ed~-~El~l~~~~~v~l~~~~--~~-~~~~~~t~~~ll~~~LR~  235 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITI--EDT-LELVIPHENHVRLLYSK--NG-AGLGAVTAEHLLQASLRM  235 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEE--CCC-ccccCCCCCEEEEEeec--cc-cCcCccCHHHHHHHHhcC
Confidence            356899999999999999999987664 233333  221 1222211100 000100  00 000001233466677777


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhhhhc--CCCCcHHHHHHHH-hccc
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEM--GKEVPADAVNNML-ANYV  411 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~~~~--~~~vp~~vi~~m~-~~fe  411 (435)
                      .-++|+=.=--..+... +++.+..-+  -++.+..+++.+..+|+..-....  +..++.+.+.++. ..+.
T Consensus       236 ~pD~IivGEiR~~ea~~-~l~a~~tGh~G~ltTiHa~s~~~a~~Rl~~l~~~~~~~~~~~~~~~~~~i~~~iD  307 (344)
T PRK13851        236 RPDRILLGEMRDDAAWA-YLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAID  307 (344)
T ss_pred             CCCeEEEEeeCcHHHHH-HHHHHHhCCCcEEECCCCCCHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCC
Confidence            66555433212333332 344443322  345556666677788887654321  3345666555554 4443

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=93.20  E-value=0.075  Score=47.71  Aligned_cols=109  Identities=13%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHHHHhc-cCCCccCCCChHHHHHHH-------HHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLM-------GRANAIFDVL  336 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir~~~~-~~G~~~~~~~~~~~~~~~-------~~~~~~~~~l  336 (435)
                      .+++.++|++||||||+++.++...+ ..+-+.+...   +.+. +.-... .......+.+.       ..-++..-.+
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---~~i~~~~q~~~-~~~~tv~~nl~~~~~~~LS~G~~~rv~l  102 (166)
T cd03223          27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---EDLLFLPQRPY-LPLGTLREQLIYPWDDVLSGGEQQRLAF  102 (166)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---ceEEEECCCCc-cccccHHHHhhccCCCCCCHHHHHHHHH
Confidence            57899999999999999999987754 1222333211   1111 000000 00000001110       0000011123


Q ss_pred             HHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCCcEEEEEECC
Q 013831          337 LSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPK  379 (435)
Q Consensus       337 l~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~  379 (435)
                      +...+.....+|+|-  ++++...++..++.+.+++ .+++++.-
T Consensus       103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~tiiivsh  146 (166)
T cd03223         103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG-ITVISVGH  146 (166)
T ss_pred             HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC-CEEEEEeC
Confidence            334457788999996  6688888888777777653 55555543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=93.20  E-value=0.064  Score=55.41  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .-+++.|+||+|||++|+.+++.+.
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~  141 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILN  141 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcC
Confidence            3689999999999999999998764

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=93.20  E-value=0.069  Score=50.05  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=22.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+++.++|++||||||+.+.++...
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            5789999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=93.18  E-value=0.062  Score=47.79  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .-|+++|.+||||||+.+.+...
T Consensus        15 ~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          15 PRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             cEEEEEccCCCCHHHHHHHHhcC
Confidence            34889999999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=93.17  E-value=0.071  Score=50.58  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=22.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+++.++|++||||||+++.++..+
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          27 GEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            5789999999999999999998765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09165 replicative DNA helicase; Provisional

Probab=93.15  E-value=0.88  Score=48.36  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=20.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      ...++++.|.||.||||||-.++.
T Consensus       216 ~g~livIaarpg~GKT~~al~ia~  239 (497)
T PRK09165        216 PSDLIILAGRPSMGKTALATNIAF  239 (497)
T ss_pred             CCceEEEEeCCCCChHHHHHHHHH
Confidence            358999999999999999876643

>PRK08506 replicative DNA helicase; Provisional

Probab=93.15  E-value=1  Score=47.52  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=27.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ...++++.|-||.|||+||-.++...  .++.+..+|.+
T Consensus       191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE  229 (472)
T PRK08506        191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE  229 (472)
T ss_pred             CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc
Confidence            36899999999999999998887543  22335566653

>PRK06851 hypothetical protein; Provisional

Probab=93.15  E-value=0.059  Score=54.75  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=22.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .++++|.|.||+||||+.+++...+.
T Consensus        30 ~~~~il~G~pGtGKStl~~~i~~~~~   55 (367)
T PRK06851         30 NRIFILKGGPGTGKSTLMKKIGEEFL   55 (367)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999876653

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.15  E-value=0.67  Score=50.51  Aligned_cols=27  Identities=30%  Similarity=0.252  Sum_probs=23.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      -+..+|++|+||.||||+|+.+++.+.
T Consensus        37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~   63 (620)
T PRK14954         37 VGHGYIFSGLRGVGKTTAARVFAKAVN   63 (620)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence            356689999999999999999998764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=93.14  E-value=0.075  Score=50.07  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=23.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+++.++..++
T Consensus        36 Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         36 GETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            58999999999999999999997653

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.14  E-value=0.076  Score=49.21  Aligned_cols=27  Identities=19%  Similarity=0.152  Sum_probs=23.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|.+||||||+.+.++..++
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            357899999999999999999987644

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=93.13  E-value=0.075  Score=50.32  Aligned_cols=26  Identities=31%  Similarity=0.283  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999987653

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=93.10  E-value=0.071  Score=49.51  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=16.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +.++.|+||+||||.+..+....
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            78899999999998776665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	435
3toj_A	213	SET1/ASH2 histone methyltransferase complex subun;	3e-26
3emw_A	217	SPRY domain-containing SOCS box protein 2; apoptos	4e-24
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	8e-24
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	2e-23
2jk9_A	212	SPRY domain-containing SOCS box protein 1; transcr	1e-22
2afj_A	226	Gene rich cluster, C9 gene; beta sandwich, gene re	9e-22
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	1e-17
2yyo_A	171	SPRY domain-containing protein 3; NPPSFA, national	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	4e-08
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	2e-06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	5e-06
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	6e-06

>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213

 Score =  104 bits (260), Expect = 3e-26
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 31/192 (16%)

Query: 42  QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
           +RV+L   D      I D+ L   G         +S  RA+ G+  G + F   +    P
Sbjct: 11  ERVLLALHDRAPQLKISDDRLTVVGEKG------YSMVRASHGVRKGAWYFEITVDEMPP 64

Query: 102 VDMEDTPPDQQHVCRVGTSRGDDPVGK-LGETEQSFGF-GGTGKFSHGGNFLNFGEKFGV 159
                         R+G S+    +   LG  + S+ +    G   H     ++   +G 
Sbjct: 65  ----------DTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQ 114

Query: 160 GDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHI 219
           GD +   I+L    ++  G ++          F       GV    +     E   FP I
Sbjct: 115 GDVLGFYINLPEDTISGRGSSE--------IIFYKNGVNQGVAYKDIF----EGVYFPAI 162

Query: 220 -LLKNVVVVMQF 230
            L K+  V + F
Sbjct: 163 SLYKSCTVSINF 174

>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217

 Score = 98.6 bits (245), Expect = 4e-24
 Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 32/179 (17%)

Query: 26  DDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGI 85
            + +  +      +Q++    NP DC  + ++++ GL      +   A    GAR   G 
Sbjct: 27  LEELLSAPPPDLGAQRRHG-WNPKDCSENIEVKEGGLY---FERRPVAQSTDGARGKRGY 82

Query: 86  NGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGK------LGETEQSFGF- 138
           + G + +                  +     VG +    P+        LG   +S+G+ 
Sbjct: 83  SRGLHAWEISWPL----------EQRGTHAVVGVATALAPLQTDHYAALLGSNSESWGWD 132

Query: 139 GGTGKFSHGGN--------FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
            G GK  H               GE+  V + ++  +D+E     T+G+A  G +LG A
Sbjct: 133 IGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEG---TLGYAIGGTYLGPA 188

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 96.8 bits (241), Expect = 8e-24
 Identities = 29/150 (19%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF 322
           MK  ++++ +G P SGK+TWA +++  +P   +  +  +   + +       ++ Y+++ 
Sbjct: 1   MK--KIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQSIMAHEERDEYKYTKKK 56

Query: 323 QCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPE 381
           + ++          +     + +  II  TN+    R         +  K+   VF  P 
Sbjct: 57  EGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPW 116

Query: 382 DLKI-RSVKRFKEMGKEVPADAVNNMLANY 410
              + R+ KR     K VP D + +M  + 
Sbjct: 117 TELVKRNSKRGT---KAVPIDVLRSMYKSM 143

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 98.0 bits (244), Expect = 2e-23
 Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 24/168 (14%)

Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGTNLILEQMKVPGLLRKHNYSE 320
           M D  ++++ GLP  GK+T+++   K   +     I+LG++LI E   V        + E
Sbjct: 1   MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV--------WKE 52

Query: 321 RFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPK 379
           +++            L+  A +     I+D TN + S R+  + +   +    A++    
Sbjct: 53  KYE---EFIKKSTYRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKA 108

Query: 380 PEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQ 427
             D+    ++R  E G+++P + +  M   +      D PG    +D+
Sbjct: 109 SLDV---LIRRNIERGEKIPNEVIKKMYEKF------DEPGKKYKWDE 147

>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212

 Score = 94.3 bits (234), Expect = 1e-22
 Identities = 44/249 (17%), Positives = 77/249 (30%), Gaps = 52/249 (20%)

Query: 4   AKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLK 63
           + +EL+  D  KP          D + D        Q      N  D  L+  ++++   
Sbjct: 1   SMQELQGLDYCKPTR-------LDLLLDMPPVSYDVQ-LLHSWNNNDRSLNVFVKEDDKL 52

Query: 64  SSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD 123
               H+   A      R  VG   G + +                     V  V T+   
Sbjct: 53  I--FHRHPVAQSTDAIRGKVGYTRGLHVWQITW--------AMRQRGTHAVVGVATADAP 102

Query: 124 ----DPVGKLGETEQSFGF-GGTGKFSHGGN---------FLNFGEKFGVGDTIICAIDL 169
                    +G   +S+G+  G  +  H G          FL   E F V D+ + A+D+
Sbjct: 103 LHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDM 162

Query: 170 ESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQ 229
           +     T+ F  +G+++G A  F                      ++P +        ++
Sbjct: 163 DDG---TLSFIVDGQYMGVA--FRGLKGK---------------KLYPVVSAVWGHCEIR 202

Query: 230 FSVEQGLIP 238
                GL P
Sbjct: 203 MRYLNGLDP 211

>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226

 Score = 92.5 bits (229), Expect = 9e-22
 Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 32/178 (17%)

Query: 27  DPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN 86
           + +  +      +Q+     NP DC  + D+++ GL      +   A    G R   G +
Sbjct: 25  EELLSAPPPDLVAQRHHG-WNPKDCSENIDVKEGGLC---FERRPVAQSTDGVRGKRGYS 80

Query: 87  GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPV------GKLGETEQSFGF-G 139
            G + +       Q                VG +    P+        LG   +S+G+  
Sbjct: 81  RGLHAWEISWPLEQRG----------THAVVGVATALAPLQADHYAALLGSNSESWGWDI 130

Query: 140 GTGKFSHGGN--------FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
           G GK  H               GE+  V + ++  +D+E     T+G++  G +LG A
Sbjct: 131 GRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEG---TLGYSIGGTYLGPA 185

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 82.0 bits (202), Expect = 1e-17
 Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF 322
           MK  ++++ +G P SGK+TWA +++  +P   +  +  +   + +       ++ Y+++ 
Sbjct: 1   MK--KIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQSIMAHEERDEYKYTKKK 56

Query: 323 QCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPE 381
           + ++          +     + +  II  TN+    R         +  K+   VF  P 
Sbjct: 57  EGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPW 116

Query: 382 D-LKIRSVKRFKEMGKEVPADAVNNMLANY 410
             L  R+ KR     K VP D + +M  + 
Sbjct: 117 TELVKRNSKR---GTKAVPIDVLRSMYKSM 143

>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171

 Score = 67.3 bits (164), Expect = 2e-13
 Identities = 32/194 (16%), Positives = 53/194 (27%), Gaps = 35/194 (18%)

Query: 50  DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPP 109
                  I  +G     L   G +       A+  +      F   IV            
Sbjct: 4   GSSGFKHILVDGDT---LSYHGNSGEVGCYVASRPLTKDSNYFEVSIVD----------S 50

Query: 110 DQQHVCRVGTSRGDDPVGKLGETEQ-SFGFGGTGKFSHGGNF--LNFGEKFGVGDTIICA 166
             +    VG       +         S  +       + G      FG K   GD I C 
Sbjct: 51  GVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCG 110

Query: 167 IDLESKPLAT--IGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNV 224
           I+  S  + T  I F KNGK +G+     +                    +FP + + ++
Sbjct: 111 IEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPDG-----------------LFPAVGMHSL 153

Query: 225 VVVMQFSVEQGLIP 238
              ++  +   L  
Sbjct: 154 GEEVRLHLNAELSG 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 65/467 (13%), Positives = 127/467 (27%), Gaps = 130/467 (27%)

Query: 5   KRELELPD-GDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLK 63
               +  D  D P+S++ K ++D  +     S         +            ++  ++
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLF-----WTLLSKQEEMVQ 80

Query: 64  S--SGLHQEGFAYCWSGARANV---GINGGKYCFGCKIVSTQPVDMEDTPP-DQQHVCRV 117
                + +  + +  S  +       +    Y      +  +     D     + +V R+
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQRDRLYNDNQVFAKYNVSRL 134

Query: 118 GTSRGDDPVGKLGETEQS---------FGFGGTGK----------------FSHGGNFLN 152
                  P  KL +              G  G+GK                      +LN
Sbjct: 135 ------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 153 FGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCE 212
                     +        + L  + +  +  W   +         +  + + ++ R  +
Sbjct: 189 LKNCNSPETVL--------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLK 239

Query: 213 SAVFPHIL--LKNVVVVMQFSVEQGLIPVEGYKSWV-SALDDGNSVLGPTFCNMKDCEVM 269
           S  + + L  L NV                   +   +A +               C+++
Sbjct: 240 SKPYENCLLVLLNV-----------------QNAKAWNAFNLS-------------CKIL 269

Query: 270 MMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCL 325
           +         TT   K V D           L   ++ L   +V  LL K     R Q L
Sbjct: 270 L---------TT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDL 318

Query: 326 MGRANAIFDVLLSRASRTPRNFI--IDQT-NVFKSARKRKLRLFVN------FRKI--AV 374
                      LS  + + R+ +   D   +V        +   +N      +RK+   +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 375 VVFPKPEDLKIRSVKRFK----EMGKEVPADAVNNMLANYVLPVNKD 417
            VF  P    I           ++ K      VN  L  Y L V K 
Sbjct: 379 SVF--PPSAHI-PTILLSLIWFDVIKSDVMVVVNK-LHKYSL-VEKQ 420

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 37/292 (12%), Positives = 77/292 (26%), Gaps = 103/292 (35%)

Query: 202 VDSAVKERQCESAV---FPHILLKNVVVVMQFSVEQGL-------------------IPV 239
           +D  +  +   S     F  +L K   +V +F VE+ L                   +  
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 240 EGYKSWVSALDDGNSVLGPTF--------------CNMKDCEVMMMVGLPASGKTTWAEK 285
             Y      L + N V                     ++  + +++ G+  SGKT  A  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169

Query: 286 WVKDHPEKR-------YILLG----TNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFD 334
               +  +        ++ L        +LE +               Q L+ + +  + 
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---------------QKLLYQIDPNWT 214

Query: 335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKI-------RS 387
                +S               S +    RL     K      P    L +       ++
Sbjct: 215 SRSDHSSNIKLR--------IHSIQAELRRLL--KSK------PYENCLLVLLNVQNAKA 258

Query: 388 VKRFKEMG---------KEVPADAVNNMLANYVLPVNKDTPG-----SDELF 425
              F  +          K+V  D ++     ++  ++  +          L 
Sbjct: 259 WNAF-NLSCKILLTTRFKQV-TDFLSAATTTHI-SLDHHSMTLTPDEVKSLL 307

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 60/495 (12%), Positives = 132/495 (26%), Gaps = 196/495 (39%)

Query: 5   KRELELPDG---------DKPESVVKK-----AKVDDPV---SDSSASGP------RSQK 41
           K + ++            + PE+V++       ++D      SD S++        +++ 
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 42  QRVVLNP--ADC--DLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKI- 96
           +R++ +    +C   L  ++++            F                     CKI 
Sbjct: 235 RRLLKSKPYENCLLVLL-NVQNAK------AWNAFN------------------LSCKIL 269

Query: 97  VSTQPVDMED--TPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFG 154
           ++T+   + D  +     H+     S    P     E +                +L+  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVKSLLL-----------KYLDCR 314

Query: 155 EKFGVGDTIICAIDL--ESK---PLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKER 209
            +           DL  E     P                         L ++  ++++ 
Sbjct: 315 PQ-----------DLPREVLTTNPRR-----------------------LSIIAESIRDG 340

Query: 210 QCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVM 269
                 + H+    +  +++ S+   L P E Y+     L    SV            + 
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNV-LEPAE-YRKMFDRL----SVF------PPSAHIP 388

Query: 270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA 329
            ++ L       W +  +K             +++ ++    L+ K              
Sbjct: 389 TIL-L----SLIWFDV-IKSDVM---------VVVNKLHKYSLVEKQPKESTIS------ 427

Query: 330 NAIFDVLLSRASRTPRNF------IIDQTNVFKSARKRKL-------------------- 363
             I  + L        N       I+D  N+ K+     L                    
Sbjct: 428 --IPSIYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 364 ----------RLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNM--LANYV 411
                      +F++FR +           KIR                +N +  L  Y 
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQ---------KIRHDS----TAWNASGSILNTLQQLKFYK 531

Query: 412 LPVNKDTPGSDELFD 426
             +  + P  + L +
Sbjct: 532 PYICDNDPKYERLVN 546

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Length = 416

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 31/160 (19%)

Query: 258 PTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHN 317
            +     + EV++ VG P +GK+T+ ++ +       Y+ +  + +    +     +   
Sbjct: 250 SSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTLGSWQRCVSSCQA-- 304

Query: 318 YSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVV 376
                                 A R  +  +ID TN    +R R ++   +         
Sbjct: 305 ----------------------ALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFN 342

Query: 377 FPKPEDL-KIRSVKR--FKEMGKEVPADAVNNMLANYVLP 413
           F    +  +  +  R         V    + +    +  P
Sbjct: 343 FCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPP 382

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 8/167 (4%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG 327
            +++ G   +GKTT      K+      I+ G +   +      L +++           
Sbjct: 34  AILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYT-KD 92

Query: 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN--FRKIAVVVFPKPEDLKI 385
            A  + + L+++ S    N +I+ T       K+  +L  N  +     ++  KPE   +
Sbjct: 93  FAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYL 152

Query: 386 RSVKRFKEMGKEVPADAVNNMLANYV-----LPVNKDTPGSDELFDQ 427
            ++ R++E+    P  A      ++      L  N        +F++
Sbjct: 153 STLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFER 199

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 46.9 bits (110), Expect = 5e-06
 Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 12/170 (7%)

Query: 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM 326
              ++ G P SGKT+     + +  +   I++  +   +Q      L K    +  + + 
Sbjct: 34  TAFLLGGQPGSGKTS-LRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVT 92

Query: 327 GRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN--FRKIAVVVFPKPEDLK 384
             +N + + ++SR S    N +I+ T        +   +     +     V+     +  
Sbjct: 93  PYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSY 152

Query: 385 IRSVKRFKEMGKE-------VPADAVNNMLANYVLPVNKDTPGSDELFDQ 427
           + +++R++ M  +        P  A + ++ N  LP N +T     LF  
Sbjct: 153 LGTIERYETMYADDPMTARATPKQAHDIVVKN--LPTNLETLHKTGLFSD 200

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG 327
           ++++ G PA+GKTT ++         R  LL  +   E M          +S R    +G
Sbjct: 7   LIIVTGHPATGKTTLSQALAT---GLRLPLLSKDAFKEVMFDGLGWSDREWSRR----VG 59

Query: 328 RANAIFDVLLSRASRTPR---NFIIDQTNVFKSARKR--KLRLFVNFRKIAVVVFPKPED 382
                  +L   A+   +   + I++         +R   L     F  I +      + 
Sbjct: 60  A--TAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117

Query: 383 LKIRSVKRFKE 393
           L  R + R  +
Sbjct: 118 LVERILSRIAQ 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	435
3toj_A	213	SET1/ASH2 histone methyltransferase complex subun;	100.0
2yyo_A	171	SPRY domain-containing protein 3; NPPSFA, national	100.0
3emw_A	217	SPRY domain-containing SOCS box protein 2; apoptos	99.9
2jk9_A	212	SPRY domain-containing SOCS box protein 1; transcr	99.9
2afj_A	226	Gene rich cluster, C9 gene; beta sandwich, gene re	99.85
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.69
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.53
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.51
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.42
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.39
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.31
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.28
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.25
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.24
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.2
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.2
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.17
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.15
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.12
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.1
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.1
2wl1_A	191	Pyrin, marenostrin; amyloidosis, polymorphism, cyt	99.02
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.02
2fbe_A	201	Predicted: similar to RET finger protein-like 1; d	99.01
2vok_A	188	52 kDa RO protein; polymorphism, immune system, me	99.01
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.0
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.0
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.99
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.98
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.97
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.96
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.95
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.94
3uv9_A	186	TRIM5alpha, tripartite motif-containing protein 5;	98.91
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.91
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.9
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.86
3kb5_A	193	Tripartite motif-containing protein 72; B30.2, gus	98.86
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.84
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.83
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.81
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.81
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.8
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.75
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.74
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.74
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.71
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.7
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.69
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.68
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.68
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.61
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.59
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.59
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.59
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.58
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.58
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.55
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.51
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.49
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.47
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.45
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.45
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.44
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.44
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.43
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.42
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.38
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.38
1via_A	175	Shikimate kinase; structural genomics, transferase	98.36
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.35
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.29
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.28
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.26
4b3n_A	602	Maltose-binding periplasmic protein, tripartite mo	98.26
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.25
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.23
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.22
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.21
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.2
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.2
2e63_A	170	KIAA1787 protein; structure genomics, neuralized d	98.18
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.18
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.16
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.15
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.11
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.09
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.09
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.06
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.06
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.05
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.03
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.03
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.97
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.96
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.94
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.92
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.91
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.9
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.89
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.89
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.88
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.75
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.74
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.73
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.72
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.71
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.7
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.7
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.62
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.56
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.53
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.23
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.21
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.15
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.13
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.13
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.08
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.08
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.04
2yue_A	168	Protein neuralized; structure genomics, NEUZ(NHR)	97.0
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.96
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.92
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.86
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.84
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.84
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.81
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.81
3bos_A	242	Putative DNA replication factor; P-loop containing	96.76
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.65
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.63
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.51
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	96.46
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	96.45
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.44
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.38
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.37
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.36
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.29
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	96.21
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.2
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.18
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.14
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.13
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.09
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.06
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.06
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.0
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.94
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.92
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	95.79
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.77
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.75
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.75
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.74
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.73
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.72
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.72
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.72
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.7
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.69
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.66
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.64
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.63
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.61
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.58
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.55
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.53
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.49
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.49
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.48
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.47
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.46
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.45
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.44
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.42
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.38
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.3
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.29
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.28
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.23
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.23
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.21
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.21
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.2
3pvs_A	447	Replication-associated recombination protein A; ma	95.17
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.15
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.15
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.13
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.12
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.02
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.98
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.98
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.98
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.91
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.87
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.86
3co5_A	143	Putative two-component system transcriptional RES	94.85
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.85
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.84
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.78
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	94.76
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	94.69
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.68
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.67
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.63
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.59
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.59
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.58
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.58
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.58
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.57
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.56
2og2_A	359	Putative signal recognition particle receptor; nuc	94.53
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	94.48
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.47
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.47
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.36
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	94.27
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	94.26
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.25
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.23
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.23
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.19
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.17
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.16
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.13
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.07
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.06
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.05
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.04
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.02
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.0
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	93.99
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.94
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.93
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.9
2xxa_A	433	Signal recognition particle protein; protein trans	93.8
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.76
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.76
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	93.75
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	93.74
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.73
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.69
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	93.69
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.69
2qgz_A	308	Helicase loader, putative primosome component; str	93.69
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	93.68
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.65
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.6
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.59
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.55
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.54
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.49
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.45
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.35
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.34
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	93.33
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	93.33
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.28
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.27
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.25
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	93.24
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	93.23
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.22
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.22
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.21
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	93.2
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.19
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	93.16
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.15
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.15
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.14
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	93.12
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.09
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.05
1g6h_A	257	High-affinity branched-chain amino acid transport	93.04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.04
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.02
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.99
2r44_A	331	Uncharacterized protein; putative ATPase, structur	92.98
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.97
1sgw_A	214	Putative ABC transporter; structural genomics, P p	92.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	92.96
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	92.95
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.95
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	92.95
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	92.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.9
2hf9_A	226	Probable hydrogenase nickel incorporation protein	92.88
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.84
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	92.82
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.81
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	92.8
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	92.8
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	92.77
2z43_A	324	DNA repair and recombination protein RADA; archaea	92.76
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.76
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.73
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.72
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.69
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.69
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	92.68
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.67
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	92.67
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.67
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.65
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.64
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.63
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	92.61
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.61
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	92.6
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.53
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	92.52
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.51
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.51
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	92.5
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.49
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	92.49
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.48
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.48
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.47
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	92.41
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.38
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.37
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.36
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.35
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	92.34
3kta_A	182	Chromosome segregation protein SMC; structural mai	92.32
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.25
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	92.25
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.24
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.23
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	92.23
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	92.22
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.22
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.21
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	92.2
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	92.2
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.18
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	92.16
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.16
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	92.13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.12
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	92.11
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.11
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.1
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.05
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	92.04
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	92.03
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	92.03
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	92.03
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	92.02
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.01
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.01
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.0
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.95
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	91.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.92
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.9
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.89
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.85
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.84
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	91.84
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.82
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.8
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	91.76
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	91.76
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.75
2chq_A	319	Replication factor C small subunit; DNA-binding pr	91.7
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	91.69
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	91.69
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	91.69
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	91.65
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	91.65
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.64
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	91.61
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.6
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	91.59
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.58
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.57
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	91.52
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.5
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.47
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.45
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	91.44
1u94_A	356	RECA protein, recombinase A; homologous recombinat	91.4
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	91.37
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.36
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.35
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.34
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.32
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.31
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.31
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	91.3
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.29
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	91.26
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.25
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.23
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	91.23
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.23
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.22
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.21
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.21
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.2
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	91.13
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	91.11
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.03
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	91.01
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.98
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	90.97
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	90.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.94
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	90.94
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.89
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.88
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	90.87
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.84
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	90.82
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	90.82
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	90.8
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.79
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.76
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	90.73
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	90.71
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	90.7
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.67
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	90.65
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	90.61
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	90.58
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	90.56
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	90.54
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.48
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.47
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	90.47
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.45
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.44
2fh5_B	214	SR-beta, signal recognition particle receptor beta	90.41
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.37
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.36
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	90.33
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	90.32
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.25
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	90.16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	90.14
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	90.12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.11
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.1
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	90.04
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.01
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	89.98
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	89.95
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	89.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	89.9
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	89.88
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	89.85
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	89.84
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	89.51
2fna_A	357	Conserved hypothetical protein; structural genomic	89.49
1xp8_A	366	RECA protein, recombinase A; recombination, radior	89.48
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	89.45
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	89.37
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	89.31
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	89.3
3llu_A	196	RAS-related GTP-binding protein C; structural geno	89.22
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	89.2
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	89.16
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	89.07
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	89.05
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	89.03
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	88.99
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	88.93
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	88.91
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	88.9
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	88.83
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	88.74
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	88.7
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	88.66
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	88.51
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	88.49
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	88.45
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	88.3
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	88.27
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	88.26
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	88.25
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	88.24
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	88.21
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	88.21
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	88.19
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	88.19
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	87.96
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	87.9
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	87.86
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	87.86

>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}

Probab=100.00  E-value=4.9e-37  Score=287.12  Aligned_cols=175  Identities=25%  Similarity=0.303  Sum_probs=152.5

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR  121 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~  121 (435)
                      ..|+||+.|++++|.||+|+++++.      .++|++||||+++.+|+|||||+|....          ..++++|||++
T Consensus        11 ~~v~ld~~d~~~~l~ls~d~l~v~~------~~~~~~vra~~~v~~G~~YfEV~v~~~~----------~~~~~~iG~a~   74 (213)
T 3toj_A           11 ERVLLALHDRAPQLKISDDRLTVVG------EKGYSMVRASHGVRKGAWYFEITVDEMP----------PDTAARLGWSQ   74 (213)
T ss_dssp             CCCCEEEEEECTTSEECTTSSEEEC------CSSCEEEEESCCBSSEEEEEEEEEEECC----------TTCEEEEEEEC
T ss_pred             CeEEechhhCCCCEEEcCCCcEEEe------CCceeEEEeCCCccCCeEEEEEEEeecC----------CCceEEEEecc
Confidence            5699999999999999999999986      3689999999999999999999998742          35899999999


Q ss_pred             CCCC-CCCCCCCCcceEEe-cCCceEeCCCcccCCCCCCCCCEEEEEEecCCC-----CceeEEEEeCccceeecccccC
Q 013831          122 GDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLESK-----PLATIGFAKNGKWLGTAKQFDA  194 (435)
Q Consensus       122 ~~~~-~~~lG~d~~S~gy~-~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~-----p~~~i~ft~NG~~lg~af~~~~  194 (435)
                      ...+ ..++|+|.+||||+ .+|+++|++....||++|++||||||+||++..     +.++|+||+||+.||.||+.  
T Consensus        75 ~~~~~~~~~G~d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~--  152 (213)
T 3toj_A           75 PLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKD--  152 (213)
T ss_dssp             TTSCTTSCTTSSTTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEES--
T ss_pred             CCcccccCCCCCCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEc--
Confidence            8654 56899999999997 589999998888999999999999999999862     22589999999999999972  


Q ss_pred             CCCCccccccccccccCCCceeeEEEEc-CeEEEEEccCCCCCCCcc-ccchhhhhc
Q 013831          195 GSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVE-GYKSWVSAL  249 (435)
Q Consensus       195 ~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~~~~~p~~-g~~p~~~~~  249 (435)
                       .              ..+.|||+|++. ++++++|||+.+.|+|++ +|+|+.+..
T Consensus       153 -~--------------~~~~lyPavsl~~~~~v~~NFG~~F~~~p~~~~~~~~~~~~  194 (213)
T 3toj_A          153 -I--------------FEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMG  194 (213)
T ss_dssp             -C--------------CSSCBEEEEEEESSCEEEEECSSSCSSCCSSCCCEEGGGGG
T ss_pred             -C--------------CCCcEEEEEEcCCCCEEEEECCCCCccCCCCCceEcHHHhc
Confidence             1              146899999996 999999999976777766 799997654

>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=266.92  Aligned_cols=160  Identities=21%  Similarity=0.209  Sum_probs=132.2

Q ss_pred             CcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCC-
Q 013831           47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP-  125 (435)
Q Consensus        47 ~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~~-  125 (435)
                      |+.|++.+|.|+.|.|++++.     ...|++||||+++..|+|||||+|.+..          ..++++|||++...+ 
T Consensus         3 s~~dr~~~l~~~~d~l~~~~~-----~~~~~~vra~~p~~~g~~YfEv~i~~~~----------~~~~~~IG~a~~~~~~   67 (171)
T 2yyo_A            3 SGSSGFKHILVDGDTLSYHGN-----SGEVGCYVASRPLTKDSNYFEVSIVDSG----------VRGTIAVGLVPQYYSL   67 (171)
T ss_dssp             ---CEEESEEEETTEEEECCC-----SSCCEEEECSSCCCSSSCEEEEEEEEET----------TTCCCEEEEECTTCCT
T ss_pred             CcccCcceEEEcCCEEEEeCC-----CCceeEEEECCCCCCCCEEEEEEEEECC----------CCcEEEEEecCCCCCC
Confidence            568999999999999888763     2589999999999999999999999863          358999999997754 


Q ss_pred             CCCCCCCCcceEEec-CCceEeCC-CcccCCCCCCCCCEEEEEEecCC--CCceeEEEEeCccceeecccccCCCCCccc
Q 013831          126 VGKLGETEQSFGFGG-TGKFSHGG-NFLNFGEKFGVGDTIICAIDLES--KPLATIGFAKNGKWLGTAKQFDAGSNGLGV  201 (435)
Q Consensus       126 ~~~lG~d~~S~gy~~-~G~~~~~~-~~~~yg~~f~~gDvIGc~ld~~~--~p~~~i~ft~NG~~lg~af~~~~~~~~l~~  201 (435)
                      ..++|+|.+||||++ +|+++|+. ....||++|++||||||+||+++  .+.++|+|||||+.||+||..   .     
T Consensus        68 ~~~~G~d~~S~gy~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~---~-----  139 (171)
T 2yyo_A           68 DHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMP---M-----  139 (171)
T ss_dssp             TSCTTSSTTCEEEETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEES---S-----
T ss_pred             ccCCCccCCEEEEEcCCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecC---C-----
Confidence            568999999999998 69998874 56899999999999999999972  112799999999999999962   1     


Q ss_pred             cccccccccCCCceeeEEEEc--CeEEEEEccCCCCCCC
Q 013831          202 VDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQGLIP  238 (435)
Q Consensus       202 ~~~~~~g~~~~~~lfP~v~l~--~~~v~~nFG~~~~~~p  238 (435)
                               ....|||+|++.  +++|++|||+.+.+||
T Consensus       140 ---------~~~~lyPaV~l~~~g~~v~vNFG~~~~~pp  169 (171)
T 2yyo_A          140 ---------SPDGLFPAVGMHSLGEEVRLHLNAELSGPS  169 (171)
T ss_dssp             ---------CSSSCEEEEEECSTTEEEEEETTCCC----
T ss_pred             ---------cCCCEEEEEEEecCCCEEEEECCCCCcCCC
Confidence                     146899999998  7999999999766654

>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A

Probab=99.90  E-value=1.6e-23  Score=196.00  Aligned_cols=157  Identities=24%  Similarity=0.422  Sum_probs=130.3

Q ss_pred             CCeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 013831           41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS  120 (435)
Q Consensus        41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s  120 (435)
                      +..++|||.++.++|.||+|+++++....   ...|.+||++.++.+|+|||||+|....          ....++|||+
T Consensus        41 ~~~~tlDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vl~~~~~~sGrhYWEV~v~~~~----------~g~~~~vGv~  107 (217)
T 3emw_A           41 QRRHGWNPKDCSENIEVKEGGLYFERRPV---AQSTDGARGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGVA  107 (217)
T ss_dssp             HHHTSEEEEEECTTEEEEGGGTEEEECCB---SSCEEEEEESCCBSSSEEEEEEECCGGG----------CTTCCEEEEE
T ss_pred             ccceEeCcccCCCCEEECCCCeEEEECcc---CCCCCEEEeCCCccCccEEEEEEEcccC----------CCCceeEEEE
Confidence            46799999999999999999999876422   2458899999999999999999998531          1257999999


Q ss_pred             cCCCC------CCCCCCCCcceEEe-cCCceEeCCCc---ccCC-----CCCCCCCEEEEEEecCCCCceeEEEEeCccc
Q 013831          121 RGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNFG-----EKFGVGDTIICAIDLESKPLATIGFAKNGKW  185 (435)
Q Consensus       121 ~~~~~------~~~lG~d~~S~gy~-~~G~~~~~~~~---~~yg-----~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~  185 (435)
                      +....      ...+|++..||+|+ .+|.++|++..   ..|+     +.|..+|+|||+||++.   ++|+|++||+.
T Consensus       108 ~~~~~r~~~g~~~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~---G~LsFy~ng~~  184 (217)
T 3emw_A          108 TALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEE---GTLGYAIGGTY  184 (217)
T ss_dssp             CTTSCCEESSSCCCTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTT---TEEEEEETTEE
T ss_pred             cCccccccCCccccccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCC---CEEEEEECCeE
Confidence            87643      45799999999997 57888887653   3675     56899999999999998   89999999999


Q ss_pred             eeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEc
Q 013831          186 LGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQF  230 (435)
Q Consensus       186 lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nF  230 (435)
                      +|+||+.   .              ...+|||+|++.  +++|.++|
T Consensus       185 lg~aF~~---~--------------~~~~LyP~~sl~~g~~~v~l~~  214 (217)
T 3emw_A          185 LGPAFRG---L--------------KGRTLYPAVSAVWGQCQVRIRY  214 (217)
T ss_dssp             EEEEECC---C--------------TTCCBEEEEEECSTTCEEEEEE
T ss_pred             eEEEEEC---C--------------CCCEEEEEEEeccCCcEEEEEe
Confidence            9999972   1              256899999996  78998876

>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A

Probab=99.90  E-value=4.2e-23  Score=192.60  Aligned_cols=157  Identities=20%  Similarity=0.317  Sum_probs=128.5

Q ss_pred             CCeEEeCcCCCCCCeEEcCCC-ceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 013831           41 KQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT  119 (435)
Q Consensus        41 ~~~v~l~~~d~~~~l~is~d~-l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~  119 (435)
                      +..++||+.+++++|.||+|+ ++++....   ...|.+||++.++.+|+|||||+|....          ..+.++|||
T Consensus        30 ~~~~tldp~ta~~~L~lsed~~~~~~~~~~---~~~~~~Vlg~~~f~sGrhYWEV~v~~~~----------~~~~w~vGV   96 (212)
T 2jk9_A           30 QLLHSWNNNDRSLNVFVKEDDKLIFHRHPV---AQSTDAIRGKVGYTRGLHVWQITWAMRQ----------RGTHAVVGV   96 (212)
T ss_dssp             HHHTSEEEEEECTTEEEETTEEEEEEECCB---TTEEEEEEESCCBCSSEEEEEEECCGGG----------CTTCCEEEE
T ss_pred             ccccccChhhcCCceEEeCCCeEEEEECCC---CCccceEEcCCCccCCeEEEEEEEeccc----------CCCcEEEEE
Confidence            567999999999999999997 46653221   3579999999999999999999997521          246789999


Q ss_pred             ecCCCC------CCCCCCCCcceEEec-CCceEeCCCcc---c------CCCCCCCCCEEEEEEecCCCCceeEEEEeCc
Q 013831          120 SRGDDP------VGKLGETEQSFGFGG-TGKFSHGGNFL---N------FGEKFGVGDTIICAIDLESKPLATIGFAKNG  183 (435)
Q Consensus       120 s~~~~~------~~~lG~d~~S~gy~~-~G~~~~~~~~~---~------yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG  183 (435)
                      ++....      ...+|.+..||+|+. +|+++|++...   .      |++.|.++|+|||+||++.   ++|+|++||
T Consensus        97 ~~~~~~r~~~g~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~---G~lsFy~ng  173 (212)
T 2jk9_A           97 ATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDD---GTLSFIVDG  173 (212)
T ss_dssp             ECTTSCCEEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTT---TEEEEEETT
T ss_pred             EcCCccccccCcccccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCC---CEEEEEECC
Confidence            997643      246799999999985 78888876542   2      5778899999999999998   899999999


Q ss_pred             cceeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEc
Q 013831          184 KWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQF  230 (435)
Q Consensus       184 ~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nF  230 (435)
                      +.++.||+.   .              ...+|||++++.  +++|.+||
T Consensus       174 ~~l~~aF~~---~--------------~~~~l~P~f~l~~g~~~v~l~~  205 (212)
T 2jk9_A          174 QYMGVAFRG---L--------------KGKKLYPVVSAVWGHCEIRMRY  205 (212)
T ss_dssp             EEEEEEECC---C--------------TTCCBEEEEEECCTTCEEEEEE
T ss_pred             EEeEEEecc---C--------------CCCEEeeEEEEEcCCcEEEEEE
Confidence            999999962   1              245999999995  78999987

>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22

Probab=99.85  E-value=2.5e-21  Score=182.34  Aligned_cols=161  Identities=24%  Similarity=0.405  Sum_probs=128.4

Q ss_pred             CCCeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 013831           40 QKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT  119 (435)
Q Consensus        40 ~~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~  119 (435)
                      .+..++||+.+++++|.||+|+++++....   ...+.+||++.++.+|+|||||+|....          ..+.+.|||
T Consensus        37 ~~~~~tLDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vlg~~~f~sGrhYWEV~V~~~~----------~~~~w~vGV  103 (226)
T 2afj_A           37 AQRHHGWNPKDCSENIDVKEGGLCFERRPV---AQSTDGVRGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGV  103 (226)
T ss_dssp             HHHHHSSCCSSSCCSSEEETTTTEEECSSC---TTTSSSEEECCCCCCSEEEEEEECCCCS----------SSCCCEEEE
T ss_pred             cccccEEccccCCCCEEEeCCCEEEEECCC---CCCcCeEEECCCccCCEEEEEEEEeccC----------CCCCEEEEe
Confidence            356789999999999999999998874321   2356799999999999999999997521          136799999


Q ss_pred             ecCCCC------CCCCCCCCcceEEe-cCCceEeCCCc---ccC-----CCCCCCCCEEEEEEecCCCCceeEEEEeCcc
Q 013831          120 SRGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNF-----GEKFGVGDTIICAIDLESKPLATIGFAKNGK  184 (435)
Q Consensus       120 s~~~~~------~~~lG~d~~S~gy~-~~G~~~~~~~~---~~y-----g~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~  184 (435)
                      ++....      ...+|.+..||+|+ .+|.++|++..   ..|     +..|.++|+|||+||++.   ++|+|++||+
T Consensus       104 ~~~s~~~~r~~~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~---G~lSFy~ng~  180 (226)
T 2afj_A          104 ATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEE---GTLGYSIGGT  180 (226)
T ss_dssp             EESSCCCSSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTT---TEEEEESTTC
T ss_pred             cCCccccccccccccccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCC---CEEEEEECCe
Confidence            986542      34689999999998 47777777653   235     446899999999999998   8999999999


Q ss_pred             ceeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEccCC
Q 013831          185 WLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVE  233 (435)
Q Consensus       185 ~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nFG~~  233 (435)
                      .++.+|+..                 ...+|||++++.  +++|.++|-..
T Consensus       181 ~l~~aF~~~-----------------~~~~L~P~f~l~~g~~~v~l~~~~g  214 (226)
T 2afj_A          181 YLGPAFRGL-----------------KGRTLYPSVSAVWGQCQVRIRYMGE  214 (226)
T ss_dssp             SCSTTHHHH-----------------HHHCCEEEEEECCTTSCCEEEEESC
T ss_pred             EeEEEEEcC-----------------CCCEEEEEEEcccCCCEEEEEEcCC
Confidence            999999621                 135899999995  67888887554

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.69  E-value=2.6e-16  Score=160.93  Aligned_cols=137  Identities=18%  Similarity=0.176  Sum_probs=110.0

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ...+.+|+|+|+|||||||+|+.|++.++   +.+|+.|.+.                .|..+.+        .+..++.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~D~~~----------------~~~~~~~--------~~~~~l~  307 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTLG----------------SWQRCVS--------SCQAALR  307 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCGGGSC----------------SHHHHHH--------HHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcC---cEEEccchHH----------------HHHHHHH--------HHHHHHh
Confidence            44579999999999999999999999886   7888887631                1122222        3344567


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcC--CCCcHHHHHHHHhcccCCCCCCC
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMG--KEVPADAVNNMLANYVLPVNKDT  418 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~--~~vp~~vi~~m~~~fe~P~~~~~  418 (435)
                      .|.+||||+||.....|..+++.++.++ .+.+|+|+++ +++++|+..|.....  ..++++++.+|.+.|+.|..   
T Consensus       308 ~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~---  384 (416)
T 3zvl_A          308 QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTL---  384 (416)
T ss_dssp             TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCG---
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCc---
Confidence            8999999999999999998888777665 7788999887 899999999975332  36899999999999999976   


Q ss_pred             CCCCcccceecccc
Q 013831          419 PGSDELFDQRRGSA  432 (435)
Q Consensus       419 ~~~~e~Fd~i~~~~  432 (435)
                         .|+||.|+.+-
T Consensus       385 ---~E~fd~v~~v~  395 (416)
T 3zvl_A          385 ---AEGFLEILEIP  395 (416)
T ss_dssp             ---GGTCSEEEEEC
T ss_pred             ---ccCCcEEEEEe
Confidence               89999988653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.64  E-value=2.3e-15  Score=134.69  Aligned_cols=138  Identities=20%  Similarity=0.306  Sum_probs=100.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHh-hCCCccEEEeccHHHHHHhccCCCccC--CCChHHHHHHHHHHHHHHHHHHHHHh-
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVK-DHPEKRYILLGTNLILEQMKVPGLLRK--HNYSERFQCLMGRANAIFDVLLSRAS-  341 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~-~~~~~~~~~ls~D~ir~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~ll~~al-  341 (435)
                      +.+|+|+|+|||||||+|+.|++ .++   +.+|+.|.++..+.  +....  ..+....+...   ...+..++..++ 
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~---~~~i~~d~~r~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPG---FYNINRDDYRQSIM--AHEERDEYKYTKKKEGIV---TGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTT---EEEECHHHHHHHHT--TSCCGGGCCCCHHHHHHH---HHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCC---cEEecHHHHHHHhh--CCCccchhhhchhhhhHH---HHHHHHHHHHHHh
Confidence            46899999999999999999998 454   78999999887653  21000  12322212111   222334566666 


Q ss_pred             --cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831          342 --RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV  414 (435)
Q Consensus       342 --~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~  414 (435)
                        ..|.+||+|.++.+..+|..+.+.+..++ .+.+|++.++ +++++|+..|.   .+.++++++.++++.|+.|.
T Consensus        74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~  147 (181)
T 1ly1_A           74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREYL  147 (181)
T ss_dssp             SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG---GGCCCHHHHHHHHHHHHHHH
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc---cCCCCHHHHHHHHHHhhccC
Confidence              78999999999999988887665555544 5667888887 89999999984   24689999999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.53  E-value=7.1e-14  Score=136.00  Aligned_cols=139  Identities=20%  Similarity=0.316  Sum_probs=100.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc--CCCccCCCChHHHHHHHHHHHHHHHHHHHHHh--
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV--PGLLRKHNYSERFQCLMGRANAIFDVLLSRAS--  341 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al--  341 (435)
                      +.+|+|+|+|||||||+|+.|++.+.+  +.+|+.|.+|..+..  .|. . ..+....+...   ...+..++..++  
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~--~~~i~~D~~r~~~~~~~~g~-~-~~~~~~~~~~~---~~~~~~~~~~~l~~   74 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERD-E-YKYTKKKEGIV---TGMQFDTAKSILYG   74 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCCC-----CCHHHHHHH---HHHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCC--cEEecccHHHHHhccCCccc-c-cccchhhhhHH---HHHHHHHHHHHHhh
Confidence            468999999999999999999987532  889999988876431  110 0 01222112111   122334566667  


Q ss_pred             -cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV  414 (435)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~  414 (435)
                       ..|..||+|.++.....|..+.+.+..++ .+.+|+++++ +++++|+.+|.   .+.+++++++++++.|+.|.
T Consensus        75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~e~i~~~~~~~~~~~  147 (301)
T 1ltq_A           75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREYL  147 (301)
T ss_dssp             CTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG---GGCCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc---CCCCCHHHHHHHHHHHhccc
Confidence             78999999999999988887655555554 5678899887 89999999984   36789999999999887553

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.51  E-value=2.8e-13  Score=129.68  Aligned_cols=133  Identities=24%  Similarity=0.488  Sum_probs=95.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh---CCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD---HPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~---~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      .+.+|+|+|+|||||||+|+.+++.   .+ ..+++++.|.++..+  .+      |....+.....   .....+..++
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g-~~~i~~~~D~~~~~l--~~------~~~~~e~~~~~---~~~~~i~~~l   70 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNN-IDVIVLGSDLIRESF--PV------WKEKYEEFIKK---STYRLIDSAL   70 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEECTHHHHTTS--SS------CCGGGHHHHHH---HHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCC-CEEEEECchHHHHHH--hh------hhHHHHHHHHH---HHHHHHHHHh
Confidence            3679999999999999999999986   33 224446889887643  22      21111111111   1123444555


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV  414 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~  414 (435)
                      +. ..||+|.++.+...|..+.+.+...+ ...+|+|+++ +++++|+.+|    ++.++++.++++.+.|+.|.
T Consensus        71 ~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R----~~~~~~~~l~~~~~~~e~~~  140 (260)
T 3a4m_A           71 KN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER----GEKIPNEVIKKMYEKFDEPG  140 (260)
T ss_dssp             TT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT----TCSSCHHHHHHHHHHCCCTT
T ss_pred             hC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC----CCCCCHHHHHHHHHHhcCcc
Confidence            66 89999999999998887666655555 5678889886 8999999998    45678999999999998775

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.42  E-value=2.6e-12  Score=124.85  Aligned_cols=140  Identities=16%  Similarity=0.226  Sum_probs=91.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc---cCC-CChHHHHHHHHHHHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL---RKH-NYSERFQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~---~~~-~~~~~~~~~~~~~~~~~~~ll~~a  340 (435)
                      .+.+|+|+|+|||||||+|+.|++.++. .+++||.|.+|..+  .+..   ... .+....  ...........+++.+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~--~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~v~~~  106 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQH--PNFDELVKLYEKDVVKH--VTPYSNRMTEAIISRL  106 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTS--TTHHHHHHHHGGGCHHH--HHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhc--hhhHHHHHHccchhhhh--hhHHHHHHHHHHHHHH
Confidence            4689999999999999999999998752 37889999887542  1110   000 000000  0011112233455666


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHH----HHHHHHhhhhc---CCCCcHHHHHHHHhc
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDL----KIRSVKRFKEM---GKEVPADAVNNMLAN  409 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~----~~R~~~R~~~~---~~~vp~~vi~~m~~~  409 (435)
                      ++.|.+||||.++..+..+..+++.++..+ .+.+++|.+| +.+    .+|+..|...+   ++.+|++....+.++
T Consensus       107 l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~r  184 (287)
T 1gvn_B          107 SDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKN  184 (287)
T ss_dssp             HHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHH
T ss_pred             HhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            788999999999998877777677776654 5666777775 766    78888886543   356775555554433

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.39  E-value=9.1e-12  Score=130.67  Aligned_cols=142  Identities=16%  Similarity=0.079  Sum_probs=86.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCcc-CCCC---hHHHHHH-HHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLR-KHNY---SERFQCL-MGRANAIFDVLL  337 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~-~~~~---~~~~~~~-~~~~~~~~~~ll  337 (435)
                      .+.+|+|+|+|||||||+|++|++.++  .....+|+.|++|+++.  |... ...|   ....-.. .+.+..++..+.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~--~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~  111 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAV--KQYSSYNFFRPDNEEAMKVRKQCALAALRDVK  111 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH--SCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhc--cCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999988752  22367889999888763  2100 0011   1111111 122222233222


Q ss_pred             HHH-hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh--HHHHHHHHHhhhhcC---CCCcHHHHHHHHh
Q 013831          338 SRA-SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP--EDLKIRSVKRFKEMG---KEVPADAVNNMLA  408 (435)
Q Consensus       338 ~~a-l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~--ee~~~R~~~R~~~~~---~~vp~~vi~~m~~  408 (435)
                      ... .+.|.+||+|+||..+..|..+++.++..+ .+.++++.++  +.+.+|+.+|.....   ...+++++..+.+
T Consensus       112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~  189 (520)
T 2axn_A          112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMK  189 (520)
T ss_dssp             HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHH
T ss_pred             HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHH
Confidence            222 168999999999999999998777776554 4556666553  555566656643211   1246666666643

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.31  E-value=1.5e-11  Score=111.09  Aligned_cols=120  Identities=14%  Similarity=0.125  Sum_probs=77.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHH-HHHHHHHHHHHHHHHHHhcC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQ-CLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~ll~~al~~  343 (435)
                      .+.+|+++|+|||||||+|+.|++.++   +.+++.|.++..+.  +....  ....|. .+...+...+...+..+++.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~~D~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~   76 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLR---LPLLSKDAFKEVMF--DGLGW--SDREWSRRVGATAIMMLYHTAATILQS   76 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHH--HHHCC--CSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC---CeEecHHHHHHHHH--HhcCc--cchHHHHHhhHHHHHHHHHHHHHHHhC
Confidence            467999999999999999999999875   56788899887652  11000  111221 12212223333455556678


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhhh
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      |..||+|.++ ....+.+.+..++. .. ...+|+|+++ +++++|+.+|..
T Consensus        77 g~~vi~d~~~-~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~  127 (193)
T 2rhm_A           77 GQSLIMESNF-RVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA  127 (193)
T ss_dssp             TCCEEEEECC-CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCC-CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence            9999999998 43322222333333 33 5567888876 899999998864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.28  E-value=6.5e-11  Score=105.63  Aligned_cols=119  Identities=17%  Similarity=0.177  Sum_probs=76.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc-CCCc-cCCC-------C-hHHHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLL-RKHN-------Y-SERFQCLMGRANAIFDV  335 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~-~G~~-~~~~-------~-~~~~~~~~~~~~~~~~~  335 (435)
                      +.+|+++|+|||||||+|+.|++.++. .++.++.|.+++.+.- .+.. ....       + ...|.......    ..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   77 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPE-PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAW----AE   77 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS-CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHH----HH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC-CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHH----HH
Confidence            468999999999999999999998863 3777888988765321 0100 0000       0 12233333222    22


Q ss_pred             HHHHHhcCCCeEEEeCCCcC-HHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          336 LLSRASRTPRNFIIDQTNVF-KSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~-~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .+..+++.|.+||+|.+++. +..|..+.+.+... .+.+|++.++ +++.+|+..|
T Consensus        78 ~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~~~~e~l~~R~~~r  133 (178)
T 1qhx_A           78 GVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDL-DVLWVGVRCDGAVAEGRETAR  133 (178)
T ss_dssp             HHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTC-CEEEEEEECCHHHHHHHHHHT
T ss_pred             HHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCC-cEEEEEEECCHHHHHHHHHhh
Confidence            34445578899999998763 44455555555432 5667788776 9999999988

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.25  E-value=1.8e-11  Score=112.01  Aligned_cols=129  Identities=16%  Similarity=0.230  Sum_probs=86.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH-----HHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-----EQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir-----~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~a  340 (435)
                      +.+|+|+|+|||||||+|+.|++.++   +..++.|.++     ..+. .|.    .+....  ....    + ..+...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg---~~~i~~d~~~~~~~~~~~~-~g~----~~~~~~--~~~~----~-~~l~~~   82 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG---YPFIEGDALHPPENIRKMS-EGI----PLTDDD--RWPW----L-AAIGER   82 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT---CCEEEGGGGCCHHHHHHHH-HTC----CCCHHH--HHHH----H-HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CEEEeCCcCcchhhHHHHh-cCC----CCCchh--hHHH----H-HHHHHH
Confidence            56899999999999999999999876   5677788653     1111 121    121110  1111    1 122233


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV  414 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~  414 (435)
                      +..|..||+|.++.....|.. +..... ....+|+|+++ +++++|+.+|.   ++..+.+.+.++.+.++.|.
T Consensus        83 ~~~~~~vivd~~~~~~~~~~~-l~~~~~-~~~~vi~l~~~~e~~~~Rl~~R~---~~~~~~~~~~~~~~~~~~~~  152 (202)
T 3t61_A           83 LASREPVVVSCSALKRSYRDK-LRESAP-GGLAFVFLHGSESVLAERMHHRT---GHFMPSSLLQTQLETLEDPR  152 (202)
T ss_dssp             HTSSSCCEEECCCCSHHHHHH-HHHTST-TCCEEEEEECCHHHHHHHHHHHH---SSCCCHHHHHHHHHHCCCCT
T ss_pred             HhcCCCEEEECCCCCHHHHHH-HHHhcC-CCeEEEEEeCCHHHHHHHHHHhh---ccCCCHHHHHHHHHhcCCCC
Confidence            478899999999998877765 322221 14678888887 89999999984   34456889999999888664

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.24  E-value=2.9e-11  Score=115.09  Aligned_cols=126  Identities=17%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCC-CccCCC-ChHHHHHHHHHHHHHHHHHHHHHh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG-LLRKHN-YSERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G-~~~~~~-~~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ..+.+|+|+|+|||||||+|+.+++.++. .+++++.|.++..+.... ...... ....+...  .+......++..++
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~-~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~~~~  106 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG-NIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKD--FAGKMVESLVTKLS  106 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTT-CCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHH--HHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCC-CcEEEecHHHHHhchhHHHHHHHcCchHHHHhhH--HHHHHHHHHHHHHH
Confidence            34689999999999999999999998752 367888888754321000 000111 11111110  01122234555556


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhh
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      +.|.++|||.++.....+..+++.+...+ .+.++++.++ +++.+|+..|..
T Consensus       107 ~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~  159 (253)
T 2p5t_B          107 SLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE  159 (253)
T ss_dssp             HTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             hcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence            78889999999888877777777777655 6777788776 899999998854

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.20  E-value=6.9e-11  Score=105.84  Aligned_cols=134  Identities=10%  Similarity=0.047  Sum_probs=77.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH----HHHHhccCCCccCCCCh--HHHHHHHHHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL----ILEQMKVPGLLRKHNYS--ERFQCLMGRANAIFDVLLS  338 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~----ir~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~ll~  338 (435)
                      .+.+|+++|+|||||||+|+.|++.++.. + ++..|.    +++.+. .|.   ..+.  ..|...   ..+.+..++ 
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~-~-i~d~~~~g~~i~~~~~-~g~---~~~~~~~~~~~~---~~~~i~~~l-   73 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGS-F-VFEPEEMGQALRKLTP-GFS---GDPQEHPMWIPL---MLDALQYAS-   73 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTC-E-ECCTHHHHHHHHHTST-TCC---SCGGGSTTHHHH---HHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCC-E-EEchhhhHHHHHHhCc-ccc---chhhhhHHHHHH---HHHHHHHHH-
Confidence            35789999999999999999999887631 2 234332    332221 221   1121  222211   111122222 


Q ss_pred             HHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCC
Q 013831          339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP  413 (435)
Q Consensus       339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P  413 (435)
                        ...|..||+|.|+..+..+...++.+...+ .+.+|++.++ +++++|+..|..   +....+.+..+.+.++.+
T Consensus        74 --~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~---r~~~~~~~~~~~~~~~~~  145 (183)
T 2vli_A           74 --REAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQ---PQVNVGTVEDRLNELRGE  145 (183)
T ss_dssp             --HHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-------CCHHHHHHHHHHHTSG
T ss_pred             --HhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccc---cchhHHHHHHHHHhhccc
Confidence              124889999999988877776666666543 4566888886 899999998842   225567777777776644

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.20  E-value=2.9e-10  Score=101.30  Aligned_cols=130  Identities=14%  Similarity=0.173  Sum_probs=84.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-----HhccCCCccCCCChH-HHHHHHHHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-----QMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLS  338 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-----~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~  338 (435)
                      ..++|+++|+|||||||+++.++..++   ++.++.|.++.     ++ ..|.    .+.. .......    .+..++.
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g---~~~i~~d~~~~~~~~~~~-~~g~----~~~~~~~~~~~~----~~~~~~~   74 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKM-ASGE----PLNDDDRKPWLQ----ALNDAAF   74 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT---CEEEEGGGGCCHHHHHHH-HTTC----CCCHHHHHHHHH----HHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhC---cEEEeCccccchHHHHHh-hcCc----CCCccccccHHH----HHHHHHH
Confidence            367999999999999999999998765   67788886531     11 1232    1111 1111111    1222333


Q ss_pred             HHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCC
Q 013831          339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP  413 (435)
Q Consensus       339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P  413 (435)
                      .++..+..+|+|.+++.+..|..    ++... .+.+|++++| +++.+|+..|.   ++..+...+..+.+.++.|
T Consensus        75 ~~~~~~~~~vi~~~~~~~~~~~~----l~~~~~~~~vv~l~~~~e~~~~R~~~R~---~~~~~~~~~~~~~~~~~~~  144 (175)
T 1knq_A           75 AMQRTNKVSLIVCSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARK---GHFFKTQMLVTQFETLQEP  144 (175)
T ss_dssp             HHHHHCSEEEEECCCCSHHHHHH----HHTTCTTEEEEEEECCHHHHHHHHHTST---TCCCCHHHHHHHHHHCCCC
T ss_pred             HHHhcCCcEEEEeCchHHHHHHH----HHhcCCCEEEEEEECCHHHHHHHHHhcc---CCCCchHHHHHHHHhhhCc
Confidence            44456889999999887665543    34433 5678899887 89999999983   3444577777777777655

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.17  E-value=9.6e-10  Score=98.95  Aligned_cols=120  Identities=19%  Similarity=0.160  Sum_probs=74.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHH------------HHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF------------QCLMGRANAIF  333 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~------------~~~~~~~~~~~  333 (435)
                      +.+|+++|+|||||||+|+.+++.++   +.+++.|.+.+.....+.   ..+....            +.........+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~   76 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERKNPD---SQYGELIEKYIKEGKIVPVEITISLLKREM   76 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHCTT---STTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHhccC---ChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            57899999999999999999999876   677888877544211110   0010000            00111111122


Q ss_pred             HHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhh
Q 013831          334 DVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       334 ~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      ...+ .++..+..||+|.+..+...+..+.+.+.... .-.+|++++| +++++|+.+|..
T Consensus        77 ~~~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  136 (196)
T 1tev_A           77 DQTM-AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  136 (196)
T ss_dssp             HHHH-HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             Hhhh-ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence            2222 23456889999999888877665544444322 2246788886 899999998854

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.15  E-value=2e-10  Score=101.28  Aligned_cols=132  Identities=11%  Similarity=0.185  Sum_probs=76.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh-ccCCCccCCCChHHHHHHHHH-HHHHHHHHHHHHh--c
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM-KVPGLLRKHNYSERFQCLMGR-ANAIFDVLLSRAS--R  342 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~-~~~G~~~~~~~~~~~~~~~~~-~~~~~~~ll~~al--~  342 (435)
                      .+|+++|+|||||||+|+.| +.++   +.+++.|++.++. ...+ ..........+...+. -...+..++..++  .
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g---~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   76 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERG---AKVIVMSDVVRKRYSIEA-KPGERLMDFAKRLREIYGDGVVARLCVEELGTS   76 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTT---CEEEEHHHHHHHHHHHHC----CCHHHHHHHHHHHHCTTHHHHHHHHHHCSC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCC---CcEEEHhHHHHHHHHhcC-CChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999 7766   5667766554432 2112 0000001111111111 0112333444445  6


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNM  406 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m  406 (435)
                      .+..||+|.. .....+.. ++.+.. ....+|++++| +++.+|+..|.........+++..++
T Consensus        77 ~~~~vi~dg~-~~~~~~~~-l~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~  138 (179)
T 3lw7_A           77 NHDLVVFDGV-RSLAEVEE-FKRLLG-DSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRD  138 (179)
T ss_dssp             CCSCEEEECC-CCHHHHHH-HHHHHC-SCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHH
T ss_pred             CCCeEEEeCC-CCHHHHHH-HHHHhC-CCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHH
Confidence            7889999997 77776664 333332 25678888886 89999999984322223345666655

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.12  E-value=4e-10  Score=103.06  Aligned_cols=132  Identities=17%  Similarity=0.178  Sum_probs=86.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-----HhccCCCccCCCChHHHHHHHHHHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-----QMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR  339 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-----~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~  339 (435)
                      ..++|+++|+|||||||+++.++..++   .+.++.|.+..     .+. .|.    .+...  ...... ..+...+..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g---~~~i~~d~~~~~~~~~~~~-~g~----~~~~~--~~~~~~-~~~~~~~~~   96 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETG---LEFAEADAFHSPENIATMQ-RGI----PLTDE--DRWPWL-RSLAEWMDA   96 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHC---CEEEEGGGGSCHHHHHHHH-TTC----CCCHH--HHHHHH-HHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhC---CeEEcccccccHHHHHHHh-cCC----CCCCc--ccccHH-HHHHHHHHH
Confidence            367999999999999999999998875   67777776521     111 121    12211  111111 122233434


Q ss_pred             HhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV  414 (435)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~  414 (435)
                      .+..+..+|+|.+...+..|..    +... ....+|++.++ +++.+|+.+|.   ++..+.+.+..+++.++.+.
T Consensus        97 ~~~~g~~viid~~~~~~~~~~~----l~~~~~~~~vv~l~~~~e~l~~Rl~~R~---~~~~~~~~l~~~~~~~~~~~  166 (200)
T 4eun_A           97 RADAGVSTIITCSALKRTYRDV----LREGPPSVDFLHLDGPAEVIKGRMSKRE---GHFMPASLLQSQLATLEALE  166 (200)
T ss_dssp             HHHTTCCEEEEECCCCHHHHHH----HTTSSSCCEEEEEECCHHHHHHHHTTCS---CCSSCGGGHHHHHHHCCCCC
T ss_pred             HHhcCCCEEEEchhhhHHHHHH----HHHhCCceEEEEEeCCHHHHHHHHHhcc---cCCCCHHHHHHHHHHhCCCC
Confidence            4567889999999888766553    3332 25677889887 89999998884   34456778888888887553

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.10  E-value=1.8e-09  Score=96.37  Aligned_cols=130  Identities=19%  Similarity=0.278  Sum_probs=91.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      ..+++.|+|++||||||+++.+...     ..+++.|.++..+.  .......+.   ....+.    +.......+..|
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~~-----~~~~~~d~~~g~~~--~~~~~~~~~---~~~~~~----~~~~~~~~~~~g   73 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFKP-----TEVISSDFCRGLMS--DDENDQTVT---GAAFDV----LHYIVSKRLQLG   73 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSCG-----GGEEEHHHHHHHHC--SSTTCGGGH---HHHHHH----HHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHccC-----CeEEccHHHHHHhc--CcccchhhH---HHHHHH----HHHHHHHHHhCC
Confidence            4689999999999999999997643     23577787765432  211111111   111111    112333445789


Q ss_pred             CeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYV  411 (435)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe  411 (435)
                      ..+++|+++.....|++++..++.+. +..+++++.| ..+-.|++.|.   .+.+|++++.++.+.+.
T Consensus        74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~---~~~~~~~vi~~~~~~l~  139 (171)
T 4gp7_A           74 KLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT---DRQVEEYVIRKHTQQMK  139 (171)
T ss_dssp             CCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS---SCCCCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc---CCCCCHHHHHHHHHHhh
Confidence            99999999999998888787777765 7888999988 78888999884   45899999999887654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.10  E-value=2.4e-09  Score=96.18  Aligned_cols=118  Identities=21%  Similarity=0.259  Sum_probs=72.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVL  336 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~l  336 (435)
                      .+.+|+++|+|||||||+|+.|++.++   +.+++.|.+.++....|..    .......+.        +.....+...
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~l~~~   77 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQSGSK----DGEMIATMIKNGEIVPSIVTVKLLKNA   77 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCT----THHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence            457999999999999999999999876   6788887765442111210    111100000        0111112222


Q ss_pred             HHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831          337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +..  ..+..||+|....+...+..+.+.+.... .-.+|++++| +++++|+..|.
T Consensus        78 i~~--~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~  132 (194)
T 1qf9_A           78 IDA--NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRG  132 (194)
T ss_dssp             HHT--STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             HHh--cCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhcc
Confidence            211  16789999998887776665444444322 2246788876 89999999885

>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}

Probab=99.02  E-value=5.1e-09  Score=95.50  Aligned_cols=147  Identities=8%  Similarity=-0.026  Sum_probs=100.0

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeecC--------CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH  113 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~  113 (435)
                      ..++|||....++|.||+|+.+++...        ++.|. .|..|.+.-++.+|++||||.+..             ..
T Consensus        13 ~~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~-~~~~VLg~~~fssGrHYWEVev~~-------------~~   78 (191)
T 2wl1_A           13 VNVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFD-SCIIVLGSPSFLSGRRYWEVEVGD-------------KT   78 (191)
T ss_dssp             CCCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCS-SSCCEEEECCBCSSEEEEEEECTT-------------CS
T ss_pred             eeeEECCccCCCceEECCCCcEEEECCcCCCCCCCccccc-ccccccCcccccCCCEEEEEEeCC-------------CC
Confidence            368999999999999999998876432        22332 477899999999999999999863             35


Q ss_pred             cEEEEEecCCCC---CCCCCCCCcceEEec-CCceE--eCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCcccee
Q 013831          114 VCRVGTSRGDDP---VGKLGETEQSFGFGG-TGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG  187 (435)
Q Consensus       114 ~~rvG~s~~~~~---~~~lG~d~~S~gy~~-~G~~~--~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg  187 (435)
                      .+.||++.....   ...+|.+..+|+..- ++..+  ........- .-.....||++||++.   ++|+|+. -...-
T Consensus        79 ~w~vGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~-~~~~~~rVGVfLDye~---G~lSFY~-v~~~~  153 (191)
T 2wl1_A           79 AWILGACKTSISRKGNMTLSPENGYWVVIMMKENEYQASSVPPTRLL-IKEPPKRVGIFVDYRV---GSISFYN-VTARS  153 (191)
T ss_dssp             CEEEEEEETTCCSSSCCCCCGGGTEEEEEEEETTEEEECCSSCEECC-CSSCCSEEEEEEETTT---TEEEEEE-TTTTE
T ss_pred             EEEEEEeeCCcCCCCccccCCCCCEEEEEEeCCCEEEEEcCCCccCc-cccCCcEEEEEEEcCC---CEEEEEE-CCCCc
Confidence            789999986532   335788888898753 24332  111111111 1234679999999998   8999985 22222


Q ss_pred             ecccccC-CCCCccccccccccccCCCceeeEEEEc
Q 013831          188 TAKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK  222 (435)
Q Consensus       188 ~af~~~~-~~~~l~~~~~~~~g~~~~~~lfP~v~l~  222 (435)
                      .-+++.. .               ..++|||.+++.
T Consensus       154 ~i~tF~~~~---------------Fs~pl~P~F~~~  174 (191)
T 2wl1_A          154 HIYTFASCS---------------FSGPLQPIFSPG  174 (191)
T ss_dssp             EEEEECCCC---------------CCSCEEEEEECC
T ss_pred             ceEEeCCCC---------------CCCCEEeEEEcc
Confidence            2233321 1               257999998764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.02  E-value=4.5e-09  Score=94.88  Aligned_cols=118  Identities=20%  Similarity=0.244  Sum_probs=72.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVL  336 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~l  336 (435)
                      .+.+|+++|+|||||||+|+.|++.++   +..++.|.+.+.....|..    .........        +.....+...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~~~~~   80 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRSEVSSGSA----RGKKLSEIMEKGQLVPLETVLDMLRDA   80 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence            357899999999999999999999876   5678888765442111110    000000000        0111233344


Q ss_pred             HHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +..++..|..||+|........+.. +..... ..-.+|+++++ +++.+|+..|.
T Consensus        81 i~~~~~~~~~vi~d~~~~~~~~~~~-~~~~~~-~~~~vi~l~~~~e~~~~R~~~R~  134 (196)
T 2c95_A           81 MVAKVNTSKGFLIDGYPREVQQGEE-FERRIG-QPTLLLYVDAGPETMTQRLLKRG  134 (196)
T ss_dssp             HHHHTTTCSCEEEESCCCSHHHHHH-HHHHTC-CCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHhccccCCcEEEeCCCCCHHHHHH-HHHhcC-CCCEEEEEECCHHHHHHHHHccC
Confidence            5555678899999987666554443 222111 23357788876 89999999884

>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22

Probab=99.01  E-value=7.2e-09  Score=95.17  Aligned_cols=148  Identities=11%  Similarity=0.002  Sum_probs=100.7

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeecC--------CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH  113 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~  113 (435)
                      ..++||+....++|.||+|+.+++...        ++.|. .|..|.++-++.+|++||||.|..             ..
T Consensus        10 ~~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~-~~~~VLg~~~fsSGrHYWEVev~~-------------~~   75 (201)
T 2fbe_A           10 VDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFD-TALCVLGTPRFTSGRHYWEVDVGT-------------SQ   75 (201)
T ss_dssp             CCCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCS-SSCEEEESCCBSSSEEEEEEECTT-------------CS
T ss_pred             EeEEECcccCCCceEECCCCcEEEECCccCCCCCCcccee-eccceecCccccCCceEEEEEeCC-------------CC
Confidence            358999999999999999999876432        22332 477899999999999999999963             35


Q ss_pred             cEEEEEecCCCC---CCCCCCCCcceEEec-CCceE--eCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCcccee
Q 013831          114 VCRVGTSRGDDP---VGKLGETEQSFGFGG-TGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG  187 (435)
Q Consensus       114 ~~rvG~s~~~~~---~~~lG~d~~S~gy~~-~G~~~--~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg  187 (435)
                      .+.||++.....   ...++.+..+|...- +|..+  ++......- .-.....||++||++.   ++|+|+..- ..-
T Consensus        76 ~w~vGV~~~si~Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l~-~~~~~~rVGVfLDye~---G~lSFY~v~-~~~  150 (201)
T 2fbe_A           76 VWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLW-VSPQLHRVGIFLDVGM---RSIAFYNVS-DGC  150 (201)
T ss_dssp             EEEEEEEETTSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEEC-CCTTCCEEEEEEETTT---TEEEEEETT-TTE
T ss_pred             EEEEEEeeCccCCCCcccccCCCCEEEEEEeCCCEEEEEcCCcccCc-cCCCCCEEEEEEEcCC---CEEEEEeCC-CCc
Confidence            689999986532   335677888998853 34432  222211111 1234579999999998   899998522 222


Q ss_pred             ecccccCCCCCccccccccccccCCCceeeEEEEc
Q 013831          188 TAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK  222 (435)
Q Consensus       188 ~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~  222 (435)
                      .-+++...              ...++|||.+++.
T Consensus       151 ~i~tF~~~--------------~Fs~pL~P~F~~~  171 (201)
T 2fbe_A          151 HIYTFIEI--------------PVCEPWRPFFAHK  171 (201)
T ss_dssp             EEEEECSC--------------CCSSCEEEEEEEE
T ss_pred             eeEEEcCC--------------CCCCCEEeEEEec
Confidence            22333210              0257999999874

>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*

Probab=99.01  E-value=7.4e-09  Score=94.12  Aligned_cols=145  Identities=10%  Similarity=0.030  Sum_probs=100.3

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeecC--------CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH  113 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~  113 (435)
                      ..++|||....++|.||+|+.+++...        ++.|. .|..|.+.-++.+|++||||.+..             ..
T Consensus         9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~-~~~~VLg~~~fsSGrHYWEVev~~-------------~~   74 (188)
T 2vok_A            9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFS-NYPMVLGAQRFSSGKMYWEVDVTQ-------------KE   74 (188)
T ss_dssp             CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCC-SSSEEEBSCCBSSSEEEEEEECTT-------------CS
T ss_pred             cceEECCccCCCCeEECCCCCEEEECCccCCCCCCcccee-eeccccccCcccCCCeEEEEEecC-------------Cc
Confidence            357899999999999999999876432        22332 477899999999999999999863             35


Q ss_pred             cEEEEEecCCCC---CCCCCCCCcceEEec-CCc-e-EeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCcc--c
Q 013831          114 VCRVGTSRGDDP---VGKLGETEQSFGFGG-TGK-F-SHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGK--W  185 (435)
Q Consensus       114 ~~rvG~s~~~~~---~~~lG~d~~S~gy~~-~G~-~-~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~--~  185 (435)
                      .+.||++.....   ...+|.+..+|+..- +|. . +|+.. ...- .-.....||++||++.   ++|+|+..-.  .
T Consensus        75 ~w~vGV~~~si~Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~-~~l~-~~~~~~rVGVfLDye~---G~lSFY~v~~~~~  149 (188)
T 2vok_A           75 AWDLGVCRDSVQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQ-TTLH-IQVPPCQIGIFVDYEA---GVVSFYNITDHGS  149 (188)
T ss_dssp             CEEEEEEETTCCCSSCCCCSTTTTEEEEEEETTEEEECSSSC-EEEC-CSSCCSEEEEEEETTT---TEEEEEETTTTTE
T ss_pred             eEEEEEeeCCcCCCCccccCCCCCEEEEEEECCEEEEEeCCc-cCEe-cCCCCCEEEEEEEcCC---CEEEEEECCCCCe
Confidence            689999986432   346789999999863 343 1 12221 1111 1124679999999998   8999985322  2


Q ss_pred             eeecccccC-CCCCccccccccccccCCCceeeEEEEc
Q 013831          186 LGTAKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK  222 (435)
Q Consensus       186 lg~af~~~~-~~~~l~~~~~~~~g~~~~~~lfP~v~l~  222 (435)
                      +.-.|.  . .               ..++|||.+++.
T Consensus       150 ~I~tF~--~~~---------------Fs~pL~P~F~~~  170 (188)
T 2vok_A          150 LIYTFS--ECV---------------FAGPLRPFFNVG  170 (188)
T ss_dssp             EEEEEC--SCC---------------CCSCEEEEEECC
T ss_pred             eeEEec--CCC---------------CCCCEEeEEEec
Confidence            332332  1 1               257999998764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.00  E-value=5.3e-10  Score=106.46  Aligned_cols=135  Identities=13%  Similarity=0.136  Sum_probs=84.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH--HHhcc-CCCcc------------C-C-----CChHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL--EQMKV-PGLLR------------K-H-----NYSERFQC  324 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir--~~~~~-~G~~~------------~-~-----~~~~~~~~  324 (435)
                      +++|+++|+|||||||+|+.|++.++   +.+++.|.+.  +.+.+ .+..+            . .     .++.  ..
T Consensus         1 M~li~I~G~~GSGKSTla~~La~~~~---~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~   75 (253)
T 2ze6_A            1 MLLHLIYGPTCSGKTDMAIQIAQETG---WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDA--ES   75 (253)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC---CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCH--HH
T ss_pred             CeEEEEECCCCcCHHHHHHHHHhcCC---CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccH--HH
Confidence            36899999999999999999999876   5677777753  11110 00000            0 0     1111  11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc----CC-cEEEEEECCh--HHHHHHHHHhhhh--cC
Q 013831          325 LMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN----FR-KIAVVVFPKP--EDLKIRSVKRFKE--MG  395 (435)
Q Consensus       325 ~~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~----~~-~~~vv~l~~~--ee~~~R~~~R~~~--~~  395 (435)
                      ..+.+    ...+ .++..|..+|++....  ...+.   .+..    .+ ...++++..|  +++.+|+.+|..+  ..
T Consensus        76 f~~~~----~~~i-~~~~~g~~vIl~gg~~--~~~~~---~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~  145 (253)
T 2ze6_A           76 AHRRL----IFEV-DWRKSEEGLILEGGSI--SLLNC---MAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAI  145 (253)
T ss_dssp             HHHHH----HHHH-HTTTTSSEEEEEECCH--HHHHH---HHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHH----HHHH-HHHhCCCCeEEeccHH--HHHHH---HHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhc
Confidence            22222    2234 4557889888886532  11111   1222    22 4577888764  8899999999765  35


Q ss_pred             CCCcHHHHHHHHhcccCCCC
Q 013831          396 KEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       396 ~~vp~~vi~~m~~~fe~P~~  415 (435)
                      ..++++++..+.+.|+.|..
T Consensus       146 ~~~~~~~l~e~~~~~~~p~~  165 (253)
T 2ze6_A          146 REDRPSLLEELAELWNYPAA  165 (253)
T ss_dssp             CSSSCCHHHHHHHHHTSTTH
T ss_pred             CcccchHHHHHHHhcCCcch
Confidence            56777889999999998865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.00  E-value=4.6e-09  Score=96.77  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=70.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh--
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS--  341 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al--  341 (435)
                      .|+|+|+|||||||+|+.|++.++   +.+++.|++.++....+..    ...........    .......++..++  
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~   74 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFRAAMKEETP----LGLEAKSYIDKGELVPDEVTIGIVKERLGK   74 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHHHHHHTTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence            378899999999999999999886   6788887765543111110    00000000000    0001112222232  


Q ss_pred             -cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHh
Q 013831          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R  390 (435)
                       ..+..+|+|....+...+..+.+.+...+ .. .++++.+| +++++|+..|
T Consensus        75 ~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           75 DDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             ccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence             23789999997777776665555555443 23 57788776 8999999998

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.00  E-value=5.2e-09  Score=94.20  Aligned_cols=116  Identities=19%  Similarity=0.156  Sum_probs=75.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ...+|+++|+|||||||+++.++..+.  +..+..++.|.++..+  .+.   ..+.. .....+...    ...+..++
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~--~~~---~~~~~~~r~~~~~~~----~~~~~~~~   82 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTV--SEG---AGFTREERLRHLKRI----AWIARLLA   82 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTT--TTT---CCCCHHHHHHHHHHH----HHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHH--hhc---cCCChhhHHHHHHHH----HHHHHHHH
Confidence            367899999999999999999987653  2225667778876543  221   12222 111111111    11222335


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~  389 (435)
                      ..|..||+|.++.+...|..+.+.+...+ ...+|+++++ +++.+|+..
T Consensus        83 ~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           83 RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            78899999999988887776555555443 5677899886 889888754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.99  E-value=5.1e-09  Score=108.42  Aligned_cols=123  Identities=19%  Similarity=0.077  Sum_probs=73.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCC-ccCCCC---hHHHHHHH-HHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGL-LRKHNY---SERFQCLM-GRANAIFDVLL  337 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~-~~~~~~---~~~~~~~~-~~~~~~~~~ll  337 (435)
                      .+.+|+|+|+|||||||++++|++.+.  ......++.|.++.++.  |. .....|   .....+.. ..+..++..+ 
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~--g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~-  114 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV--KTYKSFEFFLPDNEEGLKIRKQCALAALNDV-  114 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH--CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH-
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc--cCCCcccccCCCCHHHHHHHHHHHHHHHHHH-
Confidence            357899999999999999999987642  12256788888877642  21 000011   11111111 2222223222 


Q ss_pred             HHHh--cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECC--hHHHHHHHHHh
Q 013831          338 SRAS--RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPK--PEDLKIRSVKR  390 (435)
Q Consensus       338 ~~al--~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~--~ee~~~R~~~R  390 (435)
                      ...+  ..|..+|+|+||.+.+.|+.+++.++..+ .+.++.+.+  ++.+.+|...|
T Consensus       115 ~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~  172 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  172 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence            2223  57889999999999999998877776654 343444433  34555554444

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.98  E-value=1.1e-08  Score=93.30  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=70.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHHHH----HHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSR  339 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~  339 (435)
                      .+.+|+|+|+|||||||+|+.|++.++   +.+++.|.+.++ +. .+..    ...........    -......++..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r~~~~-~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~   90 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIE-EGTK----LGVEAKRYLDAGDLVPSDLTNELVDD   90 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHH-TTCH----HHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHHHHHH-cCCh----HHHHHHHHHHcCCcccHHHHHHHHHH
Confidence            356899999999999999999999876   557787776443 21 1110    00000000000    00001112221


Q ss_pred             H---hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          340 A---SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       340 a---l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      .   ...+..||+|.+.....++..+.+.+...+  .-.+|+|++| +++++|+..|.
T Consensus        91 ~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~  148 (201)
T 2cdn_A           91 RLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG  148 (201)
T ss_dssp             HTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred             HHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            1   134678999988777766664333344332  2357788876 89999999983

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.97  E-value=2.1e-08  Score=91.36  Aligned_cols=121  Identities=21%  Similarity=0.276  Sum_probs=71.8

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc-cCCCccCCCChHHHHHHH--------HHHHHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLM--------GRANAIF  333 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~-~~G~~~~~~~~~~~~~~~--------~~~~~~~  333 (435)
                      +..+.+|+++|+|||||||+|+.|++.++   +.+++.|.+.++.. ..|.    .+........        +.....+
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g---~~~i~~d~~~~~~~~~~~~----~~~~~i~~~~~~g~~~~~~~~~~~l   84 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQGRAGS----QYGELIKNCIKEGQIVPQEITLALL   84 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHHHSTTC----SCHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEeHHHHHHHHHhccCC----HHHHHHHHHHHcCCcCCHHHHHHHH
Confidence            34578999999999999999999999886   67888887655421 1121    0111000000        0111223


Q ss_pred             HHHHHHHhcCC-CeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhh
Q 013831          334 DVLLSRASRTP-RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       334 ~~ll~~al~~g-~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      ...+..++..| ..+|+|......+... .++.... ..-.+|++++| +++++|+..|..
T Consensus        85 ~~~i~~~l~~g~~~~i~dg~~~~~~~~~-~~~~~~~-~~~~~i~l~~~~e~~~~Rl~~R~~  143 (203)
T 1ukz_A           85 RNAISDNVKANKHKFLIDGFPRKMDQAI-SFERDIV-ESKFILFFDCPEDIMLERLLERGK  143 (203)
T ss_dssp             HHHHHHHHHTTCCEEEEETCCCSHHHHH-HHHHHTC-CCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccCCCeEEEeCCCCCHHHHH-HHHHhcC-CCCEEEEEECCHHHHHHHHHhccc
Confidence            33444445566 6899998655544433 2332211 12346788876 889999988853

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.96  E-value=1.7e-08  Score=90.34  Aligned_cols=117  Identities=23%  Similarity=0.292  Sum_probs=69.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS  341 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al  341 (435)
                      ..+|+++|+|||||||+++.+++.++   +.++++|.+.++..-.|..    ...........    .......++..++
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~~~~~l   76 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILRDHVARGTP----LGERVRPIMERGDLVPDDLILELIREEL   76 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHHHHHHTTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHHHHHHcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHHh
Confidence            56899999999999999999998876   6788887665432001110    00000000000    0011222344444


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ..+  +|+|.+......+..+...+...+  .-.+|++++| +++.+|+..|.
T Consensus        77 ~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~  127 (186)
T 3cm0_A           77 AER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA  127 (186)
T ss_dssp             CSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             cCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            544  999988777665553222344333  2356788876 89999999884

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.95  E-value=5.9e-09  Score=95.95  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-  342 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~-  342 (435)
                      .|+++|+|||||||+|+.|++.++   +.+++.|.+.++....+..    ...........    .......++..++. 
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~   74 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMFRAAIKNGTE----LGLKAKSFMDQGNLVPDEVTIGIVHERLSK   74 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHTTCH----HHHHHHHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence            478899999999999999998876   5678887765543111210    00100111100    00111223333332 


Q ss_pred             --CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHh
Q 013831          343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R  390 (435)
                        .+..+|+|....+...+..+.+.+...+ .. .+|++++| +++++|+..|
T Consensus        75 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           75 DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence              3789999997777776665444554443 23 57788876 8999999998

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.94  E-value=6.4e-09  Score=94.06  Aligned_cols=115  Identities=18%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-----c-----CCCChHHHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-----R-----KHNYSERFQCLMGRANAIFDV  335 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-----~-----~~~~~~~~~~~~~~~~~~~~~  335 (435)
                      +.+|+++|+|||||||+|+.|++.++   +.+++.|.+.++....+..     +     ......  +..    ...+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~--~~~----~~~~~~   82 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREELASESERSKLIRDIMERGDLVPS--GIV----LELLKE   82 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCH--HHH----HHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCH--HHH----HHHHHH
Confidence            46899999999999999999999876   6788888764332101110     0     000000  111    112233


Q ss_pred             HHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      .+...+..+..||+|....+...+..+.+.+ . ..-.+|+++++ +++.+|+..|.
T Consensus        83 ~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~-~-~~~~~i~l~~~~~~~~~R~~~R~  137 (199)
T 2bwj_A           83 AMVASLGDTRGFLIDGYPREVKQGEEFGRRI-G-DPQLVICMDCSADTMTNRLLQMS  137 (199)
T ss_dssp             HHHHHTTSCSCEEEETCCSSHHHHHHHHHHT-C-CCSEEEEEECCHHHHHHHHHHTC
T ss_pred             HHhcccccCccEEEeCCCCCHHHHHHHHHhc-C-CCCEEEEEECCHHHHHHHHHcCC
Confidence            4444456788999999888776655432221 1 12246788776 88999999883

>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}

Probab=98.91  E-value=1.6e-08  Score=91.77  Aligned_cols=141  Identities=17%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR  121 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~  121 (435)
                      ..|+|||.... +|.||+|+.+++..       .+..|.+.-++.+|++||||.|..             ...+.||++.
T Consensus        12 v~vTLDp~TA~-~l~lSed~r~Vr~~-------~~~~VLG~~~ftsGrHYWEVeV~~-------------~~~W~vGV~~   70 (186)
T 3uv9_A           12 VDVTLATNNIS-HAVIAEDKRQVSSR-------AGTGVLGSQSITSGKHYWEVDVSK-------------KSAWILGVCA   70 (186)
T ss_dssp             CCCCCCCCSSC-CCEECTTSSCEECC-------CSSCEECSSCBCSSEEEEEEECTT-------------CSCEEEEEES
T ss_pred             EEeEeCCCCcC-CceECCCCCEEeec-------CCCcCcCCCCCCCCCEEEEEEEcC-------------CCcEEEEEEE
Confidence            35889999877 59999999999752       346799999999999999999863             4678999987


Q ss_pred             CCCC--------CCCCCCCCcceEEe-cCCce---EeCCCcc-cCCC------CCCCCCEEEEEEecCCCCceeEEEEe-
Q 013831          122 GDDP--------VGKLGETEQSFGFG-GTGKF---SHGGNFL-NFGE------KFGVGDTIICAIDLESKPLATIGFAK-  181 (435)
Q Consensus       122 ~~~~--------~~~lG~d~~S~gy~-~~G~~---~~~~~~~-~yg~------~f~~gDvIGc~ld~~~~p~~~i~ft~-  181 (435)
                      ....        ...+|.+..+|+.. .+|..   +|++... ..++      .-.....||++||++.   ++|+|+- 
T Consensus        71 ~~~~r~~~~~~~~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~---G~lSFYnv  147 (186)
T 3uv9_A           71 GFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEA---CTVSFFNI  147 (186)
T ss_dssp             CSTTTTTTTHHHHTCCCGGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTT---TEEEEEET
T ss_pred             EEecccccccCCCcccCCCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCC---CEEEEEeC
Confidence            4321        23678888999985 45543   3444332 2222      1234679999999998   8999983 


Q ss_pred             -CccceeecccccCCCCCccccccccccccCCCceeeEEEEc
Q 013831          182 -NGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK  222 (435)
Q Consensus       182 -NG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~  222 (435)
                       |...+.-.|. ...               ..++|||..++.
T Consensus       148 ~d~~~lI~tF~-~~~---------------Fs~pL~P~F~~~  173 (186)
T 3uv9_A          148 TNHGFLIYKFS-QCS---------------FSKPVFPYLNPR  173 (186)
T ss_dssp             TTTTEEEEEEC-SCC---------------CSSCBEEEEECT
T ss_pred             CCCceEEEEeC-CcC---------------CCCCEEeEEECC
Confidence             2222333332 111               256899998875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.91  E-value=9.3e-09  Score=97.10  Aligned_cols=120  Identities=21%  Similarity=0.222  Sum_probs=73.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a  340 (435)
                      .+.+|+++|+|||||||+|+.|++.++   +.++++|++.++....+..    .......+...    ....+..++...
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~~  100 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLREAAEKKTE----LGLKIKNIINEGKLVDDQMVLSLVDEK  100 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTTSSSH----HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHHHHhccch----HHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            467899999999999999999998886   6788887765543212210    01111111100    001112233333


Q ss_pred             hcC---CCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 SRT---PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~~---g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +..   +..+|+|....+..+...+.+.+...+  .-.++++.+| +++++|+..|.
T Consensus       101 l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~  157 (243)
T 3tlx_A          101 LKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL  157 (243)
T ss_dssp             TTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence            333   788999996666655554444444443  2356778776 89999999884

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.90  E-value=1.3e-08  Score=94.78  Aligned_cols=116  Identities=15%  Similarity=0.086  Sum_probs=67.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhcC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASRT  343 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~~  343 (435)
                      +|+++|+|||||||+|+.|++.++   +.++++|++.++....+..    .......+...    -.+.+..++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg---~~~i~~dd~~r~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~   74 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS---LAHIESGGIFREHIGGGTE----LGKKAKEFIDRGDLVPDDITIPMVLETLES   74 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHTTTTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CeEEchHHHHHHHHHcCCH----HHHHHHHHHHcCCcCcHHHHHHHHHHHHhc
Confidence            589999999999999999999876   6778887775543111110    00000000000    001122233333444


Q ss_pred             --CCeEEEeCCCcCHHHHHHHHHHH-hcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          344 --PRNFIIDQTNVFKSARKRKLRLF-VNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       344 --g~~vIlD~Tn~~~~~R~~~~~~~-~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                        |..||+|.......+... +..+ ...+  .-.+|+++++ +++++|+..|.
T Consensus        75 ~~g~~vIlDg~~~~~~~~~~-l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           75 KGKDGWLLDGFPRNTVQAQK-LFEALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             HCTTCEEEESCCCSHHHHHH-HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             ccCCeEEEeCCcCCHHHHHH-HHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence              899999975555444443 3332 3322  3356788876 89999999884

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.86  E-value=1.9e-08  Score=93.57  Aligned_cols=119  Identities=21%  Similarity=0.266  Sum_probs=69.4

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHH--------HHHHHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFD  334 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~  334 (435)
                      .+++++|++.|+|||||+|.|+.|++.++   +.+||+.+++++....+..    .......+++        .....+.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~i~~~t~----lg~~~~~~~~~G~lVpde~~~~lv~   98 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAEVQSGSP----KGKELKAMMERGELVPLEVVLALLK   98 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHHHTTCCH----HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHHHHcCCc----hHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            35678999999999999999999999987   7899996654432112210    0011111111        1111222


Q ss_pred             HHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhhh
Q 013831          335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      ..+.........+|||.---+..+-.    .+.. .. .-.+++++++ +++.+|+..|..
T Consensus        99 ~~l~~~~~~~~g~ilDGfPRt~~Qa~----~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~  155 (217)
T 3umf_A           99 EAMIKLVDKNCHFLIDGYPRELDQGI----KFEKEVCPCLCVINFDVSEEVMRKRLLKRAE  155 (217)
T ss_dssp             HHHHHHTTTCSEEEEETBCSSHHHHH----HHHHHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred             HHHhhccccccCcccccCCCcHHHHH----HHHHhCCccCEEEeccCCHHHHHHHHhcccc
Confidence            23323334566799998433333222    2222 22 3467788887 889999988843

>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}

Probab=98.86  E-value=5.9e-08  Score=88.58  Aligned_cols=146  Identities=12%  Similarity=0.126  Sum_probs=96.7

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeecCC---------CCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCC
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGLHQ---------EGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQ  112 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~---------~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~  112 (435)
                      ..++|||....++|.||+|+.+++....         +.|. .|..|.+.-++.+|++||||.|..             .
T Consensus        12 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~-~~~~VLg~~~fssGrhYWEVev~~-------------~   77 (193)
T 3kb5_A           12 EELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFD-KAVAVVAHQQLSEGEHYWEVDVGD-------------K   77 (193)
T ss_dssp             CCCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCS-SSCEEEBSCCBCSSEEEEEEECTT-------------C
T ss_pred             ccEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccc-cccEEccCCcccCCCEEEEEEeCc-------------C
Confidence            4589999999999999999988765321         2222 367899999999999999999863             3


Q ss_pred             CcEEEEEecCCCC---CCCCCCCCcceEEe-cCCce--EeCCCccc--CCCCCCCCCEEEEEEecCCCCceeEEEEe--C
Q 013831          113 HVCRVGTSRGDDP---VGKLGETEQSFGFG-GTGKF--SHGGNFLN--FGEKFGVGDTIICAIDLESKPLATIGFAK--N  182 (435)
Q Consensus       113 ~~~rvG~s~~~~~---~~~lG~d~~S~gy~-~~G~~--~~~~~~~~--yg~~f~~gDvIGc~ld~~~~p~~~i~ft~--N  182 (435)
                      ..+.||++.....   ...++.+..+|+.. .+|..  .+......  ...+-..-..||++||++.   ++|+|+-  +
T Consensus        78 ~~W~lGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~---G~lSFY~v~~  154 (193)
T 3kb5_A           78 PRWALGVIAAEAPRRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGD---GVLSFYDASD  154 (193)
T ss_dssp             SSEEEEEEETTSCCSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTT---TEEEEEECCS
T ss_pred             ceEEEEEeeCCcCcCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCC---CEEEEEeCCC
Confidence            5789999986532   23455566789875 34432  22221111  1110123458999999998   8999874  2


Q ss_pred             c--cceeecccccCCCCCccccccccccccCCCceeeEEEE
Q 013831          183 G--KWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILL  221 (435)
Q Consensus       183 G--~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l  221 (435)
                      +  ..+--.|+  ..               ..++|||..++
T Consensus       155 ~~~~s~I~tF~--~~---------------Ft~pl~P~F~~  178 (193)
T 3kb5_A          155 ADALVPLFAFH--ER---------------LPRPVYPFFDV  178 (193)
T ss_dssp             TTCCEEEEEEC--SC---------------CCSCEEEEEEC
T ss_pred             CCCceEEEEeC--CC---------------CCCCeECEEEc
Confidence            1  23333342  22               25789999865

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.84  E-value=1.9e-08  Score=93.04  Aligned_cols=119  Identities=17%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVLL  337 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll  337 (435)
                      +.+|+++|+|||||||+|+.|++.++   +.++++|++.++..-.+..    .......+.        +.....+...+
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~l~~~l   76 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIAKGTQ----LGLEAKKIMDQGGLVSDDIMVNMIKDEL   76 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHHHHHHcCCh----HHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            56899999999999999999999886   6778887765432101110    000000000        00111112222


Q ss_pred             HHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhh
Q 013831          338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ......+..+|+|....+..++..+-..+...+ .. .+|+++++ +++++|+..|.
T Consensus        77 ~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~  133 (220)
T 1aky_A           77 TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL  133 (220)
T ss_dssp             HHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence            111124678999985445444443222333322 23 57788886 89999998874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.83  E-value=2.9e-08  Score=91.52  Aligned_cols=116  Identities=21%  Similarity=0.265  Sum_probs=73.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR  342 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~  342 (435)
                      +|++.|+|||||+|.|+.+++.++   +.+||+.++ |.++. .+.    .........+..    -......++..++.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~~i~-~~t----~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~   73 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQ-KGT----PLGKKAKEYMERGELVPDDLIIALIEEVFP   73 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH-HTC----HHHHHHHHHHHHTCCCCHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHH-hcC----hhhhhHHHHHhcCCcCCHHHHHHHHHHhhc
Confidence            578889999999999999999987   788998665 44332 111    001111111111    01123346666667


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHhh
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +...+|||.---+..+...+...+...+ . -.+++++++ +++++|+..|.
T Consensus        74 ~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~  125 (206)
T 3sr0_A           74 KHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR  125 (206)
T ss_dssp             SSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             cCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence            7778999996566555554333444433 3 367788887 89999999883

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.81  E-value=2e-08  Score=92.40  Aligned_cols=114  Identities=17%  Similarity=0.091  Sum_probs=71.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHHHHHhccCCCccCCCCh-HHHHHHHHHHHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~ir~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~ll~~a  340 (435)
                      ...+|+++|+|||||||+++.++..++   +..++.++.|.++..+.  +.   ..+. ..........    ...+..+
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~--~~---~~~~~~~r~~~~~~~----~~~~~~~   94 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN--KD---LGFSEADRNENIRRI----AEVAKLF   94 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTT--TT---CCSSHHHHHHHHHHH----HHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhc--cc---cCCCHHHHHHHHHHH----HHHHHHH
Confidence            357999999999999999999988654   11267888887764431  11   1122 2111122211    1234445


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHHHh------cCC-cEEEEEECCh-HHHHHHH
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRLFV------NFR-KIAVVVFPKP-EDLKIRS  387 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~------~~~-~~~vv~l~~~-ee~~~R~  387 (435)
                      ++.|..||+|.++.+...|..+.+...      ... ...+|+|+++ +++.+|+
T Consensus        95 l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A           95 ADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             HHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             HHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            678999999976655666664333333      112 4678899887 8888884

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.81  E-value=3e-08  Score=91.73  Aligned_cols=118  Identities=18%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH-
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA-  340 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a-  340 (435)
                      +..|+++|+|||||||+|+.|++.++   +.++++|++.++..-.+.    ........+...    -......++..+ 
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~t----~~g~~i~~~~~~g~~~~~~~~~~~i~~~l   77 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYG---LAHLSTGDMLREAIKNGT----KIGLEAKSIIESGNFVGDEIVLGLVKEKF   77 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTC------CCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC---ceEEehhHHHHHHHHcCC----HHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            45789999999999999999999886   678888876554210111    011111111100    001111222222 


Q ss_pred             --hcCCCeEEEeCCCcCHHHHHHHHH-HHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 --SRTPRNFIIDQTNVFKSARKRKLR-LFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 --l~~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                        ...+..+|+|....+..+... +. .+...+  .-.+|+++++ +++++|+..|.
T Consensus        78 ~~~~~~~~~i~dg~~~~~~~~~~-l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  133 (217)
T 3be4_A           78 DLGVCVNGFVLDGFPRTIPQAEG-LAKILSEIGDSLTSVIYFEIDDSEIIERISGRC  133 (217)
T ss_dssp             HTTTTTTCEEEESCCCSHHHHHH-HHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             hccccCCCEEEeCCCCCHHHHHH-HHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence              234788999975444443333 33 333322  3367888886 89999998874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.80  E-value=2.5e-08  Score=90.92  Aligned_cols=113  Identities=15%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ..++|+++|+|||||||+++.++..++  +...+.+..|.++..+.  .   ...+.. ........    +..+.....
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~--~---~~~~~~~~~~~~~~~----~~~~~~~~~   94 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLN--R---DLSFKAEDRAENIRR----VGEVAKLFA   94 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT--T---TCCSSHHHHHHHHHH----HHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhh--c---ccCcChHHHHHHHHH----HHHHHHHHH
Confidence            368999999999999999999988763  22123677787754332  1   112222 11111111    112333344


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~  387 (435)
                      ..+..+|++..+..+..|.. ++.......+.+||+.++ +++.+|.
T Consensus        95 ~~~~~vi~~~~~~~~~~r~~-~~~~~~~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A           95 DAGIICIASLISPYRTDRDA-CRSLLPEGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             HTTCEEEEECCCCCHHHHHH-HHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred             hCCceEEEecCCchHHHHHH-HHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence            68899999999998888876 333322225677899987 8999886

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.75  E-value=6.2e-08  Score=85.26  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~  346 (435)
                      .+|+++|+|||||||+|+.|++.++   +..++.|.+.....         ..   ....+        . ..++..+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~---------~~---~~~~~--------~-~~~l~~~~~   57 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK---YPIIKGSSFELAKS---------GN---EKLFE--------H-FNKLADEDN   57 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC---CCEEECCCHHHHTT---------CH---HHHHH--------H-HHHHTTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---CeeecCcccccchh---------HH---HHHHH--------H-HHHHHhCCC
Confidence            5899999999999999999999876   55677775543210         00   11111        1 123467888


Q ss_pred             EEEeCCC---------------cCHHHHHHHHHHHhc-C-CcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHh
Q 013831          347 FIIDQTN---------------VFKSARKRKLRLFVN-F-RKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLA  408 (435)
Q Consensus       347 vIlD~Tn---------------~~~~~R~~~~~~~~~-~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~  408 (435)
                      ||.|...               +....+.    .+.. + ....+|+++++ +++.+|+..|.   ......+.+.++.+
T Consensus        58 vi~dr~~~~~~v~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~---r~~~~~~~~~~~~~  130 (173)
T 3kb2_A           58 VIIDRFVYSNLVYAKKFKDYSILTERQLR----FIEDKIKAKAKVVYLHADPSVIKKRLRVRG---DEYIEGKDIDSILE  130 (173)
T ss_dssp             EEEESCHHHHHHHTTTBTTCCCCCHHHHH----HHHHHHTTTEEEEEEECCHHHHHHHHHHHS---CSCCCHHHHHHHHH
T ss_pred             eEEeeeecchHHHHHHHHHhhHhhHHHHH----HHhccCCCCCEEEEEeCCHHHHHHHHHhcC---CcchhhhHHHHHHH
Confidence            9999432               1222222    2222 1 23457888876 89999999983   22334456666655


Q ss_pred             ccc
Q 013831          409 NYV  411 (435)
Q Consensus       409 ~fe  411 (435)
                      .++
T Consensus       131 ~~~  133 (173)
T 3kb2_A          131 LYR  133 (173)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.74  E-value=4.2e-08  Score=104.36  Aligned_cols=115  Identities=14%  Similarity=0.075  Sum_probs=76.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al  341 (435)
                      ...+|+++|+|||||||+|+.|++.+.  +..++.++.|.++..+.  .   ...|... .+......    ..++..++
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~--~---~~~fs~~dree~~r~i----~eva~~~l  121 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN--K---NLGFSPEDREENVRRI----AEVAKLFA  121 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTT--T---TCCSSHHHHHHHHHHH----HHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccC--c---cccCChhhhHHHHHHH----HHHHHHHH
Confidence            467999999999999999999998762  22367777777654331  1   1123321 11222211    22344456


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHH
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSV  388 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~  388 (435)
                      +.|..||.|.++.+...|..+.+.+.... ...+|+|+++ +++.+|+.
T Consensus       122 ~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~  170 (630)
T 1x6v_B          122 DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV  170 (630)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred             hCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence            78999999987777777776555555544 5788999987 89999965

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=4.5e-08  Score=89.16  Aligned_cols=112  Identities=13%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      .+++|+++|+|||||||+++.+++.++   +..++.|.+....  .|..-...+....+....   .....++..+ ..+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~d~~~~~~--~g~~i~~~~~~~~~~~~~---~~e~~~l~~l-~~~   94 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDLDWYIEER--FHKTVGELFTERGEAGFR---ELERNMLHEV-AEF   94 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHH--HTSCHHHHHHHHHHHHHH---HHHHHHHHHH-TTC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcchHHHHHH--hCCcHHHHHHhcChHHHH---HHHHHHHHHH-hhc
Confidence            367899999999999999999999886   5677888875543  121000001111011111   1111233333 356


Q ss_pred             CeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831          345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (435)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~  388 (435)
                      .++||+........+. .++.+..  ...+|+++++ +++.+|+.
T Consensus        95 ~~~vi~~ggg~~~~~~-~~~~l~~--~~~vi~L~~~~e~l~~Rl~  136 (199)
T 3vaa_A           95 ENVVISTGGGAPCFYD-NMEFMNR--TGKTVFLNVHPDVLFRRLR  136 (199)
T ss_dssp             SSEEEECCTTGGGSTT-HHHHHHH--HSEEEEEECCHHHHHHHHH
T ss_pred             CCcEEECCCcEEccHH-HHHHHHc--CCEEEEEECCHHHHHHHHh
Confidence            7788885433222122 1223332  2457788886 89999998

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.71  E-value=1.2e-07  Score=100.28  Aligned_cols=115  Identities=13%  Similarity=0.150  Sum_probs=78.6

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCC---ccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSR  339 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~---~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~  339 (435)
                      +.+.+|+++|+|||||||+|+.|++.+..   ..++.++.|.++..+  .+.   ..|... ....+..    +..++..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l--~~~---~~f~~~er~~~i~r----i~~v~~~  464 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL--SSE---LGFTREDRHTNIQR----IAFVATE  464 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT--CTT---CCCSHHHHHHHHHH----HHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh--ccc---cCCChhHHHHHHHH----HHHHHHH
Confidence            34678999999999999999999987642   336788889887754  332   123221 1111111    1224444


Q ss_pred             HhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (435)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~  387 (435)
                      +++.|..||+|.++.++..|....+.+...+.+.+||++++ +++.+|.
T Consensus       465 ~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~  513 (573)
T 1m8p_A          465 LTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSD  513 (573)
T ss_dssp             HHHTTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHC
T ss_pred             HHhCCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHh
Confidence            56789999999988888888865555554345678899987 8998884

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.70  E-value=1.7e-07  Score=84.37  Aligned_cols=118  Identities=13%  Similarity=0.112  Sum_probs=69.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      .++++++|+|||||||+++.++....+  .+.++.|.+++... .|...............+    .+...+......+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g--~~~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~   74 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDN--SAYIEGDIINHMVV-GGYRPPWESDELLALTWK----NITDLTVNFLLAQN   74 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSS--EEEEEHHHHHTTCC-TTCCCGGGCHHHHHHHHH----HHHHHHHHHHHTTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCC--eEEEcccchhhhhc-cccccCccchhHHHHHHH----HHHHHHHHHHhcCC
Confidence            368999999999999999999886543  46788888754321 221111111111111222    22223333345778


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHh--cCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831          346 NFIIDQTNVFKSARKRKLRLFV--NFR-KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~--~~~-~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      .+|+|.. ..+..++.+.+.+.  ... ++.++++.++ +++.+|...|.
T Consensus        75 ~~ild~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~  123 (189)
T 2bdt_A           75 DVVLDYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (189)
T ss_dssp             EEEEESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             cEEEeec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence            9999986 45555444333332  223 5566777665 89999998884

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.69  E-value=1.2e-07  Score=85.00  Aligned_cols=133  Identities=15%  Similarity=0.179  Sum_probs=70.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccH---------HHHHHhccCCCccCCCChHHHHHHH--HHHHHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN---------LILEQMKVPGLLRKHNYSERFQCLM--GRANAIFDVL  336 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D---------~ir~~~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~l  336 (435)
                      +|+++|+|||||||+++.+++.++..++.++++|         .+++.+. .|.     +......+.  ......+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~~~~~l~~~   75 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILL-TEE-----LDERTELLLFEASRSKLIEEK   75 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HSC-----CCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHc-CCC-----CCHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999987621114445543         2222221 121     111111111  0111223344


Q ss_pred             HHHHhcCCCeEEEeCC------------CcCHHHHHHHHH-HHhc-CCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHH
Q 013831          337 LSRASRTPRNFIIDQT------------NVFKSARKRKLR-LFVN-FRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPAD  401 (435)
Q Consensus       337 l~~al~~g~~vIlD~T------------n~~~~~R~~~~~-~~~~-~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~  401 (435)
                      +..+++.|..||+|..            .+....-.. +. .+.. ...-.+|++++| +++++|+.+|.    ..-.++
T Consensus        76 i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~----~~~~~~  150 (195)
T 2pbr_A           76 IIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKN-LNEFATRGVKPDITLLLDIPVDIALRRLKEKN----RFENKE  150 (195)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT----CCCCHH
T ss_pred             HHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHH-HHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC----ccchHH
Confidence            5556688999999952            222211111 11 1121 123357788886 89999998652    222566


Q ss_pred             HHHHHHhccc
Q 013831          402 AVNNMLANYV  411 (435)
Q Consensus       402 vi~~m~~~fe  411 (435)
                      .+.++.+.++
T Consensus       151 ~~~~~~~~~~  160 (195)
T 2pbr_A          151 FLEKVRKGFL  160 (195)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666655444

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.68  E-value=9.4e-08  Score=85.53  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=33.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +.+|+++|+|||||||+|+.+++.++   +..++.|.++.++
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~d~~~~~~   43 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDSDKEIEKR   43 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence            56899999999999999999999876   6678889887664

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.68  E-value=1.4e-07  Score=88.08  Aligned_cols=120  Identities=20%  Similarity=0.229  Sum_probs=67.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a  340 (435)
                      .+..|+++|+|||||||+|+.|++.++   +.++++|++.++....+.    ........+...    .......++..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~i~~~   87 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMVASGS----ELGKKLKATMDAGKLVSDEMVLELIEKN   87 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHHcCC----hhHHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence            356899999999999999999999886   667888776544210110    000000000000    001111223332


Q ss_pred             hc---CCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 SR---TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +.   .+..+|+|....+..+...+.+.+...+  .-.+|+++.+ +++++|+..|.
T Consensus        88 l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  144 (233)
T 1ak2_A           88 LETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL  144 (233)
T ss_dssp             HTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred             HhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            22   3457999974444444443222333322  3467888886 89999998883

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.61  E-value=1.9e-07  Score=86.79  Aligned_cols=116  Identities=16%  Similarity=0.197  Sum_probs=64.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a  340 (435)
                      .+.+|+++|+|||||||+|+.|++.++   +..++.|++.+.....|..    .......+...    .......++...
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~~   78 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLRDNMLRGTE----IGVLAKAFIDQGKLIPDDVMTRLALHE   78 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHHHHHHHTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHHHhhhcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence            357899999999999999999999886   6778887664432101110    00000000000    000001111111


Q ss_pred             hc--CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          341 SR--TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~--~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +.  .+..+|+|....+..+.. .+..+  ...-.+|+++++ +++++|+..|
T Consensus        79 l~~~~~~~~vid~~~~~~~~~~-~l~~~--~~~~~vi~L~~~~~~~~~R~~~R  128 (227)
T 1zd8_A           79 LKNLTQYSWLLDGFPRTLPQAE-ALDRA--YQIDTVINLNVPFEVIKQRLTAR  128 (227)
T ss_dssp             HHTCTTSCEEEESCCCSHHHHH-HHHTT--SCCCEEEEEECCHHHHHHHHTCE
T ss_pred             HhcccCCCEEEeCCCCCHHHHH-HHHHh--cCCCEEEEEECCHHHHHHHHHcC
Confidence            22  467899999765544322 22222  122257788886 8899999877

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.59  E-value=3.8e-07  Score=80.40  Aligned_cols=109  Identities=18%  Similarity=0.211  Sum_probs=62.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      +.+|+++|+|||||||+|+.|++.++   +.+++.|.++.++  .|..-...+...-+.....   ....++.. +. +.
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~d~~~~~~--~g~~~~~~~~~~~~~~~~~---~~~~~~~~-l~-~~   71 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALG---YEFVDTDIFMQHT--SGMTVADVVAAEGWPGFRR---RESEALQA-VA-TP   71 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHH--HCSCHHHHHHHHHHHHHHH---HHHHHHHH-HC-CS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC---CcEEcccHHHHHH--hCCCHHHHHHHcCHHHHHH---HHHHHHHH-hh-cC
Confidence            35799999999999999999999876   6688889887654  2321000000000011111   11122222 33 44


Q ss_pred             eEEEeCC---CcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH--Hh
Q 013831          346 NFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV--KR  390 (435)
Q Consensus       346 ~vIlD~T---n~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~--~R  390 (435)
                      .+||+..   .+.+..+.. +   ..  .-.+|++.+| +++++|+.  .|
T Consensus        72 ~~vi~~g~~~~~~~~~~~~-l---~~--~~~~i~l~~~~e~~~~R~~~~~r  116 (173)
T 1e6c_A           72 NRVVATGGGMVLLEQNRQF-M---RA--HGTVVYLFAPAEELALRLQASLQ  116 (173)
T ss_dssp             SEEEECCTTGGGSHHHHHH-H---HH--HSEEEEEECCHHHHHHHHHHHHC
T ss_pred             CeEEECCCcEEeCHHHHHH-H---Hc--CCeEEEEECCHHHHHHHHhhccC
Confidence            6677643   234444432 2   22  1256788776 89999998  66

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.59  E-value=2.1e-07  Score=85.09  Aligned_cols=108  Identities=15%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCC--------------------ccEEEeccHHHHHHhccCCCccC---C---C
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--------------------KRYILLGTNLILEQMKVPGLLRK---H---N  317 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~--------------------~~~~~ls~D~ir~~~~~~G~~~~---~---~  317 (435)
                      ....+|+++|+|||||||+++.|++.++.                    ..+..++.|.+...+. .|..-.   +   .
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK-EGQFLEFDKYANNF   88 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH-TTCEEEEEEETTEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHH-cCCCEEeHHhCCCe
Confidence            45678999999999999999999988753                    1244455565543221 121100   0   0


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEEC-Ch-HHHHHHHHHh
Q 013831          318 YSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFP-KP-EDLKIRSVKR  390 (435)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~-~~-ee~~~R~~~R  390 (435)
                      |....            ..++.+++.|.+||+|.+.   ..... +  ...+.  ...+||+. ++ +++.+|+..|
T Consensus        89 ~~~~~------------~~i~~~l~~g~~vi~d~~~---~~~~~-l--~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R  147 (204)
T 2qor_A           89 YGTLK------------SEYDLAVGEGKICLFEMNI---NGVKQ-L--KESKHIQDGIYIFVKPPSIDILLGRLKNR  147 (204)
T ss_dssp             EEEEH------------HHHHHHHHTTCEEEEECCH---HHHHH-H--HHCSSCSCCEEEEEECSCHHHHHHHHHTC
T ss_pred             ecCCH------------HHHHHHHHcCCeEEEEECH---HHHHH-H--HHhcCCCCeEEEEEcCCCHHHHHHHHHHc
Confidence            11100            1233345789999999742   11111 1  12233  44667774 55 8999999888

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.59  E-value=2.9e-07  Score=83.72  Aligned_cols=123  Identities=14%  Similarity=0.038  Sum_probs=65.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc-cEEEe---ccHHHHHHhccCCCccCCCChHHHHHHH---HHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILL---GTNLILEQMKVPGLLRKHNYSERFQCLM---GRANAIFDVLLS  338 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~-~~~~l---s~D~ir~~~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~ll~  338 (435)
                      ..+|+++|+|||||||+|+.|++.++.. .++..   ..+.+++.+. .+.. ...+.+....+.   .+. ..+...+.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~r~-~~~~~~i~   80 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIK-EAKK-KDLLTPLTFSLIHATDFS-DRYERYIL   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHH-HHTT-TSCCCHHHHHHHHHHHHH-HHHHHTHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHh-cccc-ccCCCHHHHHHHHHHHHH-HHHHHHHH
Confidence            4689999999999999999999876532 13221   1133433221 1100 001111111111   111 12223344


Q ss_pred             HHhcCCCeEEEeCCCcCHHHHH-------HHHHHHhcC-C-cEEEEEECCh-HHHHHHHH-Hhh
Q 013831          339 RASRTPRNFIIDQTNVFKSARK-------RKLRLFVNF-R-KIAVVVFPKP-EDLKIRSV-KRF  391 (435)
Q Consensus       339 ~al~~g~~vIlD~Tn~~~~~R~-------~~~~~~~~~-~-~~~vv~l~~~-ee~~~R~~-~R~  391 (435)
                      .++..|..||+|....+.....       .++..+... . .-.+|+++++ +++.+|+. +|.
T Consensus        81 ~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~  144 (213)
T 2plr_A           81 PMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR  144 (213)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             HHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence            5567899999998544321111       223334332 2 2346788776 89999998 773

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.58  E-value=2.4e-07  Score=97.54  Aligned_cols=114  Identities=20%  Similarity=0.236  Sum_probs=76.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al  341 (435)
                      ...+|+++|+|||||||+|+.|++.+.  +..+..++.|.+++.+  .+.   ..|... ....++.    +...+..++
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l--~~~---~~f~~~er~~~l~~----i~~~~~~~l  441 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL--SRG---LGFSKEDRITNILR----VGFVASEIV  441 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT--CTT---CCSSHHHHHHHHHH----HHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh--ccc---ccccHHHHHHHHHH----HHHHHHHHH
Confidence            357899999999999999999988653  2336788889887764  232   123221 1111121    122344456


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~  388 (435)
                      +.|..||+|.++.++..|....+.+.. ..+.+|++.++ +++++|+.
T Consensus       442 ~~G~~VI~d~~~~~~~~r~~~~~~l~~-~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          442 KHNGVVICALVSPYRSARNQVRNMMEE-GKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHTTSCT-TCEEEEEEECCGGGHHHHCC
T ss_pred             hCCCEEEEEcCCCCHHHHHHHHHHhhc-CCEEEEEEeCCHHHHHHHhh
Confidence            789999999999988877754333332 35677888887 89998875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.55  E-value=6.5e-07  Score=83.71  Aligned_cols=142  Identities=14%  Similarity=0.077  Sum_probs=74.5

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc---------HHHHHHhccCCCccCCCChHHHHHHHHHHHH--
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---------NLILEQMKVPGLLRKHNYSERFQCLMGRANA--  331 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~---------D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~--  331 (435)
                      .....+|++.|+|||||||+++.+++.++. ...++.+         ..+++.+ ..+..    ..+.-..+.-.+..  
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~~i~~~~-~~~~~----~~~~~~~ll~~a~r~~   96 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIV-LEGND----MDIRTEAMLFAASRRE   96 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHHHHHHHT-TC-------CCHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHHHHHHHH-hCCCC----CCHHHHHHHHHHHHHH
Confidence            345689999999999999999999988763 2222222         1222221 12210    11111111111111  


Q ss_pred             HHHHHHHHHhcCCCeEEEe----------C--CCcCHHHHHHHHHHHhc-C-CcEEEEEECCh-HHHHHHHHHhhhhcCC
Q 013831          332 IFDVLLSRASRTPRNFIID----------Q--TNVFKSARKRKLRLFVN-F-RKIAVVVFPKP-EDLKIRSVKRFKEMGK  396 (435)
Q Consensus       332 ~~~~ll~~al~~g~~vIlD----------~--Tn~~~~~R~~~~~~~~~-~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~  396 (435)
                      .+.+.+..+++.|..||+|          .  .++....... +..+.. . ..-.++++++| +++++|+.+|.....+
T Consensus        97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~-l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr  175 (229)
T 4eaq_A           97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRA-LNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR  175 (229)
T ss_dssp             HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc
Confidence            1112234556789999999          3  2455555443 333432 2 24456788876 8999999998432122


Q ss_pred             C--CcHHHHHHHHhccc
Q 013831          397 E--VPADAVNNMLANYV  411 (435)
Q Consensus       397 ~--vp~~vi~~m~~~fe  411 (435)
                      .  -+.+..+++.+.|.
T Consensus       176 ~e~~~~~~~~rv~~~y~  192 (229)
T 4eaq_A          176 LDQEDLKFHEKVIEGYQ  192 (229)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHH
Confidence            1  13455555555553

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.51  E-value=1.8e-07  Score=86.02  Aligned_cols=113  Identities=18%  Similarity=0.172  Sum_probs=62.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhcC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASRT  343 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~~  343 (435)
                      .|+++|+|||||||+|+.|++.++   +.++++|++.++..-.|..    .......+...    ....+..++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g---~~~i~~d~~~r~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~   74 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVKSGSE----LGKQAKDIMDAGKLVTDELVIALVKERIAQ   74 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCT----TTGGGHHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHHcCCh----HHHHHHHHHHCCCcCCHHHHHHHHHHHHhc
Confidence            378999999999999999999876   5678887665442101110    00000000000    001122233333333


Q ss_pred             ---CCeEEEeCCCcCHHHHHHHHHHHhcC--CcEEEEEECCh-HHHHHHHHHhh
Q 013831          344 ---PRNFIIDQTNVFKSARKRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       344 ---g~~vIlD~Tn~~~~~R~~~~~~~~~~--~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                         +..+|+|..-.+..+..    .+...  ..-.+++++++ +++++|+..|.
T Consensus        75 ~~~~~~~i~dg~~~~~~~~~----~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           75 EDCRNGFLLDGFPRTIPQAD----AMKEAGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             GGGGGCEEEESCCCSHHHHH----HHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             cccCCCEEEeCCCCCHHHHH----HHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence               35799998533333222    23322  22356788876 89999998874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.49  E-value=1.2e-06  Score=77.93  Aligned_cols=115  Identities=15%  Similarity=0.089  Sum_probs=64.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ..+|+++|++||||||+++.++..+.  +..++.++.|.++..+.  .   ...+.. ..+....+...    .......
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~----~~~~~~~   75 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN--K---NLGFSPEDREENVRRIAE----VAKLFAD   75 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT--T---TCCSSHHHHHHHHHHHHH----HHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHh--h---ccccccccHHHHHHHHHH----HHHHHHH
Confidence            57899999999999999999988641  12256666666654321  1   111211 11111111111    1111224


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK  389 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~  389 (435)
                      .+..++.+.++.....|....+.....+ ...+|+++++ +++++|+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~  124 (179)
T 2pez_A           76 AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  124 (179)
T ss_dssp             TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             CCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhh
Confidence            6666666666555444554333333333 4567888886 888888654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.47  E-value=2.7e-07  Score=82.59  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=29.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~D~ir  304 (435)
                      +.+|+++|+|||||||+|+.|++.++..  .+..++.|++.
T Consensus         1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~   41 (194)
T 1nks_A            1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM   41 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence            3589999999999999999999876521  25667766543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.45  E-value=4.2e-07  Score=82.39  Aligned_cols=127  Identities=17%  Similarity=0.282  Sum_probs=68.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHHHH------------
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGRAN------------  330 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~~~------------  330 (435)
                      ++|+++|++||||||++++|.+.++..-...++...  +..+ .|..  .+|.|  ...++..++.-.            
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TT--R~pR-~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~Y   78 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTT--RTPR-AGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYY   78 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEEC--SCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEec--cCCC-CCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCcee
Confidence            468999999999999999999887642112232211  1111 1211  12222  122332221100            


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC-c-EEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831          331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-K-IAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNM  406 (435)
Q Consensus       331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~-~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m  406 (435)
                      ......++..+.+|++||+|-. +  .    -.+.++. +. . +.+++++++ +++.+|+..|    +..-.+++-.+|
T Consensus        79 Gt~~~~v~~~l~~g~~vil~id-~--~----g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~R----g~e~~e~i~~Rl  147 (186)
T 1ex7_A           79 GSTVASVKQVSKSGKTCILDID-M--Q----GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR----GTETEESINKRL  147 (186)
T ss_dssp             EEEHHHHHHHHHHTSEEEEECC-H--H----HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH----CCSCHHHHHHHH
T ss_pred             eeecceeeehhhCCCEEEecCC-H--H----HHHHHHHhcccCceEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHH
Confidence            0111244556688999999974 2  1    1223333 22 3 334444554 8999999999    555455555555


Q ss_pred             H
Q 013831          407 L  407 (435)
Q Consensus       407 ~  407 (435)
                      .
T Consensus       148 ~  148 (186)
T 1ex7_A          148 S  148 (186)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.45  E-value=2.2e-07  Score=81.64  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=59.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-cCC--CChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-~~~--~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      .|+++|+|||||||+|+.|++.++   +.+++.|.+...+  .|.. ++.  .+..  . .....   ...++. .+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~--~g~~~~~~~~~~~~--~-~~~~~---~~~~l~-~l~~~   69 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEVQKR--EGLSIPQIFEKKGE--A-YFRKL---EFEVLK-DLSEK   69 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHH--HTSCHHHHHHHSCH--H-HHHHH---HHHHHH-HHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHHHHH--cCCCHHHHHHHhCh--H-HHHHH---HHHHHH-HHhcc
Confidence            588999999999999999999876   5678888876553  1310 000  0011  1 11111   112222 23334


Q ss_pred             CeEEEeC---CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          345 RNFIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       345 ~~vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ..+||+.   ..+.+..+.    .+...  -.+|++++| +++++|+.+|
T Consensus        70 ~~~Vi~~g~~~~~~~~~~~----~l~~~--~~~i~l~~~~e~~~~R~~~r  113 (168)
T 2pt5_A           70 ENVVISTGGGLGANEEALN----FMKSR--GTTVFIDIPFEVFLERCKDS  113 (168)
T ss_dssp             SSEEEECCHHHHTCHHHHH----HHHTT--SEEEEEECCHHHHHHHCBCT
T ss_pred             CCeEEECCCCEeCCHHHHH----HHHcC--CEEEEEECCHHHHHHHHhCC
Confidence            4555552   223443333    23322  356788876 8999998876

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.44  E-value=4.8e-06  Score=74.52  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=75.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      ..++++++|+|||||||+++.++... ....+.++.|.++.... .+....+.......  ...+...+..........+
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~~~~~~-~~~~~~~~~~~~~~--~~~v~~~l~~~~~~~~~~~   83 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDLWGYIK-HGRIDPWLPQSHQQ--NRMIMQIAADVAGRYAKEG   83 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHHHHTCC-SSCCCTTSSSHHHH--HHHHHHHHHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccchhhhhh-cccccCCccchhhh--hHHHHHHHHHHHHHHhccC
Confidence            35899999999999999999999874 34467888888765321 11111111111111  1111112222222234567


Q ss_pred             CeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYV  411 (435)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe  411 (435)
                      ..+++|...- ...    +..+.... ...++++..+ +++++|...|...  -....+.+..+.+.+.
T Consensus        84 ~~~~~~~~~~-~~~----l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~--~lld~~~~~~~~~~~~  145 (191)
T 1zp6_A           84 YFVILDGVVR-PDW----LPAFTALARPLHYIVLRTTAAEAIERCLDRGGD--SLSDPLVVADLHSQFA  145 (191)
T ss_dssp             CEEEECSCCC-TTT----THHHHTTCSCEEEEEEECCHHHHHHHHHTTCTT--SCCCHHHHHHHHHHTT
T ss_pred             CeEEEeccCc-HHH----HHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCC--ccCCHHHHHHHHHHHh
Confidence            8899998532 111    22233212 4566777766 8899999888321  1124556666655553

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.44  E-value=6.8e-07  Score=82.56  Aligned_cols=39  Identities=28%  Similarity=0.273  Sum_probs=32.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      .+.+|+++|+|||||||+++.|++.++   +..++.|++.++
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~   42 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRA   42 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHH
Confidence            356899999999999999999999887   678888876543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.43  E-value=5.4e-07  Score=80.96  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=62.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh-CCCccEEEeccHHHHHHhccCCCccC---CCChHHHHHHHHHHHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD-HPEKRYILLGTNLILEQMKVPGLLRK---HNYSERFQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~-~~~~~~~~ls~D~ir~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~ll~~a  340 (435)
                      .+.+|+++|.|||||||+++.+++. ++   +..++.|.+.++..+.....+   ..+..+  ...+....    .++..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g---~~~id~d~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~----~l~~~   79 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELDG---FQHLEVGKLVKENHFYTEYDTELDTHIIEE--KDEDRLLD----FMEPI   79 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTT---EEEEEHHHHHHHTTCSCC------CCCCCH--HHHHHHHH----HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCC---CEEeeHHHHHHHhhhhhhHHHHhhhcccCC--CCHHHHHH----HHHHH
Confidence            3578999999999999999999998 55   788999987665322111100   001100  00011111    12222


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +..+..+|+|..+..      +   +.....-.+|+++++ +++.+|+.+|
T Consensus        80 ~~~~g~~vi~~~~~~------~---~~~~~~~~vi~l~~~~e~~~~Rl~~R  121 (184)
T 1y63_A           80 MVSRGNHVVDYHSSE------L---FPERWFHMVVVLHTSTEVLFERLTKR  121 (184)
T ss_dssp             HTSSSEEEEECSCCT------T---SCGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             HhccCCEEEeCchHh------h---hhhccCCEEEEEECCHHHHHHHHHhC
Confidence            323346778865431      1   111111257788887 8999999998

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.42  E-value=3.1e-07  Score=82.12  Aligned_cols=38  Identities=37%  Similarity=0.490  Sum_probs=32.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      .+|+|+|+|||||||+|+.|++.++   +.+++.|.+++++
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~D~~~~~~   40 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQR   40 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC---CCEEeCchHHHHH
Confidence            3589999999999999999999876   6678899987664

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.38  E-value=2.6e-07  Score=82.41  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=60.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChH--HHHHHHHHHHHHHHHHHHHHhc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE--RFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ...+|+++|+|||||||+++.+++.++   +..++.|.+..+...........+..  ..+.+.+.        +...+.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~   78 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSG---LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE--------LDNQMR   78 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHH--------HHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHH--------HHHHHh
Confidence            356789999999999999999999876   56778888766543211111111111  01112221        122233


Q ss_pred             CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .|. +|+|.-+..      .   +.....-.+|+++++ +++++|+..|
T Consensus        79 ~g~-~vv~~~~~~------~---~~~~~~~~vi~L~~~~e~l~~R~~~r  117 (180)
T 3iij_A           79 EGG-VIVDYHGCD------F---FPERWFHIVFVLRTDTNVLYERLETR  117 (180)
T ss_dssp             HCC-EEEECSCCT------T---SCGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             cCC-EEEEechhh------h---cchhcCCEEEEEECCHHHHHHHHHHc
Confidence            454 455654321      0   111012367788886 8999999988

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.38  E-value=3.2e-07  Score=82.01  Aligned_cols=41  Identities=17%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEeccHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLILEQ  306 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls~D~ir~~  306 (435)
                      ..+|+++|+|||||||+++.|++.++...  +..++.|++.++
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~   45 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE   45 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence            35899999999999999999998765222  456776665433

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.36  E-value=8.4e-07  Score=78.73  Aligned_cols=39  Identities=28%  Similarity=0.537  Sum_probs=32.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +..|+++|+|||||||+|+.+++.++   +..++.|.++++.
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~l~---~~~~d~d~~~~~~   42 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLIEQK   42 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcccHHHHHH
Confidence            34688999999999999999999887   6788899876653

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.35  E-value=1.9e-06  Score=78.58  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +.+|+++|+|||||||+++.|++.++
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999998643

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.29  E-value=7.6e-06  Score=75.64  Aligned_cols=140  Identities=18%  Similarity=0.098  Sum_probs=72.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc---------HHHHHHhccCCCccCCCChHHHHH-HH--HHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---------NLILEQMKVPGLLRKHNYSERFQC-LM--GRANAIF  333 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~---------D~ir~~~~~~G~~~~~~~~~~~~~-~~--~~~~~~~  333 (435)
                      ..+|++.|++||||||.++.+++.+....+.++.+         ..+++-+ ..+..  ....+.-+. +.  .++ +.+
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l-~~~~~--~~~~~~~~~llf~a~R~-~~~   81 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELL-LAPSD--EPMAADTELLLMFAARA-QHL   81 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHH-HSCCS--SCCCHHHHHHHHHHHHH-HHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHH-hcCCC--CCCCHHHHHHHHHHHHH-HHH
Confidence            57899999999999999999987764322211211         1233322 12210  011121111 11  111 123


Q ss_pred             HHHHHHHhcCCCeEEEeCC------------CcCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhhhhcCC-C
Q 013831          334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRFKEMGK-E  397 (435)
Q Consensus       334 ~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~-~~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~-~  397 (435)
                      ...+.-++.+|..||.|--            .+..+.-.+ +..+. .. ..-.+++|+++ +++++|..+|...... .
T Consensus        82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~-l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~  160 (213)
T 4edh_A           82 AGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAA-LESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQ  160 (213)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTT
T ss_pred             HHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccc
Confidence            4556677889999999952            122221111 12222 11 24467788886 8999999888321111 1


Q ss_pred             CcHHHHHHHHhcc
Q 013831          398 VPADAVNNMLANY  410 (435)
Q Consensus       398 vp~~vi~~m~~~f  410 (435)
                      -+.+.+++..+.|
T Consensus       161 ~~~~~~~rv~~~y  173 (213)
T 4edh_A          161 EDRRFFEAVRQTY  173 (213)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            1345555555444

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.28  E-value=6e-06  Score=77.13  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=62.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-  342 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~-  342 (435)
                      +-+.|+|||||||.|+.+++.+.   +.+||++++.++ +. .+..    .......+++.    -...+..++...+. 
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdllR~~~~-~~t~----lG~~i~~~~~~G~lvpdei~~~ll~~~l~~   82 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKFG---IPQISTGDMLRAAVK-AGTP----LGVEAKTYMDEGKLVPDSLIIGLVKERLKE   82 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHHHHHHH-TTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHHHHS
T ss_pred             eeeECCCCCCHHHHHHHHHHHhC---CCeeechHHHHHhcc-CCCh----HHHHHHHHHhhccccccHHHHHHHHHHHhC
Confidence            46789999999999999999886   678898765443 21 1210    00000000000    00011122222222 


Q ss_pred             --CCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                        ....+|||.---+..+ .   +.+....  .-.+|+|++| +++.+|+..|.
T Consensus        83 ~~~~~g~ILDGfPRt~~Q-a---~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~  132 (230)
T 3gmt_A           83 ADCANGYLFDGFPRTIAQ-A---DAMKEAGVAIDYVLEIDVPFSEIIERMSGRR  132 (230)
T ss_dssp             GGGTTCEEEESCCCSHHH-H---HHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred             cccCCCeEecCCCCcHHH-H---HHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence              2457999984334322 2   2233332  3467899987 89999999984

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.26  E-value=3.3e-06  Score=74.33  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=32.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      ..+|+++|+|||||||+++.++..++   +..++.|.+..++
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~d~~~~~~   42 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKR   42 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC---CCEEeccHHHHHH
Confidence            46799999999999999999999876   5778888876543

>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A

Probab=98.26  E-value=4.5e-06  Score=88.84  Aligned_cols=122  Identities=17%  Similarity=0.236  Sum_probs=81.3

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeecC----------------CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCC
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGLH----------------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME  105 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~----------------~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~  105 (435)
                      -.|+|||.... +|.||+|+.+|+...                ...|.. +.+|.+.-++.+|++||||.|..       
T Consensus       410 v~vtldp~ta~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~-~~~VLg~~~f~sGrhyWEV~v~~-------  480 (602)
T 4b3n_A          410 VDVTLATNNIS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNY-CTGVLGSQSITSGKHYWEVDVSK-------  480 (602)
T ss_dssp             CCCCEECCSCC-SCEECTTSSEEECCCC--------------------C-CCCEEESSCBSSSEEEEEEECTT-------
T ss_pred             EEEEeCCCCCC-ceeEecCCCEEEECCccccccCCCccCCCCCcccCCC-CCEeccCCCCCCEEEEEEEEECC-------
Confidence            45899999877 699999999987432                123333 56799999999999999999863       


Q ss_pred             CCCCCCCCcEEEEEecCCCC--------CCCCCCCCcceEEe-cCCceE---eCCCc-ccCCCC---CC---CCCEEEEE
Q 013831          106 DTPPDQQHVCRVGTSRGDDP--------VGKLGETEQSFGFG-GTGKFS---HGGNF-LNFGEK---FG---VGDTIICA  166 (435)
Q Consensus       106 ~~~~~~~~~~rvG~s~~~~~--------~~~lG~d~~S~gy~-~~G~~~---~~~~~-~~yg~~---f~---~gDvIGc~  166 (435)
                            ...+.||++.....        ...++.+..+|+.+ .+|..+   |+... ....+.   ..   .=..||++
T Consensus       481 ------~~~w~~Gv~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~  554 (602)
T 4b3n_A          481 ------KSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVF  554 (602)
T ss_dssp             ------CSCEEEEEECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEE
T ss_pred             ------CeeEEEEEeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEE
Confidence                  46789999863211        23456666789875 455432   33322 122211   11   22589999


Q ss_pred             EecCCCCceeEEEEe
Q 013831          167 IDLESKPLATIGFAK  181 (435)
Q Consensus       167 ld~~~~p~~~i~ft~  181 (435)
                      ||++.   +.|+|+.
T Consensus       555 ld~~~---g~~sFy~  566 (602)
T 4b3n_A          555 VDYEA---CTVSFFN  566 (602)
T ss_dssp             EETTT---TEEEEEE
T ss_pred             EecCC---CEEEEEe
Confidence            99998   8999984

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.25  E-value=1.2e-06  Score=79.87  Aligned_cols=139  Identities=14%  Similarity=0.047  Sum_probs=68.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEecc--------HHHHHHhccCCCccCCCChHH-HHHHHHHHH-HH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGT--------NLILEQMKVPGLLRKHNYSER-FQCLMGRAN-AI  332 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~--------D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~-~~  332 (435)
                      .+.+|+++|+|||||||+++.|++.++..  ....+..        +.+++.+. .+    ..+.+. ...+..... ..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~-~~----~~~~~~~~~~~~~~~~~~~   83 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK-ME----NSMSNETIHLLFSANRWEH   83 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHT-TS----SCCCHHHHHHHHHHHHHTT
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHh-cC----CCCCHHHHHHHHHHHHHHH
Confidence            35789999999999999999999865311  1211110        11222221 11    011111 111111000 11


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCcCH----HHH----HHHHHHHhc-C-CcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHH
Q 013831          333 FDVLLSRASRTPRNFIIDQTNVFK----SAR----KRKLRLFVN-F-RKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPAD  401 (435)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~----~~R----~~~~~~~~~-~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~  401 (435)
                      + ..+..++..+..||+|....+.    ..+    ..++..+.. . ..-.+|+|.+| +++++|+..|.   .+.-.++
T Consensus        84 ~-~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~---~r~~~~~  159 (212)
T 2wwf_A           84 M-NEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE---EIYEKVE  159 (212)
T ss_dssp             H-HHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS---STTCSHH
T ss_pred             H-HHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc---ccccHHH
Confidence            1 1334445678899999864321    111    122222222 1 13356788776 88888876541   1112355


Q ss_pred             HHHHHHhcccC
Q 013831          402 AVNNMLANYVL  412 (435)
Q Consensus       402 vi~~m~~~fe~  412 (435)
                      ...++.+.++.
T Consensus       160 ~~~~~~~~~~~  170 (212)
T 2wwf_A          160 TQKKIYETYKH  170 (212)
T ss_dssp             HHHHHHHHGGG
T ss_pred             HHHHHHHHHHH
Confidence            56666555543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.23  E-value=1.4e-06  Score=79.96  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=24.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..++|+++|++||||||+++.|+..++
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            367999999999999999999998875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.22  E-value=2e-06  Score=75.61  Aligned_cols=40  Identities=20%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      .+..|+++|.|||||||+|+.|++.++   +..+++|.+..++
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~~~~   45 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMIISER   45 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence            578999999999999999999999876   5678888876653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.21  E-value=6.1e-06  Score=76.60  Aligned_cols=138  Identities=12%  Similarity=0.212  Sum_probs=76.2

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCcc--CCCCh--HHHHHHHH------HH---
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLR--KHNYS--ERFQCLMG------RA---  329 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~--~~~~~--~~~~~~~~------~~---  329 (435)
                      +..++++++|++||||||+.+.++...+. .-...++.+.  +..+ .+...  .+.+.  ..+.....      .+   
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~tt--r~~~-~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~   90 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTT--RQPR-PGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF   90 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEEC--SCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecC--CCCC-cccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence            34689999999999999999999987752 1011111110  0000 01000  11111  11211111      00   


Q ss_pred             H---HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHH
Q 013831          330 N---AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNN  405 (435)
Q Consensus       330 ~---~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~  405 (435)
                      .   ..-...++.+++.|+.+|+|   +++..+..+++.+.  ..+.+++++.+ +++.+|+..|    +..-++++..+
T Consensus        91 ~~~yg~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~--~~~tI~i~th~~~~l~~Rl~~r----G~~~~e~i~~r  161 (219)
T 1s96_A           91 GNYYGTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP--HARSIFILPPSKIELDRRLRGR----GQDSEEVIAKR  161 (219)
T ss_dssp             TEEEEEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT--TCEEEEEECSSHHHHHHHHHTT----SCSCHHHHHHH
T ss_pred             hccCCCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc--CCEEEEEECCCHHHHHHHHHHc----CCCCHHHHHHH
Confidence            0   00012355667889999999   88888887666555  24666666554 8888888666    55555666666


Q ss_pred             HHh-cccCC
Q 013831          406 MLA-NYVLP  413 (435)
Q Consensus       406 m~~-~fe~P  413 (435)
                      +.. ..+++
T Consensus       162 l~~a~~e~~  170 (219)
T 1s96_A          162 MAQAVAEMS  170 (219)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            643 24443

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.20  E-value=1e-05  Score=72.97  Aligned_cols=37  Identities=22%  Similarity=0.159  Sum_probs=31.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~  305 (435)
                      .+.+|.++|.|||||||+++.|++. +   +.+++.|.+.+
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g---~~~id~d~~~~   43 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-G---YPVLDLDALAA   43 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-T---CCEEEHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-C---CEEEcccHHHH
Confidence            4678999999999999999999987 3   67888887643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.20  E-value=1.4e-05  Score=76.87  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=32.1

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      +.+.+|.++|.|||||||+|+.|++ ++   +.+|++|.+.++
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~-lg---~~~id~D~~~~~  111 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN-LG---AYIIDSDHLGHR  111 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH-HT---CEEEEHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CC---CcEEehhHHHHH
Confidence            4578999999999999999999994 44   678888887443

>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=5.5e-05  Score=67.22  Aligned_cols=143  Identities=15%  Similarity=0.214  Sum_probs=97.6

Q ss_pred             CCCCCeEEcCCCceEeecC-CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----
Q 013831           50 DCDLDFDIEDNGLKSSGLH-QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----  124 (435)
Q Consensus        50 d~~~~l~is~d~l~~~~~~-~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~----  124 (435)
                      -+..++.|++|+.++.... ..  ..+-+-|-++.++..|. .|+|+|.+...        .=.|.+++|+++.+-    
T Consensus        12 ~hG~nI~L~~~~~~A~R~~~~~--~f~~givFS~rPl~~~E-~~~v~I~~~~~--------~wsG~l~~GvT~~dP~~l~   80 (170)
T 2e63_A           12 RTGRLVSLSACGRTARRQQPGQ--EFNHGLVLSREPLRDGR-VFTVRIDRKVN--------SWSGSIEIGVTALDPSVLD   80 (170)
T ss_dssp             CCCSSEEECSSSCEEEESCTTT--CSCSCCEEEEEEECTTC-EEEEEEEEECC--------SSCCCCEEEEESSCTTSCC
T ss_pred             ccCCCeEECCCCeEEEeCCCCc--ccCceEEEECCCCCCCC-EEEEEEEeecC--------CcceeEEEEEEccChhhcc
Confidence            4788999999999887642 12  23446688889999775 46777775421        125899999998541    


Q ss_pred             -CCCCCCCCCcceEEecCCceEeCCC--cccCCC---CCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCC
Q 013831          125 -PVGKLGETEQSFGFGGTGKFSHGGN--FLNFGE---KFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNG  198 (435)
Q Consensus       125 -~~~~lG~d~~S~gy~~~G~~~~~~~--~~~yg~---~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~  198 (435)
                       +.....-...+|.+.+.+-. ++++  .+.||.   +...||+||..++-.    +.++|..||+.+|+++. ..    
T Consensus        81 lP~~~~~L~~~~Wv~~~~~v~-~ng~~~~e~~~~~l~~l~~Gd~ig~~~~~~----G~l~~~iNg~~~g~~~~-~i----  150 (170)
T 2e63_A           81 FPSSATGLKGGSWVVSGCSVL-RDGRSVLEEYGQDLDQLGEGDRVGVERTVA----GELRLWVNGRDCGVAAT-GL----  150 (170)
T ss_dssp             CCSSGGGCCSSEEEESSSEEE-ESSCEEEESCSSCGGGCCSSCCEEEEECTT----SCEEEEESSCEEEEEEC-CC----
T ss_pred             CCCChhhCCCCeEEEeccccc-cCCcccchhccccccccCCCCEEEEEEcCC----cEEEEEECCccceeeEc-CC----
Confidence             11122223467988653222 2222  357886   567999999999854    59999999999999975 11    


Q ss_pred             ccccccccccccCCCceeeEEEEcCeEE
Q 013831          199 LGVVDSAVKERQCESAVFPHILLKNVVV  226 (435)
Q Consensus       199 l~~~~~~~~g~~~~~~lfP~v~l~~~~v  226 (435)
                                   ..+||..|-+++...
T Consensus       151 -------------p~~LwavvDvyG~t~  165 (170)
T 2e63_A          151 -------------PPRVWAVVDLYGKCT  165 (170)
T ss_dssp             -------------CSCEEEEEECCTTEE
T ss_pred             -------------CCcEEEEEEccCCEE
Confidence                         357888888885443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.18  E-value=4.3e-06  Score=75.63  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=23.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+++.++..++
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            57899999999999999999998876

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.16  E-value=1.8e-05  Score=74.33  Aligned_cols=142  Identities=11%  Similarity=0.048  Sum_probs=69.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccE--EEecc--------HHHHHHhccCCCccCCCChHHHHHH-HH-HHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGT--------NLILEQMKVPGLLRKHNYSERFQCL-MG-RANAIF  333 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~--~~ls~--------D~ir~~~~~~G~~~~~~~~~~~~~~-~~-~~~~~~  333 (435)
                      ..+|++.|++||||||.++.+++.+....+  +.+..        ..+++.+. .+. ......+.-+.+ .- .-.+.+
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~-~~~-~~~~~~~~~e~lLf~A~R~~~~  104 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVK-EEH-PGEELQDITELLLVYAARVQLV  104 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH-SCC-TTSCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHh-hCC-CcccCCHHHHHHHHHHHHHHHH
Confidence            579999999999999999999876542211  12211        23333321 110 001122211211 11 111233


Q ss_pred             HHHHHHHhcCCCeEEEeCC------------CcCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhhhhcC-CC
Q 013831          334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRFKEMG-KE  397 (435)
Q Consensus       334 ~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~-~~-~~~~vv~l~~~-ee~~~R~~~R~~~~~-~~  397 (435)
                      ...+.-++++|..||.|--            .+..+.-.+ +..+. .. ..-.+++|++| +++++|+.+|..... ..
T Consensus       105 ~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~-l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~  183 (236)
T 3lv8_A          105 ENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQS-LKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEK  183 (236)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTTT
T ss_pred             HHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh
Confidence            4456677899999999942            122221111 22222 11 23456788876 899999988842111 11


Q ss_pred             CcHHHHHHHHhcc
Q 013831          398 VPADAVNNMLANY  410 (435)
Q Consensus       398 vp~~vi~~m~~~f  410 (435)
                      -+.+.+++..+.|
T Consensus       184 ~~~~~~~rv~~~y  196 (236)
T 3lv8_A          184 MDISFFERARERY  196 (236)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            1345555555544

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.11  E-value=1.7e-05  Score=83.53  Aligned_cols=115  Identities=15%  Similarity=0.185  Sum_probs=62.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC-c--cEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-K--RYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~-~--~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~a  340 (435)
                      ..++|+++|++||||||+++.++..+.. .  .+..+..|.++..+.  +.   ..|... ..........    ++...
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~--~~---l~f~~~~r~~~~r~i~~----v~q~l  438 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLS--SE---LGFSKAHRDVNVRRIGF----VASEI  438 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTT--SS---CCCSHHHHHHHHHHHHH----HHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhc--cc---cCCCHHHHHHHHHHHHH----HHHHH
Confidence            4689999999999999999999987631 1  244688888876542  11   123221 1111111111    22222


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~  388 (435)
                      ...+..+|..........|....+.+...+.+.+|+++++ +++.+|..
T Consensus       439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             HHTTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------
T ss_pred             HhcCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc
Confidence            3456666665544345666655555655556778899998 89988864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.09  E-value=1.7e-05  Score=71.45  Aligned_cols=24  Identities=21%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +|+++|+|||||||+++.|++.++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999876

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.09  E-value=1.6e-05  Score=78.40  Aligned_cols=35  Identities=11%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ..+|+++|++||||||+|..|++.++   ..+||.|.+
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs~Ds~   74 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFP---LEVINSDKM   74 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSC---EEEEECCSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCC---CcEEccccc
Confidence            46999999999999999999999997   678888864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.06  E-value=2.3e-05  Score=71.10  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      .+|.++|+|||||||+++.++. ++   +..+++|.+.++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg---~~~id~d~~~~~   38 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LG---VPLVDADVVARE   38 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TT---CCEEEHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CC---CcccchHHHHHH
Confidence            5789999999999999999987 54   567888887554

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.06  E-value=1.5e-05  Score=75.07  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=31.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCc-------cEEEeccHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK-------RYILLGTNLIL  304 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~-------~~~~ls~D~ir  304 (435)
                      .+.+|.++|.|||||||+|+.|++.++..       .+.+++.|.+.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~   67 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   67 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence            46789999999999999999999876521       24578888764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.05  E-value=5.1e-05  Score=69.49  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=31.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      +.+|.++|.+||||||+++.+++ ++   +.++++|.+.++
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg---~~~id~D~~~~~   40 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LG---INVIDADIIARQ   40 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cC---CEEEEccHHHHH
Confidence            46899999999999999999987 54   677888877554

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.03  E-value=1.6e-05  Score=71.93  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      .+|.++|.|||||||+++.++. ++   +.+++.|.+.++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g---~~~i~~d~~~~~   37 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LG---AYVLDADKLIHS   37 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TT---CEEEEHHHHHHG
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CC---CEEEEccHHHHH
Confidence            4789999999999999999998 65   678888887554

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.03  E-value=8.4e-05  Score=68.57  Aligned_cols=126  Identities=14%  Similarity=0.089  Sum_probs=65.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccE--EEecc--------HHHHHHhccCCCccCCCChHHHHHHHHHHH--HHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIF  333 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~--~~ls~--------D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~  333 (435)
                      ..+|++.|++||||||.++.+.+.+....+  +++..        ..|++-+.-..........+.-+.+.-.|.  +.+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~   82 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV   82 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence            468999999999999999999876542222  12211        123333210000000112222121111111  233


Q ss_pred             HHHHHHHhcCCCeEEEeCCCcCHH-HH-------HHHHHHHhc----C-CcEEEEEECCh-HHHHHHHHHhh
Q 013831          334 DVLLSRASRTPRNFIIDQTNVFKS-AR-------KRKLRLFVN----F-RKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       334 ~~ll~~al~~g~~vIlD~Tn~~~~-~R-------~~~~~~~~~----~-~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ...+.-++++|..||.|--..+.- ++       ..++..+..    . ..-.+++++.+ +++++|..+|.
T Consensus        83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~  154 (213)
T 4tmk_A           83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG  154 (213)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            445667789999999995111100 00       112322221    1 23456788876 89999999983

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.97  E-value=6.5e-06  Score=78.09  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=27.6

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      ..+.+|++.|++||||||+++.|++.+.+  +.++.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~--~~~i~   55 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCED--WEVVP   55 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTT--EEEEC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCC--CEEEe
Confidence            34689999999999999999999999854  44453

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.96  E-value=1.1e-05  Score=75.43  Aligned_cols=120  Identities=15%  Similarity=0.144  Sum_probs=61.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCc------cEEEec----c---HHHHHHhccCCCccCCCChHHHHHHHHHHH-
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK------RYILLG----T---NLILEQMKVPGLLRKHNYSERFQCLMGRAN-  330 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~------~~~~ls----~---D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~-  330 (435)
                      ...+|++.|++||||||.++.+++.+...      .++.+.    +   ..+++.+ ..+.     ..+.-+.+.-.+. 
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l-~~~~-----~~~~~~~llf~a~R   97 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREIL-LNQP-----MDLETEALLMFAGR   97 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHH-HHSC-----CCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHH-HcCC-----CCHHHHHHHHHHHH
Confidence            45799999999999999999998876421      122221    0   1233322 1221     1111111111111 


Q ss_pred             -HHHHHHHHHHhcCCCeEEEeCC------------CcCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhh
Q 013831          331 -AIFDVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       331 -~~~~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~-~~-~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                       +.+...+.-++.+|..||+|--            .+..+.-.. +..+. +. ..-.+|+|+.+ +++++|..+|.
T Consensus        98 ~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~-l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~  173 (227)
T 3v9p_A           98 REHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEA-LERWVQGGFQPDLTVLFDVPPQIASARRGAVR  173 (227)
T ss_dssp             HHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence             1234456677889999999942            122221111 11122 11 24456788876 88999998873

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.94  E-value=2.9e-06  Score=77.30  Aligned_cols=123  Identities=15%  Similarity=0.059  Sum_probs=63.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccE--EEec---------cHHHHHHhccCCCccCCCChHHHHHHHHHHHH-HHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLG---------TNLILEQMKVPGLLRKHNYSERFQCLMGRANA-IFDV  335 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~--~~ls---------~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~  335 (435)
                      +|+++|+|||||||+++.|++.++...+  ..+.         .|.++..+  .|........+.-..+...+.. ....
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEAL--HGEHGDLASSVYAMATLFALDRAGAVH   79 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHE--EEEEEEEEEEHHHHHHHHHHHHHEEHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHH--cccccccCCCHhHHHHHHHHHHhhhHH
Confidence            7899999999999999999987652212  1111         23343322  1110000001111111111111 0022


Q ss_pred             HHHHHhcCCCeEEEeCCCcCHHH-H------------HHHHHHHh----cC-CcEEEEEECCh-HHHHHHHHHhhh
Q 013831          336 LLSRASRTPRNFIIDQTNVFKSA-R------------KRKLRLFV----NF-RKIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~-R------------~~~~~~~~----~~-~~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      .+..++..|..||+|....+.-. +            ..++..+.    .. ..-.+++++++ +++++|+..|..
T Consensus        80 ~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~  155 (214)
T 1gtv_A           80 TIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ  155 (214)
T ss_dssp             HHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence            34555678899999986543211 1            11233322    11 13346778776 899999999853

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.92  E-value=9.7e-05  Score=66.53  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +.+|+++|+|||||||+++.|++.++
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l~   29 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESIP   29 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHC
Confidence            46899999999999999999999874

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.91  E-value=0.00025  Score=64.86  Aligned_cols=120  Identities=16%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc-cEEEec----c---HHHHHHhccCCCccCCCChHHHHHHHHHHH--HHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLG----T---NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFDV  335 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~-~~~~ls----~---D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~  335 (435)
                      .++|.+-|+.||||||.++.|.+.+... .++...    +   +.+++.+ ..+.    ...+.-+.+.-.+.  +.+..
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l-~~~~----~~~~~~~~lLf~a~R~~~~~~   76 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIV-LEGN----DMDIRTEAMLFAASRREHLVL   76 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHH-HSSC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHH-hccc----CCCHHHHHHHHHHHHHHHHHH
Confidence            3688999999999999999998776421 122211    1   2333332 1221    11222111111111  12344


Q ss_pred             HHHHHhcCCCeEEEeCCC------------cCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhh
Q 013831          336 LLSRASRTPRNFIIDQTN------------VFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       336 ll~~al~~g~~vIlD~Tn------------~~~~~R~~~~~~~~-~~-~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      .+.-++.+|..||.|--.            +..+.-.. +..+. .. .+=.+++++.| +++++|..+|.
T Consensus        77 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~-l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~  146 (205)
T 4hlc_A           77 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRA-LNEFAINGLYPDLTIYLNVSAEVGRERIIKNS  146 (205)
T ss_dssp             THHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHHC--
T ss_pred             HHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHH-HHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcC
Confidence            566778999999999521            11111111 11111 11 22245688775 89999998874

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.90  E-value=0.00013  Score=67.18  Aligned_cols=39  Identities=28%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      .+-.|-++|.+||||||+++.+.+ ++   +.++++|.+.+++
T Consensus         8 ~~~~iglTGgigsGKStv~~~l~~-~g---~~vidaD~ia~~l   46 (210)
T 4i1u_A            8 HMYAIGLTGGIGSGKTTVADLFAA-RG---ASLVDTDLIAHRI   46 (210)
T ss_dssp             SCCEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHH-CC---CcEEECcHHHHHH
Confidence            466789999999999999999987 65   7889999876543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.89  E-value=3.7e-05  Score=69.75  Aligned_cols=39  Identities=18%  Similarity=0.127  Sum_probs=32.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      .-.+|.++|.+||||||+++.+++.++   +.+++.|.+.++
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~   49 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHE   49 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHH
Confidence            457899999999999999999998865   678899987443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.89  E-value=3.8e-05  Score=72.68  Aligned_cols=39  Identities=28%  Similarity=0.436  Sum_probs=33.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      .+.|+++|+|||||||+++.++..++   +..+++|.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg---~~~~d~d~~~~~~   86 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG---YTFFDCDTLIEQA   86 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC---CcEEeCcHHHHHH
Confidence            46789999999999999999999876   6778888876653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.88  E-value=1.4e-05  Score=72.30  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .++|+++|+|||||||+++.++..+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            5789999999999999999999877

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.75  E-value=0.0004  Score=63.05  Aligned_cols=118  Identities=13%  Similarity=0.069  Sum_probs=57.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCc--cEEEec----c---HHHHHHhccCCCccCCCChHHHHH-HHHHHHHHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEK--RYILLG----T---NLILEQMKVPGLLRKHNYSERFQC-LMGRANAIFDVLL  337 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls----~---D~ir~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~ll  337 (435)
                      +|++-|+.||||||.++.|++.+...  .++...    +   ..+++.+. ..     ...+.... +.......+...+
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~-~~-----~~~~~~~~ll~~a~r~~~~~~I   75 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL-EE-----EVTPKAELFLFLASRNLLVTEI   75 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HS-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhh-cc-----cCChHHHHHHHHHHHHHHHHHH
Confidence            57788999999999999988765321  122221    1   12232221 11     11121111 1111122233456


Q ss_pred             HHHhcCCCeEEEeCCCcCHHHH--------HHHHHHH---hc--CCcEEEEEECCh-HHHHHHHHHhh
Q 013831          338 SRASRTPRNFIIDQTNVFKSAR--------KRKLRLF---VN--FRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       338 ~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~---~~--~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      .-++..|..||.|--..+.-..        ..++..+   ..  ..+-.+++++.| +++++|...|.
T Consensus        76 ~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d  143 (197)
T 3hjn_A           76 KQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN  143 (197)
T ss_dssp             HHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C
T ss_pred             HHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC
Confidence            6778999999999632211111        0112222   21  123345677765 88888866653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.74  E-value=9.5e-05  Score=69.19  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=29.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      +++|+++|+|||||||+++.+++.++   ...++.+.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg---~~~~~~G~i~   62 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFG---LQHLSSGHFL   62 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC---CCCEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHH
Confidence            57999999999999999999998775   3445555553

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.73  E-value=0.0002  Score=65.31  Aligned_cols=112  Identities=11%  Similarity=0.078  Sum_probs=59.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh-ccCCCccCC--CChHHHH-HH-------------HHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM-KVPGLLRKH--NYSERFQ-CL-------------MGRA  329 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~-~~~G~~~~~--~~~~~~~-~~-------------~~~~  329 (435)
                      .+|.+.|++||||||+++.+++.++   +..++ +++.+.. ...|...+.  .+.+... ..             ....
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg---~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   82 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYN---IPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDI   82 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTT---CCEEC-HHHHHHTTCC---------------------------------CHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhC---cCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence            5899999999999999999999987   56677 4443332 112221000  0011000 00             0001


Q ss_pred             HHHHHHHHHHHhc-CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831          330 NAIFDVLLSRASR-TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       330 ~~~~~~ll~~al~-~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ...+.+++...+. ...++|++.+-..      +  .+........||+.++ +++.+|..+|
T Consensus        83 ~~~~~~~i~~la~~~~~~~Vi~Gr~g~------~--vl~~~~~~~~V~L~A~~e~r~~R~~~~  137 (201)
T 3fdi_A           83 AIRQFNFIRKKANEEKESFVIVGRCAE------E--ILSDNPNMISAFILGDKDTKTKRVMER  137 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEESTTHH------H--HTTTCTTEEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEECCcc------h--hcCCCCCeEEEEEECCHHHHHHHHHHH
Confidence            1223334444441 3457888876321      1  1333223556788776 8999998876

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.72  E-value=9.2e-05  Score=69.27  Aligned_cols=38  Identities=16%  Similarity=0.160  Sum_probs=32.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      +.+|.+.|+|||||||+++.+++.++   +..++.|.+.+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg---~~~~d~g~~~r~   46 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG---ARYLDTGAMYRI   46 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCCcHHHH
Confidence            56899999999999999999999886   678888887654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.71  E-value=3.1e-05  Score=69.05  Aligned_cols=26  Identities=15%  Similarity=0.463  Sum_probs=23.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .++++++|++||||||+++.+...++
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            47899999999999999999998765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.70  E-value=0.00042  Score=65.24  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=32.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      ..+|.++|++||||||+++.+++.++   +..++++.+.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg---~~~~d~g~i~r~   64 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN---WRLLDSGAIYRV   64 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC---CCcCCCCceehH
Confidence            57899999999999999999999887   667788877643

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.70  E-value=0.00023  Score=66.10  Aligned_cols=38  Identities=8%  Similarity=0.051  Sum_probs=31.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      ..+|.+.|.+||||||+|+.+++.++   +..++.|.++..
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg---~~~~d~~~~~~~   51 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG---IHFYDDDILKLA   51 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT---CEEECHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC---CcEEcHHHHHHH
Confidence            46899999999999999999999887   667887766543

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.62  E-value=0.0002  Score=66.58  Aligned_cols=118  Identities=11%  Similarity=0.043  Sum_probs=55.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC-c--cEEE-e-cc------HHHHHHhccCCCccCCCChHHHHH---HHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-K--RYIL-L-GT------NLILEQMKVPGLLRKHNYSERFQC---LMGRAN  330 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~-~--~~~~-l-s~------D~ir~~~~~~G~~~~~~~~~~~~~---~~~~~~  330 (435)
                      ...+|++.|++||||||.++.+.+.+.. .  .++. . -+      +.|++-+.  +. ..  +.+.-+.   +..++ 
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~--~~-~~--~~~~~e~llf~a~R~-   93 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF--KA-QG--LDSLSELLFFIAMRR-   93 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH--TC-SS--CCHHHHHHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh--CC-CC--CCHHHHHHHHHHHHH-
Confidence            4689999999999999999999876543 1  1222 1 11      12333321  11 11  2222121   11121 


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCcCHHH-H--------HHHHHHHh----cCCcEEEEEECCh-HHHHHHHHHh
Q 013831          331 AIFDVLLSRASRTPRNFIIDQTNVFKSA-R--------KRKLRLFV----NFRKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~-R--------~~~~~~~~----~~~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +.+.+.+.-++.+|..||.|--- .... -        ..++..+.    +...=.+|+++.+ +++++|. .|
T Consensus        94 ~~~~~~I~paL~~g~~VI~DRy~-~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~r  165 (223)
T 3ld9_A           94 EHFVKIIKPSLMQKKIVICDRFI-DSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CK  165 (223)
T ss_dssp             HHHHHTHHHHHHTTCEEEEESCH-HHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-----------
T ss_pred             HHHHHHHHHHHhcCCeEEEccch-hhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-cc
Confidence            23344566678999999999732 1110 0        11222221    1112345788775 8888888 44

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.56  E-value=0.00017  Score=67.21  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=24.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      +.+|++.|++||||||+++.+++.+++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~   28 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            578999999999999999999999854

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.53  E-value=3e-05  Score=71.89  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=17.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHH-hhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWV-KDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~-~~~~  291 (435)
                      ..+++.++|++||||||+++.++ ...+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            35799999999999999999999 6653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.23  E-value=0.00026  Score=65.66  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=23.4

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +...+|.+.|+.||||||+++.++..
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34689999999999999999999877

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.21  E-value=0.0002  Score=65.62  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~  305 (435)
                      .+|.++|+|||||||+++.+++.++   +..+++|.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g---~~~~d~g~i~~   41 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQ---WHLLDSGAIYR   41 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---CCcccCcceee
Confidence            5799999999999999999998876   66788888755

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.15  E-value=0.0024  Score=58.19  Aligned_cols=115  Identities=17%  Similarity=0.138  Sum_probs=60.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHHHh-ccCCCc-----cCCCChHHHHHHHH-HHHHHHHHH-
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQM-KVPGLL-----RKHNYSERFQCLMG-RANAIFDVL-  336 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~~~-~~~G~~-----~~~~~~~~~~~~~~-~~~~~~~~l-  336 (435)
                      ..+|+++|.|||||+|+|+.+.+.++..++.+++- |.+++++ ...|..     ....|.+.+...+. .. ..++.. 
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g-~~~R~~d   89 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWG-EEKRQAD   89 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHH-HHHHHHC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHH-HHHHhcC
Confidence            47999999999999999999988553222444444 6666432 122321     01122222221111 11 111111 


Q ss_pred             ----HHHHhc--CCCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHH
Q 013831          337 ----LSRASR--TPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIR  386 (435)
Q Consensus       337 ----l~~al~--~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R  386 (435)
                          +..++.  ....+|||+.=-     ...++.|+. ++ .+.+|.+.++ +...+|
T Consensus        90 ~~~~~~~~~~~~~~~~vII~dvR~-----~~Ev~~fr~~~g~~~~iirI~as~~~R~~R  143 (202)
T 3ch4_B           90 PGFFCRKIVEGISQPIWLVSDTRR-----VSDIQWFREAYGAVTQTVRVVALEQSRQQR  143 (202)
T ss_dssp             TTTTHHHHSBTCCCSEEEECCCCS-----HHHHHHHHHHHGGGEEEEEEEECHHHHHHT
T ss_pred             chHHHHHHHHhcCCCcEEEeCCCC-----HHHHHHHHHhCCCcEEEEEEECCHHHHHHH
Confidence                222222  224799999622     224555665 33 5777888775 565656

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.13  E-value=0.00033  Score=63.49  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      .+.+.+|.++|.|||||||+++.++..+++  +.+++.|.+
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~   56 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDF   56 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCcc
Confidence            344689999999999999999999988742  778888865

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.13  E-value=0.00037  Score=63.41  Aligned_cols=27  Identities=11%  Similarity=0.426  Sum_probs=24.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..++|+++|++||||||+++.|++.++
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            367899999999999999999998876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.08  E-value=0.00028  Score=63.60  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=31.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      +|.++|.|||||||+++.+++.++   +..++.|.+.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg---~~~~d~d~~~~~   39 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG---VPYLSSGLLYRA   39 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC---CceeccchHHHh
Confidence            789999999999999999999876   567888887654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.08  E-value=0.00081  Score=59.43  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=53.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      .+.++++|+||+||||+++.++....   +..++.++..++.+.+..  .......    .           .++ ..+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~----~-----------~~~-~~~~   99 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKH--LMDEGKD----T-----------KFL-KTVL   99 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHH--HHHHTCC----S-----------HHH-HHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--HhcCchH----H-----------HHH-HHhc
Confidence            57889999999999999999886542   222444555555443310  0000000    0           011 1124


Q ss_pred             CCCeEEEeCC---CcCHHHHHHHHHHHhcC--CcEEEEEEC
Q 013831          343 TPRNFIIDQT---NVFKSARKRKLRLFVNF--RKIAVVVFP  378 (435)
Q Consensus       343 ~g~~vIlD~T---n~~~~~R~~~~~~~~~~--~~~~vv~l~  378 (435)
                      ....+|||..   ..++..+..+++.+...  ....+|+..
T Consensus       100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~ts  140 (180)
T 3ec2_A          100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITT  140 (180)
T ss_dssp             TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence            6778999985   35677777655655442  245555553

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.04  E-value=0.00039  Score=68.11  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      +.+|+++|++||||||+|+.+++.++   ..+++.|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~---~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALP---CELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC---EEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC---CcEEeccch
Confidence            46899999999999999999999987   678888764

>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}

Probab=97.00  E-value=0.0051  Score=54.33  Aligned_cols=135  Identities=10%  Similarity=0.066  Sum_probs=84.8

Q ss_pred             CCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCCCCCC
Q 013831           50 DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKL  129 (435)
Q Consensus        50 d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~~~~~l  129 (435)
                      .+..++.|++|+.+++...    ..+-+=|-++.++..|. -|+|+|.+...        .-.|.++||+++.+-.....
T Consensus        14 ~~G~nI~L~~~~~~A~R~~----sf~~givFS~RPl~~~E-~~~v~I~~~~~--------~wsG~l~~GvT~~dP~~l~~   80 (168)
T 2yue_A           14 VHGDNIRISRDGTLARRFE----SFCRAITFSARPVRINE-RICVKFAEISN--------NWNGGIRFGFTSNDPVTLEG   80 (168)
T ss_dssp             EECTTEEECCSSCCEEECS----CSSCCEEEESSCCCSSC-CEEEEEEECCS--------SSSSCCEEEEESSCGGGTTT
T ss_pred             ccCCCeEECCCCcEEEecc----cCCceEEEECCCCcCCC-EEEEEEEeecC--------CcceeEEEeeeecCHHHcCC
Confidence            5688999999999887642    24446788889998764 36777775421        13589999999865111111


Q ss_pred             CCCCcceEEe----cCCceEeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCCccccccc
Q 013831          130 GETEQSFGFG----GTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSA  205 (435)
Q Consensus       130 G~d~~S~gy~----~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~l~~~~~~  205 (435)
                        +--+|+..    ..|.+. ....+.|+   ..||+|+..++-.    ++++|..||+..|++++. ++          
T Consensus        81 --~lP~~a~~dL~~~~~~W~-~~l~~~~~---~~g~~l~f~v~~~----G~l~~~iNg~~~g~~~~~-V~----------  139 (168)
T 2yue_A           81 --TLPKYACPDLTNRPGFWA-KALHEQYC---EKDNILYYYVNGA----GDVIYGINNEEKGVILTG-ID----------  139 (168)
T ss_dssp             --CCCSSSSSHHHHSTTBCC-EECCSTTC---CSSCEEEEEECTT----SEEEEEESSCEEEEEEEC-CC----------
T ss_pred             --CCCCcCchHHhcCCCEEE-EEeccccc---cCCCEEEEEEcCC----CEEEEEECCCccEEEEcC-CC----------
Confidence              11111110    011110 01122333   6799999999854    699999999999999852 11          


Q ss_pred             cccccCCCceeeEEEEcC
Q 013831          206 VKERQCESAVFPHILLKN  223 (435)
Q Consensus       206 ~~g~~~~~~lfP~v~l~~  223 (435)
                           ...+||..+-+++
T Consensus       140 -----~~~pLwavvDvyG  152 (168)
T 2yue_A          140 -----TRSLLWTVIDIYG  152 (168)
T ss_dssp             -----CSSCCEEEEECCS
T ss_pred             -----CCCceEEEEEccC
Confidence                 1457888888874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.96  E-value=0.0024  Score=57.70  Aligned_cols=26  Identities=23%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .++++++|++||||||+++.+...++
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            46789999999999999999987543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.92  E-value=0.0006  Score=63.28  Aligned_cols=41  Identities=24%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      .....+|.++|.|||||||+++.+++.++   +..++.|.+.+.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg---~~~~d~d~~~~~   53 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG---FTYLDTGAMYRA   53 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcC---CceecCCCeeEc
Confidence            34467899999999999999999998876   667888887654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.86  E-value=0.00071  Score=65.77  Aligned_cols=35  Identities=29%  Similarity=0.294  Sum_probs=31.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      .+.+|+++|++||||||+|..+++.++   ..+||.|.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP---VELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC---EEEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC---CcEEeccc
Confidence            467999999999999999999999987   67888875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.84  E-value=0.00065  Score=66.96  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      .+|+++|++||||||+|+.|++.++   ..+||.|.+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC---Cceeccccc
Confidence            5899999999999999999999987   678888864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.84  E-value=0.0057  Score=53.20  Aligned_cols=25  Identities=24%  Similarity=0.322  Sum_probs=21.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ...++++|+||+||||+|+.+++.+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999998775

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.81  E-value=0.00076  Score=61.45  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=31.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      .+|.++|.|||||||+++.+++.++   +..++.|.+.+.
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g---~~~~~~d~~~~~   40 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS---MIYVDTGAMYRA   40 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC---CceecCChHHHH
Confidence            5789999999999999999999886   678888887543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.81  E-value=0.0021  Score=61.86  Aligned_cols=40  Identities=15%  Similarity=0.073  Sum_probs=31.4

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      +.+..+++.|+||+|||++|+.+++.+. ..++.++...+.
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~-~~~i~v~~~~l~   73 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMG-INPIMMSAGELE   73 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHT-CCCEEEEHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeHHHhh
Confidence            3467889999999999999999999875 336777665543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.76  E-value=0.00049  Score=62.97  Aligned_cols=38  Identities=16%  Similarity=0.209  Sum_probs=27.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i  303 (435)
                      ...++++|+||+||||+|+.++....  +..+..++.+.+
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            46789999999999999999987543  123555655443

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.65  E-value=0.0012  Score=64.40  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=31.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ..+|+++|++||||||+|..+++.++   ..+||.|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcc
Confidence            46899999999999999999999987   678888864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.63  E-value=0.0051  Score=56.63  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=24.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ..+|++.|++||||||.++.+++.+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            578999999999999999999998764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.51  E-value=0.0047  Score=53.77  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=21.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ...++++|+||+||||+|+.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999998765

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=96.46  E-value=0.0085  Score=58.83  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=23.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ..+|.+-|+-||||||.++.+++.+..
T Consensus         7 ~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            7 IVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468888999999999999999988754

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=96.45  E-value=0.027  Score=56.04  Aligned_cols=30  Identities=20%  Similarity=0.074  Sum_probs=22.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCcc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR  294 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~  294 (435)
                      ...+|.+-|+-||||||.++.|++.+....
T Consensus        48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g   77 (376)
T 1of1_A           48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD   77 (376)
T ss_dssp             EEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            355788889999999999999998775433

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.44  E-value=0.0065  Score=58.80  Aligned_cols=39  Identities=15%  Similarity=0.147  Sum_probs=28.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir  304 (435)
                      ...++++|+||+||||+|+.++....  +..++.++...+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            34578999999999999999987652  2336777765543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.38  E-value=0.0028  Score=57.19  Aligned_cols=39  Identities=23%  Similarity=0.159  Sum_probs=29.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i  303 (435)
                      ...+|.++|.+||||||+++.+...++  +..+..++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            468999999999999999999987542  122556666643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.37  E-value=0.0039  Score=60.53  Aligned_cols=39  Identities=31%  Similarity=0.337  Sum_probs=29.7

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~  302 (435)
                      ..+++|+++|++||||||++..++..+.  +..+..++.|.
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~  142 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT  142 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence            4578999999999999999999986532  23466666663

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.36  E-value=0.027  Score=55.11  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ...+++.|+||+||||+|+.+++.+.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            36789999999999999999998765

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.29  E-value=0.0087  Score=57.21  Aligned_cols=25  Identities=36%  Similarity=0.262  Sum_probs=21.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ..-++++|+||+||||+|+.+++.+
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999887654

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=96.21  E-value=0.014  Score=57.26  Aligned_cols=29  Identities=21%  Similarity=0.076  Sum_probs=21.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCcc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR  294 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~  294 (435)
                      ..+|.+-|+-||||||.++.+++.+....
T Consensus         4 ~~fI~~EG~dGsGKTT~~~~La~~L~~~g   32 (331)
T 1e2k_A            4 LLRVYIDGPHGMGKTTTTQLLVALGSRDD   32 (331)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            45788889999999999999998765433

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.20  E-value=0.0028  Score=57.52  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..++|.++|++||||||+++.++..++
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            468999999999999999999987654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.18  E-value=0.017  Score=58.74  Aligned_cols=38  Identities=16%  Similarity=0.206  Sum_probs=28.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~i  303 (435)
                      ..-+++.|+||+||||+|+.++...    ++..++.++...+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~  171 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            4568999999999999999988654    2344666766544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.14  E-value=0.0041  Score=60.77  Aligned_cols=41  Identities=17%  Similarity=0.033  Sum_probs=31.4

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI  303 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~i  303 (435)
                      ...+.+|.++|++||||||+++.+...+.    .....+++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            34578999999999999999999987653    123667777753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.13  E-value=0.0018  Score=62.35  Aligned_cols=39  Identities=8%  Similarity=0.150  Sum_probs=27.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir  304 (435)
                      ..+|.++|.+||||||+|+.+++.++.  ..+.+|+.|.+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            568999999999999999999886431  125678887653

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.09  E-value=0.0029  Score=63.62  Aligned_cols=33  Identities=12%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      .+|+++|++||||||+|..+++.++   ..+||.|.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds   35 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDS   35 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC---CeEeecCc
Confidence            5899999999999999999999987   56788876

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.06  E-value=0.046  Score=52.90  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=26.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .-+++.|+||+||||+|+.++..... .++.++.
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~-~~~~~~~   88 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSA-NIKTTAA   88 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCC-CeEEecc
Confidence            34789999999999999999988753 3555543

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.06  E-value=0.0032  Score=56.31  Aligned_cols=31  Identities=26%  Similarity=0.466  Sum_probs=24.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ++++.|.+||||||||++++.. . ...+.+.+
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT   31 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-A-PQVLYIAT   31 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-C-SSEEEEEC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-C-CCeEEEec
Confidence            4789999999999999999976 3 33556655

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.00  E-value=0.0072  Score=58.72  Aligned_cols=37  Identities=14%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      +.-+++.|+||+|||++|+.++..... .++.++...+
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~-~~~~v~~~~l   87 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDL   87 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTC-EEEEEEHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCC-CEEEEchHHH
Confidence            456899999999999999999988753 4667766554

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.0044  Score=62.35  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ++=++|.|+||+|||++|+.++.+... .++.++..
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~~-~f~~v~~s  216 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTDC-KFIRVSGA  216 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHTC-EEEEEEGG
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhCC-CceEEEhH
Confidence            456899999999999999999998763 36666544

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.92  E-value=0.0041  Score=56.14  Aligned_cols=37  Identities=35%  Similarity=0.310  Sum_probs=28.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      .+++|.++|++||||||+++.++..++. .+.+++.|.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~   41 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDH   41 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCc
Confidence            4689999999999999999999886531 245566554

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=95.79  E-value=0.0057  Score=58.98  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK  293 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~  293 (435)
                      .+.|+|+|+   ||+|+.++|.+++|.+
T Consensus       100 ~RpvVl~Gp---~K~tl~~~Ll~~~p~~  124 (292)
T 3tvt_A          100 TRPVIILGP---LKDRINDDLISEYPDK  124 (292)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTTT
T ss_pred             CCeEEEeCC---CHHHHHHHHHHhChhh
Confidence            467888887   5999999999998863

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.77  E-value=0.0097  Score=57.24  Aligned_cols=39  Identities=21%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~  305 (435)
                      ..-++++|+||+||||+|+.++.... ..++.++...+..
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~~~l~~   87 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPELLT   87 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEhHHHHh
Confidence            46789999999999999999999876 3467777655543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.0068  Score=61.72  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ++=|+|.|+||+|||++|+.++.+... .++.++..
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e~~~-~~~~v~~s  249 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAATIGA-NFIFSPAS  249 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehh
Confidence            567899999999999999999998763 35666544

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.0049  Score=62.63  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=28.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ++=++|.|+||+|||++|+.++.+... .++.++..
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~~~~-~~~~v~~~  240 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANSTKA-AFIRVNGS  240 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHHHTC-EEEEEEGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecc
Confidence            567899999999999999999998763 35666543

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.74  E-value=0.0074  Score=58.39  Aligned_cols=38  Identities=26%  Similarity=0.220  Sum_probs=28.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC---C-ccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---E-KRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~---~-~~~~~ls~D  301 (435)
                      ...++|.++|++||||||+++.++..++   . ..+.+|+.|
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d  119 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence            3468999999999999999999987543   1 225566655

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.73  E-value=0.04  Score=52.80  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=25.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      ..++++|+||+||||+|+.++..... .++.++
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~~-~~~~~~   70 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELGV-NLRVTS   70 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHTC-CEEEEC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCC-CEEEEe
Confidence            45789999999999999999887652 244444

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.72  E-value=0.01  Score=56.12  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ..-+++.|+||+||||+|+.++..+.. .++.++.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~~-~~~~v~~   84 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETNA-TFIRVVG   84 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTTC-EEEEEEG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEeh
Confidence            345899999999999999999998763 3555543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.72  E-value=0.044  Score=54.55  Aligned_cols=34  Identities=18%  Similarity=0.384  Sum_probs=27.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ..-+++.|+||+|||++|+.++..... .++.++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~-~~~~v~~  181 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNA-TFFNISA  181 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcC-cEEEeeH
Confidence            356899999999999999999988753 3555544

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.0043  Score=63.13  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ++=|+|.|+||+|||++|+.++.+... .++.++...
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~~~-~f~~v~~s~  250 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQTNA-TFLKLAAPQ  250 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHhCC-CEEEEehhh
Confidence            577899999999999999999998763 366665543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.70  E-value=0.0071  Score=54.99  Aligned_cols=33  Identities=18%  Similarity=0.165  Sum_probs=27.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ...|+++|++||||||+|..|++...    .+|+.|.
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~----~iIsdDs   66 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH----RLIADDR   66 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC----EEEESSE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC----eEEecch
Confidence            46799999999999999999998764    4566563

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.69  E-value=0.0049  Score=55.65  Aligned_cols=36  Identities=28%  Similarity=0.143  Sum_probs=27.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ..++++++|.|||||||++..++. ..+...+.++.+
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~   54 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTE   54 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECC
Confidence            357999999999999999999987 333345566553

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.66  E-value=0.0057  Score=58.86  Aligned_cols=28  Identities=18%  Similarity=0.064  Sum_probs=24.3

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+.+|.++|.+||||||+|+.+...++
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4578999999999999999999987654

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.0051  Score=62.85  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=29.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ++=|+|.|+||+|||++|+.++.+... .++.++...
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e~~~-~fi~vs~s~  278 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANRTDA-TFIRVIGSE  278 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCC-CeEEEEhHH
Confidence            567899999999999999999998763 366665443

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.63  E-value=0.036  Score=54.89  Aligned_cols=138  Identities=17%  Similarity=0.128  Sum_probs=71.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCccC---CCC-hHHHHHHHHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRK---HNY-SERFQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~~---~~~-~~~~~~~~~~~~~~~~~ll~~a  340 (435)
                      .++++++|++||||||+.+.+....+. .+.+.+. | . .++.. ...+.   +.+ +.......  ........+..+
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie-~-~-~e~~~-~~~~~~v~~v~~q~~~~~~~--~~~t~~~~i~~~  248 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE-D-V-PELFL-PDHPNHVHLFYPSEAKEEEN--APVTAATLLRSC  248 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE-S-S-SCCCC-TTCSSEEEEECC------------CCHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC-C-c-cccCc-cccCCEEEEeecCccccccc--cccCHHHHHHHH
Confidence            468999999999999999999987652 3445553 1 1 12211 10110   111 11100000  011223455566


Q ss_pred             hcCCCe-EEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhhhhc--CCCCcHHHHHHHHh-ccc
Q 013831          341 SRTPRN-FIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEM--GKEVPADAVNNMLA-NYV  411 (435)
Q Consensus       341 l~~g~~-vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~~~~--~~~vp~~vi~~m~~-~fe  411 (435)
                      ++...+ +|++.. -...... +++.+..-+  .+..+.-...+...+|+.......  ++.+|.++++++.+ .+.
T Consensus       249 l~~~pd~~l~~e~-r~~~~~~-~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~~~~~  323 (361)
T 2gza_A          249 LRMKPTRILLAEL-RGGEAYD-FINVAASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQLPYEIIRRLLYLVVD  323 (361)
T ss_dssp             TTSCCSEEEESCC-CSTHHHH-HHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHCC
T ss_pred             HhcCCCEEEEcCc-hHHHHHH-HHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhccccccCCCHHHHHHHHHHHcC
Confidence            665554 455553 2222222 455554422  244444455577888988775443  34688877777654 443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.61  E-value=0.017  Score=63.18  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ++=|+|.|+||+|||++|+.++.++.. .++.++..++
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg~-~~~~v~~~~l  274 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETGA-FFFLINGPEI  274 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTTC-EEEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC-eEEEEEhHHh
Confidence            577999999999999999999998863 3666665554

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.58  E-value=0.008  Score=58.56  Aligned_cols=35  Identities=14%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      +.-+++.|+||+|||++|+.++.......++.++.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~   79 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS   79 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence            46789999999999999999999874444655553

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.55  E-value=0.011  Score=58.32  Aligned_cols=36  Identities=14%  Similarity=0.332  Sum_probs=28.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      .-|+++|+||+||||+|+.++..+.. .++.++...+
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~~-~~~~v~~~~l  120 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDL  120 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTC-EEEEEEHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCC-CEEEeeHHHH
Confidence            45788999999999999999998753 3666665544

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.53  E-value=0.067  Score=52.53  Aligned_cols=35  Identities=14%  Similarity=0.238  Sum_probs=26.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~  300 (435)
                      ..++++.|.||+||||||..++...  .+..+.++|.
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl   82 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL   82 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            5899999999999999999887542  2233555655

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.49  E-value=0.0097  Score=53.22  Aligned_cols=41  Identities=10%  Similarity=0.135  Sum_probs=29.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~  307 (435)
                      ..++++|+||+||||+|+.++....  +..++.++...+...+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL   97 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence            6788999999999999999987542  2235556655554443

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.0072  Score=61.23  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ++=|+|.|+||+|||++|+.++.+... .++.++..+
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e~~~-~fi~v~~s~  251 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQTSA-TFLRIVGSE  251 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHHHTC-EEEEEESGG
T ss_pred             CCCCceECCCCchHHHHHHHHHHHhCC-CEEEEEHHH
Confidence            567899999999999999999998763 366665443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.48  E-value=0.012  Score=54.68  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=26.7

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ++++|+||+||||+++.++.... ...+.++...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~   84 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSD   84 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHH
Confidence            88999999999999999998875 3466665443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.47  E-value=0.0079  Score=54.39  Aligned_cols=27  Identities=26%  Similarity=0.280  Sum_probs=24.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+++.++..++
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            468999999999999999999988775

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.46  E-value=0.0063  Score=53.85  Aligned_cols=26  Identities=46%  Similarity=0.639  Sum_probs=22.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+.+++++|.+||||||++.+++..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            36789999999999999999998764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.45  E-value=0.02  Score=58.72  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =++++|+||+||||+|+.++...
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            35889999999999999998774

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.44  E-value=0.0075  Score=62.61  Aligned_cols=27  Identities=0%  Similarity=-0.092  Sum_probs=24.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ...+|+++|+|||||||+|+.|++.+.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999876

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.42  E-value=0.038  Score=54.22  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=22.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +..++++|+||+||||+|+.+++..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.38  E-value=0.0072  Score=55.34  Aligned_cols=27  Identities=22%  Similarity=0.420  Sum_probs=24.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+++.++..++
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p   48 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFP   48 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            357899999999999999999998775

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.30  E-value=0.01  Score=57.76  Aligned_cols=38  Identities=24%  Similarity=0.086  Sum_probs=28.6

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC---C-ccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---E-KRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~---~-~~~~~ls~D  301 (435)
                      ...++|.++|++||||||+++.++..++   + ..+..++.|
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd  129 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD  129 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence            4578999999999999999999987542   1 234455555

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.29  E-value=0.011  Score=55.20  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=25.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .-++++|+||+||||+|+.++..++. .++.++.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~~-~~~~i~~   78 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISG   78 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC-CEEEECS
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcCC-CEEEEeH
Confidence            34889999999999999999987652 2555543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.28  E-value=0.009  Score=54.24  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=22.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..+++.++|+|||||||+++.++..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999863

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.23  E-value=0.014  Score=56.64  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      ..++++++|..||||||+.+.+....++.++.+|-
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~   37 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE   37 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE
Confidence            36799999999999999999999776444444443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.21  E-value=0.0092  Score=56.78  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=24.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      +++.|+||+||||+++.++...+. ..+.++
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~-~~i~i~   76 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL-NFISVK   76 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC-EEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC-CEEEEE
Confidence            899999999999999999988763 244443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.21  E-value=0.016  Score=54.73  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=27.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      ++++|+||+||||+++.++.... ...+.++...+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~  109 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF  109 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHH
Confidence            88999999999999999998876 34666654433

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.20  E-value=0.011  Score=54.99  Aligned_cols=27  Identities=30%  Similarity=0.162  Sum_probs=23.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ...+|.++|++||||||+++.++..++
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            468999999999999999999988653

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.17  E-value=0.039  Score=56.26  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=25.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      .-+++.|+||+||||+|+.+++.... .++.++
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~-~f~~l~   82 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANA-DVERIS   82 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCC-CeEEEE
Confidence            46899999999999999999998753 355554

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.15  E-value=0.013  Score=54.36  Aligned_cols=34  Identities=18%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      +.-+++.|+||+||||+|+.++..+.. .++.++.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~-~~~~~~~   72 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQV-PFLAMAG   72 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTC-CEEEEET
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEech
Confidence            456889999999999999999987653 3555543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.15  E-value=0.01  Score=52.66  Aligned_cols=49  Identities=16%  Similarity=0.103  Sum_probs=31.6

Q ss_pred             hcCCCeEEEeC----CCcCHHHHHHHHHHHhcCCcEEEEEEC--C-hHHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ----TNVFKSARKRKLRLFVNFRKIAVVVFP--K-PEDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~----Tn~~~~~R~~~~~~~~~~~~~~vv~l~--~-~ee~~~R~~~R  390 (435)
                      +.....+|+|-    +++++..++.+++.+... ...++++.  + +.....+...|
T Consensus        97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A           97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSEEEEECCSSCCSHHHHHHHTC
T ss_pred             ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCeEEEEEccCCCchHHHHHHhc
Confidence            56778999998    567787888777767664 33343333  2 34555666666

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.13  E-value=0.014  Score=55.61  Aligned_cols=34  Identities=18%  Similarity=0.401  Sum_probs=27.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ..-+++.|+||+||||+|+.++..... .++.++.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~-~~~~i~~   87 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSA-TFLNISA   87 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCC-CeEEeeH
Confidence            457899999999999999999998753 3555543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.12  E-value=0.011  Score=50.87  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+.++++|++|+||||+++.++...
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678899999999999999998754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.02  E-value=0.022  Score=56.10  Aligned_cols=35  Identities=14%  Similarity=0.293  Sum_probs=28.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      +.-++++|+||+||||+|+.++.... ..++.++..
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~~-~~~~~i~~~  151 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQSG-ATFFSISAS  151 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHTT-CEEEEEEGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC-CeEEEEehH
Confidence            45789999999999999999999875 335666543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.02  E-value=0.012  Score=56.94  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=27.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ..+++.++|++||||||+++.++..+.  +..+.+.+.|
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D  139 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD  139 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence            478999999999999999999985432  2235555554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.98  E-value=0.014  Score=57.12  Aligned_cols=38  Identities=26%  Similarity=0.275  Sum_probs=28.0

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ..+++++++|++||||||+++.++..+.  +..+...+.|
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D  166 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD  166 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence            4579999999999999999999886432  1224455544

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.98  E-value=0.015  Score=59.30  Aligned_cols=38  Identities=13%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      +.-+++.|+||+|||++|+.++..+....++.++...+
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l  204 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL  204 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence            45789999999999999999999874445666665443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.98  E-value=0.013  Score=49.90  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |++.|.||+|||++|+.++...
T Consensus        27 vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           27 VWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.91  E-value=0.013  Score=52.97  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~  300 (435)
                      .++++++|+|||||||+++.++....  +.....++.
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~   59 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT   59 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence            57899999999999999999884321  122555554

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.87  E-value=0.014  Score=51.68  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=22.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+.+++++|.+||||||+++.+...+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            35789999999999999999998754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.86  E-value=0.017  Score=55.93  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=28.3

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ...++++++|++||||||+++.++..+.  +..+.+.+.|
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d  137 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD  137 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence            3578999999999999999999986532  2235555555

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=94.85  E-value=0.0075  Score=51.28  Aligned_cols=29  Identities=17%  Similarity=0.192  Sum_probs=23.2

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      |++.|.||+|||++|+.++....  .++.++
T Consensus        30 vll~G~~GtGKt~lA~~i~~~~~--~~~~~~   58 (143)
T 3co5_A           30 VFLTGEAGSPFETVARYFHKNGT--PWVSPA   58 (143)
T ss_dssp             EEEEEETTCCHHHHHGGGCCTTS--CEECCS
T ss_pred             EEEECCCCccHHHHHHHHHHhCC--CeEEec
Confidence            78899999999999999987654  355543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.85  E-value=0.018  Score=50.12  Aligned_cols=28  Identities=18%  Similarity=0.202  Sum_probs=24.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ..+++.++|+.||||||+.+.++..++.
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~~   59 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            3689999999999999999999987653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.84  E-value=0.016  Score=58.99  Aligned_cols=37  Identities=30%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      .+.+|+++|++||||||++.+++..+.  ++++.+++.|
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            478999999999999999999875432  2346666666

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.78  E-value=0.014  Score=59.47  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=29.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~  302 (435)
                      .+.+|+++|+||+||||.+.+++..+.  ++++.+++.|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~  138 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT  138 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            478999999999999999999875432  33466777663

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=94.76  E-value=0.069  Score=51.51  Aligned_cols=107  Identities=10%  Similarity=-0.033  Sum_probs=62.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      ...+|++-|.-||||||.++.+...+....+.++.+.       -++.          ++..   ...+.......-..|
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~-------~Pt~----------eE~~---~~yl~R~~~~LP~~G  144 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT-------KPTE----------TERG---QWYFQRYVATFPTAG  144 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC-------SCCH----------HHHT---SCTTHHHHTTCCCTT
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC-------CcCh----------HHHh---chHHHHHHHhcccCC
Confidence            3688999999999999999999999876555444321       0110          0000   001111222223789


Q ss_pred             CeEEEeCCCcCHH------------HHHHHHHHHhc-------CC-cEEEEEECCh-HHHHHHHHHhh
Q 013831          345 RNFIIDQTNVFKS------------ARKRKLRLFVN-------FR-KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       345 ~~vIlD~Tn~~~~------------~R~~~~~~~~~-------~~-~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ..||+|-..+..-            ...+.++.+..       .+ ....++|+.+ ++.++|...|.
T Consensus       145 ~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~  212 (304)
T 3czq_A          145 EFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRR  212 (304)
T ss_dssp             CEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             eEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhh
Confidence            9999997644332            11122333322       12 3344678775 88899998874

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=94.69  E-value=0.031  Score=52.26  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=27.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILE  305 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~  305 (435)
                      .+|.++|.+||||||+|+.+...++   +.+++. +.+++
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g---~~~~~~~~~~~~   38 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIKD   38 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC---CeEEecChHHHH
Confidence            5789999999999999999988766   555654 34433

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.68  E-value=0.2  Score=50.96  Aligned_cols=36  Identities=14%  Similarity=0.357  Sum_probs=26.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~  300 (435)
                      ...++++.|.||+||||++..++...   .+..+..+|.
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            36799999999999999999987542   1223566664

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.67  E-value=0.014  Score=53.48  Aligned_cols=25  Identities=20%  Similarity=0.178  Sum_probs=22.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..++++++|+|||||||+++.++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3579999999999999999999873

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.63  E-value=0.019  Score=55.33  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNL  302 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D~  302 (435)
                      ..++++++|++||||||++..++..+   .++++..+..|.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            46799999999999999999998543   233466666653

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.59  E-value=0.027  Score=55.48  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=26.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .-++++|+||+||||+|+.+++.+. ..++.++.
T Consensus        52 ~~vll~GppGtGKT~la~~ia~~~~-~~~~~~~~   84 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLARLLD-VPFTMADA   84 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC-CCEEEech
Confidence            4578999999999999999999875 33666644

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.59  E-value=0.017  Score=55.14  Aligned_cols=25  Identities=24%  Similarity=0.330  Sum_probs=22.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..++++++|.|||||||+++.++..
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3689999999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.58  E-value=0.02  Score=54.36  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=26.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .-++++|+||+||||+|+.+++.++. .++.++.
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~l~~-~~~~i~~   83 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA   83 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEcc
Confidence            45789999999999999999988753 3555543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.58  E-value=0.014  Score=57.08  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=22.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ...++++|+||+||||+|+.++....
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            35688999999999999999998764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.58  E-value=0.2  Score=50.77  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=26.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC---CCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~  300 (435)
                      ..+++++|.||+||||||..++...   .+..+..+|.
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            5799999999999999999887542   1234566665

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.57  E-value=0.018  Score=51.83  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=22.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +.+++++|+||+||||+|+.+++..
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3588999999999999999998765

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.56  E-value=0.018  Score=52.74  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=26.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      .++++++|.|||||||++.+++...  .+...+.++.+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            5799999999999999998886532  12235666654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.53  E-value=0.022  Score=56.52  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=28.6

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ...++++|+|++||||||+++.++..+.  +..+.+.+.|
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D  194 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD  194 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence            3578999999999999999999986532  2235555555

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=94.48  E-value=0.023  Score=55.84  Aligned_cols=28  Identities=25%  Similarity=0.022  Sum_probs=24.1

Q ss_pred             ceEEEEEccCCCChhHHH-HHHHhhCCCc
Q 013831          266 CEVMMMVGLPASGKTTWA-EKWVKDHPEK  293 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A-~~l~~~~~~~  293 (435)
                      ..+|.+-|.-||||||.+ +.+.+.++..
T Consensus        12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~~~   40 (341)
T 1osn_A           12 VLRIYLDGAYGIGKTTAAEEFLHHFAITP   40 (341)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence            568889999999999999 9998887643

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.47  E-value=0.034  Score=52.24  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=26.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~l  298 (435)
                      ...-++++|+||+||||+|+.++..... .++.+
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~-~~~~i   95 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNF-PFIKI   95 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTC-SEEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCC-CEEEE
Confidence            3567899999999999999999987643 35555

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.47  E-value=0.025  Score=57.58  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .-|+|+|+||+||||+|+.+++.++. .++.++.
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l~~-~~~~v~~   83 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA   83 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC-Cceeecc
Confidence            45889999999999999999998863 3566654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.36  E-value=0.024  Score=59.37  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=27.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ...++++|+||+||||+|+.++..++. .+..++.
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~  141 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISL  141 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEe
Confidence            568999999999999999999987653 2445543

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=94.27  E-value=0.025  Score=51.27  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=20.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +-+++++|.||||||++|..+...
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHH
Confidence            458899999999999999887543

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=94.26  E-value=0.071  Score=55.01  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      +.-+++.|+||+|||++|+.++.... ..++.++...+.
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~~-~~fv~vn~~~l~  275 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANETG-AFFFLINGPEIM  275 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHCS-SEEEEEEHHHHH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHhC-CCEEEEEchHhh
Confidence            34588999999999999999998875 447777765543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.25  E-value=0.022  Score=50.65  Aligned_cols=22  Identities=32%  Similarity=0.512  Sum_probs=20.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      ++++|+||+||||+|+.+++.+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.23  E-value=0.019  Score=51.61  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++.++|++||||||+.+.++..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            468899999999999999988654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.23  E-value=0.027  Score=53.23  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=22.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ..++++++|++||||||+.+.++...
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhC
Confidence            35799999999999999999988654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.19  E-value=0.017  Score=52.73  Aligned_cols=27  Identities=11%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ...+++.|+||+||||+|..+++.+.+
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g   84 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQG   84 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999988754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.17  E-value=0.024  Score=56.60  Aligned_cols=28  Identities=25%  Similarity=0.157  Sum_probs=24.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ..++++++|+|||||||+++.++....+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g  195 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCGG  195 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            3579999999999999999999987654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.16  E-value=0.025  Score=58.61  Aligned_cols=38  Identities=32%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ..+.+|+++|+||+||||++.+|+..+.  +++..+++.|
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D  138 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD  138 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            4578999999999999999999985432  2336666665

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.13  E-value=0.028  Score=54.79  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ..+++|+++|++|+||||++..++..+.  ++++..+..|
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D  142 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD  142 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3478999999999999999999875432  3346666655

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.07  E-value=0.037  Score=51.67  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=25.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCC--ccEEEec
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLG  299 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls  299 (435)
                      .-+++.|.||+|||++|+.++...+.  ..++.++
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~   64 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN   64 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence            34788999999999999999987642  2366665

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.06  E-value=0.013  Score=51.76  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ++++.++|.+||||||+++.+...+
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4688999999999999999998764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.05  E-value=0.026  Score=52.39  Aligned_cols=26  Identities=23%  Similarity=0.152  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++.-.+
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            58899999999999999999987654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.04  E-value=0.036  Score=54.79  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=25.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      .-++++|+||+||||+|+.+++.+.. .++.++
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~  104 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHLDI-PIAISD  104 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCC-CEEEec
Confidence            45789999999999999999998752 355554

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.02  E-value=0.026  Score=54.64  Aligned_cols=27  Identities=15%  Similarity=0.310  Sum_probs=23.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+++.++..+.
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~  151 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFLG  151 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence            357899999999999999999988764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.00  E-value=0.024  Score=53.68  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=21.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      ..++++++|.|||||||++..++.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            467999999999999999999874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=93.99  E-value=0.029  Score=57.84  Aligned_cols=27  Identities=37%  Similarity=0.434  Sum_probs=23.5

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ...++++|+|++||||||+++.++..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            357899999999999999999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.94  E-value=0.2  Score=53.02  Aligned_cols=52  Identities=6%  Similarity=0.007  Sum_probs=35.6

Q ss_pred             HHhcCCCeEEEe--CCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 013831          339 RASRTPRNFIID--QTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR  390 (435)
Q Consensus       339 ~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R  390 (435)
                      ..+.....+|+|  .+++++..+..+++.+....  ..+++++.-+-....+...|
T Consensus       235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~dr  290 (608)
T 3j16_B          235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF  290 (608)
T ss_dssp             HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSE
T ss_pred             HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            335678899999  58899999998888877643  46777776542333444444

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.93  E-value=0.031  Score=49.64  Aligned_cols=32  Identities=13%  Similarity=0.130  Sum_probs=25.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ..-++++|.+|+||||+|..+.+.-    +..++.|
T Consensus        16 G~gvli~G~SGaGKStlal~L~~rG----~~lvaDD   47 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDRG----HQLVCDD   47 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHTT----CEEEESS
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC----CeEecCC
Confidence            4578999999999999999998852    4455544

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.90  E-value=0.031  Score=49.77  Aligned_cols=24  Identities=29%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..+++++|+|||||||.+.+++.+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999766654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=93.80  E-value=0.034  Score=56.48  Aligned_cols=38  Identities=29%  Similarity=0.382  Sum_probs=29.4

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D  301 (435)
                      ..+.+|+++|++|+||||.+.+|+..+.   ++++..++.|
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D  138 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD  138 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            3578999999999999999999875432   3456777766

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.76  E-value=0.039  Score=54.40  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=28.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ...+|+++|.||+||||++.+++..+  .++++.++..|
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            46789999999999999999997653  22345666665

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.76  E-value=0.083  Score=57.40  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=20.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      ++++|+||+||||+|+.++...
T Consensus       204 vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          204 PVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             EEEESCTTTTTHHHHHHHHHHH
T ss_pred             eEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=93.75  E-value=0.084  Score=57.69  Aligned_cols=39  Identities=21%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~  305 (435)
                      ++=++|.|+||+|||.+|+.++.+... .++.++..++..
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~-~f~~v~~~~l~s  549 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQA-NFISIKGPELLT  549 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTC-EEEECCHHHHHT
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCC-ceEEeccchhhc
Confidence            345789999999999999999998863 467776665543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=93.74  E-value=0.016  Score=54.22  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=21.0

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ++++|+||+||||+|+.++....
T Consensus        47 vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            78999999999999999998764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.73  E-value=0.16  Score=55.99  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      -++++|+||+||||+|+.++...
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHH
Confidence            36889999999999999998765

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.69  E-value=0.026  Score=54.70  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=21.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +++.|+||+|||++|+.++..++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            88999999999999999998876

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=93.69  E-value=0.036  Score=54.81  Aligned_cols=25  Identities=36%  Similarity=0.468  Sum_probs=21.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ...|+++|+|||||||+++.++..+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHh
Confidence            3458899999999999999988754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.69  E-value=0.032  Score=51.37  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=23.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999987654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=93.69  E-value=0.043  Score=53.05  Aligned_cols=42  Identities=12%  Similarity=0.022  Sum_probs=30.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~ir~~~  307 (435)
                      ..-+++.|+||+|||++|+.++....   +..++.++...+...+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l  196 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV  196 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence            35788999999999999999876432   2335556666665554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=93.68  E-value=0.035  Score=52.85  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=25.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCC--ccEEEecc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGT  300 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~  300 (435)
                      ..++++|+||+||||+|+.++..+..  ..++.++.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~   83 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   83 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence            57899999999999999999886531  22555543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.65  E-value=0.031  Score=51.89  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=22.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+++.++|++||||||+.+.++...
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            5789999999999999999998765

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.60  E-value=0.037  Score=51.55  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=22.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +++.++|++||||||+.+.++...+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999987653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.59  E-value=0.049  Score=51.31  Aligned_cols=33  Identities=24%  Similarity=0.195  Sum_probs=26.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~l  298 (435)
                      .+++.++|++||||||+.+.++...+..+-+.+
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i   78 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKI   78 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCeEEEE
Confidence            578999999999999999999876543334444

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.55  E-value=0.042  Score=49.53  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ....|+++|.+||||||++.+++...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35688999999999999999998763

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.54  E-value=0.035  Score=50.61  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=21.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .+++.++|++||||||+.+.++..
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            578899999999999999998764

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.49  E-value=0.036  Score=50.71  Aligned_cols=24  Identities=25%  Similarity=0.542  Sum_probs=20.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      ...+++++|.||+||||||.+++.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            357999999999999999988753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.45  E-value=0.042  Score=51.16  Aligned_cols=27  Identities=15%  Similarity=0.137  Sum_probs=23.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+.+.++...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            358999999999999999999987653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.35  E-value=0.04  Score=51.99  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=23.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+.+.++.-.+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            357899999999999999999987654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.34  E-value=0.056  Score=50.12  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D  301 (435)
                      ....+++++|.+|+||||++..++..+. +.+..+++.|
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D   50 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   50 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3467899999999999999999985432 2335666655

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=93.33  E-value=0.042  Score=52.94  Aligned_cols=36  Identities=33%  Similarity=0.326  Sum_probs=28.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      +++++++|.+|+||||++..++..+.  +.+..+++.|
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            78999999999999999999885432  2346666666

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=93.33  E-value=0.044  Score=56.35  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=26.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      +=++++|+||+||||+|+.++.+.+ ..++.++..
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~-~~f~~is~~   83 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEAN-VPFFHISGS   83 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHT-CCEEEEEGG
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC-CCeeeCCHH
Confidence            3488999999999999999998765 236666543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.28  E-value=0.042  Score=51.96  Aligned_cols=50  Identities=12%  Similarity=0.192  Sum_probs=32.7

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R  390 (435)
                      +.....+|+|-  +++++..|...++.+.+..  ..+++++.-+-+...+...|
T Consensus       175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~  228 (263)
T 2olj_A          175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDR  228 (263)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred             HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCE
Confidence            56677889995  7788988888887776542  46676665442233444444

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.27  E-value=0.042  Score=48.62  Aligned_cols=24  Identities=13%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      -.++++|.+||||||+.+.+....
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468899999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.25  E-value=0.042  Score=46.60  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3788999999999999999864

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.24  E-value=0.058  Score=55.91  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      +..++++|+||+||||+|+.+++.++ ..++.++
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~-~~~i~in  109 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELG-YDILEQN  109 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC-CCEEEEe
Confidence            46899999999999999999999885 2345554

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=93.23  E-value=0.056  Score=55.93  Aligned_cols=31  Identities=26%  Similarity=0.393  Sum_probs=25.8

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      ++++|+||+||||+|+.++.... ..++.++.
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g   97 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR-VPFITASG   97 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-CCEEEEeh
Confidence            89999999999999999998875 33666654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.22  E-value=0.04  Score=52.50  Aligned_cols=26  Identities=23%  Similarity=0.208  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            57899999999999999999987654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.22  E-value=0.043  Score=46.26  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.8

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+++|.+|+||||+..++....
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7889999999999999998654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.21  E-value=0.04  Score=52.18  Aligned_cols=48  Identities=23%  Similarity=0.315  Sum_probs=33.0

Q ss_pred             CCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 013831          343 TPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR  390 (435)
Q Consensus       343 ~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~ee~~~R~~~R  390 (435)
                      ..+.+|+|-  +++++..+..+++.+.+..   ..+++++.-+-+...+...|
T Consensus       165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~  217 (266)
T 4g1u_C          165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADR  217 (266)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSE
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCE
Confidence            677899995  7889999998888877642   46777775542333444444

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=93.20  E-value=0.072  Score=52.22  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=22.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ...+++++|.|||||||+|..++..
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.19  E-value=0.043  Score=46.14  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||++.++...
T Consensus         6 i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999865

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=93.16  E-value=0.036  Score=56.50  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .-+++.|+||+||||+|+.++..++
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHhC
Confidence            4588999999999999999998765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.15  E-value=0.044  Score=50.57  Aligned_cols=26  Identities=15%  Similarity=0.245  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|+.||||||+.+.++...+
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            57899999999999999999987654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.15  E-value=0.045  Score=51.95  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=30.2

Q ss_pred             HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh
Q 013831          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP  380 (435)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~  380 (435)
                      .+.....+|+|-  +++++..+..+++.+....   ..++|++.-+
T Consensus       171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd  216 (271)
T 2ixe_A          171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ  216 (271)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred             HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence            356778999995  7889999998888887652   4567666443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.14  E-value=0.044  Score=51.24  Aligned_cols=26  Identities=31%  Similarity=0.262  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999987654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=93.12  E-value=0.039  Score=53.87  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+..++++|+||+||||+|+.+++..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35678999999999999999998765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.09  E-value=0.039  Score=56.07  Aligned_cols=38  Identities=32%  Similarity=0.429  Sum_probs=29.0

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ..+.+|+++|+||+||||++.+++..+.  +.++.+++.|
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            3467999999999999999999886542  1236677766

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.05  E-value=0.046  Score=50.79  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999987653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.04  E-value=0.046  Score=51.37  Aligned_cols=26  Identities=23%  Similarity=0.253  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57899999999999999999987654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.04  E-value=0.048  Score=46.02  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+..++...
T Consensus         6 i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999854

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.02  E-value=0.054  Score=53.83  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=22.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ...+++++|++||||||+.+.++...
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35789999999999999999998654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.99  E-value=0.051  Score=51.45  Aligned_cols=24  Identities=29%  Similarity=0.356  Sum_probs=22.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .+++.++|++||||||+.+.++..
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999999875

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=92.98  E-value=0.033  Score=53.86  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=22.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      -+++.|+||+|||++|+.++..++.
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~   72 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDL   72 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCC
Confidence            4789999999999999999988763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.97  E-value=0.054  Score=53.09  Aligned_cols=26  Identities=19%  Similarity=0.187  Sum_probs=22.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ....++.++|.|||||||+.+.+...
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34689999999999999999999854

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=92.97  E-value=0.041  Score=50.41  Aligned_cols=34  Identities=24%  Similarity=0.135  Sum_probs=26.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls  299 (435)
                      .+++.++|++||||||+.+.++...+ ..+-+.++
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~   69 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN   69 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence            57889999999999999999987654 23344443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=92.96  E-value=0.05  Score=50.92  Aligned_cols=24  Identities=29%  Similarity=0.392  Sum_probs=22.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .+++.++|++||||||+.+.++..
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999999885

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.95  E-value=0.05  Score=51.18  Aligned_cols=26  Identities=23%  Similarity=0.164  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999987654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.95  E-value=0.05  Score=45.94  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         7 i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.95  E-value=0.046  Score=53.17  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++.|+||+||||+|+.+++.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=92.94  E-value=0.044  Score=53.46  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=22.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+..++++|+||+||||+++.++...
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            35688999999999999999998765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.90  E-value=0.05  Score=48.25  Aligned_cols=22  Identities=14%  Similarity=0.474  Sum_probs=19.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      -++++|.+|+||||+.+.+...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=92.88  E-value=0.064  Score=48.46  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ...|+++|.+|+||||++.+++...
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4677888999999999999998763

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.84  E-value=0.053  Score=45.97  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            788999999999999999754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.82  E-value=0.05  Score=52.69  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++.|+||+||||+|+.+++.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.81  E-value=0.053  Score=46.02  Aligned_cols=23  Identities=22%  Similarity=0.396  Sum_probs=20.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =|+++|.+|+||||+.+++....
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            37889999999999999998654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=92.80  E-value=0.054  Score=51.19  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++.-.+
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            57899999999999999999987654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=92.80  E-value=0.052  Score=53.45  Aligned_cols=26  Identities=23%  Similarity=0.127  Sum_probs=23.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ..+++.++|+|||||||++..++...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999999998765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=92.77  E-value=0.062  Score=52.88  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ...+|.++|.|||||||+...+...
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=92.76  E-value=0.069  Score=51.85  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=28.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--C------CccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--P------EKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~------~~~~~~ls~D  301 (435)
                      ...+++++|.|||||||+|..++...  +      +...+.++++
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e  150 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE  150 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence            35799999999999999999998653  2      2345666654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.76  E-value=0.054  Score=46.55  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      -=|+++|.+|+||||+..++....
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            347889999999999999998653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.73  E-value=0.16  Score=58.73  Aligned_cols=110  Identities=11%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEec--------cHHHHHHhccC--------CCccCC-CCh---HHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG--------TNLILEQMKVP--------GLLRKH-NYS---ERFQC  324 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls--------~D~ir~~~~~~--------G~~~~~-~~~---~~~~~  324 (435)
                      .+.+.++|++||||||+++.+.+.++. .+-+.++        .+.+|+.+...        |..+++ .+.   ...++
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~  523 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREE  523 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHH
T ss_pred             CcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHH
Confidence            578999999999999999999987652 2334443        24555554421        111110 010   01233


Q ss_pred             HHHHHHHH-HHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831          325 LMGRANAI-FDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVN-FRKIAVVVF  377 (435)
Q Consensus       325 ~~~~~~~~-~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~-~~~~~vv~l  377 (435)
                      +.+.++.+ +.+.+ ..+..|.+.+|-  ..+++-.+|++ +..++. +.+-.++.+
T Consensus       524 v~~a~~~a~l~~~i-~~lp~G~~T~vGe~G~~LSGGQkQR-iaiARAl~~~~~IliL  578 (1321)
T 4f4c_A          524 MVAACKMANAEKFI-KTLPNGYNTLVGDRGTQLSGGQKQR-IAIARALVRNPKILLL  578 (1321)
T ss_dssp             HHHHHHHTTCHHHH-HHSTTTTSSEESSSSCCCCHHHHHH-HHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHccchhHH-HcCCCCCccEecCCCCCCCHHHHHH-HHHHHHHccCCCEEEE
Confidence            33333221 22333 234667665554  37888888886 666665 444444444

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.72  E-value=0.056  Score=46.41  Aligned_cols=23  Identities=17%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =|+++|.||+||||+..++....
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999998653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.69  E-value=0.055  Score=45.91  Aligned_cols=21  Identities=24%  Similarity=0.577  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            788999999999999999854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.69  E-value=0.055  Score=51.60  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            57899999999999999999987653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.69  E-value=0.056  Score=45.90  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            788999999999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=92.68  E-value=0.059  Score=51.74  Aligned_cols=37  Identities=35%  Similarity=0.443  Sum_probs=27.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ..+++.++|.+|+||||++..++..+.  +.++..++.|
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d  135 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD  135 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            468899999999999999999875432  2345566554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.67  E-value=0.056  Score=50.64  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++...+
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            57899999999999999999987654

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=92.67  E-value=0.063  Score=52.38  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..++++.|+||+||||+|..++..
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            457789999999999999999875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.67  E-value=0.056  Score=46.20  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.||+||||+.+++...
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            3789999999999999999754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.65  E-value=0.057  Score=46.33  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..|+++|.||+||||+.+++...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            45889999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.64  E-value=0.057  Score=45.92  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3788999999999999999854

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.63  E-value=0.058  Score=45.66  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+.+++...
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            788999999999999999864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=92.61  E-value=0.058  Score=52.84  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=22.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..++++|+||+||||+++.++....
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHh
Confidence            3889999999999999999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.61  E-value=0.063  Score=46.10  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.||+||||+..++...
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3789999999999999999754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=92.60  E-value=0.057  Score=53.31  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+.+.++|.+||||||+++.++..++
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999998765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.53  E-value=0.06  Score=45.79  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=18.3

Q ss_pred             EEEEccCCCChhHHHHHHHh
Q 013831          269 MMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~  288 (435)
                      |+++|.||+||||+..++..
T Consensus         5 i~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999974

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.51  E-value=0.06  Score=50.50  Aligned_cols=51  Identities=10%  Similarity=0.247  Sum_probs=33.3

Q ss_pred             HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ..+.+...+|+|-  +++++..|...++.+....   ..+++++.-+ +.+ .+...|
T Consensus       142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~-~~~~d~  198 (253)
T 2nq2_C          142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV-VAIANK  198 (253)
T ss_dssp             HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH-HHHCSE
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCE
Confidence            3357788999996  7799999998888776542   3566666433 443 344334

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.51  E-value=0.057  Score=45.78  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+.+++...
T Consensus         5 i~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHcCc
Confidence            688999999999999999643

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=92.50  E-value=0.067  Score=52.91  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=27.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      ...++++.|+|||||||++..++....  +..++.++.+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E   98 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE   98 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            358999999999999999999886531  2235556553

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.49  E-value=0.061  Score=47.09  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .-|+++|.+|+||||+..++....
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            457899999999999999998764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=92.49  E-value=0.067  Score=51.76  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=26.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~  300 (435)
                      ...+++++|.||+||||||..++...  .+.....+|.
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl  104 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  104 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence            36899999999999999999987532  2233556654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.48  E-value=0.08  Score=50.02  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=28.8

Q ss_pred             HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCCcEEEEEEC
Q 013831          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFP  378 (435)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~  378 (435)
                      .+.....+|+|-  +++++..|...++.+..+.. +++++.
T Consensus       143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivt  182 (263)
T 2pjz_A          143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVT  182 (263)
T ss_dssp             HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEE
T ss_pred             HHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEE
Confidence            356778899995  77889999988888887655 666553

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.48  E-value=0.063  Score=45.47  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.47  E-value=0.054  Score=47.37  Aligned_cols=21  Identities=43%  Similarity=0.629  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+.+++...
T Consensus         5 v~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999863

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=92.41  E-value=0.5  Score=45.27  Aligned_cols=25  Identities=12%  Similarity=0.337  Sum_probs=20.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ..++|+++|+   ||+|+.++|.+.++.
T Consensus       104 ~~r~ivl~GP---gK~tl~~~L~~~~~~  128 (295)
T 1kjw_A          104 YARPIIILGP---TKDRANDDLLSEFPD  128 (295)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTT
T ss_pred             CCCEEEEECC---CHHHHHHHHHhhCcc
Confidence            3578899997   799999999988763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.38  E-value=0.065  Score=45.89  Aligned_cols=24  Identities=13%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      -=|+++|.+|+||||+..++....
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            347889999999999999998643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.37  E-value=0.065  Score=45.99  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .-|+++|.+|+||||+..++...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            34788999999999999999865

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.36  E-value=0.087  Score=51.57  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ....+|.++|.||+||||++..++..
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            34688899999999999999999754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.35  E-value=0.065  Score=46.77  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      -|+++|.+|+||||++.++...
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4788999999999999999865

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=92.34  E-value=0.044  Score=48.77  Aligned_cols=25  Identities=12%  Similarity=0.165  Sum_probs=21.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ...|+++|.+||||||+.+.+....
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            5678999999999999999887543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=92.32  E-value=0.07  Score=46.60  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +.+++|..||||||+.+.+.-.+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            88999999999999999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.25  E-value=0.068  Score=46.38  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999999864

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=92.25  E-value=0.14  Score=45.88  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=25.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEe
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILL  298 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~l  298 (435)
                      ..++++++|.+||||||.+-+++.+.  .+.++.++
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~   42 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF   42 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            35799999999999999988887654  23345555

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.24  E-value=0.07  Score=47.81  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .-|+++|.+|+||||++.++....
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            457899999999999999998764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.23  E-value=0.063  Score=50.87  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+.++|++||||||+.+.++...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47889999999999999998653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=92.23  E-value=0.079  Score=52.35  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ..+++++|++||||||+.+.++...
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            4599999999999999999887654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.22  E-value=0.055  Score=52.60  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      ++++|+||+||||+++.++..
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999884

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.22  E-value=0.078  Score=45.94  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=20.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .-|+++|.||+||||+..++...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45889999999999999999865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.21  E-value=0.054  Score=52.92  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=26.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEe
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL  298 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~l  298 (435)
                      .++++++|++||||||+.+.++...+. .+.+.+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i  204 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  204 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE
Confidence            468999999999999999999987642 334444

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=92.20  E-value=0.084  Score=45.27  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..-|+++|.+|+||||+..++...
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            446889999999999999999754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=92.20  E-value=0.064  Score=52.84  Aligned_cols=37  Identities=24%  Similarity=0.210  Sum_probs=27.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ..+++++.|.|||||||+|..++...  .+..+..++.+
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            35799999999999999999987542  12235566553

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.18  E-value=0.07  Score=45.95  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4788999999999999999864

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=92.16  E-value=0.076  Score=51.17  Aligned_cols=28  Identities=21%  Similarity=0.338  Sum_probs=22.8

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhh
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .+...-.|.++|.||+||||+..++...
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3334568899999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.16  E-value=0.067  Score=46.82  Aligned_cols=23  Identities=13%  Similarity=0.368  Sum_probs=20.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .-|+++|.+|+||||+..++...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999999999865

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=92.13  E-value=0.12  Score=45.31  Aligned_cols=23  Identities=13%  Similarity=0.309  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =|+++|.+|+||||+..++....
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            37899999999999999998643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.12  E-value=0.073  Score=45.25  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      --|+++|.+|+||||+..++...
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            34789999999999999999754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=92.11  E-value=0.072  Score=46.49  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.11  E-value=0.073  Score=46.10  Aligned_cols=21  Identities=19%  Similarity=0.482  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         7 i~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            7 LVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.10  E-value=0.072  Score=46.33  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..-|+++|.+|+||||+.+++...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346889999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.05  E-value=0.075  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4788999999999999999854

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=92.04  E-value=0.26  Score=50.85  Aligned_cols=108  Identities=12%  Similarity=-0.036  Sum_probs=61.2

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC-ccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ....+|++-|.-||||+|.++.+...+....+.+++..       -++. .....|              +.+.....-.
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~-------~Pt~~E~~~~y--------------l~R~~~~lP~   99 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFL-------RPSDEELERPP--------------QWRFWRRLPP   99 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECS-------SCCHHHHTSCT--------------THHHHHHCCC
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeC-------CCChhhccCCh--------------hhhHHHhCCC
Confidence            45789999999999999999999998875555444321       0110 000111              1112333456


Q ss_pred             CCCeEEEeCCCcCH------------HHHHHHHHHHhcC-------C-cEEEEEECCh-HHHHHHHHHhhh
Q 013831          343 TPRNFIIDQTNVFK------------SARKRKLRLFVNF-------R-KIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~------------~~R~~~~~~~~~~-------~-~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      .|..+|+|-..+..            ....+.++.+..|       + .+..++++.+ ++..+|+..|..
T Consensus       100 ~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~  170 (500)
T 3czp_A          100 KGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEK  170 (500)
T ss_dssp             TTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-----
T ss_pred             CCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence            89999999764332            3222333333222       2 3445678876 889999998853

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=92.03  E-value=0.077  Score=53.75  Aligned_cols=37  Identities=35%  Similarity=0.443  Sum_probs=28.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D  301 (435)
                      .+++++++|++||||||++..++..+.  +.++..+..|
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D  135 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD  135 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence            478999999999999999999986542  2346666665

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=92.03  E-value=0.26  Score=50.76  Aligned_cols=38  Identities=16%  Similarity=0.080  Sum_probs=28.5

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D  301 (435)
                      ....++++.|.||+||||||..++....   +..+..+|.+
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            3467999999999999999999875432   2346666653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=92.03  E-value=0.067  Score=53.74  Aligned_cols=23  Identities=13%  Similarity=0.198  Sum_probs=20.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWV  287 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~  287 (435)
                      ..+++.++|.|||||||++..++
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            35799999999999999999775

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=92.02  E-value=0.32  Score=52.60  Aligned_cols=24  Identities=29%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .-++++|.||+||||+|+.++...
T Consensus       208 ~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          208 NNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHHH
Confidence            446899999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.01  E-value=0.081  Score=44.71  Aligned_cols=21  Identities=48%  Similarity=0.545  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.01  E-value=0.051  Score=52.58  Aligned_cols=26  Identities=19%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+++.++..++
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCCC
Confidence            57899999999999999999987654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.00  E-value=0.075  Score=46.29  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.||+||||+.+++...
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3788999999999999999865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.97  E-value=0.081  Score=53.46  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=22.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++++|++||||||+.+.++...+
T Consensus       167 ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            57999999999999999999887653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.95  E-value=0.078  Score=45.57  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =|+++|.+|+||||+..++....
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999997643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.95  E-value=0.077  Score=45.96  Aligned_cols=22  Identities=14%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3788999999999999999754

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=91.95  E-value=0.075  Score=50.66  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++.|+||+||||+|+.+++.+
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999998774

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.92  E-value=0.077  Score=46.05  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            688999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.90  E-value=0.079  Score=46.43  Aligned_cols=22  Identities=18%  Similarity=0.507  Sum_probs=19.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.89  E-value=0.08  Score=45.31  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4778899999999999999854

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.85  E-value=0.076  Score=45.55  Aligned_cols=22  Identities=14%  Similarity=0.444  Sum_probs=19.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3788999999999999999754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.84  E-value=0.091  Score=45.63  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      --|+++|.+|+||||+..++...
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45789999999999999999865

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=91.84  E-value=0.09  Score=50.53  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=26.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      +.++++.|+||+||||+|+.+++.+. ..++.++
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~-~~~~~i~   80 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVN-ADMMFVN   80 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTT-EEEEEEE
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhC-CCEEEEc
Confidence            46889999999999999999999875 2345554

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.82  E-value=0.079  Score=46.14  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      -|+++|.+|+||||+..++....
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            47789999999999999998653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.80  E-value=0.084  Score=50.63  Aligned_cols=27  Identities=15%  Similarity=0.233  Sum_probs=23.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|+.||||||+.+.++...+
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            357899999999999999999987654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=91.76  E-value=0.086  Score=52.17  Aligned_cols=49  Identities=12%  Similarity=0.207  Sum_probs=33.6

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcC---CcEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +...+.+++|-  +++++..|..++..+.+.   ...+++++.-+ +++. +...|
T Consensus       154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~-~~aDr  208 (359)
T 3fvq_A          154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL-QYADR  208 (359)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HHCSE
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HHCCE
Confidence            56778999995  889999998876655442   25778787655 4443 45555

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=91.76  E-value=0.085  Score=45.64  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4788999999999999999854

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.75  E-value=0.085  Score=45.54  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3788999999999999999754

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=91.70  E-value=0.083  Score=50.14  Aligned_cols=22  Identities=32%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      ++++|+||+||||+|+.+++.+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHh
Confidence            8999999999999999998874

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=91.69  E-value=0.091  Score=50.73  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=22.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ...+++++|.|||||||+|..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=91.69  E-value=0.099  Score=45.52  Aligned_cols=23  Identities=30%  Similarity=0.255  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~  291 (435)
                      |+++|.||+||||+.+.+.....
T Consensus        17 i~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           17 IVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhcc
Confidence            78999999999999987765543

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=91.69  E-value=0.089  Score=51.30  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..++++|+||+||||+|+.+++.+.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999987653

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=91.65  E-value=0.095  Score=49.66  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .-+++.|+||+|||++|..++...+
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4689999999999999999998654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=91.65  E-value=0.12  Score=51.63  Aligned_cols=65  Identities=14%  Similarity=0.162  Sum_probs=41.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ..++|+++|++|   +|+.++|.+.+|+. +.. .+    +..+ .|..  .+|.|..             ...++..++
T Consensus       231 ~~r~iVlsGPsg---~tl~~~L~~~~p~~-~~~-~t----r~pR-~gE~dG~~Y~Fv~-------------~~~V~~~~~  287 (391)
T 3tsz_A          231 FLRPVTIFGPIA---DVAREKLAREEPDI-YQI-AK----SEPR-DAGTDQRSSGIIR-------------LHTIKQIID  287 (391)
T ss_dssp             SCCCEEEESTTH---HHHHHHHHHHCTTT-EEE-CC----CCCC-CSSSCCC--CCCC-------------HHHHHHHHT
T ss_pred             CCCEEEEECCCH---HHHHHHHHhhCccc-ccc-cc----CCCC-CcccCCccCCcCc-------------HHHHHHHHH
Confidence            568899999998   89999999998864 332 21    1122 2321  1333431             124555668


Q ss_pred             CCCeEEEeCC
Q 013831          343 TPRNFIIDQT  352 (435)
Q Consensus       343 ~g~~vIlD~T  352 (435)
                      +|+++|||-.
T Consensus       288 ~Gk~~iLdId  297 (391)
T 3tsz_A          288 QDKHALLDVT  297 (391)
T ss_dssp             TTCEEEECCC
T ss_pred             cCCEEEEEeC
Confidence            9999999984

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.64  E-value=0.087  Score=46.45  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4788999999999999999754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=91.61  E-value=0.11  Score=47.90  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=25.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEe
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILL  298 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~l  298 (435)
                      ..+++++|.|||||||.+.+++.+..  +..+.++
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            57999999999999999888776542  2335555

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.60  E-value=0.11  Score=45.49  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      -=|+++|.+|+||||+..++...
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            34788999999999999999854

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=91.59  E-value=0.072  Score=55.11  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=21.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      =++++|+||+|||++|+.++....
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             eeEeecCchHHHHHHHHHHHHHHh
Confidence            478999999999999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.58  E-value=0.089  Score=45.41  Aligned_cols=23  Identities=17%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .-|+++|.+|+||||+..++...
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            34789999999999999999843

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.57  E-value=0.1  Score=51.81  Aligned_cols=49  Identities=12%  Similarity=0.274  Sum_probs=33.1

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +...+.+|+|-  +++++..+..+++.+.+..   ..+++++.-+ ++ ..+...|
T Consensus       179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~-~~~~aDr  233 (366)
T 3tui_C          179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDC  233 (366)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH-HHHHCSE
T ss_pred             hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCE
Confidence            45677899995  7899999998888877542   4677666443 44 3444444

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=91.52  E-value=0.15  Score=52.25  Aligned_cols=66  Identities=14%  Similarity=0.121  Sum_probs=40.7

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNYSERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ...++|||+|++|+|   +.++|.+.+|+. +.. ++-  |  .+ .|..  ..|.|+.             ...++..+
T Consensus       222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~-f~s-~~T--R--pR-~gE~dG~~Y~FTs-------------~~~V~~vl  278 (468)
T 3shw_A          222 GFLRPVTIFGPIADV---AREKLAREEPDI-YQI-AKS--E--PR-DAGTDQRSSGIIR-------------LHTIKQII  278 (468)
T ss_dssp             SSCCCEEEESTTHHH---HHHHHHHHCTTT-EEE-CCC--B--C-----------CBCC-------------HHHHHHHH
T ss_pred             CCCCEEEEECCCHHH---HHHHHHHhCCCc-eee-ecC--C--CC-CcccccccCCccc-------------HHHHHHHH
Confidence            356899999999999   999999998864 333 221  1  11 2221  2344432             12445556


Q ss_pred             cCCCeEEEeCC
Q 013831          342 RTPRNFIIDQT  352 (435)
Q Consensus       342 ~~g~~vIlD~T  352 (435)
                      ++|+++|||-.
T Consensus       279 ~~Gk~~iLdId  289 (468)
T 3shw_A          279 DQDKHALLDVT  289 (468)
T ss_dssp             TTTCEEEECCC
T ss_pred             HCCCeEEEEeC
Confidence            89999999984

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.50  E-value=0.092  Score=46.03  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =|+++|.+|+||||+..++....
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37889999999999999987653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.47  E-value=0.094  Score=45.71  Aligned_cols=22  Identities=18%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      -|+++|.+|+||||+..++...
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999865

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.45  E-value=0.095  Score=45.79  Aligned_cols=22  Identities=23%  Similarity=0.581  Sum_probs=19.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4788999999999999999864

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=91.44  E-value=0.061  Score=52.32  Aligned_cols=26  Identities=8%  Similarity=0.097  Sum_probs=22.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+..+++.|+||+|||+.++.+++++
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            35678999999999999999998776

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=91.40  E-value=0.089  Score=51.97  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=27.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~  300 (435)
                      ...++++.|.||+||||+|..++...  .+..++.+++
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            35799999999999999999887542  1223666766

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=91.37  E-value=0.092  Score=46.38  Aligned_cols=23  Identities=22%  Similarity=0.544  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =|+++|.+|+||||+..++....
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.36  E-value=0.098  Score=45.71  Aligned_cols=23  Identities=17%  Similarity=0.432  Sum_probs=20.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =|+++|.+|+||||+..++....
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            37899999999999999998643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.35  E-value=0.1  Score=52.08  Aligned_cols=49  Identities=10%  Similarity=0.160  Sum_probs=35.4

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +...+.+|+|-  +++++..|..+++.+.+..   ..++|++.-+ +++. +...|
T Consensus       149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~-~~aDr  203 (381)
T 3rlf_A          149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM-TLADK  203 (381)
T ss_dssp             HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHH-HHCSE
T ss_pred             HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-HhCCE
Confidence            56788999996  8899999998887777642   4678888655 5543 44455

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.34  E-value=0.1  Score=45.73  Aligned_cols=22  Identities=23%  Similarity=0.597  Sum_probs=20.0

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+++|.+|+||||+..++....
T Consensus        26 i~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            7899999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.32  E-value=0.11  Score=45.46  Aligned_cols=24  Identities=33%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..-|+++|.+|+||||+..++...
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            445889999999999999999754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.31  E-value=0.1  Score=45.64  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999999754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.31  E-value=0.099  Score=46.19  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      --|+++|.+|+||||+..++....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            347889999999999999998653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=91.30  E-value=0.099  Score=46.02  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      -|+++|.||+||||+.+++...
T Consensus        25 ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.29  E-value=0.098  Score=45.94  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =|+++|.+|+||||+..++....
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            37889999999999999998643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=91.26  E-value=0.1  Score=51.56  Aligned_cols=50  Identities=14%  Similarity=0.220  Sum_probs=34.3

Q ss_pred             HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .+...+.+++|-  +++++..|..+++.+.+..   ..+++++.-+ +++ .+...|
T Consensus       148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~-~~~adr  203 (359)
T 2yyz_A          148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA-MTMASR  203 (359)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH-HHHCSE
T ss_pred             HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCE
Confidence            356778999996  7899999998887776642   4667766444 444 344444

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.25  E-value=0.15  Score=48.89  Aligned_cols=31  Identities=19%  Similarity=0.532  Sum_probs=26.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .++++.|++|+||||+++.+++..+   ++.++.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~   62 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERP---GILIDC   62 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSS---EEEEEH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcC---cEEEEe
Confidence            6899999999999999999998864   555543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.23  E-value=0.1  Score=45.50  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      --|+++|.+|+||||+..++...
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            45789999999999999999854

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.23  E-value=0.1  Score=45.66  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4788999999999999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.23  E-value=0.1  Score=45.93  Aligned_cols=22  Identities=14%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3788999999999999999865

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.22  E-value=0.1  Score=46.23  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=20.2

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      =|+++|.+|+||||+..++....
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47889999999999999998653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.21  E-value=0.077  Score=45.84  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=19.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~  288 (435)
                      .--|+++|.+|+||||+..++..
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34578999999999999999874

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.21  E-value=0.1  Score=44.84  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+++|.+|+||||+..++....
T Consensus        11 i~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           11 CVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6789999999999999998653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.20  E-value=0.089  Score=45.71  Aligned_cols=24  Identities=33%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      --|+++|.||+||||+..++....
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            447889999999999999998543

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=91.13  E-value=0.11  Score=49.94  Aligned_cols=32  Identities=16%  Similarity=0.213  Sum_probs=24.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCC--ccEEEec
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLG  299 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls  299 (435)
                      -++++|.||+|||++|+.++...+.  ..++.++
T Consensus        27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~   60 (304)
T 1ojl_A           27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLN   60 (304)
T ss_dssp             CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred             cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence            4788999999999999999986531  2355554

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=91.11  E-value=0.11  Score=51.45  Aligned_cols=49  Identities=14%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +.+.+.+++|-  +++++..|..+++.+.+..   ..+++++.-+ +++ .+...|
T Consensus       149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr  203 (362)
T 2it1_A          149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA-LAMADR  203 (362)
T ss_dssp             TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSE
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH-HHhCCE
Confidence            56778999996  7899999998887776642   4667766444 444 344444

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.03  E-value=0.084  Score=45.43  Aligned_cols=21  Identities=19%  Similarity=0.433  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+..++...
T Consensus        10 i~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A           10 LGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999865

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=91.01  E-value=0.1  Score=45.45  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      --|+++|.||+||||+..++...
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45789999999999999999865

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.98  E-value=0.14  Score=44.91  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            4789999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=90.97  E-value=0.1  Score=54.20  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=20.0

Q ss_pred             cceEEEEEccCCCChhHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKW  286 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l  286 (435)
                      ..+++.++|.|||||||+++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            4689999999999999999994

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.97  E-value=0.11  Score=49.40  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=20.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++.|+||+||||+|+.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8899999999999999998764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.94  E-value=0.11  Score=45.87  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      -=|+++|.+|+||||+..++....
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            447889999999999999998653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=90.94  E-value=0.11  Score=51.23  Aligned_cols=49  Identities=12%  Similarity=0.274  Sum_probs=34.4

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +.+.+.+++|-  +++++..|..+++.+.+..   ..+++++.-+ +++ .+...|
T Consensus       161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr  215 (355)
T 1z47_A          161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA-LEVADR  215 (355)
T ss_dssp             TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH-HHHCSE
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCE
Confidence            56778999996  8899999998887776542   4677777554 444 344444

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.89  E-value=0.11  Score=46.35  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999854

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.88  E-value=0.12  Score=45.42  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=90.87  E-value=0.12  Score=49.68  Aligned_cols=25  Identities=12%  Similarity=0.240  Sum_probs=22.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.+. ...
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            4688999999999999999998 653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.84  E-value=0.11  Score=45.95  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999999754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=90.82  E-value=0.11  Score=51.42  Aligned_cols=26  Identities=12%  Similarity=0.219  Sum_probs=22.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|+||+||||+.+.++....
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccc
Confidence            46889999999999999999986553

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=90.82  E-value=0.12  Score=46.39  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=90.80  E-value=0.12  Score=51.31  Aligned_cols=50  Identities=12%  Similarity=0.152  Sum_probs=34.3

Q ss_pred             HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .+.+.+.+++|-  +++++..|..+++.+.+..   ..+++++.-+ +++. +...|
T Consensus       156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~-~~adr  211 (372)
T 1v43_A          156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM-TMGDR  211 (372)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH-HHCSE
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCE
Confidence            356778999996  7899999998888777642   4677776444 4443 44444

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.79  E-value=0.1  Score=46.24  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=18.7

Q ss_pred             EEEEEccCCCChhHHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~  288 (435)
                      -|+++|.||+||||+.+++..
T Consensus        27 ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            368999999999999999974

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.76  E-value=0.11  Score=53.94  Aligned_cols=33  Identities=27%  Similarity=0.224  Sum_probs=25.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEe
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL  298 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~l  298 (435)
                      .+.++++|++||||||+.+.++...+. .+.+.+
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti  293 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI  293 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence            456899999999999999999887653 334443

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=90.73  E-value=1.2  Score=42.49  Aligned_cols=108  Identities=10%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g  344 (435)
                      .+.||++-|.-||||++.++.+...+....+.+++..          .+.     .  +   +.....+.+.....-..|
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~----------~Pt-----~--e---E~~~~ylwR~~~~lP~~G  133 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK----------APT-----D--E---EKSHDFLWRIEKQVPAAG  133 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC----------SCC-----H--H---HHTSCTTHHHHTTCCCTT
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC----------CCC-----h--h---hhcCCHHHHHHHhCCCCC
Confidence            4678999999999999999999998875555444321          000     0  0   000011112333445789


Q ss_pred             CeEEEeCCCcCHH------------HHHHHHHHHhcC------CcEEE--EEECCh-HHHHHHHHHhhh
Q 013831          345 RNFIIDQTNVFKS------------ARKRKLRLFVNF------RKIAV--VVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       345 ~~vIlD~Tn~~~~------------~R~~~~~~~~~~------~~~~v--v~l~~~-ee~~~R~~~R~~  392 (435)
                      ..+|+|.+.+..-            ...+.++.+..|      ..+.+  ++++.+ ++..+|.++|..
T Consensus       134 ~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~  202 (289)
T 3rhf_A          134 MVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLD  202 (289)
T ss_dssp             CEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             eEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence            9999998765442            222223333322      12332  577776 888999999854

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=90.71  E-value=0.095  Score=46.46  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWV  287 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~  287 (435)
                      --|+++|.||+||||+..++.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            357899999999999999995

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=90.70  E-value=0.12  Score=54.64  Aligned_cols=25  Identities=20%  Similarity=0.480  Sum_probs=22.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +.++++|+||+||||+|+.++..++
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            5789999999999999999998775

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.67  E-value=0.11  Score=45.97  Aligned_cols=22  Identities=14%  Similarity=0.533  Sum_probs=18.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3788999999999999999754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=90.65  E-value=0.12  Score=45.84  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            4788999999999999999764

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=90.61  E-value=0.69  Score=47.68  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=64.7

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC-ccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~ll~~al~  342 (435)
                      ..+.||++-|.-||||+|.++.+...+....+.+++..       -++. .....|-              .+.....-.
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~-------~Pt~~E~~~~yl--------------~R~~~~lP~  356 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA-------APTEEERAQPYL--------------WRFWRHIPA  356 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC-------SCCHHHHTSCTT--------------HHHHTTCCC
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC-------CCChhhhcchHH--------------HHHHHhCCC
Confidence            35788999999999999999999998875544443211       0000 0001111              112333456


Q ss_pred             CCCeEEEeCCCcCH------------HHHHHHHHHHhcC-------C-cEEEEEECCh-HHHHHHHHHhhh
Q 013831          343 TPRNFIIDQTNVFK------------SARKRKLRLFVNF-------R-KIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       343 ~g~~vIlD~Tn~~~------------~~R~~~~~~~~~~-------~-~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      .|..+|+|-+.+..            ....+.++.+..|       + .+..++++.+ ++..+|...|..
T Consensus       357 ~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~  427 (500)
T 3czp_A          357 RRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREK  427 (500)
T ss_dssp             TTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence            89999999875543            2222223332222       2 3444677876 899999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.58  E-value=0.12  Score=52.21  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             ceE--EEEEccCCCChhHHHHHHHhh
Q 013831          266 CEV--MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~l--iim~GlPGSGKST~A~~l~~~  289 (435)
                      .++  +.++|.+||||||+.+.++..
T Consensus        40 Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           40 GFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            467  899999999999999999764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=90.56  E-value=0.12  Score=47.38  Aligned_cols=24  Identities=17%  Similarity=0.291  Sum_probs=20.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .-|+++|.+|+||||+...+....
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCC
Confidence            457899999999999999998653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.54  E-value=0.13  Score=45.69  Aligned_cols=23  Identities=22%  Similarity=0.474  Sum_probs=19.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      --|+++|.||+||||+..++...
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            34789999999999999999854

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.48  E-value=0.084  Score=45.67  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=8.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4788999999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.47  E-value=0.13  Score=51.35  Aligned_cols=41  Identities=7%  Similarity=0.066  Sum_probs=29.8

Q ss_pred             HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC-cEEEEEECCh
Q 013831          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPKP  380 (435)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~  380 (435)
                      .+...+.+++|-  +++++..|..+++.+.... ..+++++.-+
T Consensus       170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd  213 (390)
T 3gd7_A          170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR  213 (390)
T ss_dssp             HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSS
T ss_pred             HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence            356778899996  7889999998887777643 4566666543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=90.47  E-value=0.13  Score=45.30  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=18.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4788999999999999999754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.45  E-value=0.13  Score=51.07  Aligned_cols=50  Identities=16%  Similarity=0.282  Sum_probs=34.3

Q ss_pred             HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .+.+.+.+++|-  +++++..|..+++.+.+..   ..++|++.-+ +++ .+...|
T Consensus       154 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr  209 (372)
T 1g29_1          154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDR  209 (372)
T ss_dssp             HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSE
T ss_pred             HhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCE
Confidence            356788999996  7899999998887776542   4667666444 444 344444

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.44  E-value=0.13  Score=45.76  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4788999999999999999864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=90.41  E-value=0.13  Score=45.79  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .-|+++|.+|+||||+..++...
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            34788999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.37  E-value=0.13  Score=45.92  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3788999999999999999864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.36  E-value=0.13  Score=45.69  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=19.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      -=|+++|.+|+||||+..++...
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            34789999999999999999854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=90.33  E-value=0.12  Score=49.53  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=22.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+.+.++....
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHhccccc
Confidence            46889999999999999999986543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=90.32  E-value=0.11  Score=45.33  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      --|+++|.+|+||||+..++....
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            347899999999999999997553

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.25  E-value=0.13  Score=45.14  Aligned_cols=21  Identities=29%  Similarity=0.640  Sum_probs=18.4

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus        29 i~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            788999999999999999754

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=90.16  E-value=0.1  Score=51.46  Aligned_cols=49  Identities=10%  Similarity=0.277  Sum_probs=33.8

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +...+.+++|-  +++++..|..+++.+++..   ..+++++.-+ +++. +...|
T Consensus       143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~-~~adr  197 (348)
T 3d31_A          143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR-IMADR  197 (348)
T ss_dssp             TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHCSE
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCE
Confidence            56778999996  8899999998888776542   4667666444 4443 44444

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=90.14  E-value=0.18  Score=52.66  Aligned_cols=52  Identities=13%  Similarity=0.025  Sum_probs=35.2

Q ss_pred             HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHh
Q 013831          339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKR  390 (435)
Q Consensus       339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~R  390 (435)
                      +.+...+.+|+|-  +++++..+.++++.+.... ..+++++.-+-+...+...|
T Consensus       152 aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~  206 (538)
T 3ozx_A          152 SLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDL  206 (538)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSE
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCE
Confidence            3356788999994  7899999988888777643 56777775542233444444

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=90.12  E-value=0.13  Score=50.97  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=18.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~  288 (435)
                      .=|++.|.+||||||+++++.-
T Consensus        34 ~killlG~~~SGKST~~kq~~i   55 (362)
T 1zcb_A           34 VKILLLGAGESGKSTFLKQMRI   55 (362)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            3468899999999999999853

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.11  E-value=0.14  Score=45.17  Aligned_cols=22  Identities=45%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.10  E-value=0.15  Score=44.65  Aligned_cols=22  Identities=32%  Similarity=0.367  Sum_probs=19.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999999865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=90.04  E-value=0.19  Score=42.95  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=19.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~  288 (435)
                      +.+.+++|+.||||||+...+.-
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999888753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.01  E-value=0.15  Score=45.14  Aligned_cols=22  Identities=36%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3788999999999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=89.95  E-value=0.15  Score=45.33  Aligned_cols=22  Identities=27%  Similarity=0.225  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.||+||||+..++...
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999854

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=89.94  E-value=0.15  Score=45.76  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4788999999999999999753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=89.90  E-value=0.15  Score=44.92  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+|+|.||+||||+..++...
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999853

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=89.88  E-value=0.13  Score=52.54  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=22.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      ..+++.++|++||||||+++.++...
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            35788999999999999999997654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=89.85  E-value=0.14  Score=46.46  Aligned_cols=24  Identities=17%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..-|+++|.+|+||||+..++...
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345789999999999999999764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=89.84  E-value=0.15  Score=50.37  Aligned_cols=25  Identities=36%  Similarity=0.254  Sum_probs=21.8

Q ss_pred             ceEEEE--EccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMM--VGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim--~GlPGSGKST~A~~l~~~~  290 (435)
                      +.++++  +|+||+||||+++.+++..
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            567888  9999999999999998764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=89.51  E-value=0.097  Score=51.67  Aligned_cols=50  Identities=16%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .+...+.+++|-  +++++..|..+++.+.+..   ..+++++.-+ +++. +...|
T Consensus       155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~-~~adr  210 (353)
T 1oxx_K          155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF-AIADR  210 (353)
T ss_dssp             HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHH-HHCSE
T ss_pred             HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCE
Confidence            356778999996  7888888888777776542   4567666443 4443 44444

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=89.49  E-value=0.18  Score=48.33  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=25.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      .++++.|++|+||||+++.+++..... ++.++
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~-~~~~~   62 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLP-YIYLD   62 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCC-EEEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCC-EEEEE
Confidence            489999999999999999998875432 44443

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=89.48  E-value=0.16  Score=50.26  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=27.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ..++++.|.||+||||+|..++...  .+..++.++++
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            5688999999999999999887542  12236667664

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=89.45  E-value=0.17  Score=47.41  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      -|+++|.||+||||+..++...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999865

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=89.37  E-value=0.18  Score=45.33  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus        30 i~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           30 LVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            788999999999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=89.31  E-value=0.19  Score=48.18  Aligned_cols=25  Identities=32%  Similarity=0.578  Sum_probs=21.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .+..|.++|.||+||||+..++...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3567999999999999999999864

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=89.30  E-value=0.2  Score=51.01  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=28.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ...++++.|.||+||||||..++...  .+..+..+|.+
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            35899999999999999998887542  13346677664

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=89.22  E-value=0.19  Score=44.28  Aligned_cols=21  Identities=24%  Similarity=0.476  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+.+.+...
T Consensus        23 i~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           23 ILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             EEEEESTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            788999999999999987764

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=89.20  E-value=0.18  Score=48.76  Aligned_cols=32  Identities=16%  Similarity=0.334  Sum_probs=24.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ..-++++|.+|+||||+|-.+.+.-    +..++-|
T Consensus       147 g~gvli~G~sG~GKStlal~l~~~G----~~lv~DD  178 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLINKN----HLFVGDD  178 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT----CEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC----CEEEeCC
Confidence            3578999999999999999987642    3455544

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=89.16  E-value=0.18  Score=46.76  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..-|+++|.||+||||+..++...
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            345788999999999999999854

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=89.07  E-value=0.37  Score=48.95  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ...++.++.|.|||||||+..+++..
T Consensus       159 ~~~~v~~I~G~aGsGKTt~I~~~~~~  184 (446)
T 3vkw_A          159 SSAKVVLVDGVPGCGKTKEILSRVNF  184 (446)
T ss_dssp             CCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred             ccccEEEEEcCCCCCHHHHHHHHhcc
Confidence            35789999999999999999988764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=89.05  E-value=0.15  Score=44.44  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=18.7

Q ss_pred             EEEEEccCCCChhHHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~  288 (435)
                      =|+++|.+|+||||+..++..
T Consensus        24 ~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999964

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=89.03  E-value=0.2  Score=48.73  Aligned_cols=26  Identities=12%  Similarity=0.183  Sum_probs=22.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..+++.|+||+||||+|+.+++.+.
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHh
Confidence            46789999999999999999988653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=88.99  E-value=0.18  Score=48.45  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+.+.++..
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            488999999999999998653

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=88.93  E-value=0.2  Score=52.26  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      ...+|.++|++|.||||+|+.++.
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Confidence            468999999999999999998863

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=88.91  E-value=0.2  Score=45.17  Aligned_cols=22  Identities=18%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3789999999999999999864

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=88.90  E-value=0.27  Score=49.16  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      .....+.++|+||+||||+.+.+..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3456789999999999999999987

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=88.83  E-value=0.19  Score=52.09  Aligned_cols=25  Identities=20%  Similarity=0.486  Sum_probs=22.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..+++++.|+|||||||+++.++..
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~  304 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVEN  304 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            4679999999999999999998754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=88.74  E-value=0.16  Score=58.77  Aligned_cols=110  Identities=11%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec--------cHHHHHHhcc-C-------CCccCC-CCh---H--HH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG--------TNLILEQMKV-P-------GLLRKH-NYS---E--RF  322 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls--------~D~ir~~~~~-~-------G~~~~~-~~~---~--~~  322 (435)
                      .+.|-+||.+||||||+++.+.+-+. ..+-+.|+        .+.+|+++.+ +       |..+++ .|.   +  .-
T Consensus      1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd 1184 (1321)
T 4f4c_A         1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM 1184 (1321)
T ss_dssp             TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCH
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCH
Confidence            46788999999999999999988653 22334442        3456665542 1       211211 010   0  01


Q ss_pred             HHHHHHHHH-HHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831          323 QCLMGRANA-IFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVN-FRKIAVVVF  377 (435)
Q Consensus       323 ~~~~~~~~~-~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~-~~~~~vv~l  377 (435)
                      +++.+.++. .+.+.+ ..+..|.+..|..  .|++..+|++ +..++. +++-.++.+
T Consensus      1185 ~ei~~Al~~a~l~~~I-~~Lp~GldT~vge~G~~LSgGQrQr-iaiARAllr~~~ILiL 1241 (1321)
T 4f4c_A         1185 AQVEEAARLANIHNFI-AELPEGFETRVGDRGTQLSGGQKQR-IAIARALVRNPKILLL 1241 (1321)
T ss_dssp             HHHHHHHHHTTCHHHH-HTSTTTTCSEETTTSCSSCHHHHHH-HHHHHHHHSCCSEEEE
T ss_pred             HHHHHHHHHhCChHHH-HcCcCCCCCEecCCCcccCHHHHHH-HHHHHHHHhCCCEEEE
Confidence            223332221 122333 2345777777753  7899998886 666665 333445555

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=88.70  E-value=0.21  Score=52.52  Aligned_cols=26  Identities=27%  Similarity=0.256  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+++.++...+
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhccC
Confidence            57899999999999999999987654

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=88.66  E-value=0.12  Score=54.66  Aligned_cols=24  Identities=17%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      =++|+|+||+|||++|+.+++..+
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~  352 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAP  352 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred             ceEEECCCchHHHHHHHHHHHhCC
Confidence            378999999999999999998876

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=88.51  E-value=0.24  Score=49.86  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..++.++|.+||||||+.+.+...
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCC
Confidence            348999999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=88.49  E-value=0.23  Score=51.74  Aligned_cols=52  Identities=12%  Similarity=0.032  Sum_probs=35.4

Q ss_pred             HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 013831          339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR  390 (435)
Q Consensus       339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R  390 (435)
                      ..+.....+|+|-  +++++..+.+.++.+..+.  ..++|++.-+-....+...|
T Consensus       172 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dr  227 (538)
T 1yqt_A          172 ALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDI  227 (538)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred             HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            3357788999994  7899999988877776542  56777776542334444444

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=88.45  E-value=0.22  Score=52.33  Aligned_cols=26  Identities=27%  Similarity=0.334  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+++.++|++||||||+++.++..++
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999987653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=88.30  E-value=0.23  Score=52.41  Aligned_cols=27  Identities=26%  Similarity=0.244  Sum_probs=23.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+++.++..++
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            368899999999999999999987664

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=88.27  E-value=0.11  Score=45.72  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=3.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|+++|.+|+||||+..++...
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4788999999999999998765

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=88.26  E-value=0.26  Score=53.42  Aligned_cols=33  Identities=15%  Similarity=0.182  Sum_probs=26.7

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      -++++|+||+|||++|+.++..++ ..++.++..
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~-~~~~~i~~s  522 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMS  522 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-CEEEEEEGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhc-CCEEEEech
Confidence            589999999999999999998875 346666543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=88.25  E-value=0.093  Score=50.77  Aligned_cols=25  Identities=12%  Similarity=0.194  Sum_probs=21.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+++.++|+||+||||+.+.+....
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccc
Confidence            4689999999999999999997543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=88.24  E-value=0.24  Score=44.90  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=19.0

Q ss_pred             EEEEEccCCCChhHHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~  288 (435)
                      =|+|+|.||+||||+..++..
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999999974

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=88.21  E-value=1.4  Score=47.54  Aligned_cols=25  Identities=12%  Similarity=0.337  Sum_probs=20.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ..++|+++|+   ||+|+.++|.+.++.
T Consensus       530 ~~r~vvl~GP---~K~tl~~~L~~~~~~  554 (721)
T 2xkx_A          530 YARPIIILGP---TKDRANDDLLSEFPD  554 (721)
T ss_pred             CCCEEEEECC---CHHHHHHHHHHhCcc
Confidence            3578999998   499999999988763

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=88.19  E-value=0.22  Score=46.87  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=18.0

Q ss_pred             EEEEccCCCChhHHHHHHHh
Q 013831          269 MMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~  288 (435)
                      |+++|.||+||||+...+..
T Consensus        11 I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A           11 LMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEECTTSSHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=88.19  E-value=0.28  Score=47.07  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +-.|+++|.||+||||+..++...
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999864

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=87.96  E-value=0.27  Score=47.64  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=21.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..-++++|.+|+||||+|..+.+.
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            367899999999999999999886

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=87.90  E-value=1  Score=45.38  Aligned_cols=22  Identities=32%  Similarity=0.518  Sum_probs=19.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      .|+++|.|++||||+..++...
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999764

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=87.86  E-value=0.31  Score=50.75  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=22.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      ...+|.++|++|.||||+|+.++.
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999999999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=87.86  E-value=0.25  Score=51.58  Aligned_cols=52  Identities=12%  Similarity=0.141  Sum_probs=35.7

Q ss_pred             HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcC---CcEEEEEECChHHHHHHHHHh
Q 013831          339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVFPKPEDLKIRSVKR  390 (435)
Q Consensus       339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~~ee~~~R~~~R  390 (435)
                      +.+.....+|+|-  ++++...|..+++.+.+.   ...+++++.-+-+...+...|
T Consensus       399 aL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDr  455 (538)
T 3ozx_A          399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR  455 (538)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred             HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            3357788999995  788999998888877654   246777776553334455555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	435
d2fnja1	217	b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi	3e-18
d2afja1	213	b.29.1.22 (A:12-224) SPRY domain-containing SOCS b	2e-15
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	4e-09
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	1e-08
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	0.002
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	0.002

>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 81.0 bits (199), Expect = 3e-18
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 13/151 (8%)

Query: 46  LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP---- 101
            N  D  L+  ++++   +   H+   A      R  VG+  G + +     + Q     
Sbjct: 26  WNSEDRSLNIFVKEDDKLT--FHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHA 83

Query: 102 ---VDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFG 158
              V   D P        +  S  +   G      + +              L   E F 
Sbjct: 84  VVGVCTADAPLHSVGYQSLVGST-EQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFL 142

Query: 159 VGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
           V D  + A+D++     T+ F  + ++LG A
Sbjct: 143 VPDKFLVALDMDEG---TLSFIVDQQYLGIA 170

>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: SPRY domain-containing SOCS box protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.0 bits (178), Expect = 2e-15
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 15/165 (9%)

Query: 32  SSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYC 91
           S+       ++    NP DC  + D+++ GL      +   A    G R   G + G + 
Sbjct: 23  SAPPPDLVAQRHHGWNPKDCSENIDVKEGGLC---FERRPVAQSTDGVRGKRGYSRGLHA 79

Query: 92  FGCKIVSTQP-------VDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKF 144
           +       Q        V     P    H   +  S  +                  G  
Sbjct: 80  WEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWD--IGRGKLYHQSKGLE 137

Query: 145 SHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
           +        GE+  V + ++  +D+E     T+G++  G +LG A
Sbjct: 138 APQYPAGPQGEQLVVPERLLVVLDMEEG---TLGYSIGGTYLGPA 179

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 52.8 bits (125), Expect = 4e-09
 Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 9/150 (6%)

Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF 322
           MK  ++++ +G P SGK+TWA +++  +P   +  +  +   + +       ++ Y+++ 
Sbjct: 1   MK--KIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQSIMAHEERDEYKYTKKK 56

Query: 323 QCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK--RKLRLFVNFRKIAVVVFPKP 380
           + ++          +     + +  II  TN+    R           ++    V     
Sbjct: 57  EGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPW 116

Query: 381 EDLKIRSVKRFKEMGKEVPADAVNNMLANY 410
            +L  R+ KR     K VP D + +M  + 
Sbjct: 117 TELVKRNSKRG---TKAVPIDVLRSMYKSM 143

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.2 bits (124), Expect = 1e-08
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 37/167 (22%)

Query: 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQC 324
           + EV++ VG P +GK+T+ ++ +                           +       +C
Sbjct: 13  NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV------------------NRDTLGSWQRC 54

Query: 325 LMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLF--VNFRKIAVVVFPKPED 382
           +     A+         R  +  +ID TN    +R R ++                  E 
Sbjct: 55  VSSCQAAL---------RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ 105

Query: 383 LKIRSVKR--FKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQ 427
            +  +  R         V    + +    +  P         E F +
Sbjct: 106 ARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPT------LAEGFLE 146

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 23/134 (17%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG 327
             ++ G P SGKT+     + +  +   I++  +   +Q      L K    +  + +  
Sbjct: 34  AFLLGGQPGSGKTSLR-SAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTP 92

Query: 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLR-LFVNFRKIAVVVFPKPEDLKI- 385
            +N + + ++SR S    N +I+ T        +    L     +  + V   P+     
Sbjct: 93  YSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYL 152

Query: 386 RSVKRFKEMGKEVP 399
            +++R++ M  + P
Sbjct: 153 GTIERYETMYADDP 166

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 268 VMMMVGLPASGKTTWAEKWVK 288
           +++MVGLPA GKT  ++K  +
Sbjct: 4   LIVMVGLPARGKTYISKKLTR 24

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	435
d2fnja1	217	LD34464p {Fruit fly (Drosophila melanogaster) [Tax	99.95
d2afja1	213	SPRY domain-containing SOCS box protein 2 {Mouse (	99.94
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.9
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.78
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.44
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.37
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.37
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.29
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.26
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.17
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.15
d2fbea1	188	Similar to Ret finger protein-like 1 {Human (Homo	99.14
d2iwgb1	179	52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96	99.04
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.03
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.88
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.87
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.8
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.77
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.76
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.75
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.72
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.67
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.62
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.61
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.59
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.54
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.53
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.5
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.41
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.4
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.37
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.36
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.36
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.34
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.32
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.31
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.3
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.3
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.28
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.2
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.99
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.95
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.91
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.85
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.76
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.68
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.64
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.61
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.6
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.54
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.48
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.38
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.26
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.16
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.13
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.12
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.06
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.0
d1okkd2	207	GTPase domain of the signal recognition particle r	96.97
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.94
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.86
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.84
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.83
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.74
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.69
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.69
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.56
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.52
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.52
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.51
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.5
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.49
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.45
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.44
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.43
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.37
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.34
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.21
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.19
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.08
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.96
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.9
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.88
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.82
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.32
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.29
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.28
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.23
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.22
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.19
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.14
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.07
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.01
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.99
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.86
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.86
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.86
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.58
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.58
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.5
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.42
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.27
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.23
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.17
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.16
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.1
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.01
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.0
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.88
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.88
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.83
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.78
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.78
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.77
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.74
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.74
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.71
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.7
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.65
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.62
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.53
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.51
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.4
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.39
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.37
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.36
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.35
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.33
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.32
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.27
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.24
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.2
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.17
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.16
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.15
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.13
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.12
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.09
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.03
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.03
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.01
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.0
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.97
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.89
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.87
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.87
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.82
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.8
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.78
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.75
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.7
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.62
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.59
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.59
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.57
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.57
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	92.57
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.55
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.51
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.5
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.36
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.35
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	92.31
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.26
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.19
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.13
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	91.92
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.86
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	91.82
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.79
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.77
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.72
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.69
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.68
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	91.66
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	91.61
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.4
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.39
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	91.33
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.29
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.22
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.22
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.17
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.14
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	90.88
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	90.83
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	90.81
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.71
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.7
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.68
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.57
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	90.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.31
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	90.3
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.26
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	90.12
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	90.1
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.07
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	89.78
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.62
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.61
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.4
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	89.39
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	89.37
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	89.02
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	88.92
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.81
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.32
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	88.02
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	87.97
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	87.86
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	87.67
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.64
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	87.59
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	87.57
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.55
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.09
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.48
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	86.36
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	86.14
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	85.78
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.32
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	84.91
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.57
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	84.39
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	83.63
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	83.08
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	82.98
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	82.4
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	82.06
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	80.39
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	80.13

>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.2e-27  Score=222.13  Aligned_cols=162  Identities=22%  Similarity=0.319  Sum_probs=133.0

Q ss_pred             CCeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 013831           41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS  120 (435)
Q Consensus        41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s  120 (435)
                      +..++||+.|++.++.|++|++.+...  +..+.+|++||++.++.+|+|||||+|....          ....+.|||+
T Consensus        21 ~~~~~wn~~~~~~~~~ls~~~~~~~~~--~~~~~~~~~vrgt~g~ssGk~YWEV~v~~~~----------~~~~~~IGV~   88 (217)
T d2fnja1          21 QLKHSWNSEDRSLNIFVKEDDKLTFHR--HPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQ----------RGTHAVVGVC   88 (217)
T ss_dssp             HHHTSEEEEEECTTEEEETTEEEEEEE--CCCTTEEEEEEESCCBCSSEEEEEEECCGGG----------CTTCCEEEEE
T ss_pred             cccccCChhcCCCCEEEeCCCceEEEe--CCccccCCeEEEcccccCCcEEEEEEEecCC----------CCCeeEEEEE
Confidence            345689999999999999999776432  2346789999999999999999999998642          2356889999


Q ss_pred             cCCCC------CCCCCCCCcceEEec-CCceEeCCCc---------ccCCCCCCCCCEEEEEEecCCCCceeEEEEeCcc
Q 013831          121 RGDDP------VGKLGETEQSFGFGG-TGKFSHGGNF---------LNFGEKFGVGDTIICAIDLESKPLATIGFAKNGK  184 (435)
Q Consensus       121 ~~~~~------~~~lG~d~~S~gy~~-~G~~~~~~~~---------~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~  184 (435)
                      +...+      ...+|.+.+||+|.. +|.++|++..         ..||++|..||||||+||+++   ++|+|+|||+
T Consensus        89 ~~~~~~~~~~~~~~~G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGV~LD~d~---gtLsF~kNG~  165 (217)
T d2fnja1          89 TADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDE---GTLSFIVDQQ  165 (217)
T ss_dssp             CTTSCSEEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTCCTTCCCCCCSEEEEEEETTT---TEEEEEETTE
T ss_pred             ecccCcccCCccccccCCCCcceEecCCCEEEecCCCccccccCcccccCCccCCCCEEEEEEeCCC---CEEEEEECCE
Confidence            87643      346999999999975 6778887643         357899999999999999999   8999999999


Q ss_pred             ceeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEccCCC
Q 013831          185 WLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQ  234 (435)
Q Consensus       185 ~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nFG~~~  234 (435)
                      +||+||+   ++              ....|||+|+..  +++|.++|....
T Consensus       166 ~lGvAf~---~l--------------~~~~lyP~vs~~~~~~~v~~~~~~~~  200 (217)
T d2fnja1         166 YLGIAFR---GL--------------RGKKLYPIVSAVWGHCEITMRYIGGL  200 (217)
T ss_dssp             EEEEEEC---CC--------------TTCCBEEEEEECCTTCEEEEEEEEEE
T ss_pred             EeeEEEe---CC--------------CCCeEEEEEEeccCCcEEEEEEcCCc
Confidence            9999996   21              245899999986  789999997653

>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: SPRY domain-containing SOCS box protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.8e-27  Score=220.15  Aligned_cols=160  Identities=23%  Similarity=0.358  Sum_probs=128.3

Q ss_pred             CCCeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 013831           40 QKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT  119 (435)
Q Consensus        40 ~~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~  119 (435)
                      ....+.|||.|++.++.|++++|+++..   +.+.+|.+||++.++.+|||||||+|....          ....++|||
T Consensus        31 ~~~~~~wnp~~~~~~i~ls~g~l~~~~~---~~~~~~~~v~gt~~~ssGk~YwEv~i~~~~----------~~~~~~iGv   97 (213)
T d2afja1          31 AQRHHGWNPKDCSENIDVKEGGLCFERR---PVAQSTDGVRGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGV   97 (213)
T ss_dssp             HHHHHSSCCSSSCCSSEEETTTTEEECS---SCTTTSSSEEECCCCCCSEEEEEEECCCCS----------SSCCCEEEE
T ss_pred             ccccccCChhhcCCCeEEeCCCeEEEeC---CccCccccEEECccccCCcEEEEEEEeccC----------CcceEEEeE
Confidence            3455669999999999999999998753   235789999999999999999999997542          245789999


Q ss_pred             ecCCCC------CCCCCCCCcceEEec-CCceEeCC--------CcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCcc
Q 013831          120 SRGDDP------VGKLGETEQSFGFGG-TGKFSHGG--------NFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGK  184 (435)
Q Consensus       120 s~~~~~------~~~lG~d~~S~gy~~-~G~~~~~~--------~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~  184 (435)
                      ++.+.+      ...+|++.+||+|.. .|.+++.+        ....||..|..||||||+||+++   ++|+|+|||+
T Consensus        98 ~~~~~~~~~~~~~~~~G~~~~s~g~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGvaLD~d~---g~i~F~kNG~  174 (213)
T d2afja1          98 ATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEE---GTLGYSIGGT  174 (213)
T ss_dssp             EESSCCCSSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTT---TEEEEESTTC
T ss_pred             eecccCccccCcccccccccCCcccccccceEeecccccccCCcCcCccCcccCCCCEEEEEEeCCC---CEEEEEECCE
Confidence            876542      245899999999964 45554433        23478899999999999999999   8999999999


Q ss_pred             ceeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEccC
Q 013831          185 WLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSV  232 (435)
Q Consensus       185 ~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nFG~  232 (435)
                      +||+||+.-                 ....|||+|+..  +++|.++|=.
T Consensus       175 ~lG~af~~l-----------------~~~~lyP~vs~~~g~~~~~~~~~~  207 (213)
T d2afja1         175 YLGPAFRGL-----------------KGRTLYPSVSAVWGQCQVRIRYMG  207 (213)
T ss_dssp             SCSTTHHHH-----------------HHHCCEEEEEECCTTSCCEEEEES
T ss_pred             EeeeeEECC-----------------CCCeEEEEEEEecCCcEEEEEECc
Confidence            999999721                 135799999974  8888887633

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1e-23  Score=188.31  Aligned_cols=136  Identities=18%  Similarity=0.163  Sum_probs=111.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      +.+.||||+|+|||||||||++++..++   +.+||.|.++..                ..+.        ..++.++++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~---~~~i~~D~~~~~----------------~~~~--------~~~~~~l~~   64 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTLGSW----------------QRCV--------SSCQAALRQ   64 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGT---CEEEEHHHHCSH----------------HHHH--------HHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcC---CEEEchHHHHHH----------------HHHH--------HHHHHHHHC
Confidence            3589999999999999999999998876   788998875311                1121        244456789


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhc--CCCCcHHHHHHHHhcccCCCCCCCC
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEM--GKEVPADAVNNMLANYVLPVNKDTP  419 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~--~~~vp~~vi~~m~~~fe~P~~~~~~  419 (435)
                      |++||+|+||.++++|.++++.++.++ .+.+|++.+| ++|++||..|....  ...+|+.++..|.++|++|+.    
T Consensus        65 g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~~~fe~P~~----  140 (172)
T d1yj5a2          65 GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTL----  140 (172)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCG----
T ss_pred             CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHHHhCCCCCc----
Confidence            999999999999999999888887766 7888999887 89999999996543  346899999999999999986    


Q ss_pred             CCCcccceecccc
Q 013831          420 GSDELFDQRRGSA  432 (435)
Q Consensus       420 ~~~e~Fd~i~~~~  432 (435)
                        .||||.|..+-
T Consensus       141 --~Egf~~i~~i~  151 (172)
T d1yj5a2         141 --AEGFLEILEIP  151 (172)
T ss_dssp             --GGSCSCEEEEC
T ss_pred             --ccCCcEEEEEC
Confidence              79999997653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.78  E-value=1.1e-18  Score=150.51  Aligned_cols=137  Identities=21%  Similarity=0.322  Sum_probs=99.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHH-HHHHHHHHHHHHHHHHHHhc--
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF-QCLMGRANAIFDVLLSRASR--  342 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~-~~~~~~~~~~~~~ll~~al~--  342 (435)
                      .+||+|+|+|||||||+|++|++...+  +.+++.|++++.+..........+.... .......    ..++..+++  
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   75 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ----FDTAKSILYGG   75 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHH----HHHHHHHHTSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCC--CEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHH----HHHHHHHHHhh
Confidence            478999999999999999999887764  8899999998776321111111222221 2222222    223333333  


Q ss_pred             -CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831          343 -TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYV  411 (435)
Q Consensus       343 -~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe  411 (435)
                       .+..+|+|+||..+..|..+...+..++ .+.+|++++| +++++|+.+|.   .+.+|++++++|+++++
T Consensus        76 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~~~~  144 (152)
T d1ly1a_          76 DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMR  144 (152)
T ss_dssp             SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG---GGCCCHHHHHHHHHHHH
T ss_pred             ccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccC---CCCCCHHHHHHHHHHHH
Confidence             4568999999999999998777777665 7888999887 99999999994   45789999999998876

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.6e-12  Score=115.37  Aligned_cols=126  Identities=16%  Similarity=0.040  Sum_probs=80.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCC-Ccc-CCCC-hHHHHHHHHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPG-LLR-KHNY-SERFQCLMGRANAIFDVLLSRA  340 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G-~~~-~~~~-~~~~~~~~~~~~~~~~~ll~~a  340 (435)
                      |.||+|+|+|||||||+|++|++.+.  ..+..+++.|.+|..+.-.. ... .... ........+.....+..+++.+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            57999999999999999999997653  23467899999887653111 000 0011 1111222222333334444433


Q ss_pred             -hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 -SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 -l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                       ...|..||+|++|.....|..+.+.+.... .+.++.+.++ +++++++..+.
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  135 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHHHH
Confidence             356789999999999999998777666554 5556667665 67777776554

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.37  E-value=1.7e-12  Score=112.28  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=77.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      .++|+|+|+|||||||+|++|++.++.  .++++.|.+++.+. .+.........    ........+..++..++..+.
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~--~~~~~~d~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   74 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDN--SAYIEGDIINHMVV-GGYRPPWESDE----LLALTWKNITDLTVNFLLAQN   74 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSS--EEEEEHHHHHTTCC-TTCCCGGGCHH----HHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC--CEEEehHHHHHHHh-ccccchhHHHH----HHHHHHHHHHHHHHHHHhcCC
Confidence            479999999999999999999999874  56678888876542 11111111111    111122233445556678999


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHh-cCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          346 NFIIDQTNVFKSARKRKLRLFV-NFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~-~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ++|+|.+......+.. ...+. ...  .+.++++.++ +++.+|+..|.
T Consensus        75 ~~iid~~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  123 (176)
T d2bdta1          75 DVVLDYIAFPDEAEAL-AQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (176)
T ss_dssp             EEEEESCCCHHHHHHH-HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             CcccccccccHHHHHH-HHHHHHhcCCCceEEEeccccHHHHHHHHHhCC
Confidence            9999999877666653 33332 232  4556777776 89999999984

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.7e-12  Score=112.71  Aligned_cols=137  Identities=12%  Similarity=0.138  Sum_probs=91.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCCh-HHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      +..+++++|+|||||||+|+.|++.++   +..++.|.++.............+. ........    .+...+...+..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   77 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQ----ALNDAAFAMQRT   77 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT---CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CCeechhhhhHHHHhhhhccCcceehhhhHHHHH----HHHHHHHHHHhc
Confidence            478999999999999999999999987   5667777653221100000001111 11111111    222344445577


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                      +..++++........|..    +.... .+.+|+|.+| +++++|+.+|.   ++..+.+.++.+.+.++.|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~l~~~~e~~~~Rl~~R~---~~~~~~~~~~~~~~~~e~~~~  144 (171)
T d1knqa_          78 NKVSLIVCSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARK---GHFFKTQMLVTQFETLQEPGA  144 (171)
T ss_dssp             CSEEEEECCCCSHHHHHH----HHTTCTTEEEEEEECCHHHHHHHHHTST---TCCCCHHHHHHHHHHCCCCCT
T ss_pred             cCceEeeccchHHHHHHH----HHHhCCCceEEeecCCHHHHHHHHHhCc---CCCccHHHHHhhHHHhhCCCc
Confidence            888999988877665553    33433 6788899886 89999999983   566789999999999988764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.29  E-value=2.1e-11  Score=105.63  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=86.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc--cCCCc-c-----CCCC--hHHHHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK--VPGLL-R-----KHNY--SERFQCLMGRANAIFDV  335 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~--~~G~~-~-----~~~~--~~~~~~~~~~~~~~~~~  335 (435)
                      .++|+|+|+|||||||+|+.|++.++.. ++.++.|.+...+.  ..... .     ....  ...+..+    ...+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   77 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEP-WLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRAL----EGAWAE   77 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSC-EEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHH----HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCC-eEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHH----HHHHHH
Confidence            4799999999999999999999998743 67778787765432  01110 0     0001  1111112    222334


Q ss_pred             HHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCC
Q 013831          336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP  413 (435)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P  413 (435)
                      .+...++.+.++|+|.+..........+..+.....+.+|+|.++ +++.+|+..|    +...+ .....+.+.++.|
T Consensus        78 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R----~~~~~-~~~~~~~~~~~~~  151 (178)
T d1qhxa_          78 GVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR----GDRVA-GMAAKQAYVVHEG  151 (178)
T ss_dssp             HHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT----SSSCT-THHHHHTTGGGTT
T ss_pred             HHHHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhc----CCcch-hhhhhhhhhhhcC
Confidence            455556889999999988776655544444443336778888886 8999999888    22233 3444555555443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.26  E-value=4e-11  Score=104.11  Aligned_cols=137  Identities=15%  Similarity=0.115  Sum_probs=85.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      .++|+|+|+|||||||+|+.+++.++. .++.++.|.++..+.. +.......  ............+...+...+..+.
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~-~~~~~~~d~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   79 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGV-PKVHFHSDDLWGYIKH-GRIDPWLP--QSHQQNRMIMQIAADVAGRYAKEGY   79 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSS-CEEEECTTHHHHTCCS-SCCCTTSS--SHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC-CEEEecHHHHHHHHhc-CCcccccc--hhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999999998753 3788899988765431 11111111  1111111112223334555567899


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCC
Q 013831          346 NFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP  413 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P  413 (435)
                      ++|+|.... +..+..    +... ....++++.++ +++.+|+.+|...  .....+.+..+++.+..+
T Consensus        80 ~vi~~~~~~-~~~~~~----~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~--~~~~~~~~~~~~~~~~~~  142 (176)
T d1zp6a1          80 FVILDGVVR-PDWLPA----FTALARPLHYIVLRTTAAEAIERCLDRGGD--SLSDPLVVADLHSQFADL  142 (176)
T ss_dssp             EEEECSCCC-TTTTHH----HHTTCSCEEEEEEECCHHHHHHHHHTTCTT--SCCCHHHHHHHHHHTTCC
T ss_pred             CeEeccccc-HHHHHH----HHhcccccccccCCCCHHHHHHHHHhCCCc--cccchhhHHHHHHHHhhc
Confidence            999998743 333332    2332 25667777765 9999999998421  223477777787776533

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.17  E-value=4e-10  Score=100.10  Aligned_cols=133  Identities=20%  Similarity=0.275  Sum_probs=78.3

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHH--------HHHHHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDV  335 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~~  335 (435)
                      +.+.+|+++|+|||||||+|+.|++.++   +.+|++++++++....+.    ..........+        .....+..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g---~~~i~~g~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQSGS----KDGEMIATMIKNGEIVPSIVTVKLLKN   76 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTC----TTHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEchhhHHHHHhhhhh----hhhhhhhhHhhhccccchHHHHHHHHH
Confidence            4578999999999999999999999987   788888766443211111    00110010000        00011111


Q ss_pred             HHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCC-CCcHHHHHH
Q 013831          336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGK-EVPADAVNN  405 (435)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~-~vp~~vi~~  405 (435)
                      .  ......+.+|+|....+..++..+.+...... ...+|+++++ +++.+|+..|...... ....+++++
T Consensus        77 ~--~~~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~  147 (194)
T d1qf9a_          77 A--IDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKK  147 (194)
T ss_dssp             H--HHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHH
T ss_pred             H--hhhhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHH
Confidence            1  11234567999998888877665333333333 3456788886 8999999887543222 233455443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.15  E-value=8.1e-11  Score=106.74  Aligned_cols=118  Identities=18%  Similarity=0.111  Sum_probs=80.5

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSR  339 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~  339 (435)
                      ++..+|+|+|||||||||+|+.|.+.+.   ...++++..|.+|..+.  .   +..|... ......+    +..++..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~--~---~l~ys~~~r~~~~~r----~~~~a~~   92 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN--K---DLGFSEADRNENIRR----IAEVAKL   92 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTT--T---TCCSSHHHHHHHHHH----HHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhc--C---CCCCChhHHHHHHHH----HHHHHHH
Confidence            3478999999999999999999986542   22378899999877542  1   2234332 1222222    2234445


Q ss_pred             HhcCCCeEEEeCCCcCHHHHHHHHHHHhc------CC-cEEEEEECCh-HHHHHHHHHh
Q 013831          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVN------FR-KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~------~~-~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ...+|..||++.+......|...-+.+..      .. .+..||+.++ ++|.+|..++
T Consensus        93 ~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~  151 (208)
T d1m7ga_          93 FADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKG  151 (208)
T ss_dssp             HHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTC
T ss_pred             HhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhccc
Confidence            56899999999999999999864333321      22 4667899887 8999887655

>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: Similar to Ret finger protein-like 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.2e-10  Score=99.64  Aligned_cols=146  Identities=12%  Similarity=0.052  Sum_probs=100.0

Q ss_pred             CeEEeCcCCCCCCeEEcCCCceEeec--------CCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 013831           42 QRVVLNPADCDLDFDIEDNGLKSSGL--------HQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH  113 (435)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~--------~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~  113 (435)
                      ..++||+....++|.||+|+.+++..        +.+.|. .+..|.++.++.+|++||||.|..             ..
T Consensus        10 vdvtLDp~TAh~~L~lS~d~~~V~~~~~~~~~p~~p~rF~-~~~~VLg~~~fssGrHYWEV~V~~-------------~~   75 (188)
T d2fbea1          10 VDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFD-TALCVLGTPRFTSGRHYWEVDVGT-------------SQ   75 (188)
T ss_dssp             CCCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCS-SSCEEEESCCBSSSEEEEEEECTT-------------CS
T ss_pred             EeeEcCCCCCCCCEEEccCCcEEEECCcCCCCCCCccccc-ceeeccccccccCCCEEEEEEeee-------------CC
Confidence            35789999999999999999887532        223443 367899999999999999999853             36


Q ss_pred             cEEEEEecCCCC---CCCCCCCCcceEEe-cCCceE--eCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEe--Cccc
Q 013831          114 VCRVGTSRGDDP---VGKLGETEQSFGFG-GTGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAK--NGKW  185 (435)
Q Consensus       114 ~~rvG~s~~~~~---~~~lG~d~~S~gy~-~~G~~~--~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~--NG~~  185 (435)
                      .+.||++.....   ...++.+..+|.+. .+|..+  |++.....-.. ..-..||++||++.   ++|+|+-  +++.
T Consensus        76 ~w~vGV~~~sv~Rk~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~~l~~~-~~~~rVGV~LDye~---G~lSFyn~~~~~~  151 (188)
T d2fbea1          76 VWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWVS-PQLHRVGIFLDVGM---RSIAFYNVSDGCH  151 (188)
T ss_dssp             EEEEEEEETTSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEECCC-TTCCEEEEEEETTT---TEEEEEETTTTEE
T ss_pred             eEEEEEEeCCcCcCcccccCCCCCCEEEEecCCcEEEecCCCceeeccC-CCCCEEEEEEEcCC---CEEEEEeCCCCcE
Confidence            789999986542   33556666788875 455443  33332222111 34579999999998   8999973  3333


Q ss_pred             eeecccccCCCCCccccccccccccCCCceeeEEEEc
Q 013831          186 LGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK  222 (435)
Q Consensus       186 lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~  222 (435)
                      |- .|. ...               ..+++||+.++.
T Consensus       152 L~-tF~-~~~---------------F~~pl~P~F~~~  171 (188)
T d2fbea1         152 IY-TFI-EIP---------------VCEPWRPFFAHK  171 (188)
T ss_dssp             EE-EEC-SCC---------------CSSCEEEEEEEE
T ss_pred             EE-EEC-CCC---------------CCCCEeCeEECc
Confidence            32 221 111               257899999985

>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: 52 kDa Ro protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.3e-09  Score=93.60  Aligned_cols=146  Identities=10%  Similarity=0.038  Sum_probs=100.5

Q ss_pred             eEEeCcCCCCCCeEEcCCCceEeecC--------CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCc
Q 013831           43 RVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV  114 (435)
Q Consensus        43 ~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~  114 (435)
                      .++|||....++|.||+|+.+++...        ++.|. .|..|.++-++.+|++||||.|..             ...
T Consensus         2 ~lTLDp~TAh~~L~lS~d~~~V~~~~~~~~~p~~p~RF~-~~~~VLg~~~f~sG~HYWEVeV~~-------------~~~   67 (179)
T d2iwgb1           2 HITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFD-SYPMVLGAQHFHSGKHYWEVDVTG-------------KEA   67 (179)
T ss_dssp             CCCBCTTTCCTTEEECTTSCEEEECSSCCCCCCCTTSCC-SSSCEEBSCCBSSSEEEEEEECTT-------------CSC
T ss_pred             eeEECCCcCCCCEEEcCCCCEEEECCcCcCCCCCccccc-ccccccccccccCCCEEEEEEEee-------------CCe
Confidence            47899999999999999999886432        12222 477899999999999999999953             357


Q ss_pred             EEEEEecCCCC---CCCCCCCCcceEEe-cCCceE--eCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEe--Cccce
Q 013831          115 CRVGTSRGDDP---VGKLGETEQSFGFG-GTGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAK--NGKWL  186 (435)
Q Consensus       115 ~rvG~s~~~~~---~~~lG~d~~S~gy~-~~G~~~--~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~--NG~~l  186 (435)
                      ++||.+.....   ...++.+..+|+.. .+|..+  |.......... ..-..||++||++.   ++|+|+-  +...+
T Consensus        68 w~vGV~~~s~~Rk~~~~~~~~~~~W~l~~~~~~~~~~~~~~~~~l~~~-~~~~riGV~LD~e~---G~lsFy~v~~~~~l  143 (179)
T d2iwgb1          68 WDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQ-VPPCQVGIFLDYEA---GMVSFYNITDHGSL  143 (179)
T ss_dssp             EEEEEEETTCCCSSCCCCCTTTTEEEEEEETTTEEEECCSSCEEECCS-SCCSEEEEEEETTT---TEEEEEETTTTTEE
T ss_pred             EEEEEEcCccCcCcccccCCCCCEEEEEEeCCceEEEecCCCEeEccc-cCccEEEEEEecCC---CEEEEEeCCCCCeE
Confidence            99999986532   34677888899875 344433  33333332222 23358999999998   8999984  22233


Q ss_pred             eecccccCCCCCccccccccccccCCCceeeEEEEc
Q 013831          187 GTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK  222 (435)
Q Consensus       187 g~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~  222 (435)
                      --.|. ...               ..+++||+.++.
T Consensus       144 i~tf~-~~~---------------F~~pl~P~F~~~  163 (179)
T d2iwgb1         144 IYSFS-ECA---------------FTGPLRPFFSPG  163 (179)
T ss_dssp             EEEEC-CCC---------------CCSCEEEEEECC
T ss_pred             EEEeC-CcC---------------CCCCeECeEECc
Confidence            32332 111               257899998864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.03  E-value=7.5e-10  Score=102.73  Aligned_cols=129  Identities=16%  Similarity=0.219  Sum_probs=83.9

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al  341 (435)
                      ....++.|+|.|+||+||||+|+.++..+.. .++.|+.|+++..................+.....+.......+..++
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLS  106 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhc-ceEEEecHHHHHHhccCcccchhhhHHHHHHHHhhccchHHHHHHHHH
Confidence            3345789999999999999999999998753 488999999876432100000000000112222222233334455667


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      ..+.+.++|.|+.........+..+...+ .+.+.++..+ +....|+..|.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R~  158 (273)
T d1gvnb_         107 DQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERY  158 (273)
T ss_dssp             HHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             hhCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcCC
Confidence            78889999999988888777777777655 5566666665 77777777763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.5e-09  Score=92.37  Aligned_cols=142  Identities=13%  Similarity=0.080  Sum_probs=68.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS  341 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al  341 (435)
                      +..+|+|+|+|||||||+|+.|++.+..  .....+..|.++..+.     ....+.. .......    .....+....
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~   88 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN-----KNLGFSPEDREENVR----RIAEVAKLFA   88 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTT-----TTCCSSHHHHHHHHH----HHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccc-----cccchhhhHHHHHHH----HHHHHHHHHH
Confidence            3678999999999999999999987531  1245566666543321     1111111 1111111    1223445556


Q ss_pred             cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN  415 (435)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~  415 (435)
                      ..+..++++.++.....+..+...+.... .+..+.+..+ .+..+++.+|............+..+...|+.|..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  164 (195)
T d1x6va3          89 DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEA  164 (195)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------------------------CCCCCSS
T ss_pred             hcCCccccccccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhccccCCCCC
Confidence            89999999999999888886444444433 4455555554 55566655543221222223334444456776643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=3.3e-08  Score=87.56  Aligned_cols=136  Identities=20%  Similarity=0.270  Sum_probs=75.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHH--------HHHHH-HHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANA-IFD  334 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~--------~~~~~-~~~  334 (435)
                      ...+|+++|+|||||||.|+.|++.++   +.+|++++++++ ....+.    ..........        ..... ...
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g---~~~is~gdl~R~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~   79 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQGRAGS----QYGELIKNCIKEGQIVPQEITLALLRN   79 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHHHSTTC----SCHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEehhHHHHHHhhhccc----HHHHHHHHhhhccccccchhHHHHHHH
Confidence            467899999999999999999999997   788998665443 321111    0000000000        00111 111


Q ss_pred             HHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCC-CCcHHHHHHHHhc
Q 013831          335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGK-EVPADAVNNMLAN  409 (435)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~-~vp~~vi~~m~~~  409 (435)
                      .+..........+|+|..-.+..+...+.+..  ...-.++++.++ +++++|...|....++ ....+.+++..+.
T Consensus        80 ~~~~~~~~~~~~~vl~g~p~~~~q~~~~~~~~--~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~  154 (196)
T d1ukza_          80 AISDNVKANKHKFLIDGFPRKMDQAISFERDI--VESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNT  154 (196)
T ss_dssp             HHHHHHHTTCCEEEEETCCCSHHHHHHHHHHT--CCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHH
T ss_pred             HHHhhhccCCCceeeeccchhHHHHHHHHHhc--cccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence            22222334567899999766655433211111  123455677766 8889998877543322 3345555554433

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.80  E-value=3.2e-08  Score=87.15  Aligned_cols=132  Identities=20%  Similarity=0.195  Sum_probs=72.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDV  335 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~  335 (435)
                      +..++| +.|+|||||||.|+.|++.++   +.+|++++++++....+...    ......+.        +.....+..
T Consensus         2 ~~~rii-l~G~pGSGKsT~a~~La~~~g---~~~i~~gdllr~~~~~~~~~----g~~~~~~~~~g~~~~~~~v~~~~~~   73 (190)
T d1ak2a1           2 KGVRAV-LLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMVASGSEL----GKKLKATMDAGKLVSDEMVLELIEK   73 (190)
T ss_dssp             CCCEEE-EECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHH----HHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CccEEE-EECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHhccCcc----cchhhhhhccCCccccceeeeeehh
Confidence            345666 469999999999999999987   78888866544321111100    00000000        001111111


Q ss_pred             HHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831          336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNM  406 (435)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m  406 (435)
                      .+.. ......+|+|....+..+...+...+....  ...+++++.+ +.+.+|...|...  .+...+++.+.
T Consensus        74 ~l~~-~~~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~--~d~~~e~i~~R  144 (190)
T d1ak2a1          74 NLET-PPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH--SDDNKKALKIR  144 (190)
T ss_dssp             HHTS-GGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC--CCCCHHHHHHH
T ss_pred             hhcc-ccccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCC--CchhhHHHHHH
Confidence            1111 123456899997666666555444444332  4456677776 7888999888532  23344554443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.77  E-value=1.6e-08  Score=87.07  Aligned_cols=112  Identities=18%  Similarity=0.106  Sum_probs=66.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCcc-CCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRASRT  343 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~ll~~al~~  343 (435)
                      ....|+++|+|||||||+|+.|++.++.  +.+++.|.+........... .......+......    +...+......
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~   77 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELDG--FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDR----LLDFMEPIMVS   77 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHHHHHHHTTCSCC------CCCCCHHHHHH----HHHHHHHHHTS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhCC--CcEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHH----HHHHHHhhhhh
Confidence            3556888899999999999999999874  56677777765532111100 00000001112222    12233445577


Q ss_pred             CCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831          344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +..+++|.....      +   +..-....+|+|.++ +++.+|+.+|.
T Consensus        78 ~~~~~~~~~~~~------~---~~~~~~~~vI~L~~~~e~l~~Rl~~R~  117 (174)
T d1y63a_          78 RGNHVVDYHSSE------L---FPERWFHMVVVLHTSTEVLFERLTKRQ  117 (174)
T ss_dssp             SSEEEEECSCCT------T---SCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             cccccccHHHHH------H---HHHhcCceEEEEECCHHHHHHHHHhCC
Confidence            788888875442      1   111113456788886 89999999983

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.3e-07  Score=83.27  Aligned_cols=136  Identities=17%  Similarity=0.216  Sum_probs=74.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHH--------HHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLL  337 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~~ll  337 (435)
                      |.+|++.|+|||||||.|+.+++.++   +.+|++.+++++......   ..........++        .....+...+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g---~~~i~~g~llR~~~~~~~---~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~   74 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERKNPD---SQYGELIEKYIKEGKIVPVEITISLLKREM   74 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHCTT---STTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC---CceEcHHHHHHHHHHhhh---hhHHHHHHHHHhcCCccccchhhHHHHHhh
Confidence            46889999999999999999999987   788888776544221110   001111000000        0001111111


Q ss_pred             HH---HhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEE-EEEECCh-HHHHHHHHHhhhhcCC-CCcHHHHHHHHh
Q 013831          338 SR---ASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIA-VVVFPKP-EDLKIRSVKRFKEMGK-EVPADAVNNMLA  408 (435)
Q Consensus       338 ~~---al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~-vv~l~~~-ee~~~R~~~R~~~~~~-~vp~~vi~~m~~  408 (435)
                      ..   .......+|+|..-.+..+-.. +..+.. ...+. +++++.+ +++.+|...|....++ ....+.+.+..+
T Consensus        75 ~~~~~~~~~~~~~~~~g~pr~~~~~~~-l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~  151 (194)
T d1teva_          75 DQTMAANAQKNKFLIDGFPRNQDNLQG-WNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQ  151 (194)
T ss_dssp             HHHHHHCTTCCEEEEESCCCSHHHHHH-HHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHH
T ss_pred             cccchhhhcccceeeccchhhHHHHHH-HhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHH
Confidence            11   1234567899997766554443 333333 33443 4566665 7888998888544332 234555555443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=5.7e-08  Score=84.83  Aligned_cols=131  Identities=18%  Similarity=0.206  Sum_probs=74.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh--
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS--  341 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al--  341 (435)
                      |++.|+|||||||.|+.|++.++   +.+|++++++++ +. ...    ..........+.    -......++...+  
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g---~~~i~~~~l~~~~~~-~~~----~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~   74 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIE-EGT----KLGVEAKRYLDAGDLVPSDLTNELVDDRLNN   74 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHH-TTC----HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CceEchHHHHHHHHh-hhh----hhHHHHHHHHHhhhhhhhHHHHHHHHHHhhC
Confidence            56779999999999999999986   678888766443 21 000    000000111110    0011122332222  


Q ss_pred             -cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcc
Q 013831          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANY  410 (435)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~f  410 (435)
                       .....+|+|..-....+...+...+.... . -.+++++++ +++.+|+..|.+   ....++++.+..+.|
T Consensus        75 ~~~~~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r---~~~~~~~i~~rl~~y  144 (181)
T d2cdna1          75 PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR---ADDTDDVILNRMKVY  144 (181)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC---TTCSHHHHHHHHHHH
T ss_pred             ccccccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccccc---ccchhHHHHHHHHHH
Confidence             34567999997777766665444444333 2 345677776 899999998842   233455655444433

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=2.6e-08  Score=87.19  Aligned_cols=115  Identities=17%  Similarity=0.141  Sum_probs=67.2

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHH--------HHHHHHHHHHHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLLSRA  340 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~a  340 (435)
                      |++.|+|||||||.|+.|++.++   +..|++++++++....+.    ......+....        .....+...+...
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g---~~~i~~~d~~~~~~~~~~----~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~   77 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIAKGT----QLGLEAKKIMDQGGLVSDDIMVNMIKDELTNN   77 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceEeccccceeccccCC----hHHHHHHHHHhhhcccccchhHHHHHHHHhcC
Confidence            45669999999999999999987   778888776654321111    00000000000        0000111111111


Q ss_pred             hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ......+|+|..-.+..+...+.+.+....  ...+++++++ +++.+|+..|
T Consensus        78 ~~~~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~  130 (180)
T d1akya1          78 PACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA  130 (180)
T ss_dssp             GGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH
T ss_pred             ccccCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc
Confidence            224456999998887777665444454433  4567788886 8889998766

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.67  E-value=2.8e-08  Score=87.59  Aligned_cols=111  Identities=18%  Similarity=0.115  Sum_probs=64.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH-----------HHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR-----------ANAIFD  334 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~-----------~~~~~~  334 (435)
                      |-.|++.|+|||||||.|+.|++.++   +.+++.+.++++....+.       ..+....+.           ....+.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~---~~~is~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~   72 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRAEIAAGS-------ENGKRAKEFMEKGQLVPDEIVVNMVK   72 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHHHHHHTC-------HHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC---CcEEehhHHHHHhhhccc-------HHHHHHHHHHhcCCcccceeehhhhh
Confidence            44578999999999999999999987   788998776554211110       000000000           000111


Q ss_pred             HHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHh
Q 013831          335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ..+.........+|+|....+..+..    .+....  .-.+++++.+ +++.+|...|
T Consensus        73 ~~~~~~~~~~~~~vid~~~~~~~q~~----~l~~~~~~p~~~i~L~~~~e~l~~R~~~~  127 (189)
T d1zaka1          73 ERLRQPDAQENGWLLDGYPRSYSQAM----ALETLEIRPDTFILLDVPDELLVERVVFD  127 (189)
T ss_dssp             HHHHSHHHHHTCEEEESCCCSHHHHH----HHHTTTCCCSEEEEEECCHHHHHHHHTTT
T ss_pred             hHhhhcccccCcEEeeccchhhHHHh----hhhhcccccchheeechhhhhhhhhcccc
Confidence            11111122345689999766654433    344432  3356788876 8899998665

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.62  E-value=1e-07  Score=82.48  Aligned_cols=111  Identities=19%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-cCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      +.|+|+|+|||||||+|+.+++.++   +..++.|.++++.  .|.. .+......++...+    .....+......+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg---~~~id~D~~ie~~--~g~~i~ei~~~~g~~~~~~----~~~~~l~~~~~~~~   73 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG---YEFVDTDIFMQHT--SGMTVADVVAAEGWPGFRR----RESEALQAVATPNR   73 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHH--HCSCHHHHHHHHHHHHHHH----HHHHHHHHHCCSSE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC---CCEEehhhhhhhh--hhhhhhhhhcccchHHHHH----HHHHHHHhhccccc
Confidence            3467889999999999999999987   6788889876553  2310 00000111222222    12223333334444


Q ss_pred             eEEEeCCCc-CHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhh
Q 013831          346 NFIIDQTNV-FKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       346 ~vIlD~Tn~-~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      .+++....+ ....|.    .+...  -.+|++.++ +++.+|+..|..
T Consensus        74 ~~~~~~~~~~~~~~~~----~l~~~--~~~v~L~~~~e~l~~Rl~~~~~  116 (170)
T d1e6ca_          74 VVATGGGMVLLEQNRQ----FMRAH--GTVVYLFAPAEELALRLQASLQ  116 (170)
T ss_dssp             EEECCTTGGGSHHHHH----HHHHH--SEEEEEECCHHHHHHHHHHHHC
T ss_pred             eecccccchhhhHHHH----hhhcc--ceeEEEecCchhHHHHHhhccc
Confidence            444433322 222222    23332  246778776 899999887743

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=4.6e-08  Score=85.25  Aligned_cols=114  Identities=17%  Similarity=0.122  Sum_probs=62.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHH----HHHHHHHHHHHHHHHhcCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCL----MGRANAIFDVLLSRASRTP  344 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~----~~~~~~~~~~ll~~al~~g  344 (435)
                      |++.|+|||||||.|+.|++.++   +.+|++++++++..-.+...........+.-    .......+...+.. ....
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~---~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~-~~~~   78 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQ-EDCR   78 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTS-GGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcc-cccc
Confidence            56789999999999999999987   6788887765543211110000000000000    00011111111111 1233


Q ss_pred             CeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHh
Q 013831          345 RNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      ..+|+|...-+..+    ...+....  .-.+++++++ +++.+|...|
T Consensus        79 ~g~i~~g~pr~~~~----~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~  123 (179)
T d1e4va1          79 NGFLLDGFPRTIPQ----ADAMKEAGINVDYVLEFDVPDELIVDRIVKD  123 (179)
T ss_dssp             GCEEEESCCCSHHH----HHHHHHTTCCCSEEEEEECCHHHHHHHHHTT
T ss_pred             cceeecccccchHH----hhhhhhccCCceEEEEeccchhhhhhhhccc
Confidence            57899997665443    23344433  3456788886 8899998877

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.59  E-value=1.3e-07  Score=83.62  Aligned_cols=118  Identities=20%  Similarity=0.231  Sum_probs=65.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVL  336 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~l  336 (435)
                      .+++|++.|+|||||||.|+.|++.++   +.+|+++++++.....+..    .........        +.....+...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g---~~~is~g~llr~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRAEVSSGSA----RGKMLSEIMEKGQLVPLETVLDMLRDA   79 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTC---CEEEEHHHHHHHHHHHTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC---CeeEeccHHHHHHHHHhHh----hhhhhHHHHhhccCCchheeeeehhhh
Confidence            578999999999999999999999987   7889987765543211110    000000000        0011111112


Q ss_pred             HHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhh
Q 013831          337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (435)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~  392 (435)
                      +.......+.+|+|.---+..+-.. +..  ... ...++++..+ +++.+|...|..
T Consensus        80 l~~~~~~~~g~ildg~pr~~~qa~~-~~~--~~~~~~~~~~~~~~~~~~~~r~~~~~~  134 (194)
T d3adka_          80 MVAKVDTSKGFLIDGYPREVKQGEE-FER--KIGQPTLLLYVDAGPETMTKRLLKRGE  134 (194)
T ss_dssp             HHTTTTTCSCEEEESCCSSHHHHHH-HHH--HTCCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             hhhcccccccceeeeccchhHHHHH-HHH--HhCCccchhccccchhhhHhHhhhhcc
Confidence            2222234567999996555443332 221  122 3344555554 777888776643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.54  E-value=4.9e-07  Score=78.80  Aligned_cols=112  Identities=18%  Similarity=0.173  Sum_probs=62.4

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHH-------HHHHHHHHHH-
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN-------AIFDVLLSRA-  340 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~a-  340 (435)
                      |++.|+|||||||.|+.|++.++   +.+|++++++++-...+       .+.+..+.....       .....++..+ 
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g---~~~is~gdllr~~~~~~-------~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~   72 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG---TPHISTGDMFRAAIQEG-------TELGVKAKSFMDQGALVPDEVTIGIVRERL   72 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHT-------CHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CceeeHHHHHHHhhhcC-------CchHHHHHHHHHcCCcccCcchhHHHHHhh
Confidence            66789999999999999999987   67888866544321111       111111111000       0111122222 


Q ss_pred             --hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHh
Q 013831          341 --SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 --l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~~-ee~~~R~~~R  390 (435)
                        ......+|+|.--.+..+-..+.+.+.... . ..++.++.+ +.+.+|...+
T Consensus        73 ~~~~~~~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~  127 (182)
T d1s3ga1          73 SKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD  127 (182)
T ss_dssp             TSSTTSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT
T ss_pred             cccccccceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc
Confidence              123456899997676666555444444443 2 334556665 7777776544

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.53  E-value=6e-07  Score=79.17  Aligned_cols=111  Identities=18%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-HhccCCCccCCCChHHHHHHH--------HHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-QMKVPGLLRKHNYSERFQCLM--------GRANAIFDVL  336 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~l  336 (435)
                      ++ |+++|+|||||||.|+.|++.++   +.+||++++++ ++.-.+.     ........+        +.....+...
T Consensus         7 mr-IiliG~PGSGKtT~a~~La~~~g---~~~is~gdllr~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~l~~~~   77 (189)
T d2ak3a1           7 LR-AAIMGAPGSGKGTVSSRITKHFE---LKHLSSGDLLRDNMLRGTE-----IGVLAKTFIDQGKLIPDDVMTRLVLHE   77 (189)
T ss_dssp             CE-EEEECCTTSSHHHHHHHHHHHBC---CEEEEHHHHHHHHHHTTCH-----HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             ee-EEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHHhhhh-----hhHHHHHHhhhhhhccchhhhhhhhhh
Confidence            44 45669999999999999999987   78899976644 3321110     000000000        0011112222


Q ss_pred             HHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhh
Q 013831          337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +..  .....+|+|..--+..+..    .+... ....+++++++ +.+.+|+..|.
T Consensus        78 ~~~--~~~~~~ildGfPr~~~q~~----~l~~~~~~~~vi~L~v~~~~l~~R~~~r~  128 (189)
T d2ak3a1          78 LKN--LTQYNWLLDGFPRTLPQAE----ALDRAYQIDTVINLNVPFEVIKQRLTDRP  128 (189)
T ss_dssp             HHH--HTTSCEEEESCCCSHHHHH----HHHTTCCCCEEEEEECCHHHHHHHHTGSH
T ss_pred             hhh--hhhcCcccccccchhhHHH----HhhhcCcceEEEEEeccchhhhhhcccch
Confidence            222  2445799998655554322    23332 23456788887 78888887663

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.50  E-value=2.4e-07  Score=79.34  Aligned_cols=43  Identities=16%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCC---ccEEEeccHHHHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQ  306 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~---~~~~~ls~D~ir~~  306 (435)
                      ++..+|+|+|+|||||||+|+.|++.++.   .....+..|..+..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~   49 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE   49 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhc
Confidence            45689999999999999999999987641   11344555555443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.41  E-value=1.6e-06  Score=74.87  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHH-------HHHHHHHHHHH-
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA-------NAIFDVLLSRA-  340 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~-------~~~~~~ll~~a-  340 (435)
                      |++.|+|||||||.|+.|++.++   +.+|+++++++.-....       .+.+..+....       ......++... 
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~---~~~i~~~~ll~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   72 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG---IPHISTGDMFRAAMKEG-------TPLGLQAKQYMDRGDLVPDEVTIGIVRERL   72 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHT-------CHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CceechhHHHHHhhccC-------ChhhHHHHHHHHcCCeeccchHHHHHHHHh
Confidence            67899999999999999999987   67888877654321001       01111110000       00011111111 


Q ss_pred             --hcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC--cEEEEEECCh-HHHHHHHHHh
Q 013831          341 --SRTPRNFIIDQTNVFKSARKRKLRLFVN-FR--KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 --l~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~--~~~vv~l~~~-ee~~~R~~~R  390 (435)
                        ......+|+|..-........ +..... ..  ...++++.++ +.+.+|...|
T Consensus        73 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~  127 (182)
T d1zina1          73 SKDDCQNGFLLDGFPRTVAQAEA-LETMLADIGRKLDYVIHIDVRQDVLMERLTAD  127 (182)
T ss_dssp             TSGGGTTCEEEESCCCSHHHHHH-HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT
T ss_pred             hchhhhcCcccccccchhHHHHH-HHHhhhccCCceeeeeccccccchhhhccccc
Confidence              122456888887665544442 333332 22  2345566665 8888888766

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.40  E-value=1.2e-07  Score=81.44  Aligned_cols=35  Identities=31%  Similarity=0.617  Sum_probs=30.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      |+++|+|||||||+++.+++.++   +..+++|.++++
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~---~~~~d~d~~ie~   37 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLIEQ   37 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CCEEecCchhhh
Confidence            67789999999999999999987   677888877554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.37  E-value=2.1e-07  Score=80.20  Aligned_cols=37  Identities=19%  Similarity=0.376  Sum_probs=27.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI  303 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~i  303 (435)
                      ++|++.|+|||||||+++.|++.+..  .....++.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~   40 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV   40 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCCh
Confidence            68999999999999999999876532  22445555443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=4.8e-07  Score=75.98  Aligned_cols=37  Identities=16%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      +.|+|+|+|||||||+|+.|++.++   +..++.|.+...
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~---~~~id~~~~~~~   39 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEK   39 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC---CCeEeechhHHh
Confidence            4688899999999999999999987   556666766544

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=2.7e-06  Score=75.74  Aligned_cols=143  Identities=13%  Similarity=0.057  Sum_probs=72.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEecc--------HHHHHHhccCCC-ccCCCChHHHHHHH--HHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGT--------NLILEQMKVPGL-LRKHNYSERFQCLM--GRANAI  332 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls~--------D~ir~~~~~~G~-~~~~~~~~~~~~~~--~~~~~~  332 (435)
                      .++|++-|++||||||.++.|.+.+...+  .+++..        +.+++.+. .+. .......+....+.  ......
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLL-DIKSVGDEVITDKAEVLMFYAARVQL   80 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH-STTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHh-ccccccccccchHHHHHHHHHHHHHH
Confidence            46889999999999999999987643111  223211        23333321 111 01111111111111  111223


Q ss_pred             HHHHHHHHhcCCCeEEEeCCC------------cCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhhhhcC-CC
Q 013831          333 FDVLLSRASRTPRNFIIDQTN------------VFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFKEMG-KE  397 (435)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn------------~~~~~R~~~~~~~~~~-~~~~vv~l~~~-ee~~~R~~~R~~~~~-~~  397 (435)
                      +...+..++..|..||+|...            .....-..+...+... ..-.+++++++ +++.+|+.+|..... ..
T Consensus        81 ~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~~~~~~  160 (210)
T d4tmka_          81 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQ  160 (210)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTT
T ss_pred             HHHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccccchhhh
Confidence            444566778899999999531            1111111111111111 23356788875 999999999954222 12


Q ss_pred             CcHHHHHHHHhc
Q 013831          398 VPADAVNNMLAN  409 (435)
Q Consensus       398 vp~~vi~~m~~~  409 (435)
                      .+.+.+.++.+.
T Consensus       161 ~~~~~~~~v~~~  172 (210)
T d4tmka_         161 ESFDFFNRTRAR  172 (210)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH
Confidence            345555554443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=9.2e-07  Score=77.60  Aligned_cols=118  Identities=18%  Similarity=0.283  Sum_probs=66.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCc--------------------cEEEeccHHHHHHhccCCCcc------CCCChH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEK--------------------RYILLGTNLILEQMKVPGLLR------KHNYSE  320 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~--------------------~~~~ls~D~ir~~~~~~G~~~------~~~~~~  320 (435)
                      +.|+++|++||||||++++|+++++..                    .+..++.+.+.+.. ..|..-      ...|.-
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~-~~g~f~e~~~~~g~~Yg~   80 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMI-KNNEFIEWAQFSGNYYGS   80 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH-HTTCEEEEEEETTEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHH-hcccceeeeEEccceeec
Confidence            348999999999999999999887632                    12333333332211 111100      001110


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-C--cEEEEEECCh-HHHHHHHHHhhhhcCC
Q 013831          321 RFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-R--KIAVVVFPKP-EDLKIRSVKRFKEMGK  396 (435)
Q Consensus       321 ~~~~~~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~--~~~vv~l~~~-ee~~~R~~~R~~~~~~  396 (435)
                      .            ...+...+..|+.+|+|.. .  .    .+..++.+ .  .+.+++++.+ +++.+|+.+|    +.
T Consensus        81 ~------------~~~i~~~~~~g~~~i~~~~-~--~----~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~R----g~  137 (186)
T d1gkya_          81 T------------VASVKQVSKSGKTCILDID-M--Q----GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR----GT  137 (186)
T ss_dssp             E------------HHHHHHHHHHTSEEEEECC-H--H----HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH----SC
T ss_pred             c------------hhhHHHHhcCCCeEEecch-H--H----HHHHHHHhhcccceEEEecCCcHHHHHHHHHhh----cc
Confidence            0            1123344578999999964 2  1    23334442 2  4555666765 8999999999    55


Q ss_pred             CCcHHHHHHHHh
Q 013831          397 EVPADAVNNMLA  408 (435)
Q Consensus       397 ~vp~~vi~~m~~  408 (435)
                      .-++++-.+|..
T Consensus       138 ~~~~~I~~Rl~~  149 (186)
T d1gkya_         138 ETEESINKRLSA  149 (186)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             chhHHHHHHHHH
Confidence            545555555543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.32  E-value=3.7e-07  Score=79.75  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=24.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      .++|+++|+|||||||+++.+.++++.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            368999999999999999999988763

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.31  E-value=1.1e-06  Score=74.84  Aligned_cols=36  Identities=17%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      |+++|+|||||||+|+.|++.+.   +..++.|.+.++.
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~---~~~i~~~~~~~~~   42 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG---LKYINVGDLAREE   42 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CcEEechHHHHHh
Confidence            66889999999999999999987   5667777765543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=8e-07  Score=78.37  Aligned_cols=127  Identities=17%  Similarity=0.187  Sum_probs=64.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCcc--CCCC--hHHHHHHHHHHH------------H
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR--KHNY--SERFQCLMGRAN------------A  331 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~--~~~~--~~~~~~~~~~~~------------~  331 (435)
                      .|+++|++||||||+++.|++.++..-...++...  +..+ .|...  ++.|  ...++...+.-.            .
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TT--R~~r-~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg   78 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTT--RNPR-PGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG   78 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEEC--SCCC-TTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEec--cCCC-CCCccCceeEEeehhHHHHHhhhhhheeeeEEcCccee
Confidence            37899999999999999999876642111111000  0000 11100  1111  111211111000            0


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHh
Q 013831          332 IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLA  408 (435)
Q Consensus       332 ~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~  408 (435)
                      .....++..+..|..+|++....       ....+....  .+.+++.+++ +++.+|+.+|    +..-.+++.+++..
T Consensus        79 ~~~~~v~~~~~~g~~~~~~~~~~-------~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R----~~~~~e~i~~rl~~  147 (190)
T d1lvga_          79 TSKEAVRAVQAMNRICVLDVDLQ-------GVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLR----NTETEESLAKRLAA  147 (190)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHH-------HHHHHTTSSCCCEEEEEECSCHHHHHHHHHHH----TCSCHHHHHHHHHH
T ss_pred             cccchhhhhhcCCCceeecchHh-------hhhhhhhccccceEEEEecchHHHHHHHHhhc----cccchHHHHHHHHH
Confidence            01123344557899999988421       233344433  4555566665 8999999998    44444555555543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.2e-06  Score=78.25  Aligned_cols=128  Identities=13%  Similarity=0.236  Sum_probs=69.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccE-EEeccHHHHHHhccCCCcc--CCCC--hHHHHHHHHHHH----------
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY-ILLGTNLILEQMKVPGLLR--KHNY--SERFQCLMGRAN----------  330 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~-~~ls~D~ir~~~~~~G~~~--~~~~--~~~~~~~~~~~~----------  330 (435)
                      ..+|+++|++||||||+.+.|.+..|...+ ..++...  +.++ .|...  +|.|  ...++...+.-.          
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TT--R~~R-~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~   78 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTT--RQPR-PGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN   78 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEEC--SCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEec--cCCC-ccccccccceeecHHHHHHHhhhhhheeEEEECCc
Confidence            478999999999999999999998774222 2232111  1111 12111  1222  122332222100          


Q ss_pred             --HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHH
Q 013831          331 --AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNN  405 (435)
Q Consensus       331 --~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~  405 (435)
                        -.....+..++..|+++|+|-. .  ..    +..++. +. .+.+++++++ +++.+|+.+|    +..-.+.+..+
T Consensus        79 ~YGt~~~~v~~~~~~g~~~ildid-~--~g----~~~lk~~~~~~~~ifi~pps~~~l~~RL~~R----g~~~~~~i~~R  147 (205)
T d1s96a_          79 YYGTSREAIEQVLATGVDVFLDID-W--QG----AQQIRQKMPHARSIFILPPSKIELDRRLRGR----GQDSEEVIAKR  147 (205)
T ss_dssp             EEEEEHHHHHHHHTTTCEEEEECC-H--HH----HHHHHHHCTTCEEEEEECSSHHHHHHHHHTT----SCSCHHHHHHH
T ss_pred             eeccccchHHHHHhcCCceeecCc-H--HH----HHHHHhhhcccceeeeeccchHHHHHHHHhc----CCchHHHHHHH
Confidence              0011244556799999999963 2  21    222222 33 4555566765 8899999998    44444444444


Q ss_pred             HH
Q 013831          406 ML  407 (435)
Q Consensus       406 m~  407 (435)
                      +.
T Consensus       148 l~  149 (205)
T d1s96a_         148 MA  149 (205)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.28  E-value=1.2e-06  Score=75.72  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=28.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~D  301 (435)
                      +++|+++|+|||||||.++.|++.++..  .+..++.+
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~   38 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG   38 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            5799999999999999999999876532  34555543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=9.8e-07  Score=75.65  Aligned_cols=37  Identities=38%  Similarity=0.529  Sum_probs=28.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      |.+| ++|+|||||||+++.+++.+.   +..++.|.+.++
T Consensus         2 p~Iv-liG~~G~GKSTig~~La~~l~---~~fiD~D~~ie~   38 (165)
T d2iyva1           2 PKAV-LVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQ   38 (165)
T ss_dssp             CSEE-EECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHH
T ss_pred             CcEE-EECCCCCCHHHHHHHHHHHhC---CCeEeeccchhh
Confidence            3444 559999999999999999986   456677876554

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.99  E-value=1.2e-05  Score=70.15  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=26.2

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      +++.+|++.|..||||||+++.|++.++.
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45789999999999999999999999875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.95  E-value=2.4e-05  Score=68.78  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +|++.|+.||||||.++.|.+.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999987653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.3e-05  Score=69.83  Aligned_cols=121  Identities=15%  Similarity=0.083  Sum_probs=58.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEe-----ccH--HHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILL-----GTN--LILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDV  335 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~l-----s~D--~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~  335 (435)
                      ..+|++.|+.||||||.++.|.+.+...  .++.+     ++.  .+++.+ +.+.   ...... ...+..........
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~-l~~~---~~~~~~~~~~l~~~~r~~~~~   78 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSY-LQKK---SDVEDHSVHLLFSANRWEQVP   78 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHH-HTTS---SCCCHHHHHHHHHHHHHTTHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhh-hhcc---cccchhhhhhHHHHHHHHHHH
Confidence            4689999999999999999988764321  23333     111  111221 1121   111111 11111111111123


Q ss_pred             HHHHHhcCCCeEEEeCCCcCHHHH--------HHHHHHHhcC--CcEEEEEECCh-HHHHHHHHHh
Q 013831          336 LLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~~--~~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      .+..++..|..||+|--..+.-..        ..++..+...  .+=.+++++.+ +++++|...|
T Consensus        79 ~i~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~  144 (209)
T d1nn5a_          79 LIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG  144 (209)
T ss_dssp             HHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred             hHHHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccc
Confidence            556777899999999742211111        0112222221  12245688876 8888886654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.85  E-value=3.4e-05  Score=67.05  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=30.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      .+-+|-++|.+||||||+|+.+. +++   +.+++.|.+.+.+
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~g---~~~~~~D~~~~~~   40 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SWG---YPVLDLDALAARA   40 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HTT---CCEEEHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCC---CeEEEccHHHHHh
Confidence            45678899999999999999884 454   6678888875543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=8.2e-05  Score=65.72  Aligned_cols=38  Identities=24%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC-------ccEEEeccHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-------KRYILLGTNL  302 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~-------~~~~~ls~D~  302 (435)
                      +|-||-++|.+||||||+|+.|++.++.       ....+|+.|.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~   45 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS   45 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccc
Confidence            3678889999999999999999887642       1256777774

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.00015  Score=64.17  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=29.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      +|-++|.+||||||+|+.+. +++   +.+++.|.+.+++
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G---~~vidaD~i~~~l   40 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLG---INVIDADIIARQV   40 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTT---CEEEEHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCC---CcEEEchHHHHHH
Confidence            77799999999999998775 555   7788999887654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=4.8e-05  Score=68.44  Aligned_cols=28  Identities=29%  Similarity=0.291  Sum_probs=25.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK  293 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~  293 (435)
                      |++|++-|+-||||||+++.|++.++..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            6899999999999999999999988753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.6e-05  Score=70.24  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      .||.+-|+|||||||.|+.|+++++   +.+||+-++.++
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g---l~~iStGdLlR~   40 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ---WHLLDSGAIYRV   40 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC---CcEECHHHHHHH
Confidence            4788889999999999999999997   889998666553

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=1.4e-05  Score=68.10  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=25.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .++.|+++|+|||||||+|+.|++.++
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            468899999999999999999999987

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00017  Score=64.07  Aligned_cols=42  Identities=29%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHH
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLI  303 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~i  303 (435)
                      +.+.+.+|+|+|++|+||||-+.+++..+  .++.+.+++.|..
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   48 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF   48 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            34458999999999999999998887542  2345778888854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.48  E-value=3.1e-05  Score=68.72  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~  306 (435)
                      +|.+-|+|||||||.|+.|++.++   +.+||+-++.+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg---~~~istGdl~R~   40 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG---FTYLDTGAMYRA   40 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEECHHHHHHH
Confidence            455669999999999999999998   889999777664

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.38  E-value=0.00034  Score=61.52  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~  307 (435)
                      -+|-++|.+||||||+|+.+. +++   +.+++.|.+.+.+
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G---~~vidaD~i~~~l   39 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLG---VPLVDADVVAREV   39 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTT---CCEEEHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCC---CeEEEchHHHHHH
Confidence            467799999999999998775 454   6788999876553

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00036  Score=62.14  Aligned_cols=28  Identities=18%  Similarity=0.162  Sum_probs=25.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK  293 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~  293 (435)
                      +++|++-|+.||||||+++.|++.+...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~~   29 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCEDW   29 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTTE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            6899999999999999999999988753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=7.1e-05  Score=62.89  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .++.++|+|||||||+++++++.+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            478999999999999999998764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.16  E-value=0.00086  Score=63.44  Aligned_cols=32  Identities=19%  Similarity=0.128  Sum_probs=22.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~l  298 (435)
                      ..|.+-|+-||||||+++.+++.+..+.+..+
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~~~~v~~~   36 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGSRDDIVYV   36 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----CCEEEE
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhCCCCeEEe
Confidence            34778899999999999999887765444443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.13  E-value=0.00032  Score=62.35  Aligned_cols=39  Identities=31%  Similarity=0.296  Sum_probs=26.2

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNL  302 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~  302 (435)
                      +.+.+|+|+|++|+||||.+.+|+..+  .+++..+++.|.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt   50 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV   50 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence            458999999999999999988887543  234477788874

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.0024  Score=56.35  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=24.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK  293 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~  293 (435)
                      .++|++-|+-||||||.++.|++.+..+
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            5789999999999999999999888643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.06  E-value=0.00026  Score=63.52  Aligned_cols=39  Identities=18%  Similarity=0.275  Sum_probs=33.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec-cHHHHHHh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG-TNLILEQM  307 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls-~D~ir~~~  307 (435)
                      +++|.++|..||||||+|+.+.+.++   +.+++ .|.+.+.+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g---~~~i~~aD~i~~~l   40 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIKDAL   40 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC---CeEEcccHHHHHHH
Confidence            57899999999999999999988876   88998 68776654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.00  E-value=0.00017  Score=62.02  Aligned_cols=28  Identities=32%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +.+.||-++|++||||||+|+.|.+.+.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456788999999999999999987644

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.97  E-value=0.00016  Score=64.12  Aligned_cols=40  Identities=23%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLI  303 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~i  303 (435)
                      +++.+|+|+|++|+||||-+.+|+..+  .++.+..++.|..
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   45 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF   45 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            357899999999999999988887542  2345778888853

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00017  Score=64.22  Aligned_cols=40  Identities=30%  Similarity=0.348  Sum_probs=30.5

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLI  303 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~i  303 (435)
                      ..+.+|+|+|++|+||||-+.+++..+  .++.+..++.|..
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~   50 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF   50 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence            457899999999999999888877542  2344777888854

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00079  Score=61.15  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      ++-+++.|+||+|||++|+.++.++.. .++.++...+.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~-~~~~i~~~~l~   79 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARV-PFITASGSDFV   79 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCC-CEEEEEhHHhh
Confidence            456899999999999999999998863 36777665543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00031  Score=65.99  Aligned_cols=42  Identities=21%  Similarity=0.143  Sum_probs=33.2

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHHH
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI  303 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~i  303 (435)
                      ..+.+-||-++|.+||||||+|+.|...+.    +..+.+|+.|.+
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            445678999999999999999999987642    234778899865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.83  E-value=0.00017  Score=63.95  Aligned_cols=39  Identities=36%  Similarity=0.437  Sum_probs=30.2

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNL  302 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~  302 (435)
                      ++..||+|+|++|+||||.+.+|+..+  .+++..+++.|.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt   48 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT   48 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence            346899999999999999988887543  234577888884

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.74  E-value=0.00028  Score=59.61  Aligned_cols=26  Identities=46%  Similarity=0.620  Sum_probs=22.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +++|-++|.+||||||++.++++.+.
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            46889999999999999999987654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00025  Score=59.73  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +.|+++|+||+||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            468899999999999999998764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.69  E-value=0.0026  Score=56.15  Aligned_cols=131  Identities=16%  Similarity=0.160  Sum_probs=66.2

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhc--c-CCC------------------ccCCCChHHHHHH
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMK--V-PGL------------------LRKHNYSERFQCL  325 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~--~-~G~------------------~~~~~~~~~~~~~  325 (435)
                      +++.|+||+|||++++.++.+..  +..++.++...+...+.  + .+.                  .....-.+.|+  
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~~~~~~--  116 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQ--  116 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHH--
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcCchHHH--
Confidence            78999999999999998876532  23356666655433321  0 000                  00000011221  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHH----HHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcH
Q 013831          326 MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSA----RKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPA  400 (435)
Q Consensus       326 ~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~----R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~  400 (435)
                           ..+-.++..+...|+.+|+-... .+..    ..++...+..   -.++-++.+ ++.++=++++..+.+-.+++
T Consensus       117 -----~~lf~lin~~~~~~~~iiits~~-~p~~l~~~~~dL~SRL~~---g~~~~i~p~d~~~~~iL~~~a~~rgl~l~~  187 (213)
T d1l8qa2         117 -----IEFFHIFNTLYLLEKQIILASDR-HPQKLDGVSDRLVSRFEG---GILVEIELDNKTRFKIIKEKLKEFNLELRK  187 (213)
T ss_dssp             -----HHHHHHHHHHHHTTCEEEEEESS-CGGGCTTSCHHHHHHHHT---SEEEECCCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred             -----HHHHHHHHHHhhccceEEEecCC-cchhccccchHHHHHhhC---ceEEEECCCcHHHHHHHHHHHHHcCCCCCH
Confidence                 22334566666788888886542 2211    1122222222   122233443 43322222233334677899


Q ss_pred             HHHHHHHhcc
Q 013831          401 DAVNNMLANY  410 (435)
Q Consensus       401 ~vi~~m~~~f  410 (435)
                      +++.-+.++.
T Consensus       188 ~v~~yl~~~~  197 (213)
T d1l8qa2         188 EVIDYLLENT  197 (213)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9998887765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.56  E-value=0.00039  Score=58.82  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~  291 (435)
                      |+++|+|||||||+++.++..++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            68999999999999999998765

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0033  Score=54.73  Aligned_cols=102  Identities=18%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             EEEEEccCCCChhHHHHHHHhh---------CCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHH
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD---------HPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS  338 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~---------~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~  338 (435)
                      =++++|.||.|||++++.++..         +.+++++.++...+     +.|.    .|...|+.....       +++
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~L-----iAg~----~~rG~~E~rl~~-------il~  108 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL-----VAGA----KYRGEFEERLKG-------VLN  108 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH-----HTTT----CSHHHHHHHHHH-------HHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHH-----hccC----CccHHHHHHHHH-------HHH
Confidence            3689999999999999988863         22344555654433     2342    456666644332       333


Q ss_pred             HHh-cCCC-eEEEeCCCcCHHH--------HHHHHHHHhcCCcEEEEEECChHHHHH
Q 013831          339 RAS-RTPR-NFIIDQTNVFKSA--------RKRKLRLFVNFRKIAVVVFPKPEDLKI  385 (435)
Q Consensus       339 ~al-~~g~-~vIlD~Tn~~~~~--------R~~~~~~~~~~~~~~vv~l~~~ee~~~  385 (435)
                      .+. ..|. .+.||.-|..-..        -...++.+-..+.+.+|--.+++++.+
T Consensus       109 e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~  165 (195)
T d1jbka_         109 DLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ  165 (195)
T ss_dssp             HHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHH
T ss_pred             HHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHH
Confidence            332 3444 5678874433111        012344443335677776667777653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.0017  Score=59.43  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir  304 (435)
                      +.-|+|.|+||+|||++|+.++...+ ..++.++...+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~-~~~~~~~~~~l~   78 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPELL   78 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT-CEEEEECHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC-CcEEEEEHHHhh
Confidence            45689999999999999999999986 347777765543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.00064  Score=63.10  Aligned_cols=41  Identities=17%  Similarity=0.027  Sum_probs=30.4

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhC-----CCccEEEeccHHH
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDH-----PEKRYILLGTNLI  303 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~-----~~~~~~~ls~D~i  303 (435)
                      .+.+-+|-+.|.+||||||++..+...+     ....+.+||.|++
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            3446788899999999999998875442     1223677898876

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00098  Score=60.84  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=28.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ++-++|.|+||+|||++|+.+++++.. .++.++..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~-~~~~i~~~   79 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGS   79 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTC-CEEEECSC
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCC-CEEEEEhH
Confidence            567899999999999999999998753 36666543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.49  E-value=0.0096  Score=56.08  Aligned_cols=25  Identities=16%  Similarity=0.140  Sum_probs=21.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..|.+-|.-|+||||+++.+++.++
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhc
Confidence            4577789999999999999998765

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.45  E-value=0.0027  Score=60.00  Aligned_cols=37  Identities=22%  Similarity=0.090  Sum_probs=22.0

Q ss_pred             EEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcc
Q 013831          373 AVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANY  410 (435)
Q Consensus       373 ~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~f  410 (435)
                      .+||++.+ +++++|+++|.+.+. .++.+-+++..+.+
T Consensus       162 liIyLd~~pe~~l~RIk~RgR~~E-~i~~eYL~~L~~~Y  199 (331)
T d1osna_         162 NLVVCTVSLPSHLSRVSKRARPGE-TVNLPFVMVLRNVY  199 (331)
T ss_dssp             EEEEEECCHHHHHHHCC------C-CCCHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHH
Confidence            56788875 999999999987643 47766655554443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.44  E-value=0.0024  Score=57.73  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=26.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      ..=|+|.|+||+|||++|+.++.+... .++.++
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~-~~~~i~   72 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNF-PFIKIC   72 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTC-SEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccc-cccccc
Confidence            345889999999999999999988753 355554

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.00078  Score=60.01  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      -++++|+||+||||+|+.+++++... +..+|
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~-~~~~~   67 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTN-IHVTS   67 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCC-EEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCC-ccccc
Confidence            36899999999999999999987643 44444

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.0025  Score=57.87  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      ++-++|.|+||+|||++|+.++..... .++.++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~-~~~~i~~~~   73 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGA-FFFLINGPE   73 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTC-EEEEECHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCC-eEEEEEchh
Confidence            456899999999999999999998763 355665544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0047  Score=56.50  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .=++|+|.||.|||++++.++..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            34679999999999999998864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0012  Score=56.70  Aligned_cols=27  Identities=15%  Similarity=0.479  Sum_probs=24.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      .++|+++|++||||||++++|+++.|+
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCc
Confidence            368999999999999999999988764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0019  Score=57.78  Aligned_cols=35  Identities=23%  Similarity=0.178  Sum_probs=27.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .+..+++.|+||+||||+|+.+++++.. .+..++.
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~-~~~~~~~   85 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGY-DILEQNA   85 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTC-EEEEECT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHh-hhhcccc
Confidence            3567899999999999999999998863 2445543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.08  E-value=0.0016  Score=58.03  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=24.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      -+++.|+||+||||+|+.+++++... +..++
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~~~-~~~~~   67 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELGVN-LRVTS   67 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCC-EEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC-eEecc
Confidence            46899999999999999999886532 44444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.96  E-value=0.0019  Score=57.16  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=25.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCC-ccEEEecc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT  300 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~  300 (435)
                      ||++.|.+||||||+.+++.+.+.. +...+|+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~   35 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL   35 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEec
Confidence            7889999999999999999865432 23556653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.90  E-value=0.0016  Score=57.58  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      -++++|+||+||||+|+.++++.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.88  E-value=0.0021  Score=60.08  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=27.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      +.-++|+||||+|||++|+.+++.+.. .++.++.-
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~-~~~~i~~s   83 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEAT   83 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGG
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcccc-chhccccc
Confidence            356788999999999999999988653 36666543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0029  Score=56.22  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=27.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      -.|++++|..||||||+.+++.+..+++++.+|-
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~   36 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE   36 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence            3589999999999999999999876555554443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.32  E-value=0.0026  Score=58.82  Aligned_cols=37  Identities=8%  Similarity=0.176  Sum_probs=25.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i  303 (435)
                      -||-++|.+||||||+++.+...++  +..+.+|+.|.+
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            4899999999999999998876543  123678888865

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0038  Score=54.91  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +++.|+||+||||+|+.+++++.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            67899999999999999987643

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.28  E-value=0.0042  Score=55.33  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=23.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      +..+++.|+||+||||+|+.+++.+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            56789999999999999999998754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.23  E-value=0.0045  Score=59.14  Aligned_cols=35  Identities=23%  Similarity=0.149  Sum_probs=28.7

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      +....++++|+||+|||++|+.++..+..+ ++.++
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~-~i~in  186 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGGK-ALNVN  186 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCE-EECCS
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCCC-EEEEE
Confidence            345689999999999999999999998743 55554

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0043  Score=52.88  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=21.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .+++++.|+|||||||+|.+++..
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHH
Confidence            679999999999999999999865

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0042  Score=54.67  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=20.0

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++.|+||+||||+|+.+++++
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999998763

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0045  Score=54.38  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=20.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++.|+||+||||+|+.+++++
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6789999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.004  Score=55.36  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      -+++.|+||+||||+|+.+++++
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            37899999999999999999874

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.01  E-value=0.0055  Score=49.99  Aligned_cols=21  Identities=48%  Similarity=0.545  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+..++...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999999865

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.99  E-value=0.029  Score=50.46  Aligned_cols=35  Identities=23%  Similarity=0.181  Sum_probs=26.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh---CCCccEEEecc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD---HPEKRYILLGT  300 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~---~~~~~~~~ls~  300 (435)
                      .+++++.|.||+|||||+..++..   ..+..+..++.
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~   72 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence            589999999999999999888743   22334666664

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.86  E-value=0.032  Score=52.14  Aligned_cols=130  Identities=15%  Similarity=0.100  Sum_probs=71.4

Q ss_pred             EEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCcc--CCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLR--KHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~--~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~  345 (435)
                      |+++|.+||||||+.+.++...|. .+.+.|- |.  .++.+.....  .......    .     .+..++..+++..-
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~~~rivtiE-d~--~El~l~~~~~~~~~~~~~~----~-----~~~~ll~~~lR~~p  236 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPKEERIISIE-DT--EEIVFKHHKNYTQLFFGGN----I-----TSADCLKSCLRMRP  236 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE-SS--CCCCCSSCSSEEEEECBTT----B-----CHHHHHHHHTTSCC
T ss_pred             EEEEeeccccchHHHHHHhhhcccccceeecc-ch--hhhhcccccccceeccccc----h-----hHHHHHHHHhccCC
Confidence            788999999999999999988764 3444442 21  2222211100  0001110    0     12235666777766


Q ss_pred             eEEEeCCCcCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHhhhhc--CCCCcHHHHHHH-Hhccc
Q 013831          346 NFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRFKEM--GKEVPADAVNNM-LANYV  411 (435)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~~ee~~~R~~~R~~~~--~~~vp~~vi~~m-~~~fe  411 (435)
                      +.|+=+---.++... +++.+..-+.  +.-+.-+++.+..+|+..-..+.  +..++.+.+.++ ...+.
T Consensus       237 d~iivgEiR~~ea~~-~l~a~~tGh~g~~tT~Ha~s~~~a~~Rl~~l~~~~~~~~~~~~~~~~~~i~~~vd  306 (323)
T d1g6oa_         237 DRIILGELRSSEAYD-FYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLID  306 (323)
T ss_dssp             SEEEESCCCSTHHHH-HHHHHHTTCSCEEEEECCSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHHHCC
T ss_pred             CcccCCccCchhHHH-HHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcccchhhccCCHHHHHHHHHhhee
Confidence            555544334555544 5665554333  45556666788888987643322  234666666655 44443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.86  E-value=0.0039  Score=55.95  Aligned_cols=24  Identities=33%  Similarity=0.219  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+++++|+||+||||+++.+++.+
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHH
Confidence            356678999999999999999764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.86  E-value=0.0049  Score=57.76  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=21.2

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ++|+|.||+||||+|+.++.-+|
T Consensus        31 vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCC
Confidence            68999999999999999998775

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.58  E-value=0.0088  Score=52.80  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=22.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ...++++.|.|||||||+|-+++..
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999999998754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.58  E-value=0.011  Score=50.48  Aligned_cols=31  Identities=10%  Similarity=0.220  Sum_probs=23.2

Q ss_pred             ccccCCCCcceEEEEEccCCCChhHHHHHHHh
Q 013831          257 GPTFCNMKDCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       257 ~p~~~~~~~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      ..++|... ...|.++|.|||||||+...+..
T Consensus        15 ~~~~p~~~-~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          15 PEQYPEGG-LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             GGGSCCSC-CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             hhHCCCCC-CCEEEEECCCCCCHHHHHHHhcC
Confidence            34455443 23488899999999999999974

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.50  E-value=0.0081  Score=50.10  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhh
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +++.+ |+++|.||+||||+..++...
T Consensus        13 ~k~~k-I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHK-VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEE-EEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEE-EEEECCCCCCHHHHHHHHhcC
Confidence            34455 668899999999999999865

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.0072  Score=52.89  Aligned_cols=25  Identities=12%  Similarity=0.159  Sum_probs=21.9

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..+++++.|.|||||||++-+++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4679999999999999999998753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.27  E-value=0.0099  Score=58.23  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=27.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~  302 (435)
                      +.=|+|+||||+|||.+|+.|++.+. -.++.++...
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~-VPFv~~daT~   84 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN-APFIKVEATK   84 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEGGG
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC-CCEEEeecce
Confidence            34589999999999999999999663 2377765443

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.011  Score=47.07  Aligned_cols=26  Identities=0%  Similarity=-0.066  Sum_probs=22.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +.-.|++.|++||||||+|+.|...+
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999997654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.17  E-value=0.011  Score=47.97  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+|+|.|++||||+..++....
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999998753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.16  E-value=0.014  Score=51.82  Aligned_cols=27  Identities=15%  Similarity=0.317  Sum_probs=23.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ..++++.|++|+||||+++++++..+.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            467889999999999999999887653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.10  E-value=0.011  Score=48.25  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+++|.||+||||+.+++....
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.01  E-value=0.02  Score=47.85  Aligned_cols=26  Identities=19%  Similarity=0.206  Sum_probs=24.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+|+|.|.=|||||||+|.+++.+.
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcc
Confidence            57899999999999999999999876

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.015  Score=51.03  Aligned_cols=26  Identities=15%  Similarity=0.161  Sum_probs=22.7

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +...++++.|.||+||||+|.+++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34689999999999999999999853

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.96  E-value=0.012  Score=51.70  Aligned_cols=36  Identities=22%  Similarity=0.447  Sum_probs=26.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~  300 (435)
                      ...++++.|.|||||||++.+++...  .+.....++.
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~   62 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAY   62 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence            36799999999999999999988652  2222445544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.88  E-value=0.012  Score=48.56  Aligned_cols=21  Identities=38%  Similarity=0.661  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+.+++...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            679999999999999999754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.012  Score=52.78  Aligned_cols=43  Identities=28%  Similarity=0.307  Sum_probs=31.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec--------cHHHHHHhc
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG--------TNLILEQMK  308 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls--------~D~ir~~~~  308 (435)
                      .+.+.++|.+||||||+++.+...++ ..+-+.++        .+.+|+.+.
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   80 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   80 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence            57899999999999999999998764 23344443        345666554

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.83  E-value=0.014  Score=52.67  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=25.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEe
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL  298 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~l  298 (435)
                      .+++.++|++||||||+++.++.-++ ..+-+.+
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i   74 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYDIDEGHILM   74 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccCCCccEEEE
Confidence            57899999999999999999987653 2334444

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.78  E-value=0.014  Score=48.66  Aligned_cols=22  Identities=41%  Similarity=0.641  Sum_probs=19.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      .|+++|.|++||||+.+++...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.78  E-value=0.014  Score=49.72  Aligned_cols=32  Identities=16%  Similarity=0.334  Sum_probs=25.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ..-++++|.+|+||||+|-.+.++-    +..++-|
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G----~~lvaDD   46 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN----HLFVGDD   46 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT----CEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC----CceecCC
Confidence            3568999999999999999998752    4455555

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.014  Score=54.76  Aligned_cols=28  Identities=21%  Similarity=0.278  Sum_probs=23.4

Q ss_pred             CCCcceEEEEEccCCCChhHHHHHHHhh
Q 013831          262 NMKDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       262 ~~~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ......+|-++|+|||||||+..++...
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            3345788999999999999999998754

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.74  E-value=0.042  Score=52.56  Aligned_cols=19  Identities=32%  Similarity=0.580  Sum_probs=16.6

Q ss_pred             EEEccCCCChhHHHHHHHh
Q 013831          270 MMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       270 im~GlPGSGKST~A~~l~~  288 (435)
                      +|+|.||.|||++++.++.
T Consensus        47 llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          47 VLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             EEEECTTSCHHHHHHHHHH
T ss_pred             eEECCCCCCHHHHHHHHHH
Confidence            7889999999999877764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.74  E-value=0.016  Score=49.48  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=25.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ..-|+++|.+|+||||+|-.+.++-    +..|+-|
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g----~~lv~DD   45 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG----HRLIADD   45 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT----CEEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC----CeEEecC
Confidence            4568999999999999999988762    3455544

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.71  E-value=0.018  Score=50.18  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=22.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ...++++.|.||+||||++-+++..
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.70  E-value=0.013  Score=48.71  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=20.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..+ |+|+|.||+||||+..++...
T Consensus        13 ~~k-I~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          13 TGK-LVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             CCE-EEEECCCCCCHHHHHHHHhCC
Confidence            345 679999999999999999754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.65  E-value=0.021  Score=51.98  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=22.2

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +..+|.++|.+|.||||+|+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999999998754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.62  E-value=0.031  Score=52.14  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=24.4

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCC-ccEEEecc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT  300 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~  300 (435)
                      ++++.|+||+|||.+|+.++.+... ..++.|+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~  158 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRF  158 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEh
Confidence            5566899999999999999987532 12455543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.53  E-value=0.019  Score=51.47  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=22.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      .+++.++|++||||||+++.++.-+
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            5889999999999999999998765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.017  Score=52.03  Aligned_cols=27  Identities=33%  Similarity=0.236  Sum_probs=23.7

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+++.+..-++
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            368899999999999999999987664

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.40  E-value=0.021  Score=53.47  Aligned_cols=27  Identities=19%  Similarity=0.172  Sum_probs=23.2

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhh
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .....+|-+.|+|||||||+..++...
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            345788999999999999999998864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.39  E-value=0.016  Score=48.53  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.|++||||+...+..+
T Consensus         3 I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.018  Score=48.07  Aligned_cols=21  Identities=14%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.||+||||++.++...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.36  E-value=0.018  Score=47.67  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=19.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+|+|.||+||||++.++....
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6799999999999999998653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.018  Score=49.24  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.1

Q ss_pred             EEEEEccCCCChhHHHHHHHhhC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~  290 (435)
                      -|+++|.|++||||+..++....
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46889999999999999998653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.019  Score=49.95  Aligned_cols=25  Identities=12%  Similarity=0.221  Sum_probs=21.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +..+++.|+||+||||+|+.+++.+
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhc
Confidence            4568999999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.32  E-value=0.021  Score=48.29  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=25.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D  301 (435)
                      ..-|+++|.+|+||||+|-.+.+.-    +..|+-|
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g----~~li~DD   46 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG----HRLVADD   46 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT----CEEEESS
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC----CeEEeCC
Confidence            3568999999999999998888762    3455544

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.021  Score=50.83  Aligned_cols=50  Identities=10%  Similarity=0.189  Sum_probs=34.7

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +.....+++|-  +++++..+...++.+.+..   ..+++++.-+ +++ .++..|.
T Consensus       146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~~dri  201 (232)
T d2awna2         146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA-MTLADKI  201 (232)
T ss_dssp             HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH-HHHCSEE
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEE
Confidence            56778999995  8899999988888776632   5677777544 444 4555553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.24  E-value=0.02  Score=47.68  Aligned_cols=21  Identities=24%  Similarity=0.626  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999999754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.20  E-value=0.021  Score=51.12  Aligned_cols=50  Identities=16%  Similarity=0.294  Sum_probs=36.1

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +.....+|+|-  +++++..|...++.+.+..   ..++|++.-+ +++ .++..|.
T Consensus       155 ~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~-~~~~drv  210 (240)
T d1g2912         155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDRI  210 (240)
T ss_dssp             HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEE
T ss_pred             hcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHH-HHhCCEE
Confidence            56778999996  8899999999888887642   5777777554 444 4555553

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.17  E-value=0.023  Score=52.07  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=23.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ..+++.++|++||||||+++.++..++
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            368899999999999999999987654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.02  Score=47.78  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||++.++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.15  E-value=0.02  Score=51.28  Aligned_cols=49  Identities=10%  Similarity=0.291  Sum_probs=35.6

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +...+.+|+|-  +++++..+...++.+.+..   .++++++.-+ +++ .+...|
T Consensus       156 ~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~-~~~~dr  210 (240)
T d3dhwc1         156 ASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV-KRICDC  210 (240)
T ss_dssp             HTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHH-HHHCSE
T ss_pred             ccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHH-HHhCCE
Confidence            46778899996  8899999999888887642   5778887655 443 455555

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.026  Score=52.54  Aligned_cols=32  Identities=16%  Similarity=0.172  Sum_probs=26.5

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~  300 (435)
                      .++++|+||+|||.+|+.+++.+.. .++.++.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~-~~i~~d~   85 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGI-ELLRFDM   85 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC-EEEEEEG
T ss_pred             EEEEECCCcchhHHHHHHHHhhccC-CeeEecc
Confidence            6889999999999999999998763 3666643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.12  E-value=0.02  Score=49.50  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWV  287 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~  287 (435)
                      ...++++.|.||+|||++|.+++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            46899999999999999998765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.021  Score=48.24  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.||+||||+++++...
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999999854

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.09  E-value=0.021  Score=47.16  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||++.++...
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998853

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.027  Score=46.87  Aligned_cols=25  Identities=32%  Similarity=0.578  Sum_probs=21.8

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      -|-.|+++|.|++||||+..+|...
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCC
Confidence            3567899999999999999999854

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.03  E-value=0.015  Score=48.54  Aligned_cols=27  Identities=37%  Similarity=0.459  Sum_probs=21.5

Q ss_pred             CCcceEEEEEccCCCChhHHHHHHHhhC
Q 013831          263 MKDCEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       263 ~~~~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +++.+ |+++|.|++||||+.+++....
T Consensus        10 ~k~~k-IvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          10 NKEMR-ILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             TCCEE-EEEEEETTSSHHHHHHHTTCCC
T ss_pred             CCeEE-EEEECCCCCCHHHHHHHHhcCC
Confidence            34456 6688999999999999997543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.01  E-value=0.017  Score=50.16  Aligned_cols=34  Identities=24%  Similarity=0.135  Sum_probs=26.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls  299 (435)
                      .+++.++|+.||||||+.+.++..++ ..+-+.++
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~   61 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN   61 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccccCCCEEEEC
Confidence            57889999999999999999987654 33344443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.00  E-value=0.022  Score=50.67  Aligned_cols=40  Identities=18%  Similarity=0.277  Sum_probs=29.3

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP  380 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~  380 (435)
                      +.....+|+|-  +++++..|...++.+.+..   ..++|++.-+
T Consensus       161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd  205 (230)
T d1l2ta_         161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD  205 (230)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCC
Confidence            45667888885  7888999998888887642   5677777543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.97  E-value=0.028  Score=47.07  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhh
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .-.|+++|.||+||||+.+++...
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            446999999999999999999865

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.022  Score=46.60  Aligned_cols=21  Identities=19%  Similarity=0.446  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.|++||||+..++...
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999999754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.023  Score=47.25  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+.+++...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.89  E-value=0.017  Score=48.56  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=21.1

Q ss_pred             CCCCcceEEEEEccCCCChhHHHHHHHh
Q 013831          261 CNMKDCEVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       261 ~~~~~~~liim~GlPGSGKST~A~~l~~  288 (435)
                      ...++.+ |+++|.||+||||+.+++..
T Consensus        13 ~~~k~~K-I~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          13 GSNKELR-ILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             TCSSCEE-EEEEEETTSSHHHHHHHTCC
T ss_pred             CCCceEE-EEEECCCCCCHHHHHHHHhc
Confidence            3444455 56899999999999999854

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.87  E-value=0.081  Score=42.02  Aligned_cols=39  Identities=18%  Similarity=0.059  Sum_probs=27.5

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i  303 (435)
                      +.++.+++++.|||||+.+-.+......+-.++.-+..+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~~~l   45 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAA   45 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESCHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcChHHH
Confidence            457889999999999999987777665432333333333

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.87  E-value=0.022  Score=47.39  Aligned_cols=21  Identities=29%  Similarity=0.610  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.|++||||+..++...
T Consensus        19 I~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.024  Score=47.36  Aligned_cols=21  Identities=14%  Similarity=0.523  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||++.++...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.80  E-value=0.025  Score=47.08  Aligned_cols=21  Identities=29%  Similarity=0.626  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+..++...
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            689999999999999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.78  E-value=0.024  Score=48.65  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|+|++||||+..++...
T Consensus         3 V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           3 VLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999865

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.75  E-value=0.026  Score=46.63  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+|+|.+++||||+..++....
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            4577999999999999997643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.70  E-value=0.018  Score=51.11  Aligned_cols=50  Identities=10%  Similarity=0.242  Sum_probs=34.7

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcC---CcEEEEEECCh-HHHHHHHHHhh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +...+.+++|-  +++++..+...++.+.+.   ..++++++.-+ +++ .+...|.
T Consensus       143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~-~~~~drv  198 (229)
T d3d31a2         143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA-RIMADRI  198 (229)
T ss_dssp             TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHCSEE
T ss_pred             hccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHH-HHhCCEE
Confidence            56778899996  788998888877777653   25777777554 554 3455553

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.62  E-value=0.029  Score=50.06  Aligned_cols=50  Identities=12%  Similarity=0.190  Sum_probs=35.6

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +.+.+.+|+|-  +++++..|...++.+.+..   ..+++++.-+ +++ .+...|.
T Consensus       152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a-~~~~dri  207 (239)
T d1v43a3         152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA-MTMGDRI  207 (239)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEE
T ss_pred             ccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH-HHhCCEE
Confidence            56778999996  7899999999888887642   5677777544 444 4555553

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.59  E-value=0.026  Score=51.00  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=36.5

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +...+.+|+|-  +++++..+...++.+.+..  ..+++++.-+ +++ .++..|.
T Consensus       165 ~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~-~~~adri  219 (258)
T d1b0ua_         165 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA-RHVSSHV  219 (258)
T ss_dssp             HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH-HHHCSEE
T ss_pred             hcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHH-HHhCCEE
Confidence            56778999996  8899999998888777532  4677777665 444 5666674

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.028  Score=46.91  Aligned_cols=21  Identities=19%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.|++||||++.++...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.57  E-value=0.028  Score=47.38  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||++.++...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999999854

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.57  E-value=0.029  Score=50.13  Aligned_cols=50  Identities=8%  Similarity=0.117  Sum_probs=35.1

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +.+...+++|-  +++++..|...++.+....   ..+++++.-+ +++ .+...|.
T Consensus       142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~-~~~adri  197 (240)
T d2onka1         142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA-AMLADEV  197 (240)
T ss_dssp             TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH-HHHCSEE
T ss_pred             hccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH-HHhCCEE
Confidence            56788999996  7889999998888877642   4677777544 554 3455553

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.037  Score=49.11  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=28.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls  299 (435)
                      ..+++.++|+.||||||+.+.++...+.++-+.+.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~   58 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFA   58 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEES
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEEC
Confidence            46899999999999999999998766654445443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.028  Score=49.72  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=21.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +..+++.|+||+||||+|+.+++.+
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHh
Confidence            4568899999999999999988764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.029  Score=46.61  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.+|+||||++.++...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999999854

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.50  E-value=0.029  Score=46.14  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.+|+||||++.++...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.03  Score=46.31  Aligned_cols=21  Identities=19%  Similarity=0.479  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||++.++...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578999999999999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.031  Score=46.18  Aligned_cols=21  Identities=14%  Similarity=0.377  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+++++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999854

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.31  E-value=0.33  Score=41.42  Aligned_cols=24  Identities=13%  Similarity=0.390  Sum_probs=19.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      .+.|+++|+   ||+|+.++|.+.+|.
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p~   32 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFPD   32 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTT
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCcc
Confidence            355666774   699999999998875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.26  E-value=0.02  Score=51.76  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=22.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .+.+.++|.+||||||+++.+...++
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            57899999999999999998886654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.033  Score=46.60  Aligned_cols=21  Identities=19%  Similarity=0.544  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.||+||||+..++...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.034  Score=46.12  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.|++||||+++++...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=91.92  E-value=0.034  Score=49.65  Aligned_cols=50  Identities=4%  Similarity=0.080  Sum_probs=35.1

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~  391 (435)
                      +...+.+|+|-  +.+++..|.+.++.+.+..  ..+++++.-+ +++. +...|.
T Consensus       155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~-~~~drv  209 (240)
T d1ji0a_         155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL-KVAHYG  209 (240)
T ss_dssp             TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH-HHCSEE
T ss_pred             HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEE
Confidence            56778999995  7899999998888877642  4677666544 5543 555553

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.038  Score=46.07  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.+|+||||+++++...
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999999864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.82  E-value=0.037  Score=47.10  Aligned_cols=21  Identities=19%  Similarity=0.503  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||++.++...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            678899999999999999854

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.039  Score=45.79  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+.+++...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            778999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.039  Score=45.29  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+++++...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.038  Score=45.70  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.||+||||+..++...
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578899999999999998753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.69  E-value=0.023  Score=50.93  Aligned_cols=49  Identities=16%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +.....+|+|-  +++++..+...++.+.+..   ..+++++.-+ +++. +...|
T Consensus       156 ~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~-~~~dr  210 (242)
T d1oxxk2         156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF-AIADR  210 (242)
T ss_dssp             TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHH-HHCSE
T ss_pred             hhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-HhCCE
Confidence            45777889996  7888888888888777642   5677777544 4443 44455

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.68  E-value=0.041  Score=45.43  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+.+++...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999999754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.66  E-value=0.017  Score=47.21  Aligned_cols=21  Identities=33%  Similarity=0.678  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.|++||||+..++..+
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.042  Score=45.30  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|-||+||||+..++...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.40  E-value=0.044  Score=49.33  Aligned_cols=41  Identities=10%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 013831          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP  380 (435)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~  380 (435)
                      .+...+.+|+|-  +.+++..+..+++.+.+..  ..+++++.-+
T Consensus       165 L~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHd  209 (254)
T d1g6ha_         165 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR  209 (254)
T ss_dssp             HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence            356778999995  6788888888887776532  4777777543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.39  E-value=0.046  Score=45.33  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.+|+||||+..++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.33  E-value=0.029  Score=46.75  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=8.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.||+||||+.+++...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999988753

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.047  Score=45.02  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.||+||||+..++...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788899999999999999864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.048  Score=45.15  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+++++...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            678999999999999998754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.22  E-value=0.045  Score=48.88  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=20.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      .+.+++|.||+||||++-.++..
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            68899999999999999888653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.17  E-value=0.05  Score=45.05  Aligned_cols=21  Identities=14%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.+|+|||++.+++...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.14  E-value=0.046  Score=46.15  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=17.5

Q ss_pred             EEEEccCCCChhHHHHHHH
Q 013831          269 MMMVGLPASGKTTWAEKWV  287 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~  287 (435)
                      |+|+|.+|+||||+..++.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6889999999999999994

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.068  Score=48.07  Aligned_cols=37  Identities=22%  Similarity=0.195  Sum_probs=29.0

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      .+++|+++|.=|.||||+|..++..+  .+++...|+.|
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            46899999999999999887776543  23457788877

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=90.88  E-value=0.058  Score=48.04  Aligned_cols=49  Identities=12%  Similarity=0.150  Sum_probs=32.7

Q ss_pred             hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHh
Q 013831          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKR  390 (435)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R  390 (435)
                      +...+.+|+|-  +.+++..++..++.+.+..  ..+++++.-. +++ .+...|
T Consensus       149 ~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~-~~~~dr  202 (238)
T d1vpla_         149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV-EFLCDR  202 (238)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH-TTTCSE
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCE
Confidence            45678899996  7788888888888776542  4677666443 443 334444

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.83  E-value=0.05  Score=47.48  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|++|+||||+.+++...
T Consensus         9 illlG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            589999999999999998754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.056  Score=44.57  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+|||++.+++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999999765

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.71  E-value=0.061  Score=49.86  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=25.0

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC--CccEEEec
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLG  299 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls  299 (435)
                      +++++|+||+|||.+|+.+++.+.  ...++.++
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~   88 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID   88 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEe
Confidence            688999999999999999998752  22355553

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.058  Score=45.25  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|-+|+||||+.+++...
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.68  E-value=0.059  Score=44.50  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999999864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.06  Score=44.82  Aligned_cols=21  Identities=38%  Similarity=0.360  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.+|+||||+..++...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            467899999999999999865

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.57  E-value=0.061  Score=44.57  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=18.4

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999999853

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.066  Score=44.04  Aligned_cols=21  Identities=19%  Similarity=0.504  Sum_probs=18.3

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         7 v~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999998753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.065  Score=45.10  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999998754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.038  Score=45.97  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=17.3

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||+..++...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            677899999999999988654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.12  E-value=0.049  Score=45.48  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |.++|.|++||||+..+|...
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678899999999999999654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.10  E-value=0.051  Score=45.54  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |.++|.|++||||+..+|...
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999998654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.07  E-value=0.063  Score=51.48  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=22.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      .=+|+++|+.||||||....+....+
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhc
Confidence            46899999999999999998887653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.076  Score=44.07  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+||||++.++...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=0.043  Score=45.45  Aligned_cols=22  Identities=14%  Similarity=0.249  Sum_probs=18.8

Q ss_pred             EEEEEccCCCChhHHHHHHHhh
Q 013831          268 VMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~  289 (435)
                      =|.++|.|++||||+.+++...
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3778999999999999988654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.61  E-value=0.12  Score=48.80  Aligned_cols=31  Identities=23%  Similarity=0.287  Sum_probs=24.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~l  298 (435)
                      .-++|+|++|+|||-+|++|++.... .++.+
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~~~-~~ir~   99 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHLDI-PIAIS   99 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEE
T ss_pred             cceeeeCCCCccHHHHHHHHHhhccc-ceeeh
Confidence            44899999999999999999987642 24444

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.40  E-value=0.092  Score=43.93  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.1

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~  291 (435)
                      |+|.|.+|+||||+..++.....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~   27 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHG   27 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68899999999999999976643

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.39  E-value=0.085  Score=44.17  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|.+|+|||++++++...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.37  E-value=0.12  Score=42.98  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |.++|.|++||||+..++...
T Consensus        11 V~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            677899999999999999854

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.02  E-value=0.086  Score=47.18  Aligned_cols=23  Identities=13%  Similarity=0.312  Sum_probs=19.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      -=|+++|.||+||||+...+..+
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Confidence            34778899999999999999854

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.096  Score=44.19  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+++|.+|+|||++..++...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.11  Score=45.98  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKWV  287 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l~  287 (435)
                      .+++|+.|+.+|||||+.|.++
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            4789999999999999999875

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=88.02  E-value=4.3  Score=30.74  Aligned_cols=97  Identities=26%  Similarity=0.352  Sum_probs=55.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~  346 (435)
                      .+|++-|+-.+=|||.|.++.+++.   +-++-...+ + +.-.|          .+++.+.-    ..     +....+
T Consensus         1 tliilegpdccfkstvaaklskelk---ypiikgssf-e-laksg----------neklfehf----nk-----ladedn   56 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELK---YPIIKGSSF-E-LAKSG----------NEKLFEHF----NK-----LADEDN   56 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHT---CCEEECCCH-H-HHHHC----------HHHHHHHH----HH-----HTTCCS
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhc---CceecCchh-h-hhhcc----------CHHHHHHH----Hh-----hccccc
Confidence            3789999999999999999999876   333311110 0 00011          12233321    11     356789


Q ss_pred             EEEeCCCcCHH--------------HHHHHHHHHhc-CC-cEEEEEECC-hHHHHHHHHHh
Q 013831          347 FIIDQTNVFKS--------------ARKRKLRLFVN-FR-KIAVVVFPK-PEDLKIRSVKR  390 (435)
Q Consensus       347 vIlD~Tn~~~~--------------~R~~~~~~~~~-~~-~~~vv~l~~-~ee~~~R~~~R  390 (435)
                      ||||.- ++..              .|+  ++.+.. .. ...+||+.+ |..+.+|+.-|
T Consensus        57 viidrf-vysnlvyakkfkdysilterq--lrfiedkikakakvvylhadpsvikkrlrvr  114 (164)
T d2axpa1          57 VIIDRF-VYSNLVYAKKFKDYSILTERQ--LRFIEDKIKAKAKVVYLHADPSVIKKRLRVR  114 (164)
T ss_dssp             EEEESC-HHHHHHHTTTBSSCCCCCHHH--HHHHHHHHTTTEEEEEEECCHHHHHHHHHHH
T ss_pred             eeeehh-hhhhhHHHhhcccceehhHHH--HHHHHHHhhhheeEEEEecChHHHHHHhccc
Confidence            999962 2211              111  222221 11 467889977 58999999888

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=87.97  E-value=0.091  Score=47.28  Aligned_cols=15  Identities=27%  Similarity=0.293  Sum_probs=12.4

Q ss_pred             EEEEccCCCChhHHH
Q 013831          269 MMMVGLPASGKTTWA  283 (435)
Q Consensus       269 iim~GlPGSGKST~A  283 (435)
                      +++.|.|||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            456799999999874

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=87.86  E-value=0.13  Score=46.41  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=27.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ...++.+.|+|||||||++-.++...  ++...+.+++.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            35799999999999999998876432  23346666653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=87.67  E-value=0.13  Score=48.45  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=17.7

Q ss_pred             ceEEEEEccCCCChhHHHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAEKW  286 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~~l  286 (435)
                      ..+.++.|+||+||||.+..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            458999999999999987554

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.64  E-value=0.15  Score=45.36  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=28.4

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D  301 (435)
                      ...+||+++|-=|+||||+|-.|+..+  .++++..|..|
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            456899999999999999876665432  13457777777

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.59  E-value=0.14  Score=42.55  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |+|+|..|+||||+.+++...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            688999999999999999754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.57  E-value=0.13  Score=42.86  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHhhC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~  290 (435)
                      |+++|.+|+||||+..++....
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6789999999999999997653

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.55  E-value=0.16  Score=42.98  Aligned_cols=24  Identities=33%  Similarity=0.574  Sum_probs=20.9

Q ss_pred             EEEEEccCCCChhHHHHHHHhhCC
Q 013831          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       268 liim~GlPGSGKST~A~~l~~~~~  291 (435)
                      ++++.|...||||.||++++...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            478999999999999999986654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.09  E-value=0.12  Score=46.92  Aligned_cols=15  Identities=27%  Similarity=0.381  Sum_probs=12.5

Q ss_pred             EEEEccCCCChhHHH
Q 013831          269 MMMVGLPASGKTTWA  283 (435)
Q Consensus       269 iim~GlPGSGKST~A  283 (435)
                      +++.|.|||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            556799999999875

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.48  E-value=0.16  Score=43.89  Aligned_cols=28  Identities=11%  Similarity=0.259  Sum_probs=24.3

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      +...+++.|+|.+|||++|..+++-+.+
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~G   79 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFIQG   79 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHhCC
Confidence            3567889999999999999999988764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.36  E-value=0.16  Score=44.64  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHhhC
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~~  290 (435)
                      +..+++|.+|+||||+...|..+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh
Confidence            467899999999999999997553

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=86.14  E-value=0.29  Score=43.98  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=24.4

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~~~  292 (435)
                      ....+++.|+|++||||++..+..-++.
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            3567888999999999999999998863

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.32  E-value=0.23  Score=44.09  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=19.8

Q ss_pred             EEEEccCCCChhHHHHHHHhhCC
Q 013831          269 MMMVGLPASGKTTWAEKWVKDHP  291 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~~~  291 (435)
                      |++.|.||+||+++|+.+....+
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCcCHHHHHHHHHHhcC
Confidence            57789999999999999986644

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=84.91  E-value=4.7  Score=34.84  Aligned_cols=39  Identities=18%  Similarity=0.020  Sum_probs=26.6

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhh--CCCccEEEeccHHH
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKD--HPEKRYILLGTNLI  303 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~--~~~~~~~~ls~D~i  303 (435)
                      .+...+++|..|||||-++-..+..  ..++.+.++.+..+
T Consensus        75 ~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~  115 (233)
T d2eyqa3          75 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL  115 (233)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHH
Confidence            3567789999999999887666533  23345666666543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=84.39  E-value=0.24  Score=41.25  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHhh
Q 013831          269 MMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       269 iim~GlPGSGKST~A~~l~~~  289 (435)
                      |-++|-|.+||||+..+|...
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            789999999999999999854

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=83.63  E-value=0.17  Score=39.38  Aligned_cols=19  Identities=21%  Similarity=0.080  Sum_probs=15.7

Q ss_pred             ceEEEEEccCCCChhHHHH
Q 013831          266 CEVMMMVGLPASGKTTWAE  284 (435)
Q Consensus       266 ~~liim~GlPGSGKST~A~  284 (435)
                      .+.++++++||||||+.|-
T Consensus         7 ~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TCEEEECCCTTSSTTTTHH
T ss_pred             CCcEEEEcCCCCChhHHHH
Confidence            4677899999999997663

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.08  E-value=0.27  Score=42.07  Aligned_cols=26  Identities=8%  Similarity=-0.065  Sum_probs=22.3

Q ss_pred             CcceEEEEEccCCCChhHHHHHHHhh
Q 013831          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       264 ~~~~liim~GlPGSGKST~A~~l~~~  289 (435)
                      ..+.-+++.|.||+||||+|..+++.
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~   38 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEY   38 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34677899999999999999998764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.98  E-value=0.31  Score=42.55  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q 013831          267 EVMMMVGLPASGKTTWAEKWV  287 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~  287 (435)
                      +++++.|+..|||||+.|.+.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            489999999999999999875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.40  E-value=0.32  Score=43.62  Aligned_cols=22  Identities=27%  Similarity=0.290  Sum_probs=18.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~  288 (435)
                      .+.+++|+.||||||+.+.+.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4789999999999999877743

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=82.06  E-value=0.047  Score=45.42  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVK  288 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~  288 (435)
                      .+.+++|..||||||+...+.-
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999998864

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.39  E-value=0.46  Score=42.68  Aligned_cols=36  Identities=25%  Similarity=0.211  Sum_probs=26.1

Q ss_pred             cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT  300 (435)
Q Consensus       265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~  300 (435)
                      ...++.+.|.|||||||+|-.++...  .+..++.|++
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            46799999999999999998776532  2233556655

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=80.13  E-value=0.17  Score=44.55  Aligned_cols=23  Identities=13%  Similarity=0.284  Sum_probs=19.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHhh
Q 013831          267 EVMMMVGLPASGKTTWAEKWVKD  289 (435)
Q Consensus       267 ~liim~GlPGSGKST~A~~l~~~  289 (435)
                      +..+++|.+|+||||+...|..+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            45678899999999999999754